Citrus Sinensis ID: 046623
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 218 | 2.2.26 [Sep-21-2011] | |||||||
| A4FV98 | 226 | Protein-lysine methyltran | yes | no | 0.729 | 0.703 | 0.339 | 3e-15 | |
| Q8WXB1 | 218 | Protein-lysine methyltran | yes | no | 0.596 | 0.596 | 0.359 | 1e-13 | |
| Q8CDZ2 | 244 | Protein-lysine methyltran | no | no | 0.669 | 0.598 | 0.323 | 8e-12 | |
| Q96AZ1 | 226 | Protein-lysine methyltran | no | no | 0.669 | 0.646 | 0.337 | 9e-12 | |
| Q5RJL2 | 225 | Methyltransferase-like pr | no | no | 0.605 | 0.586 | 0.333 | 2e-11 | |
| Q8C436 | 228 | Protein-lysine methyltran | no | no | 0.591 | 0.565 | 0.344 | 2e-11 | |
| A4FV42 | 218 | Protein-lysine methyltran | no | no | 0.486 | 0.486 | 0.403 | 6e-11 | |
| Q6BKI8 | 254 | Putative nicotinamide N-m | yes | no | 0.619 | 0.531 | 0.333 | 6e-11 | |
| Q6DJF8 | 234 | Methyltransferase-like pr | N/A | no | 0.610 | 0.568 | 0.328 | 6e-11 | |
| A2AA28 | 253 | Methyltransferase-like pr | no | no | 0.605 | 0.521 | 0.333 | 8e-11 |
| >sp|A4FV98|MT21B_BOVIN Protein-lysine methyltransferase METTL21B OS=Bos taurus GN=METTL21B PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 9/168 (5%)
Query: 20 NVCDSVTGRPLTGAWLWDSALILAQFI-STHFDFQNKSVLELGAGAGLPGLTAARLGATR 78
N+ ++ R A +WD+AL L + S + DF+ K V+ELGAG G+ G+ AA G
Sbjct: 41 NITENFGSRLGVAARVWDAALSLCNYFESQNVDFRGKKVIELGAGTGIVGILAALQGGD- 99
Query: 79 VVLTDVKPLLPGLINNVEAN-GLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP 137
V +TD+ +L + NV+AN GGR +VR L WG D Q G++D+V+ +D+ Y
Sbjct: 100 VTITDLPLVLEQIQGNVQANVPPGGRAQVRALSWGID---QHVFPGDYDLVLGADIVYLE 156
Query: 138 EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTG-DCLHELIMSQGFRV 184
L TL+ +CG H ++ S++R G + + ++ Q F++
Sbjct: 157 PTFPLLLGTLRHLCGP--HGTIYLASKMREEHGTESFFQHLLPQHFQL 202
|
Probable methyltransferase. Bos taurus (taxid: 9913) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8WXB1|MT21A_HUMAN Protein-lysine methyltransferase METTL21A OS=Homo sapiens GN=METTL21A PE=1 SV=2 | Back alignment and function description |
|---|
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 9/139 (6%)
Query: 32 GAWLWDSALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPG 90
A +WD+A++L+ ++ + + +S +ELGAG GL G+ AA LGA V +TD K L
Sbjct: 43 AAVVWDAAIVLSTYLEMGAVELRGRSAVELGAGTGLVGIVAALLGA-HVTITDRKVALEF 101
Query: 91 LINNVEAN---GLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTL 147
L +NV+AN + + V+EL WG +L S GEFD+++ +D+ Y E L +TL
Sbjct: 102 LKSNVQANLPPHIQTKTVVKELTWGQ-NLGSFSP-GEFDLILGADIIYLEETFTDLLQTL 159
Query: 148 KRVCGTGRHTVVWAVSEVR 166
+ +C H+V+ +R
Sbjct: 160 EHLCSN--HSVILLACRIR 176
|
Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8CDZ2|MT21E_MOUSE Protein-lysine methyltransferase METTL21E OS=Mus musculus GN=Mettl21e PE=2 SV=1 | Back alignment and function description |
|---|
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 18/164 (10%)
Query: 6 IEIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTH---FDFQNKSVLELGA 62
AG+ I I E G+ GA++W SAL+L F+ TH ++ +K+V+E+GA
Sbjct: 48 FHFAGHEIQITE---------GKDCYGAFVWPSALVLCYFLETHAKQYNMVDKNVIEIGA 98
Query: 63 GAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEAN---GLGGRVEVRELVWG-SDDLSQ 118
G GL + A+ LGA RV+ TD+ LL L N+ N +V+EL WG + D +
Sbjct: 99 GTGLVSIVASLLGA-RVIATDLPELLGNLQYNISRNTKMKCKHLPQVKELSWGVALDRNF 157
Query: 119 LSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAV 162
FD ++ +DV Y + L T +C ++WA+
Sbjct: 158 PRSSNNFDYILAADVVYAHPFLEELLMTFDHLCKETT-IILWAM 200
|
Probable methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q96AZ1|MT21B_HUMAN Protein-lysine methyltransferase METTL21B OS=Homo sapiens GN=METTL21B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 11/157 (7%)
Query: 32 GAWLWDSALILAQFI-STHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPG 90
A +WD+AL L + S + DF+ K V+ELGAG G+ G+ AA G V +TD+ L
Sbjct: 53 AARVWDAALSLCNYFESQNVDFRGKKVIELGAGTGIVGILAALQGGD-VTITDLPLALEQ 111
Query: 91 LINNVEAN-GLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFY-DPEEMVGLGKTLK 148
+ NV+AN GG+ +VR L WG D +D+V+ +D+ Y +P + LG TL+
Sbjct: 112 IQGNVQANVPAGGQAQVRALSWGID---HHVFPANYDLVLGADIVYLEPTFPLLLG-TLQ 167
Query: 149 RVCGTGRHTVVWAVSEVRTRTG-DCLHELIMSQGFRV 184
+C H ++ S++R G + + ++ Q F++
Sbjct: 168 HLCRP--HGTIYLASKMRKEHGTESFFQHLLPQHFQL 202
|
Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q5RJL2|MET23_RAT Methyltransferase-like protein 23 OS=Rattus norvegicus GN=Mettl23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 78/141 (55%), Gaps = 9/141 (6%)
Query: 32 GAWLWDSALILAQFISTHFD-FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPG 90
G ++W A++LAQ++ H K+VLE+GAG LPG+ AA+ GA +V L+D P LP
Sbjct: 35 GMYVWPCAVVLAQYLWFHRRVLPGKAVLEIGAGVSLPGILAAKCGA-KVTLSD-SPELPH 92
Query: 91 LIN----NVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKT 146
++ + + N L +V++ L WG LS L D+++ SDVF++PE+ + T
Sbjct: 93 CLDICWQSCQMNNL-PQVQIVGLTWGHISKDTLS-LPPQDIILGSDVFFEPEDFESILAT 150
Query: 147 LKRVCGTGRHTVVWAVSEVRT 167
+ + W+ +VR+
Sbjct: 151 VYFLMQKNPKVQFWSTYQVRS 171
|
Probable methyltransferase. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8C436|MT21D_MOUSE Protein-lysine methyltransferase METTL21D OS=Mus musculus GN=Mettl21d PE=2 SV=2 | Back alignment and function description |
|---|
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 16/145 (11%)
Query: 32 GAWLWDSALILAQFIST-------HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDV 84
G +WD+A++L++++ T +SVLELG+G G GL AA LGA V++TD+
Sbjct: 39 GCVVWDAAIVLSKYLETPGFSGDGAHALSRRSVLELGSGTGAVGLMAATLGAD-VIVTDL 97
Query: 85 KPLLPGLINNVEANG--LGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVG 142
+ L L N++ N + G V+ + L WG D + +L D ++M+D Y E +
Sbjct: 98 EELQDLLKMNIDMNKHLVTGSVQAKVLKWGED----IEDLMSPDYILMADCIYYEESLEP 153
Query: 143 LGKTLKRVCGTGRHTVVWAVSEVRT 167
L KTLK + G+ T + E RT
Sbjct: 154 LLKTLKDLSGS--ETCIICCYEQRT 176
|
Probable methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A4FV42|MT21A_BOVIN Protein-lysine methyltransferase METTL21A OS=Bos taurus GN=METTL21A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 66/114 (57%), Gaps = 8/114 (7%)
Query: 56 SVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEAN---GLGGRVEVRELVWG 112
S +ELGAG GL G+ AA LGA V +TD K L L +NV+AN + + V+EL WG
Sbjct: 68 SAVELGAGTGLVGIVAALLGA-HVTITDRKVALEFLKSNVQANLPPHIQPKAVVKELTWG 126
Query: 113 SDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR 166
+L + S GEFD+++ +D+ Y E L +TL+ +C H+VV +R
Sbjct: 127 Q-NLGRFSP-GEFDLILGADIIYLEETFTDLLQTLEHLCSN--HSVVLLACRIR 176
|
Probable methyltransferase. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6BKI8|NNT1_DEBHA Putative nicotinamide N-methyltransferase OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=NNT1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 76/153 (49%), Gaps = 18/153 (11%)
Query: 25 VTGRPLTGAWLWDSALILAQFISTHFD--FQNKSVLELGAGAGLPGLTAARLGATRVVLT 82
V PL G LW++ + A ++ H D K VLELGA AGLP L RVV T
Sbjct: 46 VGKSPLWGHLLWNAGVFTADYLDKHADELVTGKDVLELGAAAGLPSLICGINKCNRVVCT 105
Query: 83 DVKPLLPGLINNVEAN-----GLG-GRVEVRELVWGS-------DDLSQLSELGEFDMVI 129
D P LI+N++ N GL + V+ +WG+ D ++ +FD+VI
Sbjct: 106 DYPD--PDLISNIQHNFDHCQGLDLSKTVVKGFIWGADAKPLMDDSEKEIQNEDKFDLVI 163
Query: 130 MSDVFYDPEEMVGLGKTLKR-VCGTGRHTVVWA 161
+SD+ ++ E + L KT + V G+ VV++
Sbjct: 164 LSDLVFNHTEHLKLLKTCRDTVKKNGKCLVVFS 196
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Putative nicotinamide N-methyltransferase involved in rDNA silencing and in lifespan determination. Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q6DJF8|MET23_XENLA Methyltransferase-like protein 23 OS=Xenopus laevis GN=mettl23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 7/140 (5%)
Query: 32 GAWLWDSALILAQFISTHF-DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPG 90
G ++W A++LAQ++ H + +K VLE+GAG LPG+ AA+ GA +V+L+D +
Sbjct: 40 GMYVWPCAVVLAQYLWYHRKNLADKRVLEVGAGVSLPGILAAKCGA-KVILSDSAEMPQC 98
Query: 91 LIN---NVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTL 147
L N + + N + G V V L WG L +L D+++ SDVFY+P++ + T+
Sbjct: 99 LENCRRSCKMNNIVG-VPVIGLTWGEVS-PDLLDLPPIDIILGSDVFYEPKDFEDILLTV 156
Query: 148 KRVCGTGRHTVVWAVSEVRT 167
+ + W +VR+
Sbjct: 157 RFLMERMPQAEFWTTYQVRS 176
|
Probable methyltransferase. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A2AA28|MET23_MOUSE Methyltransferase-like protein 23 OS=Mus musculus GN=Mettl23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 77/141 (54%), Gaps = 9/141 (6%)
Query: 32 GAWLWDSALILAQFISTHF-DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPG 90
G ++W A++LAQ++ H K+VLE+GAG LPG+ AA+ GA +V+L+D P
Sbjct: 63 GMYVWPCAVVLAQYLWFHRRSLPGKAVLEVGAGVSLPGILAAKCGA-KVILSDSSE-FPH 120
Query: 91 LIN----NVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKT 146
++ + + N L +VEV L WG LS L D+++ SDVF++PE+ + T
Sbjct: 121 CLDICRQSCQMNNL-PQVEVVGLTWGHISKDILS-LPPQDIILGSDVFFEPEDFESILAT 178
Query: 147 LKRVCGTGRHTVVWAVSEVRT 167
+ + W+ +VR+
Sbjct: 179 VYFLMQKNPKVQFWSTYQVRS 199
|
Probable methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 218 | ||||||
| 224138000 | 261 | predicted protein [Populus trichocarpa] | 0.958 | 0.800 | 0.585 | 2e-60 | |
| 449464918 | 221 | PREDICTED: methyltransferase-like protei | 0.857 | 0.846 | 0.571 | 2e-55 | |
| 326533808 | 213 | predicted protein [Hordeum vulgare subsp | 0.816 | 0.835 | 0.502 | 1e-36 | |
| 5852184 | 246 | H0811D08.3 [Oryza sativa Indica Group] | 0.899 | 0.796 | 0.446 | 3e-35 | |
| 297742169 | 132 | unnamed protein product [Vitis vinifera] | 0.564 | 0.931 | 0.629 | 9e-35 | |
| 125549967 | 248 | hypothetical protein OsI_17664 [Oryza sa | 0.899 | 0.790 | 0.442 | 2e-34 | |
| 115460930 | 248 | Os04g0645500 [Oryza sativa Japonica Grou | 0.816 | 0.717 | 0.453 | 2e-34 | |
| 357162357 | 243 | PREDICTED: methyltransferase-like protei | 0.830 | 0.744 | 0.46 | 5e-32 | |
| 242074558 | 237 | hypothetical protein SORBIDRAFT_06g03056 | 0.908 | 0.835 | 0.425 | 4e-29 | |
| 413919724 | 237 | hypothetical protein ZEAMMB73_810291 [Ze | 0.903 | 0.831 | 0.437 | 7e-29 |
| >gi|224138000|ref|XP_002326493.1| predicted protein [Populus trichocarpa] gi|222833815|gb|EEE72292.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/217 (58%), Positives = 168/217 (77%), Gaps = 8/217 (3%)
Query: 2 STREIEIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFIST-HFDFQNKSVLEL 60
+ REI+IAG ++ I L V DS+TGR TG+W+WDSAL+L+++++T FD ++KSV+EL
Sbjct: 39 AVREIDIAGQTLKIHALGEVYDSLTGRAFTGSWIWDSALLLSRWLATSQFDLRDKSVIEL 98
Query: 61 GAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDD-LSQL 119
GAGAGLPGLTAA LGA+RV+LTD+ PLLPGL+ NVEAN L RVEVRELVWGS++ LS++
Sbjct: 99 GAGAGLPGLTAALLGASRVLLTDIAPLLPGLVKNVEANELEDRVEVRELVWGSEESLSRI 158
Query: 120 SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMS 179
EL FD+V++SDVF+D EEM LG+TLK+V +G T + A SEVR TG+CL+EL+ S
Sbjct: 159 GELRRFDVVLLSDVFFDLEEMAALGRTLKKV--SGNKTRILAASEVRFWTGECLNELV-S 215
Query: 180 QGFRVIELTCQLGG--GCPEAFAVYELIPPMHEENFH 214
QGF+V+E+ Q G G + FAVY +IPP EE+ H
Sbjct: 216 QGFKVVEVPIQEDGSDGGRDIFAVYNIIPP-DEEDCH 251
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464918|ref|XP_004150176.1| PREDICTED: methyltransferase-like protein 21A-like [Cucumis sativus] gi|449511527|ref|XP_004163980.1| PREDICTED: methyltransferase-like protein 21A-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/196 (57%), Positives = 151/196 (77%), Gaps = 9/196 (4%)
Query: 1 MSTREIEIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTH-----FDFQNK 55
M +E +I+ +I+I ELD++ DS TGR LTG+W+W+SA +LA++++T FDF+ K
Sbjct: 1 MVVKEFQISDRNIVIHELDDLYDSTTGRVLTGSWVWNSAFVLAKWMATQCNLFDFDFRQK 60
Query: 56 SVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDD 115
+V+ELGAG GLPGLTAA LGA RV+LTDV+PLLPGL+ NV+ANG+G RVEVRELVWGS+D
Sbjct: 61 NVIELGAGTGLPGLTAALLGANRVLLTDVEPLLPGLLENVDANGVGDRVEVRELVWGSND 120
Query: 116 L-SQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLH 174
L SQ +ELGEFD+++MSD+FY+ EEM L + LK + GT T +WA SE+R T +C+
Sbjct: 121 LPSQANELGEFDLILMSDLFYNSEEMPHLAQVLKIISGTD--TKIWAASEIRPWTIECIT 178
Query: 175 ELIMSQGFRVIELTCQ 190
ELI +QGF++ E Q
Sbjct: 179 ELI-NQGFKITESPVQ 193
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326533808|dbj|BAK05435.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/185 (50%), Positives = 118/185 (63%), Gaps = 7/185 (3%)
Query: 7 EIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHF--DFQNKSVLELGAGA 64
++AG ++ + E D D TGR LTG+WLWDSA++LA ++++ +VLELGAG
Sbjct: 2 DVAGRALAVVERDGAHDPATGRTLTGSWLWDSAVVLASYLASAHPSPLLGATVLELGAGT 61
Query: 65 GLPGLTA-ARLGATRVVLTDVKPLLPGLINNVEANGL-GGRVEVRELVWGSDDLSQLSEL 122
GLPG+ A A LGA R VLTDV PLLP L N EANGL + +VREL WG D EL
Sbjct: 62 GLPGIAAVACLGAARCVLTDVGPLLPVLRANAEANGLTPAQADVRELRWGEDAGVPDHEL 121
Query: 123 GEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGF 182
D+V+MSDVFYDPEEM + TL+R+ G TV WA SEVR DCL +++ GF
Sbjct: 122 LRVDVVLMSDVFYDPEEMPAMAATLRRLWRDG--TVGWAASEVRCGVQDCL-DVLREHGF 178
Query: 183 RVIEL 187
V E+
Sbjct: 179 HVAEI 183
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5852184|emb|CAB55422.1| H0811D08.3 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 128/215 (59%), Gaps = 19/215 (8%)
Query: 5 EIEIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFIST---HFDFQNKSVLELG 61
+ +AG ++ + E D D TGR LTG+WLWDS+L+LA +++ H + +VLELG
Sbjct: 17 HVAVAGRTLAVAERDGTHDPATGRALTGSWLWDSSLVLASHLASCVHHHHLRGATVLELG 76
Query: 62 AGAGLPGLTA-ARLGATRVVLTDVKPLLPGLINNVEANGLGG-RVEVRELVWGSDDLSQL 119
AG GLPG+ A A LGA R VLTDV+PLLPGL N +ANGL + +VREL WG L
Sbjct: 77 AGTGLPGIAAVACLGAARCVLTDVRPLLPGLRANADANGLTAEQADVRELRWG----GHL 132
Query: 120 SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRH----TVVWAVSEVRTRTGDCLHE 175
+ D+V+MSDVFYDP++M + TL + G TV WA SE R DC+ +
Sbjct: 133 EPEVQVDVVLMSDVFYDPDDMPAMADTLHGLWRDGDSDGGGTVGWAASEARDGVQDCI-D 191
Query: 176 LIMSQGFRVIE---LTCQLGGGCPEA--FAVYELI 205
++ QGF V+E +T L +A FAVY L
Sbjct: 192 VLREQGFEVVEVDRVTRSLLRDPEQAADFAVYRLF 226
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742169|emb|CBI33956.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 78/124 (62%), Positives = 97/124 (78%), Gaps = 1/124 (0%)
Query: 1 MSTREIEIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHF-DFQNKSVLE 59
M REI I+G+ + I EL++VCDS TGR LTG+WLWDS+L+L+Q+++T D + KSV+E
Sbjct: 1 MGIREISISGHKLTIHELEDVCDSATGRVLTGSWLWDSSLLLSQWMATRAEDIRGKSVIE 60
Query: 60 LGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQL 119
LGAG GLPGLTAA LGA RVVLTDV+ LL GL NVE NGLG RVEVRELVWGS++ +
Sbjct: 61 LGAGTGLPGLTAAMLGAGRVVLTDVEALLRGLERNVEVNGLGERVEVRELVWGSEEEEEW 120
Query: 120 SELG 123
+G
Sbjct: 121 VSMG 124
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125549967|gb|EAY95789.1| hypothetical protein OsI_17664 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 127/217 (58%), Gaps = 21/217 (9%)
Query: 5 EIEIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFIST---HFDFQNKSVLELG 61
+ +AG ++ + E D D TGR LTG+WLWDS+L+LA +++ H + +VLELG
Sbjct: 17 HVAVAGRTLAVAERDGTHDPATGRALTGSWLWDSSLVLASHLASCVHHHHLRGATVLELG 76
Query: 62 AGAGLPGLTA-ARLGATRVVLTDVKPLLPGLINNVEANGLGG-RVEVRELVWGSDDLSQL 119
AG GLPG+ A A LGA R VLTDV+PLLPGL N +ANGL + +VREL WG L
Sbjct: 77 AGTGLPGIAAVACLGAARCVLTDVRPLLPGLRANADANGLTAEQADVRELRWG----GHL 132
Query: 120 SELGEFDMVIMSDVFYDPEEMVGLGKTLK------RVCGTGRHTVVWAVSEVRTRTGDCL 173
+ D+V+MSDVFYDP++M + TL G TV WA SE R DC+
Sbjct: 133 EPEVQVDVVLMSDVFYDPDDMPAMADTLHGLWRDGDSDSDGGGTVGWAASEARDGVQDCI 192
Query: 174 HELIMSQGFRVIE---LTCQLGGGCPEA--FAVYELI 205
+++ QGF V+E +T L +A FAVY L
Sbjct: 193 -DVLREQGFEVVEVDRVTRSLLRDPEQAADFAVYRLF 228
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115460930|ref|NP_001054065.1| Os04g0645500 [Oryza sativa Japonica Group] gi|32487351|emb|CAE03173.1| OSJNBa0070O11.4 [Oryza sativa Japonica Group] gi|113565636|dbj|BAF15979.1| Os04g0645500 [Oryza sativa Japonica Group] gi|125591844|gb|EAZ32194.1| hypothetical protein OsJ_16400 [Oryza sativa Japonica Group] gi|215693015|dbj|BAG88435.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 118/194 (60%), Gaps = 16/194 (8%)
Query: 5 EIEIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFIST---HFDFQNKSVLELG 61
+ +AG ++ + E D D TGR LTG+WLWDS+L+LA +++ H + +VLELG
Sbjct: 17 HVAVAGRTLAVAERDGTHDPATGRALTGSWLWDSSLVLASHLASCVHHHHLRGATVLELG 76
Query: 62 AGAGLPGLTA-ARLGATRVVLTDVKPLLPGLINNVEANGLGG-RVEVRELVWGSDDLSQL 119
AG GLPG+ A A LGA R VLTDV+PLLPGL N +ANGL + +VREL WG L
Sbjct: 77 AGTGLPGIAAVACLGAARCVLTDVRPLLPGLRANADANGLTAEQADVRELRWG----GHL 132
Query: 120 SELGEFDMVIMSDVFYDPEEMVGLGKTLK------RVCGTGRHTVVWAVSEVRTRTGDCL 173
+ D+V+MSDVFYDP++M + TL G TV WA SE R DC+
Sbjct: 133 EPEVQVDVVLMSDVFYDPDDMPAMADTLHGLWRDGDSDSDGGGTVGWAASEARDGVQDCI 192
Query: 174 HELIMSQGFRVIEL 187
+++ QGF V+E+
Sbjct: 193 -DVLREQGFEVVEV 205
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357162357|ref|XP_003579383.1| PREDICTED: methyltransferase-like protein 22-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 92/200 (46%), Positives = 122/200 (61%), Gaps = 19/200 (9%)
Query: 6 IEIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFI--STHFD--FQNKSVLELG 61
+E+AG ++ + E D D TGR LTG+WLWDSAL+LA + S H + + +V+ELG
Sbjct: 10 VEVAGRALAVAERDGTHDPATGRALTGSWLWDSALVLASHLAASDHANPILRGATVVELG 69
Query: 62 AGA-GLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGL-GGRVEVRELVWGSDDLS 117
AGA GLPG+ A LGA R VLTD P LLPGL N +ANGL + +VREL WG D +
Sbjct: 70 AGATGLPGIAAVSCLGARRCVLTDAAPALLPGLRANADANGLDAAQADVRELRWGDDLPA 129
Query: 118 QLSEL-GEFDMVIMSDVFYDPEEMVGLGKTLKRVC---------GTGRHTVVWAVSEVRT 167
L G+ D+V+MSDVFYDPEEM L KT++ + G+ TV WA SE R
Sbjct: 130 DRGGLVGQVDVVLMSDVFYDPEEMPALAKTMQALWHWREEEDDGGSIADTVGWAASEARD 189
Query: 168 RTGDCLHELIMSQGFRVIEL 187
+C+ ++ +GF V E+
Sbjct: 190 GVEECVG-VLRKEGFEVAEV 208
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242074558|ref|XP_002447215.1| hypothetical protein SORBIDRAFT_06g030560 [Sorghum bicolor] gi|241938398|gb|EES11543.1| hypothetical protein SORBIDRAFT_06g030560 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 130/221 (58%), Gaps = 23/221 (10%)
Query: 5 EIEIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHFDFQNK----SVLEL 60
+ +AG+++ + E D D TGR LTG+WLWDS+L+LA ++ + + +V+EL
Sbjct: 10 HVAVAGHALAVVERDGTSDPATGRVLTGSWLWDSSLVLAAHLAADSRARRRLLGATVVEL 69
Query: 61 GAGA-GLPGLTA-ARLGATRVVLTDVKPLLPGLINNVEANGLG-GRVEVRELVWGSDDLS 117
GAG+ GLPG+ A A LGA R VLTDV LLPGL N +ANGLG R +VREL WG D
Sbjct: 70 GAGSTGLPGVAAVACLGAARCVLTDVAALLPGLRANADANGLGAARADVRELRWG--DRL 127
Query: 118 QLSELGE-FDMVIMSDVFYDPEEMVGLGKTLKRVCGT-------GRHTVVWAVSEVRTRT 169
QL + E +V++SDVFYDP++M + TL+ + T G TV WA SEVR
Sbjct: 128 QLEDDDERVGVVLLSDVFYDPDDMPAMAATLRGMWWTDGDDDEDGGGTVGWAASEVRDSV 187
Query: 170 GDCLHELIMSQGFRVIELT-----CQLGGGCPEAFAVYELI 205
+C+ +++ GF V E+ G AFAVY ++
Sbjct: 188 LECM-DVLREHGFEVAEVDRVTRPLLRDPGETAAFAVYRVL 227
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413919724|gb|AFW59656.1| hypothetical protein ZEAMMB73_810291 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 125/215 (58%), Gaps = 18/215 (8%)
Query: 5 EIEIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFIS----THFDFQNKSVLEL 60
+ +AG ++ + E D D TGR LTG+WLW+S+L+LA ++ + +V+EL
Sbjct: 10 HVAVAGRALAVVERDGTSDPATGRVLTGSWLWESSLVLAAHLAADPRARRRLRGATVVEL 69
Query: 61 GAGAGLPGLTA-ARLGATRVVLTDVKPLLPGLINNVEANGL-GGRVEVRELVWGSDDLSQ 118
GAG GLPG+ A A LGA R VLTDV LLPGL N +ANGL R VREL WG DL
Sbjct: 70 GAGTGLPGIAAVACLGAARCVLTDVAALLPGLRANADANGLSAARARVRELRWG--DLLP 127
Query: 119 LSE-LGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR---HTVVWAVSEVRTRTGDCLH 174
L + G +V++SDVFYDPE+M + TL+ + T T WA SEVR DC+
Sbjct: 128 LDDGDGRVGVVLLSDVFYDPEDMPAMAATLRGMWWTDEGGGGTAGWAASEVRDSVLDCM- 186
Query: 175 ELIMSQGFRVIE---LTCQL--GGGCPEAFAVYEL 204
+++ GF V+E +T L G AFAVY +
Sbjct: 187 DVLREHGFEVVEVDRVTTPLLRDPGQSAAFAVYRI 221
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 218 | ||||||
| UNIPROTKB|A4FV98 | 226 | METTL21B "Protein-lysine methy | 0.733 | 0.707 | 0.296 | 1.3e-11 | |
| UNIPROTKB|I3LNJ7 | 226 | METTL21B "Uncharacterized prot | 0.733 | 0.707 | 0.290 | 2.8e-11 | |
| UNIPROTKB|F1PBM6 | 181 | METTL21B "Uncharacterized prot | 0.674 | 0.812 | 0.308 | 1.5e-10 | |
| UNIPROTKB|Q8WXB1 | 218 | METTL21A "Protein-lysine methy | 0.591 | 0.591 | 0.268 | 6.6e-07 | |
| UNIPROTKB|A4FV42 | 218 | METTL21A "Protein-lysine methy | 0.596 | 0.596 | 0.277 | 9e-07 | |
| UNIPROTKB|Q96AZ1 | 226 | METTL21B "Protein-lysine methy | 0.674 | 0.650 | 0.283 | 1.1e-06 | |
| TAIR|locus:2197234 | 316 | AT1G73320 "AT1G73320" [Arabido | 0.701 | 0.484 | 0.286 | 2.9e-06 | |
| UNIPROTKB|Q5RE14 | 236 | METTL21A "Protein-lysine methy | 0.385 | 0.355 | 0.340 | 3.5e-06 | |
| RGD|1311824 | 218 | Mettl21a "methyltransferase li | 0.623 | 0.623 | 0.265 | 6e-06 | |
| ZFIN|ZDB-GENE-040718-53 | 241 | zgc:92518 "zgc:92518" [Danio r | 0.587 | 0.531 | 0.287 | 2.2e-05 |
| UNIPROTKB|A4FV98 METTL21B "Protein-lysine methyltransferase METTL21B" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 51/172 (29%), Positives = 85/172 (49%)
Query: 20 NVCDSVTGRPLTGAWLWDSALILAQFI-STHFDFQNKSVXXXXXXXXXXXXXXXXXXXTR 78
N+ ++ R A +WD+AL L + S + DF+ K V
Sbjct: 41 NITENFGSRLGVAARVWDAALSLCNYFESQNVDFRGKKVIELGAGTGIVGILAALQGGD- 99
Query: 79 VVLTDVKPLLPGLINNVEAN-GLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFY-D 136
V +TD+ +L + NV+AN GGR +VR L WG D Q G++D+V+ +D+ Y +
Sbjct: 100 VTITDLPLVLEQIQGNVQANVPPGGRAQVRALSWGID---QHVFPGDYDLVLGADIVYLE 156
Query: 137 PEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTG-DCLHELIMSQGFRVIEL 187
P + LG TL+ +CG H ++ S++R G + + ++ Q F+ +EL
Sbjct: 157 PTFPLLLG-TLRHLCGP--HGTIYLASKMREEHGTESFFQHLLPQHFQ-LEL 204
|
|
| UNIPROTKB|I3LNJ7 METTL21B "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 50/172 (29%), Positives = 85/172 (49%)
Query: 20 NVCDSVTGRPLTGAWLWDSALILAQFI-STHFDFQNKSVXXXXXXXXXXXXXXXXXXXTR 78
++ ++ R A +WD+AL L + S + DF+ K V
Sbjct: 41 SITENFGSRLGVAARVWDAALSLCNYFESQNVDFRGKKVIELGAGTGIVGILAALQGGD- 99
Query: 79 VVLTDVKPLLPGLINNVEAN-GLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFY-D 136
V +TD+ +L + NV+AN GGR +VR L WG D Q G++D+V+ +D+ Y +
Sbjct: 100 VTITDLPLVLEQIQGNVQANVPTGGRAQVRALSWGID---QHVFPGDYDLVLGADIVYLE 156
Query: 137 PEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTG-DCLHELIMSQGFRVIEL 187
P + LG TL+ +CG H ++ S++R G + + ++ Q F+ +EL
Sbjct: 157 PTFPLLLG-TLRHLCGP--HGTIYLASKMRKEHGTESFFQHLLPQHFQ-LEL 204
|
|
| UNIPROTKB|F1PBM6 METTL21B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 49/159 (30%), Positives = 78/159 (49%)
Query: 33 AWLWDSALILAQFI-STHFDFQNKSVXXXXXXXXXXXXXXXXXXXTRVVLTDVKPLLPGL 91
A +WD AL L + S + DF+ K V V +TD+ L +
Sbjct: 9 ARVWDFALSLCNYFESQNVDFRGKKVIELGAGTGIVGILAALQGGD-VTITDLPLALEQI 67
Query: 92 INNVEAN-GLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFY-DPEEMVGLGKTLKR 149
NV+AN GGR +VR L WG D Q G++D+V+ +D+ Y +P + LG TL+
Sbjct: 68 QGNVQANVPAGGRAQVRALSWGID---QHVFPGDYDLVLGADIVYLEPTFPLLLG-TLQH 123
Query: 150 VCGTGRHTVVWAVSEVRTRTG-DCLHELIMSQGFRVIEL 187
+CG H ++ S++R G + + ++ Q F+ +EL
Sbjct: 124 LCGP--HGTIYLASKMREEHGTESFFQHLLPQHFQ-LEL 159
|
|
| UNIPROTKB|Q8WXB1 METTL21A "Protein-lysine methyltransferase METTL21A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 128 (50.1 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 37/138 (26%), Positives = 65/138 (47%)
Query: 33 AWLWDSALILAQFISTH-FDFQNKSVXXXXXXXXXXXXXXXXXXXTRVVLTDVKPLLPGL 91
A +WD+A++L+ ++ + + +S V +TD K L L
Sbjct: 44 AVVWDAAIVLSTYLEMGAVELRGRSAVELGAGTGLVGIVAALLGA-HVTITDRKVALEFL 102
Query: 92 INNVEAN---GLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLK 148
+NV+AN + + V+EL WG + L S GEFD+++ +D+ Y E L +TL+
Sbjct: 103 KSNVQANLPPHIQTKTVVKELTWGQN-LGSFSP-GEFDLILGADIIYLEETFTDLLQTLE 160
Query: 149 RVCGTGRHTVVWAVSEVR 166
+C H+V+ +R
Sbjct: 161 HLCSN--HSVILLACRIR 176
|
|
| UNIPROTKB|A4FV42 METTL21A "Protein-lysine methyltransferase METTL21A" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 38/137 (27%), Positives = 62/137 (45%)
Query: 33 AWLWDSALILAQFISTHFDFQNKSVXXXXXXXXXXXXXXXXXXXTRVVLTDVKPLLPGLI 92
A +WD+A++LA ++ V +TD K L L
Sbjct: 44 AVVWDAAVVLATYLEMGTVELRGCSAVELGAGTGLVGIVAALLGAHVTITDRKVALEFLK 103
Query: 93 NNVEAN---GLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKR 149
+NV+AN + + V+EL WG + L + S GEFD+++ +D+ Y E L +TL+
Sbjct: 104 SNVQANLPPHIQPKAVVKELTWGQN-LGRFSP-GEFDLILGADIIYLEETFTDLLQTLEH 161
Query: 150 VCGTGRHTVVWAVSEVR 166
+C H+VV +R
Sbjct: 162 LCSN--HSVVLLACRIR 176
|
|
| UNIPROTKB|Q96AZ1 METTL21B "Protein-lysine methyltransferase METTL21B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 45/159 (28%), Positives = 76/159 (47%)
Query: 33 AWLWDSALILAQFI-STHFDFQNKSVXXXXXXXXXXXXXXXXXXXTRVVLTDVKPLLPGL 91
A +WD+AL L + S + DF+ K V V +TD+ L +
Sbjct: 54 ARVWDAALSLCNYFESQNVDFRGKKVIELGAGTGIVGILAALQGGD-VTITDLPLALEQI 112
Query: 92 INNVEAN-GLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFY-DPEEMVGLGKTLKR 149
NV+AN GG+ +VR L WG D + +D+V+ +D+ Y +P + LG TL+
Sbjct: 113 QGNVQANVPAGGQAQVRALSWGIDH--HVFP-ANYDLVLGADIVYLEPTFPLLLG-TLQH 168
Query: 150 VCGTGRHTVVWAVSEVRTRTG-DCLHELIMSQGFRVIEL 187
+C H ++ S++R G + + ++ Q F+ +EL
Sbjct: 169 LCRP--HGTIYLASKMRKEHGTESFFQHLLPQHFQ-LEL 204
|
|
| TAIR|locus:2197234 AT1G73320 "AT1G73320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 49/171 (28%), Positives = 75/171 (43%)
Query: 6 IEIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHFD-----FQNKSVXXX 60
++ G+S+ I L + C S+ +TG+ +WDS ++L +F+ D + K +
Sbjct: 96 LDACGHSLSI--LQSPC-SLNTPGVTGSVMWDSGVVLGKFLEHSVDSKVLSLEGKKIVEL 152
Query: 61 XXXXXXXXXXXXXXXXTRVVLTDVKPLLPGLINNVEAN----GLGGRVEVRELVWGSDDL 116
VLTD+ L L N++ N G V+ELVWG D
Sbjct: 153 GSGCGLVGCIAALLGGN-AVLTDLPDRLRLLKKNIQTNLHRGNTRGSAIVQELVWGDDPD 211
Query: 117 SQLSELGEF-DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR 166
L E F D V+ SDV Y E + L KTL ++C T ++ E+R
Sbjct: 212 PDLIE--PFPDYVLGSDVIYSEEAVHHLVKTLLQLCSD--QTTIFLSGELR 258
|
|
| UNIPROTKB|Q5RE14 METTL21A "Protein-lysine methyltransferase METTL21A" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 31/91 (34%), Positives = 49/91 (53%)
Query: 79 VVLTDVKPLLPGLINNVEAN---GLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFY 135
V +TD K L L +NV+AN + + V+EL WG + L S GEFD+++ +D+ Y
Sbjct: 108 VTITDRKVALEFLKSNVQANLPPHIQPKTVVKELTWGQN-LGSFSP-GEFDLILGADIIY 165
Query: 136 DPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR 166
E L +TL+ +C H+V+ +R
Sbjct: 166 LEETFTDLLQTLEHLCSN--HSVILLACRIR 194
|
|
| RGD|1311824 Mettl21a "methyltransferase like 21A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 121 (47.7 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 38/143 (26%), Positives = 63/143 (44%)
Query: 27 GRPLTGAWLWDSALILAQFISTHFDFQNKSVXXXXXXXXXXXXXXXXXXXTRVVLTDVKP 86
GR A +WD+A++L+ ++ V +TD K
Sbjct: 38 GRLGVAAVVWDAAIVLSTYLEMGAVELRGCSAVELGAGTGLVGIVAALLGAHVTITDRKV 97
Query: 87 LLPGLINNVEAN---GLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGL 143
L L +NVEAN + +V V+EL WG + L S GEFD+++ +D+ Y + L
Sbjct: 98 ALEFLKSNVEANLPPHIQPKVVVKELTWGQN-LDSFSP-GEFDLILGADIIYLEDTFTDL 155
Query: 144 GKTLKRVCGTGRHTVVWAVSEVR 166
+TL +C ++V+ +R
Sbjct: 156 LQTLGHLCSN--NSVILLACRIR 176
|
|
| ZFIN|ZDB-GENE-040718-53 zgc:92518 "zgc:92518" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 118 (46.6 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 40/139 (28%), Positives = 61/139 (43%)
Query: 32 GAWLWDSALILAQFISTHFDFQN---KSVXXXXXXXXXXXXXXXXXXXTRVVLTDVKPLL 88
GA LW SA++L F+ +H D N K + +V TD+ +L
Sbjct: 43 GAVLWPSAMVLCHFLDSHRDQYNLLDKKIIELGAGTGLVTIVTSLLGA-QVTSTDLPDVL 101
Query: 89 PGLINNVEANGLGG-RVE--VRELVWGSDDLSQLSELG-EFDMVIMSDVFYDPEEMVGLG 144
L +NV N G R E V EL+WG + ++D ++ +DV Y + L
Sbjct: 102 ANLRHNVNRNTRGRCRHEPQVTELIWGQQLEERFPRYTCQYDYILAADVVYGHPYLQELL 161
Query: 145 KTLKRVCGTGRHTVV-WAV 162
+T +C HTV+ WA+
Sbjct: 162 ETFIHLCSD--HTVILWAM 178
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_scaffold_29000149 | hypothetical protein (261 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 218 | |||
| pfam10294 | 170 | pfam10294, Methyltransf_16, Putative methyltransfe | 6e-25 | |
| COG3897 | 218 | COG3897, COG3897, Predicted methyltransferase [Gen | 6e-17 | |
| COG2263 | 198 | COG2263, COG2263, Predicted RNA methylase [Transla | 1e-08 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 1e-07 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 6e-06 | |
| TIGR04290 | 226 | TIGR04290, meth_Rta_06860, methyltransferase, Rta_ | 9e-05 | |
| COG0742 | 187 | COG0742, COG0742, N6-adenine-specific methylase [D | 1e-04 | |
| TIGR00406 | 288 | TIGR00406, prmA, ribosomal protein L11 methyltrans | 3e-04 | |
| COG2264 | 300 | COG2264, PrmA, Ribosomal protein L11 methylase [Tr | 4e-04 | |
| COG2813 | 300 | COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans | 7e-04 | |
| PRK07580 | 230 | PRK07580, PRK07580, Mg-protoporphyrin IX methyl tr | 7e-04 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 0.001 | |
| TIGR02021 | 219 | TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m | 0.001 | |
| COG0357 | 215 | COG0357, GidB, Predicted S-adenosylmethionine-depe | 0.001 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 0.002 | |
| pfam03602 | 183 | pfam03602, Cons_hypoth95, Conserved hypothetical p | 0.004 |
| >gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 6e-25
Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 6/127 (4%)
Query: 32 GAWLWDSALILAQFISTHFDF-----QNKSVLELGAGAGLPGLTAARLGATR-VVLTDVK 85
G +WD+A++L++++ +VLELG+G GL G+ A L V +TD++
Sbjct: 18 GGHVWDAAVVLSKYLEMKITPGGNNLSGLNVLELGSGTGLVGIAVALLLPGASVTITDLE 77
Query: 86 PLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGK 145
+ + N+E NGL +V + L WG D + + D+++ +D Y+ + L K
Sbjct: 78 EAIELMKKNIELNGLSSKVTAKVLDWGEDLPDDVFDPHPVDLILAADCVYNEDSFPLLEK 137
Query: 146 TLKRVCG 152
TL + G
Sbjct: 138 TLNDLLG 144
|
Length = 170 |
| >gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 6e-17
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 29 PLTGAWLWDSALILAQFISTHFD-FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP- 86
P A+ W +LA++I H + + K VL+LGAG+GL + AAR GA VV D+ P
Sbjct: 54 PPFWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPW 113
Query: 87 LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKT 146
L + N ANG V + +D + FD+++ D+FY+ E L
Sbjct: 114 LEQAIRLNAAANG----VSILFT--HAD---LIGSPPAFDLLLAGDLFYNHTEADRLIPW 164
Query: 147 LKRVCGTGRHTVV 159
R+ G +V
Sbjct: 165 KDRLAEAGAAVLV 177
|
Length = 218 |
| >gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-08
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 37 DSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNV 95
A + D + K+VL+LGAG G+ + AA LGA+RV+ D+ P L N
Sbjct: 29 PLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANA 88
Query: 96 EANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130
E L G VE D+S G+FD VIM
Sbjct: 89 EE--LLGDVEFVV-----ADVSDFR--GKFDTVIM 114
|
Length = 198 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-07
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 39 ALILAQFISTHFDFQNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKPLLPGLIN-NVE 96
A++LA F + +L+LGAG G GL A R ++V +++ + NV
Sbjct: 33 AILLAAFA---PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVA 89
Query: 97 ANGLGGRVEVRELVWGSDDLSQLSE---LGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGT 153
N L R++V E D+ + + FD++I + ++ G +
Sbjct: 90 LNPLEERIQVIE-----ADIKEFLKALVFASFDLIICNPPYFKQ----GSRLNENPLRAI 140
Query: 154 GRHTV 158
RH +
Sbjct: 141 ARHEI 145
|
Length = 248 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-06
Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 4/107 (3%)
Query: 57 VLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDL 116
VL+LG G G L A RV D+ P+ L A L VEV + G +
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLK---GDAEE 58
Query: 117 SQLSELGEFDMVIMSDVF-YDPEEMVGLGKTLKRVCGTGRHTVVWAV 162
FD++I + E++ + +R+ G V+ V
Sbjct: 59 LPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTLV 105
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|213903 TIGR04290, meth_Rta_06860, methyltransferase, Rta_06860 family | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 9e-05
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVE--ANGLGGRVEVRE 108
D SVL++G AG + R GA RV+ D P + A LG +E R+
Sbjct: 47 DLSGWSVLDIGCNAGFYSIEMKRRGAGRVLGIDSDPR---YLAQARFAAEVLGADIEFRQ 103
Query: 109 LVWGSDDLSQLSELGE-FDMVIMSDVFY 135
+ + L LGE FD+V+ V Y
Sbjct: 104 M-----SVYDLGRLGERFDLVLFMGVLY 126
|
Members of this family are methyltransferases that mark a widely distributed large conserved gene neighborhood of unknown function. It appears most common in soil and rhizosphere bacteria. Length = 226 |
| >gnl|CDD|223813 COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 1e-04
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 48 THFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDV-KPLLPGLINNVEANGLGGRVEV 106
+ + VL+L AG+G GL A GA RVV + + + L N++A GL G V
Sbjct: 38 APDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARV 97
Query: 107 --RELVWGSDDLSQLSELGEFDMVIMSDVFYDP 137
+ + L QL FD+ VF DP
Sbjct: 98 LRNDALRA---LKQLGTREPFDL-----VFLDP 122
|
Length = 187 |
| >gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 3e-04
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 50 FDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPL-LPGLINNVEANGLGGRVEVRE 108
D ++K+V+++G G+G+ + A +LGA +VV D+ PL + N E N + R++V+
Sbjct: 156 LDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL 215
Query: 109 LVWGSDDLSQLSELGEFDMVI 129
L Q E G+ D+++
Sbjct: 216 -----IYLEQPIE-GKADVIV 230
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288 |
| >gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 50 FDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPL-LPGLINNVEANGLGGRVEVRE 108
+ K+VL++G G+G+ + AA+LGA +VV D+ P + N NG+ V+
Sbjct: 159 LLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQA-- 216
Query: 109 LVWGSDDLSQLSELGEFDMVI 129
L ++ E G FD+++
Sbjct: 217 ---KGFLLLEVPENGPFDVIV 234
|
Length = 300 |
| >gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 7e-04
Identities = 38/181 (20%), Positives = 62/181 (34%), Gaps = 47/181 (25%)
Query: 43 AQFISTHFDF-QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKPL-LPGLINNVEANG 99
++ + VL+LG G G+ GL A+ ++ L DV + N+ ANG
Sbjct: 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG 206
Query: 100 LGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159
VE E VW S+ + G+FD++I + F+ G+ V
Sbjct: 207 ----VENTE-VWASNLYEPVE--GKFDLIISNPPFHA-----------------GKAVVH 242
Query: 160 WAVSEVRTRTGDCLH---------------ELIMSQGFRVIELTCQLGGGCPEAFAVYEL 204
E+ L E + + F +E+ + GG F V
Sbjct: 243 SLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFGNVEVLAKNGG-----FKVLRA 297
Query: 205 I 205
Sbjct: 298 K 298
|
Length = 300 |
| >gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 7e-04
Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 26/118 (22%)
Query: 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVE-------ANGLGGR 103
D +L+ G G G + AR GA +VV +D+ P + VE GL G
Sbjct: 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQM------VEEARERAPEAGLAGN 113
Query: 104 VEVRELVWGSDDLSQLSELGEFDMVIMSDVF--YDPEEMVGLGKTLKRVCGTGRHTVV 159
+ DL L G FD V+ DV Y E+ + L + R +++
Sbjct: 114 ITFE-----VGDLESLL--GRFDTVVCLDVLIHYPQEDAARM---LAHLASLTRGSLI 161
|
Length = 230 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.001
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVW 111
VL++G G G + ARL RV D+ P + L LG R+ +
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQ--- 57
Query: 112 GSDDLSQLSELGEFDMVIMSDVFYDPEEMV 141
D L L FD V + D E++
Sbjct: 58 -GDAPDALDLLEGFDAVFIGGGGGDLLELL 86
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.001
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINN-VEANGLGGRVEVREL 109
+ K VL+ G G GL + A+ GA V D+ + + N + + G VE
Sbjct: 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVE---- 107
Query: 110 VWGSDDLSQLSELGEFDMVIMSDVF-YDPEEMVGLGKTLKRVCGTGRHTVVWAVS 163
+ +DL L GEFD+V+ DV + P + K L + + V++ +
Sbjct: 108 -FEVNDLLSLC--GEFDIVVCMDVLIHYPAS--DMAKALGHLASLTKERVIFTFA 157
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219 |
| >gnl|CDD|223434 COG0357, GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.001
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 35 LWDSALILAQFISTHFDFQNKSVLELGAGAGLPGL 69
+ DS ++L + D + K VL++G+GAG PG+
Sbjct: 54 ILDSLVLLP-----YLDGKAKRVLDIGSGAGFPGI 83
|
Length = 215 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.002
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 54 NKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKPLLPGLIN-NVEANGLGGRVEVRELVW 111
VL+LG G G+ G A+ V + D+ N+ ANGL EV
Sbjct: 32 GGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLEN-GEVFW--- 87
Query: 112 GSDDLSQLSELGEFDMVIM 130
SD S + E G+FD++I
Sbjct: 88 -SDLYSAV-EPGKFDLIIS 104
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|202698 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95 | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.004
Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 14/109 (12%)
Query: 46 ISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLI-NNVEANGLGGRV 104
++ +F+ VL+L AG+G GL A GA VV + + N+EA GL G
Sbjct: 36 LAPYFEIGGARVLDLFAGSGALGLEALSRGAASVVFVEKDKKAVATLKENLEALGLEGET 95
Query: 105 EVRELVWGSDDLSQLSEL----GEFDMVIMSDVFYDPEEMVGLGKTLKR 149
V D L L FD+ VF DP GL +
Sbjct: 96 AVLRN----DAARALLRLAGKGPPFDL-----VFLDPPYAKGLIEEALE 135
|
Length = 183 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 218 | |||
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.85 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.83 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.82 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.77 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.76 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.71 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.71 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.71 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.7 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.7 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.69 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.69 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.68 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.68 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.68 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.67 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.67 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.66 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.66 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.66 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.65 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.64 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.64 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.63 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.63 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.63 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.63 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.62 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.62 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.62 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.61 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.61 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.6 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.6 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.6 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.6 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.59 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.59 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.58 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.58 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.57 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.57 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.57 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.56 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.56 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.56 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.56 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.56 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.55 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.55 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.55 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.55 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.54 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.54 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.54 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.53 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.53 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.53 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.53 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.52 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.52 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.52 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.52 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.52 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.51 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 99.51 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.51 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.5 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.5 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.48 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.48 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.47 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.46 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.46 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.46 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.45 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.45 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.45 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.44 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.44 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.43 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.43 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.43 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.43 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.43 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.43 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.43 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.43 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.43 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.42 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.42 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.42 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.42 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.42 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.41 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.41 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.41 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.41 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.4 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.4 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.4 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.4 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.4 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.39 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.38 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.38 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.38 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.38 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.37 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.37 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.37 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.37 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.36 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.35 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.35 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.35 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.35 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.35 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.35 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.34 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.34 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.34 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.34 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.33 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 99.33 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.33 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 99.32 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.31 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.31 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.31 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.31 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.3 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.28 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.28 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 99.28 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.27 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.27 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.26 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.25 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.24 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 99.24 | |
| PLN02476 | 278 | O-methyltransferase | 99.23 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.23 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.22 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.2 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.2 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.19 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.19 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.19 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.18 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 99.18 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.18 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.17 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.17 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 99.16 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.16 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.13 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.13 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.13 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 99.12 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.11 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.11 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.1 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 99.1 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.09 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 99.09 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.07 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 99.03 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.02 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.01 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.01 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.99 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.99 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.99 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.98 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.98 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.94 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.94 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.94 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.91 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.91 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.91 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.89 | |
| PLN02366 | 308 | spermidine synthase | 98.87 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.86 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.86 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.85 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.84 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.83 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.79 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 98.76 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.75 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.75 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.73 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.73 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.72 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.7 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.7 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.7 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.68 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.65 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.64 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.63 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.62 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.58 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.57 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.57 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.57 | |
| PLN02823 | 336 | spermine synthase | 98.56 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.55 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.54 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.53 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.49 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.45 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.44 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.42 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.42 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.41 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.38 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.38 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.37 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.35 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.35 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.34 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.33 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.33 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.31 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.29 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.26 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.24 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.23 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.2 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.18 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 98.14 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 98.11 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.11 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.1 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.08 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.07 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.06 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.05 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 98.04 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.04 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 98.02 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 98.01 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.99 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.95 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.93 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 97.88 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.87 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.86 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.76 | |
| PHA01634 | 156 | hypothetical protein | 97.75 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.72 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 97.69 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.67 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 97.67 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.65 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.61 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 97.49 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.49 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.44 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.43 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.38 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 97.33 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 97.26 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.26 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.22 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.2 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 97.14 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.04 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 97.01 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 97.0 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.97 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 96.94 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 96.93 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 96.81 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.8 | |
| PRK13699 | 227 | putative methylase; Provisional | 96.73 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 96.67 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 96.62 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 96.56 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.53 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.52 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 96.51 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.35 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 96.26 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 96.15 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 96.14 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 96.0 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 95.97 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 95.83 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 95.81 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 95.68 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.57 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.38 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 95.17 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 94.82 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 94.73 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 94.39 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.39 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.3 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 94.16 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 94.07 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 93.89 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 93.79 | |
| PF04378 | 245 | RsmJ: Ribosomal RNA small subunit methyltransferas | 93.68 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 93.51 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 93.45 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 93.41 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 93.36 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 93.17 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 93.01 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 92.98 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 92.69 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 92.61 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 92.02 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 91.77 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 91.75 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 91.19 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 91.08 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 90.95 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 90.92 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 90.63 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 90.14 | |
| KOG2497 | 262 | consensus Predicted methyltransferase [General fun | 90.04 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 89.82 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 89.46 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 89.38 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 89.37 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 89.24 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 89.08 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 89.01 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 88.98 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 88.93 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 88.92 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 88.85 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 88.77 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 88.49 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 87.73 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 87.73 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 87.41 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 86.69 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 86.51 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 86.51 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 86.29 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 86.27 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 86.25 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 86.09 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 85.62 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 84.67 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 84.61 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 84.25 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 83.81 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 83.74 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 83.56 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 83.1 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 82.83 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 82.82 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 82.61 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 82.46 | |
| KOG3350 | 217 | consensus Uncharacterized conserved protein [Funct | 82.46 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 82.32 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 82.24 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 81.53 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 81.23 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 81.17 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 81.13 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 80.93 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 80.72 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 80.43 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 80.34 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 80.14 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 80.05 |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-20 Score=145.26 Aligned_cols=178 Identities=19% Similarity=0.195 Sum_probs=139.6
Q ss_pred CeEEEEEeccCcCCCCccccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-h
Q 046623 10 GNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-L 87 (218)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~ 87 (218)
+..+.|.+.+.+|. +-..+..|+.|+.- ....+|||+|||+|.+++.+++. ...+++++|+++ +
T Consensus 15 ~~~~~I~q~~~~~~-----------~~~DaiLL~~~~~~---~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~ 80 (248)
T COG4123 15 FKQFFIIQDRCGFR-----------YGTDAILLAAFAPV---PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEA 80 (248)
T ss_pred ccceEEEeCCCccc-----------cccHHHHHHhhccc---ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHH
Confidence 34455666555444 44677888888765 34779999999999999999866 547999999999 9
Q ss_pred HHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCc------------------chHHHHHHHHH
Q 046623 88 LPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPE------------------EMVGLGKTLKR 149 (218)
Q Consensus 88 ~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~------------------~~~~~l~~~~~ 149 (218)
.+.|++|.+.|++..+++++..|+...... ....+||+|+||+|++... ..+++++.+.+
T Consensus 81 a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~--~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~ 158 (248)
T COG4123 81 AEMAQRNVALNPLEERIQVIEADIKEFLKA--LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAK 158 (248)
T ss_pred HHHHHHHHHhCcchhceeEehhhHHHhhhc--ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHH
Confidence 999999999999999999999998766432 1345799999999997532 37889999999
Q ss_pred HhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE-EccCCCCCCCceeEEEecCC
Q 046623 150 VCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL-TCQLGGGCPEAFAVYELIPP 207 (218)
Q Consensus 150 lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~-~~~~~~~~~~~~~l~~~~~~ 207 (218)
+||+||.+. ++... ....+.+..+ .+.+|...++ .++++.++...++|.+..+.
T Consensus 159 ~lk~~G~l~-~V~r~--erl~ei~~~l-~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~ 213 (248)
T COG4123 159 LLKPGGRLA-FVHRP--ERLAEIIELL-KSYNLEPKRIQFVYPKIGKAANRVLVEAIKG 213 (248)
T ss_pred HccCCCEEE-EEecH--HHHHHHHHHH-HhcCCCceEEEEecCCCCCcceEEEEEEecC
Confidence 999999433 33333 3455656666 8889999998 89999999999999766443
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.7e-20 Score=139.16 Aligned_cols=145 Identities=46% Similarity=0.682 Sum_probs=96.8
Q ss_pred ccccccchhHHHHHHHHhcC-------CCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcchHHHHHHHHHHhC--
Q 046623 30 LTGAWLWDSALILAQFISTH-------FDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKPLLPGLINNVEANG-- 99 (218)
Q Consensus 30 ~~g~~~w~~~~~l~~~l~~~-------~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~a~~~~~~~~-- 99 (218)
..|.++|+++..|++|+.+. ...++.+|||||||+|..++.+++. +..+|+.+|.++.++.++.|++.|+
T Consensus 15 ~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~ 94 (173)
T PF10294_consen 15 GTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSL 94 (173)
T ss_dssp --------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT---
T ss_pred CCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhcccc
Confidence 46889999999999999883 2367889999999999999999887 6679999999888899999999987
Q ss_pred CCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc-CChHHHHHHH
Q 046623 100 LGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR-TRTGDCLHEL 176 (218)
Q Consensus 100 ~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~-~~~~~~~~~~ 176 (218)
...++.+..+||.+..........+||+|++++++|..+..+.+++.+.++++++|. ++++...| ....+++..+
T Consensus 95 ~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~--vl~~~~~R~~~~~~F~~~~ 170 (173)
T PF10294_consen 95 LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGK--VLLAYKRRRKSEQEFFDRL 170 (173)
T ss_dssp -----EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TT--EEEEEE-S-TGGCHHHHHH
T ss_pred ccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCE--EEEEeCEecHHHHHHHHHh
Confidence 567799999999875422222446899999999999999999999999999999995 44444444 4455666555
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.9e-19 Score=133.64 Aligned_cols=146 Identities=23% Similarity=0.283 Sum_probs=113.4
Q ss_pred EEEEEeccCcCCCCccccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCC-eEEEecCcc-hHH
Q 046623 12 SIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGAT-RVVLTDVKP-LLP 89 (218)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~-~v~~~D~~~-~~~ 89 (218)
++++.+.+|||++...+ .++..|.+++... ++.+|||+|||+|.+++.+++.... +|+++|+++ +++
T Consensus 1 ~~~~~~~~gvFs~~~~d--------~~t~lL~~~l~~~---~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~ 69 (170)
T PF05175_consen 1 ELEFITHPGVFSPPRLD--------AGTRLLLDNLPKH---KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALE 69 (170)
T ss_dssp EEEEEEETTSTTTTSHH--------HHHHHHHHHHHHH---TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHH
T ss_pred CEEEEECCCeeCCCCCC--------HHHHHHHHHHhhc---cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHH
Confidence 47888899999966544 6777888888763 6779999999999999999887664 799999999 999
Q ss_pred HHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcc-----hHHHHHHHHHHhcCCCceEEEEEee
Q 046623 90 GLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEE-----MVGLGKTLKRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~-----~~~~l~~~~~lL~~gG~~~i~~~~~ 164 (218)
.+++|++.+++.+ ++++..|+.+.. +..+||+|++|+|++...+ ...+++.+.++|+|||.++++...
T Consensus 70 ~a~~n~~~n~~~~-v~~~~~d~~~~~-----~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~- 142 (170)
T PF05175_consen 70 LAKRNAERNGLEN-VEVVQSDLFEAL-----PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS- 142 (170)
T ss_dssp HHHHHHHHTTCTT-EEEEESSTTTTC-----CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET-
T ss_pred HHHHHHHhcCccc-cccccccccccc-----cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec-
Confidence 9999999999877 899988876543 4578999999999876543 688999999999999955554432
Q ss_pred ccCChHHHHHHH
Q 046623 165 VRTRTGDCLHEL 176 (218)
Q Consensus 165 ~~~~~~~~~~~~ 176 (218)
.......++..
T Consensus 143 -~~~~~~~l~~~ 153 (170)
T PF05175_consen 143 -HLGYERLLKEL 153 (170)
T ss_dssp -TSCHHHHHHHH
T ss_pred -CCChHHHHHHh
Confidence 23444445554
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-17 Score=131.79 Aligned_cols=147 Identities=22% Similarity=0.267 Sum_probs=112.6
Q ss_pred CeEEEEEeccCcCCCCccccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-h
Q 046623 10 GNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-L 87 (218)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~ 87 (218)
+.++++.+.+|||+....+ .++..|.+.+.. ..+.+|||+|||.|.+++.+++.. ..+++.+|.|. +
T Consensus 126 ~~~~~~~t~pGVFS~~~lD--------~GS~lLl~~l~~---~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~A 194 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLD--------KGSRLLLETLPP---DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARA 194 (300)
T ss_pred cCceEEEeCCCCCcCCCcC--------hHHHHHHHhCCc---cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHH
Confidence 7889999999999977655 566666665544 344599999999999999998664 47999999999 9
Q ss_pred HHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcc-----hHHHHHHHHHHhcCCCceEEEEE
Q 046623 88 LPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEE-----MVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 88 ~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~-----~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
++.+++|++.|+.++. ++...|.... ..++||.|++|+|||.... ..++++.+.+.|++||.+.+++.
T Consensus 195 v~~ar~Nl~~N~~~~~-~v~~s~~~~~------v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 195 VESARKNLAANGVENT-EVWASNLYEP------VEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HHHHHHhHHHcCCCcc-EEEEeccccc------ccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 9999999999998753 5555554333 2348999999999986422 34899999999999997777766
Q ss_pred eeccCChHHHHHHH
Q 046623 163 SEVRTRTGDCLHEL 176 (218)
Q Consensus 163 ~~~~~~~~~~~~~~ 176 (218)
.. ...+..++++
T Consensus 268 ~~--l~y~~~L~~~ 279 (300)
T COG2813 268 RH--LPYEKKLKEL 279 (300)
T ss_pred CC--CChHHHHHHh
Confidence 22 3344445544
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.2e-17 Score=135.84 Aligned_cols=141 Identities=21% Similarity=0.185 Sum_probs=110.0
Q ss_pred EEEEcCeEEEEEeccCcCCCCccccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhC-CCeEEEec
Q 046623 5 EIEIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLG-ATRVVLTD 83 (218)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D 83 (218)
++.+.+..+++...+|||+....+ .++.+|.+.+.. ..+.+|||+|||+|.+++.+++.. ..+|+++|
T Consensus 191 ~~~~~~~~~~~~~~~gVFs~~~LD--------~GtrllL~~lp~---~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD 259 (378)
T PRK15001 191 SWKLEGTDWTIHNHANVFSRTGLD--------IGARFFMQHLPE---NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVD 259 (378)
T ss_pred EEEEcCceEEEEecCCccCCCCcC--------hHHHHHHHhCCc---ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEE
Confidence 577889999999999999986655 666666666554 234699999999999999997653 46999999
Q ss_pred Ccc-hHHHHHHHHHHhCCC--CceEEEEeecCCCCccccccCCCCcEEEEcccccCC-----cchHHHHHHHHHHhcCCC
Q 046623 84 VKP-LLPGLINNVEANGLG--GRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP-----EEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 84 ~~~-~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~-----~~~~~~l~~~~~lL~~gG 155 (218)
.|+ +++.+++|++.++.. .++++...|..... +..+||+|++|+|+|.. ....+++..+.++|+|||
T Consensus 260 ~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~-----~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG 334 (378)
T PRK15001 260 ESPMAVASSRLNVETNMPEALDRCEFMINNALSGV-----EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKING 334 (378)
T ss_pred CCHHHHHHHHHHHHHcCcccCceEEEEEccccccC-----CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCC
Confidence 999 999999999888743 25677776654321 34579999999998753 235678899999999999
Q ss_pred ceEEEE
Q 046623 156 HTVVWA 161 (218)
Q Consensus 156 ~~~i~~ 161 (218)
.+.++.
T Consensus 335 ~L~iV~ 340 (378)
T PRK15001 335 ELYIVA 340 (378)
T ss_pred EEEEEE
Confidence 555553
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=117.21 Aligned_cols=136 Identities=21% Similarity=0.340 Sum_probs=103.1
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL 116 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 116 (218)
.+..|...+.. .++.+|||+|||+|.++..++..+. +++++|+++ +++.+++|+..++. +++++.+|+.+.
T Consensus 7 d~~~l~~~l~~---~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~-- 78 (179)
T TIGR00537 7 DSLLLEANLRE---LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKG-- 78 (179)
T ss_pred cHHHHHHHHHh---cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEcccccc--
Confidence 34555555543 4567899999999999999988876 999999999 99999999988875 378888887553
Q ss_pred cccccCCCCcEEEEcccccCCcc---------------------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHH
Q 046623 117 SQLSELGEFDMVIMSDVFYDPEE---------------------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHE 175 (218)
Q Consensus 117 ~~~~~~~~~D~Iv~~~~~~~~~~---------------------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~ 175 (218)
..++||+|++++|+++... ...+++.+.++|+|||.++++.. ......+.+..
T Consensus 79 ----~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~--~~~~~~~~~~~ 152 (179)
T TIGR00537 79 ----VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS--SLNGEPDTFDK 152 (179)
T ss_pred ----cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe--ccCChHHHHHH
Confidence 2358999999998864322 46789999999999994444332 22335566666
Q ss_pred HHHhCCcEEEEEE
Q 046623 176 LIMSQGFRVIELT 188 (218)
Q Consensus 176 ~~~~~gf~~~~~~ 188 (218)
+ .+.||....+.
T Consensus 153 l-~~~gf~~~~~~ 164 (179)
T TIGR00537 153 L-DERGFRYEIVA 164 (179)
T ss_pred H-HhCCCeEEEEE
Confidence 6 88999988873
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-15 Score=121.43 Aligned_cols=154 Identities=19% Similarity=0.225 Sum_probs=112.2
Q ss_pred EEEEeccCcCCCCccccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHH
Q 046623 13 IIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGL 91 (218)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a 91 (218)
+++...+++|-+. ..+..+..++......++.+|||+|||+|.+++.+++.+..+++++|+++ +++.+
T Consensus 7 ~~~~~~~g~~~p~-----------~ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a 75 (223)
T PRK14967 7 DALLRAPGVYRPQ-----------EDTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSA 75 (223)
T ss_pred ceeecCCCCcCCC-----------CcHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHH
Confidence 4556666777655 34566777776544456789999999999999999877666999999999 99999
Q ss_pred HHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcc---------------------hHHHHHHHHHH
Q 046623 92 INNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEE---------------------MVGLGKTLKRV 150 (218)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~---------------------~~~~l~~~~~l 150 (218)
++|+..++.. +.++..|+.+.. +.++||+|++++|+..... .+.+++.+.++
T Consensus 76 ~~n~~~~~~~--~~~~~~d~~~~~-----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 148 (223)
T PRK14967 76 RLNALLAGVD--VDVRRGDWARAV-----EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPAL 148 (223)
T ss_pred HHHHHHhCCe--eEEEECchhhhc-----cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHh
Confidence 9999888753 778877765431 4568999999987653211 45678889999
Q ss_pred hcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 151 CGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 151 L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
|++||.++++.... ....+.+..+ ++.+|.+...
T Consensus 149 Lk~gG~l~~~~~~~--~~~~~~~~~l-~~~g~~~~~~ 182 (223)
T PRK14967 149 LAPGGSLLLVQSEL--SGVERTLTRL-SEAGLDAEVV 182 (223)
T ss_pred cCCCcEEEEEEecc--cCHHHHHHHH-HHCCCCeEEE
Confidence 99999544433322 3445666665 8888876665
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.3e-16 Score=127.08 Aligned_cols=145 Identities=23% Similarity=0.382 Sum_probs=106.4
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEee
Q 046623 32 GAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELV 110 (218)
Q Consensus 32 g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d 110 (218)
|...++++..-.+++.+. ..++.+|||+|||||.+++.+++.|+.+++++|++| +++.++.|++.|++...++....+
T Consensus 142 GTG~HpTT~lcL~~Le~~-~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~ 220 (300)
T COG2264 142 GTGTHPTTSLCLEALEKL-LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFL 220 (300)
T ss_pred CCCCChhHHHHHHHHHHh-hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhccccc
Confidence 445566666666666553 247889999999999999999999999999999999 999999999999987422222211
Q ss_pred cCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEE
Q 046623 111 WGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELT 188 (218)
Q Consensus 111 ~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~ 188 (218)
. ......++||+|++|- +- .-...+...+.++++||| .++.+.......+.....+ ...||.+..+.
T Consensus 221 ~-----~~~~~~~~~DvIVANI-LA--~vl~~La~~~~~~lkpgg--~lIlSGIl~~q~~~V~~a~-~~~gf~v~~~~ 287 (300)
T COG2264 221 L-----LEVPENGPFDVIVANI-LA--EVLVELAPDIKRLLKPGG--RLILSGILEDQAESVAEAY-EQAGFEVVEVL 287 (300)
T ss_pred c-----hhhcccCcccEEEehh-hH--HHHHHHHHHHHHHcCCCc--eEEEEeehHhHHHHHHHHH-HhCCCeEeEEE
Confidence 1 1122346999999954 32 345678889999999999 4455555555555555555 88999998873
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.6e-17 Score=126.13 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=89.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||.|.++..+|+.|+ +|+++|+++ .++.|+....++++. +++.....++... ..++||+|+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~----~~~~FDvV~c 130 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLAS----AGGQFDVVTC 130 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHh----cCCCccEEEE
Confidence 6889999999999999999999996 999999999 999999999998865 5555544443332 3379999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR 166 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~ 166 (218)
.+++.|.++++.++..+.+++|||| .++.++..|
T Consensus 131 mEVlEHv~dp~~~~~~c~~lvkP~G--~lf~STinr 164 (243)
T COG2227 131 MEVLEHVPDPESFLRACAKLVKPGG--ILFLSTINR 164 (243)
T ss_pred hhHHHccCCHHHHHHHHHHHcCCCc--EEEEecccc
Confidence 9999999999999999999999999 444444434
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-16 Score=128.80 Aligned_cols=141 Identities=25% Similarity=0.423 Sum_probs=105.8
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEe
Q 046623 31 TGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVREL 109 (218)
Q Consensus 31 ~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~ 109 (218)
.|...++++..-.+++.+. ..++++|||+|||||.+++.+++.|+.+|+++|+++ +++.++.|++.|++..++.+.
T Consensus 140 FGTG~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~-- 216 (295)
T PF06325_consen 140 FGTGHHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS-- 216 (295)
T ss_dssp S-SSHCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--
T ss_pred ccCCCCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--
Confidence 4556678888888887764 346789999999999999999999999999999999 999999999999998766552
Q ss_pred ecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 110 VWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 110 d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
..... ...+||+|++|-.. ..+..++..+.++|+||| .++++........+..+.+ ++ ||.+...
T Consensus 217 --~~~~~----~~~~~dlvvANI~~---~vL~~l~~~~~~~l~~~G--~lIlSGIl~~~~~~v~~a~-~~-g~~~~~~ 281 (295)
T PF06325_consen 217 --LSEDL----VEGKFDLVVANILA---DVLLELAPDIASLLKPGG--YLILSGILEEQEDEVIEAY-KQ-GFELVEE 281 (295)
T ss_dssp --CTSCT----CCS-EEEEEEES-H---HHHHHHHHHCHHHEEEEE--EEEEEEEEGGGHHHHHHHH-HT-TEEEEEE
T ss_pred --Eeccc----ccccCCEEEECCCH---HHHHHHHHHHHHhhCCCC--EEEEccccHHHHHHHHHHH-HC-CCEEEEE
Confidence 11111 34889999996432 345678888899999999 5555666566666666655 65 9998776
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-15 Score=115.79 Aligned_cols=136 Identities=21% Similarity=0.172 Sum_probs=102.3
Q ss_pred CCCeEEEECCCCCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
++.+|||+|||+|..++.+++ .+..+|+++|+++ +++.++++.+.++..+ ++++.+|..+.. ..++||+|++
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~-----~~~~fDlV~~ 118 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFG-----QEEKFDVVTS 118 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCC-----CCCCccEEEE
Confidence 378999999999999998875 4456999999999 9999999999998865 899998876543 2468999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCCCCCCceeEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGGGCPEAFAVY 202 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~l~ 202 (218)
+.. ..+..+++.+.++|+|||.++++.. ......+..+-+..|+.+..+....-+|....+.+.
T Consensus 119 ~~~----~~~~~~l~~~~~~LkpGG~lv~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (187)
T PRK00107 119 RAV----ASLSDLVELCLPLLKPGGRFLALKG----RDPEEEIAELPKALGGKVEEVIELTLPGLDGERHLV 182 (187)
T ss_pred ccc----cCHHHHHHHHHHhcCCCeEEEEEeC----CChHHHHHHHHHhcCceEeeeEEEecCCCCCcEEEE
Confidence 642 5678999999999999995544432 233344444436679998888655555544434433
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-15 Score=123.98 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=105.3
Q ss_pred cchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 35 LWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 35 ~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
-|.+.......+......++++|||+|||+|.++..++..++.+|+++|+++ ++..+.......+...++.+..+++.+
T Consensus 103 e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~ 182 (314)
T TIGR00452 103 EWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ 182 (314)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH
Confidence 3666666666666555577899999999999999988888877899999999 876654332222222457777776655
Q ss_pred CCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEee---c------------------cCChHHH
Q 046623 114 DDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE---V------------------RTRTGDC 172 (218)
Q Consensus 114 ~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~---~------------------~~~~~~~ 172 (218)
.. ...+||+|+++.+++|..++..+++.++++|+|||.+++-.... . .....+
T Consensus 183 lp-----~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~- 256 (314)
T TIGR00452 183 LH-----ELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSA- 256 (314)
T ss_pred CC-----CCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHH-
Confidence 43 23579999999999999999999999999999999555431110 0 011333
Q ss_pred HHHHHHhCCcEEEEE
Q 046623 173 LHELIMSQGFRVIEL 187 (218)
Q Consensus 173 ~~~~~~~~gf~~~~~ 187 (218)
+...+++.||..+++
T Consensus 257 L~~~L~~aGF~~V~i 271 (314)
T TIGR00452 257 LKNWLEKVGFENFRI 271 (314)
T ss_pred HHHHHHHCCCeEEEE
Confidence 344459999998876
|
Known examples to date are restricted to the proteobacteria. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-16 Score=111.46 Aligned_cols=100 Identities=27% Similarity=0.337 Sum_probs=81.8
Q ss_pred CCCeEEEECCCCCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
|+.+|||+|||+|..++.+++ .+..+++++|+++ +++.+++++...+...+++++..|+ .... ...++||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~---~~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP---DFLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT---TTSSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc---ccCCCCCEEEE
Confidence 578999999999999999987 4556999999999 9999999997777778899999988 2111 14467999999
Q ss_pred cc-cccCC---cchHHHHHHHHHHhcCCCc
Q 046623 131 SD-VFYDP---EEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 131 ~~-~~~~~---~~~~~~l~~~~~lL~~gG~ 156 (218)
.. ..++. ++..++++.+.++|+|||.
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 106 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKPGGR 106 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcCCCcE
Confidence 88 33322 4568899999999999993
|
... |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.8e-16 Score=127.71 Aligned_cols=131 Identities=19% Similarity=0.180 Sum_probs=101.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..+++.+. +|+++|.++ +++.++.+....+...++.++.+|.++... ..++||+|++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~----~~~~FD~Vi~ 204 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD----EGRKFDAVLS 204 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh----ccCCCCEEEE
Confidence 3567999999999999999988765 899999999 999999887665544468888877655432 4578999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeec--------------------------cCChHHHHHHHHHhCCcEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV--------------------------RTRTGDCLHELIMSQGFRV 184 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~--------------------------~~~~~~~~~~~~~~~gf~~ 184 (218)
..+++|..+...+++.+.++|||||.+++...... +....+.+..++++.||.+
T Consensus 205 ~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i 284 (322)
T PLN02396 205 LEVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDV 284 (322)
T ss_pred hhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeE
Confidence 99999999999999999999999994443321100 0123455566669999999
Q ss_pred EEE
Q 046623 185 IEL 187 (218)
Q Consensus 185 ~~~ 187 (218)
.++
T Consensus 285 ~~~ 287 (322)
T PLN02396 285 KEM 287 (322)
T ss_pred EEE
Confidence 887
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=122.91 Aligned_cols=105 Identities=19% Similarity=0.228 Sum_probs=89.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..+++.+. +|+++|+++ +++.++++....++..++.++.+|+.+... ...++||+|++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~---~~~~~fD~V~~ 118 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ---HLETPVDLILF 118 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh---hcCCCCCEEEe
Confidence 3567999999999999999998865 999999999 999999999888876678898887765421 14578999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
..++++..++..+++.+.++|+|||.+++.
T Consensus 119 ~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 119 HAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred hhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 999999889999999999999999965544
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6e-16 Score=122.44 Aligned_cols=103 Identities=22% Similarity=0.212 Sum_probs=94.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
+|.+|||+|||||-.++.+++. |..+|+++|+|+ +++.+++.....+..+ ++++.+|.+..+. ++++||+|.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf----~D~sFD~vt~ 125 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPF----PDNSFDAVTI 125 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCC----CCCccCEEEe
Confidence 7899999999999999999754 556999999999 9999999998877766 9999999998886 8899999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+..+.+..+.++.++++.|.|||||+++++
T Consensus 126 ~fglrnv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 126 SFGLRNVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred eehhhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 999999999999999999999999966666
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.8e-15 Score=124.07 Aligned_cols=105 Identities=20% Similarity=0.199 Sum_probs=91.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..+++....+|+++|+++ +++.++++.+..+..+++.++.+|..+... +.++||+|++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~----~~~~FD~V~s 192 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF----EDGQFDLVWS 192 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC----CCCCccEEEE
Confidence 46789999999999999999875344999999999 999999999888877779999999876544 5678999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
...+++..+...+++++.++|||||.+++.
T Consensus 193 ~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 193 MESGEHMPDKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred CCchhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 999999899999999999999999955554
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-15 Score=125.95 Aligned_cols=132 Identities=27% Similarity=0.286 Sum_probs=99.7
Q ss_pred EEEEEeccCcCCCCccccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHH
Q 046623 12 SIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLP 89 (218)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~ 89 (218)
.+++...++||+....+ .++..+...+.. ....+|||+|||+|.++..+++.. ..+++++|+++ +++
T Consensus 166 ~l~i~~~pgvFs~~~lD--------~gt~lLl~~l~~---~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~ 234 (342)
T PRK09489 166 GLTVKTLPGVFSRDGLD--------VGSQLLLSTLTP---HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALE 234 (342)
T ss_pred CEEEEeCCCCCCCCCCC--------HHHHHHHHhccc---cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 46777788888865433 444555554432 234589999999999999998664 35899999999 999
Q ss_pred HHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC-----cchHHHHHHHHHHhcCCCceEEEEE
Q 046623 90 GLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP-----EEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~-----~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
.++.|++.+++. ..++..|.... ..++||+|++|+|+|.. .....++..+.++|+|||.+.++..
T Consensus 235 ~A~~nl~~n~l~--~~~~~~D~~~~------~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 235 SSRATLAANGLE--GEVFASNVFSD------IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred HHHHHHHHcCCC--CEEEEcccccc------cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 999999998865 46666665432 34689999999999863 3468899999999999996665544
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.7e-15 Score=122.64 Aligned_cols=146 Identities=21% Similarity=0.212 Sum_probs=104.9
Q ss_pred chhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 36 WDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 36 w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
|.+.......+......++++|||+|||+|..+..++..++.+|+++|.++ ++..++......+...++.++.+|+.+.
T Consensus 105 w~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l 184 (322)
T PRK15068 105 WRSDWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL 184 (322)
T ss_pred ehHHhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC
Confidence 555555444444444467889999999999999999888877899999999 7765444333222234588888887654
Q ss_pred CccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEee-----------cc----------CChHHHH
Q 046623 115 DLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE-----------VR----------TRTGDCL 173 (218)
Q Consensus 115 ~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~-----------~~----------~~~~~~~ 173 (218)
. ..++||+|++..++||..++..+++.+.+.|+|||.+++-.... .+ ....+..
T Consensus 185 p-----~~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~ 259 (322)
T PRK15068 185 P-----ALKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALK 259 (322)
T ss_pred C-----CcCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHH
Confidence 3 25679999999999999999999999999999999554321100 00 1233444
Q ss_pred HHHHHhCCcEEEEE
Q 046623 174 HELIMSQGFRVIEL 187 (218)
Q Consensus 174 ~~~~~~~gf~~~~~ 187 (218)
.++ .+.||...++
T Consensus 260 ~~L-~~aGF~~i~~ 272 (322)
T PRK15068 260 NWL-ERAGFKDVRI 272 (322)
T ss_pred HHH-HHcCCceEEE
Confidence 555 9999998887
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-15 Score=114.03 Aligned_cols=131 Identities=17% Similarity=0.205 Sum_probs=94.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|.+++.++... ..+|+++|.++ +++.++++.+.++.. +++++.+|+.+.. ..++||+|+
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~-----~~~~fD~I~ 114 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ-----HEEQFDVIT 114 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc-----ccCCccEEE
Confidence 457899999999999999987654 35899999999 999999999888875 4899998886642 357899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCC
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGG 193 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~ 193 (218)
++. + ..+..+++.+.++|+|||.++++.............+.+ ...||+.++.+....+
T Consensus 115 s~~-~---~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~~~~ 173 (181)
T TIGR00138 115 SRA-L---ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKC-QVLGVEPLEVPPLTGP 173 (181)
T ss_pred ehh-h---hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhh-hhcCceEeeccccCCC
Confidence 865 3 456778899999999999554442211111122222222 3468888887554443
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-14 Score=116.95 Aligned_cols=151 Identities=22% Similarity=0.306 Sum_probs=104.9
Q ss_pred EEcCeEEEEEeccCcCCCCccccccccccchhHHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCC-CeEEEecC
Q 046623 7 EIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGA-TRVVLTDV 84 (218)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~ 84 (218)
++.+-++.+ -++||-|.+ .+..|.+.+.. ...... +|||+|||||.+++.++.... .+|+++|+
T Consensus 77 ~f~gl~~~v--~~~vliPr~-----------dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Di 142 (280)
T COG2890 77 EFGGLRFKV--DEGVLIPRP-----------DTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDI 142 (280)
T ss_pred eecceeeee--CCCceecCC-----------chHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEEC
Confidence 344444444 447888774 33444444332 111112 899999999999999986654 59999999
Q ss_pred cc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCc-------------------------
Q 046623 85 KP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPE------------------------- 138 (218)
Q Consensus 85 ~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~------------------------- 138 (218)
|+ |++.|+.|+..+++ .++.++..||.... .++||+|++|+|+-..+
T Consensus 143 s~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~ 215 (280)
T COG2890 143 SPDALALARENAERNGL-VRVLVVQSDLFEPL------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLE 215 (280)
T ss_pred CHHHHHHHHHHHHHcCC-ccEEEEeeeccccc------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHH
Confidence 99 99999999999998 55667776776653 34899999999985432
Q ss_pred chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCc
Q 046623 139 EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGF 182 (218)
Q Consensus 139 ~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf 182 (218)
....++..+.+.|+||| ++++... ....+.+..++.+.++
T Consensus 216 ~~~~i~~~a~~~l~~~g--~l~le~g--~~q~~~v~~~~~~~~~ 255 (280)
T COG2890 216 VYRRILGEAPDILKPGG--VLILEIG--LTQGEAVKALFEDTGF 255 (280)
T ss_pred HHHHHHHhhHHHcCCCc--EEEEEEC--CCcHHHHHHHHHhcCC
Confidence 15668888889999988 3333222 3345556666688885
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-15 Score=111.47 Aligned_cols=104 Identities=20% Similarity=0.269 Sum_probs=87.4
Q ss_pred CCCeEEEECCCCCHHHHHHH-Hh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAA-RL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~-~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
++.+|||+|||+|.++..++ +. +..+++++|+++ +++.++++++..+.+ +++++.+|+.+... . .+ +.||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~-~-~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQ-E-LE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCG-C-SS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhcccc-c-cC-CCeeEEE
Confidence 56799999999999999998 43 346999999999 999999999998887 69999999988331 1 12 7899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
++.++++..+...+++.+.++|+++|.+++.
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~ 109 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIIS 109 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EcCchhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 9999999899999999999999999944333
|
... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-14 Score=112.03 Aligned_cols=102 Identities=22% Similarity=0.264 Sum_probs=84.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..+++.+. +|+++|+|+ +++.++++.+..++. ++++...|+.+.. ..++||+|++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~-----~~~~fD~I~~ 101 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLT-----FDGEYDFILS 101 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCC-----cCCCcCEEEE
Confidence 4567999999999999999998865 999999999 999999998887764 3777777776543 2457999999
Q ss_pred cccccCC--cchHHHHHHHHHHhcCCCceEEE
Q 046623 131 SDVFYDP--EEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 131 ~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+.++++. ++...+++.+.++|+|||.++++
T Consensus 102 ~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 102 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred ecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9887654 46789999999999999954444
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=116.79 Aligned_cols=110 Identities=19% Similarity=0.175 Sum_probs=94.8
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
....+|.+|||||||+|.+++.+|+.-..+|+++++|+ +.+.+++.++..|++.+++++..|+.+.. +.||-
T Consensus 68 l~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~-------e~fDr 140 (283)
T COG2230 68 LGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE-------EPFDR 140 (283)
T ss_pred cCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc-------cccce
Confidence 45578999999999999999999876444999999999 99999999999999888999998887653 44999
Q ss_pred EEEcccccCCcc--hHHHHHHHHHHhcCCCceEEEEEeec
Q 046623 128 VIMSDVFYDPEE--MVGLGKTLKRVCGTGRHTVVWAVSEV 165 (218)
Q Consensus 128 Iv~~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~~~~~~ 165 (218)
|++..++.+... ...+++.+.++|+|||.+++...+..
T Consensus 141 IvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 141 IVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP 180 (283)
T ss_pred eeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence 999999988654 99999999999999997776655443
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-15 Score=103.69 Aligned_cols=93 Identities=23% Similarity=0.280 Sum_probs=77.9
Q ss_pred EEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccC
Q 046623 58 LELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYD 136 (218)
Q Consensus 58 LDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~ 136 (218)
||+|||+|..+..+++.+..+++++|+++ +++.++++....+ +.+...|..+... +.++||+|+++..+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~----~~~sfD~v~~~~~~~~ 72 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPF----PDNSFDVVFSNSVLHH 72 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS-----TT-EEEEEEESHGGG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCcc----ccccccccccccceee
Confidence 89999999999999888666999999999 9999988875543 5688888887765 7789999999999999
Q ss_pred CcchHHHHHHHHHHhcCCCceE
Q 046623 137 PEEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 137 ~~~~~~~l~~~~~lL~~gG~~~ 158 (218)
.++...+++++.|+|||||.++
T Consensus 73 ~~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 73 LEDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp SSHHHHHHHHHHHHEEEEEEEE
T ss_pred ccCHHHHHHHHHHHcCcCeEEe
Confidence 8999999999999999999443
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=117.43 Aligned_cols=105 Identities=17% Similarity=0.109 Sum_probs=85.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CC-CeEEEecCcc-hHHHHHHHHHH--hCCCCceEEEEeecCCCCccccccCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GA-TRVVLTDVKP-LLPGLINNVEA--NGLGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~~D~~~-~~~~a~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
.++.+|||+|||+|.++..+++. +. .+|+++|+++ +++.++++... .....+++++.+|..+.+. +.++||
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~----~~~sfD 147 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF----DDCYFD 147 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC----CCCCEe
Confidence 46789999999999999888764 32 5899999999 99999876532 2222458899988876654 567899
Q ss_pred EEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.|+++..+++..++..++.++.++|||||.+++.
T Consensus 148 ~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 148 AITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred EEEEecccccCCCHHHHHHHHHHHcCcCcEEEEE
Confidence 9999999999899999999999999999955554
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-14 Score=112.99 Aligned_cols=104 Identities=19% Similarity=0.172 Sum_probs=86.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..+++. + ..+++++|+++ +++.++++.+..+. .+++++.+|...... +.++||+|
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~----~~~~fD~V 118 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPF----DDNSFDYV 118 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCC----CCCCccEE
Confidence 45789999999999999988754 3 35899999999 99999999887766 358888888766543 55789999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+++.++++.++..++++.+.++|+|||.+++.
T Consensus 119 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 119 TIGFGLRNVPDYMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred EEecccccCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 99988888889999999999999999954443
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-14 Score=118.48 Aligned_cols=139 Identities=21% Similarity=0.358 Sum_probs=100.4
Q ss_pred cchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 35 LWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 35 ~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
.++++....+++... ..++.+|||+|||+|.+++.+++.|+.+++++|+++ +++.+++|...+++...+.+...+...
T Consensus 142 ~h~tt~l~l~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~ 220 (288)
T TIGR00406 142 THPTTSLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ 220 (288)
T ss_pred CCHHHHHHHHHHHhh-cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc
Confidence 446666555555542 246789999999999999998888878999999999 999999999999887666666544211
Q ss_pred CCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 114 DDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 114 ~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
. ..++||+|+++... .....++..+.++|+||| .++++........+....+ .+. |.+..+
T Consensus 221 --~----~~~~fDlVvan~~~---~~l~~ll~~~~~~LkpgG--~li~sgi~~~~~~~v~~~~-~~~-f~~~~~ 281 (288)
T TIGR00406 221 --P----IEGKADVIVANILA---EVIKELYPQFSRLVKPGG--WLILSGILETQAQSVCDAY-EQG-FTVVEI 281 (288)
T ss_pred --c----cCCCceEEEEecCH---HHHHHHHHHHHHHcCCCc--EEEEEeCcHhHHHHHHHHH-Hcc-CceeeE
Confidence 1 34689999996542 345678899999999999 4444444444455555555 555 877665
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.5e-14 Score=108.25 Aligned_cols=140 Identities=22% Similarity=0.297 Sum_probs=102.7
Q ss_pred hhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCc-eEEEEeecCCC
Q 046623 37 DSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGR-VEVRELVWGSD 114 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~-~~~~~~d~~~~ 114 (218)
+.+..+..++.. .++.+|||+|||+|.++..+++.+ .+++++|+++ +++.+++++..++..++ +.++..|+.+.
T Consensus 10 ~~~~~l~~~~~~---~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~ 85 (188)
T PRK14968 10 EDSFLLAENAVD---KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP 85 (188)
T ss_pred hhHHHHHHhhhc---cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc
Confidence 555666666654 467799999999999999998775 5999999999 99999999988776543 77888877553
Q ss_pred CccccccCCCCcEEEEcccccCC---------------------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHH
Q 046623 115 DLSQLSELGEFDMVIMSDVFYDP---------------------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCL 173 (218)
Q Consensus 115 ~~~~~~~~~~~D~Iv~~~~~~~~---------------------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~ 173 (218)
. ...+||+|++++++... .....+++.+.++|+|||.++++.... ... +.+
T Consensus 86 ~-----~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~--~~~-~~l 157 (188)
T PRK14968 86 F-----RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL--TGE-DEV 157 (188)
T ss_pred c-----cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc--CCH-HHH
Confidence 2 33489999998887541 124668899999999999554444322 223 334
Q ss_pred HHHHHhCCcEEEEEE
Q 046623 174 HELIMSQGFRVIELT 188 (218)
Q Consensus 174 ~~~~~~~gf~~~~~~ 188 (218)
..++.+.||.+..+.
T Consensus 158 ~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 158 LEYLEKLGFEAEVVA 172 (188)
T ss_pred HHHHHHCCCeeeeee
Confidence 455588999887763
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-14 Score=115.75 Aligned_cols=104 Identities=22% Similarity=0.247 Sum_probs=82.2
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCc
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
....+|.+|||||||+|.+++.+++. |+ +|+++.+|+ ..+.+++.++..++.+++++...|+.+. ..+||
T Consensus 58 ~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~-------~~~fD 129 (273)
T PF02353_consen 58 LGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL-------PGKFD 129 (273)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----------S-S
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc-------CCCCC
Confidence 44468899999999999999999866 65 999999999 9999999999999988899998887543 23899
Q ss_pred EEEEcccccCC--cchHHHHHHHHHHhcCCCceEEE
Q 046623 127 MVIMSDVFYDP--EEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 127 ~Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.|++..++.+. .....+++.+.++|+|||.+++.
T Consensus 130 ~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 130 RIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp EEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred EEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999999886 56799999999999999966544
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.2e-15 Score=117.38 Aligned_cols=108 Identities=22% Similarity=0.212 Sum_probs=81.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..+++. + ..+|+++|+|+ +++.+++..+..+.. +++++.+|.++.+. ++++||.|
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~----~d~sfD~v 120 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPF----PDNSFDAV 120 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-----TT-EEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcC----CCCceeEE
Confidence 56789999999999999998764 3 25899999999 999999999887765 69999999888776 77999999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEee
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~ 164 (218)
++...+++..+....++++.|+|||||.++++-...
T Consensus 121 ~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 121 TCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp EEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred EHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 999999998999999999999999999666664444
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-15 Score=107.62 Aligned_cols=106 Identities=26% Similarity=0.267 Sum_probs=85.4
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 54 NKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
|.+|||+|||+|.+++.+++.+..+++++|+++ +++.++.++..++...+++++.+|+.+.. .....++||+|++|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--EPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH--HTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch--hhccCceeEEEEECC
Confidence 468999999999999999888756999999999 99999999999988778999999876543 112568899999999
Q ss_pred cccCC--------cchHHHHHHHHHHhcCCCceEEEE
Q 046623 133 VFYDP--------EEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 133 ~~~~~--------~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
|+... .....+++.+.++|+|||.+.++.
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 98742 235788999999999999555543
|
... |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-14 Score=111.91 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=82.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..++.+++.+. +|+++|+++ +++.++++.+.+++. +.+...|+.... ..++||+|++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~-----~~~~fD~I~~ 100 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAA-----LNEDYDFIFS 100 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcc-----ccCCCCEEEE
Confidence 4567999999999999999998875 999999999 999999988887764 666666654322 2357999999
Q ss_pred cccccCC--cchHHHHHHHHHHhcCCCceEEE
Q 046623 131 SDVFYDP--EEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 131 ~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+.++++. ++...+++.+.++|+|||.++++
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred ecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 8888764 46789999999999999954544
|
Part of a tellurite-reducing operon tehA and tehB |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-14 Score=112.22 Aligned_cols=128 Identities=22% Similarity=0.205 Sum_probs=100.0
Q ss_pred CeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 55 KSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
++|||+|||+|..+..+++.. ..+++++|+++ +++.+++++...++..++.+...|..... ..++||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~-----~~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP-----FPDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-----CCCCCCEeehHH
Confidence 479999999999999887653 45899999999 99999999988888778899988876543 235899999999
Q ss_pred cccCCcchHHHHHHHHHHhcCCCceEEEEEeec------------cCChHHHHHHHHHhCCcEEEEE
Q 046623 133 VFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV------------RTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 133 ~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~------------~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
++++..+...+++.+.++|+|||.+++...... .....+.+..++.+.||.+.+.
T Consensus 76 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 76 VIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred HHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEe
Confidence 999988999999999999999995444322110 0112233445558999999876
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-14 Score=114.21 Aligned_cols=134 Identities=21% Similarity=0.332 Sum_probs=97.4
Q ss_pred cchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 35 LWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 35 ~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
.++.+..+.+.+... ..++.+|||+|||+|.+++.+++.++.+++++|+++ +++.+++|++.+++...+.+..+
T Consensus 102 ~h~tt~~~l~~l~~~-~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~---- 176 (250)
T PRK00517 102 THPTTRLCLEALEKL-VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG---- 176 (250)
T ss_pred CCHHHHHHHHHHHhh-cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC----
Confidence 355666666666542 246789999999999999988888877799999999 99999999999876433333211
Q ss_pred CCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 114 DDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 114 ~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
..+||+|+++... .....++..+.++|+||| .+++.........+....+ .+.||.+..+
T Consensus 177 --------~~~fD~Vvani~~---~~~~~l~~~~~~~LkpgG--~lilsgi~~~~~~~v~~~l-~~~Gf~~~~~ 236 (250)
T PRK00517 177 --------DLKADVIVANILA---NPLLELAPDLARLLKPGG--RLILSGILEEQADEVLEAY-EEAGFTLDEV 236 (250)
T ss_pred --------CCCcCEEEEcCcH---HHHHHHHHHHHHhcCCCc--EEEEEECcHhhHHHHHHHH-HHCCCEEEEE
Confidence 1269999986432 345678899999999999 4444444444455555555 8899998876
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.5e-14 Score=114.18 Aligned_cols=112 Identities=14% Similarity=0.060 Sum_probs=86.0
Q ss_pred HHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccc
Q 046623 42 LAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLS 120 (218)
Q Consensus 42 l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (218)
...++......++.+|||+|||+|..+..+++....+|+++|+++ +++.++++... ..++.+..+|+.....
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~---- 113 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDF---- 113 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCC----
Confidence 333333333457789999999999999888754344999999999 99999887654 2458888888765443
Q ss_pred cCCCCcEEEEcccccCCc--chHHHHHHHHHHhcCCCceEEE
Q 046623 121 ELGEFDMVIMSDVFYDPE--EMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~~--~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+.++||+|++.+.+++.. +...+++.+.++|+|||.+++.
T Consensus 114 ~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 114 PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 567899999988776653 7899999999999999955443
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-13 Score=111.93 Aligned_cols=125 Identities=18% Similarity=0.185 Sum_probs=93.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
++.+|||+|||+|.+++.+++.. ..+++++|+|+ +++.+++|++.+++.+++.++.+|+.+.. +.++||+|++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~-----~~~~fD~Iv~ 195 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL-----PGRKYDLIVS 195 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc-----CCCCccEEEE
Confidence 45689999999999999998653 35999999999 99999999999988777999998875432 3457999999
Q ss_pred cccccCCc-------------------------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEE
Q 046623 131 SDVFYDPE-------------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 131 ~~~~~~~~-------------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~ 185 (218)
|+|+.... ....++..+.++|+|||. +++... ... +.+..++.+.+|.+.
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~--l~~e~g--~~~-~~v~~~~~~~~~~~~ 270 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGV--LVVEVG--NSM-EALEEAYPDVPFTWL 270 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE--EEEEEC--cCH-HHHHHHHHhCCCcee
Confidence 98874321 135678888999999993 333322 223 345555577888775
Q ss_pred EE
Q 046623 186 EL 187 (218)
Q Consensus 186 ~~ 187 (218)
..
T Consensus 271 ~~ 272 (284)
T TIGR03533 271 EF 272 (284)
T ss_pred ee
Confidence 44
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-13 Score=114.41 Aligned_cols=141 Identities=20% Similarity=0.292 Sum_probs=99.4
Q ss_pred hhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 37 DSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
+.+..+.+.+.... .++.+|||+|||+|.+++.+++. +..+++++|+|+ +++.+++|++.++. ++.++.+|+.+.
T Consensus 236 peTE~LVe~aL~~l-~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~ 312 (423)
T PRK14966 236 PETEHLVEAVLARL-PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDT 312 (423)
T ss_pred ccHHHHHHHhhhcc-CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhcc
Confidence 44455666655421 24569999999999999998754 456999999999 99999999988874 589999988654
Q ss_pred CccccccCCCCcEEEEcccccCCc-------------------------chHHHHHHHHHHhcCCCceEEEEEeeccCCh
Q 046623 115 DLSQLSELGEFDMVIMSDVFYDPE-------------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRT 169 (218)
Q Consensus 115 ~~~~~~~~~~~D~Iv~~~~~~~~~-------------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~ 169 (218)
... ..++||+|++|+|+.... ....+++.+.+.|+|||.+++-+ . ...
T Consensus 313 ~l~---~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi--G--~~Q 385 (423)
T PRK14966 313 DMP---SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH--G--FDQ 385 (423)
T ss_pred ccc---cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE--C--ccH
Confidence 320 235799999999874321 13467777788999999332222 2 344
Q ss_pred HHHHHHHHHhCCcEEEEE
Q 046623 170 GDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 170 ~~~~~~~~~~~gf~~~~~ 187 (218)
.+.+..++.+.||....+
T Consensus 386 ~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 386 GAAVRGVLAENGFSGVET 403 (423)
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 455666658889875554
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.5e-13 Score=107.50 Aligned_cols=105 Identities=21% Similarity=0.189 Sum_probs=87.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..++.... .+++++|+++ +++.+++++..++...++.+..+|+.+... ..++||+|
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~I 125 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF----PDNSFDAV 125 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC----CCCCccEE
Confidence 3568999999999999999877653 6999999999 999999998776555668888888766543 45689999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+++..+++..+...+++.+.++|+|||.+++.
T Consensus 126 ~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 126 TIAFGLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred EEecccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 99988888899999999999999999954443
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.1e-15 Score=117.07 Aligned_cols=98 Identities=21% Similarity=0.276 Sum_probs=79.5
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCC-----ceEEEEeecCCCCccccccCCCCcE
Q 046623 54 NKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGG-----RVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
|.+|||+|||+|.++..+++.|+ .|+|+|.++ +++.|+......-..+ ++++...|.++. .+.||.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~-------~~~fDa 161 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL-------TGKFDA 161 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc-------ccccce
Confidence 47899999999999999999987 999999999 9999988854443322 244444444433 356999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i 159 (218)
|+|+.+++|.+++..++..+.++|+|+|++++
T Consensus 162 VvcsevleHV~dp~~~l~~l~~~lkP~G~lfi 193 (282)
T KOG1270|consen 162 VVCSEVLEHVKDPQEFLNCLSALLKPNGRLFI 193 (282)
T ss_pred eeeHHHHHHHhCHHHHHHHHHHHhCCCCceEe
Confidence 99999999999999999999999999994443
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.9e-13 Score=108.28 Aligned_cols=124 Identities=20% Similarity=0.180 Sum_probs=91.9
Q ss_pred CeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 55 KSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
.+|||+|||+|.+++.++... ..+++++|+++ +++.+++|+..++..++++++.+|+.+.. +..+||+|++|+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~-----~~~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL-----AGQKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC-----cCCCccEEEECC
Confidence 689999999999999998654 35999999999 99999999999888767999999886532 234799999998
Q ss_pred cccCCc-------------------------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHH-hCCcEEEE
Q 046623 133 VFYDPE-------------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIM-SQGFRVIE 186 (218)
Q Consensus 133 ~~~~~~-------------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~-~~gf~~~~ 186 (218)
|+.... .+..++..+.++|+||| .+++... ....+.+..++. ..+|....
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG--~l~~e~g--~~q~~~~~~~~~~~~~~~~~~ 266 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNG--FLVCEIG--NWQQKSLKELLRIKFTWYDVE 266 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCC--EEEEEEC--ccHHHHHHHHHHhcCCCceeE
Confidence 774321 24567888899999999 3333322 334455555545 45775433
Q ss_pred E
Q 046623 187 L 187 (218)
Q Consensus 187 ~ 187 (218)
+
T Consensus 267 ~ 267 (284)
T TIGR00536 267 N 267 (284)
T ss_pred E
Confidence 3
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-13 Score=110.20 Aligned_cols=146 Identities=23% Similarity=0.245 Sum_probs=105.1
Q ss_pred chhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 36 WDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 36 w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
|.|...-.+.....++++|++|||||||+|..+..++..|++.|+|+|.+. ..-+........+....+......+++.
T Consensus 98 WrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~L 177 (315)
T PF08003_consen 98 WRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDL 177 (315)
T ss_pred ccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhc
Confidence 777777777777666789999999999999999999999999999999998 5544332222223222234443333333
Q ss_pred CccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE-----------EEeecc----------CChHHHH
Q 046623 115 DLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW-----------AVSEVR----------TRTGDCL 173 (218)
Q Consensus 115 ~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~-----------~~~~~~----------~~~~~~~ 173 (218)
. ..+.||+|++..++||..++-..+..+...|++||.+++= ..+..| +......
T Consensus 178 p-----~~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~ 252 (315)
T PF08003_consen 178 P-----NLGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALK 252 (315)
T ss_pred c-----ccCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHH
Confidence 2 3578999999999999999999999999999999944421 111111 2355555
Q ss_pred HHHHHhCCcEEEEE
Q 046623 174 HELIMSQGFRVIEL 187 (218)
Q Consensus 174 ~~~~~~~gf~~~~~ 187 (218)
.++ ++.||.-.++
T Consensus 253 ~wl-~r~gF~~v~~ 265 (315)
T PF08003_consen 253 NWL-ERAGFKDVRC 265 (315)
T ss_pred HHH-HHcCCceEEE
Confidence 555 9999998776
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-13 Score=109.23 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=94.6
Q ss_pred hHHHHHHHHhcC-C-CCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 38 SALILAQFISTH-F-DFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 38 ~~~~l~~~l~~~-~-~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
.+..+.+.+... . ...+.+|||+|||+|.+++.+++. +..+++++|+++ +++.+++|++.++ .+++.+|+.+
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~ 144 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYD 144 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechh
Confidence 344555554431 1 123458999999999999998754 445899999999 9999999998875 4678888765
Q ss_pred CCccccccCCCCcEEEEcccccCCc--------------------------chHHHHHHHHHHhcCCCceEEEEEeeccC
Q 046623 114 DDLSQLSELGEFDMVIMSDVFYDPE--------------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRT 167 (218)
Q Consensus 114 ~~~~~~~~~~~~D~Iv~~~~~~~~~--------------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~ 167 (218)
..... ..++||+|++|+|+.... .+..+++.+.++|+|||.+++. ... .
T Consensus 145 ~l~~~--~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~-~~~--~ 219 (251)
T TIGR03704 145 ALPTA--LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE-TSE--R 219 (251)
T ss_pred hcchh--cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE-ECc--c
Confidence 32111 135799999999875321 1357788888999999933332 222 2
Q ss_pred ChHHHHHHHHHhCCcEEEEE
Q 046623 168 RTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 168 ~~~~~~~~~~~~~gf~~~~~ 187 (218)
...+ +..++.+.||.....
T Consensus 220 ~~~~-v~~~l~~~g~~~~~~ 238 (251)
T TIGR03704 220 QAPL-AVEAFARAGLIARVA 238 (251)
T ss_pred hHHH-HHHHHHHCCCCceee
Confidence 3334 444448889877655
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.7e-14 Score=126.56 Aligned_cols=148 Identities=20% Similarity=0.169 Sum_probs=109.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC-CceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG-GRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++++|||+|||+|.+++.+++.|+.+|+++|+|+ +++.+++|++.|++. .++.++.+|+.+.... ...+||+|+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~---~~~~fDlIi 613 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE---AREQFDLIF 613 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH---cCCCcCEEE
Confidence 35789999999999999999988887899999999 999999999999986 5789999887543211 245799999
Q ss_pred EcccccCC-----------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCC----C
Q 046623 130 MSDVFYDP-----------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGG----G 194 (218)
Q Consensus 130 ~~~~~~~~-----------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~----~ 194 (218)
+++|.+.. .++..++..+.++|+||| .++++...+... ...+.+ .+.|+.+..+.....+ -
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG--~l~~~~~~~~~~-~~~~~~-~~~g~~~~~i~~~~~~~Dhp~ 689 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGG--TLYFSNNKRGFK-MDEEGL-AKLGLKAEEITAKTLPPDFAR 689 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCC--EEEEEeCCccCC-hhHHHH-HhCCCeEEEEecCCCCCCCCC
Confidence 98886532 135678888999999999 333333332222 224444 7888988887433333 4
Q ss_pred CCCceeEEEecC
Q 046623 195 CPEAFAVYELIP 206 (218)
Q Consensus 195 ~~~~~~l~~~~~ 206 (218)
.++++.+|++..
T Consensus 690 ~~~~~~~~~~~~ 701 (702)
T PRK11783 690 NPKIHNCWLITH 701 (702)
T ss_pred CcccceeEEEec
Confidence 567788888764
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.5e-13 Score=104.38 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=96.5
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCc
Q 046623 50 FDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 50 ~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
...++.+|||+|||+|.+++.+++. + ..+|+++|+++ +++.+++|++.+++.+++.++.+|..+... ...+.||
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~---~~~~~~D 113 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILF---TINEKFD 113 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHh---hcCCCCC
Confidence 3357789999999999999998754 3 35899999999 999999999998865668888877654321 0236799
Q ss_pred EEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEcc
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQ 190 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~ 190 (218)
.|+++. ....+..+++.+.++|+|||.+++... ......+....+ ++.||....+.+.
T Consensus 114 ~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l-~~~g~~~~~~~~~ 171 (198)
T PRK00377 114 RIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSAL-ENIGFNLEITEVI 171 (198)
T ss_pred EEEECC---CcccHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHH-HHcCCCeEEEEEe
Confidence 999853 235678899999999999995443222 223445555555 8889865555333
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-13 Score=102.39 Aligned_cols=131 Identities=27% Similarity=0.312 Sum_probs=97.2
Q ss_pred HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc
Q 046623 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL 119 (218)
Q Consensus 41 ~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (218)
.+...+....+..+++|+|+|||||.+++.++..|+.+|+++|+++ +++.+++|.++.+ ..+.++..|..+
T Consensus 33 ~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~--g~v~f~~~dv~~------ 104 (198)
T COG2263 33 YILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL--GDVEFVVADVSD------ 104 (198)
T ss_pred HHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC--CceEEEEcchhh------
Confidence 3333333355678899999999999999999999999999999999 9999999998854 559999988765
Q ss_pred ccCCCCcEEEEcccccCCc--chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 120 SELGEFDMVIMSDVFYDPE--EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~~~~~--~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
...++|.+++|+||.... .-.+++..+.++-+ +++. .++....++++....+.|+.+...
T Consensus 105 -~~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~-----vVYs--iH~a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 105 -FRGKFDTVIMNPPFGSQRRHADRPFLLKALEISD-----VVYS--IHKAGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred -cCCccceEEECCCCccccccCCHHHHHHHHHhhh-----eEEE--eeccccHHHHHHHHHhcCCeEEEE
Confidence 446799999999997641 12344444444332 3333 333557778888778899776554
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-13 Score=110.00 Aligned_cols=141 Identities=21% Similarity=0.273 Sum_probs=100.2
Q ss_pred hhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 37 DSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
+.+..+.+.+.......+.+|||+|||+|.++..++.. +..+++++|+++ +++.++.++..++.. ++.++.+|+.+.
T Consensus 71 ~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~ 149 (251)
T TIGR03534 71 PDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEP 149 (251)
T ss_pred CChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhcc
Confidence 33444545444422234569999999999999999865 345899999999 999999999888775 588998887653
Q ss_pred CccccccCCCCcEEEEcccccCCcc--------------------------hHHHHHHHHHHhcCCCceEEEEEeeccCC
Q 046623 115 DLSQLSELGEFDMVIMSDVFYDPEE--------------------------MVGLGKTLKRVCGTGRHTVVWAVSEVRTR 168 (218)
Q Consensus 115 ~~~~~~~~~~~D~Iv~~~~~~~~~~--------------------------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~ 168 (218)
. +.++||+|++++|+..... ...+++.+.++|+|||.+++.. . ..
T Consensus 150 ~-----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~--~--~~ 220 (251)
T TIGR03534 150 L-----PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI--G--YD 220 (251)
T ss_pred C-----cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE--C--cc
Confidence 2 4578999999988764211 2467889999999999433322 2 23
Q ss_pred hHHHHHHHHHhCCcEEEEE
Q 046623 169 TGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 169 ~~~~~~~~~~~~gf~~~~~ 187 (218)
..+.+...+.+.||....+
T Consensus 221 ~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 221 QGEAVRALFEAAGFADVET 239 (251)
T ss_pred HHHHHHHHHHhCCCCceEE
Confidence 3344555558889976555
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.4e-14 Score=116.61 Aligned_cols=136 Identities=16% Similarity=0.057 Sum_probs=101.3
Q ss_pred HHHHHHHHhcC-CCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc
Q 046623 39 ALILAQFISTH-FDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL 116 (218)
Q Consensus 39 ~~~l~~~l~~~-~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 116 (218)
...++..+.+. ...++.+|||+|||+|.+.+.++..+. +++++|+++ ++..++.|++..+..+ +++...|..+...
T Consensus 167 ~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~ 244 (329)
T TIGR01177 167 DPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPL 244 (329)
T ss_pred CHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCc
Confidence 34556555542 224677999999999999998877765 899999999 9999999999988876 7888888876543
Q ss_pred cccccCCCCcEEEEcccccCC---------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 117 SQLSELGEFDMVIMSDVFYDP---------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 117 ~~~~~~~~~D~Iv~~~~~~~~---------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
..++||.|++++|+... .....+++.+.+.|+|||.++++.... ... ..++++.|| +...
T Consensus 245 ----~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~----~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 245 ----SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDL----ESLAEDAFR-VVKR 313 (329)
T ss_pred ----ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCH----HHHHhhcCc-chhe
Confidence 35789999999887532 125789999999999999666555432 222 233377899 6554
|
This family is found exclusively in the Archaea. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=120.20 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=85.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..++.+++....+++++|+|+ +++.++++.... ..++.+..+|+..... +.++||+|++
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~--~~~v~~~~~d~~~~~~----~~~~fD~I~s 338 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR--KCSVEFEVADCTKKTY----PDNSFDVIYS 338 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC--CCceEEEEcCcccCCC----CCCCEEEEEE
Confidence 45779999999999999988765445899999999 999998887533 3468999988876543 4578999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i 159 (218)
..++++..+...+++.+.++|+|||.+++
T Consensus 339 ~~~l~h~~d~~~~l~~~~r~LkpgG~l~i 367 (475)
T PLN02336 339 RDTILHIQDKPALFRSFFKWLKPGGKVLI 367 (475)
T ss_pred CCcccccCCHHHHHHHHHHHcCCCeEEEE
Confidence 99999999999999999999999994443
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-13 Score=112.53 Aligned_cols=128 Identities=16% Similarity=0.110 Sum_probs=96.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|..+..+++. +..+++++|.++ +++.++++... .+++++.+|+.+... +.++||+|+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~----~~~sFDvVI 183 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPF----PTDYADRYV 183 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCC----CCCceeEEE
Confidence 35679999999999998888654 446899999999 99998887643 247788888776543 457899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc-------------CChHHHHHHHHHhCCcEEEEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR-------------TRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~-------------~~~~~~~~~~~~~~gf~~~~~ 187 (218)
++.++++..+...+++++.++|+|||.+++....... ....+.+..++++.||...++
T Consensus 184 s~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred EcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 9999988888999999999999999955543221100 112344444559999998776
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.7e-13 Score=109.92 Aligned_cols=123 Identities=19% Similarity=0.171 Sum_probs=91.7
Q ss_pred CeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 55 KSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
.+|||+|||+|.+++.++.. +..+++++|+|+ +++.+++|++.+++.++++++.+|+.+.. +.++||+|++|+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l-----~~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL-----PGRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC-----CCCCccEEEECC
Confidence 68999999999999999765 346999999999 99999999999988777999998875432 345799999998
Q ss_pred cccCCc-------------------------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 133 VFYDPE-------------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 133 ~~~~~~-------------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
|+.... ....++..+.++|+|||.+ ++... ....+ +..++.+.+|.+...
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l--~~E~g--~~~~~-~~~~~~~~~~~~~~~ 284 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVL--VVEVG--NSRVH-LEEAYPDVPFTWLEF 284 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEE--EEEEC--cCHHH-HHHHHhhCCCEEEEe
Confidence 864321 1357788889999999933 33222 22333 555556777766554
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-13 Score=111.29 Aligned_cols=103 Identities=25% Similarity=0.288 Sum_probs=86.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..+++. +. .+|+++|+++ +++.++++....+.. ++.+..+|+..... +.++||+|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~----~~~~fD~V 150 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPV----ADNSVDVI 150 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCC----CCCceeEE
Confidence 46789999999999988877543 44 4799999999 999999999887764 58888888766543 45689999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i 159 (218)
+++.++++..+..++++.+.++|+|||.+++
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCCcEEEE
Confidence 9998888888889999999999999995554
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.1e-13 Score=99.70 Aligned_cols=167 Identities=14% Similarity=0.218 Sum_probs=120.1
Q ss_pred eccCcCCCCccccccccccchhHHHHHHHHhcCC----CCCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHH
Q 046623 17 ELDNVCDSVTGRPLTGAWLWDSALILAQFISTHF----DFQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLP 89 (218)
Q Consensus 17 ~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~----~~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~ 89 (218)
.+++||+|. +.++.|.+.+.... ......++|||||+|..+.++++. +...+.++|+|+ |++
T Consensus 14 ~f~dVYEPa-----------EDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~ 82 (209)
T KOG3191|consen 14 DFSDVYEPA-----------EDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALE 82 (209)
T ss_pred hhhhccCcc-----------chhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHH
Confidence 455788887 56677777776611 123568999999999999998654 335789999999 999
Q ss_pred HHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCc---------------------chHHHHHHHH
Q 046623 90 GLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPE---------------------EMVGLGKTLK 148 (218)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~---------------------~~~~~l~~~~ 148 (218)
..++.++.|+.. ++.+..|+.... ..++.|+++.|+|+--.+ -...++..+-
T Consensus 83 ~Tl~TA~~n~~~--~~~V~tdl~~~l-----~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~ 155 (209)
T KOG3191|consen 83 ATLETARCNRVH--IDVVRTDLLSGL-----RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVP 155 (209)
T ss_pred HHHHHHHhcCCc--cceeehhHHhhh-----ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhh
Confidence 999999999855 788888876654 338999999998874221 1566777788
Q ss_pred HHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCCCCCCceeEEEecC
Q 046623 149 RVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 149 ~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~l~~~~~ 206 (218)
.+|.|.| +++.....+....+.++.+ ++.||.....-. +....+...+++|.+
T Consensus 156 ~iLSp~G--v~Ylv~~~~N~p~ei~k~l-~~~g~~~~~~~~--Rk~~~E~l~ilkf~r 208 (209)
T KOG3191|consen 156 DILSPRG--VFYLVALRANKPKEILKIL-EKKGYGVRIAMQ--RKAGGETLSILKFTR 208 (209)
T ss_pred hhcCcCc--eEEeeehhhcCHHHHHHHH-hhcccceeEEEE--EecCCceEEEEEEEe
Confidence 8999999 5555555556777877755 899998766522 222334555565543
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.1e-14 Score=118.56 Aligned_cols=105 Identities=20% Similarity=0.104 Sum_probs=82.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC-CceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG-GRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++++|||+|||+|.+++.++..++.+|+++|+++ +++.+++|++.|++. .+++++.+|+.+.........++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 35789999999999999987776777999999999 999999999999985 4689999887654211111245799999
Q ss_pred EcccccCCc---------chHHHHHHHHHHhcCCCc
Q 046623 130 MSDVFYDPE---------EMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 130 ~~~~~~~~~---------~~~~~l~~~~~lL~~gG~ 156 (218)
+++|.+... .+..++..+.++|+|||.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~ 334 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGI 334 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 998876432 356667778899999993
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=6e-13 Score=117.12 Aligned_cols=125 Identities=14% Similarity=0.244 Sum_probs=93.4
Q ss_pred CCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 54 NKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
+.+|||+|||+|.+++.+++. +..+++++|+|+ +++.+++|+..+++.+++.++.+|+.... ..++||+|++|
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~-----~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI-----EKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC-----cCCCccEEEEC
Confidence 468999999999999988654 556999999999 99999999999888777899988875432 34579999999
Q ss_pred ccccCCc--------------------------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEE
Q 046623 132 DVFYDPE--------------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 132 ~~~~~~~--------------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~ 185 (218)
+|+.... .+..+++.+.++|+|||.+ ++... ....+.+..++.+.||...
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l--~lEig--~~q~~~v~~~~~~~g~~~~ 289 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKI--ILEIG--FKQEEAVTQIFLDHGYNIE 289 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEE--EEEEC--CchHHHHHHHHHhcCCCce
Confidence 8875321 1345677888899999933 33222 3344555655578888765
Q ss_pred EE
Q 046623 186 EL 187 (218)
Q Consensus 186 ~~ 187 (218)
.+
T Consensus 290 ~~ 291 (506)
T PRK01544 290 SV 291 (506)
T ss_pred EE
Confidence 54
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=110.72 Aligned_cols=96 Identities=18% Similarity=0.123 Sum_probs=79.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
..++.+|||+|||+|.++..+++. +..+|+++|+++ +++.+++. +++++.+|..+.. +.++||+|
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-----~~~~fD~v 93 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-----PKPDTDVV 93 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-----CCCCceEE
Confidence 356789999999999999998765 335899999999 99888653 2678888775432 45689999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i 159 (218)
+++.++++..+...+++.+.++|+|||.+++
T Consensus 94 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~ 124 (255)
T PRK14103 94 VSNAALQWVPEHADLLVRWVDELAPGSWIAV 124 (255)
T ss_pred EEehhhhhCCCHHHHHHHHHHhCCCCcEEEE
Confidence 9999999988999999999999999995554
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=107.75 Aligned_cols=127 Identities=14% Similarity=0.038 Sum_probs=93.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeec-CCCCccccccCCCCcEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVW-GSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~D~Iv 129 (218)
++.+|||+|||+|..+..+++. +..+++++|+++ +++.+++++..++. .++.++.+|+ .... .....++||.|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~--~~~~~~~~D~V~ 116 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLL--DMFPDGSLDRIY 116 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHH--HHcCccccceEE
Confidence 5679999999999999998765 345899999999 99999999988876 3588998887 3321 111456899999
Q ss_pred EcccccCC--------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEE
Q 046623 130 MSDVFYDP--------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 130 ~~~~~~~~--------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~ 185 (218)
++.+.... .....+++.+.++|+||| .+++.........+.+..+ .+.|+...
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG--~l~i~~~~~~~~~~~~~~~-~~~g~~~~ 177 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGG--EIHFATDWEGYAEYMLEVL-SAEGGFLV 177 (202)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcCCCC--EEEEEcCCHHHHHHHHHHH-HhCccccc
Confidence 86443211 125789999999999999 4444444445565666666 88887665
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.5e-13 Score=114.73 Aligned_cols=158 Identities=18% Similarity=0.129 Sum_probs=113.7
Q ss_pred HHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc
Q 046623 39 ALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL 116 (218)
Q Consensus 39 ~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 116 (218)
+..+.+.+.+ ....++.+|||+|||+|.+++.+++.+ .+|+++|+++ +++.|++|++.+++. +++++.+|+.+...
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhh
Confidence 3445555444 223466899999999999999998876 4999999999 999999999998875 48999999865321
Q ss_pred cccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE-EccCCCCC
Q 046623 117 SQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL-TCQLGGGC 195 (218)
Q Consensus 117 ~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~-~~~~~~~~ 195 (218)
......++||+|++++|... ....++.+.+ ++|++ +++++... ......+..+ .+.||.+.++ |+.+.|..
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~--ivyvSCnp-~tlaRDl~~L-~~~gY~l~~i~~~DmFP~T 431 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKR--IVYVSCNP-ATLARDAGVL-VEAGYRLKRAGMLDMFPHT 431 (443)
T ss_pred hhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCe--EEEEEeCh-HHhhccHHHH-hhCCcEEEEEEEeccCCCC
Confidence 11012457999999877532 3456666665 57776 44444332 3344555665 6789999998 99999988
Q ss_pred CCceeEEEecC
Q 046623 196 PEAFAVYELIP 206 (218)
Q Consensus 196 ~~~~~l~~~~~ 206 (218)
+....+..+.+
T Consensus 432 ~HvE~v~lL~r 442 (443)
T PRK13168 432 GHVESMALFER 442 (443)
T ss_pred CcEEEEEEEEe
Confidence 88888777654
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-12 Score=104.85 Aligned_cols=140 Identities=22% Similarity=0.304 Sum_probs=98.0
Q ss_pred hHHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 38 SALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 38 ~~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
.+..+.+.+.. ....++.+|||+|||+|.+++.++... ..+++++|+++ +++.+++|+. .....++.++.+|+...
T Consensus 92 ~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~ 170 (275)
T PRK09328 92 ETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEP 170 (275)
T ss_pred CcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCc
Confidence 33455555543 223466799999999999999997664 46899999999 9999999987 33335689998887543
Q ss_pred CccccccCCCCcEEEEcccccCCc--------------------------chHHHHHHHHHHhcCCCceEEEEEeeccCC
Q 046623 115 DLSQLSELGEFDMVIMSDVFYDPE--------------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTR 168 (218)
Q Consensus 115 ~~~~~~~~~~~D~Iv~~~~~~~~~--------------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~ 168 (218)
. ..++||+|++++|+.... ....+++.+.++|+|||.+++ ... ..
T Consensus 171 ~-----~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~--e~g--~~ 241 (275)
T PRK09328 171 L-----PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL--EIG--YD 241 (275)
T ss_pred C-----CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE--EEC--ch
Confidence 2 246899999998875321 135677888899999994333 222 23
Q ss_pred hHHHHHHHHHhCCcEEEEE
Q 046623 169 TGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 169 ~~~~~~~~~~~~gf~~~~~ 187 (218)
..+.+..++.+.||....+
T Consensus 242 ~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 242 QGEAVRALLAAAGFADVET 260 (275)
T ss_pred HHHHHHHHHHhCCCceeEE
Confidence 3455666668889974443
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-13 Score=109.19 Aligned_cols=97 Identities=19% Similarity=0.108 Sum_probs=79.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..++..+. +++++|+++ +++.++++.. ...++.+|+..... +.++||+|++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~----~~~~fD~V~s 109 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPL----ATATFDLAWS 109 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcC----CCCcEEEEEE
Confidence 3567999999999999988887664 999999999 9998887642 24567777766543 5578999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i 159 (218)
+.++++..++..++.++.++|+|||.+++
T Consensus 110 ~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~ 138 (251)
T PRK10258 110 NLAVQWCGNLSTALRELYRVVRPGGVVAF 138 (251)
T ss_pred CchhhhcCCHHHHHHHHHHHcCCCeEEEE
Confidence 99998888999999999999999994433
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=101.20 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=90.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|.+++.+++.. ..+++++|+++ +++.+++|++.++.. ++++..+|.... ..++||+|+
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~------~~~~~D~v~ 102 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIE------LPGKADAIF 102 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhh------cCcCCCEEE
Confidence 467799999999999999997654 36899999999 999999999888764 488887765321 235799999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
++... ..+..+++.+.++|+|||.+++ .........+....+ .+.||....+
T Consensus 103 ~~~~~---~~~~~~l~~~~~~Lk~gG~lv~--~~~~~~~~~~~~~~l-~~~g~~~~~~ 154 (187)
T PRK08287 103 IGGSG---GNLTAIIDWSLAHLHPGGRLVL--TFILLENLHSALAHL-EKCGVSELDC 154 (187)
T ss_pred ECCCc---cCHHHHHHHHHHhcCCCeEEEE--EEecHhhHHHHHHHH-HHCCCCcceE
Confidence 86543 3467889999999999994333 222223444555554 8889865444
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-13 Score=100.57 Aligned_cols=142 Identities=18% Similarity=0.245 Sum_probs=103.7
Q ss_pred hhHHHHHHHHhcCCC----CCC-CeEEEECCCCCHHHHHHHHhCCC-eEEEecCcc-hHHHHHHHHHHhCCCCceEEEEe
Q 046623 37 DSALILAQFISTHFD----FQN-KSVLELGAGAGLPGLTAARLGAT-RVVLTDVKP-LLPGLINNVEANGLGGRVEVREL 109 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~----~~~-~~vLDlG~G~G~~~~~l~~~~~~-~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~ 109 (218)
+....+.+|+..... .+. .+|||+|||.|.+...+++.+.. ..+++|.++ +++.|+..+++++.++.+.|...
T Consensus 46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~ 125 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL 125 (227)
T ss_pred cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEe
Confidence 455577777766211 222 39999999999999999887653 599999999 99999988899999888999999
Q ss_pred ecCCCCccccccCCCCcEEE---------EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhC
Q 046623 110 VWGSDDLSQLSELGEFDMVI---------MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQ 180 (218)
Q Consensus 110 d~~~~~~~~~~~~~~~D~Iv---------~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~ 180 (218)
|+.+... ..+.||+|. +++.- ....+..++..+.++|+|||+++|..+.. ...|..+.. ...
T Consensus 126 DI~~~~~----~~~qfdlvlDKGT~DAisLs~d~-~~~r~~~Y~d~v~~ll~~~gifvItSCN~---T~dELv~~f-~~~ 196 (227)
T KOG1271|consen 126 DITDPDF----LSGQFDLVLDKGTLDAISLSPDG-PVGRLVVYLDSVEKLLSPGGIFVITSCNF---TKDELVEEF-ENF 196 (227)
T ss_pred eccCCcc----cccceeEEeecCceeeeecCCCC-cccceeeehhhHhhccCCCcEEEEEecCc---cHHHHHHHH-hcC
Confidence 9987643 445566665 32111 12345778899999999999666665533 445555665 888
Q ss_pred CcEEEEE
Q 046623 181 GFRVIEL 187 (218)
Q Consensus 181 gf~~~~~ 187 (218)
+|.+...
T Consensus 197 ~f~~~~t 203 (227)
T KOG1271|consen 197 NFEYLST 203 (227)
T ss_pred CeEEEEe
Confidence 8988765
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-13 Score=112.42 Aligned_cols=102 Identities=22% Similarity=0.277 Sum_probs=83.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..++.+++.|. +|+++|+|+ +++.++++++.+++ ++.+...|+.... ..++||+|++
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~-----~~~~fD~I~~ 190 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS-----IQEEYDFILS 190 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc-----ccCCccEEEE
Confidence 3556999999999999999998875 999999999 99999999988876 3777777765432 3568999999
Q ss_pred cccccCC--cchHHHHHHHHHHhcCCCceEEEE
Q 046623 131 SDVFYDP--EEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 131 ~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+.++++. +....+++.+.++|+|||.++++.
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8888764 467889999999999999655543
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-12 Score=97.77 Aligned_cols=127 Identities=17% Similarity=0.139 Sum_probs=98.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
..++.+++|+|||+|..++.++..+ ..+++++|.++ +++..++|.++.+++ ++.++.+|.-+... ...++|.|
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~g~Ap~~L~----~~~~~dai 106 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD-NLEVVEGDAPEALP----DLPSPDAI 106 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEeccchHhhc----CCCCCCEE
Confidence 3578899999999999999998554 46999999999 999999999999964 59999887654432 23379999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCc-EEEEEEc
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGF-RVIELTC 189 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf-~~~~~~~ 189 (218)
++.-. ...+.+++.+...|+|||++++=. ..-+.....++++ ++.|+ ++.++.+
T Consensus 107 FIGGg----~~i~~ile~~~~~l~~ggrlV~na--itlE~~~~a~~~~-~~~g~~ei~~v~i 161 (187)
T COG2242 107 FIGGG----GNIEEILEAAWERLKPGGRLVANA--ITLETLAKALEAL-EQLGGREIVQVQI 161 (187)
T ss_pred EECCC----CCHHHHHHHHHHHcCcCCeEEEEe--ecHHHHHHHHHHH-HHcCCceEEEEEe
Confidence 99755 567899999999999999433333 2234555666666 89999 6666533
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-13 Score=104.24 Aligned_cols=105 Identities=24% Similarity=0.298 Sum_probs=82.9
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 50 FDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 50 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
...++.++||+|||.|..++.+|+.|. .|+++|.|+ +++.+.+.++..+++ ++....|+..... .+.||+|
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~-----~~~yD~I 98 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDF-----PEEYDFI 98 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS------TTTEEEE
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccc-----cCCcCEE
Confidence 345778999999999999999999988 899999999 999999988888876 8888888876653 4679999
Q ss_pred EEcccccC--CcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 129 IMSDVFYD--PEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 129 v~~~~~~~--~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
++.-++.+ .+...++++.+.+.++|||..++.+.
T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 98555543 56778899999999999996565544
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.6e-14 Score=105.36 Aligned_cols=128 Identities=31% Similarity=0.462 Sum_probs=106.2
Q ss_pred cccccchhHHHHHHHHhcCCC-CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEE
Q 046623 31 TGAWLWDSALILAQFISTHFD-FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRE 108 (218)
Q Consensus 31 ~g~~~w~~~~~l~~~l~~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~ 108 (218)
+..+.|.+++.+++|+...+. ..+++|||+|+|+|..++.+++.|+.+|++.|+++ ....+.-|.+.|++. +.+..
T Consensus 56 fwa~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~ 133 (218)
T COG3897 56 FWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTH 133 (218)
T ss_pred HHHHHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEee
Confidence 455789999999999998666 78999999999999999999999999999999999 999999999999965 77777
Q ss_pred eecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCCh
Q 046623 109 LVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRT 169 (218)
Q Consensus 109 ~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~ 169 (218)
.|... ....||++++++.+|+......++.+..++...|- .+++.++.|.+.
T Consensus 134 ~d~~g-------~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~--~vlvgdp~R~~l 185 (218)
T COG3897 134 ADLIG-------SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGA--AVLVGDPGRAYL 185 (218)
T ss_pred ccccC-------CCcceeEEEeeceecCchHHHHHHHHHHHHHhCCC--EEEEeCCCCCCC
Confidence 66544 34679999999999998888899996665555544 455666666653
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.7e-13 Score=100.81 Aligned_cols=95 Identities=24% Similarity=0.268 Sum_probs=74.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..++.+|||+|||+|.++..++..+. +++++|+++ +++. . . ......+..... .+.++||+|+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~------~----~-~~~~~~~~~~~~----~~~~~fD~i~ 83 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK------R----N-VVFDNFDAQDPP----FPDGSFDLII 83 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH------T----T-SEEEEEECHTHH----CHSSSEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh------h----h-hhhhhhhhhhhh----ccccchhhHh
Confidence 35678999999999999999988877 999999999 7776 1 1 222222212111 2668999999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
++.++++..++..+++.+.++|+|||.+++..
T Consensus 84 ~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 84 CNDVLEHLPDPEEFLKELSRLLKPGGYLVISD 115 (161)
T ss_dssp EESSGGGSSHHHHHHHHHHHCEEEEEEEEEEE
T ss_pred hHHHHhhcccHHHHHHHHHHhcCCCCEEEEEE
Confidence 99999999999999999999999999444443
|
... |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.3e-13 Score=108.61 Aligned_cols=98 Identities=17% Similarity=0.138 Sum_probs=80.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
..++.+|||+|||+|.++..+++. +..+++++|+++ +++.++++. .++.+..+|..... +..+||+|
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~-----~~~~fD~v 97 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQ-----PPQALDLI 97 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccC-----CCCCccEE
Confidence 356789999999999999988755 346999999999 999988764 34778887775432 34689999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i 159 (218)
+++.++++..+...+++.+.++|+|||.+++
T Consensus 98 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~ 128 (258)
T PRK01683 98 FANASLQWLPDHLELFPRLVSLLAPGGVLAV 128 (258)
T ss_pred EEccChhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 9999999888999999999999999994444
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.5e-13 Score=106.99 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=82.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHH---hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 52 FQNKSVLELGAGAGLPGLTAAR---LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~---~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.++.+|||+|||+|..+..+++ .+..+++++|+|+ +++.+++++...+...+++++.+|+.+.. ...+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~------~~~~D~ 128 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA------IENASM 128 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC------CCCCCE
Confidence 3667999999999999888865 2346999999999 99999999988777667899988876543 245899
Q ss_pred EEEcccccCCc--chHHHHHHHHHHhcCCCceEE
Q 046623 128 VIMSDVFYDPE--EMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 128 Iv~~~~~~~~~--~~~~~l~~~~~lL~~gG~~~i 159 (218)
|+++.++++.. +...+++.+.+.|+|||.+++
T Consensus 129 vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l 162 (247)
T PRK15451 129 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVL 162 (247)
T ss_pred EehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 99988887653 457899999999999993333
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-12 Score=92.27 Aligned_cols=100 Identities=22% Similarity=0.185 Sum_probs=78.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|..+..+++. +..+++++|+++ +++.++++++..+.. +++++..|...... ...++||.|+
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~D~v~ 93 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALE---DSLPEPDRVF 93 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccCh---hhcCCCCEEE
Confidence 35679999999999999999765 446999999999 999999999887765 47787777553221 1235899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~ 158 (218)
+..+. ....++++.+.++|+|||.++
T Consensus 94 ~~~~~---~~~~~~l~~~~~~Lk~gG~li 119 (124)
T TIGR02469 94 IGGSG---GLLQEILEAIWRRLRPGGRIV 119 (124)
T ss_pred ECCcc---hhHHHHHHHHHHHcCCCCEEE
Confidence 86543 345789999999999999433
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-14 Score=100.55 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=60.6
Q ss_pred EEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEccccc
Q 046623 58 LELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFY 135 (218)
Q Consensus 58 LDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~ 135 (218)
||+|||+|.++..+... +..+++++|+|+ +++.+++++....... ......+..+... ....++||+|++..+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFD--YDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS-----CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhh--cccccccceehhhhhHh
Confidence 79999999999988655 445999999999 9988888887765332 3333332222211 11235999999999999
Q ss_pred CCcchHHHHHHHHHHhcCCC
Q 046623 136 DPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 136 ~~~~~~~~l~~~~~lL~~gG 155 (218)
+.+++..+++.+.++|+|||
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG 97 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGG 97 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-
T ss_pred hhhhHHHHHHHHHHHcCCCC
Confidence 99999999999999999999
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.4e-12 Score=110.70 Aligned_cols=154 Identities=14% Similarity=0.081 Sum_probs=105.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..++.. + ..+++++|+++ +++.+++|++..|+.+ +.++..|............++||.|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccCCEE
Confidence 46789999999999999988754 2 35899999999 9999999999998864 8888888765431000134689999
Q ss_pred EEcccccCC------cc----------------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhC-CcEEE
Q 046623 129 IMSDVFYDP------EE----------------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQ-GFRVI 185 (218)
Q Consensus 129 v~~~~~~~~------~~----------------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~-gf~~~ 185 (218)
+++.|+... ++ ..++++.+.++|||||.++..+++.....-++.+..+++++ +|.+.
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~ 409 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLE 409 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEec
Confidence 998776421 11 46789999999999995555555554555556666665655 57644
Q ss_pred EEE--ccCCCCCCCceeEEEecC
Q 046623 186 ELT--CQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 186 ~~~--~~~~~~~~~~~~l~~~~~ 206 (218)
... .++.......+.+-++++
T Consensus 410 ~~~~~~~P~~~~~dGfF~a~l~k 432 (434)
T PRK14901 410 PPKQKIWPHRQDGDGFFMAVLRK 432 (434)
T ss_pred CCCCccCCCCCCCCcEEEEEEEe
Confidence 221 233333445555555543
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.2e-12 Score=108.85 Aligned_cols=131 Identities=14% Similarity=0.102 Sum_probs=94.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|..+..+++... .+|+++|+++ +++.+++|++.++.. +.++.+|...... ....++||.|+
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~--~~~~~~fD~Vl 318 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQ--WWDGQPFDRIL 318 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchh--hcccCCCCEEE
Confidence 4678999999999999999876643 5899999999 999999999998865 6788888764321 11346799999
Q ss_pred EcccccCCc----------------------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhC-CcEEEE
Q 046623 130 MSDVFYDPE----------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQ-GFRVIE 186 (218)
Q Consensus 130 ~~~~~~~~~----------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~-gf~~~~ 186 (218)
+++|+.... ...+++..+.++|+|||.+++.+++.....-++.+..+++++ +|....
T Consensus 319 ~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 319 LDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAELLD 398 (427)
T ss_pred ECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEec
Confidence 988765311 124789999999999995555454444444445555554443 565443
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-12 Score=101.66 Aligned_cols=98 Identities=22% Similarity=0.219 Sum_probs=77.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..+++. + ..+|+++|+++ +++.+++|+..++..++++++.+|..+... ...+||.|
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~----~~~~fD~I 146 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE----KHAPFDAI 146 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc----cCCCccEE
Confidence 46789999999999999888754 2 35899999999 999999999988877678999988765432 34689999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i 159 (218)
+++....+ +.+.+.+.|+|||.+++
T Consensus 147 i~~~~~~~------~~~~l~~~L~~gG~lvi 171 (205)
T PRK13944 147 IVTAAAST------IPSALVRQLKDGGVLVI 171 (205)
T ss_pred EEccCcch------hhHHHHHhcCcCcEEEE
Confidence 99766533 33577889999994433
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.1e-12 Score=99.71 Aligned_cols=102 Identities=20% Similarity=0.223 Sum_probs=83.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..+++... .+++++|+++ +++.++++.. ...++.+..+|..+... ..++||+|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~----~~~~~D~i 110 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF----EDNSFDAV 110 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC----CCCcEEEE
Confidence 4678999999999999998876655 4899999999 9988888765 22457888888766543 45689999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+++..+++..++..+++.+.++|+|||.+++.
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 111 TIAFGLRNVTDIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred EEeeeeCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 99888888889999999999999999955443
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-13 Score=112.04 Aligned_cols=101 Identities=20% Similarity=0.262 Sum_probs=88.6
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.+++++|||+|||+|.+++++|++|+.+|+++|.+...+.+.+.+..|++.+.++++.+.+++..+ |.+++|+|++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~L----P~eKVDiIvS 133 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIEL----PVEKVDIIVS 133 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEec----CccceeEEee
Confidence 478999999999999999999999999999999999669999999999999999999998887755 6789999996
Q ss_pred ---cccccCCcchHHHHHHHHHHhcCCC
Q 046623 131 ---SDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 131 ---~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
...+.....+..++-.-.++|+|||
T Consensus 134 EWMGy~Ll~EsMldsVl~ARdkwL~~~G 161 (346)
T KOG1499|consen 134 EWMGYFLLYESMLDSVLYARDKWLKEGG 161 (346)
T ss_pred hhhhHHHHHhhhhhhhhhhhhhccCCCc
Confidence 4455555677788888889999999
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-12 Score=102.87 Aligned_cols=98 Identities=18% Similarity=0.178 Sum_probs=80.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|.++..+++.+. .+++++|+++ ++..++++.. .++.++.+|+..... +.++||+|+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~----~~~~fD~vi 103 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPL----EDSSFDLIV 103 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCC----CCCceeEEE
Confidence 3457999999999999999887653 5789999999 8888876653 247788888776543 557899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~ 158 (218)
++.++++..+...+++.+.++|+|||.++
T Consensus 104 ~~~~l~~~~~~~~~l~~~~~~L~~~G~l~ 132 (240)
T TIGR02072 104 SNLALQWCDDLSQALSELARVLKPGGLLA 132 (240)
T ss_pred EhhhhhhccCHHHHHHHHHHHcCCCcEEE
Confidence 99999998899999999999999999433
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=110.54 Aligned_cols=109 Identities=23% Similarity=0.123 Sum_probs=89.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC-CceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG-GRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.+|++||++.|-||.+++.++..|+++|+.+|.|. +++.+++|++.|++. .++.++.+|+.+..........+||+|+
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 45899999999999999999999999999999999 999999999999985 4578998887665432222345899999
Q ss_pred EcccccCC---------cchHHHHHHHHHHhcCCCceEEE
Q 046623 130 MSDVFYDP---------EEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 130 ~~~~~~~~---------~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+.||-+.. .++..++..+.++|+|||.+++.
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~ 335 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTS 335 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 98887643 34778999999999999933333
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-12 Score=101.82 Aligned_cols=104 Identities=25% Similarity=0.188 Sum_probs=83.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhC--CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLG--ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~--~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
..++.+|||+|||+|.++..++... ..+++++|.++ +++.++++.... ..++.+...|...... ..++||+
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~----~~~~~D~ 90 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPF----PDGSFDA 90 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCC----CCCCceE
Confidence 3567899999999999999887652 35899999999 999888873332 2458888887765443 4578999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|++..++++..+...+++.+.++|+|||.+++.
T Consensus 91 v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 91 VRSDRVLQHLEDPARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred EEEechhhccCCHHHHHHHHHHHhcCCcEEEEE
Confidence 999999999899999999999999999955443
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.4e-12 Score=101.65 Aligned_cols=99 Identities=15% Similarity=0.105 Sum_probs=80.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh---CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL---GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~---~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.++.+|||+|||+|..+..+++. +..+++++|+++ +++.+++++...+...++.++.+|+..... ..+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~d~ 125 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI------KNASM 125 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC------CCCCE
Confidence 36679999999999999988764 345899999999 999999998776554568899888865532 45899
Q ss_pred EEEcccccCCc--chHHHHHHHHHHhcCCCc
Q 046623 128 VIMSDVFYDPE--EMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 128 Iv~~~~~~~~~--~~~~~l~~~~~lL~~gG~ 156 (218)
|+++.++++.. +...+++.+.+.|+|||.
T Consensus 126 v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~ 156 (239)
T TIGR00740 126 VILNFTLQFLPPEDRIALLTKIYEGLNPNGV 156 (239)
T ss_pred EeeecchhhCCHHHHHHHHHHHHHhcCCCeE
Confidence 99988887753 468899999999999993
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-12 Score=100.00 Aligned_cols=129 Identities=18% Similarity=0.159 Sum_probs=104.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CC------CeEEEecCcc-hHHHHHHHHHHhCCCCc--eEEEEeecCCCCcccccc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GA------TRVVLTDVKP-LLPGLINNVEANGLGGR--VEVRELVWGSDDLSQLSE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~------~~v~~~D~~~-~~~~a~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~ 121 (218)
.++.++||++||||-++..+.+. +. .+|+.+|+|+ ++..+++..++.++..+ +.++.+|.++.+. +
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF----d 174 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF----D 174 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCC----C
Confidence 45689999999999988877432 22 6899999999 99999999877766544 8999999888876 8
Q ss_pred CCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 122 LGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 122 ~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+++||...+..-+.+..++++.++++.|.|||||++.++-..+.. .+.+.++...+.|++.-+
T Consensus 175 d~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~---~~~l~~fy~~ysf~Vlpv 237 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVE---NEPLKWFYDQYSFDVLPV 237 (296)
T ss_pred CCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccc---cHHHHHHHHhhhhhhhch
Confidence 899999999888888899999999999999999988877664432 156677756666776443
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-12 Score=100.67 Aligned_cols=129 Identities=16% Similarity=0.083 Sum_probs=91.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
...++||||||+|.++..+++. +..+++++|+++ +++.+++++...++. ++.++.+|+.+... ...+.+.+|.|++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~-~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLD-KFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHH-hhCCCCceeEEEE
Confidence 3459999999999999988765 446899999999 999999999888775 58999988764321 1113458999998
Q ss_pred cccccCCc--------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCC-cEEEE
Q 046623 131 SDVFYDPE--------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQG-FRVIE 186 (218)
Q Consensus 131 ~~~~~~~~--------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~g-f~~~~ 186 (218)
+.+-.+.. ....+++.+.++|+||| .+++.+.......+....+ ...+ |....
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG--~l~~~td~~~~~~~~~~~~-~~~~~f~~~~ 155 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGG--VIHFKTDNEPLFEDMLKVL-SENDLFENTS 155 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHH-HhCCCeEecc
Confidence 75432221 12679999999999999 4444444444555555555 5544 66543
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-11 Score=103.09 Aligned_cols=141 Identities=15% Similarity=0.132 Sum_probs=102.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.+++.++..+ .+|+++|.++ +++.+++|++.+++ .+++++.+|+.+.... ..+.||+|++
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~---~~~~~D~Vv~ 246 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATA---QGEVPDLVLV 246 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHh---cCCCCeEEEE
Confidence 356899999999999999999876 4999999999 99999999999988 4589999887653211 2346999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE-EccCCCCCCCceeEEEecC
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL-TCQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~-~~~~~~~~~~~~~l~~~~~ 206 (218)
++|.. .....+++.+.+ ++|++ +++++... ......+..+ .||.+.++ |+.+.|.......+..+.+
T Consensus 247 dPPr~--G~~~~~~~~l~~-~~~~~--ivyvsc~p-~t~~rd~~~l---~~y~~~~~~~~DmFP~T~HvE~v~~l~r 314 (315)
T PRK03522 247 NPPRR--GIGKELCDYLSQ-MAPRF--ILYSSCNA-QTMAKDLAHL---PGYRIERVQLFDMFPHTAHYEVLTLLVR 314 (315)
T ss_pred CCCCC--CccHHHHHHHHH-cCCCe--EEEEECCc-ccchhHHhhc---cCcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence 87732 333445455443 56665 55544342 2333444544 58999988 8988888888777766653
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-13 Score=105.74 Aligned_cols=132 Identities=18% Similarity=0.162 Sum_probs=92.3
Q ss_pred ccccchhHHHHHHHHhc--CCC-CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEE
Q 046623 32 GAWLWDSALILAQFIST--HFD-FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVR 107 (218)
Q Consensus 32 g~~~w~~~~~l~~~l~~--~~~-~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~ 107 (218)
+..+.+++..+.+.+.+ .+. .++.++||+.||+|.+++++...|+.+|+.+|.++ ++..+++|++..+..+.+.++
T Consensus 18 ~~~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~ 97 (183)
T PF03602_consen 18 GDNTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVI 97 (183)
T ss_dssp --TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEE
T ss_pred CCCcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeee
Confidence 34455677777777666 223 68999999999999999999999999999999999 999999999999887778888
Q ss_pred EeecCCCCccccccCCCCcEEEEcccccCCcc-hHHHHHHHH--HHhcCCCceEEEEEeecc
Q 046623 108 ELVWGSDDLSQLSELGEFDMVIMSDVFYDPEE-MVGLGKTLK--RVCGTGRHTVVWAVSEVR 166 (218)
Q Consensus 108 ~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~-~~~~l~~~~--~lL~~gG~~~i~~~~~~~ 166 (218)
..|.............+||+|++.||+.. .. ..++++.+. .+|+++| ++++....+
T Consensus 98 ~~d~~~~l~~~~~~~~~fDiIflDPPY~~-~~~~~~~l~~l~~~~~l~~~~--~ii~E~~~~ 156 (183)
T PF03602_consen 98 KGDAFKFLLKLAKKGEKFDIIFLDPPYAK-GLYYEELLELLAENNLLNEDG--LIIIEHSKK 156 (183)
T ss_dssp ESSHHHHHHHHHHCTS-EEEEEE--STTS-CHHHHHHHHHHHHTTSEEEEE--EEEEEEETT
T ss_pred ccCHHHHHHhhcccCCCceEEEECCCccc-chHHHHHHHHHHHCCCCCCCE--EEEEEecCC
Confidence 87754333221124578999999666544 44 488888887 6889988 555554433
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-12 Score=98.69 Aligned_cols=125 Identities=15% Similarity=0.077 Sum_probs=88.9
Q ss_pred ccchhHHHHHHHHhc--CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEee
Q 046623 34 WLWDSALILAQFIST--HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELV 110 (218)
Q Consensus 34 ~~w~~~~~l~~~l~~--~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d 110 (218)
...++...+.+.+.+ ....++.+|||++||+|.+++.++..|+.+|+++|.++ +++.+++|++.++...+++++..|
T Consensus 28 ~~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D 107 (189)
T TIGR00095 28 STRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNS 107 (189)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehh
Confidence 344555555555444 12356889999999999999999998888999999999 999999999999887678889888
Q ss_pred cCCCCccccccCC-CCcEEEEcccccCCcchHHHHHHHHH--HhcCCCceEEEEE
Q 046623 111 WGSDDLSQLSELG-EFDMVIMSDVFYDPEEMVGLGKTLKR--VCGTGRHTVVWAV 162 (218)
Q Consensus 111 ~~~~~~~~~~~~~-~~D~Iv~~~~~~~~~~~~~~l~~~~~--lL~~gG~~~i~~~ 162 (218)
..+... ...... .+|+|+..||+ ......++++.+.+ +++++| ++++.
T Consensus 108 ~~~~l~-~~~~~~~~~dvv~~DPPy-~~~~~~~~l~~l~~~~~l~~~~--iiv~E 158 (189)
T TIGR00095 108 ALRALK-FLAKKPTFDNVIYLDPPF-FNGALQALLELCENNWILEDTV--LIVVE 158 (189)
T ss_pred HHHHHH-HhhccCCCceEEEECcCC-CCCcHHHHHHHHHHCCCCCCCe--EEEEE
Confidence 744321 111122 46777775554 44566777776654 677777 45544
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-12 Score=99.22 Aligned_cols=122 Identities=17% Similarity=0.073 Sum_probs=86.9
Q ss_pred chhHHHHHHHHhc-C-CCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecC
Q 046623 36 WDSALILAQFIST-H-FDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWG 112 (218)
Q Consensus 36 w~~~~~l~~~l~~-~-~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~ 112 (218)
.++...+.+.+.+ . ...++.+|||+|||+|.+++.++..++.+|+++|.++ +++.+++|++.+++. ++.++.+|+.
T Consensus 34 Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~ 112 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNAL 112 (199)
T ss_pred CcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHH
Confidence 4555555443333 1 1245679999999999999976555667999999999 999999999999875 5888888875
Q ss_pred CCCccccccCCCCcEEEEcccccCCcchHHHHHHHHH--HhcCCCceEEEEEee
Q 046623 113 SDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKR--VCGTGRHTVVWAVSE 164 (218)
Q Consensus 113 ~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~--lL~~gG~~~i~~~~~ 164 (218)
.... . ...+||+|++++|+. ......+++.+.+ +++|++ ++++...
T Consensus 113 ~~l~-~--~~~~fDlV~~DPPy~-~g~~~~~l~~l~~~~~l~~~~--iv~ve~~ 160 (199)
T PRK10909 113 SFLA-Q--PGTPHNVVFVDPPFR-KGLLEETINLLEDNGWLADEA--LIYVESE 160 (199)
T ss_pred HHHh-h--cCCCceEEEECCCCC-CChHHHHHHHHHHCCCcCCCc--EEEEEec
Confidence 4321 1 234699999988854 3556667677765 378888 5555543
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.8e-12 Score=98.94 Aligned_cols=123 Identities=22% Similarity=0.252 Sum_probs=100.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHH-hCC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAAR-LGA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~-~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|+|.|.|||.++..++. .+. .+|+..|+.+ .++.|++|++..++.+++.+...|..+... .+.||.|
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-----~~~vDav 167 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-----EEDVDAV 167 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc-----ccccCEE
Confidence 5789999999999999999984 343 6999999999 999999999999998889999888876653 3489999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
++ +.+++...++.+.++|+|||.+++++. .-.+.......+ ++.||.-.+.
T Consensus 168 ~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P--~veQv~kt~~~l-~~~g~~~ie~ 218 (256)
T COG2519 168 FL-----DLPDPWNVLEHVSDALKPGGVVVVYSP--TVEQVEKTVEAL-RERGFVDIEA 218 (256)
T ss_pred EE-----cCCChHHHHHHHHHHhCCCcEEEEEcC--CHHHHHHHHHHH-HhcCccchhh
Confidence 98 346788999999999999995555544 336677777777 8888875554
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-11 Score=107.18 Aligned_cols=132 Identities=16% Similarity=0.177 Sum_probs=94.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..++.+++. +..+++++|+++ +++.+++|++.+++.+ +.++.+|...... . ..++||+|
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~-~--~~~~fD~V 324 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVHE-K--FAEKFDKI 324 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccccc-h--hcccCCEE
Confidence 46779999999999999998754 346999999999 9999999999998865 8888888765421 0 12679999
Q ss_pred EEcccccCCc----------------------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhC-CcEEE
Q 046623 129 IMSDVFYDPE----------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQ-GFRVI 185 (218)
Q Consensus 129 v~~~~~~~~~----------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~-gf~~~ 185 (218)
++++|+.... ....+++.+.++|+|||.++..+++......+..+..+++++ .|...
T Consensus 325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~ 404 (444)
T PRK14902 325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELV 404 (444)
T ss_pred EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEe
Confidence 9988764321 124688999999999995443333333333444556554554 47765
Q ss_pred EE
Q 046623 186 EL 187 (218)
Q Consensus 186 ~~ 187 (218)
.+
T Consensus 405 ~~ 406 (444)
T PRK14902 405 PL 406 (444)
T ss_pred cc
Confidence 54
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.9e-12 Score=98.30 Aligned_cols=145 Identities=13% Similarity=0.043 Sum_probs=96.3
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhC-----------CCCceE
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANG-----------LGGRVE 105 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~-----------~~~~~~ 105 (218)
-...+.+++......++.+|||+|||.|..++.+|..|. +|+++|+|+ +++.+.+...... -..+++
T Consensus 19 p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 97 (213)
T TIGR03840 19 VNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIE 97 (213)
T ss_pred CCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceE
Confidence 445666676553223567999999999999999999887 899999999 9997533211000 013478
Q ss_pred EEEeecCCCCccccccCCCCcEEEEcccccCC--cchHHHHHHHHHHhcCCCceEEEEEeec--------cCChHHHHHH
Q 046623 106 VRELVWGSDDLSQLSELGEFDMVIMSDVFYDP--EEMVGLGKTLKRVCGTGRHTVVWAVSEV--------RTRTGDCLHE 175 (218)
Q Consensus 106 ~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~~~~~--------~~~~~~~~~~ 175 (218)
+..+|+.+.... ..+.||.|+-..++.+. +....+++.+.++|+|||.+++++.... .....+.+..
T Consensus 98 ~~~~D~~~~~~~---~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~ 174 (213)
T TIGR03840 98 IFCGDFFALTAA---DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEA 174 (213)
T ss_pred EEEccCCCCCcc---cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHH
Confidence 888888765431 23579999976655443 4567799999999999996555543321 1123344555
Q ss_pred HHHhCCcEEEEE
Q 046623 176 LIMSQGFRVIEL 187 (218)
Q Consensus 176 ~~~~~gf~~~~~ 187 (218)
++ ..+|.+..+
T Consensus 175 ~f-~~~~~i~~~ 185 (213)
T TIGR03840 175 LY-GGHYEIELL 185 (213)
T ss_pred Hh-cCCceEEEE
Confidence 52 346776665
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.3e-12 Score=117.56 Aligned_cols=173 Identities=21% Similarity=0.175 Sum_probs=114.3
Q ss_pred EEEeccCcCCCCccccccccccchhHHHHHHHHhcCCC--CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHH
Q 046623 14 IIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHFD--FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLP 89 (218)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~--~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~ 89 (218)
++...++|+-|. +.+..+.+.+...+. +++.+|||+|||+|.+++.+++. +..+++++|+|+ +++
T Consensus 88 ~~~V~p~VLIPR-----------peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~ 156 (1082)
T PLN02672 88 TMMEIPSIFIPE-----------DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVK 156 (1082)
T ss_pred ceeeCCCcccCc-----------hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHH
Confidence 344445677766 444455555433222 34679999999999999999765 346999999999 999
Q ss_pred HHHHHHHHhCCC---------------CceEEEEeecCCCCccccccCCCCcEEEEcccccCCcc---------------
Q 046623 90 GLINNVEANGLG---------------GRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEE--------------- 139 (218)
Q Consensus 90 ~a~~~~~~~~~~---------------~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~--------------- 139 (218)
.|+.|+..|++. ++++++.+|+.+.... ...+||+|++|+|+-...+
T Consensus 157 ~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~---~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~ 233 (1082)
T PLN02672 157 VAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD---NNIELDRIVGCIPQILNPNPEAMSKLVTENASEE 233 (1082)
T ss_pred HHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc---cCCceEEEEECCCcCCCcchhhcChhhhhccccc
Confidence 999999987542 4689999998754310 1236999999988632110
Q ss_pred -----------------------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHH-HHHHhCCcEEEEE--EccCCC
Q 046623 140 -----------------------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLH-ELIMSQGFRVIEL--TCQLGG 193 (218)
Q Consensus 140 -----------------------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~-~~~~~~gf~~~~~--~~~~~~ 193 (218)
+..++..+.++|+||| .+++... ....+.+. .+++..||....+ ..-.+.
T Consensus 234 ~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG--~l~lEiG--~~q~~~v~~~l~~~~gf~~~~~~~~~~~~~ 309 (1082)
T PLN02672 234 FLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMG--IMIFNMG--GRPGQAVCERLFERRGFRITKLWQTKINQA 309 (1082)
T ss_pred cccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCC--EEEEEEC--ccHHHHHHHHHHHHCCCCeeEEeeehhhhc
Confidence 2567778888999999 4444333 34445555 4668889988665 222333
Q ss_pred CCCCceeEEEe
Q 046623 194 GCPEAFAVYEL 204 (218)
Q Consensus 194 ~~~~~~~l~~~ 204 (218)
....+..|.++
T Consensus 310 ~~~~~~~~~~~ 320 (1082)
T PLN02672 310 ADTDISALVEI 320 (1082)
T ss_pred cccchHHHHHH
Confidence 34444444444
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-13 Score=94.07 Aligned_cols=93 Identities=26% Similarity=0.343 Sum_probs=73.6
Q ss_pred EEEECCCCCHHHHHHHHhC----CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 57 VLELGAGAGLPGLTAARLG----ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 57 vLDlG~G~G~~~~~l~~~~----~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
|||+|||+|.....+.... ..+++++|+++ +++.++++....+. .++++..|+.+... ..++||+|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~----~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPF----SDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHH----HSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcc----cCCCeeEEEEc
Confidence 7999999999999987652 26999999999 99999999988665 48999999876433 56799999994
Q ss_pred -ccccCC--cchHHHHHHHHHHhcCCC
Q 046623 132 -DVFYDP--EEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 132 -~~~~~~--~~~~~~l~~~~~lL~~gG 155 (218)
.++++. ++...+++.+.++++|||
T Consensus 75 ~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 75 GLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 435553 468899999999999987
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-11 Score=98.67 Aligned_cols=102 Identities=21% Similarity=0.294 Sum_probs=83.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..++.+|||+|||+|.++..+++.+. +++++|+++ +++.+++++...+. .+++...++.+... ...++||+|+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~fD~Ii 119 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAA---EHPGQFDVVT 119 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhh---hcCCCccEEE
Confidence 35678999999999999998887765 899999999 99999988877664 36677666544321 1346899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~ 158 (218)
++.++++..+...+++.+.++|+|||.++
T Consensus 120 ~~~~l~~~~~~~~~l~~~~~~L~~gG~l~ 148 (233)
T PRK05134 120 CMEMLEHVPDPASFVRACAKLVKPGGLVF 148 (233)
T ss_pred EhhHhhccCCHHHHHHHHHHHcCCCcEEE
Confidence 99999988899999999999999999443
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-11 Score=104.38 Aligned_cols=140 Identities=12% Similarity=0.126 Sum_probs=104.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.+++.++..+ .+|+++|+++ +++.+++|++.+++. +++++.+|+.+.... ...+||+|++
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~---~~~~~D~vi~ 306 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATA---QMSAPELVLV 306 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHh---cCCCCCEEEE
Confidence 356799999999999999998765 5899999999 999999999999885 589998887543211 1245999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE-EccCCCCCCCceeEEEec
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL-TCQLGGGCPEAFAVYELI 205 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~-~~~~~~~~~~~~~l~~~~ 205 (218)
++|.. .....+++.+.+ ++|++ +++++... ......+..+ .||.+..+ |+.+.|.......+..+.
T Consensus 307 DPPr~--G~~~~~l~~l~~-~~p~~--ivyvsc~p-~TlaRDl~~L---~gy~l~~~~~~DmFPqT~HvE~v~ll~ 373 (374)
T TIGR02085 307 NPPRR--GIGKELCDYLSQ-MAPKF--ILYSSCNA-QTMAKDIAEL---SGYQIERVQLFDMFPHTSHYEVLTLLV 373 (374)
T ss_pred CCCCC--CCcHHHHHHHHh-cCCCe--EEEEEeCH-HHHHHHHHHh---cCceEEEEEEeccCCCCCcEEEEEEEe
Confidence 87742 445667777764 68877 55554332 2344444544 68999998 899998888877776664
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.6e-12 Score=99.48 Aligned_cols=99 Identities=20% Similarity=0.110 Sum_probs=77.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
..++.+|||+|||+|..+..+++... .+|+++|+++ +++.+++++...++. +++++.+|...... ...+||+
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~~~~----~~~~fD~ 149 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQGWE----PLAPYDR 149 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcccCCc----ccCCCCE
Confidence 35778999999999999999886633 3699999999 999999999998874 58899888765432 3468999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|++..+.. .+.+.+.+.|+|||.+++.
T Consensus 150 Ii~~~~~~------~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 150 IYVTAAGP------KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred EEEcCCcc------cccHHHHHhcCcCcEEEEE
Confidence 99875543 3445678899999954443
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.6e-12 Score=103.31 Aligned_cols=129 Identities=18% Similarity=0.135 Sum_probs=91.3
Q ss_pred CCCeEEEECCCCCHH-HHHHH-Hh-CCCeEEEecCcc-hHHHHHHHHHH-hCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 53 QNKSVLELGAGAGLP-GLTAA-RL-GATRVVLTDVKP-LLPGLINNVEA-NGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~-~~~l~-~~-~~~~v~~~D~~~-~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
++++|+|+|||.|.+ ++.++ .. +..+++++|+++ +.+.|+++++. .++.++++|..+|..+... ..+.||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~----~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE----SLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc----ccCCcCE
Confidence 678999999998854 33333 33 446899999999 99999999964 7787889999998876432 3468999
Q ss_pred EEEcccccCC--cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 128 VIMSDVFYDP--EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 128 Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
|++. .+++. ++..++++.+.+.|+|||.+++=.+...|......+... .-.||++..+
T Consensus 199 VF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~-~~~gf~~~~~ 258 (296)
T PLN03075 199 VFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPC-DLRGFEVLSV 258 (296)
T ss_pred EEEe-cccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChh-hCCCeEEEEE
Confidence 9998 66554 789999999999999999333322222222222222222 2348888776
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.3e-11 Score=93.60 Aligned_cols=131 Identities=14% Similarity=0.107 Sum_probs=87.0
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 50 FDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 50 ~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
...++.+|||+|||+|..+..+++. +..+|+++|+++ +++.+.++++.. .++.++.+|...... .....++||+
T Consensus 69 ~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~-~~~l~~~~D~ 144 (226)
T PRK04266 69 PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPER-YAHVVEKVDV 144 (226)
T ss_pred CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcch-hhhccccCCE
Confidence 3357789999999999999999765 335899999999 998887776543 347888888654210 0112356999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEe---ecc----CChHHHHHHHHHhCCcEEEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVS---EVR----TRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~---~~~----~~~~~~~~~~~~~~gf~~~~~ 187 (218)
|++..+ .......+++.+.+.|||||.+++.+.. ..+ ....+....+ ++.||.....
T Consensus 145 i~~d~~--~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l-~~aGF~~i~~ 208 (226)
T PRK04266 145 IYQDVA--QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKL-EEGGFEILEV 208 (226)
T ss_pred EEECCC--ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHH-HHcCCeEEEE
Confidence 996422 1112345689999999999955552211 101 1122344444 8999999887
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-11 Score=96.89 Aligned_cols=154 Identities=17% Similarity=0.149 Sum_probs=106.6
Q ss_pred eEEEEEeccCcCCCCccccccccccchhHHHHHHHHhc---CCCCCCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc
Q 046623 11 NSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFIST---HFDFQNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP 86 (218)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~---~~~~~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~ 86 (218)
+++++.--++|+=|.++. ...+...+.. ....++..+||+|||+|..++.++ ..+...++++|.++
T Consensus 113 ~~l~l~~~pgVlIPRpET----------EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~ 182 (328)
T KOG2904|consen 113 GDLDLVCKPGVLIPRPET----------EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSK 182 (328)
T ss_pred CCceEEecCCeeecCccH----------HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccH
Confidence 456777777888877533 3333333322 112456689999999999999885 44567899999999
Q ss_pred -hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc-ccCCCCcEEEEcccccCCcc-------------------------
Q 046623 87 -LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL-SELGEFDMVIMSDVFYDPEE------------------------- 139 (218)
Q Consensus 87 -~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~D~Iv~~~~~~~~~~------------------------- 139 (218)
|+..|.+|+..+++.+++.++..+++....... ...+++|++++|+|+-..++
T Consensus 183 ~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~ 262 (328)
T KOG2904|consen 183 AAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYD 262 (328)
T ss_pred HHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhH
Confidence 999999999999999999999776655543322 24578999999998754322
Q ss_pred -hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHH
Q 046623 140 -MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHEL 176 (218)
Q Consensus 140 -~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~ 176 (218)
..-++..+.+.|+||| +++.....+..-......+
T Consensus 263 ~~~~~~~~a~R~Lq~gg--~~~le~~~~~~~~~lv~~~ 298 (328)
T KOG2904|consen 263 NLVHYWLLATRMLQPGG--FEQLELVERKEHSYLVRIW 298 (328)
T ss_pred HHHHHHHhhHhhcccCC--eEEEEecccccCcHHHHHH
Confidence 3345666788999999 5554444333333444444
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-11 Score=97.81 Aligned_cols=96 Identities=27% Similarity=0.334 Sum_probs=78.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..++..+. +++++|+++ ++..++++....+...++.+...|+... + ++||+|++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~-~~fD~ii~ 125 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL------C-GEFDIVVC 125 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC------C-CCcCEEEE
Confidence 4678999999999999999987765 899999999 9999999988776655688888776543 2 67999999
Q ss_pred cccccCC--cchHHHHHHHHHHhcCCC
Q 046623 131 SDVFYDP--EEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 131 ~~~~~~~--~~~~~~l~~~~~lL~~gG 155 (218)
..++++. .....++..+.+++++++
T Consensus 126 ~~~l~~~~~~~~~~~l~~i~~~~~~~~ 152 (219)
T TIGR02021 126 MDVLIHYPASDMAKALGHLASLTKERV 152 (219)
T ss_pred hhHHHhCCHHHHHHHHHHHHHHhCCCE
Confidence 8887653 346778888888887654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-11 Score=91.84 Aligned_cols=139 Identities=22% Similarity=0.191 Sum_probs=101.0
Q ss_pred CCCCccccccccccchhHHHHHHHHhc--CC-CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHH
Q 046623 22 CDSVTGRPLTGAWLWDSALILAQFIST--HF-DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEA 97 (218)
Q Consensus 22 ~~~~~~~~~~g~~~w~~~~~l~~~l~~--~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~ 97 (218)
|-.....-..|-.+.+++..+.+-+.+ .+ ...+.++||+.+|||.+++.+...|+.+++.+|.+. ++..+++|++.
T Consensus 9 ~kgr~L~~p~~~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~ 88 (187)
T COG0742 9 YKGRKLKTPDGPGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKA 88 (187)
T ss_pred ccCCcccCCCCCCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHH
Confidence 333333334455566788888888877 44 478999999999999999999999999999999999 99999999999
Q ss_pred hCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHH----HHHhcCCCceEEEEEee
Q 046623 98 NGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTL----KRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 98 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~----~~lL~~gG~~~i~~~~~ 164 (218)
.+...+..++..|.... ..+....+.||+|++.||+. .......+..+ ..+|+|+| ++++...
T Consensus 89 l~~~~~~~~~~~da~~~-L~~~~~~~~FDlVflDPPy~-~~l~~~~~~~~~~~~~~~L~~~~--~iv~E~~ 155 (187)
T COG0742 89 LGLEGEARVLRNDALRA-LKQLGTREPFDLVFLDPPYA-KGLLDKELALLLLEENGWLKPGA--LIVVEHD 155 (187)
T ss_pred hCCccceEEEeecHHHH-HHhcCCCCcccEEEeCCCCc-cchhhHHHHHHHHHhcCCcCCCc--EEEEEeC
Confidence 98777788888776622 11221233599999977765 33332222222 36799999 6666544
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-11 Score=94.73 Aligned_cols=136 Identities=15% Similarity=0.079 Sum_probs=91.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-C-CeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCcc-c---cccCCCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-A-TRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLS-Q---LSELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~-~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~---~~~~~~~ 125 (218)
.++.+|||+|||+|.++..+++.. . .+|+++|++++. .. ..++++.+|+.+.... . ....++|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----------~~-~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----------PI-VGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----------CC-CCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 467799999999999999887653 2 589999998721 12 2388999998775310 0 1145789
Q ss_pred cEEEEcccccCCcc-----------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE--EccCC
Q 046623 126 DMVIMSDVFYDPEE-----------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL--TCQLG 192 (218)
Q Consensus 126 D~Iv~~~~~~~~~~-----------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~--~~~~~ 192 (218)
|+|+++...+.... ...+++.+.++|+|||.+++... ......+++..+ ...|.-.++ |...+
T Consensus 119 D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~--~~~~~~~~l~~l--~~~f~~v~~~Kp~ssr 194 (209)
T PRK11188 119 QVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF--QGEGFDEYLREI--RSLFTKVKVRKPDSSR 194 (209)
T ss_pred CEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe--cCcCHHHHHHHH--HhCceEEEEECCcccc
Confidence 99999654433211 25688999999999995544333 234556666665 567777776 55555
Q ss_pred CCCCCceeEE
Q 046623 193 GGCPEAFAVY 202 (218)
Q Consensus 193 ~~~~~~~~l~ 202 (218)
....+.+.+.
T Consensus 195 ~~s~e~~~~~ 204 (209)
T PRK11188 195 ARSREVYIVA 204 (209)
T ss_pred ccCceeEEEe
Confidence 5566655553
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-11 Score=101.57 Aligned_cols=103 Identities=14% Similarity=0.178 Sum_probs=84.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..++.+++. +..+++++|.+++++.++++++..+..++++++.+|+.+... +.+|+|++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~------~~~D~v~~ 221 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESY------PEADAVLF 221 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCC------CCCCEEEe
Confidence 45679999999999999998765 446899999844999999999999888889999999875432 24799998
Q ss_pred cccccCCcc--hHHHHHHHHHHhcCCCceEEE
Q 046623 131 SDVFYDPEE--MVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 131 ~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~ 160 (218)
..++|+..+ ...+++++.+.|+|||++++.
T Consensus 222 ~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 222 CRILYSANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred EhhhhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 888886543 468999999999999966555
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.6e-12 Score=98.53 Aligned_cols=102 Identities=21% Similarity=0.188 Sum_probs=83.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..+++.+. +++++|.++ +++.++.++...+.. ++.+...|+.+.... ..++||+|++
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~---~~~~~D~i~~ 118 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEK---GAKSFDVVTC 118 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcC---CCCCccEEEe
Confidence 4577999999999999998887765 799999999 999999988876642 367777665543321 2368999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~ 158 (218)
+..+++..++..+++.+.++|++||.++
T Consensus 119 ~~~l~~~~~~~~~l~~~~~~L~~gG~l~ 146 (224)
T TIGR01983 119 MEVLEHVPDPQAFIRACAQLLKPGGILF 146 (224)
T ss_pred hhHHHhCCCHHHHHHHHHHhcCCCcEEE
Confidence 9999999999999999999999999443
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-11 Score=97.76 Aligned_cols=112 Identities=21% Similarity=0.184 Sum_probs=82.2
Q ss_pred hHHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHh-CC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 38 SALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARL-GA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 38 ~~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
++..+...+.+ ....++.+|||+|||+|..+..+++. +. .+|+++|+++ +++.++++++..+.. ++.++.+|...
T Consensus 60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~ 138 (212)
T PRK13942 60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTL 138 (212)
T ss_pred CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCccc
Confidence 33444444443 33357889999999999999888765 32 5899999999 999999999988764 58999988764
Q ss_pred CCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 114 DDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 114 ~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
... ...+||+|++..... .+.+.+.+.|+|||.+++.
T Consensus 139 ~~~----~~~~fD~I~~~~~~~------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 139 GYE----ENAPYDRIYVTAAGP------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCC----cCCCcCEEEECCCcc------cchHHHHHhhCCCcEEEEE
Confidence 432 457899999865432 3345677899999955444
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=100.73 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=96.2
Q ss_pred chhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecC
Q 046623 36 WDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWG 112 (218)
Q Consensus 36 w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~ 112 (218)
.+.+..+..++.. ..++.+|||+|||+|..+..++.. + ..+|+++|+++ +++.+++|++.+++. ++.+...|..
T Consensus 56 qd~~s~~~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~ 132 (264)
T TIGR00446 56 QEASSMIPPLALE--PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGR 132 (264)
T ss_pred ECHHHHHHHHHhC--CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHH
Confidence 4444444444333 246789999999999999988654 2 24899999999 999999999999875 3788877754
Q ss_pred CCCccccccCCCCcEEEEcccccCCc----------------------chHHHHHHHHHHhcCCCceEEEEEeeccCChH
Q 046623 113 SDDLSQLSELGEFDMVIMSDVFYDPE----------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTG 170 (218)
Q Consensus 113 ~~~~~~~~~~~~~D~Iv~~~~~~~~~----------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~ 170 (218)
.... ..+.||.|++++|+.... ...++++.+.++|+|||.++..+++.....-+
T Consensus 133 ~~~~----~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene 208 (264)
T TIGR00446 133 VFGA----AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENE 208 (264)
T ss_pred Hhhh----hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHH
Confidence 4322 335699999988875421 23468899999999999544434443333345
Q ss_pred HHHHHHHHhC
Q 046623 171 DCLHELIMSQ 180 (218)
Q Consensus 171 ~~~~~~~~~~ 180 (218)
+.++.+++.+
T Consensus 209 ~vv~~~l~~~ 218 (264)
T TIGR00446 209 AVVDYLLEKR 218 (264)
T ss_pred HHHHHHHHhC
Confidence 5666665543
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-12 Score=98.37 Aligned_cols=107 Identities=16% Similarity=0.090 Sum_probs=86.5
Q ss_pred HHhcCCCCCCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccC
Q 046623 45 FISTHFDFQNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSEL 122 (218)
Q Consensus 45 ~l~~~~~~~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 122 (218)
++.+.+.....+|.|||||+|..+..++ +.+...++|+|.|+ +++.|++.. .++.|..+|+..-. +.
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~-----p~ 90 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWK-----PE 90 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcC-----CC
Confidence 3334444566799999999999988886 55667999999999 999987664 45888888765543 67
Q ss_pred CCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 123 GEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
...|++++|.+++..++...++..+...|+|||.+.+-..
T Consensus 91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECC
Confidence 8899999999999999999999999999999994444433
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-11 Score=97.16 Aligned_cols=95 Identities=27% Similarity=0.417 Sum_probs=75.6
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..++.+|||+|||+|.++..+++.+. +++++|+++ +++.+++++...+...++.+..+|+.. ..++||+|+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~fD~v~ 132 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES-------LLGRFDTVV 132 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh-------ccCCcCEEE
Confidence 35677999999999999999988766 799999999 999999998887765568888877432 346799999
Q ss_pred EcccccCC--cchHHHHHHHHHHhcC
Q 046623 130 MSDVFYDP--EEMVGLGKTLKRVCGT 153 (218)
Q Consensus 130 ~~~~~~~~--~~~~~~l~~~~~lL~~ 153 (218)
+..++++. +....+++.+.+++++
T Consensus 133 ~~~~l~~~~~~~~~~~l~~l~~~~~~ 158 (230)
T PRK07580 133 CLDVLIHYPQEDAARMLAHLASLTRG 158 (230)
T ss_pred EcchhhcCCHHHHHHHHHHHHhhcCC
Confidence 99888653 4566777888776643
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-11 Score=92.71 Aligned_cols=144 Identities=18% Similarity=0.133 Sum_probs=93.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|.+++.+++. +..+++++|+++ +++.+++|++.++.. +++++.+|..+... . ....+|.++
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~-~--~~~~~d~v~ 114 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLA-Q--LAPAPDRVC 114 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHh-h--CCCCCCEEE
Confidence 46789999999999999998754 346999999999 999999999988874 48888877643211 0 123467776
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChH---HHHHHHHHhCCcEEEEEEccCCCCCCCceeEEEecC
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTG---DCLHELIMSQGFRVIELTCQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~---~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~l~~~~~ 206 (218)
+.. ......+++.+.++|+|||.+++.... ..... +.+..+ ...++.+.++..... ........|....
T Consensus 115 ~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 186 (196)
T PRK07402 115 IEG----GRPIKEILQAVWQYLKPGGRLVATASS--LEGLYAISEGLAQL-QARNIEVVQAAVNRL-ETRGFSQVFAAVD 186 (196)
T ss_pred EEC----CcCHHHHHHHHHHhcCCCeEEEEEeec--HHHHHHHHHHHHhc-CCCCceEEEEEhhhc-ccccCcCeeecCC
Confidence 532 245688999999999999954444332 22222 222222 345666666543221 1122344455555
Q ss_pred C
Q 046623 207 P 207 (218)
Q Consensus 207 ~ 207 (218)
|
T Consensus 187 p 187 (196)
T PRK07402 187 P 187 (196)
T ss_pred C
Confidence 5
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.7e-11 Score=103.39 Aligned_cols=142 Identities=16% Similarity=0.196 Sum_probs=96.7
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD 115 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 115 (218)
++..+..++.- .++.+|||+|||+|..+..+++. +..+++++|+++ +++.+++|++..++...+.+..+|.....
T Consensus 226 ~s~~~~~~L~~---~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~ 302 (426)
T TIGR00563 226 SAQWVATWLAP---QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS 302 (426)
T ss_pred HHHHHHHHhCC---CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc
Confidence 44455544432 46789999999999999998754 445999999999 99999999999887632333544433221
Q ss_pred ccccccCCCCcEEEEcccccCCc------c----------------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHH
Q 046623 116 LSQLSELGEFDMVIMSDVFYDPE------E----------------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCL 173 (218)
Q Consensus 116 ~~~~~~~~~~D~Iv~~~~~~~~~------~----------------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~ 173 (218)
. .....+||.|+++.|+.... + ..+++..+.++|+|||.+++.+++.....-+..+
T Consensus 303 ~--~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v 380 (426)
T TIGR00563 303 Q--WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQI 380 (426)
T ss_pred c--cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHH
Confidence 1 11346799999977764321 1 3679999999999999555555555444555556
Q ss_pred HHHHHhC-CcEE
Q 046623 174 HELIMSQ-GFRV 184 (218)
Q Consensus 174 ~~~~~~~-gf~~ 184 (218)
..++.++ +|.+
T Consensus 381 ~~~l~~~~~~~~ 392 (426)
T TIGR00563 381 KAFLQEHPDFPF 392 (426)
T ss_pred HHHHHhCCCCee
Confidence 6665554 4543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.8e-13 Score=107.11 Aligned_cols=104 Identities=24% Similarity=0.176 Sum_probs=80.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC-CceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG-GRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++++|||+.|-+|.+++.+++.|+.+|+.+|.|. +++.+++|++.|++. ..++++..|+.+... .....++||+|+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~-~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLK-RLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHH-HHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHH-HHhcCCCCCEEE
Confidence 46789999999999999999999988999999999 999999999999986 568899888765432 222456899999
Q ss_pred EcccccCC------cchHHHHHHHHHHhcCCCc
Q 046623 130 MSDVFYDP------EEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 130 ~~~~~~~~------~~~~~~l~~~~~lL~~gG~ 156 (218)
+.||-+.. .++..++..+.++|+|||.
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~ 233 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGL 233 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEE
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 98886542 3467788999999999993
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-11 Score=100.55 Aligned_cols=160 Identities=16% Similarity=0.160 Sum_probs=101.2
Q ss_pred CCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHh-CCCCceEEEEe-ecCCCCcccc-ccCCCCcE
Q 046623 53 QNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEAN-GLGGRVEVREL-VWGSDDLSQL-SELGEFDM 127 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~-~~~~~~~~~~~-d~~~~~~~~~-~~~~~~D~ 127 (218)
++.++||||||+|.+...++ +....+++++|+++ +++.|+.|++.| ++..++.+... |.... .... .+.+.||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i-~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAI-FKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhh-hhcccccCCceEE
Confidence 45799999999997777664 44446999999999 999999999999 78877877542 22111 1111 13568999
Q ss_pred EEEcccccCCcch-----HHHHHH----------------HHHHhcCCCceEEE------------------EEeeccCC
Q 046623 128 VIMSDVFYDPEEM-----VGLGKT----------------LKRVCGTGRHTVVW------------------AVSEVRTR 168 (218)
Q Consensus 128 Iv~~~~~~~~~~~-----~~~l~~----------------~~~lL~~gG~~~i~------------------~~~~~~~~ 168 (218)
|++|+|||....- ..-.+. ..+++.+||.+.++ +.-.....
T Consensus 193 ivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~ 272 (321)
T PRK11727 193 TLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKEN 272 (321)
T ss_pred EEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCC
Confidence 9999999864221 111111 22445566643333 11122345
Q ss_pred hHHHHHHHHHhCCcEEEEEEccCCCCCCCceeEEEecCCccccccc
Q 046623 169 TGDCLHELIMSQGFRVIELTCQLGGGCPEAFAVYELIPPMHEENFH 214 (218)
Q Consensus 169 ~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (218)
+....+.+ ++.|...+.+....+..+..+.+-|.|.....+..|.
T Consensus 273 l~~l~~~L-~~~~~~~~~~~e~~qG~~~~~~vaWsf~~~~~~~~~~ 317 (321)
T PRK11727 273 LPPLYRAL-KKVGAVEVKTIEMAQGQKQSRFIAWTFLDDEQRRRWV 317 (321)
T ss_pred HHHHHHHH-HHcCCceEEEEEEeCCCeeeEEEEeecCCHHHhHHHH
Confidence 66666666 8888866666444454555566669987765554443
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-11 Score=95.91 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=80.1
Q ss_pred HHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc
Q 046623 41 ILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ 118 (218)
Q Consensus 41 ~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (218)
.+..++.. ....++.+|||+|||+|..+..+++... +++++|+++ +++.++++++..++.+ +++..+|......
T Consensus 65 ~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~-- 140 (212)
T PRK00312 65 YMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKGWP-- 140 (212)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccCCC--
Confidence 33334333 3335678999999999999988877654 899999999 9999999999887754 8888888654322
Q ss_pred cccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 119 LSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 119 ~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
..++||+|++...+. .+.+.+.+.|+|||.+++.
T Consensus 141 --~~~~fD~I~~~~~~~------~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 141 --AYAPFDRILVTAAAP------EIPRALLEQLKEGGILVAP 174 (212)
T ss_pred --cCCCcCEEEEccCch------hhhHHHHHhcCCCcEEEEE
Confidence 347899999976543 3456678899999944443
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-11 Score=92.98 Aligned_cols=144 Identities=19% Similarity=0.237 Sum_probs=91.6
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 54 NKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
-.++||+|||.|.++..++... .+++++|+++ +++.++++.... .++++...|+.+.. +.++||+|+++.
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~-----P~~~FDLIV~SE 114 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFW-----PEGRFDLIVLSE 114 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT--------SS-EEEEEEES
T ss_pred cceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCC-----CCCCeeEEEEeh
Confidence 3589999999999999998774 5999999999 999999988654 45999998875543 778999999999
Q ss_pred cccCCc---chHHHHHHHHHHhcCCCceEEEEEeec-------cCChHHHHHHHHHhCCcEEEEEEccCCCCCCCceeEE
Q 046623 133 VFYDPE---EMVGLGKTLKRVCGTGRHTVVWAVSEV-------RTRTGDCLHELIMSQGFRVIELTCQLGGGCPEAFAVY 202 (218)
Q Consensus 133 ~~~~~~---~~~~~l~~~~~lL~~gG~~~i~~~~~~-------~~~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~l~ 202 (218)
++|+.. ++..+++.+...|+|||.+++-..... ....+. +..++.+.=-++.++.+.-. ...+--.|-
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~t-v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 192 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAET-VLEMLQEHLTEVERVECRGG-SPNEDCLLA 192 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHH-HHHHHHHHSEEEEEEEEE-S-STTSEEEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHH-HHHHHHHHhhheeEEEEcCC-CCCCceEee
Confidence 999875 466788999999999993333222110 011333 33333554455555554433 333445667
Q ss_pred EecCCc
Q 046623 203 ELIPPM 208 (218)
Q Consensus 203 ~~~~~~ 208 (218)
+|.+|+
T Consensus 193 ~~~~~~ 198 (201)
T PF05401_consen 193 RFRNPV 198 (201)
T ss_dssp EEE--S
T ss_pred eecCCc
Confidence 777774
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.8e-11 Score=93.01 Aligned_cols=142 Identities=15% Similarity=0.133 Sum_probs=95.5
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCC--------------CC
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGL--------------GG 102 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~--------------~~ 102 (218)
-...|.+++......++.+|||+|||.|..++.++..|. +|+++|+++ +++.+.. ++++ ..
T Consensus 22 p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~ 97 (218)
T PRK13255 22 VNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAG 97 (218)
T ss_pred CCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccC
Confidence 445566666542234567999999999999999999887 899999999 9987642 2222 24
Q ss_pred ceEEEEeecCCCCccccccCCCCcEEEEcccccC--CcchHHHHHHHHHHhcCCCceEEEEEee--cc------CChHHH
Q 046623 103 RVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYD--PEEMVGLGKTLKRVCGTGRHTVVWAVSE--VR------TRTGDC 172 (218)
Q Consensus 103 ~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~--~~~~~~~l~~~~~lL~~gG~~~i~~~~~--~~------~~~~~~ 172 (218)
++++..+|+.+.... ..+.||.|+-..++.+ .+....+++.+.++|+|||..++++... .. ....+.
T Consensus 98 ~v~~~~~D~~~l~~~---~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~e 174 (218)
T PRK13255 98 EITIYCGDFFALTAA---DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEE 174 (218)
T ss_pred ceEEEECcccCCCcc---cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHH
Confidence 578888888765431 2357999997665544 3557889999999999999544432211 11 123445
Q ss_pred HHHHHHhCCcEEEEE
Q 046623 173 LHELIMSQGFRVIEL 187 (218)
Q Consensus 173 ~~~~~~~~gf~~~~~ 187 (218)
+..++ ..+|.+..+
T Consensus 175 l~~~~-~~~~~i~~~ 188 (218)
T PRK13255 175 VEALY-AGCFEIELL 188 (218)
T ss_pred HHHHh-cCCceEEEe
Confidence 55552 344777766
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-11 Score=97.37 Aligned_cols=122 Identities=13% Similarity=0.003 Sum_probs=85.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
...+|||+|||+|.+++.+++. +..+++++|+++ +++.++++. .++.++..|+.... ...+||+|++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~-----~~~kFDlIIs 132 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFE-----SNEKFDVVIS 132 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhc-----ccCCCcEEEE
Confidence 4569999999999999888654 345999999999 999988764 24778888876543 3468999999
Q ss_pred cccccCCcc--------------------hHHHHHHHHHHhcCCCceEEEEEee-c--cCChHHHHHHHHHhCCcEEE
Q 046623 131 SDVFYDPEE--------------------MVGLGKTLKRVCGTGRHTVVWAVSE-V--RTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 131 ~~~~~~~~~--------------------~~~~l~~~~~lL~~gG~~~i~~~~~-~--~~~~~~~~~~~~~~~gf~~~ 185 (218)
++|+++... ..+++.....+|+|+|...+..... . ..........++++.||...
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEec
Confidence 999976311 2567777788999999333332221 1 12233444445599999864
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.2e-11 Score=104.24 Aligned_cols=150 Identities=16% Similarity=0.073 Sum_probs=103.6
Q ss_pred ccccc-ccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCce
Q 046623 29 PLTGA-WLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRV 104 (218)
Q Consensus 29 ~~~g~-~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~ 104 (218)
+..|. .+++.+..+...+.. ..++.+|||+|||+|..+..+++. +..+|+++|+++ +++.+++|++..++. ++
T Consensus 227 ~~~G~~~vqd~~s~l~~~~l~--~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v 303 (445)
T PRK14904 227 LKLGLVSVQNPTQALACLLLN--PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-II 303 (445)
T ss_pred HhCcEEEEeCHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eE
Confidence 33343 456655444444433 246789999999999999888653 235899999999 999999999998875 48
Q ss_pred EEEEeecCCCCccccccCCCCcEEEEcccccCCc----------------------chHHHHHHHHHHhcCCCceEEEEE
Q 046623 105 EVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPE----------------------EMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 105 ~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~----------------------~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
+++..|..... +..+||.|++..|+.... ....++..+.++|+|||.+++.++
T Consensus 304 ~~~~~Da~~~~-----~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 304 ETIEGDARSFS-----PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred EEEeCcccccc-----cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 88888775432 346799999976653211 124689999999999995555555
Q ss_pred eeccCChHHHHHHHHHhC-CcEEEE
Q 046623 163 SEVRTRTGDCLHELIMSQ-GFRVIE 186 (218)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~-gf~~~~ 186 (218)
+.....-+..+..+++.+ +|....
T Consensus 379 s~~~~Ene~~v~~~l~~~~~~~~~~ 403 (445)
T PRK14904 379 SIEPEENELQIEAFLQRHPEFSAEP 403 (445)
T ss_pred CCChhhHHHHHHHHHHhCCCCEEec
Confidence 554444455566665554 466543
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.3e-11 Score=103.83 Aligned_cols=149 Identities=16% Similarity=0.079 Sum_probs=102.2
Q ss_pred HHHHHHHHhcCC-CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc
Q 046623 39 ALILAQFISTHF-DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL 116 (218)
Q Consensus 39 ~~~l~~~l~~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 116 (218)
...+...+.+.. ..++.+|||+|||+|.+++.+++.. .+|+++|+++ +++.+++|+..+++. +++++.+|+.+...
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~ 354 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHH
Confidence 334444444322 2355799999999999999998764 4899999999 999999999999875 58999988754321
Q ss_pred cccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE-EccCCCCC
Q 046623 117 SQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL-TCQLGGGC 195 (218)
Q Consensus 117 ~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~-~~~~~~~~ 195 (218)
.......+||+|++++|-. .....+++.+.+ ++|++ +++++.. .......+..+ .+.||.+..+ ++.+.|..
T Consensus 355 ~~~~~~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~--ivyvsc~-p~tlard~~~l-~~~gy~~~~~~~~DmFP~T 427 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPER--IVYVSCN-PATLARDLEFL-CKEGYGITWVQPVDMFPHT 427 (431)
T ss_pred HHHhcCCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCE--EEEEcCC-HHHHHHHHHHH-HHCCeeEEEEEEeccCCCC
Confidence 1101235799999977732 334667776664 77877 4444433 13344455555 7789999888 77776654
Q ss_pred C
Q 046623 196 P 196 (218)
Q Consensus 196 ~ 196 (218)
.
T Consensus 428 ~ 428 (431)
T TIGR00479 428 A 428 (431)
T ss_pred C
Confidence 3
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-10 Score=93.58 Aligned_cols=149 Identities=15% Similarity=0.084 Sum_probs=97.1
Q ss_pred ccccchhHH-HHHHHHhc----CCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCc
Q 046623 32 GAWLWDSAL-ILAQFIST----HFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGR 103 (218)
Q Consensus 32 g~~~w~~~~-~l~~~l~~----~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~ 103 (218)
.|.+|+--. .|+..+.. .+..++.+|||+|||+|.++..++.. + ...|+++|+++ +.+.+....+.. .+
T Consensus 106 eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~N 182 (293)
T PTZ00146 106 EYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PN 182 (293)
T ss_pred eeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CC
Confidence 488998543 56655544 33357789999999999999999865 3 24899999998 776655554332 34
Q ss_pred eEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEee---ccCChHHH----HHHH
Q 046623 104 VEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE---VRTRTGDC----LHEL 176 (218)
Q Consensus 104 ~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~---~~~~~~~~----~~~~ 176 (218)
+.++..|....... ....+++|+|+++.. .......++.++.+.|||+|.+++.+-.. .....++. +.++
T Consensus 183 I~~I~~Da~~p~~y-~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L 259 (293)
T PTZ00146 183 IVPIIEDARYPQKY-RMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKL 259 (293)
T ss_pred CEEEECCccChhhh-hcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHH
Confidence 77787776532110 112357999998543 33445566778999999999655532111 11222332 4555
Q ss_pred HHhCCcEEEEE
Q 046623 177 IMSQGFRVIEL 187 (218)
Q Consensus 177 ~~~~gf~~~~~ 187 (218)
++.+|...++
T Consensus 260 -~~~GF~~~e~ 269 (293)
T PTZ00146 260 -KKEGLKPKEQ 269 (293)
T ss_pred -HHcCCceEEE
Confidence 8899998776
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-11 Score=104.65 Aligned_cols=131 Identities=11% Similarity=0.096 Sum_probs=96.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..++.. +..+|+++|+++ .++.+++|++..++.+ +.+...|...... ...++||.|
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~l~~---~~~~~fD~V 311 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAERLTE---YVQDTFDRI 311 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhhhhh---hhhccCCEE
Confidence 46789999999999999988754 245999999999 9999999999988753 7888888654321 024679999
Q ss_pred EEcccccCCc----------------------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHh-CCcEEE
Q 046623 129 IMSDVFYDPE----------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMS-QGFRVI 185 (218)
Q Consensus 129 v~~~~~~~~~----------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~-~gf~~~ 185 (218)
+++.|+.... ...+++..+.++|+|||.++..+++......++.+..++.. .+|...
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~ 391 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEVI 391 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcEEe
Confidence 9988874321 23667889999999999655555554445555666666443 356544
Q ss_pred E
Q 046623 186 E 186 (218)
Q Consensus 186 ~ 186 (218)
.
T Consensus 392 ~ 392 (431)
T PRK14903 392 D 392 (431)
T ss_pred c
Confidence 3
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-11 Score=97.22 Aligned_cols=89 Identities=18% Similarity=0.134 Sum_probs=73.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
++.+|||+|||+|..+..+++....+|+++|+|+ +++.+++. ..++.+|....+. +.++||+|+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~----~d~sfD~v~~~ 117 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPF----RDKSFDVVMSS 117 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCC----CCCCEEEEEec
Confidence 3679999999999999998876334999999999 99988753 1245667665544 67899999999
Q ss_pred ccccCCcchHHHHHHHHHHhcCC
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTG 154 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~g 154 (218)
..+++..+.++.++++.++|||.
T Consensus 118 ~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 118 FALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred ChhhccCCHHHHHHHHHHHhcCc
Confidence 99999899999999999999994
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-11 Score=95.76 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=80.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc--ccCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL--SELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~D 126 (218)
.++++|||+|||+|..++.+++. +..+++++|+++ +++.|++|++.+++.++++++.+|..+...... .+.++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 45779999999999988887643 346999999999 999999999999998889999988865422110 1246899
Q ss_pred EEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
+|++... ...+..+++.+.++|+|||
T Consensus 147 ~VfiDa~---k~~y~~~~~~~~~ll~~GG 172 (234)
T PLN02781 147 FAFVDAD---KPNYVHFHEQLLKLVKVGG 172 (234)
T ss_pred EEEECCC---HHHHHHHHHHHHHhcCCCe
Confidence 9998533 2456788999999999999
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.4e-11 Score=97.21 Aligned_cols=126 Identities=16% Similarity=0.169 Sum_probs=86.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCC----CCceEEEEeecCCCCccccccCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGL----GGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
.++.+|||+|||+|.+++.+++.+. +|+++|+++ +++.++++.+.... ...+.+...|+.. ..++||
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-------l~~~fD 214 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-------LSGKYD 214 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-------cCCCcC
Confidence 4678999999999999999998765 899999999 99999999876421 1236777766532 246799
Q ss_pred EEEEcccccCCcc--hHHHHHHHHHHhcCCCceEEEEEeec-----------------------cCChHHHHHHHHHhCC
Q 046623 127 MVIMSDVFYDPEE--MVGLGKTLKRVCGTGRHTVVWAVSEV-----------------------RTRTGDCLHELIMSQG 181 (218)
Q Consensus 127 ~Iv~~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~~~~~~-----------------------~~~~~~~~~~~~~~~g 181 (218)
+|++.++++|..+ ...+++.+.+ +.++| +++...+. +....+.+..++++.|
T Consensus 215 ~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~--liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AG 291 (315)
T PLN02585 215 TVTCLDVLIHYPQDKADGMIAHLAS-LAEKR--LIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAG 291 (315)
T ss_pred EEEEcCEEEecCHHHHHHHHHHHHh-hcCCE--EEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCC
Confidence 9999988866433 3456666664 35555 33332110 0012455666668888
Q ss_pred cEEEEEE
Q 046623 182 FRVIELT 188 (218)
Q Consensus 182 f~~~~~~ 188 (218)
|.+....
T Consensus 292 f~v~~~~ 298 (315)
T PLN02585 292 WKVARRE 298 (315)
T ss_pred CEEEEEE
Confidence 8887653
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.8e-12 Score=110.90 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=80.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|..+..+++ .+..+++++|+++ +++.++++....+ .++.++.+|..+.. ...+.++||+|+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp--~~fedeSFDvVV 492 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLS--SSFEKESVDTIV 492 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCc--cccCCCCEEEEE
Confidence 4678999999999999888765 4456999999999 9999998876655 34777877766532 111457899999
Q ss_pred EcccccCC-------------cchHHHHHHHHHHhcCCCceEE
Q 046623 130 MSDVFYDP-------------EEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 130 ~~~~~~~~-------------~~~~~~l~~~~~lL~~gG~~~i 159 (218)
++.++++. .+..++++.+.+.|||||.+++
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 98877642 3568899999999999995444
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-11 Score=104.31 Aligned_cols=99 Identities=19% Similarity=0.160 Sum_probs=78.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..++.+|||+|||+|.++..+++....+|+++|+|+ +++.++++.+ +. .+++...|+.. ..++||.|+
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~-------l~~~fD~Iv 233 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRD-------LNGQFDRIV 233 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhh-------cCCCCCEEE
Confidence 357789999999999999998865445999999999 9999998874 22 26676666543 236799999
Q ss_pred EcccccCC--cchHHHHHHHHHHhcCCCceEEE
Q 046623 130 MSDVFYDP--EEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 130 ~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+..++++. .....+++.+.++|+|||.+++.
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 98888775 34678999999999999955544
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.8e-11 Score=93.36 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=68.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|..+..+++. +..+++++|+|+ +++.++++. ..+.+..+|+.+ .. +.++||+|+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~-~~----~~~sfD~V~ 110 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD-PF----KDNFFDLVL 110 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC-CC----CCCCEEEEE
Confidence 35678999999999999998765 456999999999 999998764 236677777665 22 567899999
Q ss_pred EcccccCCc--chHHHHHHHHHHh
Q 046623 130 MSDVFYDPE--EMVGLGKTLKRVC 151 (218)
Q Consensus 130 ~~~~~~~~~--~~~~~l~~~~~lL 151 (218)
++.++++.. ...++++++.+++
T Consensus 111 ~~~vL~hl~p~~~~~~l~el~r~~ 134 (204)
T TIGR03587 111 TKGVLIHINPDNLPTAYRELYRCS 134 (204)
T ss_pred ECChhhhCCHHHHHHHHHHHHhhc
Confidence 999998753 3566666666665
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-12 Score=94.35 Aligned_cols=155 Identities=22% Similarity=0.247 Sum_probs=113.6
Q ss_pred ccccccchhHHHHHHHHhcCCC-CCCCeEEEECCC-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCC--Cc
Q 046623 30 LTGAWLWDSALILAQFISTHFD-FQNKSVLELGAG-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLG--GR 103 (218)
Q Consensus 30 ~~g~~~w~~~~~l~~~l~~~~~-~~~~~vLDlG~G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~--~~ 103 (218)
+....+|++...|+.++...++ ..+.+|||+|.| +|.-++.+| +.+...|..+|-+. +++..++..-.|... .+
T Consensus 5 tgnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~ts 84 (201)
T KOG3201|consen 5 TGNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTS 84 (201)
T ss_pred CCcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccce
Confidence 3456799999999999988554 678899999999 777777776 45567899999999 998888777666322 22
Q ss_pred eEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcE
Q 046623 104 VEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFR 183 (218)
Q Consensus 104 ~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~ 183 (218)
+.+...++..... ......||+|++.++++..+-.+.+++.+..+|+|.|.. ++.++........+...+ ...||.
T Consensus 85 c~vlrw~~~~aqs--q~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~A-l~fsPRRg~sL~kF~de~-~~~gf~ 160 (201)
T KOG3201|consen 85 CCVLRWLIWGAQS--QQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRA-LLFSPRRGQSLQKFLDEV-GTVGFT 160 (201)
T ss_pred ehhhHHHHhhhHH--HHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccce-eEecCcccchHHHHHHHH-HhceeE
Confidence 3333333322211 124568999999999988788899999999999999953 333444445677777777 889988
Q ss_pred EEEEE
Q 046623 184 VIELT 188 (218)
Q Consensus 184 ~~~~~ 188 (218)
+...+
T Consensus 161 v~l~e 165 (201)
T KOG3201|consen 161 VCLEE 165 (201)
T ss_pred EEecc
Confidence 87664
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=93.92 Aligned_cols=109 Identities=24% Similarity=0.204 Sum_probs=83.9
Q ss_pred HHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccc
Q 046623 42 LAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLS 120 (218)
Q Consensus 42 l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (218)
.+.++......++.+|||||||+|..+-.+++... +|+.+|..+ ..+.|++|++..+..+ +.++.+|-...-.
T Consensus 61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~---- 134 (209)
T COG2518 61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWP---- 134 (209)
T ss_pred HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCC----
Confidence 33333333346789999999999999999998855 999999999 9999999999999876 9999988665543
Q ss_pred cCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 121 ELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
...+||.|+..... ..+-+.+.+.|++||++++-+.
T Consensus 135 ~~aPyD~I~Vtaaa------~~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 135 EEAPYDRIIVTAAA------PEVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCcCEEEEeecc------CCCCHHHHHhcccCCEEEEEEc
Confidence 56899999985442 2233446778899996666554
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-11 Score=93.96 Aligned_cols=157 Identities=18% Similarity=0.147 Sum_probs=112.2
Q ss_pred ccccccccchhHHHHHHHHhcCCCCC-CCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCce
Q 046623 28 RPLTGAWLWDSALILAQFISTHFDFQ-NKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRV 104 (218)
Q Consensus 28 ~~~~g~~~w~~~~~l~~~l~~~~~~~-~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~ 104 (218)
...+-.|++||....... .. +.+++|||+|.|.+++.+| ..+..+++.+|... -+...+....+.++++ +
T Consensus 47 ~e~~~rHilDSl~~~~~~------~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v 119 (215)
T COG0357 47 EELWQRHILDSLVLLPYL------DGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN-V 119 (215)
T ss_pred HHHHHHHHHHHhhhhhcc------cccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC-e
Confidence 344455556654433322 12 6799999999999999987 44556899999999 8888888888888764 8
Q ss_pred EEEEeecCCCCccccccCCC-CcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcE
Q 046623 105 EVRELVWGSDDLSQLSELGE-FDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFR 183 (218)
Q Consensus 105 ~~~~~d~~~~~~~~~~~~~~-~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~ 183 (218)
+++....++... ... ||+|++..+ +.+..+.+.+..++++||.++++.....+....+.-... ...++.
T Consensus 120 ~i~~~RaE~~~~-----~~~~~D~vtsRAv----a~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~-~~~~~~ 189 (215)
T COG0357 120 EIVHGRAEEFGQ-----EKKQYDVVTSRAV----ASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAI-LPLGGQ 189 (215)
T ss_pred EEehhhHhhccc-----ccccCcEEEeehc----cchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHH-HhhcCc
Confidence 888877665542 223 999999766 778999999999999999666565555555555554554 788888
Q ss_pred EEEEEccCCCCCCCceeE
Q 046623 184 VIELTCQLGGGCPEAFAV 201 (218)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l 201 (218)
+..+.....+.....+.+
T Consensus 190 ~~~~~~~~~p~~~~~r~l 207 (215)
T COG0357 190 VEKVFSLTVPELDGERHL 207 (215)
T ss_pred EEEEEEeecCCCCCceEE
Confidence 888865555544433333
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.2e-11 Score=100.56 Aligned_cols=120 Identities=13% Similarity=0.038 Sum_probs=89.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..+..+||||||+|..++.+|+. +...++|+|+++ ++..+.+++..+++.+ +.++.+|..... ...+.+++|.|+
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll--~~~~~~s~D~I~ 197 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLL--ELLPSNSVEKIF 197 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhh--hhCCCCceeEEE
Confidence 34568999999999999999865 446899999999 9999999998888764 899988875432 112568899999
Q ss_pred EcccccCCcc------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHH
Q 046623 130 MSDVFYDPEE------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHEL 176 (218)
Q Consensus 130 ~~~~~~~~~~------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~ 176 (218)
++.|..+... ...+++.+.++|+||| .+.+.+....+....+..+
T Consensus 198 lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG--~l~l~TD~~~y~~~~~e~~ 248 (390)
T PRK14121 198 VHFPVPWDKKPHRRVISEDFLNEALRVLKPGG--TLELRTDSELYFEFSLELF 248 (390)
T ss_pred EeCCCCccccchhhccHHHHHHHHHHHcCCCc--EEEEEEECHHHHHHHHHHH
Confidence 8765433222 2689999999999999 4555555445554444554
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.8e-12 Score=95.06 Aligned_cols=102 Identities=18% Similarity=0.079 Sum_probs=82.6
Q ss_pred CeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceE-EEEeecCCCCccccccCCCCcEEEEcc
Q 046623 55 KSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVE-VRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
..+||+|||+|.--.+.-..+..+|+++|.++ +.+.+.+.++++.-.+ +. |+.++.++...- +++++|.|++.-
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~l~~l---~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGENLPQL---ADGSYDTVVCTL 153 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhcCccc---ccCCeeeEEEEE
Confidence 46899999999876666544456999999999 9999999988875443 55 888887776521 678999999988
Q ss_pred cccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 133 VFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 133 ~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
++=+..++.+.+.++.++|+|||+++++
T Consensus 154 vLCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 154 VLCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 8878899999999999999999955554
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.7e-12 Score=97.52 Aligned_cols=161 Identities=18% Similarity=0.147 Sum_probs=106.5
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL 116 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 116 (218)
....|.+.|.....-+-.++||+|||||..+..+-.. +.+++++|+|. +++.+...- +-+.. ...+.....
T Consensus 110 vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg----~YD~L--~~Aea~~Fl- 181 (287)
T COG4976 110 VPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKG----LYDTL--YVAEAVLFL- 181 (287)
T ss_pred cHHHHHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhcc----chHHH--HHHHHHHHh-
Confidence 3445555555422222468999999999999999655 45899999999 998875442 11111 111111111
Q ss_pred cccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEee------------ccCChHHHHHHHHHhCCcEE
Q 046623 117 SQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE------------VRTRTGDCLHELIMSQGFRV 184 (218)
Q Consensus 117 ~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~------------~~~~~~~~~~~~~~~~gf~~ 184 (218)
.....++||+|++.+++-+...++.++-.+..+|+|||.+.+-+.+- .+...+..+...+...||.+
T Consensus 182 -~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~ 260 (287)
T COG4976 182 -EDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEV 260 (287)
T ss_pred -hhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceE
Confidence 00145789999999999999999999999999999999322221111 11124555666668999999
Q ss_pred EEE---EccCCCCCCCceeEEEecCC
Q 046623 185 IEL---TCQLGGGCPEAFAVYELIPP 207 (218)
Q Consensus 185 ~~~---~~~~~~~~~~~~~l~~~~~~ 207 (218)
+.+ +++.+.++|.--.++..++|
T Consensus 261 i~~~~ttiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 261 IAIEDTTIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred EEeecccchhhcCCCCCCceEEEecC
Confidence 887 67777777776666665543
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.7e-11 Score=94.19 Aligned_cols=130 Identities=20% Similarity=0.191 Sum_probs=95.5
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCC
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
....+|.+|||-|+|+|.++..+++. +..+|+..|..+ .++.|++|++..++.+++.+...|+....... .....+
T Consensus 36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~-~~~~~~ 114 (247)
T PF08704_consen 36 LDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE-ELESDF 114 (247)
T ss_dssp TT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST-T-TTSE
T ss_pred cCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc-cccCcc
Confidence 33468999999999999999999754 336999999999 99999999999999888999999986433211 023679
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHh-cCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVC-GTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL-~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
|.|++. .+++...+..+.+.| ++||.+.+++ +--.++......+ ++.||..+++
T Consensus 115 DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fs--P~ieQv~~~~~~L-~~~gf~~i~~ 169 (247)
T PF08704_consen 115 DAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFS--PCIEQVQKTVEAL-REHGFTDIET 169 (247)
T ss_dssp EEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEE--SSHHHHHHHHHHH-HHTTEEEEEE
T ss_pred cEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEEC--CCHHHHHHHHHHH-HHCCCeeeEE
Confidence 999983 356778899999999 8999444443 3335677777777 8899987664
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.5e-11 Score=99.65 Aligned_cols=156 Identities=15% Similarity=0.059 Sum_probs=107.7
Q ss_pred HHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc
Q 046623 39 ALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS 117 (218)
Q Consensus 39 ~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (218)
...|.+++.......+.++||++||+|.+++.+++. +.+|+++|.++ +++.+++|++.+++. +++++.+|..+....
T Consensus 192 ~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~ 269 (362)
T PRK05031 192 NEKMLEWALDATKGSKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQA 269 (362)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHH
Confidence 344555544421122357999999999999988776 45999999999 999999999999885 589999887553211
Q ss_pred ccc------------cCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEE
Q 046623 118 QLS------------ELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 118 ~~~------------~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~ 185 (218)
... ...+||+|++++|- .....++++.+.+ +++ +++++... ......+..+ .+ ||.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~~~~l~~l~~---~~~--ivyvSC~p-~tlarDl~~L-~~-gY~l~ 339 (362)
T PRK05031 270 MNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLDDETLKLVQA---YER--ILYISCNP-ETLCENLETL-SQ-THKVE 339 (362)
T ss_pred HhhcccccccccccccCCCCCEEEECCCC--CCCcHHHHHHHHc---cCC--EEEEEeCH-HHHHHHHHHH-cC-CcEEE
Confidence 000 01258999997773 3445666666654 555 45544332 3444556666 44 99999
Q ss_pred EE-EccCCCCCCCceeEEEecC
Q 046623 186 EL-TCQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 186 ~~-~~~~~~~~~~~~~l~~~~~ 206 (218)
++ |+.+.|.......+..+.+
T Consensus 340 ~v~~~DmFPqT~HvE~v~lL~r 361 (362)
T PRK05031 340 RFALFDQFPYTHHMECGVLLEK 361 (362)
T ss_pred EEEEcccCCCCCcEEEEEEEEe
Confidence 98 8999998888888776653
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-11 Score=97.70 Aligned_cols=99 Identities=16% Similarity=0.204 Sum_probs=74.8
Q ss_pred CCCeEEEECCCCCH----HHHHHHHhC------CCeEEEecCcc-hHHHHHHHHH----HhC------------------
Q 046623 53 QNKSVLELGAGAGL----PGLTAARLG------ATRVVLTDVKP-LLPGLINNVE----ANG------------------ 99 (218)
Q Consensus 53 ~~~~vLDlG~G~G~----~~~~l~~~~------~~~v~~~D~~~-~~~~a~~~~~----~~~------------------ 99 (218)
++.+|+|+|||+|. +++.+++.. ..+++++|+|+ +++.|++..- ..+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999995 455554432 24899999999 9999987531 001
Q ss_pred ----CCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCc--chHHHHHHHHHHhcCCC
Q 046623 100 ----LGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPE--EMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 100 ----~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~--~~~~~l~~~~~lL~~gG 155 (218)
+..++.|...|+.+... +.++||+|++.+++++.. ....+++.+.++|+|||
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~----~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG 236 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP----PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGG 236 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC----ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCe
Confidence 12358888888876543 467899999999987753 55689999999999999
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.28 E-value=8e-11 Score=91.41 Aligned_cols=132 Identities=16% Similarity=0.077 Sum_probs=90.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
++.+|||+|||+|.++..++......++++|+++ +++.++++ .++++.+|+...... ...++||+|+++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~--~~~~sfD~Vi~~ 82 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEA--FPDKSFDYVILS 82 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccc--cCCCCcCEEEEh
Confidence 4679999999999999888755445789999999 88776532 256777777542110 145789999999
Q ss_pred ccccCCcchHHHHHHHHHHhcCCCceEEEEEe------------------------------eccCChHHHHHHHHHhCC
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVS------------------------------EVRTRTGDCLHELIMSQG 181 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~------------------------------~~~~~~~~~~~~~~~~~g 181 (218)
.++++..+...+++++.+.++++ ++.... ..+....+.+..++++.|
T Consensus 83 ~~l~~~~d~~~~l~e~~r~~~~~---ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~G 159 (194)
T TIGR02081 83 QTLQATRNPEEILDEMLRVGRHA---IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELN 159 (194)
T ss_pred hHhHcCcCHHHHHHHHHHhCCeE---EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCC
Confidence 99999989999988888776542 111000 001223445556669999
Q ss_pred cEEEEEEccCCCCCCC
Q 046623 182 FRVIELTCQLGGGCPE 197 (218)
Q Consensus 182 f~~~~~~~~~~~~~~~ 197 (218)
|.+.+.......+.+.
T Consensus 160 f~v~~~~~~~~~~~~~ 175 (194)
T TIGR02081 160 LRILDRAAFDVDGRGG 175 (194)
T ss_pred CEEEEEEEeccccccc
Confidence 9998886555544433
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-11 Score=98.53 Aligned_cols=102 Identities=23% Similarity=0.287 Sum_probs=83.5
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
..+++++.|||+|||+|.++.+++..|+++|.++|.+++.+.|++..+.|++.+++.++.+.+++.. ..++.|+|
T Consensus 173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdie-----LPEk~Dvi 247 (517)
T KOG1500|consen 173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIE-----LPEKVDVI 247 (517)
T ss_pred ccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCcccccc-----CchhccEE
Confidence 3458899999999999999999999999999999999999999999999999999999999887765 35789999
Q ss_pred EEccc---ccCCcchHHHHHHHHHHhcCCCc
Q 046623 129 IMSDV---FYDPEEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 129 v~~~~---~~~~~~~~~~l~~~~~lL~~gG~ 156 (218)
++-++ +++.-.++..+. +++.|+|+|.
T Consensus 248 ISEPMG~mL~NERMLEsYl~-Ark~l~P~Gk 277 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLH-ARKWLKPNGK 277 (517)
T ss_pred EeccchhhhhhHHHHHHHHH-HHhhcCCCCc
Confidence 98443 233333444443 4589999993
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-10 Score=89.09 Aligned_cols=142 Identities=16% Similarity=0.123 Sum_probs=102.4
Q ss_pred hhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEE-eecC
Q 046623 37 DSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRE-LVWG 112 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~-~d~~ 112 (218)
+...+|...+.. .+.++|||||++.|..++.++.. + ..+++.+|.++ ..+.|++|+++.++.+++..+. +|..
T Consensus 46 e~g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal 122 (219)
T COG4122 46 ETGALLRLLARL---SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL 122 (219)
T ss_pred hHHHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH
Confidence 445555555544 46789999999999999998643 3 35899999999 9999999999999998888887 4554
Q ss_pred CCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccC-----C-----------hHHHHHHH
Q 046623 113 SDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRT-----R-----------TGDCLHEL 176 (218)
Q Consensus 113 ~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~-----~-----------~~~~~~~~ 176 (218)
+.... ...++||+|++.. ....+.++++.+.++|+||| ++++.+.... . ...+...+
T Consensus 123 ~~l~~--~~~~~fDliFIDa---dK~~yp~~le~~~~lLr~GG--liv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~ 195 (219)
T COG4122 123 DVLSR--LLDGSFDLVFIDA---DKADYPEYLERALPLLRPGG--LIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYL 195 (219)
T ss_pred HHHHh--ccCCCccEEEEeC---ChhhCHHHHHHHHHHhCCCc--EEEEeecccCCccCCccchhHHHHHHHHHHHHHHH
Confidence 43221 1458999999842 24678999999999999999 5554333221 1 34455555
Q ss_pred HHhCCcEEEEEE
Q 046623 177 IMSQGFRVIELT 188 (218)
Q Consensus 177 ~~~~gf~~~~~~ 188 (218)
....++...-+|
T Consensus 196 ~~~~~~~t~~lP 207 (219)
T COG4122 196 LEDPRYDTVLLP 207 (219)
T ss_pred hhCcCceeEEEe
Confidence 455667666666
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-10 Score=97.43 Aligned_cols=155 Identities=14% Similarity=0.053 Sum_probs=106.1
Q ss_pred HHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc
Q 046623 40 LILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ 118 (218)
Q Consensus 40 ~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (218)
..|.+++.+.....+.+|||+|||+|.+++.+++.. .+|+++|+++ +++.+++|++.+++. ++.++.+|+.+.....
T Consensus 184 ~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~ 261 (353)
T TIGR02143 184 IKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAM 261 (353)
T ss_pred HHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHH
Confidence 344444444222223479999999999999888764 5999999999 999999999999885 4889988876532110
Q ss_pred cc-------c-----CCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEE
Q 046623 119 LS-------E-----LGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIE 186 (218)
Q Consensus 119 ~~-------~-----~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~ 186 (218)
.. . ...+|+|++++| .......+++.+.+ |++ +++++... ......+..+ . .+|.+.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~~---~~~--ivYvsC~p-~tlaRDl~~L-~-~~Y~l~~ 331 (353)
T TIGR02143 262 NGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQA---YER--ILYISCNP-ETLKANLEQL-S-ETHRVER 331 (353)
T ss_pred hhccccccccccccccCCCCEEEECCC--CCCCcHHHHHHHHc---CCc--EEEEEcCH-HHHHHHHHHH-h-cCcEEEE
Confidence 00 0 124899999777 33455666666654 665 55554332 3344555555 3 4599988
Q ss_pred E-EccCCCCCCCceeEEEecC
Q 046623 187 L-TCQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 187 ~-~~~~~~~~~~~~~l~~~~~ 206 (218)
+ |+.+.|.......+..+.+
T Consensus 332 v~~~DmFP~T~HvE~v~lL~r 352 (353)
T TIGR02143 332 FALFDQFPYTHHMECGVLLER 352 (353)
T ss_pred EEEcccCCCCCcEEEEEEEEe
Confidence 8 8999998888887776653
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-11 Score=95.47 Aligned_cols=92 Identities=15% Similarity=0.070 Sum_probs=71.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHh----CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL----GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~----~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.+.+|||+|||+|.+++.+++. +..+++++|+++ +++.+++|.. .+.++..|+.... ...+||+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~-----~~~~FDl 117 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTE-----FDTLFDM 117 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccc-----ccCCccE
Confidence 4679999999999999998754 235899999999 9999998752 3778888876433 2458999
Q ss_pred EEEcccccCCc------------chHHHHHHHHHHhcCCC
Q 046623 128 VIMSDVFYDPE------------EMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 128 Iv~~~~~~~~~------------~~~~~l~~~~~lL~~gG 155 (218)
|++|+|++... ....+++.+.+++++|+
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~ 157 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT 157 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE
Confidence 99999997421 14558888888777766
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.9e-11 Score=103.43 Aligned_cols=102 Identities=23% Similarity=0.212 Sum_probs=78.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..+++.+ .+++++|+++ +++.++.. ++...++.++..|+...... .+.++||+|++
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~--~~~~~fD~I~~ 109 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLN--ISDGSVDLIFS 109 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccC--CCCCCEEEEeh
Confidence 456799999999999999998875 4999999999 88776542 22224588888887543211 14578999999
Q ss_pred cccccCCcc--hHHHHHHHHHHhcCCCceEE
Q 046623 131 SDVFYDPEE--MVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 131 ~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i 159 (218)
+.++++..+ ..++++.+.++|+|||.+++
T Consensus 110 ~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 110 NWLLMYLSDKEVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred hhhHHhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 999887654 67899999999999994443
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.8e-11 Score=80.33 Aligned_cols=98 Identities=23% Similarity=0.203 Sum_probs=77.7
Q ss_pred eEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccc
Q 046623 56 SVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVF 134 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~ 134 (218)
+++|+|||.|..+..+++....+++++|.++ +...+++...... ...+.+...|+.+... ....++|+|+++.++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPP---EADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhcc---ccCCceEEEEEccce
Confidence 5899999999999888775557999999999 8888875443333 2457888877765532 134689999999998
Q ss_pred cC-CcchHHHHHHHHHHhcCCCce
Q 046623 135 YD-PEEMVGLGKTLKRVCGTGRHT 157 (218)
Q Consensus 135 ~~-~~~~~~~l~~~~~lL~~gG~~ 157 (218)
++ ......+++.+.+.++++|.+
T Consensus 77 ~~~~~~~~~~l~~~~~~l~~~g~~ 100 (107)
T cd02440 77 HHLVEDLARFLEEARRLLKPGGVL 100 (107)
T ss_pred eehhhHHHHHHHHHHHHcCCCCEE
Confidence 88 788999999999999999933
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-10 Score=95.29 Aligned_cols=123 Identities=20% Similarity=0.185 Sum_probs=97.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
..|.+|+|..||.|.+++.+|+.+...|+++|+|| +++.+++|++.|++.+.+..+.+|...... ....+|.|++
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~----~~~~aDrIim 262 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP----ELGVADRIIM 262 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh----ccccCCEEEe
Confidence 45889999999999999999999887799999999 999999999999999889999999876654 2378999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCC---hHHHHHHHHHhCCc
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTR---TGDCLHELIMSQGF 182 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~---~~~~~~~~~~~~gf 182 (218)
+.+ .....++..+.++++++|.+.++...+.... ....+.....+.+.
T Consensus 263 ~~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~ 313 (341)
T COG2520 263 GLP----KSAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGY 313 (341)
T ss_pred CCC----CcchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccC
Confidence 877 3457899999999999995555544443332 33444444344544
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=4e-10 Score=91.46 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=96.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc--ccCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL--SELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~D 126 (218)
.+.++|||+|+++|..++.++.. + ..+++++|.++ ..+.|++|++..|+.++++++.+|..+...... ...++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 35679999999999999998754 2 34799999999 999999999999998889999988765432110 0136899
Q ss_pred EEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccC--------------ChHHHHHHHHHhCCcEEEEEEcc
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRT--------------RTGDCLHELIMSQGFRVIELTCQ 190 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~--------------~~~~~~~~~~~~~gf~~~~~~~~ 190 (218)
+|++... ...+..+++.+.++|+||| ++++..-... ...++.+.+..+..|....+|+.
T Consensus 197 ~VFIDa~---K~~Y~~y~e~~l~lL~~GG--vIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPig 269 (278)
T PLN02476 197 FAFVDAD---KRMYQDYFELLLQLVRVGG--VIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPIG 269 (278)
T ss_pred EEEECCC---HHHHHHHHHHHHHhcCCCc--EEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEeC
Confidence 9999543 3567889999999999999 4332222110 13455555545566666666643
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.5e-10 Score=96.74 Aligned_cols=148 Identities=20% Similarity=0.130 Sum_probs=105.2
Q ss_pred hHHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC
Q 046623 38 SALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD 115 (218)
Q Consensus 38 ~~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 115 (218)
....|..++.. ....++.++||+.||.|.+++.+|+. ..+|+++|+++ +++.|++|++.|++.+ ++|+.++.++..
T Consensus 277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~ 354 (432)
T COG2265 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFT 354 (432)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHh
Confidence 34455555554 23356789999999999999999976 45999999999 9999999999999987 999998877665
Q ss_pred ccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE-EccCCCC
Q 046623 116 LSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL-TCQLGGG 194 (218)
Q Consensus 116 ~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~-~~~~~~~ 194 (218)
.... ....+|.|+.++|= ......+++.+.+. +|.. +++++... .+....+..+ .+.|+.+.++ ++.+.|.
T Consensus 355 ~~~~-~~~~~d~VvvDPPR--~G~~~~~lk~l~~~-~p~~--IvYVSCNP-~TlaRDl~~L-~~~gy~i~~v~~~DmFP~ 426 (432)
T COG2265 355 PAWW-EGYKPDVVVVDPPR--AGADREVLKQLAKL-KPKR--IVYVSCNP-ATLARDLAIL-ASTGYEIERVQPFDMFPH 426 (432)
T ss_pred hhcc-ccCCCCEEEECCCC--CCCCHHHHHHHHhc-CCCc--EEEEeCCH-HHHHHHHHHH-HhCCeEEEEEEEeccCCC
Confidence 4211 23578999997662 23445777777744 4443 55544332 3445556666 7889988888 6665554
Q ss_pred C
Q 046623 195 C 195 (218)
Q Consensus 195 ~ 195 (218)
.
T Consensus 427 T 427 (432)
T COG2265 427 T 427 (432)
T ss_pred c
Confidence 3
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-10 Score=92.70 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=68.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC----CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 53 QNKSVLELGAGAGLPGLTAARLG----ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~----~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
+..+|||+|||+|..+..+++.. ...++++|+|+ +++.|+++. .++.+..+|..+.+. +.++||+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~----~~~sfD~ 154 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPF----ADQSLDA 154 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCC----cCCceeE
Confidence 45689999999999998886542 13799999999 999887653 347788888776543 5678999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|++... ...++++.++|+|||.++++
T Consensus 155 I~~~~~-------~~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 155 IIRIYA-------PCKAEELARVVKPGGIVITV 180 (272)
T ss_pred EEEecC-------CCCHHHHHhhccCCCEEEEE
Confidence 997432 23457889999999955444
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-09 Score=82.74 Aligned_cols=120 Identities=19% Similarity=0.158 Sum_probs=78.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc----ccccCCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS----QLSELGE 124 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~ 124 (218)
.++.+|||+|||+|.++..+++. +..+++++|+++ . .. .++.++..|+.+.... ...+.++
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 57889999999999999988654 335799999998 5 11 2367788887653210 0113567
Q ss_pred CcEEEEcccccC-----C------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 125 FDMVIMSDVFYD-----P------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 125 ~D~Iv~~~~~~~-----~------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
||+|+++.+.+. . .....++..+.++|+|||.+++.. .......+.+..+ +. .|....+
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~--~~~~~~~~~l~~l-~~-~~~~~~~ 168 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV--FQGEEIDEYLNEL-RK-LFEKVKV 168 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE--ccCccHHHHHHHH-Hh-hhceEEE
Confidence 999998643210 1 123678999999999999544433 2234455666665 33 4644444
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.3e-10 Score=92.89 Aligned_cols=142 Identities=23% Similarity=0.190 Sum_probs=106.7
Q ss_pred hhHHHHHHHHhcCCC-CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEe-ecCC
Q 046623 37 DSALILAQFISTHFD-FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVREL-VWGS 113 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~-d~~~ 113 (218)
.-...+++.+.+... .+|..|||-.||||.+.+.+...|+ +++|+|++. ++.-++.|++..++++ ..+... |..+
T Consensus 180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~ 257 (347)
T COG1041 180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATN 257 (347)
T ss_pred CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCc-eeEEEeccccc
Confidence 344678888888433 6788999999999999999999987 999999999 9999999999998765 444444 7776
Q ss_pred CCccccccCCCCcEEEEcccccCC---------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEE
Q 046623 114 DDLSQLSELGEFDMVIMSDVFYDP---------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRV 184 (218)
Q Consensus 114 ~~~~~~~~~~~~D~Iv~~~~~~~~---------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~ 184 (218)
.+. +..++|.|++.+|+.-. ....++++.+...|++||.++++.. .....++ .+.+|.+
T Consensus 258 lpl----~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p-------~~~~~~~-~~~~f~v 325 (347)
T COG1041 258 LPL----RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP-------RDPRHEL-EELGFKV 325 (347)
T ss_pred CCC----CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC-------CcchhhH-hhcCceE
Confidence 664 45579999997776532 2367888999999999993333332 1223444 6889998
Q ss_pred EEE-EccCC
Q 046623 185 IEL-TCQLG 192 (218)
Q Consensus 185 ~~~-~~~~~ 192 (218)
... +.+.+
T Consensus 326 ~~~~~~~~H 334 (347)
T COG1041 326 LGRFTMRVH 334 (347)
T ss_pred EEEEEEeec
Confidence 776 54433
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-10 Score=93.45 Aligned_cols=102 Identities=17% Similarity=0.136 Sum_probs=76.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
++++|||||||+|.++..+++. +..+++++|+++ .++.+++++...+..++++++.+|..+.... ..++||+|++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~---~~~~yD~I~~ 142 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV---HRHSTDVILV 142 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh---CCCCCCEEEE
Confidence 4679999999999999988654 456899999999 9999999987655446788888876543211 2358999998
Q ss_pred cccccCCc-----chHHHHHHHHHHhcCCCceE
Q 046623 131 SDVFYDPE-----EMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 131 ~~~~~~~~-----~~~~~l~~~~~lL~~gG~~~ 158 (218)
+ .+.... ....+++.+.++|+|||.++
T Consensus 143 D-~~~~~~~~~~l~t~efl~~~~~~L~pgGvlv 174 (262)
T PRK04457 143 D-GFDGEGIIDALCTQPFFDDCRNALSSDGIFV 174 (262)
T ss_pred e-CCCCCCCccccCcHHHHHHHHHhcCCCcEEE
Confidence 4 332211 23799999999999999433
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-10 Score=91.68 Aligned_cols=93 Identities=23% Similarity=0.241 Sum_probs=69.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh----CC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL----GA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~----~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
.++.+|||+|||+|.++..+++. |. .+++++|+++ +++.++++....+ +.+...+...... ..++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~----~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVA----EGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccc----cCCCc
Confidence 45679999999999988887642 32 4899999999 9999988765443 4444444333322 45689
Q ss_pred cEEEEcccccCCcc--hHHHHHHHHHHhc
Q 046623 126 DMVIMSDVFYDPEE--MVGLGKTLKRVCG 152 (218)
Q Consensus 126 D~Iv~~~~~~~~~~--~~~~l~~~~~lL~ 152 (218)
|+|+++.++++..+ ...+++++.++++
T Consensus 131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 131 DVVTSNHFLHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred cEEEECCeeecCChHHHHHHHHHHHHhcC
Confidence 99999999998765 4578999998887
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-10 Score=90.88 Aligned_cols=110 Identities=25% Similarity=0.251 Sum_probs=77.2
Q ss_pred HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-CC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc
Q 046623 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-GA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS 117 (218)
Q Consensus 41 ~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (218)
.++..+......++.+|||||||+|..+..++.. +. .+|+++|.++ ..+.|++++...+.. ++.++.+|......
T Consensus 60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~- 137 (209)
T PF01135_consen 60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWP- 137 (209)
T ss_dssp HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTG-
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccc-
Confidence 4444444444568899999999999999988755 43 3699999999 999999999998875 48999888654433
Q ss_pred ccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 118 QLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 118 ~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
...+||.|++..... .+-..+.+.|++||++++.+
T Consensus 138 ---~~apfD~I~v~~a~~------~ip~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 138 ---EEAPFDRIIVTAAVP------EIPEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp ---GG-SEEEEEESSBBS------S--HHHHHTEEEEEEEEEEE
T ss_pred ---cCCCcCEEEEeeccc------hHHHHHHHhcCCCcEEEEEE
Confidence 557899999965542 33445677899999555443
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.9e-10 Score=92.29 Aligned_cols=108 Identities=19% Similarity=0.122 Sum_probs=77.8
Q ss_pred HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc
Q 046623 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS 117 (218)
Q Consensus 41 ~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (218)
.++.++......++.+|||+|||+|..+..+++... .+|+++|+++ +++.++++++.++.. ++.++.+|......
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~- 145 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVP- 145 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhccc-
Confidence 334444433335678999999999999999876532 3799999999 999999999988874 47888877654332
Q ss_pred ccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEE
Q 046623 118 QLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 118 ~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i 159 (218)
...+||+|++.... ..+...+.+.|+|||.+++
T Consensus 146 ---~~~~fD~Ii~~~g~------~~ip~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 146 ---EFAPYDVIFVTVGV------DEVPETWFTQLKEGGRVIV 178 (322)
T ss_pred ---ccCCccEEEECCch------HHhHHHHHHhcCCCCEEEE
Confidence 33579999985332 2334556789999995444
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-09 Score=85.99 Aligned_cols=159 Identities=31% Similarity=0.457 Sum_probs=110.5
Q ss_pred ccccccccchhHHHHHHHHhcC-C------CCC-----CCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHH
Q 046623 28 RPLTGAWLWDSALILAQFISTH-F------DFQ-----NKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNV 95 (218)
Q Consensus 28 ~~~~g~~~w~~~~~l~~~l~~~-~------~~~-----~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~ 95 (218)
........|+....++.++... . ... ..+|||+|+|+|..++.++......|+..|....+...+.|.
T Consensus 49 ~~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~ 128 (248)
T KOG2793|consen 49 EQGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNR 128 (248)
T ss_pred ccceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhh
Confidence 3445667899888888887551 1 122 345999999999999999886666999999877554444443
Q ss_pred HH-----hCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChH
Q 046623 96 EA-----NGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTG 170 (218)
Q Consensus 96 ~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~ 170 (218)
.. ++....+.+..++|.............+|+|++++++|+....+.++..++.+|..++ .++..+..|....
T Consensus 129 ~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~--~i~l~~~lr~~~~ 206 (248)
T KOG2793|consen 129 DKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDG--TIFLAYPLRRDAA 206 (248)
T ss_pred hhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCC--eEEEEEecccchH
Confidence 33 3333468888899987765443333339999999999999999999999999999998 5555556555322
Q ss_pred HHHHHHHHhCCcEEEEEE
Q 046623 171 DCLHELIMSQGFRVIELT 188 (218)
Q Consensus 171 ~~~~~~~~~~gf~~~~~~ 188 (218)
......+.+..+...+++
T Consensus 207 ~~~~~~~~~~~~~~~~v~ 224 (248)
T KOG2793|consen 207 WEIEVLLFKKDLKIFDVV 224 (248)
T ss_pred HHHHHHHhhhhhccceee
Confidence 333333355555555553
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-10 Score=87.76 Aligned_cols=98 Identities=20% Similarity=0.168 Sum_probs=75.8
Q ss_pred HHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc
Q 046623 40 LILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ 118 (218)
Q Consensus 40 ~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (218)
..+++|+. ++.+|||+|||.|.+...+......+..|+|+++ .+..+.++ | +.++++|+.....
T Consensus 5 ~~I~~~I~-----pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~-- 69 (193)
T PF07021_consen 5 QIIAEWIE-----PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLA-- 69 (193)
T ss_pred HHHHHHcC-----CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHh--
Confidence 34555544 5789999999999999988754445899999998 66655433 2 7789988876532
Q ss_pred cccCCCCcEEEEcccccCCcchHHHHHHHHHHhc
Q 046623 119 LSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCG 152 (218)
Q Consensus 119 ~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~ 152 (218)
..++++||+|+++..+.....++.+++++.|.-+
T Consensus 70 ~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 70 DFPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred hCCCCCccEEehHhHHHhHhHHHHHHHHHHHhcC
Confidence 2378999999999999988889999888876644
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.6e-10 Score=89.06 Aligned_cols=145 Identities=19% Similarity=0.174 Sum_probs=100.4
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
.+.+|..++.. .+.++||||||++|..++.+++. + ..+++.+|.++ ..+.|+++++..+..++++++.+|..+.
T Consensus 33 ~g~lL~~l~~~---~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~ 109 (205)
T PF01596_consen 33 TGQLLQMLVRL---TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEV 109 (205)
T ss_dssp HHHHHHHHHHH---HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHH
T ss_pred HHHHHHHHHHh---cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhh
Confidence 33444444433 45679999999999999999864 2 35999999999 9999999999999888899999887543
Q ss_pred Ccccc--ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccC--------------ChHHHHHHHHH
Q 046623 115 DLSQL--SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRT--------------RTGDCLHELIM 178 (218)
Q Consensus 115 ~~~~~--~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~--------------~~~~~~~~~~~ 178 (218)
..... ...++||+|++... ...+..+++.+.++|++|| ++++.+.... ...++.+.+..
T Consensus 110 l~~l~~~~~~~~fD~VFiDa~---K~~y~~y~~~~~~ll~~gg--vii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~ 184 (205)
T PF01596_consen 110 LPELANDGEEGQFDFVFIDAD---KRNYLEYFEKALPLLRPGG--VIIADNVLWRGSVADPDDEDPKTVAIREFNEYIAN 184 (205)
T ss_dssp HHHHHHTTTTTSEEEEEEEST---GGGHHHHHHHHHHHEEEEE--EEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCceeEEEEccc---ccchhhHHHHHhhhccCCe--EEEEccccccceecCccchhhhHHHHHHHHHHHHh
Confidence 22111 11358999999543 3667889999999999999 5554433211 13456666645
Q ss_pred hCCcEEEEEEcc
Q 046623 179 SQGFRVIELTCQ 190 (218)
Q Consensus 179 ~~gf~~~~~~~~ 190 (218)
...|...-+|+.
T Consensus 185 d~~~~~~llpig 196 (205)
T PF01596_consen 185 DPRFETVLLPIG 196 (205)
T ss_dssp -TTEEEEEECST
T ss_pred CCCeeEEEEEeC
Confidence 566666655543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-10 Score=89.94 Aligned_cols=95 Identities=27% Similarity=0.245 Sum_probs=72.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|+|+.||.|.+++.+++. .++.|+++|++| +++.+++|++.|++.+++....+|..... +...+|.|+
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~-----~~~~~drvi 174 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL-----PEGKFDRVI 174 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--------TT-EEEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc-----CccccCEEE
Confidence 46889999999999999999873 345899999999 99999999999999988999998876553 367899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCC
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
++.| .....++..+.+++++||
T Consensus 175 m~lp----~~~~~fl~~~~~~~~~~g 196 (200)
T PF02475_consen 175 MNLP----ESSLEFLDAALSLLKEGG 196 (200)
T ss_dssp E--T----SSGGGGHHHHHHHEEEEE
T ss_pred ECCh----HHHHHHHHHHHHHhcCCc
Confidence 9877 334578889999999988
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-10 Score=84.24 Aligned_cols=91 Identities=20% Similarity=0.237 Sum_probs=76.8
Q ss_pred HHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc
Q 046623 40 LILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS 117 (218)
Q Consensus 40 ~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (218)
..+...+.+ +.+.+|+.++|+|||.|.++..++..+...|.|+|+++ +++...+|++...++ +++..+|+.+...
T Consensus 34 asM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~- 110 (185)
T KOG3420|consen 34 ASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLEL- 110 (185)
T ss_pred HHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhc-
Confidence 334444544 56689999999999999999888888888999999999 999999999988765 6889999887765
Q ss_pred ccccCCCCcEEEEcccccC
Q 046623 118 QLSELGEFDMVIMSDVFYD 136 (218)
Q Consensus 118 ~~~~~~~~D~Iv~~~~~~~ 136 (218)
..+.||.++.|+||..
T Consensus 111 ---~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 111 ---KGGIFDTAVINPPFGT 126 (185)
T ss_pred ---cCCeEeeEEecCCCCc
Confidence 5588999999999964
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-09 Score=84.05 Aligned_cols=148 Identities=13% Similarity=0.093 Sum_probs=100.5
Q ss_pred hhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHH-------h----CCCCce
Q 046623 37 DSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEA-------N----GLGGRV 104 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~-------~----~~~~~~ 104 (218)
.....|.++.......++.+||..|||.|.....++..|. +|+++|+|+ +++.+.+.... . .-...+
T Consensus 27 ~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i 105 (226)
T PRK13256 27 SPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDI 105 (226)
T ss_pred CCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCce
Confidence 4455676776653334568999999999999999999988 799999999 99887552100 0 001358
Q ss_pred EEEEeecCCCCccccccCCCCcEEEEcccccC--CcchHHHHHHHHHHhcCCCceEEEEEeecc-------CChHHHHHH
Q 046623 105 EVRELVWGSDDLSQLSELGEFDMVIMSDVFYD--PEEMVGLGKTLKRVCGTGRHTVVWAVSEVR-------TRTGDCLHE 175 (218)
Q Consensus 105 ~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~--~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~-------~~~~~~~~~ 175 (218)
++..+|+.+..... ...++||.|+=...+.. .+...++.+.+.++|+|||.++++...... ....+.+..
T Consensus 106 ~~~~gD~f~l~~~~-~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~ 184 (226)
T PRK13256 106 EIYVADIFNLPKIA-NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIK 184 (226)
T ss_pred EEEEccCcCCCccc-cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHH
Confidence 99999988764210 12368999885554433 467889999999999999966666543221 114455666
Q ss_pred HHHhCCcEEEEE
Q 046623 176 LIMSQGFRVIEL 187 (218)
Q Consensus 176 ~~~~~gf~~~~~ 187 (218)
+ -...|.+..+
T Consensus 185 l-f~~~~~i~~l 195 (226)
T PRK13256 185 N-FSAKIKFELI 195 (226)
T ss_pred h-ccCCceEEEe
Confidence 5 3455666655
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.8e-10 Score=84.00 Aligned_cols=87 Identities=21% Similarity=0.112 Sum_probs=67.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..+++.+ .+++++|+++ +++.+++++... .+++++.+|+.+... +...+|.|++
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~----~~~~~d~vi~ 83 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDL----PKLQPYKVVG 83 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCc----cccCCCEEEE
Confidence 456799999999999999998774 5999999999 999999887542 458899998877653 3346999999
Q ss_pred cccccCCcchHHHHHHHHH
Q 046623 131 SDVFYDPEEMVGLGKTLKR 149 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~ 149 (218)
+.|++. ..+++..+.+
T Consensus 84 n~Py~~---~~~~i~~~l~ 99 (169)
T smart00650 84 NLPYNI---STPILFKLLE 99 (169)
T ss_pred CCCccc---HHHHHHHHHh
Confidence 887753 2344444443
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-09 Score=83.98 Aligned_cols=151 Identities=17% Similarity=0.153 Sum_probs=101.9
Q ss_pred CCCccccccccccchhHHHHHHHHhc---CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh
Q 046623 23 DSVTGRPLTGAWLWDSALILAQFIST---HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN 98 (218)
Q Consensus 23 ~~~~~~~~~g~~~w~~~~~l~~~l~~---~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~ 98 (218)
|.....|....++-.-...+++.... .+..++.-|||||||+|..+..+...|. ..+++|+|+ +++.|.+.--+
T Consensus 17 d~eA~kYt~nsri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e- 94 (270)
T KOG1541|consen 17 DTEAPKYTQNSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE- 94 (270)
T ss_pred hhhhhhccccceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh-
Confidence 34444555555555544445444333 2333567899999999999999988875 899999999 99998863211
Q ss_pred CCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC-----------cchHHHHHHHHHHhcCCCceEEEEEeeccC
Q 046623 99 GLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP-----------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRT 167 (218)
Q Consensus 99 ~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~-----------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~ 167 (218)
-+++.+|+....+ +..++||-+++...+.+. ..+..|+..+..+|++|++.++-.+.+...
T Consensus 95 -----gdlil~DMG~Glp---frpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~ 166 (270)
T KOG1541|consen 95 -----GDLILCDMGEGLP---FRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEA 166 (270)
T ss_pred -----cCeeeeecCCCCC---CCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchH
Confidence 3678888875543 256899988864433211 224567888999999999777666655555
Q ss_pred ChHHHHHHHHHhCCcEE
Q 046623 168 RTGDCLHELIMSQGFRV 184 (218)
Q Consensus 168 ~~~~~~~~~~~~~gf~~ 184 (218)
..+...... ...||.=
T Consensus 167 q~d~i~~~a-~~aGF~G 182 (270)
T KOG1541|consen 167 QIDMIMQQA-MKAGFGG 182 (270)
T ss_pred HHHHHHHHH-HhhccCC
Confidence 565666666 6778774
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.8e-10 Score=90.44 Aligned_cols=104 Identities=16% Similarity=0.080 Sum_probs=76.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhC--C--CCceEEEEeecCCCCccccccCCCCc
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANG--L--GGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~--~--~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
++++||++|||.|..+..+.+. +..+|+++|+++ +++.+++.+...+ . .++++++.+|....... ..++||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---TENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---CCCccc
Confidence 5679999999999999998776 557999999999 9999999886532 1 35688888876543211 356899
Q ss_pred EEEEcc--cccCCc--chHHHHHHHHHHhcCCCceEE
Q 046623 127 MVIMSD--VFYDPE--EMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 127 ~Iv~~~--~~~~~~--~~~~~l~~~~~lL~~gG~~~i 159 (218)
+|++.. +..... -..++++.+.+.|+|||.+++
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 999853 221111 136788999999999994443
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=92.12 Aligned_cols=158 Identities=16% Similarity=0.136 Sum_probs=96.8
Q ss_pred hhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC
Q 046623 37 DSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD 115 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 115 (218)
.....|..++.......+.++||+.||.|.+++.+|... .+|+|+|.++ +++.|+.|++.|++.+ ++|+.++.++..
T Consensus 180 ~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~ 257 (352)
T PF05958_consen 180 EQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDN-VEFIRGDAEDFA 257 (352)
T ss_dssp HHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--S-EEEEE--SHHCC
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCc-ceEEEeeccchh
Confidence 445556666555222223389999999999999998875 4999999999 9999999999999864 899877654321
Q ss_pred cc-----cc-------ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcE
Q 046623 116 LS-----QL-------SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFR 183 (218)
Q Consensus 116 ~~-----~~-------~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~ 183 (218)
.. .+ .....+|+|++.||=. ...+.+++.+.+ +. .+++++... ......+..+ . .|+.
T Consensus 258 ~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~--G~~~~~~~~~~~---~~--~ivYvSCnP-~tlaRDl~~L-~-~~y~ 327 (352)
T PF05958_consen 258 KALAKAREFNRLKGIDLKSFKFDAVILDPPRA--GLDEKVIELIKK---LK--RIVYVSCNP-ATLARDLKIL-K-EGYK 327 (352)
T ss_dssp CHHCCS-GGTTGGGS-GGCTTESEEEE---TT---SCHHHHHHHHH---SS--EEEEEES-H-HHHHHHHHHH-H-CCEE
T ss_pred HHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCC--CchHHHHHHHhc---CC--eEEEEECCH-HHHHHHHHHH-h-hcCE
Confidence 10 00 0123689999966632 333455555543 32 355555443 3344556666 4 4999
Q ss_pred EEEE-EccCCCCCCCceeEEEecC
Q 046623 184 VIEL-TCQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 184 ~~~~-~~~~~~~~~~~~~l~~~~~ 206 (218)
+..+ |+.+.|.......+..+.+
T Consensus 328 ~~~v~~~DmFP~T~HvE~v~lL~r 351 (352)
T PF05958_consen 328 LEKVQPVDMFPQTHHVETVALLER 351 (352)
T ss_dssp EEEEEEE-SSTTSS--EEEEEEEE
T ss_pred EEEEEEeecCCCCCcEEEEEEEEe
Confidence 9988 8999988888777766654
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=83.70 Aligned_cols=136 Identities=22% Similarity=0.254 Sum_probs=88.5
Q ss_pred HHHHHHHhcCCC-CCCCeEEEECCCCCHHHHHHHHhCC-Ce---------EEEecCcc-hHHHHHHHHHHhCCCCceEEE
Q 046623 40 LILAQFISTHFD-FQNKSVLELGAGAGLPGLTAARLGA-TR---------VVLTDVKP-LLPGLINNVEANGLGGRVEVR 107 (218)
Q Consensus 40 ~~l~~~l~~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~-~~---------v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~ 107 (218)
..++..|..... .++..+||..||+|++.++++..+. .. +++.|+++ +++.++.|++..++...+.+.
T Consensus 14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~ 93 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFI 93 (179)
T ss_dssp HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEE
T ss_pred HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEE
Confidence 446666655222 4678999999999999999865433 23 78999999 999999999999988888999
Q ss_pred EeecCCCCccccccCCCCcEEEEcccccCC--------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHh
Q 046623 108 ELVWGSDDLSQLSELGEFDMVIMSDVFYDP--------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMS 179 (218)
Q Consensus 108 ~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~--------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~ 179 (218)
..|...... ..+++|.|++++|+... ..+..+++.+.+.+++ . .++++... .. +...+..
T Consensus 94 ~~D~~~l~~----~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~-~v~l~~~~--~~----~~~~~~~ 161 (179)
T PF01170_consen 94 QWDARELPL----PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-R-AVFLTTSN--RE----LEKALGL 161 (179)
T ss_dssp E--GGGGGG----TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-C-EEEEEESC--CC----HHHHHTS
T ss_pred ecchhhccc----ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-C-EEEEEECC--HH----HHHHhcc
Confidence 888776653 56789999999998753 2245566777777777 3 34444322 22 2333355
Q ss_pred CCcEEEEE
Q 046623 180 QGFRVIEL 187 (218)
Q Consensus 180 ~gf~~~~~ 187 (218)
.++...+.
T Consensus 162 ~~~~~~~~ 169 (179)
T PF01170_consen 162 KGWRKRKL 169 (179)
T ss_dssp TTSEEEEE
T ss_pred hhhceEEE
Confidence 56665554
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.9e-10 Score=94.12 Aligned_cols=128 Identities=13% Similarity=0.086 Sum_probs=87.5
Q ss_pred cchhHHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhC---------CCCc
Q 046623 35 LWDSALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANG---------LGGR 103 (218)
Q Consensus 35 ~w~~~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~---------~~~~ 103 (218)
.|=-+..+..++.. ....++.+|||||||-|....-....+..+++++|++. .++.|+.+.+... ..-.
T Consensus 43 NwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~ 122 (331)
T PF03291_consen 43 NWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFI 122 (331)
T ss_dssp HHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCE
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccch
Confidence 46677777777664 22237789999999999988888777888999999999 9999998883211 1123
Q ss_pred eEEEEeecCCCCccccccC--CCCcEEEEcccccCC----cchHHHHHHHHHHhcCCCceEEEEEee
Q 046623 104 VEVRELVWGSDDLSQLSEL--GEFDMVIMSDVFYDP----EEMVGLGKTLKRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 104 ~~~~~~d~~~~~~~~~~~~--~~~D~Iv~~~~~~~~----~~~~~~l~~~~~lL~~gG~~~i~~~~~ 164 (218)
..++.+|............ .+||+|-+-..+|+. +....++..+.++|+||| .++.+++
T Consensus 123 a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG--~FIgT~~ 187 (331)
T PF03291_consen 123 AEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGG--YFIGTTP 187 (331)
T ss_dssp EEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEE--EEEEEEE
T ss_pred hheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCC--EEEEEec
Confidence 5677777665544333333 489999998877753 456779999999999999 4444433
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4e-10 Score=88.06 Aligned_cols=102 Identities=16% Similarity=0.108 Sum_probs=72.5
Q ss_pred eEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccc
Q 046623 56 SVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVF 134 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~ 134 (218)
.++|+|||+|..++.++.. ..+|+++|+++ +++.+++.....-.........-+..+ .....+++|+|++..++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~----L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVD----LLGGEESVDLITAAQAV 110 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCcccccccccc----ccCCCcceeeehhhhhH
Confidence 8999999999777777877 45999999999 999887664332211101111111111 11246899999998888
Q ss_pred cCCcchHHHHHHHHHHhcCCC-ceEEEEEe
Q 046623 135 YDPEEMVGLGKTLKRVCGTGR-HTVVWAVS 163 (218)
Q Consensus 135 ~~~~~~~~~l~~~~~lL~~gG-~~~i~~~~ 163 (218)
|. .+.+.+.+.+.++|+++| ..++|.+.
T Consensus 111 HW-Fdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 111 HW-FDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred Hh-hchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 75 889999999999999877 66677665
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.7e-10 Score=97.15 Aligned_cols=98 Identities=27% Similarity=0.323 Sum_probs=76.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC-----CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLG-----ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~-----~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
++..|+|+|||+|.++..+++++ +.+|+++|.|+ +...+++.+..++..++|+++.+|+++... ..++|
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-----pekvD 260 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-----PEKVD 260 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-----SS-EE
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-----CCcee
Confidence 36789999999999998876554 46999999999 888887777889998899999999887763 45899
Q ss_pred EEEEc--ccccCCcchHHHHHHHHHHhcCCC
Q 046623 127 MVIMS--DVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 127 ~Iv~~--~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
+||+- ..+...+...+.+....+.|||+|
T Consensus 261 IIVSElLGsfg~nEl~pE~Lda~~rfLkp~G 291 (448)
T PF05185_consen 261 IIVSELLGSFGDNELSPECLDAADRFLKPDG 291 (448)
T ss_dssp EEEE---BTTBTTTSHHHHHHHGGGGEEEEE
T ss_pred EEEEeccCCccccccCHHHHHHHHhhcCCCC
Confidence 99971 233344667788999999999999
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.6e-10 Score=88.52 Aligned_cols=146 Identities=21% Similarity=0.268 Sum_probs=98.7
Q ss_pred hhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHH-HHHHhCC----------CCce
Q 046623 37 DSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLIN-NVEANGL----------GGRV 104 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~-~~~~~~~----------~~~~ 104 (218)
.....|.+++......++.+||..|||.|.....++..|. +|+|+|+++ +++.+.+ +...... ..++
T Consensus 21 ~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i 99 (218)
T PF05724_consen 21 EPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRI 99 (218)
T ss_dssp TSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSE
T ss_pred CCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCce
Confidence 3467788887764445667999999999999999999987 999999999 9988733 2211110 1347
Q ss_pred EEEEeecCCCCccccccCCCCcEEEEcccc--cCCcchHHHHHHHHHHhcCCCceEEEEEeec-c-------CChHHHHH
Q 046623 105 EVRELVWGSDDLSQLSELGEFDMVIMSDVF--YDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV-R-------TRTGDCLH 174 (218)
Q Consensus 105 ~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~--~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~-~-------~~~~~~~~ 174 (218)
++..+|+...... ..++||+|+=...+ -..+...+..+.+.++|+|||..++++.... . ....+.+.
T Consensus 100 ~~~~gDfF~l~~~---~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~ 176 (218)
T PF05724_consen 100 TIYCGDFFELPPE---DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVR 176 (218)
T ss_dssp EEEES-TTTGGGS---CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHH
T ss_pred EEEEcccccCChh---hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHH
Confidence 8888898875531 22579999943333 2357889999999999999996333322211 1 12556667
Q ss_pred HHHHhCCcEEEEE
Q 046623 175 ELIMSQGFRVIEL 187 (218)
Q Consensus 175 ~~~~~~gf~~~~~ 187 (218)
.+ -..+|++...
T Consensus 177 ~l-~~~~f~i~~l 188 (218)
T PF05724_consen 177 EL-FGPGFEIEEL 188 (218)
T ss_dssp HH-HTTTEEEEEE
T ss_pred HH-hcCCcEEEEE
Confidence 77 3489998887
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.7e-10 Score=86.06 Aligned_cols=125 Identities=21% Similarity=0.239 Sum_probs=90.8
Q ss_pred eEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEccc
Q 046623 56 SVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDV 133 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~ 133 (218)
+++|+|||.|.+++.++ ..+..+++.+|.+. -+...+......+++ +++++....++ .. ...+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~~----~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-PE----YRESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-TT----TTT-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-cc----cCCCccEEEeehh
Confidence 79999999999999997 44556899999999 888888888888886 48998877766 11 5678999999776
Q ss_pred ccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccC
Q 046623 134 FYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQL 191 (218)
Q Consensus 134 ~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~ 191 (218)
..+..+++.+.+++++||.++++-.........+.-..+ ...+.....++...
T Consensus 125 ----~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~-~~~~~~~~~v~~~~ 177 (184)
T PF02527_consen 125 ----APLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAW-KKLGLKVLSVPEFE 177 (184)
T ss_dssp ----SSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHH-HCCCEEEEEEEEEE
T ss_pred ----cCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHH-HHhCCEEeeecccc
Confidence 678899999999999999444443322222333333333 67777777775443
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-09 Score=88.46 Aligned_cols=106 Identities=16% Similarity=0.081 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC-ccccccCCCCcEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARLG--ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD-LSQLSELGEFDMV 128 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~--~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~D~I 128 (218)
++.+|||+|||+|..+..+++.. ..+|+++|+|+ +++.+++++....-...+.++.+|+.+.. ...........++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 45799999999999999887653 35899999999 99999888765431223667788886532 1000001123345
Q ss_pred EEcccccCC--cchHHHHHHHHHHhcCCCceE
Q 046623 129 IMSDVFYDP--EEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 129 v~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~ 158 (218)
++..++++. ++...+++.+.+.|+|||.++
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~l 174 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLL 174 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 555566653 456789999999999999443
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.6e-09 Score=83.23 Aligned_cols=140 Identities=17% Similarity=0.164 Sum_probs=86.1
Q ss_pred ccchhHHHHHHHHhcCC-CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHH-HHHHHHHhCCCCce-EEEEe
Q 046623 34 WLWDSALILAQFISTHF-DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPG-LINNVEANGLGGRV-EVREL 109 (218)
Q Consensus 34 ~~w~~~~~l~~~l~~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~-a~~~~~~~~~~~~~-~~~~~ 109 (218)
+++.++..|...+.... ..++.+|||+|||+|.++..+++.|+.+|+++|+++ ++.. ++++. ++ .+...
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~-------~v~~~~~~ 127 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE-------RVKVLERT 127 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC-------CeeEeecC
Confidence 55678888888887743 468889999999999999999998888999999999 6654 33331 11 12222
Q ss_pred ecCCCCcccc-ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc-------------------CCh
Q 046623 110 VWGSDDLSQL-SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR-------------------TRT 169 (218)
Q Consensus 110 d~~~~~~~~~-~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~-------------------~~~ 169 (218)
++........ .....+|+++++.. .++..+.++|++ |.+++++-+... ...
T Consensus 128 ni~~~~~~~~~~d~~~~DvsfiS~~--------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~ 198 (228)
T TIGR00478 128 NIRYVTPADIFPDFATFDVSFISLI--------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALAL 198 (228)
T ss_pred CcccCCHhHcCCCceeeeEEEeehH--------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHH
Confidence 2221111111 01235666665332 367888899999 755544322211 013
Q ss_pred HHHHHHHHHhCCcEEEEEEcc
Q 046623 170 GDCLHELIMSQGFRVIELTCQ 190 (218)
Q Consensus 170 ~~~~~~~~~~~gf~~~~~~~~ 190 (218)
......+ .+.||.+..+..+
T Consensus 199 ~~~~~~~-~~~~~~~~~~~~s 218 (228)
T TIGR00478 199 HKVIDKG-ESPDFQEKKIIFS 218 (228)
T ss_pred HHHHHHH-HcCCCeEeeEEEC
Confidence 3334444 6788988877333
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-09 Score=95.58 Aligned_cols=128 Identities=23% Similarity=0.130 Sum_probs=85.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHH--H-h--CC-CCceEEEEeecCCCCccccccCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVE--A-N--GL-GGRVEVRELVWGSDDLSQLSELG 123 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~--~-~--~~-~~~~~~~~~d~~~~~~~~~~~~~ 123 (218)
.++++|||+|||+|..+..+.+.+. .+++++|+++ +++.++++.. . + .. .++++++..|..+... ...+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~---~~~~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR---KLAE 372 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH---hCCC
Confidence 3567999999999999999887765 6999999999 9999998532 1 1 11 2468888877654321 1346
Q ss_pred CCcEEEEcccccCCc-----chHHHHHHHHHHhcCCCceEEEEEeec--cCChHHHHHHHHHhCCcE
Q 046623 124 EFDMVIMSDVFYDPE-----EMVGLGKTLKRVCGTGRHTVVWAVSEV--RTRTGDCLHELIMSQGFR 183 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~~-----~~~~~l~~~~~lL~~gG~~~i~~~~~~--~~~~~~~~~~~~~~~gf~ 183 (218)
+||+|+++.+..... -..++++.+.++|+|||.+++-..... .....+..+.+ ++.||.
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l-~~~gf~ 438 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATL-EAAGLA 438 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHH-HHcCCE
Confidence 899999965432211 134688999999999994333222111 11233444444 888894
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.2e-09 Score=85.39 Aligned_cols=105 Identities=16% Similarity=0.058 Sum_probs=73.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCC---CCceEEEEeecCCCCccccccCCCCcE
Q 046623 53 QNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGL---GGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.+++||++|||+|..+..+.+.+ ..+++++|+++ +++.+++++...+. ..+++++..|...... ...++||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~---~~~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA---DTENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH---hCCCCccE
Confidence 45699999999999998887665 56899999999 99999988755321 2356676655432211 12468999
Q ss_pred EEEcccccC--Ccc--hHHHHHHHHHHhcCCCceEEE
Q 046623 128 VIMSDVFYD--PEE--MVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 128 Iv~~~~~~~--~~~--~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|+++.+... ... ..++++.+.++|+|||.+++.
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 998554221 112 468889999999999944433
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.5e-09 Score=84.90 Aligned_cols=101 Identities=16% Similarity=0.209 Sum_probs=80.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccc---cCCCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLS---ELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~ 125 (218)
.+.++|||||+++|..++.++.. + ..+++.+|.++ ..+.|+++++..|+.++++++.++..+....... ..++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 35679999999999999988754 2 35899999999 9999999999999988999999887554321110 13689
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
|+|++..- ...+..+++.+.++|++||
T Consensus 158 D~iFiDad---K~~Y~~y~~~~l~ll~~GG 184 (247)
T PLN02589 158 DFIFVDAD---KDNYINYHKRLIDLVKVGG 184 (247)
T ss_pred cEEEecCC---HHHhHHHHHHHHHhcCCCe
Confidence 99998433 3557788899999999999
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-09 Score=83.97 Aligned_cols=130 Identities=23% Similarity=0.318 Sum_probs=94.2
Q ss_pred eEEEECCCCCHHHHHHHHhCC---CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 56 SVLELGAGAGLPGLTAARLGA---TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~~~---~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
+|||+|||.|.....+.+... ..+.++|.++ |++..+++...+- .++.....|+...........+++|+|++-
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 799999999988877754322 5899999999 9999998876554 345555566665554334467899999986
Q ss_pred cccc--CCcchHHHHHHHHHHhcCCCceEEEEEee---------------------------ccCChHHHHHHHHHhCCc
Q 046623 132 DVFY--DPEEMVGLGKTLKRVCGTGRHTVVWAVSE---------------------------VRTRTGDCLHELIMSQGF 182 (218)
Q Consensus 132 ~~~~--~~~~~~~~l~~~~~lL~~gG~~~i~~~~~---------------------------~~~~~~~~~~~~~~~~gf 182 (218)
-++. +++.+...++.+.++||||| .+++.... .+....+.+..+|.+.||
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG-~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf 230 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGG-SLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGF 230 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCc-EEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhccc
Confidence 6664 35788999999999999999 33331111 112366778888899999
Q ss_pred EEEEEE
Q 046623 183 RVIELT 188 (218)
Q Consensus 183 ~~~~~~ 188 (218)
.....+
T Consensus 231 ~~~~~~ 236 (264)
T KOG2361|consen 231 EEVQLE 236 (264)
T ss_pred chhccc
Confidence 987763
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.9e-08 Score=78.24 Aligned_cols=122 Identities=23% Similarity=0.313 Sum_probs=87.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEe-ecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVREL-VWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~D~Iv 129 (218)
....++||||+|.|..+..++..- .+|.++|.|+ +..++++ .| .+++.. ||.+ ...+||+|.
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~----kg----~~vl~~~~w~~-------~~~~fDvIs 156 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSK----KG----FTVLDIDDWQQ-------TDFKFDVIS 156 (265)
T ss_pred ccCCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHh----CC----CeEEehhhhhc-------cCCceEEEe
Confidence 356789999999999999997763 4899999999 7655443 33 333321 2221 235799999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccC-------------------------ChHHHHHHHHHhCCcEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRT-------------------------RTGDCLHELIMSQGFRV 184 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~-------------------------~~~~~~~~~~~~~gf~~ 184 (218)
|.+++-..+.+..+++.+.+.|+|+|++++-+.-+.++ .+..++ .++...||++
T Consensus 157 cLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~-~v~~p~GF~v 235 (265)
T PF05219_consen 157 CLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLV-NVFEPAGFEV 235 (265)
T ss_pred ehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHH-HHHHhcCCEE
Confidence 99999888999999999999999999555443322211 144455 5568899999
Q ss_pred EEEEcc
Q 046623 185 IELTCQ 190 (218)
Q Consensus 185 ~~~~~~ 190 (218)
.....-
T Consensus 236 ~~~tr~ 241 (265)
T PF05219_consen 236 ERWTRL 241 (265)
T ss_pred EEEecc
Confidence 887333
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-09 Score=91.35 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=79.8
Q ss_pred CCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 54 NKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
+.+|||+.||+|..++.++.. |+.+|+++|+++ +++.+++|++.|++. ++.+...|....... ...+||+|.+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~---~~~~fDvIdl 120 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRY---RNRKFHVIDI 120 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHH---hCCCCCEEEe
Confidence 358999999999999999876 668999999999 999999999999875 367777665543221 2357999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEee
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~ 164 (218)
||++ ...++++.+.+.++++| ++.++++.
T Consensus 121 -DPfG---s~~~fld~al~~~~~~g-lL~vTaTD 149 (374)
T TIGR00308 121 -DPFG---TPAPFVDSAIQASAERG-LLLVTATD 149 (374)
T ss_pred -CCCC---CcHHHHHHHHHhcccCC-EEEEEecc
Confidence 5553 44689999999999998 55555444
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.9e-09 Score=86.50 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=92.1
Q ss_pred chhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC-----CceEEEEe
Q 046623 36 WDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG-----GRVEVREL 109 (218)
Q Consensus 36 w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~-----~~~~~~~~ 109 (218)
|=.+.++..+.. ++..++|+|||.|...+..-+.|..+++++|+.+ .++.++++.+.-.-. -.+.|+.+
T Consensus 105 wIKs~LI~~y~~-----~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~ 179 (389)
T KOG1975|consen 105 WIKSVLINLYTK-----RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAA 179 (389)
T ss_pred HHHHHHHHHHhc-----cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEe
Confidence 444455544433 5678999999999999988888889999999999 999988776532111 12678888
Q ss_pred ecCCCCccccc--cCCCCcEEEEcccccC----CcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHH
Q 046623 110 VWGSDDLSQLS--ELGEFDMVIMSDVFYD----PEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHEL 176 (218)
Q Consensus 110 d~~~~~~~~~~--~~~~~D~Iv~~~~~~~----~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~ 176 (218)
|.......... ...+||+|-+-.++|+ .+...-++.++.++|+||| +++.+.+. ....+..+
T Consensus 180 Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG--~FIgTiPd---sd~Ii~rl 247 (389)
T KOG1975|consen 180 DCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGG--VFIGTIPD---SDVIIKRL 247 (389)
T ss_pred ccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCc--EEEEecCc---HHHHHHHH
Confidence 88766543322 2334999998777765 3566778999999999999 55555443 33444444
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.5e-09 Score=90.21 Aligned_cols=100 Identities=24% Similarity=0.279 Sum_probs=76.3
Q ss_pred CCeEEEECCCCCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 54 NKSVLELGAGAGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
+.+|||++||+|..++.++. .+..+|+++|+++ +++.+++|++.|++.+ +.+...|...... ..+.||+|+++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~----~~~~fD~V~lD 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLH----EERKFDVVDID 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHh----hcCCCCEEEEC
Confidence 46899999999999999875 4556899999999 9999999999998864 5677766543211 14569999995
Q ss_pred ccccCCcchHHHHHHHHHHhcCCCceEEEEEe
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVS 163 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~ 163 (218)
|+ .....+++.+.+.++++| ++.+.++
T Consensus 133 -P~---Gs~~~~l~~al~~~~~~g-ilyvSAt 159 (382)
T PRK04338 133 -PF---GSPAPFLDSAIRSVKRGG-LLCVTAT 159 (382)
T ss_pred -CC---CCcHHHHHHHHHHhcCCC-EEEEEec
Confidence 44 445788888778889998 3444333
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=79.32 Aligned_cols=126 Identities=19% Similarity=0.160 Sum_probs=90.4
Q ss_pred eEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEccc
Q 046623 56 SVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDV 133 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~ 133 (218)
.+||||||.|.+.+.+|+. +-..++|+|+.. .+..+.+.+...++. ++.++.+|..... ....+.+++|-|.++-|
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l-~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELL-RRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHH-HHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHH-hhcccCCchheEEEeCC
Confidence 8999999999999998754 557999999999 999988888888875 4999998876532 22235688999987644
Q ss_pred ccCC--------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHh--CCcEEEE
Q 046623 134 FYDP--------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMS--QGFRVIE 186 (218)
Q Consensus 134 ~~~~--------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~--~gf~~~~ 186 (218)
=-+. --..++++.+.++|+||| .+.+.+....+.......+ .. .+|....
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG--~l~~~TD~~~y~~~~~~~~-~~~~~~f~~~~ 157 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGG--ELYFATDVEEYAEWMLEQF-EESHPGFENIE 157 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEE--EEEEEES-HHHHHHHHHHH-HHHSTTEEEE-
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCC--EEEEEeCCHHHHHHHHHHH-HhcCcCeEEcc
Confidence 2221 135789999999999999 6666677667777777776 55 4777664
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.3e-09 Score=85.30 Aligned_cols=81 Identities=20% Similarity=0.266 Sum_probs=66.1
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
....++.+|||+|||+|.++..+++.+. +++++|+++ +++.+++++...+...+++++.+|+..... ..+|.
T Consensus 32 ~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~------~~~d~ 104 (294)
T PTZ00338 32 AAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF------PYFDV 104 (294)
T ss_pred cCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc------cccCE
Confidence 3335678999999999999999987754 899999999 999999998876655679999998876432 46899
Q ss_pred EEEcccccC
Q 046623 128 VIMSDVFYD 136 (218)
Q Consensus 128 Iv~~~~~~~ 136 (218)
|++|.|++-
T Consensus 105 VvaNlPY~I 113 (294)
T PTZ00338 105 CVANVPYQI 113 (294)
T ss_pred EEecCCccc
Confidence 999887764
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.7e-08 Score=84.26 Aligned_cols=145 Identities=14% Similarity=0.068 Sum_probs=97.9
Q ss_pred cccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEe
Q 046623 33 AWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVREL 109 (218)
Q Consensus 33 ~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~ 109 (218)
+.+.+.+..+.-.+......++.+|||++||+|.=+.+++.. + ...+++.|+++ -++.+++|+++.|+.+ +.+...
T Consensus 93 ~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~ 171 (470)
T PRK11933 93 FYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHF 171 (470)
T ss_pred EEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeC
Confidence 334554444433333112247789999999999998888654 2 35899999999 9999999999999864 666665
Q ss_pred ecCCCCccccccCCCCcEEEEcccccCCc----------------------chHHHHHHHHHHhcCCCceEEEEEeeccC
Q 046623 110 VWGSDDLSQLSELGEFDMVIMSDVFYDPE----------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRT 167 (218)
Q Consensus 110 d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~----------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~ 167 (218)
|...... .....||.|++..|+.... ...++++.+.++|||||.++.-+++-...
T Consensus 172 D~~~~~~---~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~e 248 (470)
T PRK11933 172 DGRVFGA---ALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNRE 248 (470)
T ss_pred chhhhhh---hchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHH
Confidence 6443211 1235799999988875321 13678899999999999544444444444
Q ss_pred ChHHHHHHHHHhCC
Q 046623 168 RTGDCLHELIMSQG 181 (218)
Q Consensus 168 ~~~~~~~~~~~~~g 181 (218)
.-++.+.++++++.
T Consensus 249 ENE~vV~~~L~~~~ 262 (470)
T PRK11933 249 ENQAVCLWLKETYP 262 (470)
T ss_pred HHHHHHHHHHHHCC
Confidence 55566666656553
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-08 Score=81.64 Aligned_cols=96 Identities=20% Similarity=0.243 Sum_probs=74.5
Q ss_pred CCCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.+..+|+|+|+|.|..+..++ +++..+++..|....++.+++ .++++++.+|+. ... +. +|++++
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~~rv~~~~gd~f-~~~----P~--~D~~~l 164 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------ADRVEFVPGDFF-DPL----PV--ADVYLL 164 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------TTTEEEEES-TT-TCC----SS--ESEEEE
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------ccccccccccHH-hhh----cc--ccceee
Confidence 345689999999999999986 455579999998667777666 377999999998 332 33 999999
Q ss_pred cccccCC--cchHHHHHHHHHHhcCC--CceEEEE
Q 046623 131 SDVFYDP--EEMVGLGKTLKRVCGTG--RHTVVWA 161 (218)
Q Consensus 131 ~~~~~~~--~~~~~~l~~~~~lL~~g--G~~~i~~ 161 (218)
..++|+. ++...+++++++.|+|| |+++|+-
T Consensus 165 ~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 165 RHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp ESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred ehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 9999875 45788999999999998 9666553
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-08 Score=78.23 Aligned_cols=105 Identities=17% Similarity=0.149 Sum_probs=80.2
Q ss_pred eEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc----ccCCCCcEEE
Q 046623 56 SVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL----SELGEFDMVI 129 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~D~Iv 129 (218)
+|||||||||-.+..+++. +.....-.|.++ ....+...+...+.++...-+.+|+......-. ...++||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 6999999999999998754 445666788888 778888888888776655666777766533111 1346899999
Q ss_pred EcccccCC--cchHHHHHHHHHHhcCCCceEEE
Q 046623 130 MSDVFYDP--EEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 130 ~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+.+++|-. ...+.+++.+.++|++||.+++|
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 99998853 56788999999999999955544
|
The function of this family is unknown. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.6e-08 Score=83.40 Aligned_cols=133 Identities=19% Similarity=0.077 Sum_probs=84.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHH-----HhCC-CCceEEEEeecCCCCccccccCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVE-----ANGL-GGRVEVRELVWGSDDLSQLSELG 123 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~-----~~~~-~~~~~~~~~d~~~~~~~~~~~~~ 123 (218)
..+++||++|||.|.....+.+.+ ..+++++|+++ +++.|+.... .... .++++++.+|..+... ...+
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~---~~~~ 225 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS---SPSS 225 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH---hcCC
Confidence 456799999999999888887764 46999999999 9999886311 1111 3578888877664322 1346
Q ss_pred CCcEEEEcccccCC-----cchHHHHHHHHHHhcCCCceEEEEEeeccC-ChHHHHHHHHHhCCcEEEEE
Q 046623 124 EFDMVIMSDVFYDP-----EEMVGLGKTLKRVCGTGRHTVVWAVSEVRT-RTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~-----~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~-~~~~~~~~~~~~~gf~~~~~ 187 (218)
+||+|+++.+-... --..++++.+.+.|+|||.+++........ .....+...+++.++.....
T Consensus 226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y 295 (374)
T PRK01581 226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSY 295 (374)
T ss_pred CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEE
Confidence 89999985321100 112678999999999999433332211110 01011233337777776554
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.7e-09 Score=81.27 Aligned_cols=133 Identities=16% Similarity=0.105 Sum_probs=98.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhC-CCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANG-LGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||-..|-|..++.+.+.|+.+|+.+|.++ .++.|+-|==..+ ....++++.+|..+.-. ...+++||.|+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~--~~~D~sfDaIi 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVK--DFDDESFDAII 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHh--cCCccccceEe
Confidence 36889999999999999999999999999999999 8888765531111 12346788777654321 12567899999
Q ss_pred EcccccCCc---chHHHHHHHHHHhcCCCceEEEEEeecc-----CChHHHHHHHHHhCCcEEEEE
Q 046623 130 MSDVFYDPE---EMVGLGKTLKRVCGTGRHTVVWAVSEVR-----TRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 130 ~~~~~~~~~---~~~~~l~~~~~lL~~gG~~~i~~~~~~~-----~~~~~~~~~~~~~~gf~~~~~ 187 (218)
-.+|-++.+ -.+.+-+++.++|+|||+++-++..+.. +......+.+ ++.||...+.
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RL-r~vGF~~v~~ 275 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERL-RRVGFEVVKK 275 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHH-HhcCceeeee
Confidence 877765432 2477889999999999988888776642 2355555666 8999996554
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.2e-08 Score=81.22 Aligned_cols=103 Identities=15% Similarity=0.039 Sum_probs=74.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhC--C-CCceEEEEeecCCCCccccccCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANG--L-GGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
.++++||++|||.|.....+++.+ ..+++.+|+++ .++.+++.+...+ . .++++++.+|....... .+.++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~--~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN--APEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh--ccCCCCC
Confidence 356799999999999999998775 36899999999 9999999886532 2 35789998885432210 0246799
Q ss_pred EEEEcccccCCc----chHHHHHHHHHHhcCCCc
Q 046623 127 MVIMSDVFYDPE----EMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 127 ~Iv~~~~~~~~~----~~~~~l~~~~~lL~~gG~ 156 (218)
+|++...-.... -...+++.+.++|+|||.
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGv 201 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGV 201 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcE
Confidence 999843211111 135789999999999993
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=82.66 Aligned_cols=76 Identities=21% Similarity=0.131 Sum_probs=61.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..+++.+. +++++|+++ +++.+++++.. .+++++.+|+.+.... .-..|.|++
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~----~~~~~~vv~ 111 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLS----ELQPLKVVA 111 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHH----HcCcceEEE
Confidence 5678999999999999999988866 999999999 99999887643 4589999998876531 111589999
Q ss_pred cccccC
Q 046623 131 SDVFYD 136 (218)
Q Consensus 131 ~~~~~~ 136 (218)
|.|++.
T Consensus 112 NlPY~i 117 (272)
T PRK00274 112 NLPYNI 117 (272)
T ss_pred eCCccc
Confidence 888654
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.8e-08 Score=71.20 Aligned_cols=95 Identities=15% Similarity=0.091 Sum_probs=67.6
Q ss_pred HHHHHhc-CCCCCCCeEEEECCCCCH-HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc
Q 046623 42 LAQFIST-HFDFQNKSVLELGAGAGL-PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ 118 (218)
Q Consensus 42 l~~~l~~-~~~~~~~~vLDlG~G~G~-~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (218)
+++++.. .+..++.++||+|||+|. ++..+++.|. .|+++|+++ +++.++++. ++++..|+.+....
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~--------~~~v~dDlf~p~~~- 73 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLG--------LNAFVDDLFNPNLE- 73 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhC--------CeEEECcCCCCCHH-
Confidence 4555544 233456799999999996 8888888876 999999999 988886652 68888898876642
Q ss_pred cccCCCCcEEEEcccccCCcchHHHHHHHHHHh
Q 046623 119 LSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVC 151 (218)
Q Consensus 119 ~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL 151 (218)
.-..+|+|.+..|. .++...+..+++-+
T Consensus 74 --~y~~a~liysirpp---~el~~~~~~la~~~ 101 (134)
T PRK04148 74 --IYKNAKLIYSIRPP---RDLQPFILELAKKI 101 (134)
T ss_pred --HHhcCCEEEEeCCC---HHHHHHHHHHHHHc
Confidence 23679999986652 34444444444433
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.8e-09 Score=78.53 Aligned_cols=79 Identities=23% Similarity=0.181 Sum_probs=57.6
Q ss_pred CeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEccc
Q 046623 55 KSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDV 133 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~ 133 (218)
..|+|+.||.|.-++.+|+... +|+++|+++ .++.++.|++..|+.++++++.+|+.+...... ....+|+|+++||
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~-~~~~~D~vFlSPP 78 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLK-SNKIFDVVFLSPP 78 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------SEEEE---
T ss_pred CEEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcc-ccccccEEEECCC
Confidence 3799999999999999999854 999999999 999999999999998899999999877543211 1112899999998
Q ss_pred cc
Q 046623 134 FY 135 (218)
Q Consensus 134 ~~ 135 (218)
..
T Consensus 79 WG 80 (163)
T PF09445_consen 79 WG 80 (163)
T ss_dssp BS
T ss_pred CC
Confidence 75
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-08 Score=80.43 Aligned_cols=76 Identities=29% Similarity=0.294 Sum_probs=62.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..++.+|||+|||+|.++..+++.+ .+++++|+++ +++.+++++... .+++++.+|+..... ..+|.|+
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~---~~v~ii~~D~~~~~~------~~~d~Vv 96 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAA---GNVEIIEGDALKVDL------PEFNKVV 96 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccC---CCEEEEEeccccCCc------hhceEEE
Confidence 3567899999999999999998875 4899999999 999998887542 458999998876532 3479999
Q ss_pred EcccccC
Q 046623 130 MSDVFYD 136 (218)
Q Consensus 130 ~~~~~~~ 136 (218)
+|.|++.
T Consensus 97 ~NlPy~i 103 (258)
T PRK14896 97 SNLPYQI 103 (258)
T ss_pred EcCCccc
Confidence 9888764
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.7e-08 Score=73.01 Aligned_cols=121 Identities=18% Similarity=0.093 Sum_probs=90.7
Q ss_pred hhHHHHHHHHhcC-CCCCCCeEEEECCCCCHHHHHHHHhCC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecC
Q 046623 37 DSALILAQFISTH-FDFQNKSVLELGAGAGLPGLTAARLGA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWG 112 (218)
Q Consensus 37 ~~~~~l~~~l~~~-~~~~~~~vLDlG~G~G~~~~~l~~~~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~ 112 (218)
+++..+++.|... ....+..|||+|.|+|.++..+.+.|. ..++++|.++ +...+.+.. +.++++.+|..
T Consensus 31 PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~ 104 (194)
T COG3963 31 PSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAF 104 (194)
T ss_pred CCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchh
Confidence 5667777777663 235677999999999999999987765 4899999999 888877665 44678888877
Q ss_pred CCCccc-cccCCCCcEEEEcccccCC--cchHHHHHHHHHHhcCCCceEEEEEe
Q 046623 113 SDDLSQ-LSELGEFDMVIMSDVFYDP--EEMVGLGKTLKRVCGTGRHTVVWAVS 163 (218)
Q Consensus 113 ~~~~~~-~~~~~~~D~Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~~~ 163 (218)
+..... ......||.|++.-|+-+. ....++++.+...|.+||.++.+.+.
T Consensus 105 ~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 105 DLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred hHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 655211 1245679999998777653 45678999999999999966655554
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.8e-08 Score=76.10 Aligned_cols=105 Identities=19% Similarity=0.277 Sum_probs=71.6
Q ss_pred CCCCCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCC--------------------------
Q 046623 50 FDFQNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLG-------------------------- 101 (218)
Q Consensus 50 ~~~~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~-------------------------- 101 (218)
+.+.+..+|||||.+|.+++.++ ..++..+.|+|+++ .++.|+++++...-.
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 34678899999999999999997 45778999999999 999999998654210
Q ss_pred --------CceEEEEeec--CCCCccccccCCCCcEEEEccccc------CCcchHHHHHHHHHHhcCCC
Q 046623 102 --------GRVEVRELVW--GSDDLSQLSELGEFDMVIMSDVFY------DPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 102 --------~~~~~~~~d~--~~~~~~~~~~~~~~D~Iv~~~~~~------~~~~~~~~l~~~~~lL~~gG 155 (218)
+++.+..... +....- ......||+|+|-.+.- +.+-+..++..+.++|.|||
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgG 203 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGG 203 (288)
T ss_pred ccccccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCc
Confidence 0011110000 000000 11446899999855431 23558899999999999999
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.1e-09 Score=85.29 Aligned_cols=130 Identities=26% Similarity=0.327 Sum_probs=92.0
Q ss_pred CcCCCCccccccccccchhHHHHHHHHhcC---C-CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHH-HHHH
Q 046623 20 NVCDSVTGRPLTGAWLWDSALILAQFISTH---F-DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLP-GLIN 93 (218)
Q Consensus 20 ~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~---~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~-~a~~ 93 (218)
+.+|..++-|+.|++.|+++..+..++.+. . ...+++|||+|||+|..++.+...+...++..|.|. .++ ....
T Consensus 79 ~~sDl~p~vyEGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~p 158 (282)
T KOG2920|consen 79 NHSDLVPGVYEGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLP 158 (282)
T ss_pred cccccCCceeecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeeccc
Confidence 678999999999999999999999998853 1 267899999999999999999888767888888887 552 1112
Q ss_pred HHHHhCC--------CCceEEEEe---ecCCCCccccccCC--CCcEEEEcccccCCcchHHH-HHHHHHHhcCCC
Q 046623 94 NVEANGL--------GGRVEVREL---VWGSDDLSQLSELG--EFDMVIMSDVFYDPEEMVGL-GKTLKRVCGTGR 155 (218)
Q Consensus 94 ~~~~~~~--------~~~~~~~~~---d~~~~~~~~~~~~~--~~D~Iv~~~~~~~~~~~~~~-l~~~~~lL~~gG 155 (218)
|+..+.. ..-..+..- ||.- ...+ .||+|.++..+|.......+ ......+++++|
T Consensus 159 n~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~------~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~ 228 (282)
T KOG2920|consen 159 NILVNSHAGVEEKENHKVDEILNSLLSDGVF------NHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDG 228 (282)
T ss_pred ceecchhhhhhhhhcccceeccccccccchh------hhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccc
Confidence 2111110 000111111 2211 1233 89999999999998777777 666677888888
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.3e-07 Score=84.14 Aligned_cols=125 Identities=15% Similarity=0.142 Sum_probs=86.9
Q ss_pred cchhHHHHHHHHhcCC--CCCCCeEEEECCCCCHHHHHHHHhC-------------------------------------
Q 046623 35 LWDSALILAQFISTHF--DFQNKSVLELGAGAGLPGLTAARLG------------------------------------- 75 (218)
Q Consensus 35 ~w~~~~~l~~~l~~~~--~~~~~~vLDlG~G~G~~~~~l~~~~------------------------------------- 75 (218)
..+--..|+..+.... ..++..++|.+||+|++.+.++...
T Consensus 170 ~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~ 249 (702)
T PRK11783 170 EAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERAR 249 (702)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence 3344445666555422 2357899999999999999886421
Q ss_pred ------CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC----cchHHHH
Q 046623 76 ------ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP----EEMVGLG 144 (218)
Q Consensus 76 ------~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~----~~~~~~l 144 (218)
..+++++|+++ +++.|+.|+..+++.+.+++..+|+.+.... ...+++|+|++|+|+... .+...+.
T Consensus 250 ~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~--~~~~~~d~IvtNPPYg~r~~~~~~l~~lY 327 (702)
T PRK11783 250 AGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNP--LPKGPTGLVISNPPYGERLGEEPALIALY 327 (702)
T ss_pred hcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccc--cccCCCCEEEECCCCcCccCchHHHHHHH
Confidence 12689999999 9999999999999988899999988765421 023579999999998643 2334454
Q ss_pred HHHHHHhc---CCCceEEEE
Q 046623 145 KTLKRVCG---TGRHTVVWA 161 (218)
Q Consensus 145 ~~~~~lL~---~gG~~~i~~ 161 (218)
..+.+.++ +|+...+++
T Consensus 328 ~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 328 SQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHHHHhCCCCeEEEEe
Confidence 55544544 677444443
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.3e-07 Score=70.77 Aligned_cols=142 Identities=13% Similarity=0.169 Sum_probs=83.7
Q ss_pred cchhHH--HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecC
Q 046623 35 LWDSAL--ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWG 112 (218)
Q Consensus 35 ~w~~~~--~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 112 (218)
.|+... .+.+++.+. .++..|.|+|||.+.++..+. .+ ..|+..|.-. .+-.+..+|+.
T Consensus 54 ~WP~nPvd~iI~~l~~~--~~~~viaD~GCGdA~la~~~~-~~-~~V~SfDLva---------------~n~~Vtacdia 114 (219)
T PF05148_consen 54 KWPVNPVDVIIEWLKKR--PKSLVIADFGCGDAKLAKAVP-NK-HKVHSFDLVA---------------PNPRVTACDIA 114 (219)
T ss_dssp TSSS-HHHHHHHHHCTS---TTS-EEEES-TT-HHHHH---S----EEEEESS----------------SSTTEEES-TT
T ss_pred cCCCCcHHHHHHHHHhc--CCCEEEEECCCchHHHHHhcc-cC-ceEEEeeccC---------------CCCCEEEecCc
Confidence 466543 455666542 345699999999999886553 12 3699999632 11346778887
Q ss_pred CCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc-CChHHHHHHHHHhCCcEEEEEEccC
Q 046623 113 SDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR-TRTGDCLHELIMSQGFRVIELTCQL 191 (218)
Q Consensus 113 ~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~-~~~~~~~~~~~~~~gf~~~~~~~~~ 191 (218)
..+. +.+++|++|+.-.+- ..+...++.++.|+||+||.+.|. ....| .....+.+.+ ...||......
T Consensus 115 ~vPL----~~~svDv~VfcLSLM-GTn~~~fi~EA~RvLK~~G~L~IA-EV~SRf~~~~~F~~~~-~~~GF~~~~~d--- 184 (219)
T PF05148_consen 115 NVPL----EDESVDVAVFCLSLM-GTNWPDFIREANRVLKPGGILKIA-EVKSRFENVKQFIKAL-KKLGFKLKSKD--- 184 (219)
T ss_dssp S-S------TT-EEEEEEES----SS-HHHHHHHHHHHEEEEEEEEEE-EEGGG-S-HHHHHHHH-HCTTEEEEEEE---
T ss_pred cCcC----CCCceeEEEEEhhhh-CCCcHHHHHHHHheeccCcEEEEE-EecccCcCHHHHHHHH-HHCCCeEEecc---
Confidence 7766 778999999754442 367899999999999999943333 33334 3465666665 99999998753
Q ss_pred CCCCCCceeEEEecCC
Q 046623 192 GGGCPEAFAVYELIPP 207 (218)
Q Consensus 192 ~~~~~~~~~l~~~~~~ 207 (218)
.....+.++.|.+.
T Consensus 185 --~~n~~F~~f~F~K~ 198 (219)
T PF05148_consen 185 --ESNKHFVLFEFKKI 198 (219)
T ss_dssp ----STTEEEEEEEE-
T ss_pred --cCCCeEEEEEEEEc
Confidence 22357888888665
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.4e-07 Score=74.92 Aligned_cols=77 Identities=23% Similarity=0.205 Sum_probs=60.0
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCc-
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFD- 126 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D- 126 (218)
....++.+|||+|||+|.++..+++.+. +++++|+++ +++.++.++.. ..+++++.+|+..... ..+|
T Consensus 25 ~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~------~~~d~ 94 (253)
T TIGR00755 25 ANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDL------PDFPK 94 (253)
T ss_pred cCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCCh------hHcCC
Confidence 3335678999999999999999988765 799999999 99998877643 2458889888876543 1355
Q ss_pred --EEEEccccc
Q 046623 127 --MVIMSDVFY 135 (218)
Q Consensus 127 --~Iv~~~~~~ 135 (218)
.|++|.|++
T Consensus 95 ~~~vvsNlPy~ 105 (253)
T TIGR00755 95 QLKVVSNLPYN 105 (253)
T ss_pred cceEEEcCChh
Confidence 888877754
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-07 Score=78.16 Aligned_cols=154 Identities=12% Similarity=0.103 Sum_probs=89.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHH--------hCCCeEEEecCcc-hHHHHHHHHHHhCCCCc-eEEEEeecCCCCcccccc
Q 046623 52 FQNKSVLELGAGAGLPGLTAAR--------LGATRVVLTDVKP-LLPGLINNVEANGLGGR-VEVRELVWGSDDLSQLSE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~--------~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~ 121 (218)
.++.+|+|.+||+|.+...+.+ ....+++|+|+++ ++..++-|+...+.... ..+...|....... ..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~--~~ 122 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKF--IK 122 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSC--TS
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccc--cc
Confidence 4566899999999999888754 2445899999999 99999988877765432 34666665433221 02
Q ss_pred CCCCcEEEEcccccCC--c-------------------chHHHHHHHHHHhcCCCceEEEEEeec--cCChHHHHHHHHH
Q 046623 122 LGEFDMVIMSDVFYDP--E-------------------EMVGLGKTLKRVCGTGRHTVVWAVSEV--RTRTGDCLHELIM 178 (218)
Q Consensus 122 ~~~~D~Iv~~~~~~~~--~-------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~--~~~~~~~~~~~~~ 178 (218)
...||+|++|+|+... . .-..++..+.+.|+++|++.+++.... .......++..+.
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll 202 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLL 202 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHH
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHH
Confidence 4689999999998543 0 012477888999999997777766543 2333344444433
Q ss_pred hC-CcEE-EEEEccCCCCCCCceeEEEecCC
Q 046623 179 SQ-GFRV-IELTCQLGGGCPEAFAVYELIPP 207 (218)
Q Consensus 179 ~~-gf~~-~~~~~~~~~~~~~~~~l~~~~~~ 207 (218)
+. .... +..|-...........++-+.+.
T Consensus 203 ~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~ 233 (311)
T PF02384_consen 203 ENGYIEAVISLPSNLFKPTGVPTSILILNKK 233 (311)
T ss_dssp HHEEEEEEEE--TTSSSSSSS-EEEEEEEES
T ss_pred hhchhhEEeecccceecccCcCceEEEEeec
Confidence 33 3222 22354444444444455555433
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-06 Score=73.09 Aligned_cols=106 Identities=23% Similarity=0.301 Sum_probs=80.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC---------------------------------C-------eEEEecCcc-hHHH
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA---------------------------------T-------RVVLTDVKP-LLPG 90 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~---------------------------------~-------~v~~~D~~~-~~~~ 90 (218)
.++..++|.-||+|++.+.+|..+. . .++++|+++ +++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 4557999999999999999876542 0 377999999 9999
Q ss_pred HHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC----c----chHHHHHHHHHHhcCCCceEEEEE
Q 046623 91 LINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP----E----EMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 91 a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~----~----~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
|+.|++..|+.+.++|..+|..+... +.+.+|+||+|+|+... . .+..+.+.+.+.++.-+ ..++++
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~----~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws-~~v~tt 344 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKE----PLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWS-RYVFTT 344 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCC----CCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCc-eEEEEc
Confidence 99999999999999999999877653 33789999999998642 1 23344455555565544 455544
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.8e-09 Score=79.76 Aligned_cols=119 Identities=16% Similarity=0.151 Sum_probs=85.9
Q ss_pred ccchhHHHHHHHHhc--CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEee
Q 046623 34 WLWDSALILAQFIST--HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELV 110 (218)
Q Consensus 34 ~~w~~~~~l~~~l~~--~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d 110 (218)
|.|-+...++..+.. ........|+|..||.|.-.+..+..++ .|+++|++| -+..|+.|++..|++++++|+.+|
T Consensus 73 wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD 151 (263)
T KOG2730|consen 73 WFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGD 151 (263)
T ss_pred eEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEech
Confidence 445555555555544 1112556899999999999998888876 899999999 999999999999999999999999
Q ss_pred cCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcC
Q 046623 111 WGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGT 153 (218)
Q Consensus 111 ~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~ 153 (218)
+.+...........+|+++.+++...+.-...-+-.+...+.|
T Consensus 152 ~ld~~~~lq~~K~~~~~vf~sppwggp~y~~~~~~DL~~~~~p 194 (263)
T KOG2730|consen 152 FLDLASKLKADKIKYDCVFLSPPWGGPSYLRADVYDLETHLKP 194 (263)
T ss_pred HHHHHHHHhhhhheeeeeecCCCCCCcchhhhhhhhhhhhcch
Confidence 9876533333456688999998886554333333333333333
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-07 Score=71.69 Aligned_cols=77 Identities=17% Similarity=0.017 Sum_probs=62.6
Q ss_pred EEecCcc-hHHHHHHHHHHhC--CCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCc
Q 046623 80 VLTDVKP-LLPGLINNVEANG--LGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 80 ~~~D~~~-~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~ 156 (218)
+|+|+|+ +++.|+++.+..+ ...+++++.+|..+.+. +.++||+|++...+++..+...+++++.++|||||.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~ 76 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF----DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSR 76 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC----CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeE
Confidence 4799999 9999987664322 22458999999877654 567899999999999889999999999999999996
Q ss_pred eEEE
Q 046623 157 TVVW 160 (218)
Q Consensus 157 ~~i~ 160 (218)
++++
T Consensus 77 l~i~ 80 (160)
T PLN02232 77 VSIL 80 (160)
T ss_pred EEEE
Confidence 5555
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2e-06 Score=72.84 Aligned_cols=149 Identities=19% Similarity=0.142 Sum_probs=102.4
Q ss_pred cchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCC---CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEee
Q 046623 35 LWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGA---TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELV 110 (218)
Q Consensus 35 ~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~---~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d 110 (218)
+.+.+..+...+.. ..++.+|||+.++.|.=+.+++.... ..|+++|.++ -+..++.|+++.|+.+ +.+...|
T Consensus 140 vQd~sS~l~a~~L~--p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d 216 (355)
T COG0144 140 VQDEASQLPALVLD--PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKD 216 (355)
T ss_pred EcCHHHHHHHHHcC--CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecc
Confidence 34544444444333 35778999999999987777765432 3579999999 9999999999999876 6666665
Q ss_pred cCCCCccccccCCCCcEEEEcccccCCc----------------------chHHHHHHHHHHhcCCCceEEEEEeeccCC
Q 046623 111 WGSDDLSQLSELGEFDMVIMSDVFYDPE----------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTR 168 (218)
Q Consensus 111 ~~~~~~~~~~~~~~~D~Iv~~~~~~~~~----------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~ 168 (218)
...... .....++||.|++..|+.... ...+++..+.++|||||.++.-+++-....
T Consensus 217 ~~~~~~-~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eE 295 (355)
T COG0144 217 ARRLAE-LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEE 295 (355)
T ss_pred cccccc-cccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhc
Confidence 443221 111223699999988875431 256789999999999996555566555556
Q ss_pred hHHHHHHHHHhC-CcEEEEE
Q 046623 169 TGDCLHELIMSQ-GFRVIEL 187 (218)
Q Consensus 169 ~~~~~~~~~~~~-gf~~~~~ 187 (218)
-++.+..++.+. +|.....
T Consensus 296 NE~vV~~~L~~~~~~~~~~~ 315 (355)
T COG0144 296 NEEVVERFLERHPDFELEPV 315 (355)
T ss_pred CHHHHHHHHHhCCCceeecc
Confidence 666676765544 6666555
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.6e-08 Score=74.83 Aligned_cols=129 Identities=19% Similarity=0.154 Sum_probs=84.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
+..+.||.|||-|-.+..+...-..+|-.+|..+ +++.|++.+.... ....++....+++..+ ...+||+|++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P----~~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTP----EEGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG--------TT-EEEEEEE
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccC----CCCcEeEEEeh
Confidence 4568999999999999877433357999999999 9999987764421 1224555555444433 34799999997
Q ss_pred ccccCC--cchHHHHHHHHHHhcCCCceEEEE---Eeecc----------CChHHHHHHHHHhCCcEEEEE
Q 046623 132 DVFYDP--EEMVGLGKTLKRVCGTGRHTVVWA---VSEVR----------TRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 132 ~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~---~~~~~----------~~~~~~~~~~~~~~gf~~~~~ 187 (218)
=++.|. ++..++++++.+.|+|+| ++++- +.... ....+.+..++++.|+.+...
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L~~~G-~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQALKPNG-VIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHEEEEE-EEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred HhhccCCHHHHHHHHHHHHHhCcCCc-EEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 777664 678999999999999999 33331 11111 125677888889999999886
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.4e-07 Score=73.89 Aligned_cols=97 Identities=22% Similarity=0.342 Sum_probs=76.7
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEee
Q 046623 32 GAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELV 110 (218)
Q Consensus 32 g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d 110 (218)
|-|+-.-...+...+...+..+++.|||+|.|+|.++..+.+.+. +|+++|+++ ++....+.....-.++..+++.+|
T Consensus 37 GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD 115 (315)
T KOG0820|consen 37 GQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGD 115 (315)
T ss_pred chhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecc
Confidence 445555555555666656667888999999999999999998876 999999999 988888887666555778999999
Q ss_pred cCCCCccccccCCCCcEEEEccccc
Q 046623 111 WGSDDLSQLSELGEFDMVIMSDVFY 135 (218)
Q Consensus 111 ~~~~~~~~~~~~~~~D~Iv~~~~~~ 135 (218)
+...+. ..||.+++|-|+.
T Consensus 116 ~lK~d~------P~fd~cVsNlPyq 134 (315)
T KOG0820|consen 116 FLKTDL------PRFDGCVSNLPYQ 134 (315)
T ss_pred cccCCC------cccceeeccCCcc
Confidence 876643 5799999987764
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.6e-07 Score=72.35 Aligned_cols=118 Identities=15% Similarity=0.071 Sum_probs=86.6
Q ss_pred CeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc-
Q 046623 55 KSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS- 131 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~- 131 (218)
..+||||||.|.+.+.+|+. +-..++|+|+.. .+..+.+.+.+.++. ++.++..|...... ...+.++.|-|.++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~-~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLD-YLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHH-hcCCCCCeeEEEEEC
Confidence 48999999999999998855 446899999999 999999998888875 58888777654321 22245589988875
Q ss_pred -ccccCC------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHH
Q 046623 132 -DVFYDP------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHEL 176 (218)
Q Consensus 132 -~~~~~~------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~ 176 (218)
||.+.. =-...+++.+.+.|+||| .+...+....+.+..+...
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG--~l~~aTD~~~y~e~~~~~~ 177 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGG--VLHFATDNEEYFEWMMLEV 177 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCC--EEEEEecCHHHHHHHHHHH
Confidence 443211 235789999999999999 7777777666555533333
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.1e-06 Score=70.31 Aligned_cols=84 Identities=29% Similarity=0.405 Sum_probs=49.6
Q ss_pred CCeEEEECCCCC-HHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh-CCCCceEEEEeecCCCCccc-cccCCCCcEEE
Q 046623 54 NKSVLELGAGAG-LPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN-GLGGRVEVRELVWGSDDLSQ-LSELGEFDMVI 129 (218)
Q Consensus 54 ~~~vLDlG~G~G-~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~-~~~~~~~D~Iv 129 (218)
..++||||+|.. ...+..++....+.+|+|+++ +++.|++|++.| ++..+++++...-....... ....+.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 458999999965 445554443346999999999 999999999999 88888988865322222211 12446899999
Q ss_pred EcccccCC
Q 046623 130 MSDVFYDP 137 (218)
Q Consensus 130 ~~~~~~~~ 137 (218)
||+|||..
T Consensus 183 CNPPFy~s 190 (299)
T PF05971_consen 183 CNPPFYSS 190 (299)
T ss_dssp E-----SS
T ss_pred cCCccccC
Confidence 99999864
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.1e-06 Score=67.45 Aligned_cols=159 Identities=19% Similarity=0.155 Sum_probs=101.6
Q ss_pred ccchhHHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHH-HHHHHHHhCCCCce-EEEEe
Q 046623 34 WLWDSALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPG-LINNVEANGLGGRV-EVREL 109 (218)
Q Consensus 34 ~~w~~~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~-a~~~~~~~~~~~~~-~~~~~ 109 (218)
++-.++..|...+.. .-+.+++.+||+|+.||.++..+.+.|+++|+++|... .+.. .+.. .++ .....
T Consensus 59 yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d-------~rV~~~E~t 131 (245)
T COG1189 59 YVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND-------PRVIVLERT 131 (245)
T ss_pred ccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC-------CcEEEEecC
Confidence 344677888888877 33478999999999999999999999999999999887 4433 3222 333 33333
Q ss_pred ecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc-------------------CChH
Q 046623 110 VWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR-------------------TRTG 170 (218)
Q Consensus 110 d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~-------------------~~~~ 170 (218)
++....... ..+..|++++.-.|.+ ...++..+..++++++.++.++-+... ....
T Consensus 132 N~r~l~~~~--~~~~~d~~v~DvSFIS---L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~ 206 (245)
T COG1189 132 NVRYLTPED--FTEKPDLIVIDVSFIS---LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLS 206 (245)
T ss_pred ChhhCCHHH--cccCCCeEEEEeehhh---HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHH
Confidence 333333221 2347899999666543 577888899999999855544332211 1133
Q ss_pred HHHHHHHHhCCcEEEEEE-ccCCCCCCCceeEEEec
Q 046623 171 DCLHELIMSQGFRVIELT-CQLGGGCPEAFAVYELI 205 (218)
Q Consensus 171 ~~~~~~~~~~gf~~~~~~-~~~~~~~~~~~~l~~~~ 205 (218)
+...++ .+.||.+..+. .....++.-...++.+.
T Consensus 207 ~i~~~~-~~~g~~~~gl~~Spi~G~~GNiE~l~~~~ 241 (245)
T COG1189 207 KIENFA-KELGFQVKGLIKSPIKGGKGNIEFLLLLK 241 (245)
T ss_pred HHHHHH-hhcCcEEeeeEccCccCCCCcEeeeeeee
Confidence 444444 77899998883 33333333334444443
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.4e-06 Score=65.99 Aligned_cols=154 Identities=17% Similarity=0.178 Sum_probs=92.2
Q ss_pred ccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceE
Q 046623 28 RPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVE 105 (218)
Q Consensus 28 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~ 105 (218)
.+.+++..++++..=+.++.+..+..|++||-+|=.- ..|+.++. ..+++++.+|+++ .++...+.+++.|++ ++
T Consensus 19 ~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~ 95 (243)
T PF01861_consen 19 ELDQGYATPETTLRRAALMAERGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IE 95 (243)
T ss_dssp GGT---B-HHHHHHHHHHHHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EE
T ss_pred ccccccccHHHHHHHHHHHHhcCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eE
Confidence 3456777888888888888887778899999999554 34444443 3346999999999 999999999999987 89
Q ss_pred EEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChH--HHHHHHHHhCCcE
Q 046623 106 VRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTG--DCLHELIMSQGFR 183 (218)
Q Consensus 106 ~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~--~~~~~~~~~~gf~ 183 (218)
....|+.+..+.. ..++||+++..|| +-.+-..-++.+....|+..|...++.......... -.++..+.+.||.
T Consensus 96 ~~~~DlR~~LP~~--~~~~fD~f~TDPP-yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~ 172 (243)
T PF01861_consen 96 AVHYDLRDPLPEE--LRGKFDVFFTDPP-YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLV 172 (243)
T ss_dssp EE---TTS---TT--TSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--E
T ss_pred EEEecccccCCHH--HhcCCCEEEeCCC-CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcC
Confidence 9999988776432 3589999999555 445667788888888998777555444444322221 2355555799999
Q ss_pred EEEE
Q 046623 184 VIEL 187 (218)
Q Consensus 184 ~~~~ 187 (218)
+..+
T Consensus 173 i~di 176 (243)
T PF01861_consen 173 ITDI 176 (243)
T ss_dssp EEEE
T ss_pred HHHH
Confidence 9887
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.8e-07 Score=69.15 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=85.6
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
.++++.-++.. ...+++||+|.=+|..++..|.. + ..+|+++|+++ +.+....-.+..++...++++.++..+.
T Consensus 61 ~g~fl~~li~~---~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~es 137 (237)
T KOG1663|consen 61 KGQFLQMLIRL---LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALES 137 (237)
T ss_pred HHHHHHHHHHH---hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhh
Confidence 34444444443 56789999999999988887644 2 25999999999 9999988889999988899999887665
Q ss_pred Ccccc--ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 115 DLSQL--SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 115 ~~~~~--~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
..+.. ...++||.++...- -.......+++.+++++||
T Consensus 138 Ld~l~~~~~~~tfDfaFvDad---K~nY~~y~e~~l~Llr~GG 177 (237)
T KOG1663|consen 138 LDELLADGESGTFDFAFVDAD---KDNYSNYYERLLRLLRVGG 177 (237)
T ss_pred HHHHHhcCCCCceeEEEEccc---hHHHHHHHHHHHhhccccc
Confidence 43322 24679999998422 2445688899999999999
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.9e-06 Score=67.79 Aligned_cols=127 Identities=16% Similarity=0.099 Sum_probs=94.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.+|.+|+|-|+|+|.++.++++. +-.+++..|.-. -.+.+.+-+++.++.+++++..-|........ .+..+|.|
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~--ks~~aDaV 181 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI--KSLKADAV 181 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc--cccccceE
Confidence 68999999999999999999765 236999999999 89999999999999999999998887664321 35789999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
++.- +.+...+..+.+.|+.+|..++-.+... +.+....+.+ .+.||.-+.+
T Consensus 182 FLDl-----PaPw~AiPha~~~lk~~g~r~csFSPCI-EQvqrtce~l-~~~gf~~i~~ 233 (314)
T KOG2915|consen 182 FLDL-----PAPWEAIPHAAKILKDEGGRLCSFSPCI-EQVQRTCEAL-RSLGFIEIET 233 (314)
T ss_pred EEcC-----CChhhhhhhhHHHhhhcCceEEeccHHH-HHHHHHHHHH-HhCCCceEEE
Confidence 8833 3445666777789998884444333222 2344444444 7888876554
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.5e-06 Score=65.23 Aligned_cols=152 Identities=17% Similarity=0.026 Sum_probs=99.0
Q ss_pred hhHHHHHHHHhcCCC-CCCCeEEEECCCCCHHHHHHHHhCC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecC
Q 046623 37 DSALILAQFISTHFD-FQNKSVLELGAGAGLPGLTAARLGA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWG 112 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~ 112 (218)
.+++.|.+...+... .++.+|+||||..|.++..+++... ..|+++|+.| ... ..+.++.+|+.
T Consensus 28 RAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~------------~~V~~iq~d~~ 95 (205)
T COG0293 28 RAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI------------PGVIFLQGDIT 95 (205)
T ss_pred hHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC------------CCceEEeeecc
Confidence 355667777666433 4678999999999999999976533 3599999988 331 23889999988
Q ss_pred CCCcccc----ccCCCCcEEEEcccc---cCC--------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHH
Q 046623 113 SDDLSQL----SELGEFDMVIMSDVF---YDP--------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELI 177 (218)
Q Consensus 113 ~~~~~~~----~~~~~~D~Iv~~~~~---~~~--------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~ 177 (218)
.....+. ....++|+|++.... .+. ......++.+...|+|+|.+++-.... ...++.+..+
T Consensus 96 ~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg--~~~~~~l~~~- 172 (205)
T COG0293 96 DEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG--EDFEDLLKAL- 172 (205)
T ss_pred CccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC--CCHHHHHHHH-
Confidence 7653221 133457999963221 111 123455666677999999555444433 5566777776
Q ss_pred HhCCcEEEEE--EccCCCCCCCceeEEEe
Q 046623 178 MSQGFRVIEL--TCQLGGGCPEAFAVYEL 204 (218)
Q Consensus 178 ~~~gf~~~~~--~~~~~~~~~~~~~l~~~ 204 (218)
...|...++ |...+....+.+.+...
T Consensus 173 -~~~F~~v~~~KP~aSR~~S~E~y~v~~~ 200 (205)
T COG0293 173 -RRLFRKVKIFKPKASRKRSREIYLVAKG 200 (205)
T ss_pred -HHhhceeEEecCccccCCCceEEEEEec
Confidence 567777776 66666666666665443
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.7e-07 Score=74.92 Aligned_cols=101 Identities=17% Similarity=0.129 Sum_probs=73.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhC---CCCceEEEEeecCCCCccccccCCCCcE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANG---LGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
..++||.+|+|.|..+..+.+. +..+++.+|+++ .++.+++.+..++ -.++++++..|...... ...++||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~---~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE---KRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh---hCCCCccE
Confidence 4679999999999999988775 456899999999 9999998876542 13678888877654431 13468999
Q ss_pred EEEcc--cccCC-c---chHHHHH-HHHHHhcCCCc
Q 046623 128 VIMSD--VFYDP-E---EMVGLGK-TLKRVCGTGRH 156 (218)
Q Consensus 128 Iv~~~--~~~~~-~---~~~~~l~-~~~~lL~~gG~ 156 (218)
|++.. +.... . -..++++ .+.+.|+|||.
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gv 215 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGI 215 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcE
Confidence 99842 11100 0 1356777 88999999993
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.1e-06 Score=66.08 Aligned_cols=115 Identities=18% Similarity=0.130 Sum_probs=81.3
Q ss_pred hHHHHHHHHhc---CCCCCCCeEEEECCCCCHHHHHHHHh-CC--CeEEEecCcc-hHHHHHHHHHHhCC---------C
Q 046623 38 SALILAQFIST---HFDFQNKSVLELGAGAGLPGLTAARL-GA--TRVVLTDVKP-LLPGLINNVEANGL---------G 101 (218)
Q Consensus 38 ~~~~l~~~l~~---~~~~~~~~vLDlG~G~G~~~~~l~~~-~~--~~v~~~D~~~-~~~~a~~~~~~~~~---------~ 101 (218)
++..+-..+.+ .+..++..+||+|+|+|.++..+++. ++ ...+++|.=+ .++.+++|+...-. .
T Consensus 64 SAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~ 143 (237)
T KOG1661|consen 64 SAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKR 143 (237)
T ss_pred cchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhcc
Confidence 44444444433 22468899999999999998887633 33 2449999888 99999999876531 2
Q ss_pred CceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 102 GRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 102 ~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
.++.++.+|...... +..+||.|.+. +...++.+.+...|++||++++-..
T Consensus 144 ~~l~ivvGDgr~g~~----e~a~YDaIhvG------Aaa~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 144 GELSIVVGDGRKGYA----EQAPYDAIHVG------AAASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred CceEEEeCCccccCC----ccCCcceEEEc------cCccccHHHHHHhhccCCeEEEeec
Confidence 457788877665544 67899999986 3345666777778899996666544
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.9e-06 Score=74.18 Aligned_cols=83 Identities=18% Similarity=0.137 Sum_probs=56.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC---------CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-ccc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLG---------ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-LSE 121 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~---------~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~ 121 (218)
...+|||.+||+|.+...++... ..+++++|+++ ++..++.++...+. ....+...|........ ...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 45689999999999988875321 14789999999 99999999876651 12344444432221100 012
Q ss_pred CCCCcEEEEcccccC
Q 046623 122 LGEFDMVIMSDVFYD 136 (218)
Q Consensus 122 ~~~~D~Iv~~~~~~~ 136 (218)
.+.||+|+.|||+..
T Consensus 110 ~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 110 LDLFDIVITNPPYGR 124 (524)
T ss_pred cCcccEEEeCCCccc
Confidence 358999999999864
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.4e-06 Score=67.83 Aligned_cols=124 Identities=15% Similarity=0.187 Sum_probs=85.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
....|.|+|||-+-++. . -...|++.|.-. .+-.++.+|+.+.+. .+++.|+++..-
T Consensus 180 ~~~vIaD~GCGEakiA~---~-~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl----~d~svDvaV~CL 236 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---S-ERHKVHSFDLVA---------------VNERVIACDMRNVPL----EDESVDVAVFCL 236 (325)
T ss_pred CceEEEecccchhhhhh---c-cccceeeeeeec---------------CCCceeeccccCCcC----ccCcccEEEeeH
Confidence 45689999999977655 2 223788888521 225677888888766 778999999743
Q ss_pred cccCCcchHHHHHHHHHHhcCCCceEEEEEe-ecc-CChHHHHHHHHHhCCcEEEEEEccCCCCCCCceeEEEecCCc
Q 046623 133 VFYDPEEMVGLGKTLKRVCGTGRHTVVWAVS-EVR-TRTGDCLHELIMSQGFRVIELTCQLGGGCPEAFAVYELIPPM 208 (218)
Q Consensus 133 ~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~-~~~-~~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~l~~~~~~~ 208 (218)
.+ ...++..++.++.|+|++|| .++++- ..| .....+.+.+ ...||...+..... ..+.++.|.++.
T Consensus 237 SL-Mgtn~~df~kEa~RiLk~gG--~l~IAEv~SRf~dv~~f~r~l-~~lGF~~~~~d~~n-----~~F~lfefkK~~ 305 (325)
T KOG3045|consen 237 SL-MGTNLADFIKEANRILKPGG--LLYIAEVKSRFSDVKGFVRAL-TKLGFDVKHKDVSN-----KYFTLFEFKKTP 305 (325)
T ss_pred hh-hcccHHHHHHHHHHHhccCc--eEEEEehhhhcccHHHHHHHH-HHcCCeeeehhhhc-----ceEEEEEEecCC
Confidence 33 23678899999999999999 444432 223 3455666666 99999998874332 357777776654
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.9e-07 Score=68.93 Aligned_cols=95 Identities=23% Similarity=0.190 Sum_probs=76.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
..+.+.|+|+|+|.++..++.. +.+|++++.+| ....+.+|+..++.. +++++.+|...... +..|+|+|-
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~f------e~ADvvicE 103 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYDF------ENADVVICE 103 (252)
T ss_pred hhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEecccccccc------cccceeHHH
Confidence 3468999999999999999887 67999999999 999999998777764 58999988776543 678999972
Q ss_pred --ccccCCcchHHHHHHHHHHhcCCC
Q 046623 132 --DVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 132 --~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
+...-.+...+.+..+.+.|+.++
T Consensus 104 mlDTaLi~E~qVpV~n~vleFLr~d~ 129 (252)
T COG4076 104 MLDTALIEEKQVPVINAVLEFLRYDP 129 (252)
T ss_pred HhhHHhhcccccHHHHHHHHHhhcCC
Confidence 222234667788888888888887
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-06 Score=69.54 Aligned_cols=88 Identities=17% Similarity=0.106 Sum_probs=67.2
Q ss_pred HHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccc
Q 046623 42 LAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLS 120 (218)
Q Consensus 42 l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (218)
+.+.+......++.+|||||+|.|.++..+++.+. +|+++|+++ .++.+++..... .+++++.+|.........
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~---~n~~vi~~DaLk~d~~~l- 93 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPY---DNLTVINGDALKFDFPSL- 93 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccc---cceEEEeCchhcCcchhh-
Confidence 44444443334578999999999999999999876 899999999 888888776522 569999999887765211
Q ss_pred cCCCCcEEEEcccccC
Q 046623 121 ELGEFDMVIMSDVFYD 136 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~ 136 (218)
..++.|++|-|++-
T Consensus 94 --~~~~~vVaNlPY~I 107 (259)
T COG0030 94 --AQPYKVVANLPYNI 107 (259)
T ss_pred --cCCCEEEEcCCCcc
Confidence 16899999888754
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.5e-07 Score=73.74 Aligned_cols=99 Identities=16% Similarity=0.169 Sum_probs=71.4
Q ss_pred CCeEEEECCCCC----HHHHHHHHhC-----CCeEEEecCcc-hHHHHHHHHH------------------H-----hC-
Q 046623 54 NKSVLELGAGAG----LPGLTAARLG-----ATRVVLTDVKP-LLPGLINNVE------------------A-----NG- 99 (218)
Q Consensus 54 ~~~vLDlG~G~G----~~~~~l~~~~-----~~~v~~~D~~~-~~~~a~~~~~------------------~-----~~- 99 (218)
..+|+..||.+| .+++.+.... ..+|+|+|+|+ +++.|++..- . .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 3444444421 24799999999 9999877620 0 00
Q ss_pred ------CCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC--cchHHHHHHHHHHhcCCC
Q 046623 100 ------LGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP--EEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 100 ------~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG 155 (218)
+...+.|...|+.+... .+.+.||+|+|.+++.+. +....+++.+.+.|+|||
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~---~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG 256 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQW---AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDG 256 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCC---ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCc
Confidence 22457788777765332 135789999998887553 568899999999999999
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.5e-06 Score=74.57 Aligned_cols=128 Identities=11% Similarity=-0.014 Sum_probs=89.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.+..+||||||.|.+...+|+. +-..++|+|+.. .+..+.......++.+ +.++..|+... ....+.+++|-|++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~--~~~~~~~sv~~i~i 423 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLI--LNDLPNNSLDGIYI 423 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHH--HHhcCcccccEEEE
Confidence 3568999999999999998755 446899999999 8877777777777653 66666554311 11225678999987
Q ss_pred cccccCC--------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhC-CcEEEE
Q 046623 131 SDVFYDP--------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQ-GFRVIE 186 (218)
Q Consensus 131 ~~~~~~~--------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~-gf~~~~ 186 (218)
+.|=-++ =-..++++.+.++|+||| .+.+.+....+....+..+ ... +|....
T Consensus 424 ~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG--~i~~~TD~~~y~~~~~~~~-~~~~~f~~~~ 485 (506)
T PRK01544 424 LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNG--NLVFASDIENYFYEAIELI-QQNGNFEIIN 485 (506)
T ss_pred ECCCCCCCCCCccccccCHHHHHHHHHhcCCCC--EEEEEcCCHHHHHHHHHHH-HhCCCeEecc
Confidence 5442221 125789999999999999 6666666666666666665 444 476543
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.42 E-value=2e-06 Score=70.67 Aligned_cols=182 Identities=18% Similarity=0.207 Sum_probs=115.3
Q ss_pred ccccc-cchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceE
Q 046623 30 LTGAW-LWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVE 105 (218)
Q Consensus 30 ~~g~~-~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~ 105 (218)
..|+. +++.+..+...+.. ..++.+|||+.++.|.=+..++.. + ...+++.|+++ -+..++.|+.+.|+.+ +.
T Consensus 63 ~~G~~~vQd~sS~l~~~~L~--~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~ 139 (283)
T PF01189_consen 63 KNGLFYVQDESSQLVALALD--PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VI 139 (283)
T ss_dssp HTTSEEEHHHHHHHHHHHHT--TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EE
T ss_pred hCCcEEeccccccccccccc--ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EE
Confidence 34443 56666555555443 257789999999999988887644 3 36999999999 9999999999998764 55
Q ss_pred EEEeecCCCCccccccCCCCcEEEEcccccCC----------------------cchHHHHHHHHHHh----cCCCceEE
Q 046623 106 VRELVWGSDDLSQLSELGEFDMVIMSDVFYDP----------------------EEMVGLGKTLKRVC----GTGRHTVV 159 (218)
Q Consensus 106 ~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~----------------------~~~~~~l~~~~~lL----~~gG~~~i 159 (218)
+...|...... ......||.|++..|+... ....++++.+.+++ +|||.++.
T Consensus 140 ~~~~D~~~~~~--~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvY 217 (283)
T PF01189_consen 140 VINADARKLDP--KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVY 217 (283)
T ss_dssp EEESHHHHHHH--HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEE
T ss_pred EEeeccccccc--cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEE
Confidence 55444332211 1133469999998877532 11567889999999 99995555
Q ss_pred EEEeeccCChHHHHHHHHHhC-CcEEEEEEccCCCC-C---CCceeEEEecCCccc-cccccc
Q 046623 160 WAVSEVRTRTGDCLHELIMSQ-GFRVIELTCQLGGG-C---PEAFAVYELIPPMHE-ENFHVA 216 (218)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~-gf~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~-~~~~~~ 216 (218)
-+++-....-++.++.++++. .|....++...... . ......+++.|..+. ++|++|
T Consensus 218 sTCS~~~eENE~vV~~fl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFFiA 280 (283)
T PF01189_consen 218 STCSLSPEENEEVVEKFLKRHPDFELVPIPLPEPPPGFKSYPIGEGCLRILPHRHGTDGFFIA 280 (283)
T ss_dssp EESHHHGGGTHHHHHHHHHHSTSEEEECCESSTCEEESSGGCTGGGSEEESTTTSSSSSEEEE
T ss_pred EeccHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccccCCCCEEEeCCCCCCCCCEEEE
Confidence 455555555666667665554 55555544332221 1 133445666666533 344443
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.5e-06 Score=67.66 Aligned_cols=99 Identities=16% Similarity=0.194 Sum_probs=71.3
Q ss_pred CCCeEEEECCCCC----HHHHHHHHhC------CCeEEEecCcc-hHHHHHHHHHH-----hCC----------------
Q 046623 53 QNKSVLELGAGAG----LPGLTAARLG------ATRVVLTDVKP-LLPGLINNVEA-----NGL---------------- 100 (218)
Q Consensus 53 ~~~~vLDlG~G~G----~~~~~l~~~~------~~~v~~~D~~~-~~~~a~~~~~~-----~~~---------------- 100 (218)
..-+|+-.||+|| .+++.+.+.. ..+++++|+|. +++.|+.-.-. .++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3569999999999 3455554443 24899999999 99888654311 111
Q ss_pred -------CCceEEEEeecCCCCccccccCCCCcEEEEcccccC--CcchHHHHHHHHHHhcCCC
Q 046623 101 -------GGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYD--PEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 101 -------~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~--~~~~~~~l~~~~~lL~~gG 155 (218)
...|.|...|+....+ ..+.||+|+|.+++-+ .+....+++.....|+|||
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~----~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG 235 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP----FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGG 235 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc----ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCC
Confidence 1346666666655543 4577999999998744 4667889999999999999
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.8e-07 Score=68.88 Aligned_cols=150 Identities=18% Similarity=0.140 Sum_probs=83.3
Q ss_pred hhHHHHHHHHhcCC-C-C-CCCeEEEECCCCCHHHHHHHHhC--CCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeec
Q 046623 37 DSALILAQFISTHF-D-F-QNKSVLELGAGAGLPGLTAARLG--ATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVW 111 (218)
Q Consensus 37 ~~~~~l~~~l~~~~-~-~-~~~~vLDlG~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 111 (218)
.+...|.+...... . . ++.+|||+||++|.++..+...+ ..+|+++|+.+.... ..+.++.+|.
T Consensus 4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-----------~~~~~i~~d~ 72 (181)
T PF01728_consen 4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-----------QNVSFIQGDI 72 (181)
T ss_dssp THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------------TTEEBTTGGG
T ss_pred HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-----------cceeeeeccc
Confidence 45677777777744 2 2 45899999999999999998776 469999999874111 1133334443
Q ss_pred CCCC----cccccc--CCCCcEEEEcccccCC-----------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHH
Q 046623 112 GSDD----LSQLSE--LGEFDMVIMSDVFYDP-----------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLH 174 (218)
Q Consensus 112 ~~~~----~~~~~~--~~~~D~Iv~~~~~~~~-----------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~ 174 (218)
.... ...... ..++|+|++.-..... ......+..+.++|++||.+++-+... ....+++.
T Consensus 73 ~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~--~~~~~~~~ 150 (181)
T PF01728_consen 73 TNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG--PEIEELIY 150 (181)
T ss_dssp EEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS--TTSHHHHH
T ss_pred chhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC--ccHHHHHH
Confidence 2221 111111 2689999985422111 223344455567899999544444332 22245555
Q ss_pred HHHHhCCcEEEEE--EccCCCCCCCceeE
Q 046623 175 ELIMSQGFRVIEL--TCQLGGGCPEAFAV 201 (218)
Q Consensus 175 ~~~~~~gf~~~~~--~~~~~~~~~~~~~l 201 (218)
.+ +..|....+ |...++...+++.+
T Consensus 151 ~l--~~~F~~v~~~Kp~~sr~~s~E~Ylv 177 (181)
T PF01728_consen 151 LL--KRCFSKVKIVKPPSSRSESSEEYLV 177 (181)
T ss_dssp HH--HHHHHHEEEEE-TTSBTTCBEEEEE
T ss_pred HH--HhCCeEEEEEECcCCCCCccEEEEE
Confidence 55 346665555 55555555554443
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.9e-06 Score=73.28 Aligned_cols=123 Identities=20% Similarity=0.145 Sum_probs=82.0
Q ss_pred hhHHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 37 DSALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 37 ~~~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
..+..|..++.. .....++.++|+.||||.+++.+++. ..+|+++++++ +++-|+.|+..|++++ .+|+.+-.++.
T Consensus 366 ~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~~ 443 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAEDL 443 (534)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccc-eeeeecchhhc
Confidence 445566666655 33356689999999999999999875 66999999999 9999999999999985 88998733333
Q ss_pred Cccccc-cCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEee
Q 046623 115 DLSQLS-ELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 115 ~~~~~~-~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~ 164 (218)
-..... ..++=+++...+|.. ...-..+++.+++.-++- .+++++..
T Consensus 444 ~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~~~--rlvyvSCn 491 (534)
T KOG2187|consen 444 FPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYKNPR--RLVYVSCN 491 (534)
T ss_pred cchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhccCcc--ceEEEEcC
Confidence 221111 123456444445532 233455666666555553 45555444
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.3e-06 Score=68.27 Aligned_cols=113 Identities=20% Similarity=0.260 Sum_probs=62.2
Q ss_pred HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHH-------HhCC-CCceEEEEee
Q 046623 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVE-------ANGL-GGRVEVRELV 110 (218)
Q Consensus 41 ~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~-------~~~~-~~~~~~~~~d 110 (218)
.+...+......+++.++|||||.|.....++ ..+..+++|+|+.+ ....++...+ ..+. ...+++..+|
T Consensus 30 ~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 30 FVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 34444444434567899999999999888775 66777799999999 7666654332 2232 2457777888
Q ss_pred cCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 111 WGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 111 ~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
+.+...... .-...|+|++|+.++..+...++ .....-||+|.
T Consensus 110 fl~~~~~~~-~~s~AdvVf~Nn~~F~~~l~~~L-~~~~~~lk~G~ 152 (205)
T PF08123_consen 110 FLDPDFVKD-IWSDADVVFVNNTCFDPDLNLAL-AELLLELKPGA 152 (205)
T ss_dssp TTTHHHHHH-HGHC-SEEEE--TTT-HHHHHHH-HHHHTTS-TT-
T ss_pred ccccHhHhh-hhcCCCEEEEeccccCHHHHHHH-HHHHhcCCCCC
Confidence 765432110 12468999999888764444444 55555677765
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.4e-07 Score=69.91 Aligned_cols=99 Identities=23% Similarity=0.337 Sum_probs=62.4
Q ss_pred CCCeEEEECCCCC----HHHHHHHHh--C-C---CeEEEecCcc-hHHHHHHHHH-H---hC------------------
Q 046623 53 QNKSVLELGAGAG----LPGLTAARL--G-A---TRVVLTDVKP-LLPGLINNVE-A---NG------------------ 99 (218)
Q Consensus 53 ~~~~vLDlG~G~G----~~~~~l~~~--~-~---~~v~~~D~~~-~~~~a~~~~~-~---~~------------------ 99 (218)
+..+|+-.||++| .+++.+... + . .+++++|+|+ +++.|++-.- . .+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4568999999999 344444441 1 1 3899999999 9998865320 0 01
Q ss_pred -----CCCceEEEEeecCCCCccccccCCCCcEEEEcccccC--CcchHHHHHHHHHHhcCCC
Q 046623 100 -----LGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYD--PEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 100 -----~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~--~~~~~~~l~~~~~lL~~gG 155 (218)
+...+.|...|+.+... ..+.||+|+|.+++.+ .+....+++.+.+.|+|||
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~----~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG 169 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDP----PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGG 169 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S----------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEE
T ss_pred eEChHHcCceEEEecccCCCCc----ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCC
Confidence 11568888888877222 5678999999998854 4567889999999999999
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.1e-07 Score=69.32 Aligned_cols=95 Identities=11% Similarity=0.041 Sum_probs=74.2
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 54 NKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
...++||||+-|.+...+...+..+++.+|.|. +++.++.. +.+++. .....+|=+..+ ...+++|+|+++-
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i~--~~~~v~DEE~Ld----f~ens~DLiisSl 145 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSIE--TSYFVGDEEFLD----FKENSVDLIISSL 145 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCceE--EEEEecchhccc----ccccchhhhhhhh
Confidence 358999999999999999887888999999999 88876544 233322 233333322222 2678999999999
Q ss_pred cccCCcchHHHHHHHHHHhcCCC
Q 046623 133 VFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 133 ~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
.+|+..++...+..+...|||+|
T Consensus 146 slHW~NdLPg~m~~ck~~lKPDg 168 (325)
T KOG2940|consen 146 SLHWTNDLPGSMIQCKLALKPDG 168 (325)
T ss_pred hhhhhccCchHHHHHHHhcCCCc
Confidence 99999999999999999999999
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.9e-06 Score=63.85 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=78.8
Q ss_pred EEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccc
Q 046623 57 VLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVF 134 (218)
Q Consensus 57 vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~ 134 (218)
|+|+||-=|.+++.+.+.+. .+++++|+++ -++.|+++++..++.+++++..+|-..... +.+..|.|+...+=
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~----~~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK----PGEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG------GGG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC----CCCCCCEEEEecCC
Confidence 68999999999999988776 4799999999 999999999999999999999887443321 33447888874441
Q ss_pred cCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEE
Q 046623 135 YDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELT 188 (218)
Q Consensus 135 ~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~ 188 (218)
. .....+++.....++... .+++.. . ......-+++ .++||.+.+-.
T Consensus 77 G--~lI~~ILe~~~~~~~~~~-~lILqP-~--~~~~~LR~~L-~~~gf~I~~E~ 123 (205)
T PF04816_consen 77 G--ELIIEILEAGPEKLSSAK-RLILQP-N--THAYELRRWL-YENGFEIIDED 123 (205)
T ss_dssp H--HHHHHHHHHTGGGGTT---EEEEEE-S--S-HHHHHHHH-HHTTEEEEEEE
T ss_pred H--HHHHHHHHhhHHHhccCC-eEEEeC-C--CChHHHHHHH-HHCCCEEEEeE
Confidence 1 334555555554444322 344433 3 2344444444 99999998763
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-05 Score=65.69 Aligned_cols=145 Identities=13% Similarity=0.029 Sum_probs=91.7
Q ss_pred CeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhC--C-CCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 55 KSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANG--L-GGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
++||-||.|.|..+..+.+.. ..+++.+|+++ .++.+++.+.... . .++++++..|..+...+ ...+||+|+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~---~~~~fDvIi 154 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD---CEEKFDVII 154 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh---CCCcCCEEE
Confidence 699999999999999998876 46999999999 8999988876543 2 26778887665433211 234899999
Q ss_pred EcccccCCc-----chHHHHHHHHHHhcCCCceEEEEEeeccCCh----HHHHHHHHHhCCcEEEEE---EccCCCCCCC
Q 046623 130 MSDVFYDPE-----EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRT----GDCLHELIMSQGFRVIEL---TCQLGGGCPE 197 (218)
Q Consensus 130 ~~~~~~~~~-----~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~----~~~~~~~~~~~gf~~~~~---~~~~~~~~~~ 197 (218)
+. +.-... -...+.+.+.++|+++| +++......... ....+.+ ... |..... +++..++...
T Consensus 155 ~D-~tdp~gp~~~Lft~eFy~~~~~~L~~~G--i~v~q~~~~~~~~~~~~~~~~~~-~~v-f~~~~~~~~~ipt~~~g~~ 229 (282)
T COG0421 155 VD-STDPVGPAEALFTEEFYEGCRRALKEDG--IFVAQAGSPFLQDEEIALAYRNV-SRV-FSIVPPYVAPIPTYPSGFW 229 (282)
T ss_pred Ec-CCCCCCcccccCCHHHHHHHHHhcCCCc--EEEEecCCcccchHHHHHHHHHH-Hhh-ccccccceeccceecCCce
Confidence 83 221111 14889999999999999 333332221111 1222222 333 655544 4444444444
Q ss_pred ceeEEEecCC
Q 046623 198 AFAVYELIPP 207 (218)
Q Consensus 198 ~~~l~~~~~~ 207 (218)
.+.+.....+
T Consensus 230 ~f~~~s~~~~ 239 (282)
T COG0421 230 GFIVASFNKA 239 (282)
T ss_pred EEEEeecCCC
Confidence 5666554433
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.3e-05 Score=60.10 Aligned_cols=160 Identities=18% Similarity=0.152 Sum_probs=100.2
Q ss_pred cCCCCccccccc-cccchhHH-HHHHHHhc----CCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHH
Q 046623 21 VCDSVTGRPLTG-AWLWDSAL-ILAQFIST----HFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLI 92 (218)
Q Consensus 21 ~~~~~~~~~~~g-~~~w~~~~-~l~~~l~~----~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~ 92 (218)
||..---.+..+ |..|+.-. .|+..+.+ .+..++.+||-||+.+|+...+++.. +...+.++|.++ ....+.
T Consensus 38 VYGE~ii~~~~~eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl 117 (231)
T COG1889 38 VYGERIIKVEGEEYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL 117 (231)
T ss_pred ccCceeEEecCcceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH
Confidence 466533233444 77887433 56666555 34468899999999999999888743 445799999999 766665
Q ss_pred HHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEee-------c
Q 046623 93 NNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE-------V 165 (218)
Q Consensus 93 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~-------~ 165 (218)
..++.. .++--+..|......... .-+..|+|+. ++-. +++.+-+..++...|+++|.+++.+-.. .
T Consensus 118 ~~a~~R---~Ni~PIL~DA~~P~~Y~~-~Ve~VDviy~-DVAQ-p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp 191 (231)
T COG1889 118 DVAEKR---PNIIPILEDARKPEKYRH-LVEKVDVIYQ-DVAQ-PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADP 191 (231)
T ss_pred HHHHhC---CCceeeecccCCcHHhhh-hcccccEEEE-ecCC-chHHHHHHHHHHHhcccCCeEEEEEEeecccccCCH
Confidence 555443 345556666554432111 3367899987 4422 2445556677788999999544442211 1
Q ss_pred cCChHHHHHHHHHhCCcEEEEE
Q 046623 166 RTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 166 ~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+.-+.+....+ ++.+|++.++
T Consensus 192 ~~vf~~ev~kL-~~~~f~i~e~ 212 (231)
T COG1889 192 EEVFKDEVEKL-EEGGFEILEV 212 (231)
T ss_pred HHHHHHHHHHH-HhcCceeeEE
Confidence 11234455566 8889998776
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.7e-05 Score=63.13 Aligned_cols=108 Identities=16% Similarity=0.095 Sum_probs=82.2
Q ss_pred CCCeEEEECCCCCHHHHHHH-HhCC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 53 QNKSVLELGAGAGLPGLTAA-RLGA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~-~~~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
..-+||||.||.|---+.+. ..+. .++...|.++ .++..++.++..|+.+.+.|..+|..+..... ......|++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~-~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLA-ALDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhh-ccCCCCCEE
Confidence 45689999999997766653 4433 5899999999 99999999999999987899999987754211 134567999
Q ss_pred EEcccccCC---cchHHHHHHHHHHhcCCCceEEEEE
Q 046623 129 IMSDVFYDP---EEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 129 v~~~~~~~~---~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
+++-.+..- +.....+..+..++.||| .+|++.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG-~lIyTg 249 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGG-YLIYTG 249 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCc-EEEEcC
Confidence 987666433 235667888999999999 555544
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.9e-06 Score=68.30 Aligned_cols=106 Identities=14% Similarity=0.027 Sum_probs=73.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCC---CCceEEEEeecCCCCccccccCC-CCc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGL---GGRVEVRELVWGSDDLSQLSELG-EFD 126 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~-~~D 126 (218)
++++||=||.|.|.....+.+.. ..+++.+|+++ .++.+++.+..... .++++++..|....... ..+ +||
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~---~~~~~yD 152 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE---TQEEKYD 152 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT---SSST-EE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh---ccCCccc
Confidence 57899999999999999998775 46999999999 99999888765432 35788888765433221 233 899
Q ss_pred EEEEcccc--cCC--cchHHHHHHHHHHhcCCCceEEEE
Q 046623 127 MVIMSDVF--YDP--EEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 127 ~Iv~~~~~--~~~--~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+|++...- ... --..++++.+.++|+|+|.+++..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 99983221 111 113789999999999999444444
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00043 Score=54.21 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=93.1
Q ss_pred cccccchhHH-HHHHHHhc----CCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCC
Q 046623 31 TGAWLWDSAL-ILAQFIST----HFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGG 102 (218)
Q Consensus 31 ~g~~~w~~~~-~l~~~l~~----~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~ 102 (218)
..++.|+--. .|+..+.. .+..++.+||-||+.+|+.-.+++.. + ...|.++|.++ ....+....+.. .
T Consensus 46 ~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~ 122 (229)
T PF01269_consen 46 VEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---P 122 (229)
T ss_dssp EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---T
T ss_pred cceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---C
Confidence 4777887433 56666655 33467889999999999999988743 3 35899999999 776666555443 4
Q ss_pred ceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeec----cC---ChHHHHHH
Q 046623 103 RVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV----RT---RTGDCLHE 175 (218)
Q Consensus 103 ~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~----~~---~~~~~~~~ 175 (218)
++--+..|......... .-+.+|+|++ ++- .+++.+-++.++...||+||.+++.+-... .. -..+....
T Consensus 123 NIiPIl~DAr~P~~Y~~-lv~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~ 199 (229)
T PF01269_consen 123 NIIPILEDARHPEKYRM-LVEMVDVIFQ-DVA-QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKK 199 (229)
T ss_dssp TEEEEES-TTSGGGGTT-TS--EEEEEE-E-S-STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHH
T ss_pred ceeeeeccCCChHHhhc-ccccccEEEe-cCC-ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHH
Confidence 46666667654432221 3458999998 453 235566677788889999995555543211 11 13444556
Q ss_pred HHHhCCcEEEEE
Q 046623 176 LIMSQGFRVIEL 187 (218)
Q Consensus 176 ~~~~~gf~~~~~ 187 (218)
+ ++.+|++.+.
T Consensus 200 L-~~~~~~~~e~ 210 (229)
T PF01269_consen 200 L-KEEGFKPLEQ 210 (229)
T ss_dssp H-HCTTCEEEEE
T ss_pred H-HHcCCChheE
Confidence 5 7779998776
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.3e-05 Score=59.50 Aligned_cols=134 Identities=17% Similarity=0.135 Sum_probs=90.5
Q ss_pred hhHHHHHHHHhcCCC-----CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeec
Q 046623 37 DSALILAQFISTHFD-----FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVW 111 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~-----~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 111 (218)
|++..+.+|+..... ....++||+||=+.... +...+.-.|+.+|.+++- ..+...|+
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~--~s~~~~fdvt~IDLns~~---------------~~I~qqDF 92 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNA--CSTSGWFDVTRIDLNSQH---------------PGILQQDF 92 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCc--ccccCceeeEEeecCCCC---------------CCceeecc
Confidence 788999999877221 12369999999643322 223344579999987521 22344444
Q ss_pred CCCCccccccCCCCcEEEEcccccCCc---chHHHHHHHHHHhcCCCc-----eEEEEE----eeccCChHHHHHHHHHh
Q 046623 112 GSDDLSQLSELGEFDMVIMSDVFYDPE---EMVGLGKTLKRVCGTGRH-----TVVWAV----SEVRTRTGDCLHELIMS 179 (218)
Q Consensus 112 ~~~~~~~~~~~~~~D~Iv~~~~~~~~~---~~~~~l~~~~~lL~~gG~-----~~i~~~----~~~~~~~~~~~~~~~~~ 179 (218)
-+.+... .+.++||+|.++-++...+ ..-+++..+.+.|+|+|. +++++. ...|....+.+..+|..
T Consensus 93 m~rplp~-~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~ 171 (219)
T PF11968_consen 93 MERPLPK-NESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMES 171 (219)
T ss_pred ccCCCCC-CcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHh
Confidence 4433211 1467899999988886644 467799999999999996 555532 23466677888888899
Q ss_pred CCcEEEEEE
Q 046623 180 QGFRVIELT 188 (218)
Q Consensus 180 ~gf~~~~~~ 188 (218)
.||...+..
T Consensus 172 LGf~~~~~~ 180 (219)
T PF11968_consen 172 LGFTRVKYK 180 (219)
T ss_pred CCcEEEEEE
Confidence 999988873
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.6e-05 Score=66.07 Aligned_cols=102 Identities=20% Similarity=0.155 Sum_probs=72.7
Q ss_pred hhHHHHHHHHhcCC--------CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEE
Q 046623 37 DSALILAQFISTHF--------DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRE 108 (218)
Q Consensus 37 ~~~~~l~~~l~~~~--------~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~ 108 (218)
.++..|.+.+.... ..++.++|||||++|.++..+.+.|. +|+++|..++......+ .++.+..
T Consensus 187 Rs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L~~~-------~~V~h~~ 258 (357)
T PRK11760 187 RSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSLMDT-------GQVEHLR 258 (357)
T ss_pred hHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhhhCC-------CCEEEEe
Confidence 46666666654411 25788999999999999999999988 99999977643333221 5587877
Q ss_pred eecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCC
Q 046623 109 LVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTG 154 (218)
Q Consensus 109 ~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~g 154 (218)
.|-..... ....+|.+++.-+ ..+..+.+.+.+++..|
T Consensus 259 ~d~fr~~p----~~~~vDwvVcDmv----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 259 ADGFKFRP----PRKNVDWLVCDMV----EKPARVAELMAQWLVNG 296 (357)
T ss_pred ccCcccCC----CCCCCCEEEEecc----cCHHHHHHHHHHHHhcC
Confidence 76554432 2578999999433 45677778888888765
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.2e-05 Score=61.90 Aligned_cols=91 Identities=13% Similarity=0.009 Sum_probs=68.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhC---CCCceEEEEeecCCCCccccccCCCCcE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANG---LGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
...++||=+|.|-|.....+.+... +|+.+|+++ .++.+++.+.... -.++++++. +... ...++||+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~~-----~~~~~fDV 142 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--QLLD-----LDIKKYDL 142 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--hhhh-----ccCCcCCE
Confidence 4568999999999999999999875 999999999 9988888554321 125566654 1110 02368999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
|++. ..+ ...+.+.+.+.|+|||
T Consensus 143 IIvD-s~~----~~~fy~~~~~~L~~~G 165 (262)
T PRK00536 143 IICL-QEP----DIHKIDGLKRMLKEDG 165 (262)
T ss_pred EEEc-CCC----ChHHHHHHHHhcCCCc
Confidence 9984 322 2678899999999999
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.5e-06 Score=67.79 Aligned_cols=138 Identities=17% Similarity=0.153 Sum_probs=85.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC---------------------------C
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG---------------------------G 102 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~---------------------------~ 102 (218)
..++.++||+|||+-......+..-..+++..|..+ ..+.+++.++..+.- .
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 457789999999985554333433356899999998 877777666543210 1
Q ss_pred -ceEEEEeecCCCCcccc--ccCCCCcEEEEcccccC----CcchHHHHHHHHHHhcCCCceEEEEEeec----------
Q 046623 103 -RVEVRELVWGSDDLSQL--SELGEFDMVIMSDVFYD----PEEMVGLGKTLKRVCGTGRHTVVWAVSEV---------- 165 (218)
Q Consensus 103 -~~~~~~~d~~~~~~~~~--~~~~~~D~Iv~~~~~~~----~~~~~~~l~~~~~lL~~gG~~~i~~~~~~---------- 165 (218)
.-.++.+|+.+..+-.. ....+||+|++.-++.. .+.+...++.+.++|||||.+++...-..
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F 213 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKF 213 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEec
Confidence 12577788876653211 01235999998777643 35677888889999999995544422111
Q ss_pred --cCChHHHHHHHHHhCCcEEEEEE
Q 046623 166 --RTRTGDCLHELIMSQGFRVIELT 188 (218)
Q Consensus 166 --~~~~~~~~~~~~~~~gf~~~~~~ 188 (218)
-...++.+...+++.||.+....
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ccccCCHHHHHHHHHHcCCEEEecc
Confidence 12366777777799999998876
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=98.14 E-value=3e-06 Score=72.10 Aligned_cols=106 Identities=23% Similarity=0.295 Sum_probs=75.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCC-ceEEEEeecCCCCccccccCCCCcEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGG-RVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
++.++||.-||+|.-++..++. +..+|++-|+|+ +++.+++|++.|++.. .+++...|...... .....||+|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~---~~~~~fD~I 125 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY---SRQERFDVI 125 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC---HSTT-EEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh---hccccCCEE
Confidence 3458999999999999987654 457999999999 9999999999999986 56776655433211 146789999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR 166 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~ 166 (218)
-. ||+.+ +.++++.+.+.++.|| ++.++++..+
T Consensus 126 Dl-DPfGS---p~pfldsA~~~v~~gG-ll~vTaTD~a 158 (377)
T PF02005_consen 126 DL-DPFGS---PAPFLDSALQAVKDGG-LLCVTATDTA 158 (377)
T ss_dssp EE---SS-----HHHHHHHHHHEEEEE-EEEEEE--HH
T ss_pred Ee-CCCCC---ccHhHHHHHHHhhcCC-EEEEeccccc
Confidence 99 78754 5899999999999998 6677666643
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.5e-05 Score=66.42 Aligned_cols=104 Identities=22% Similarity=0.230 Sum_probs=78.6
Q ss_pred CCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 54 NKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
..+|+|--||+|.-++..+ +.+..+++.-|+|| +++.++.|++.|...+ ..++..|....-. .....||+|-.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~---~~~~~fd~IDi- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLH---ELHRAFDVIDI- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHH---hcCCCccEEec-
Confidence 6799999999999999886 44445899999999 9999999999984332 4555444332211 13478999999
Q ss_pred ccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR 166 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~ 166 (218)
|||.+ +.++++.+.+.++.+| ++.++++...
T Consensus 128 DPFGS---PaPFlDaA~~s~~~~G-~l~vTATD~a 158 (380)
T COG1867 128 DPFGS---PAPFLDAALRSVRRGG-LLCVTATDTA 158 (380)
T ss_pred CCCCC---CchHHHHHHHHhhcCC-EEEEEecccc
Confidence 78754 5789999999999988 6666666643
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.5e-06 Score=71.60 Aligned_cols=127 Identities=16% Similarity=0.014 Sum_probs=72.6
Q ss_pred ccccchhHHHHHHHHhc-CCC-CCC---CeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEE
Q 046623 32 GAWLWDSALILAQFIST-HFD-FQN---KSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEV 106 (218)
Q Consensus 32 g~~~w~~~~~l~~~l~~-~~~-~~~---~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~ 106 (218)
|..+..++....+.|.+ .+. ..+ .++||+|||+|.++..+...+. -+..+-.+...+...+-+.+.|++.-+.+
T Consensus 91 gt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleRGvpa~~~~ 169 (506)
T PF03141_consen 91 GTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALERGVPAMIGV 169 (506)
T ss_pred CccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhcCcchhhhh
Confidence 44444555555555554 222 122 4799999999999999988766 23333332211111122223454422111
Q ss_pred EEeecCCCCccccccCCCCcEEEEcccccCC-cchHHHHHHHHHHhcCCCceEEEEEeecc
Q 046623 107 RELVWGSDDLSQLSELGEFDMVIMSDVFYDP-EEMVGLGKTLKRVCGTGRHTVVWAVSEVR 166 (218)
Q Consensus 107 ~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~-~~~~~~l~~~~~lL~~gG~~~i~~~~~~~ 166 (218)
. .-...+. +...||+|-++.+...+ ..-.-++-++.|+|+||| .+++..++.+
T Consensus 170 ~--~s~rLPf----p~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGG-yfv~S~ppv~ 223 (506)
T PF03141_consen 170 L--GSQRLPF----PSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGG-YFVLSGPPVY 223 (506)
T ss_pred h--ccccccC----CccchhhhhcccccccchhcccceeehhhhhhccCc-eEEecCCccc
Confidence 1 0122222 78899999998887543 223457888999999999 5555555544
|
; GO: 0008168 methyltransferase activity |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.2e-05 Score=66.09 Aligned_cols=88 Identities=13% Similarity=0.101 Sum_probs=61.7
Q ss_pred HHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhC--CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc
Q 046623 42 LAQFISTHFDFQNKSVLELGAGAGLPGLTAARLG--ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ 118 (218)
Q Consensus 42 l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~--~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (218)
+.+.+......++..+||.+||.|..+..+++.. ..+|+++|.++ +++.+++.+.. .+++.++..++.+.....
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHH
Confidence 3344443323467799999999999999998664 36899999999 99999988755 256888888776543211
Q ss_pred cccCCCCcEEEEcc
Q 046623 119 LSELGEFDMVIMSD 132 (218)
Q Consensus 119 ~~~~~~~D~Iv~~~ 132 (218)
.....++|.|+++.
T Consensus 85 ~~~~~~vDgIl~DL 98 (296)
T PRK00050 85 AEGLGKVDGILLDL 98 (296)
T ss_pred HcCCCccCEEEECC
Confidence 00112789988743
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.7e-05 Score=60.64 Aligned_cols=94 Identities=21% Similarity=0.207 Sum_probs=68.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++..|||+|+|.|.++..+++.+ .+++++|+++ .++.+++.+.. ..+++++..|+........ .......|++
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~---~~~~~vi~~D~l~~~~~~~-~~~~~~~vv~ 103 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS---NPNVEVINGDFLKWDLYDL-LKNQPLLVVG 103 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT---CSSEEEEES-TTTSCGGGH-CSSSEEEEEE
T ss_pred CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh---cccceeeecchhccccHHh-hcCCceEEEE
Confidence 478899999999999999999887 6999999999 98888887652 2569999999887664221 1235567778
Q ss_pred cccccCCcchHHHHHHHHHHhcC
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGT 153 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~ 153 (218)
|-|++ -..+++..+...-+.
T Consensus 104 NlPy~---is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 104 NLPYN---ISSPILRKLLELYRF 123 (262)
T ss_dssp EETGT---GHHHHHHHHHHHGGG
T ss_pred Eeccc---chHHHHHHHhhcccc
Confidence 76652 235666666654444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.7e-05 Score=61.47 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=77.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+||++|-|-|.....+.+.++.+-+.+|..+ .+++.+.+--... .++-+..+-|++..... ++..||-|.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek--~nViil~g~WeDvl~~L--~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK--ENVIILEGRWEDVLNTL--PDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc--cceEEEecchHhhhccc--cccCcceeEe
Confidence 57899999999999999999877776777889999 8888776643322 55778888887765422 5677999997
Q ss_pred cccc-cCCcchHHHHHHHHHHhcCCC
Q 046623 131 SDVF-YDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 131 ~~~~-~~~~~~~~~l~~~~~lL~~gG 155 (218)
+.+ .+-++...+.+.+.++|||+|
T Consensus 176 -DTy~e~yEdl~~~hqh~~rLLkP~g 200 (271)
T KOG1709|consen 176 -DTYSELYEDLRHFHQHVVRLLKPEG 200 (271)
T ss_pred -echhhHHHHHHHHHHHHhhhcCCCc
Confidence 444 334777888889999999999
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=2e-05 Score=62.81 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=60.1
Q ss_pred eEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh------C--CCCceEEEEeecCCCCccccccCCCCc
Q 046623 56 SVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN------G--LGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~------~--~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
+|||+.+|+|..++.++..|+ +|+++|.++ ....++.+++.. + +..+++++..|..+.... ....||
T Consensus 91 ~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~---~~~~fD 166 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD---ITPRPQ 166 (250)
T ss_pred EEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh---CCCCCc
Confidence 899999999999999999988 599999999 988899888774 2 224577777665443321 234799
Q ss_pred EEEEcccccCC
Q 046623 127 MVIMSDVFYDP 137 (218)
Q Consensus 127 ~Iv~~~~~~~~ 137 (218)
+|++.++|.+.
T Consensus 167 VVYlDPMfp~~ 177 (250)
T PRK10742 167 VVYLDPMFPHK 177 (250)
T ss_pred EEEECCCCCCC
Confidence 99997777654
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.2e-05 Score=57.54 Aligned_cols=58 Identities=33% Similarity=0.367 Sum_probs=49.0
Q ss_pred eEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 56 SVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
+++|+|||.|..+..+++.+. .+++++|.++ +.+.++++++.++..+ +.+....+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeCC
Confidence 489999999999999987765 3899999999 9999999999988754 78887766543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.9e-06 Score=66.77 Aligned_cols=109 Identities=20% Similarity=0.174 Sum_probs=85.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHH-------HHHHHHHHhCCC-CceEEEEeecCCCCccccccC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLP-------GLINNVEANGLG-GRVEVRELVWGSDDLSQLSEL 122 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~-------~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~ 122 (218)
.+|+.|.|-.-|||.+.+.++..|+ .|+|.|++- ++. ..+.|++..|.. .-+.+..+|..+..+. ..
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r---sn 282 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR---SN 282 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh---hc
Confidence 4688999999999999999999988 999999998 554 578899998854 3357778887776653 45
Q ss_pred CCCcEEEEcccccCCc---------------------------------chHHHHHHHHHHhcCCCceEEEEEee
Q 046623 123 GEFDMVIMSDVFYDPE---------------------------------EMVGLGKTLKRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~---------------------------------~~~~~l~~~~~lL~~gG~~~i~~~~~ 164 (218)
..||.|+|.+|+.-.+ ....++....+.|..||++++|..+.
T Consensus 283 ~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 283 LKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred ceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 6899999987764221 14567777888999999888886533
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.2e-05 Score=66.45 Aligned_cols=100 Identities=21% Similarity=0.203 Sum_probs=83.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++..++|+|||.|.+...++......+++++.++ .+..+.......++.+...++..|+..... ++..||.+.+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f----edn~fd~v~~ 184 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF----EDNTFDGVRF 184 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC----CccccCcEEE
Confidence 45668999999999999999988877999999998 776666665555565556666667666655 7789999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCC
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
.+..-+.++...+++++.+.++|||
T Consensus 185 ld~~~~~~~~~~~y~Ei~rv~kpGG 209 (364)
T KOG1269|consen 185 LEVVCHAPDLEKVYAEIYRVLKPGG 209 (364)
T ss_pred EeecccCCcHHHHHHHHhcccCCCc
Confidence 9998889999999999999999999
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.5e-05 Score=55.17 Aligned_cols=122 Identities=15% Similarity=0.135 Sum_probs=75.3
Q ss_pred eEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC---------cchHHHHHHH
Q 046623 78 RVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP---------EEMVGLGKTL 147 (218)
Q Consensus 78 ~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~---------~~~~~~l~~~ 147 (218)
+|.+.|+.+ |++..++.++..+..++++++..+=+... ...+.+++|.++.|--+-.. +..-+.++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~--~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLD--EYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGG--GT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHH--hhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 589999999 99999999999988888888875533322 11122589999987554322 2345677788
Q ss_pred HHHhcCCCceEEEEEeeccC------ChHHHHHHHHHhCCcEEEEEEccCCCCCCCceeEE
Q 046623 148 KRVCGTGRHTVVWAVSEVRT------RTGDCLHELIMSQGFRVIELTCQLGGGCPEAFAVY 202 (218)
Q Consensus 148 ~~lL~~gG~~~i~~~~~~~~------~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~l~ 202 (218)
.++|+|||.+.++++..... .+.++++.+ ....|.+.+.....+...|....+.
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L-~~~~~~V~~~~~~N~~~~pp~l~~i 138 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESEAVEEFLASL-DQKEFNVLKYQFINQKNNPPLLVII 138 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS--TTTEEEEEEEESS-SS---EEEEE
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhC-CcceEEEEEEEccCCCCCCCEEEEE
Confidence 88999999666666654332 233444444 5678998888777777666655443
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00026 Score=60.08 Aligned_cols=126 Identities=14% Similarity=0.052 Sum_probs=86.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHH--hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAAR--LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~--~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||..+..|.=+.++|. .....+++.|.+. -+...+.|+.+.|+.+ ..+...|....+. .. ..++||-|
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~-~~-~~~~fDRV 316 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPE-KE-FPGSFDRV 316 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccc-cc-cCccccee
Confidence 5788999999999976666543 2345899999999 9999999999999865 4455555443321 11 22389999
Q ss_pred EEcccccCC----------------------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhC
Q 046623 129 IMSDVFYDP----------------------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQ 180 (218)
Q Consensus 129 v~~~~~~~~----------------------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~ 180 (218)
++..|+.-. ....+++..+.+++++||.++.-+++..-..-+..+.+++.+.
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~ 390 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKR 390 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhC
Confidence 998887541 1156788888899999994443344444455666677764443
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00018 Score=52.83 Aligned_cols=91 Identities=16% Similarity=0.127 Sum_probs=60.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHH-----hCCCeEEEecCcc-hHHHHHHHHHHhC--CCCceEEEEeecCCCCccccccCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAAR-----LGATRVVLTDVKP-LLPGLINNVEANG--LGGRVEVRELVWGSDDLSQLSELG 123 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~-----~~~~~v~~~D~~~-~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~ 123 (218)
.+..+|+|+|||.|.++..++. ....+|+++|.++ ..+.+.+..+..+ ...+..+...+..+.. ...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 98 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-----SSD 98 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-----ccC
Confidence 4667999999999999999977 4456999999999 8888888887766 3334555544333221 245
Q ss_pred CCcEEEEcccccCCcchHHHHHHHHH
Q 046623 124 EFDMVIMSDVFYDPEEMVGLGKTLKR 149 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~~~~~~~l~~~~~ 149 (218)
..++++.-..+. .....+++...+
T Consensus 99 ~~~~~vgLHaCG--~Ls~~~l~~~~~ 122 (141)
T PF13679_consen 99 PPDILVGLHACG--DLSDRALRLFIR 122 (141)
T ss_pred CCeEEEEeeccc--chHHHHHHHHHH
Confidence 567777544432 223444444443
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.4e-05 Score=62.04 Aligned_cols=93 Identities=17% Similarity=0.100 Sum_probs=72.6
Q ss_pred CeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEccc
Q 046623 55 KSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDV 133 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~ 133 (218)
...+|+|+|.|..+..+... ..++-+++.+. .+..++++.. .| ++.+.+|..... .+-|+|++--+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~-------P~~daI~mkWi 245 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDT-------PKGDAIWMKWI 245 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC----cceecccccccC-------CCcCeEEEEee
Confidence 68999999999998888664 34788999887 6666666654 43 677777777653 34679999999
Q ss_pred ccCC--cchHHHHHHHHHHhcCCCceEEE
Q 046623 134 FYDP--EEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 134 ~~~~--~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+|++ ++..++++++.+.|+|+|.+++.
T Consensus 246 LhdwtDedcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 246 LHDWTDEDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred cccCChHHHHHHHHHHHHhCCCCCEEEEE
Confidence 9986 56899999999999999955444
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00018 Score=58.82 Aligned_cols=110 Identities=21% Similarity=0.189 Sum_probs=64.2
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCC
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
.+++.+.+|||+|||+|.-...+... ...+++++|.|+ +++.++.-+............ ........+....
T Consensus 29 ~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 103 (274)
T PF09243_consen 29 LPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-----RVLYRDFLPFPPD 103 (274)
T ss_pred CcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-----hhhhcccccCCCC
Confidence 45677889999999999766655322 345899999999 888777765443211111010 0000001123345
Q ss_pred cEEEEcccccCCcc--hHHHHHHHHHHhcCCCceEEEEEeecc
Q 046623 126 DMVIMSDVFYDPEE--MVGLGKTLKRVCGTGRHTVVWAVSEVR 166 (218)
Q Consensus 126 D~Iv~~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~~~~~~~ 166 (218)
|+|+++.++..... ...+++.+.+.+++ .++++....+
T Consensus 104 DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~---~LVlVEpGt~ 143 (274)
T PF09243_consen 104 DLVIASYVLNELPSAARAELVRSLWNKTAP---VLVLVEPGTP 143 (274)
T ss_pred cEEEEehhhhcCCchHHHHHHHHHHHhccC---cEEEEcCCCh
Confidence 99999988866544 44455555444443 4555554433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.2e-06 Score=66.07 Aligned_cols=100 Identities=19% Similarity=0.101 Sum_probs=78.2
Q ss_pred CCCeEEEECCCCCHHHH-HHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGL-TAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~-~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.+..|+|+.+|-|.+.+ ++..+|++.|+++|.+| +++.++.+++.|++.++..+..+|-.... +....|.|.+
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~-----~~~~AdrVnL 268 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK-----PRLRADRVNL 268 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC-----ccccchheee
Confidence 35789999999999999 67788999999999999 99999999999988777777766644433 5678899988
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
.-... .++-+-.+.++|+|.|.-++.+
T Consensus 269 GLlPS----se~~W~~A~k~Lk~eggsilHI 295 (351)
T KOG1227|consen 269 GLLPS----SEQGWPTAIKALKPEGGSILHI 295 (351)
T ss_pred ccccc----cccchHHHHHHhhhcCCcEEEE
Confidence 65533 3555666788899877534443
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0011 Score=51.85 Aligned_cols=141 Identities=14% Similarity=0.096 Sum_probs=93.2
Q ss_pred CCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 54 NKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
+.++.|+||-=+.+...+.+.+ +..+++.|+++ .++.|.+++..++..+++++..+|-..... ..+.+|+|+..
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~----~~d~~d~ivIA 92 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE----LEDEIDVIVIA 92 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC----ccCCcCEEEEe
Confidence 4459999999999999987554 46899999999 999999999999988888888777543322 55689999874
Q ss_pred ccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCCCCCCceeEEEecCC
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGGGCPEAFAVYELIPP 207 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (218)
.+= ......++++-..-|+.- ..+++ .+. ....+.-+++ ...+|.+..-.+..+ ....+.+..+.+.
T Consensus 93 GMG--G~lI~~ILee~~~~l~~~-~rlIL-QPn--~~~~~LR~~L-~~~~~~I~~E~ileE--~~kiYEIlv~e~~ 159 (226)
T COG2384 93 GMG--GTLIREILEEGKEKLKGV-ERLIL-QPN--IHTYELREWL-SANSYEIKAETILEE--DGKIYEILVVEKS 159 (226)
T ss_pred CCc--HHHHHHHHHHhhhhhcCc-ceEEE-CCC--CCHHHHHHHH-HhCCceeeeeeeecc--cCeEEEEEEEecC
Confidence 431 134556666666666532 12333 322 3344444555 889999876543333 2244444444433
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00028 Score=57.27 Aligned_cols=132 Identities=18% Similarity=0.161 Sum_probs=81.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC-----------------------------
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG----------------------------- 101 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~----------------------------- 101 (218)
..+.+||--|||.|.++-.+|+.|. .+.+.|.|- |+-.. ++..|+..
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s--~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLAS--NFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHH--HHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 3456899999999999999999987 899999998 64332 22222100
Q ss_pred ------------CceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeec----
Q 046623 102 ------------GRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV---- 165 (218)
Q Consensus 102 ------------~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~---- 165 (218)
.++....+|+...-... ...++||+|+..--+--....-++++.+.++||||| +.+...+.
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~-~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG--~WIN~GPLlyh~ 208 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYGPD-ENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG--YWINFGPLLYHF 208 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecCCc-ccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC--EEEecCCccccC
Confidence 11223333333222100 013689999975332223557889999999999999 33322221
Q ss_pred ----------cCChHHHHHHHHHhCCcEEEEEEc
Q 046623 166 ----------RTRTGDCLHELIMSQGFRVIELTC 189 (218)
Q Consensus 166 ----------~~~~~~~~~~~~~~~gf~~~~~~~ 189 (218)
-+...+.+..++...||++.+...
T Consensus 209 ~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 209 EPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 112334555555889999987643
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00033 Score=57.05 Aligned_cols=128 Identities=20% Similarity=0.195 Sum_probs=70.7
Q ss_pred CCeEEEECCCCCHHHH-HHHH-hC-CCeEEEecCcc-hHHHHHHHHH-HhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 54 NKSVLELGAGAGLPGL-TAAR-LG-ATRVVLTDVKP-LLPGLINNVE-ANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~-~l~~-~~-~~~v~~~D~~~-~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
+.+|+=||||+=.++. .+++ .+ ...++++|+++ +.+.+++... ..++..++.|+.+|..+... .-..||+|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~----dl~~~DvV 196 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY----DLKEYDVV 196 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G----G----SEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc----ccccCCEE
Confidence 4599999999775544 4453 33 24799999999 9999988877 45566779999888654432 34689999
Q ss_pred EEccccc-CCcchHHHHHHHHHHhcCCCceEEEEEee-ccCChHHHHHHHHHhCCcEEEEE
Q 046623 129 IMSDVFY-DPEEMVGLGKTLKRVCGTGRHTVVWAVSE-VRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 129 v~~~~~~-~~~~~~~~l~~~~~lL~~gG~~~i~~~~~-~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+...... ..+.-.++++.+.+.++||. .+++-+.. .|.......... .-.||.+..+
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga-~l~~Rsa~GlR~~LYp~vd~~-~l~gf~~~~~ 255 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGA-RLVVRSAHGLRSFLYPVVDPE-DLRGFEVLAV 255 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTS-EEEEEE--GGGGGSS----TG-GGTTEEEEEE
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCc-EEEEecchhhHHHcCCCCChH-HCCCeEEEEE
Confidence 9755443 23577899999999999998 44443332 344333333332 2348888766
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00017 Score=51.29 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=56.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
+.++++|+|+|++.|..++.++..|+++|++++.++ ..+..+.|.+.+.+-+.. +...+|.. .-+.||+.+
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~-v~~~eW~~-------~Y~~~Di~~ 97 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKA-VMKGEWNG-------EYEDVDIFV 97 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeece-eecccccc-------cCCCcceEE
Confidence 478999999999999999999999999999999999 999999999888654322 22223432 236788888
Q ss_pred E
Q 046623 130 M 130 (218)
Q Consensus 130 ~ 130 (218)
+
T Consensus 98 i 98 (156)
T PHA01634 98 M 98 (156)
T ss_pred E
Confidence 7
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00085 Score=48.45 Aligned_cols=97 Identities=31% Similarity=0.310 Sum_probs=61.8
Q ss_pred EEEECCCCCHHHHHHHHhCC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC--CccccccC-CCCcEEEE
Q 046623 57 VLELGAGAGLPGLTAARLGA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD--DLSQLSEL-GEFDMVIM 130 (218)
Q Consensus 57 vLDlG~G~G~~~~~l~~~~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~~D~Iv~ 130 (218)
++|+|||+|... .+..... ..++++|.++ ++..+......... ..+.+...|.... .. .. ..+|++..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~d~~~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPF----EDSASFDLVIS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCC----CCCCceeEEee
Confidence 999999999876 4433322 3788899999 77774444322111 1146666665542 21 22 47999944
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
....+... ....+..+.+.++|+|.+++.
T Consensus 126 ~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~ 154 (257)
T COG0500 126 LLVLHLLP-PAKALRELLRVLKPGGRLVLS 154 (257)
T ss_pred eeehhcCC-HHHHHHHHHHhcCCCcEEEEE
Confidence 44443333 788999999999999944433
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00094 Score=52.52 Aligned_cols=96 Identities=20% Similarity=0.267 Sum_probs=59.6
Q ss_pred HHHHHHhc-CCC--CCCCeEEEECCCCCHH--HHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh-CCCCceEEEEeecCC
Q 046623 41 ILAQFIST-HFD--FQNKSVLELGAGAGLP--GLTAARLGATRVVLTDVKP-LLPGLINNVEAN-GLGGRVEVRELVWGS 113 (218)
Q Consensus 41 ~l~~~l~~-~~~--~~~~~vLDlG~G~G~~--~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~-~~~~~~~~~~~d~~~ 113 (218)
.+++++.. ... .++.++||||.|.-.+ .+-...+|- +.++.|+++ +++.|+.++..| ++...+....-.=.+
T Consensus 63 ~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~ 141 (292)
T COG3129 63 HLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSD 141 (292)
T ss_pred HHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcc
Confidence 34555544 222 3456899999885422 222334544 899999999 999999999988 665545554321111
Q ss_pred CCcc-ccccCCCCcEEEEcccccCC
Q 046623 114 DDLS-QLSELGEFDMVIMSDVFYDP 137 (218)
Q Consensus 114 ~~~~-~~~~~~~~D~Iv~~~~~~~~ 137 (218)
.... .....+.||...||+|||..
T Consensus 142 ~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 142 AIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred ccccccccccceeeeEecCCCcchh
Confidence 1111 11135789999999999854
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=4e-05 Score=59.11 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=74.4
Q ss_pred cccccchhHHHHHHHHhcCCC--CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEE
Q 046623 31 TGAWLWDSALILAQFISTHFD--FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVR 107 (218)
Q Consensus 31 ~g~~~w~~~~~l~~~l~~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~ 107 (218)
..+++.+-.++-.-+....+. ..+.++||+|+|.|-.+..++.. ..+|.++|.|. +..+.++. + ..+.
T Consensus 88 GsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~----ynVl 158 (288)
T KOG3987|consen 88 GSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----N----YNVL 158 (288)
T ss_pred CceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----C----Ccee
Confidence 344444444433333333233 45679999999999999888654 34789999988 77665432 1 1111
Q ss_pred -EeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcC-CCceEEE
Q 046623 108 -ELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGT-GRHTVVW 160 (218)
Q Consensus 108 -~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~-gG~~~i~ 160 (218)
..+|.+ ..-++|+|.|-+.+....++-++++.+...++| +|++++-
T Consensus 159 ~~~ew~~-------t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 159 TEIEWLQ-------TDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred eehhhhh-------cCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 122322 234699999988876667889999999999999 7755543
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00016 Score=61.58 Aligned_cols=100 Identities=20% Similarity=0.255 Sum_probs=70.2
Q ss_pred eEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccc
Q 046623 56 SVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVF 134 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~ 134 (218)
.|||||+|+|.++..+++.|+.+|+++|.=. +...|++....|++++.++++.- ....-.+.+..+.|+++.-..-
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk---rStev~vg~~~RadI~v~e~fd 145 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINK---RSTEVKVGGSSRADIAVREDFD 145 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecc---ccceeeecCcchhhhhhHhhhh
Confidence 5999999999999999999998999999888 99999999999999988888852 1111111123447777752221
Q ss_pred c---CCcchHHHHHHHHHHhcCCCceE
Q 046623 135 Y---DPEEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 135 ~---~~~~~~~~l~~~~~lL~~gG~~~ 158 (218)
- -...+..+-.....++++|...+
T Consensus 146 tEligeGalps~qhAh~~L~~~nc~~V 172 (636)
T KOG1501|consen 146 TELIGEGALPSLQHAHDMLLVDNCKTV 172 (636)
T ss_pred hhhhccccchhHHHHHHHhcccCCeec
Confidence 1 11234555555666777776433
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0016 Score=53.34 Aligned_cols=137 Identities=14% Similarity=0.005 Sum_probs=82.0
Q ss_pred eEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccc
Q 046623 56 SVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVF 134 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~ 134 (218)
+++|+.||.|.++..+...|...+.++|+++ +++..+.|.... +...|+.+...... ...+|++++++|+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~--~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDF--IPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhc--CCCCCEEEeCCCC
Confidence 6899999999999999888887789999999 998888876321 34455554432111 3569999999988
Q ss_pred cCC----------cchHHHHHHHHHH---hcCCCceEEEEEeec------cCChHHHHHHHHHhCCcEEEEEEcc----C
Q 046623 135 YDP----------EEMVGLGKTLKRV---CGTGRHTVVWAVSEV------RTRTGDCLHELIMSQGFRVIELTCQ----L 191 (218)
Q Consensus 135 ~~~----------~~~~~~l~~~~~l---L~~gG~~~i~~~~~~------~~~~~~~~~~~~~~~gf~~~~~~~~----~ 191 (218)
... +....++....++ ++|. .+++-.... ..........+ ++.|+.+...-+. -
T Consensus 73 q~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~~~~~~~~~~i~~~l-~~~GY~~~~~~l~a~~~G 149 (275)
T cd00315 73 QPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLTHDNGNTLKVILNTL-EELGYNVYWKLLNASDYG 149 (275)
T ss_pred hhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhccCchHHHHHHHHHH-HhCCcEEEEEEEEHHHcC
Confidence 521 1223344444333 3552 333321111 11234444555 8889887655222 2
Q ss_pred CCCCCCceeEEEe
Q 046623 192 GGGCPEAFAVYEL 204 (218)
Q Consensus 192 ~~~~~~~~~l~~~ 204 (218)
-+..+++..++=.
T Consensus 150 vPQ~R~R~~~ia~ 162 (275)
T cd00315 150 VPQNRERVFIIGI 162 (275)
T ss_pred CCCCCcEEEEEEE
Confidence 3445555555433
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=3.8e-05 Score=61.96 Aligned_cols=125 Identities=20% Similarity=0.176 Sum_probs=82.2
Q ss_pred cCCCCccc-cccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh
Q 046623 21 VCDSVTGR-PLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN 98 (218)
Q Consensus 21 ~~~~~~~~-~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~ 98 (218)
+|+..... ..+.+..|+.. ..++... ..+..++|.|||.|-....- +...+++.|.+. .+.-+++-
T Consensus 17 IYd~ia~~fs~tr~~~Wp~v---~qfl~~~--~~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~~---- 84 (293)
T KOG1331|consen 17 IYDKIATHFSATRAAPWPMV---RQFLDSQ--PTGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKRS---- 84 (293)
T ss_pred HHHHhhhhccccccCccHHH---HHHHhcc--CCcceeeecccCCcccCcCC---CcceeeecchhhhhccccccC----
Confidence 44433333 33455567763 3444432 23779999999998543221 445789999887 55444322
Q ss_pred CCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC---cchHHHHHHHHHHhcCCCceEEEEEee
Q 046623 99 GLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP---EEMVGLGKTLKRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 99 ~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~---~~~~~~l~~~~~lL~~gG~~~i~~~~~ 164 (218)
+.......|....+. ...+||.++...++||. .....++++..+.++|||..++++-..
T Consensus 85 ---~~~~~~~ad~l~~p~----~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 85 ---GGDNVCRADALKLPF----REESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred ---CCceeehhhhhcCCC----CCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 212456666666654 67899999998898885 457889999999999999877775433
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.49 E-value=8.1e-05 Score=64.22 Aligned_cols=107 Identities=21% Similarity=0.200 Sum_probs=81.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
++.+|||.-|++|.-++..++. +..++++.|.++ +++..+.|.+.|+..+.++....|....-...-.....||+|-
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 4568999999999999887643 446899999999 9999999999998877676666665422111111347899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEee
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~ 164 (218)
+ ||+.. ...+++.+.+.++.|| +++++++.
T Consensus 189 L-DPyGs---~s~FLDsAvqav~~gG-LL~vT~TD 218 (525)
T KOG1253|consen 189 L-DPYGS---PSPFLDSAVQAVRDGG-LLCVTCTD 218 (525)
T ss_pred c-CCCCC---ccHHHHHHHHHhhcCC-EEEEEecc
Confidence 9 77754 4789999999999999 55665555
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0018 Score=54.31 Aligned_cols=128 Identities=23% Similarity=0.132 Sum_probs=82.0
Q ss_pred CCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCC------CCceEEEEeecCCCCccccccCCCC
Q 046623 54 NKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGL------GGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
-.++|=+|.|.|.-..++.+++ ..+++.+|.+| +++.++.+.....+ ..+++++.-|..+... ...+.|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr---~a~~~f 366 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLR---TAADMF 366 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHH---hhcccc
Confidence 3589999999999999999887 57999999999 99998855432211 2567777655443221 134689
Q ss_pred cEEEEcccccCCc-----chHHHHHHHHHHhcCCCceEEEEEeecc--CChHHHHHHHHHhCCcEEE
Q 046623 126 DMVIMSDVFYDPE-----EMVGLGKTLKRVCGTGRHTVVWAVSEVR--TRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 126 D~Iv~~~~~~~~~-----~~~~~l~~~~~lL~~gG~~~i~~~~~~~--~~~~~~~~~~~~~~gf~~~ 185 (218)
|.|+..-+=-+.+ -..++-..+.+.|+++|.+++-...... ...-.....+ ++.|+...
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTi-k~AG~~~~ 432 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATI-KSAGYRVW 432 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHH-HhCcceee
Confidence 9999743311111 1366778889999999944333332211 1112223344 78887653
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.002 Score=49.12 Aligned_cols=133 Identities=13% Similarity=0.013 Sum_probs=74.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHH-h-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEe-ecCCCCccc----cccCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAAR-L-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVREL-VWGSDDLSQ----LSELG 123 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~-~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~----~~~~~ 123 (218)
.++.+|||+||.+|.++..+.+ . +...|.++|+-. .... .+.++.+ |+.+..... ..+..
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~------------Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPE------------GATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCC------------CcccccccccCCHHHHHHHHHhCCCC
Confidence 4688999999999999998853 3 446899999755 2111 1233333 544443221 12456
Q ss_pred CCcEEEEcccccCC-----cc-------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE--Ec
Q 046623 124 EFDMVIMSDVFYDP-----EE-------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL--TC 189 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~-----~~-------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~--~~ 189 (218)
..|+|++ ++..+. -+ ..+.+......++|+|.+++-+... .....+.+.+ ..-|...+. |.
T Consensus 136 ~VdvVlS-DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g--~e~~~l~r~l--~~~f~~Vk~vKP~ 210 (232)
T KOG4589|consen 136 PVDVVLS-DMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG--SEEALLQRRL--QAVFTNVKKVKPD 210 (232)
T ss_pred cccEEEe-ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC--CchHHHHHHH--HHHhhhcEeeCCc
Confidence 7899987 444332 12 2333444455678999444443333 4444444444 344554444 55
Q ss_pred cCCCCCCCceeE
Q 046623 190 QLGGGCPEAFAV 201 (218)
Q Consensus 190 ~~~~~~~~~~~l 201 (218)
-.+....+.+.+
T Consensus 211 Asr~eS~E~y~v 222 (232)
T KOG4589|consen 211 ASRDESAETYLV 222 (232)
T ss_pred cccccccceeee
Confidence 555455555444
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0024 Score=53.35 Aligned_cols=106 Identities=9% Similarity=0.040 Sum_probs=66.0
Q ss_pred CCCeEEEECCCCCHHHHHH----HHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEE--EEeecCCCCc--cccccC
Q 046623 53 QNKSVLELGAGAGLPGLTA----ARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEV--RELVWGSDDL--SQLSEL 122 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l----~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~--~~~d~~~~~~--~~~~~~ 122 (218)
++..++|+|||+|.-...+ .+.+ ...++++|+|. +++.+..++.....+ .+.+ +.+|+.+... ......
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p-~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS-HVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC-CeEEEEEEecHHHHHhhccccccc
Confidence 4568999999999654433 1121 24799999999 999999988733332 2444 6666654321 000011
Q ss_pred CCCcEEE-EcccccCC--cchHHHHHHHHH-HhcCCCceEE
Q 046623 123 GEFDMVI-MSDVFYDP--EEMVGLGKTLKR-VCGTGRHTVV 159 (218)
Q Consensus 123 ~~~D~Iv-~~~~~~~~--~~~~~~l~~~~~-lL~~gG~~~i 159 (218)
....+++ ....+.+. .....+++.+++ .|+||+.+++
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 2345555 45566653 456688899998 9999994443
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.38 E-value=1.8e-05 Score=55.08 Aligned_cols=95 Identities=20% Similarity=0.122 Sum_probs=38.6
Q ss_pred EEECCCCCHHHHHHHHh----CCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEccc
Q 046623 58 LELGAGAGLPGLTAARL----GATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDV 133 (218)
Q Consensus 58 LDlG~G~G~~~~~l~~~----~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~ 133 (218)
||+|+..|..+..+++. +..+++++|..+..+...+.++..+...+++++.++..+... .. ..+++|+++....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~-~~-~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLP-SL-PDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHH-HH-HH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHH-Hc-CCCCEEEEEECCC
Confidence 69999999887776432 223799999887544455555555565678999877643321 11 2478999999543
Q ss_pred ccCCcchHHHHHHHHHHhcCCC
Q 046623 134 FYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 134 ~~~~~~~~~~l~~~~~lL~~gG 155 (218)
|..+.....++.+.+.|+|||
T Consensus 79 -H~~~~~~~dl~~~~~~l~~gg 99 (106)
T PF13578_consen 79 -HSYEAVLRDLENALPRLAPGG 99 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEE
T ss_pred -CCHHHHHHHHHHHHHHcCCCe
Confidence 333556667788888999999
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.011 Score=52.42 Aligned_cols=127 Identities=16% Similarity=0.157 Sum_probs=84.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-C----CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-cccCCCC
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-G----ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-LSELGEF 125 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~----~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~ 125 (218)
+..+|+|..||+|.+.+...+. + ...+.|.|+++ ....++-|+-.+++...+....+|-...+... .....+|
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~ 265 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKF 265 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccce
Confidence 4559999999999887776432 1 24689999999 99999999999887632344444333222110 1134679
Q ss_pred cEEEEcccccCC-------------------------cchHHHHHHHHHHhcCCCceEEEEEeec--cCChHHHHHHHHH
Q 046623 126 DMVIMSDVFYDP-------------------------EEMVGLGKTLKRVCGTGRHTVVWAVSEV--RTRTGDCLHELIM 178 (218)
Q Consensus 126 D~Iv~~~~~~~~-------------------------~~~~~~l~~~~~lL~~gG~~~i~~~~~~--~~~~~~~~~~~~~ 178 (218)
|.|++++|+... ....+++..+...|+|+|+..+++.... +...+..++..+.
T Consensus 266 D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~ 345 (489)
T COG0286 266 DFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGVLFRGGAEKDIRKDLL 345 (489)
T ss_pred eEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCcCcCCCchHHHHHHHH
Confidence 999999998510 1126788888999999886666665553 3334555555544
Q ss_pred h
Q 046623 179 S 179 (218)
Q Consensus 179 ~ 179 (218)
+
T Consensus 346 ~ 346 (489)
T COG0286 346 E 346 (489)
T ss_pred h
Confidence 4
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0084 Score=49.84 Aligned_cols=136 Identities=16% Similarity=0.043 Sum_probs=80.1
Q ss_pred eEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccc
Q 046623 56 SVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVF 134 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~ 134 (218)
+++|+.||.|.+++.+.+.|...+.++|+++ +.+.-+.|+. .....|+........ +. .+|+++.++|+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l-~~-~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDL-PK-DVDLLIGGPPC 71 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHH-HH-T-SEEEEE---
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccc-cc-cceEEEeccCC
Confidence 6899999999999999998877899999999 9999888873 566667766554322 22 59999999988
Q ss_pred cCC----------cc----hHHHHHHHHHHhcCCCceEEEEEeec-cC-----ChHHHHHHHHHhCCcEEEEEE----cc
Q 046623 135 YDP----------EE----MVGLGKTLKRVCGTGRHTVVWAVSEV-RT-----RTGDCLHELIMSQGFRVIELT----CQ 190 (218)
Q Consensus 135 ~~~----------~~----~~~~l~~~~~lL~~gG~~~i~~~~~~-~~-----~~~~~~~~~~~~~gf~~~~~~----~~ 190 (218)
... +. ...+++.+ +.++|. .+++=.... .. .....++.+ .+.|+.+...- .+
T Consensus 72 Q~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~Pk--~~~~ENV~~l~~~~~~~~~~~i~~~l-~~lGY~v~~~vlna~~y 147 (335)
T PF00145_consen 72 QGFSIAGKRKGFDDPRNSLFFEFLRIV-KELKPK--YFLLENVPGLLSSKNGEVFKEILEEL-EELGYNVQWRVLNAADY 147 (335)
T ss_dssp TTTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS-S--EEEEEEEGGGGTGGGHHHHHHHHHHH-HHTTEEEEEEEEEGGGG
T ss_pred ceEeccccccccccccchhhHHHHHHH-hhccce--EEEecccceeeccccccccccccccc-cccceeehhccccHhhC
Confidence 531 11 22333333 356773 344432221 11 134444555 88898776542 22
Q ss_pred CCCCCCCceeEEEec
Q 046623 191 LGGGCPEAFAVYELI 205 (218)
Q Consensus 191 ~~~~~~~~~~l~~~~ 205 (218)
--+..+.+..+.=..
T Consensus 148 GvPQ~R~R~fivg~r 162 (335)
T PF00145_consen 148 GVPQNRERVFIVGIR 162 (335)
T ss_dssp TSSBE-EEEEEEEEE
T ss_pred CCCCceeeEEEEEEC
Confidence 333555555554433
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0012 Score=52.35 Aligned_cols=78 Identities=22% Similarity=0.213 Sum_probs=45.7
Q ss_pred CeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHH---HhCC-----CCceEEEEeecCCCCccccccCCCC
Q 046623 55 KSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVE---ANGL-----GGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~---~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
.+|||.-+|-|..++.++..|+ +|+++|.++ .....+.-++ ...- ..+++++.+|..+... .+..+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~---~~~~s~ 152 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR---QPDNSF 152 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC---CHSS--
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh---hcCCCC
Confidence 3899999999999999998886 899999999 5544443332 2211 1368889888665432 267899
Q ss_pred cEEEEcccccC
Q 046623 126 DMVIMSDVFYD 136 (218)
Q Consensus 126 D~Iv~~~~~~~ 136 (218)
|+|.+.++|.+
T Consensus 153 DVVY~DPMFp~ 163 (234)
T PF04445_consen 153 DVVYFDPMFPE 163 (234)
T ss_dssp SEEEE--S---
T ss_pred CEEEECCCCCC
Confidence 99999777654
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0016 Score=54.26 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=68.3
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCcc----ccccC
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLS----QLSEL 122 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~ 122 (218)
.+++...+|||+|.|.|.-..++... + ...++.++.|+++...-..+..+-.. ...||...... .....
T Consensus 109 ~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-----~~td~r~s~vt~dRl~lp~a 183 (484)
T COG5459 109 VPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-----EKTDWRASDVTEDRLSLPAA 183 (484)
T ss_pred CCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-----ccCCCCCCccchhccCCCcc
Confidence 56678889999999999876665322 1 24678888888887777777666332 22333332211 11244
Q ss_pred CCCcEEEEcccccC---CcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 123 GEFDMVIMSDVFYD---PEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~---~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
+.|+++++.+-+-+ .......++.+..+++||| +++++.
T Consensus 184 d~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg-~lVivE 225 (484)
T COG5459 184 DLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGG-HLVIVE 225 (484)
T ss_pred ceeehhhhhhhhccccCcchHHHHHHHHHHhccCCC-eEEEEe
Confidence 67788776655433 2344558888899999988 444433
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0016 Score=50.68 Aligned_cols=122 Identities=15% Similarity=0.138 Sum_probs=61.6
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHH----h-CCCeEEEecCcc-hHHHHHHHHHHhCCCCce
Q 046623 31 TGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAAR----L-GATRVVLTDVKP-LLPGLINNVEANGLGGRV 104 (218)
Q Consensus 31 ~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~----~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~ 104 (218)
=|..++...+.+..+-.-....+++.|+|+|.-.|..++..|. . +.++|+++|++- ..... ..+...+..++
T Consensus 10 ~G~pi~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~~rI 87 (206)
T PF04989_consen 10 LGRPIIQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMSPRI 87 (206)
T ss_dssp TTEEESS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTE
T ss_pred CCeehhcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccccCce
Confidence 3455555555555443222236788999999999988877643 2 346999999964 33221 12223334679
Q ss_pred EEEEeecCCCCcc-cccc---CCCCcEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 105 EVRELVWGSDDLS-QLSE---LGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 105 ~~~~~d~~~~~~~-~~~~---~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
+++.+|..+...- ++.. .....+|+. +.-|..+...+-++....++++|+
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVil-Ds~H~~~hvl~eL~~y~plv~~G~ 141 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVIL-DSSHTHEHVLAELEAYAPLVSPGS 141 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEE-SS----SSHHHHHHHHHHT--TT-
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEE-CCCccHHHHHHHHHHhCccCCCCC
Confidence 9999987665421 1111 123334444 666666778888888999999998
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0013 Score=53.04 Aligned_cols=138 Identities=13% Similarity=0.110 Sum_probs=90.1
Q ss_pred HHhcCCCCCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccC
Q 046623 45 FISTHFDFQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSEL 122 (218)
Q Consensus 45 ~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 122 (218)
+|..-.++.++.|+=+| -.-..+++++..+ +.++..+|+++ .+....+.+++.|.. +++.+..|+.+..++. ..
T Consensus 144 lm~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~--~~ 219 (354)
T COG1568 144 LMYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPED--LK 219 (354)
T ss_pred eeccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcccChHH--HH
Confidence 34444556788899998 5556777776443 46899999999 999999999988875 3888888887766533 34
Q ss_pred CCCcEEEEcccccCCcchHHHHHHHHHHhcCCCce-EEEEEeec--cCChHHHHHHHHHhCCcEEEEE
Q 046623 123 GEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHT-VVWAVSEV--RTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~-~i~~~~~~--~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
.+||+.+..+| +-.+....++..--..|+..|.. .+.++... ...-.+..+.++.+.||.+.++
T Consensus 220 ~kFDvfiTDPp-eTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvVITdi 286 (354)
T COG1568 220 RKFDVFITDPP-ETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVVITDI 286 (354)
T ss_pred hhCCeeecCch-hhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCeeeHhh
Confidence 78999998544 34455566665555566654211 33333221 1122344444667888888765
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0083 Score=47.99 Aligned_cols=127 Identities=18% Similarity=0.114 Sum_probs=75.3
Q ss_pred CCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
...+|+|||||.=.+++... ..+...+++.|++. +++.....+...+.. .++...|..... +....|+.++
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~-----~~~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP-----PKEPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH-----TTSEESEEEE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC-----CCCCcchhhH
Confidence 36799999999988888764 33335999999999 999999988888865 666766765543 5677999997
Q ss_pred cccccCCc--chHHHHHHHHHHhcCCCceEEEEEeeccC----------ChHHHHHHHHHhCCcEEEEEEcc
Q 046623 131 SDVFYDPE--EMVGLGKTLKRVCGTGRHTVVWAVSEVRT----------RTGDCLHELIMSQGFRVIELTCQ 190 (218)
Q Consensus 131 ~~~~~~~~--~~~~~l~~~~~lL~~gG~~~i~~~~~~~~----------~~~~~~~~~~~~~gf~~~~~~~~ 190 (218)
--.++..+ ....-++.+..+=.| .++++.+.+. .....++......++.+.+..+.
T Consensus 178 lK~lp~le~q~~g~g~~ll~~~~~~----~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~~~~ 245 (251)
T PF07091_consen 178 LKTLPCLERQRRGAGLELLDALRSP----HVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRLTFG 245 (251)
T ss_dssp ET-HHHHHHHSTTHHHHHHHHSCES----EEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEEEET
T ss_pred HHHHHHHHHHhcchHHHHHHHhCCC----eEEEeccccccccCccccccCHHHHHHHhcccCCceeeeeecc
Confidence 54443321 112223333333233 3333444332 23344555546777777666443
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0021 Score=52.94 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=46.4
Q ss_pred HHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHH
Q 046623 40 LILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEA 97 (218)
Q Consensus 40 ~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~ 97 (218)
..|.+.+......+|+.|||..+|+|+.++++.+.+. +.+|+|+++ .++.+++++..
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 3444444444446899999999999999999988875 899999999 99999988754
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0012 Score=51.86 Aligned_cols=59 Identities=17% Similarity=0.121 Sum_probs=41.4
Q ss_pred ccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHH
Q 046623 34 WLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLIN 93 (218)
Q Consensus 34 ~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~ 93 (218)
|...-...|.+.+......++..|||..||+|+.+.++.+.+. +.+++|+++ .++.|++
T Consensus 172 h~~~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 172 HPTQKPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred eeecCCHHHHHHHHHhhhccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 4444455555555553446789999999999999999998876 899999999 8888764
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0047 Score=51.13 Aligned_cols=88 Identities=13% Similarity=0.045 Sum_probs=60.4
Q ss_pred HHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc
Q 046623 42 LAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL 119 (218)
Q Consensus 42 l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (218)
+.+.+......++..++|.-+|.|..+..+++. +..+|+++|.++ ++..+++.++..+ .++.++..++.+......
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~--~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE--GRVVLIHDNFANFFEHLD 86 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC--CcEEEEeCCHHHHHHHHH
Confidence 333443322346779999999999999998754 346999999999 9999999886543 568888776654321100
Q ss_pred -ccCCCCcEEEEc
Q 046623 120 -SELGEFDMVIMS 131 (218)
Q Consensus 120 -~~~~~~D~Iv~~ 131 (218)
....++|.|+++
T Consensus 87 ~~~~~~vDgIl~D 99 (305)
T TIGR00006 87 ELLVTKIDGILVD 99 (305)
T ss_pred hcCCCcccEEEEe
Confidence 122468888864
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.031 Score=45.88 Aligned_cols=69 Identities=14% Similarity=0.106 Sum_probs=51.3
Q ss_pred HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeec
Q 046623 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVW 111 (218)
Q Consensus 41 ~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~ 111 (218)
.+.+.+......++...+|.--|.|..+..+..... ++++++|.++ +++.+++.+..++ .++.++...+
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F 82 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNF 82 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcH
Confidence 344444443335678999999999999998865432 5799999999 9999999987765 4566666543
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.006 Score=44.76 Aligned_cols=95 Identities=21% Similarity=0.220 Sum_probs=64.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.+..+.+|+|+|.|.+-+.+++.|....+++|.++ .+...+-..-+.++..+..|..-|+..... ..|..++.
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl------~dy~~vvi 144 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL------RDYRNVVI 144 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc------cccceEEE
Confidence 34568999999999999999999877899999999 888877777777777777887766655433 22333333
Q ss_pred cccccCCcchHHHHHHHHHHhcCCC
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
... ...+..+-..+..-+..+.
T Consensus 145 Fga---es~m~dLe~KL~~E~p~nt 166 (199)
T KOG4058|consen 145 FGA---ESVMPDLEDKLRTELPANT 166 (199)
T ss_pred eeh---HHHHhhhHHHHHhhCcCCC
Confidence 122 2333444455554555554
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.02 Score=47.89 Aligned_cols=132 Identities=14% Similarity=-0.001 Sum_probs=77.9
Q ss_pred EEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEccccc
Q 046623 57 VLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFY 135 (218)
Q Consensus 57 vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~ 135 (218)
|+|+.||.|.++..+...|..-+.++|+++ +++.-+.|+.. .+...|+.+.... ....+|+++.++|+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~---~~~~~dvl~gg~PCq 70 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPS---DIPDFDILLGGFPCQ 70 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhh---hCCCcCEEEecCCCc
Confidence 689999999999999888875577899999 88888877632 2233455544321 123589999988874
Q ss_pred CC----------cchHHHHHHHHHHh---cCCCceEEEEEeec-------cCChHHHHHHHHHhCCcEEEEE----EccC
Q 046623 136 DP----------EEMVGLGKTLKRVC---GTGRHTVVWAVSEV-------RTRTGDCLHELIMSQGFRVIEL----TCQL 191 (218)
Q Consensus 136 ~~----------~~~~~~l~~~~~lL---~~gG~~~i~~~~~~-------~~~~~~~~~~~~~~~gf~~~~~----~~~~ 191 (218)
.. +....++....+++ +|. .+++ .... .......+..+ ++.|+.+... .-+-
T Consensus 71 ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~-ENV~~l~~~~~~~~~~~i~~~l-~~~GY~v~~~~l~a~dyG 146 (315)
T TIGR00675 71 PFSIAGKRKGFEDTRGTLFFEIVRILKEKKPK--FFLL-ENVKGLVSHDKGRTFKVIIETL-EELGYKVYYKVLNAKDFG 146 (315)
T ss_pred ccchhcccCCCCCchhhHHHHHHHHHhhcCCC--EEEe-eccHHHHhcccchHHHHHHHHH-HhCCCEEEEEEEcHHHCC
Confidence 31 12234444444444 552 2333 2221 11233444555 7888887554 2222
Q ss_pred CCCCCCceeEE
Q 046623 192 GGGCPEAFAVY 202 (218)
Q Consensus 192 ~~~~~~~~~l~ 202 (218)
-+..+++..+.
T Consensus 147 vPQ~R~R~f~i 157 (315)
T TIGR00675 147 VPQNRERIYIV 157 (315)
T ss_pred CCCCccEEEEE
Confidence 33455555443
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.012 Score=45.63 Aligned_cols=109 Identities=12% Similarity=0.109 Sum_probs=65.8
Q ss_pred CCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCC------CceEEEEeecCCCCccccccCC-
Q 046623 53 QNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLG------GRVEVRELVWGSDDLSQLSELG- 123 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~- 123 (218)
+.-.+.|||||-|.+.+.++ +.+-.-+.|.|+.- ..+..++.+.+.+.. .++.+.......... +....+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp-n~f~kgq 138 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP-NFFEKGQ 138 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc-chhhhcc
Confidence 34579999999999999997 45555789999988 777777777665421 223333322221111 111112
Q ss_pred -CCcEEEEcccccCC------cchHHHHHHHHHHhcCCCceEEEEEee
Q 046623 124 -EFDMVIMSDVFYDP------EEMVGLGKTLKRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 124 -~~D~Iv~~~~~~~~------~~~~~~l~~~~~lL~~gG~~~i~~~~~ 164 (218)
+-+..+..+|.+.. --...++.+..-+|+.|| .++..+.
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg--~~ytitD 184 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGG--ILYTITD 184 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCc--eEEEEee
Confidence 33445554554321 113567788888999999 5555544
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0053 Score=48.84 Aligned_cols=58 Identities=21% Similarity=0.163 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh
Q 046623 40 LILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN 98 (218)
Q Consensus 40 ~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~ 98 (218)
..|.+.+.+....+++.|||..||+|..+..+.+.+. +.+++|+++ ..+.+.+++...
T Consensus 150 ~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 150 VTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 3444444443345788999999999999999988876 899999999 888888887653
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.017 Score=45.08 Aligned_cols=111 Identities=14% Similarity=0.005 Sum_probs=62.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C--CCeEEEecCcc-hHHHHHHHHHHh-----------------------------
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G--ATRVVLTDVKP-LLPGLINNVEAN----------------------------- 98 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~--~~~v~~~D~~~-~~~~a~~~~~~~----------------------------- 98 (218)
..+-++.|-.||+|.+...+... + ...|++.|+++ +++.|.+|+...
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 34568999999999887766422 2 25899999999 999999998643
Q ss_pred ------------CCCCceEEEEeecCCCCccccc-cCCCCcEEEEcccccCC---------cchHHHHHHHHHHhcCCCc
Q 046623 99 ------------GLGGRVEVRELVWGSDDLSQLS-ELGEFDMVIMSDVFYDP---------EEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 99 ------------~~~~~~~~~~~d~~~~~~~~~~-~~~~~D~Iv~~~~~~~~---------~~~~~~l~~~~~lL~~gG~ 156 (218)
|-.....+...|+.+....... .....|+|+..-|+.++ ....++++.+...| |+..
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vL-p~~s 208 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVL-PERS 208 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS--TT-
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhC-CCCc
Confidence 1011144555566553221111 22347999997776543 23577899999999 5443
Q ss_pred eEEEEEee
Q 046623 157 TVVWAVSE 164 (218)
Q Consensus 157 ~~i~~~~~ 164 (218)
++++ +..
T Consensus 209 VV~v-~~k 215 (246)
T PF11599_consen 209 VVAV-SDK 215 (246)
T ss_dssp EEEE-EES
T ss_pred EEEE-ecC
Confidence 4444 444
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.065 Score=42.80 Aligned_cols=126 Identities=21% Similarity=0.216 Sum_probs=95.1
Q ss_pred EEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccC
Q 046623 58 LELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYD 136 (218)
Q Consensus 58 LDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~ 136 (218)
|..-|||-.++..+.+.. .++.++|.-+ -....++|+... .++.+..+|-.........+.++=-+|++.+|+..
T Consensus 93 l~~YpGSP~lA~~llR~q-DRl~l~ELHp~D~~~L~~~f~~d---~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~ 168 (279)
T COG2961 93 LRYYPGSPLLARQLLREQ-DRLVLTELHPSDAPLLRNNFAGD---RRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFEL 168 (279)
T ss_pred cccCCCCHHHHHHHcchh-ceeeeeecCccHHHHHHHHhCCC---cceEEEecCcHHHHhhhCCCCCcceEEEeCCCccc
Confidence 888899877777776654 4899999999 888888888633 45777776643332222235667789999899888
Q ss_pred CcchHHHHHHHHHHhc--CCCceEEEEEeeccCChHHHHHHHHHhCCc-EEEEEE
Q 046623 137 PEEMVGLGKTLKRVCG--TGRHTVVWAVSEVRTRTGDCLHELIMSQGF-RVIELT 188 (218)
Q Consensus 137 ~~~~~~~l~~~~~lL~--~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf-~~~~~~ 188 (218)
..++..+++.+.+.++ ++|...||-....+.....+.+.+ +..+. ++.++.
T Consensus 169 ~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L-~~~~i~kiL~iE 222 (279)
T COG2961 169 KDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRAL-EALGIRKILQIE 222 (279)
T ss_pred ccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHH-hhcCccceeeeE
Confidence 8899999999988887 588888888888888888888888 87777 444443
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.078 Score=39.87 Aligned_cols=137 Identities=15% Similarity=0.218 Sum_probs=78.0
Q ss_pred hhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC
Q 046623 37 DSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD 115 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 115 (218)
++...|++.+.+.. ..+.+|+-|||=+-...+.-......+++..|.+. .... + .. .|..-|.....
T Consensus 10 ~T~~~l~~~l~~~~-~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~--------~--~~-~F~fyD~~~p~ 77 (162)
T PF10237_consen 10 ETAEFLARELLDGA-LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF--------G--GD-EFVFYDYNEPE 77 (162)
T ss_pred HHHHHHHHHHHHhc-CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc--------C--Cc-ceEECCCCChh
Confidence 45556666666521 24579999998553333333112345899999987 4322 1 12 34555554432
Q ss_pred ccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE-EccCC
Q 046623 116 LSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL-TCQLG 192 (218)
Q Consensus 116 ~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~-~~~~~ 192 (218)
.-.....+++|+|++.+|+...+-.......+..++++++ .+++++ . ...++.+.+++ ++..-.. |.+..
T Consensus 78 ~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~-kii~~T-g--~~~~~~~~~ll---~~~~~~f~p~h~~ 148 (162)
T PF10237_consen 78 ELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGG-KIILCT-G--EEMEELIKKLL---GLRMCDFQPEHPN 148 (162)
T ss_pred hhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccc-eEEEec-H--HHHHHHHHHHh---CeeEEeEEecccc
Confidence 1111125799999999998665556666677777778866 344433 2 23445555552 5555544 44443
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.09 Score=43.46 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=72.9
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCC--CCce--------------------------
Q 046623 54 NKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGL--GGRV-------------------------- 104 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~--~~~~-------------------------- 104 (218)
.-+||--|||.|.++..++..|. .+-+-|.|- ++-. ..+..|.. ++.+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~--S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLIC--SSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHH--HHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 45799999999999999998876 566666666 4422 12222110 0101
Q ss_pred -------------EEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeec------
Q 046623 105 -------------EVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV------ 165 (218)
Q Consensus 105 -------------~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~------ 165 (218)
..-.+|+.+.-.. -...+.||+|+..--+-.....-++++.+.++|+||| +.+...+.
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~-s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GG--vWiNlGPLlYHF~d 304 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGT-SSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGG--VWINLGPLLYHFED 304 (369)
T ss_pred ccccccCCCCCCccccccceeEEecC-cCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCc--EEEeccceeeeccC
Confidence 1111222111100 0012469999875333333557788899999999999 32211110
Q ss_pred ---------cCChHHHHHHHHHhCCcEEEEE
Q 046623 166 ---------RTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 166 ---------~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
-+...+.+..++...||++.+.
T Consensus 305 ~~g~~~~~siEls~edl~~v~~~~GF~~~ke 335 (369)
T KOG2798|consen 305 THGVENEMSIELSLEDLKRVASHRGFEVEKE 335 (369)
T ss_pred CCCCcccccccccHHHHHHHHHhcCcEEEEe
Confidence 0124455666668999999876
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.028 Score=48.93 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=73.2
Q ss_pred eEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccc
Q 046623 56 SVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVF 134 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~ 134 (218)
+++-+|||.--++..+-+.|...++.+|+|+ +++.....-... .....+...|...... ++++||+|+.-..+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~f----edESFdiVIdkGtl 124 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLVF----EDESFDIVIDKGTL 124 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhccC----CCcceeEEEecCcc
Confidence 9999999999999998888888999999999 776654333221 2346777777766655 78899999964333
Q ss_pred cCC----------cchHHHHHHHHHHhcCCCceEEEEE
Q 046623 135 YDP----------EEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 135 ~~~----------~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
.+. ......+..+.++++++|+.+.+..
T Consensus 125 Dal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 125 DALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 221 1234566788999999997666655
|
|
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.11 Score=43.03 Aligned_cols=148 Identities=15% Similarity=0.135 Sum_probs=87.9
Q ss_pred EEEECCCCCHHHHHH-HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc---ccCCCCcEEEEc
Q 046623 57 VLELGAGAGLPGLTA-ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL---SELGEFDMVIMS 131 (218)
Q Consensus 57 vLDlG~G~G~~~~~l-~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~D~Iv~~ 131 (218)
=+|||.|.-.+--.+ +....-...++|++. .+..|+.|.+.++++..+.++.....+...... .+...||.+.+|
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 368877654332222 333334788999999 999999999999998878777653322221111 123459999999
Q ss_pred ccccCCc----------------------chH---------HHHHHHH---HHhcCCCceEEEEEeec-cCChHHHHHHH
Q 046623 132 DVFYDPE----------------------EMV---------GLGKTLK---RVCGTGRHTVVWAVSEV-RTRTGDCLHEL 176 (218)
Q Consensus 132 ~~~~~~~----------------------~~~---------~~l~~~~---~lL~~gG~~~i~~~~~~-~~~~~~~~~~~ 176 (218)
+||+... ... .+...+. -.|+. ++-++.+.-. +..+.....++
T Consensus 186 PPFfe~~~Ea~~n~~~s~~rtpp~~vc~gg~~e~v~eggev~fvnRiitds~~lr~--~IrwYT~MlGKKsslk~l~~kL 263 (419)
T KOG2912|consen 186 PPFFENQLEAKGNNSRSPRRTPPSSVCTGGSQEFVSEGGEVSFVNRIITDSFVLRK--RIRWYTCMLGKKSSLKPLISKL 263 (419)
T ss_pred CchhhchhhhccccccCCCCCCcccccccchhHHHhhccHHHHHHHHHHHHHHhhh--cceEEeeecccccccHHHHHHH
Confidence 9997430 011 1111111 12222 2345555544 44566777777
Q ss_pred HHhCCcEEEEEEccCCCCCCCceeEEEecCC
Q 046623 177 IMSQGFRVIELTCQLGGGCPEAFAVYELIPP 207 (218)
Q Consensus 177 ~~~~gf~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (218)
.+.|-..+.+....+.....+-..|.|.+.
T Consensus 264 -~e~gv~kv~itel~qGkTkRW~LaWSF~~~ 293 (419)
T KOG2912|consen 264 -REQGVTKVKITELVQGKTKRWGLAWSFMPI 293 (419)
T ss_pred -HHcCCceEEEEEeeccccceeeEEeeeccc
Confidence 888877777666666444455555877643
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.054 Score=41.76 Aligned_cols=128 Identities=15% Similarity=0.075 Sum_probs=67.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CC-CeEEEecCcc-hH----H--HHHHHHHHhCCCCceEEEEeecCCCCccccccC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GA-TRVVLTDVKP-LL----P--GLINNVEANGLGGRVEVRELVWGSDDLSQLSEL 122 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~~D~~~-~~----~--~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 122 (218)
.++.+|+|+-.|.|.+...++.. ++ ..|.+.-..+ .. + .......+.. ..+++.+..+..... +.
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~-~aN~e~~~~~~~A~~-----~p 120 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV-YANVEVIGKPLVALG-----AP 120 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh-hhhhhhhCCcccccC-----CC
Confidence 46789999999999999888643 33 3555543332 11 1 1111111111 111233222211111 33
Q ss_pred CCCcEEEEc--------ccccCCcchHHHHHHHHHHhcCCCceEEEEEee------------ccCChHHHHHHHHHhCCc
Q 046623 123 GEFDMVIMS--------DVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE------------VRTRTGDCLHELIMSQGF 182 (218)
Q Consensus 123 ~~~D~Iv~~--------~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~------------~~~~~~~~~~~~~~~~gf 182 (218)
+..|+++.+ -.++ .....++...+.+.|||||.+++.-... .|-......... +..||
T Consensus 121 q~~d~~~~~~~yhdmh~k~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~v-eaaGF 198 (238)
T COG4798 121 QKLDLVPTAQNYHDMHNKNIH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEV-EAAGF 198 (238)
T ss_pred CcccccccchhhhhhhccccC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHH-Hhhcc
Confidence 445555542 2222 4667889999999999999444431110 112233445555 78898
Q ss_pred EEEEE
Q 046623 183 RVIEL 187 (218)
Q Consensus 183 ~~~~~ 187 (218)
...-.
T Consensus 199 kl~ae 203 (238)
T COG4798 199 KLEAE 203 (238)
T ss_pred eeeee
Confidence 87553
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.053 Score=43.95 Aligned_cols=100 Identities=23% Similarity=0.264 Sum_probs=57.0
Q ss_pred CeEEEECCC---CCHHHHHH-HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc--ccCCCCc-
Q 046623 55 KSVLELGAG---AGLPGLTA-ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL--SELGEFD- 126 (218)
Q Consensus 55 ~~vLDlG~G---~G~~~~~l-~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~D- 126 (218)
...|||||| .|.....+ ...+..+|+-+|.+| .+..++.-+..+.- .+..++.+|+.+...-.. ...+-+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 479999999 33333333 233456999999999 99888887766531 237899999876531000 0112233
Q ss_pred ----EEEEcccccCC---cchHHHHHHHHHHhcCCC
Q 046623 127 ----MVIMSDVFYDP---EEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 127 ----~Iv~~~~~~~~---~~~~~~l~~~~~lL~~gG 155 (218)
.+++..++|+. +++..++..+...|.||.
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS 184 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGS 184 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCc
Confidence 45555777664 568999999999999998
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.14 Score=43.24 Aligned_cols=109 Identities=17% Similarity=0.069 Sum_probs=66.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-----CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc---cc--c
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA-----TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS---QL--S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~-----~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~--~ 120 (218)
.++.+|||+.+..|.=+..+.+... ..|++-|.++ -+..+......... .+..+...|....... .. .
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccCchh
Confidence 4788999999999987776643311 2799999998 66666666543322 2233333333222111 10 1
Q ss_pred cCCCCcEEEEcccccCCc-----------------------chHHHHHHHHHHhcCCCceEEEEE
Q 046623 121 ELGEFDMVIMSDVFYDPE-----------------------EMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~~-----------------------~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
....||-|++.-|+.... ..-.++.+..++||+|| .+++.+
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG-~lVYST 296 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGG-RLVYST 296 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCC-EEEEec
Confidence 345799999865554321 13457778889999999 444433
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.016 Score=48.73 Aligned_cols=76 Identities=20% Similarity=0.142 Sum_probs=55.7
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 54 NKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
..+++|+.||.|.+++.+...|..-+.++|+++ +++.-+.|+.. ..++..|........+... .+|+++.++
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~-~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKS-DVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhcccc-CCCEEEeCC
Confidence 348999999999999999888877788999999 99888888643 3444445444333221111 799999999
Q ss_pred cccC
Q 046623 133 VFYD 136 (218)
Q Consensus 133 ~~~~ 136 (218)
|+..
T Consensus 76 PCQ~ 79 (328)
T COG0270 76 PCQD 79 (328)
T ss_pred CCcc
Confidence 9853
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.29 Score=43.14 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=52.5
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc------------c-
Q 046623 54 NKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ------------L- 119 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~------------~- 119 (218)
..+++|+.||.|.+++.+...|...+.++|+++ +.+.-+.|+... ....+...|+.+..... .
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~ 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEAAEHIR 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCccccccccchhhhhhhhh
Confidence 458999999999999999888876788999999 888877775211 11222333443332100 0
Q ss_pred ccCCCCcEEEEccccc
Q 046623 120 SELGEFDMVIMSDVFY 135 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~~ 135 (218)
.....+|+++.++|+.
T Consensus 165 ~~~p~~DvL~gGpPCQ 180 (467)
T PRK10458 165 QHIPDHDVLLAGFPCQ 180 (467)
T ss_pred ccCCCCCEEEEcCCCC
Confidence 0123689999988884
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.058 Score=47.51 Aligned_cols=96 Identities=16% Similarity=0.100 Sum_probs=71.4
Q ss_pred CeEEEECCCCCHHHHHH---HHhC--CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 55 KSVLELGAGAGLPGLTA---ARLG--ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l---~~~~--~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
..|.=+|+|-|.+.... ++.. .-+++++|.+| |+-.++. .......++++++..|+..... +..+.|++
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~a----p~eq~DI~ 443 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNA----PREQADII 443 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCC----chhhccch
Confidence 46888999999876654 2221 23799999999 7766554 4444455789999999877653 45789999
Q ss_pred EE--cccccCCcchHHHHHHHHHHhcCCC
Q 046623 129 IM--SDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 129 v~--~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
++ -..|.+.+.-.+.++.+.+.|||+|
T Consensus 444 VSELLGSFGDNELSPECLDG~q~fLkpdg 472 (649)
T KOG0822|consen 444 VSELLGSFGDNELSPECLDGAQKFLKPDG 472 (649)
T ss_pred HHHhhccccCccCCHHHHHHHHhhcCCCc
Confidence 95 2445556778899999999999999
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.44 Score=38.08 Aligned_cols=126 Identities=18% Similarity=0.117 Sum_probs=71.7
Q ss_pred ccccccchhHH-HHHHHHhc----CCCCCCCeEEEECCCCCHHHHHHHHh-CC-CeEEEecCcc-hHHHHHHHHHHhCCC
Q 046623 30 LTGAWLWDSAL-ILAQFIST----HFDFQNKSVLELGAGAGLPGLTAARL-GA-TRVVLTDVKP-LLPGLINNVEANGLG 101 (218)
Q Consensus 30 ~~g~~~w~~~~-~l~~~l~~----~~~~~~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~~D~~~-~~~~a~~~~~~~~~~ 101 (218)
...+.+|.--. .|+.-+.. .+..++.+||-||+++|..-.+++.. |. .-|.++|.+. .-..+..-+++. +
T Consensus 128 kvEyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--t 205 (317)
T KOG1596|consen 128 KVEYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--T 205 (317)
T ss_pred cEEEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--C
Confidence 56788898533 44444433 34478999999999999887777533 33 4689999888 544433222221 1
Q ss_pred CceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 102 GRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 102 ~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+.+.++ -|..-... -...-.-.|+|++ ++.. ++....+.-++...||+||.+++.+
T Consensus 206 NiiPIi-EDArhP~K-YRmlVgmVDvIFa-Dvaq-pdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 206 NIIPII-EDARHPAK-YRMLVGMVDVIFA-DVAQ-PDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred Cceeee-ccCCCchh-eeeeeeeEEEEec-cCCC-chhhhhhhhhhhhhhccCCeEEEEE
Confidence 223333 23221110 0012245777776 3322 2334445566777899999666553
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.007 Score=51.69 Aligned_cols=80 Identities=24% Similarity=0.262 Sum_probs=60.6
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCc-eEEEEe
Q 046623 32 GAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGR-VEVREL 109 (218)
Q Consensus 32 g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~-~~~~~~ 109 (218)
|...|.+-....+--...-..+|..|.|+.||.|.+++.+++.++ +|++-|.++ +++.++.|++.|.+.+. ++....
T Consensus 228 skVYWnsRL~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nm 306 (495)
T KOG2078|consen 228 SKVYWNSRLSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNM 306 (495)
T ss_pred ceEEeeccchhHHHHHhhccCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecc
Confidence 445577533333322222235788999999999999999998875 999999999 99999999999988765 777776
Q ss_pred ecC
Q 046623 110 VWG 112 (218)
Q Consensus 110 d~~ 112 (218)
|..
T Consensus 307 da~ 309 (495)
T KOG2078|consen 307 DAK 309 (495)
T ss_pred cHH
Confidence 654
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.11 Score=47.99 Aligned_cols=125 Identities=18% Similarity=0.133 Sum_probs=71.5
Q ss_pred CCeEEEECCCCCHHHHHHH-Hh-------C-----CCeEEEecCcc-hHHHHHHHHHH-------------------hCC
Q 046623 54 NKSVLELGAGAGLPGLTAA-RL-------G-----ATRVVLTDVKP-LLPGLINNVEA-------------------NGL 100 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~-~~-------~-----~~~v~~~D~~~-~~~~a~~~~~~-------------------~~~ 100 (218)
.-+|+|+|-|+|.-.+.+. .. . ..+++++|..| ..+.+.+.... .++
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3589999999997555442 11 1 23889999866 44333332211 111
Q ss_pred C------C--ceEEEEeecCCCCccccccCCCCcEEEEcccccC---Cc-chHHHHHHHHHHhcCCCceEEEEEeeccCC
Q 046623 101 G------G--RVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYD---PE-EMVGLGKTLKRVCGTGRHTVVWAVSEVRTR 168 (218)
Q Consensus 101 ~------~--~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~---~~-~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~ 168 (218)
. + .+++..+|..+... + ....+|.++. |.|.. ++ -..+++..+++++++|| .+.++ .
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~-~--~~~~~d~~~l-D~FsP~~np~~W~~~~~~~l~~~~~~~~--~~~t~-----t 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLP-Q--LDARADAWFL-DGFAPAKNPDMWSPNLFNALARLARPGA--TLATF-----T 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHH-h--ccccccEEEe-CCCCCccChhhccHHHHHHHHHHhCCCC--EEEEe-----e
Confidence 0 0 12233344332211 0 1246999998 44432 11 24789999999999999 33333 1
Q ss_pred hHHHHHHHHHhCCcEEEEEEc
Q 046623 169 TGDCLHELIMSQGFRVIELTC 189 (218)
Q Consensus 169 ~~~~~~~~~~~~gf~~~~~~~ 189 (218)
....++.-+...||.+.+.|-
T Consensus 207 ~a~~vr~~l~~~GF~v~~~~~ 227 (662)
T PRK01747 207 SAGFVRRGLQEAGFTVRKVKG 227 (662)
T ss_pred hHHHHHHHHHHcCCeeeecCC
Confidence 334455555899999988743
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.15 Score=42.81 Aligned_cols=94 Identities=20% Similarity=0.110 Sum_probs=59.9
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++++|+=.|+| .|..++.+++ .+ .+|+++|.++ ..+.+++- |. -.++... ....... -.+.+|+|
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l----GA---d~~i~~~-~~~~~~~--~~~~~d~i 233 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL----GA---DHVINSS-DSDALEA--VKEIADAI 233 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh----CC---cEEEEcC-CchhhHH--hHhhCcEE
Confidence 467888888887 4466777776 56 5999999999 88887654 21 2333322 1111111 12249999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEe
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVS 163 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~ 163 (218)
+..-+ ...+....++|+++|+++++-..
T Consensus 234 i~tv~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 234 IDTVG-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 96322 45677778899999966666433
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.12 Score=45.44 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=72.0
Q ss_pred CeEEEECCCCCHHHHHHHHhCCC--eEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 55 KSVLELGAGAGLPGLTAARLGAT--RVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~~~~--~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
..|+|..+|.|.++.++...+.- .|+-++-.+.+.. +-..|+ + -..-||.+.... -..+||+|-++.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~v----IydRGL---I-G~yhDWCE~fsT---YPRTYDLlHA~~ 435 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPV----IYDRGL---I-GVYHDWCEAFST---YPRTYDLLHADG 435 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCCCCcchh----hhhccc---c-hhccchhhccCC---CCcchhheehhh
Confidence 46999999999999999776531 2333321112222 222232 1 122355433210 357899999987
Q ss_pred cccC---CcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccC
Q 046623 133 VFYD---PEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQL 191 (218)
Q Consensus 133 ~~~~---~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~ 191 (218)
.|.. .-+++.++-+..|+|+|+| .+++-.. ..+-..++.+.....|+...+....
T Consensus 436 lfs~~~~rC~~~~illEmDRILRP~G--~~iiRD~--~~vl~~v~~i~~~lrW~~~~~d~e~ 493 (506)
T PF03141_consen 436 LFSLYKDRCEMEDILLEMDRILRPGG--WVIIRDT--VDVLEKVKKIAKSLRWEVRIHDTED 493 (506)
T ss_pred hhhhhcccccHHHHHHHhHhhcCCCc--eEEEecc--HHHHHHHHHHHHhCcceEEEEecCC
Confidence 7754 3457899999999999999 4443222 2334445555466677766654433
|
; GO: 0008168 methyltransferase activity |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.42 Score=40.30 Aligned_cols=82 Identities=13% Similarity=0.011 Sum_probs=41.6
Q ss_pred CCCCCeEEEECCCCCHHHHHHHH---------h---C-----CCeEEEecCcc-hHHHHHHHHHHh------CCCCceEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAAR---------L---G-----ATRVVLTDVKP-LLPGLINNVEAN------GLGGRVEV 106 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~---------~---~-----~~~v~~~D~~~-~~~~a~~~~~~~------~~~~~~~~ 106 (218)
..+.-+|+|+||.+|.-++.+.. . + .-+|+..|... -...+-+.+..+ .-..-+.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 34456899999999987776521 1 1 02788888766 444433333322 11111233
Q ss_pred EEeecCCCCccccccCCCCcEEEEcccccC
Q 046623 107 RELVWGSDDLSQLSELGEFDMVIMSDVFYD 136 (218)
Q Consensus 107 ~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~ 136 (218)
+.+.+-+ +..|.++.|++++...+|+
T Consensus 94 vpgSFy~----rLfP~~Svh~~~Ss~alHW 119 (334)
T PF03492_consen 94 VPGSFYG----RLFPSNSVHFGHSSYALHW 119 (334)
T ss_dssp EES-TTS------S-TT-EEEEEEES-TTB
T ss_pred cCchhhh----ccCCCCceEEEEEechhhh
Confidence 3344333 3348899999998887775
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.059 Score=37.38 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=25.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVK 85 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~ 85 (218)
+....+|||||+|.+.-.+.+.|. .=.|+|..
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 455799999999999888888776 56778854
|
; GO: 0008168 methyltransferase activity |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.61 Score=35.22 Aligned_cols=127 Identities=20% Similarity=0.119 Sum_probs=66.4
Q ss_pred ECCCCCHHHHHHHHh-C-CCeEEEecCcc---hHHH---HHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 60 LGAGAGLPGLTAARL-G-ATRVVLTDVKP---LLPG---LINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 60 lG~G~G~~~~~l~~~-~-~~~v~~~D~~~---~~~~---a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
+|=|.=.++..+++. + +..++++-.+. ..+. +..|+....-.+..-....|..+..........+||.|+.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 444555667777644 4 44666655544 2222 33454443211211222334444332111245789999998
Q ss_pred ccccC-------------CcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 132 DVFYD-------------PEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 132 ~~~~~-------------~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
.|... ...+..++..+.++|+++|.+.+-.... .++..=.+..+-++.|+...+.
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~-~py~~W~i~~lA~~~gl~l~~~ 150 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG-QPYDSWNIEELAAEAGLVLVRK 150 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC-CCCccccHHHHHHhcCCEEEEE
Confidence 88754 1236778889999999999433333322 1111111222326678887665
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.15 Score=43.44 Aligned_cols=112 Identities=17% Similarity=0.158 Sum_probs=69.7
Q ss_pred HHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHH-------hCC-CCceEEEEeec
Q 046623 42 LAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEA-------NGL-GGRVEVRELVW 111 (218)
Q Consensus 42 l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~-------~~~-~~~~~~~~~d~ 111 (218)
+...+.+....+++...|+|+|.|.+..+++.. +...-+|+++.+ .-+.+..+... .|. .+.+..+.+++
T Consensus 181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred HHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 444444433356789999999999988887644 445677777766 54444443332 233 34466777666
Q ss_pred CCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 112 GSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 112 ~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
.+.... .......++|++++..++.+..-.+- .+.+-+++|.
T Consensus 261 ~~~~~v-~eI~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gt 302 (419)
T KOG3924|consen 261 LDPKRV-TEIQTEATVIFVNNVAFDPELKLRSK-EILQKCKDGT 302 (419)
T ss_pred CCHHHH-HHHhhcceEEEEecccCCHHHHHhhH-HHHhhCCCcc
Confidence 544311 11346789999999887755444444 6777777766
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.17 Score=40.26 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=42.1
Q ss_pred cCCCCcEEEEcccccCC---------------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEE
Q 046623 121 ELGEFDMVIMSDVFYDP---------------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~---------------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~ 185 (218)
+++++|+|+.++|+... +-....+.++.++|||||.++++.. . .........+ .+.||.+.
T Consensus 17 pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~-~--~~~~~~~~al-~~~GF~l~ 92 (227)
T PRK13699 17 PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG-W--NRVDRFMAAW-KNAGFSVV 92 (227)
T ss_pred CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec-c--ccHHHHHHHH-HHCCCEEe
Confidence 67899999998887410 1135677888999999984333322 1 1233444444 78899877
Q ss_pred EEEcc
Q 046623 186 ELTCQ 190 (218)
Q Consensus 186 ~~~~~ 190 (218)
..-++
T Consensus 93 ~~IiW 97 (227)
T PRK13699 93 GHLVF 97 (227)
T ss_pred eEEEE
Confidence 65333
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.63 Score=39.99 Aligned_cols=83 Identities=12% Similarity=0.058 Sum_probs=45.2
Q ss_pred CCeEEEECCCCCHHHHHHHH---------h---C----CCeEEEecCcc-hHHHHHHHHHHhC------------CCCce
Q 046623 54 NKSVLELGAGAGLPGLTAAR---------L---G----ATRVVLTDVKP-LLPGLINNVEANG------------LGGRV 104 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~---------~---~----~~~v~~~D~~~-~~~~a~~~~~~~~------------~~~~~ 104 (218)
..+|+|+|||+|..++.+.. . + ..++..-|... -...+-+.+.... ...+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 55899999999977665411 1 1 14788888765 4444333332100 00111
Q ss_pred EEEEeecCCCCccccccCCCCcEEEEcccccCC
Q 046623 105 EVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP 137 (218)
Q Consensus 105 ~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~ 137 (218)
.|+. -+...-.....|.++.++++++..+|+.
T Consensus 144 ~f~~-gvpGSFY~RLfP~~Slh~~~Ss~slHWL 175 (386)
T PLN02668 144 YFAA-GVPGSFYRRLFPARSIDVFHSAFSLHWL 175 (386)
T ss_pred eEEE-ecCccccccccCCCceEEEEeeccceec
Confidence 2222 2222223334588899999988777653
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.18 Score=42.51 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=36.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh---------CCCeEEEecCcc-hHHHHHHHHHHhC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL---------GATRVVLTDVKP-LLPGLINNVEANG 99 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~---------~~~~v~~~D~~~-~~~~a~~~~~~~~ 99 (218)
.....++|+|+|.|.++..+.+. ...++..+|.|+ ..+..+++++...
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 44568999999999998876332 246899999999 7777777776543
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.45 Score=39.18 Aligned_cols=102 Identities=14% Similarity=-0.000 Sum_probs=70.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCC---CCceEEEEeecCCCCccccccCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGL---GGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
...+++|=+|.|-|......+++.. ..+..+|++. .++..++.++.-.. ..++....+|-.... +....++||
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl--~~~~~~~~d 197 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFL--EDLKENPFD 197 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHH--HHhccCCce
Confidence 3567899999999998888766632 5789999999 88888887765432 245777776533221 122468999
Q ss_pred EEEE--cccccCC--cchHHHHHHHHHHhcCCC
Q 046623 127 MVIM--SDVFYDP--EEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 127 ~Iv~--~~~~~~~--~~~~~~l~~~~~lL~~gG 155 (218)
+|+. ++|.... .-.+.+...+.+.||++|
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dg 230 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDG 230 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCc
Confidence 9995 3443221 124667788889999999
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.11 Score=43.07 Aligned_cols=95 Identities=20% Similarity=0.114 Sum_probs=58.0
Q ss_pred CCCCeEEEECCC-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEee-cCC--CCccccccCCCC
Q 046623 52 FQNKSVLELGAG-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELV-WGS--DDLSQLSELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d-~~~--~~~~~~~~~~~~ 125 (218)
.++.+||=+|+| .|......| ..|+++|+.+|.++ .++.|++ + |...-......+ ... ...........+
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 243 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALGKKQP 243 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhccccCC
Confidence 467899999999 566666655 56889999999999 9999887 3 322101111000 000 000001122347
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCc
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~ 156 (218)
|+.+-. .-.+..++.....++.+|.
T Consensus 244 d~~~dC------sG~~~~~~aai~a~r~gGt 268 (354)
T KOG0024|consen 244 DVTFDC------SGAEVTIRAAIKATRSGGT 268 (354)
T ss_pred CeEEEc------cCchHHHHHHHHHhccCCE
Confidence 877732 2336677778889999995
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.17 Score=42.92 Aligned_cols=52 Identities=19% Similarity=0.129 Sum_probs=37.4
Q ss_pred HHHHHHhcCCC-CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHH
Q 046623 41 ILAQFISTHFD-FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLI 92 (218)
Q Consensus 41 ~l~~~l~~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~ 92 (218)
.+.+.+.+..+ .+-..++|+|+|.|.++..++-.....|.++|-|. +.+.|.
T Consensus 140 ~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 140 RLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred HHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHH
Confidence 44444444223 34468999999999999999744445999999998 665554
|
|
| >PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.33 Score=39.02 Aligned_cols=121 Identities=17% Similarity=0.202 Sum_probs=70.9
Q ss_pred EEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccC
Q 046623 58 LELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYD 136 (218)
Q Consensus 58 LDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~ 136 (218)
+..-+||=.++..+.+. ..+.+++|.-+ ..+.+++++... .++.+...|-.........+..+=-+|++.+++..
T Consensus 62 l~~YPGSP~ia~~llR~-qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~ 137 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE-QDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQ 137 (245)
T ss_dssp --EEE-HHHHHHHHS-T-TSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----S
T ss_pred cCcCCCCHHHHHHhCCc-cceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCC
Confidence 45555554445455444 45899999999 888888887653 45778776644332222335566678999888888
Q ss_pred CcchHHHHHHHHHHhc--CCCceEEEEEeeccCChHHHHHHHHHhCCcE
Q 046623 137 PEEMVGLGKTLKRVCG--TGRHTVVWAVSEVRTRTGDCLHELIMSQGFR 183 (218)
Q Consensus 137 ~~~~~~~l~~~~~lL~--~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~ 183 (218)
..++..+.+.+.+.++ +.|..++|-....+.....+.+.+ .+.+..
T Consensus 138 ~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l-~~~~~~ 185 (245)
T PF04378_consen 138 KDDYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRAL-KALGIK 185 (245)
T ss_dssp TTHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHH-HHH-SS
T ss_pred chHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHH-HhcCCC
Confidence 8899999999998887 588778887766666677777777 555533
|
; PDB: 2OO3_A. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.46 Score=39.88 Aligned_cols=95 Identities=28% Similarity=0.265 Sum_probs=53.3
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc-ccCCCCcE
Q 046623 52 FQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL-SELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~D~ 127 (218)
.++.+||=.|+| .|..++.+++ .|+.+++++|.++ ..+.+++ .|.. .++ |..+...... ...+.+|+
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~---~vi--~~~~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGAD---KLV--NPQNDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCc---EEe--cCCcccHHHHhccCCCCCE
Confidence 467888888875 3444444454 4555799999888 7766653 3322 111 1111111111 12235898
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
|+- +... ...+..+.++++++|+++.+.
T Consensus 239 vid--~~G~----~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 239 SFE--VSGH----PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EEE--CCCC----HHHHHHHHHHhhcCCEEEEEc
Confidence 874 2221 346677888999999555543
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=1 Score=40.24 Aligned_cols=102 Identities=27% Similarity=0.334 Sum_probs=59.7
Q ss_pred CCCCeEEEECCC-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC----------ccc
Q 046623 52 FQNKSVLELGAG-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD----------LSQ 118 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------~~~ 118 (218)
.++.+|+=+|+| .|..++..+ ..|+ .|+++|.++ ..+.++. .| .++...+..+.. ...
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes----lG----A~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES----MG----AEFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cC----CeEEEeccccccccccchhhhcchh
Confidence 468899999999 666777666 4566 899999998 7777654 23 222211111100 000
Q ss_pred -------c-cc-CCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 119 -------L-SE-LGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 119 -------~-~~-~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
. .. ...+|+++-.-.......+..+.+...+.++|||.++.+..
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 00 14699999633221111233345889999999995544433
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.26 Score=36.86 Aligned_cols=121 Identities=16% Similarity=0.123 Sum_probs=65.9
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHH-HHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 54 NKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPG-LINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~-a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
+++.+=+|+..=..-..+.+.|+.++..+|.++ -++. .+..+ ..+...|+... . ..-.++||.+.+.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~--------ssi~p~df~~~-~--~~y~~~fD~~as~ 70 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL--------SSILPVDFAKN-W--QKYAGSFDFAASF 70 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc--------ccccHHHHHHH-H--HHhhccchhhhee
Confidence 457788888765555555678888999999886 3322 11111 01111111111 0 0134678888876
Q ss_pred ccccCC-----------cchHHHHHHHHHHhcCCCceEEEEE--------eeccCChHHHHHHHHHhCCcEEEEE
Q 046623 132 DVFYDP-----------EEMVGLGKTLKRVCGTGRHTVVWAV--------SEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 132 ~~~~~~-----------~~~~~~l~~~~~lL~~gG~~~i~~~--------~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
..+.+. .-....+..+.++||+||.+++-+. ...|-+-...+. |.-.||++...
T Consensus 71 ~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~--mm~~gfe~i~t 143 (177)
T PF03269_consen 71 SSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLA--MMFYGFEWIDT 143 (177)
T ss_pred chhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHH--HHhCCcEEEee
Confidence 655432 1134456678889999994433321 122222333333 34689998887
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=4.7 Score=34.66 Aligned_cols=130 Identities=17% Similarity=0.132 Sum_probs=81.9
Q ss_pred EEcCeEEEEEeccCcCCCCccccccccccchhHH-HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCc
Q 046623 7 EIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSAL-ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVK 85 (218)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~-~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~ 85 (218)
+....++++...+.+-.+ ..+..||.+. .|.+.+... ... .+|+=++=.-|.++..++..+.. ...| +
T Consensus 5 ~~~~~~~~l~r~p~~~~~------~~l~awdaade~ll~~~~~~-~~~-~~~~i~nd~fGal~~~l~~~~~~--~~~d-s 73 (378)
T PRK15001 5 DNGFRSLTLQRFPATDDV------NPLQAWEAADEYLLQQLDDT-EIR-GPVLILNDAFGALSCALAEHKPY--SIGD-S 73 (378)
T ss_pred ccCCceeEEEECCCCCCc------CcccccccHHHHHHHHHhhc-ccC-CCEEEEcCchhHHHHHHHhCCCC--eeeh-H
Confidence 455588899888754322 2367788765 333333321 112 38999999999999999865442 1123 2
Q ss_pred c-hHHHHHHHHHHhCCCCc-eEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCc
Q 046623 86 P-LLPGLINNVEANGLGGR-VEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 86 ~-~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~ 156 (218)
- +....+.|++.|+++.. +++. +..+. ..+.+|+|++- ..-+.+..+..+..+.+++.+|+.
T Consensus 74 ~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~------~~~~~d~vl~~-~PK~~~~l~~~l~~l~~~l~~~~~ 137 (378)
T PRK15001 74 YISELATRENLRLNGIDESSVKFL--DSTAD------YPQQPGVVLIK-VPKTLALLEQQLRALRKVVTSDTR 137 (378)
T ss_pred HHHHHHHHHHHHHcCCCcccceee--ccccc------ccCCCCEEEEE-eCCCHHHHHHHHHHHHhhCCCCCE
Confidence 2 56668999999987532 3333 22221 33569999883 333345677788888999999993
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.81 Score=37.14 Aligned_cols=102 Identities=19% Similarity=0.107 Sum_probs=71.3
Q ss_pred hhHHHHHHHHhc-CC-------CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEE
Q 046623 37 DSALILAQFIST-HF-------DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRE 108 (218)
Q Consensus 37 ~~~~~l~~~l~~-~~-------~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~ 108 (218)
.|+..|.+.+.. .+ ..++...+|+|+..|..+-.+.+.+- .|+++|-.++.+.+... ..++...
T Consensus 187 RStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~dt-------g~v~h~r 258 (358)
T COG2933 187 RSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLMDT-------GQVTHLR 258 (358)
T ss_pred hhhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhhcc-------cceeeee
Confidence 466667666655 11 24677899999999999999988865 89999977655544332 4577777
Q ss_pred eecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCC
Q 046623 109 LVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTG 154 (218)
Q Consensus 109 ~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~g 154 (218)
.|-....+ ...+.|..+|.-+ +.+..+-..+.++|..|
T Consensus 259 ~DGfk~~P----~r~~idWmVCDmV----EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 259 EDGFKFRP----TRSNIDWMVCDMV----EKPARVAALIAKWLVNG 296 (358)
T ss_pred ccCccccc----CCCCCceEEeehh----cCcHHHHHHHHHHHHcc
Confidence 66555443 3578999999544 55666667777777754
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=93.01 E-value=2.2 Score=33.55 Aligned_cols=74 Identities=20% Similarity=0.169 Sum_probs=47.6
Q ss_pred CCeEEEECCCCCH--HHHHH--H-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 54 NKSVLELGAGAGL--PGLTA--A-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 54 ~~~vLDlG~G~G~--~~~~l--~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
-+.+++..|+.|. .++.| | +.-..+++++-.++ .....++.+...+..+.++|+.++-..... ..-...|+
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~---~~~~~iDF 118 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVM---PGLKGIDF 118 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHH---hhccCCCE
Confidence 4579999776442 34443 3 33345888888888 777777787777776667888754211111 13367999
Q ss_pred EEE
Q 046623 128 VIM 130 (218)
Q Consensus 128 Iv~ 130 (218)
++.
T Consensus 119 ~vV 121 (218)
T PF07279_consen 119 VVV 121 (218)
T ss_pred EEE
Confidence 998
|
The function of this family is unknown. |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.6 Score=42.91 Aligned_cols=98 Identities=15% Similarity=0.074 Sum_probs=64.6
Q ss_pred eEEEECCCCCHHHHHH---H-HhCC-CeEEEecCcc-hHHHHHHHH-HHhCC-------CCceEEEEeecCCCCccc---
Q 046623 56 SVLELGAGAGLPGLTA---A-RLGA-TRVVLTDVKP-LLPGLINNV-EANGL-------GGRVEVRELVWGSDDLSQ--- 118 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l---~-~~~~-~~v~~~D~~~-~~~~a~~~~-~~~~~-------~~~~~~~~~d~~~~~~~~--- 118 (218)
.|+=+|+|-|.+--.+ + ..+. .+++++|.|+ ++.....+. ....+ .+.|+++..|+.......
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999765543 2 2232 3899999996 554443332 11122 245899999987764311
Q ss_pred -c---ccCCCCcEEEE--cccccCCcchHHHHHHHHHHhcC
Q 046623 119 -L---SELGEFDMVIM--SDVFYDPEEMVGLGKTLKRVCGT 153 (218)
Q Consensus 119 -~---~~~~~~D~Iv~--~~~~~~~~~~~~~l~~~~~lL~~ 153 (218)
. ...+++|+||+ -..|.+.+...+.|+.+.+.||+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhh
Confidence 0 01137999996 45566667788899999999986
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.79 Score=35.40 Aligned_cols=120 Identities=17% Similarity=0.124 Sum_probs=74.8
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHH----hC-CCeEEEecCcc-hHHHHHHHHHHhCCCCc
Q 046623 30 LTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAAR----LG-ATRVVLTDVKP-LLPGLINNVEANGLGGR 103 (218)
Q Consensus 30 ~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~----~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~ 103 (218)
+-|...|.+.+.+..+-.-....++..|+|+|+-.|..++..|. .| ..+|.++|++- .+..+... . .+
T Consensus 46 wmG~p~~k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~ 119 (237)
T COG3510 46 WMGIPCIKSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PD 119 (237)
T ss_pred EecccccCCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CC
Confidence 34556677777666653322335778999999999988877643 23 24899999886 44332211 1 55
Q ss_pred eEEEEeecCCCCcc-cc--ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 104 VEVRELVWGSDDLS-QL--SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 104 ~~~~~~d~~~~~~~-~~--~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
+.++.++-.+.... +. ...+.--+.++-+.-|+.+..-+-++.+.++|..|-
T Consensus 120 i~f~egss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~ 174 (237)
T COG3510 120 ILFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGD 174 (237)
T ss_pred eEEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCc
Confidence 88998776554422 11 122233444455666666666677788888998887
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.29 Score=40.28 Aligned_cols=77 Identities=5% Similarity=-0.090 Sum_probs=45.3
Q ss_pred eEEEEeecCCCCccccccCCCCcEEEEcccccCC----------------cchHHHHHHHHHHhcCCCceEEEEEeeccC
Q 046623 104 VEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP----------------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRT 167 (218)
Q Consensus 104 ~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~----------------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~ 167 (218)
..++.+|..+... ..+.+++|+|++++|+... ..+..++..+.++||+||.++++.. . .
T Consensus 9 ~~i~~gD~~~~l~--~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~-~--~ 83 (284)
T PRK11524 9 KTIIHGDALTELK--KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS-T--E 83 (284)
T ss_pred CEEEeccHHHHHH--hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC-c--h
Confidence 4566666554321 1156789999998887421 1125688899999999995444422 1 1
Q ss_pred ChHHHHHHHHHhCCcEEEEE
Q 046623 168 RTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 168 ~~~~~~~~~~~~~gf~~~~~ 187 (218)
.. ..+..+ .+.+|.....
T Consensus 84 ~~-~~~~~~-~~~~f~~~~~ 101 (284)
T PRK11524 84 NM-PFIDLY-CRKLFTIKSR 101 (284)
T ss_pred hh-hHHHHH-HhcCcceEEE
Confidence 12 233334 4667766554
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.02 E-value=2 Score=36.37 Aligned_cols=99 Identities=23% Similarity=0.154 Sum_probs=60.6
Q ss_pred CCCCeEEEECCC-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc-c-c-CCCC
Q 046623 52 FQNKSVLELGAG-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL-S-E-LGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~-~-~~~~ 125 (218)
.++.+|+=+||| -|.++..++ ..|+.+|+.+|.++ -++.|++... .+.....-.+...... . . ...+
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g-------~~~~~~~~~~~~~~~~~~~t~g~g~ 239 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG-------ADVVVNPSEDDAGAEILELTGGRGA 239 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC-------CeEeecCccccHHHHHHHHhCCCCC
Confidence 344589999999 577766665 55778999999999 8888876431 1111111010100000 1 1 1369
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEe
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVS 163 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~ 163 (218)
|+++= +-. ....+..+.++++++|.+.++...
T Consensus 240 D~vie--~~G----~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 240 DVVIE--AVG----SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CEEEE--CCC----CHHHHHHHHHHhcCCCEEEEEecc
Confidence 99983 211 345788888999999966665444
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.65 Score=36.90 Aligned_cols=110 Identities=22% Similarity=0.164 Sum_probs=64.1
Q ss_pred hHHHHHHHHhcCCCCCC-CeEEEECCCCCHHHHHHHHh--C------C--CeEEEecCcchHHHHHHHHHHhCCCCceEE
Q 046623 38 SALILAQFISTHFDFQN-KSVLELGAGAGLPGLTAARL--G------A--TRVVLTDVKPLLPGLINNVEANGLGGRVEV 106 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~-~~vLDlG~G~G~~~~~l~~~--~------~--~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~ 106 (218)
+++.|.+.=.+...+++ .+++|+.+..|.++..+++. . . ..++++|+.++... ..+..
T Consensus 25 SAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI-----------~GV~q 93 (294)
T KOG1099|consen 25 SAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI-----------EGVIQ 93 (294)
T ss_pred hHHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc-----------CceEE
Confidence 33444433222233444 58999999999999999643 1 1 13999998873221 22666
Q ss_pred EEeecCCCCccc----cccCCCCcEEEEcccc-----cCCcc------hHHHHHHHHHHhcCCCceE
Q 046623 107 RELVWGSDDLSQ----LSELGEFDMVIMSDVF-----YDPEE------MVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 107 ~~~d~~~~~~~~----~~~~~~~D~Iv~~~~~-----~~~~~------~~~~l~~~~~lL~~gG~~~ 158 (218)
+.+|+......+ ++..++.|+|++.... |..+. +.+.+.-...+|+|||.++
T Consensus 94 lq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 94 LQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred eecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 777776554222 2234689999985332 22222 2233344456889999443
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.21 Score=41.56 Aligned_cols=78 Identities=13% Similarity=0.066 Sum_probs=49.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc-c-cCCCCcE
Q 046623 52 FQNKSVLELGAGAGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL-S-ELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~-~~~~~D~ 127 (218)
.++..++|.--|.|..+..+.+ .+..+++++|.++ +++.+++++... .+++.++..++.+...... . ...++|-
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~~dg 96 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINKVDG 96 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-EEE
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCccCE
Confidence 5677999999999999998864 4557999999999 999998877644 3567777766554321111 1 2246777
Q ss_pred EEEc
Q 046623 128 VIMS 131 (218)
Q Consensus 128 Iv~~ 131 (218)
|++.
T Consensus 97 iL~D 100 (310)
T PF01795_consen 97 ILFD 100 (310)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7753
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=91.19 E-value=2.5 Score=36.14 Aligned_cols=100 Identities=20% Similarity=0.185 Sum_probs=57.9
Q ss_pred CCCCeEEEECCCC-CHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC--Ccc---ccccCC
Q 046623 52 FQNKSVLELGAGA-GLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD--DLS---QLSELG 123 (218)
Q Consensus 52 ~~~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~---~~~~~~ 123 (218)
.++.+||..|||. |.....+++. |..++++++.++ ..+.+++.. + ..++. .... ... ......
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~----~~vi~--~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---G----AETIN--FEEVDDVVEALRELTGGR 253 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---C----cEEEc--CCcchHHHHHHHHHcCCC
Confidence 4677999999875 6666666644 444699999988 777766542 1 12221 1111 001 111223
Q ss_pred CCcEEEEccc---------------ccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 124 EFDMVIMSDV---------------FYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 124 ~~D~Iv~~~~---------------~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.+|+|+-.-. +....+....+..+.++++++|.++.+
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 6898874210 001123356788889999999955554
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.74 Score=32.99 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=38.4
Q ss_pred CCCcEEEEcccccCCcc----hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEcc
Q 046623 123 GEFDMVIMSDVFYDPEE----MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQ 190 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~----~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~ 190 (218)
..+|.|+. |.|..... ..+++..+.+++++|| .+.++ .....++..+.+.||.+.+.|-.
T Consensus 49 ~~~Da~yl-DgFsP~~nPelWs~e~~~~l~~~~~~~~--~l~Ty-----s~a~~Vr~~L~~aGF~v~~~~g~ 112 (124)
T PF05430_consen 49 ARFDAWYL-DGFSPAKNPELWSEELFKKLARLSKPGG--TLATY-----SSAGAVRRALQQAGFEVEKVPGF 112 (124)
T ss_dssp T-EEEEEE--SS-TTTSGGGSSHHHHHHHHHHEEEEE--EEEES-------BHHHHHHHHHCTEEEEEEE-S
T ss_pred ccCCEEEe-cCCCCcCCcccCCHHHHHHHHHHhCCCc--EEEEe-----echHHHHHHHHHcCCEEEEcCCC
Confidence 67999998 44433222 4789999999999998 32222 12234555558999999998744
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.95 E-value=3.4 Score=38.37 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=58.5
Q ss_pred cCCCCccccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHH
Q 046623 21 VCDSVTGRPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNV 95 (218)
Q Consensus 21 ~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~ 95 (218)
.|.+.+..+......|+..+.-..........+++++|=.|++. .++..+ ++.|. +|+.+|.++ ..+.+...+
T Consensus 389 ~~~~l~~~~~f~i~~~~~e~a~l~~~~~~~~l~gk~vLVTGasg-gIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l 466 (681)
T PRK08324 389 RYEPLSEQEAFDIEYWSLEQAKLQRMPKPKPLAGKVALVTGAAG-GIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAEL 466 (681)
T ss_pred CccCCChhhhcceeeehhhhhhhhcCCCCcCCCCCEEEEecCCC-HHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHH
Confidence 35555544444444565444322211111224677888777643 444433 45565 899999988 666555443
Q ss_pred HHhCCCCceEEEEeecCCCCcc-cc-----ccCCCCcEEEEccc
Q 046623 96 EANGLGGRVEVRELVWGSDDLS-QL-----SELGEFDMVIMSDV 133 (218)
Q Consensus 96 ~~~~~~~~~~~~~~d~~~~~~~-~~-----~~~~~~D~Iv~~~~ 133 (218)
... ..+.++.+|+.+...- .. ...+.+|+|+.+..
T Consensus 467 ~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDvvI~~AG 507 (681)
T PRK08324 467 GGP---DRALGVACDVTDEAAVQAAFEEAALAFGGVDIVVSNAG 507 (681)
T ss_pred hcc---CcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 322 3477888887654311 10 11247899997654
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.88 Score=36.65 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=32.1
Q ss_pred CCeEEEECCCCCHHHHHHHHh---------CCCeEEEecCcc-hHHHHHHHHHH
Q 046623 54 NKSVLELGAGAGLPGLTAARL---------GATRVVLTDVKP-LLPGLINNVEA 97 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~---------~~~~v~~~D~~~-~~~~a~~~~~~ 97 (218)
..+|+|+|+|+|.++..+... ...+++.+|.|+ ..+..++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 469999999999998887432 125899999999 87777777654
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=90.63 E-value=0.46 Score=38.29 Aligned_cols=125 Identities=14% Similarity=0.125 Sum_probs=62.8
Q ss_pred CCeEEEECCCCCHHHHHHHH----hC--CCeEEEecCc--------------------------c-hHHHHHHHHHHhCC
Q 046623 54 NKSVLELGAGAGLPGLTAAR----LG--ATRVVLTDVK--------------------------P-LLPGLINNVEANGL 100 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~----~~--~~~v~~~D~~--------------------------~-~~~~a~~~~~~~~~ 100 (218)
+..|+|+||--|..++.++. .+ .+++++.|.= . ..+..++|+...++
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 44899999999987776532 22 2467766621 1 23444555554443
Q ss_pred -CCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHh
Q 046623 101 -GGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMS 179 (218)
Q Consensus 101 -~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~ 179 (218)
.+++.++.+.+.+..... +.+++-++-+.--+| +.....++.+...|.||| +|++.........+.+.....+
T Consensus 155 ~~~~v~~vkG~F~dTLp~~--p~~~IAll~lD~DlY--esT~~aLe~lyprl~~GG--iIi~DDY~~~gcr~AvdeF~~~ 228 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDA--PIERIALLHLDCDLY--ESTKDALEFLYPRLSPGG--IIIFDDYGHPGCRKAVDEFRAE 228 (248)
T ss_dssp SSTTEEEEES-HHHHCCC---TT--EEEEEE---SH--HHHHHHHHHHGGGEEEEE--EEEESSTTTHHHHHHHHHHHHH
T ss_pred CcccEEEECCcchhhhccC--CCccEEEEEEeccch--HHHHHHHHHHHhhcCCCe--EEEEeCCCChHHHHHHHHHHHH
Confidence 356899988775443211 233444444433333 345677888888999999 4444322222234445555456
Q ss_pred CCcEE
Q 046623 180 QGFRV 184 (218)
Q Consensus 180 ~gf~~ 184 (218)
.|...
T Consensus 229 ~gi~~ 233 (248)
T PF05711_consen 229 HGITD 233 (248)
T ss_dssp TT--S
T ss_pred cCCCC
Confidence 66544
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=90.14 E-value=13 Score=33.15 Aligned_cols=151 Identities=10% Similarity=0.024 Sum_probs=83.4
Q ss_pred CCCeEEEECCCCCHHHHHHHH---hC--CCeEEEecCcc-hHHHHHHHHHHhCCCC-ceEEEEeecCCCCccccccCCCC
Q 046623 53 QNKSVLELGAGAGLPGLTAAR---LG--ATRVVLTDVKP-LLPGLINNVEANGLGG-RVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~---~~--~~~v~~~D~~~-~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
++..+.|..||+|.+.+...+ .+ ...+++.+.+. +...++.|+...+... ......+|-.... ......+|
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~--d~~~~~~~ 294 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTK--EWENENGF 294 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCc--cccccccC
Confidence 456899999999988776532 12 13689999999 8888998877665432 1222222221111 11134579
Q ss_pred cEEEEcccccC-C--c----------------------chHHHHHHHHHHhcCCCceEEEEEeecc--CC-hHHHHHHHH
Q 046623 126 DMVIMSDVFYD-P--E----------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVR--TR-TGDCLHELI 177 (218)
Q Consensus 126 D~Iv~~~~~~~-~--~----------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~--~~-~~~~~~~~~ 177 (218)
|.|++++|+.. + . .-..++......|++||+..++...... .. .......+
T Consensus 295 D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~gvl~~~~~e~~ir~~l- 373 (501)
T TIGR00497 295 EVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPGILYREGKEQTIRKYL- 373 (501)
T ss_pred CEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCCcccCCCchHHHHHHH-
Confidence 99999887632 1 0 1123555566788999966666443321 11 22334444
Q ss_pred HhCCcEEEEE--EccCCCCCCCceeEEEecC
Q 046623 178 MSQGFRVIEL--TCQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 178 ~~~gf~~~~~--~~~~~~~~~~~~~l~~~~~ 206 (218)
-..+...-.+ |.....+......++-+.+
T Consensus 374 L~~~~~~avi~Lp~~~f~~t~i~~~I~~~~k 404 (501)
T TIGR00497 374 VDQNFVDAVIQLPSNLFSTTSIATSILVLKK 404 (501)
T ss_pred HHcCcEEEEEeCCccccCCCCCCEEEEEEeC
Confidence 3444443333 4444434334445544443
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >KOG2497 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.04 E-value=0.2 Score=40.61 Aligned_cols=122 Identities=29% Similarity=0.226 Sum_probs=68.0
Q ss_pred ccccccccchhHHHHHHHHhcCCC-CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc----hHHHHHHHHHHhCCCC
Q 046623 28 RPLTGAWLWDSALILAQFISTHFD-FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP----LLPGLINNVEANGLGG 102 (218)
Q Consensus 28 ~~~~g~~~w~~~~~l~~~l~~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~----~~~~a~~~~~~~~~~~ 102 (218)
-..+|.-+|++.+.|..++.+.++ .++.++.++|||.+..+...++.+. .+...+... .++....+........
T Consensus 64 ~~~tg~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~~~-~v~~~~~~~~~~~~l~~~~~~~~~~~~~~ 142 (262)
T KOG2497|consen 64 LARTGLSVWESALSLEADLRDKPDLSSELTVEELGCDIALKHVLAARVPD-CVVTLDSLRCAGLLLEEIILLSRDLSLEV 142 (262)
T ss_pred HHHhccccchHHHHHHHHHhhCcccccccchHhhccCHHHHHHHHHhccc-ceecCCccCcHHHHHHHHHhccccccccc
Confidence 345678899999999999998766 6778999999999988855666643 333333222 2222222221111110
Q ss_pred ceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHh
Q 046623 103 RVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVC 151 (218)
Q Consensus 103 ~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL 151 (218)
.-..-..++..............|+++..++.|. .....+++.+..+|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL 190 (262)
T KOG2497|consen 143 RDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLL 190 (262)
T ss_pred cccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHH
Confidence 0000000000000000001234899999899887 66666666666644
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.95 Score=35.18 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=33.1
Q ss_pred CcEEEEcccccCCcc-------------------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCC-cEE
Q 046623 125 FDMVIMSDVFYDPEE-------------------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQG-FRV 184 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~-------------------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~g-f~~ 184 (218)
+|+|+.++|+....+ +...+..+.++|+|+|.+++.+....... .....+.+..| |..
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~--~~~~~~~~~~g~~~~ 78 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDREIAG--FLFELALEIFGGFFL 78 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECT--HHHHHHHHHHTT-EE
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchhhhH--HHHHHHHHHhhhhhe
Confidence 377888777654322 57788888999999995555544333222 12222223345 877
Q ss_pred EEEE
Q 046623 185 IELT 188 (218)
Q Consensus 185 ~~~~ 188 (218)
...-
T Consensus 79 ~~~i 82 (231)
T PF01555_consen 79 RNEI 82 (231)
T ss_dssp EEEE
T ss_pred eccc
Confidence 6653
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=89.46 E-value=1.3 Score=38.08 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=37.3
Q ss_pred ccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHH
Q 046623 34 WLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGL 91 (218)
Q Consensus 34 ~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a 91 (218)
..|+......+.|.- .++++||-|.+| |.-.+.....++++|++||+|+ .....
T Consensus 19 ~~WEDp~vD~~aL~i---~~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLl 73 (380)
T PF11899_consen 19 QCWEDPRVDMEALNI---GPDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALL 73 (380)
T ss_pred cccCCcHHHHHHhCC---CCCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHH
Confidence 358887777776654 577899999665 4444444455567999999999 54443
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=89.38 E-value=2.1 Score=32.81 Aligned_cols=130 Identities=19% Similarity=0.223 Sum_probs=57.6
Q ss_pred eEEEECCC-CCH-HHHHHHHhCCCeEEEecCcc-hHHHHHHHH------------HHhCCCCceEEEEeecCCCCccccc
Q 046623 56 SVLELGAG-AGL-PGLTAARLGATRVVLTDVKP-LLPGLINNV------------EANGLGGRVEVRELVWGSDDLSQLS 120 (218)
Q Consensus 56 ~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~------------~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (218)
+|-=+|.| .|. .+..++..|. +|+++|+++ .++...+.. ++..-..++.+. .|+..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~------- 72 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEE------- 72 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHH-------
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhh-------
Confidence 34456666 343 2334467776 999999998 666543221 000000112221 11110
Q ss_pred cCCCCcEEEEc-ccccCC------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhC-----CcEEEEEE
Q 046623 121 ELGEFDMVIMS-DVFYDP------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQ-----GFRVIELT 188 (218)
Q Consensus 121 ~~~~~D~Iv~~-~~~~~~------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~-----gf~~~~~~ 188 (218)
.....|+++.. +..... ....+.++.+.+.++++. ++++-++-.--..++.+..++++. .|.+...|
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~-lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~P 151 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGD-LVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSP 151 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCE-EEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE--
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcc-eEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECC
Confidence 12347777753 322221 225777888888999854 444433333333444565555543 36676667
Q ss_pred ccCCCCC
Q 046623 189 CQLGGGC 195 (218)
Q Consensus 189 ~~~~~~~ 195 (218)
....+|.
T Consensus 152 Erl~~G~ 158 (185)
T PF03721_consen 152 ERLREGR 158 (185)
T ss_dssp ----TTS
T ss_pred CccCCCC
Confidence 7777654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.37 E-value=1.6 Score=35.82 Aligned_cols=48 Identities=25% Similarity=0.512 Sum_probs=41.7
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh
Q 046623 50 FDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN 98 (218)
Q Consensus 50 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~ 98 (218)
...++..|||..+|+|..++.+...+. +.+++|+++ .++.+.+.+...
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 457889999999999999999988865 899999999 888888887654
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=89.24 E-value=2.5 Score=35.58 Aligned_cols=93 Identities=19% Similarity=0.200 Sum_probs=50.7
Q ss_pred CCCCeEEEECCC-CCHHHHHHHHh-CCCeEEEecC---cc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCC
Q 046623 52 FQNKSVLELGAG-AGLPGLTAARL-GATRVVLTDV---KP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~~-~~~~v~~~D~---~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
.++.+||=+|+| .|..+..+++. |+ ++++++. ++ ..+.++ ..|. +++ +..+....+......+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~----~~Ga----~~v--~~~~~~~~~~~~~~~~ 239 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVE----ELGA----TYV--NSSKTPVAEVKLVGEF 239 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHH----HcCC----EEe--cCCccchhhhhhcCCC
Confidence 367789988875 34455555544 55 8999986 34 444433 3332 222 1111111001123468
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
|+|+- +... ...+....++++++|.++++.
T Consensus 240 d~vid--~~g~----~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 240 DLIIE--ATGV----PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CEEEE--CcCC----HHHHHHHHHHccCCcEEEEEe
Confidence 98884 2211 246777889999999555443
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.08 E-value=5 Score=32.46 Aligned_cols=101 Identities=20% Similarity=0.159 Sum_probs=58.4
Q ss_pred CCCeEEEECCCCCHHHHHH----HHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCC-C
Q 046623 53 QNKSVLELGAGAGLPGLTA----ARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGE-F 125 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l----~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~ 125 (218)
.+.+.+|+|+|+..-+..+ +..+ ..+++.+|++. .+......+...-..-.+.-+.+|++.... +. +..+ -
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La-~~-~~~~~R 155 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALA-EL-PRGGRR 155 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHh-cc-cCCCeE
Confidence 4679999999988655544 2222 25899999999 665544443332211113444444432211 11 2111 1
Q ss_pred cEEEEcccccC--CcchHHHHHHHHHHhcCCC
Q 046623 126 DMVIMSDVFYD--PEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 126 D~Iv~~~~~~~--~~~~~~~l~~~~~lL~~gG 155 (218)
=.++....+.+ +.+...++..++..++||-
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd 187 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGD 187 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcc
Confidence 12334444543 4678889999999999998
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=89.01 E-value=2.7 Score=30.11 Aligned_cols=91 Identities=18% Similarity=0.146 Sum_probs=48.6
Q ss_pred HHHHHhcCCCCCCCeEEEECCCCC-HHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccc
Q 046623 42 LAQFISTHFDFQNKSVLELGAGAG-LPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLS 120 (218)
Q Consensus 42 l~~~l~~~~~~~~~~vLDlG~G~G-~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (218)
+++++... ....+|+|+|-|.= ..+..+++.|. .|+++|+++. +.. . .+.++.-|+.+....
T Consensus 4 ~a~~ia~~--~~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~------~a~-~----g~~~v~DDif~P~l~--- 66 (127)
T PF03686_consen 4 FAEYIARL--NNYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR------KAP-E----GVNFVVDDIFNPNLE--- 66 (127)
T ss_dssp HHHHHHHH--S-SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S---------------STTEE---SSS--HH---
T ss_pred HHHHHHHh--CCCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc------ccc-c----CcceeeecccCCCHH---
Confidence 55565531 23449999999965 46667788885 9999999874 111 1 266777677665431
Q ss_pred cCCCCcEEEEcccccCCcchHHHHHHHHHHhc
Q 046623 121 ELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCG 152 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~ 152 (218)
.=...|+|.+-.|. .+++..+..+++.+.
T Consensus 67 iY~~a~lIYSiRPP---~El~~~il~lA~~v~ 95 (127)
T PF03686_consen 67 IYEGADLIYSIRPP---PELQPPILELAKKVG 95 (127)
T ss_dssp HHTTEEEEEEES-----TTSHHHHHHHHHHHT
T ss_pred HhcCCcEEEEeCCC---hHHhHHHHHHHHHhC
Confidence 12578999986663 445555555555543
|
; PDB: 2K4M_A. |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=88.98 E-value=3.6 Score=33.40 Aligned_cols=101 Identities=15% Similarity=0.081 Sum_probs=56.8
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCC--CCceEEEEeecCCCCccccccC-----CCCc
Q 046623 54 NKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGL--GGRVEVRELVWGSDDLSQLSEL-----GEFD 126 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~-----~~~D 126 (218)
...|+.||||-=.-...+......+++=+|....++.-++.+...+. ..+..++..|+. ..+.+.... ...-
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L~~~gfd~~~pt 160 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAALAAAGFDPTAPT 160 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHHHhCCCCCCCCe
Confidence 34799999996554444422111245555544444444455554332 356788888887 332211111 2233
Q ss_pred EEEEcccccC--CcchHHHHHHHHHHhcCCC
Q 046623 127 MVIMSDVFYD--PEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 127 ~Iv~~~~~~~--~~~~~~~l~~~~~lL~~gG 155 (218)
++++-.++.+ .+...+++..+.++..||+
T Consensus 161 l~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs 191 (260)
T TIGR00027 161 AWLWEGLLMYLTEEAVDALLAFIAELSAPGS 191 (260)
T ss_pred eeeecchhhcCCHHHHHHHHHHHHHhCCCCc
Confidence 5555444433 4567889999988888887
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=88.93 E-value=7.7 Score=31.54 Aligned_cols=76 Identities=21% Similarity=0.128 Sum_probs=44.4
Q ss_pred HHHHHhcCCC-CCCCeEEEECCCCCHHHHHHHHhC------CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 42 LAQFISTHFD-FQNKSVLELGAGAGLPGLTAARLG------ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 42 l~~~l~~~~~-~~~~~vLDlG~G~G~~~~~l~~~~------~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
|...+.+... .++..++|+|||.|.++..++..- ...++.+|... -.+ .-..+........+.=+..|+.+
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K-~D~~~~~~~~~~~~~R~riDI~d 84 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK-ADNKIRKDESEPKFERLRIDIKD 84 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc-chhhhhccCCCCceEEEEEEeec
Confidence 4444444222 456699999999999999986442 34789999866 332 22222222211235555566666
Q ss_pred CCccc
Q 046623 114 DDLSQ 118 (218)
Q Consensus 114 ~~~~~ 118 (218)
..+..
T Consensus 85 l~l~~ 89 (259)
T PF05206_consen 85 LDLSK 89 (259)
T ss_pred cchhh
Confidence 65443
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.92 E-value=3.2 Score=34.83 Aligned_cols=91 Identities=8% Similarity=-0.096 Sum_probs=52.6
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH--hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 52 FQNKSVLELGAG-AGLPGLTAAR--LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~--~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.++.+||=+||| .|..++.+++ .++.+++++|.++ .++.++. .+. .... .+. . ....+|+
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~----~~~-~----~~~g~d~ 225 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI----DDI-P----EDLAVDH 225 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh----hhh-h----hccCCcE
Confidence 467899999875 3444444444 3556899999988 7776653 111 1111 010 1 1124888
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
|+= +... ......+....++++++|+++++.
T Consensus 226 viD--~~G~-~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 226 AFE--CVGG-RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred EEE--CCCC-CccHHHHHHHHHhCcCCcEEEEEe
Confidence 883 2221 112456777888999999655554
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.85 E-value=12 Score=30.90 Aligned_cols=128 Identities=15% Similarity=0.114 Sum_probs=64.5
Q ss_pred CCCCeEEEECCCCCH-HHH--HHHHhCCCeEEEecCcc-hHHHHHHHHHHhCC-CCceEEEEeecCCCCccccccCCCCc
Q 046623 52 FQNKSVLELGAGAGL-PGL--TAARLGATRVVLTDVKP-LLPGLINNVEANGL-GGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~-~~~--~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
.+++++|=+|+| |. .++ .++..|+.+++.++.++ ..+.+++..+...- ...+.+...|+.+...- ......+|
T Consensus 124 ~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~-~~~~~~~D 201 (289)
T PRK12548 124 VKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKL-KAEIASSD 201 (289)
T ss_pred cCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHH-HhhhccCC
Confidence 567889999996 42 222 23466776799988874 33333332222110 01233444555432110 00124579
Q ss_pred EEEEcccccCCcchH-HHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEE
Q 046623 127 MVIMSDVFYDPEEMV-GLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIE 186 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~-~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~ 186 (218)
+|+.+-+....+... ..+. -...+.++. ++....+.+....+++.. ++.|.....
T Consensus 202 ilINaTp~Gm~~~~~~~~~~-~~~~l~~~~---~v~D~vY~P~~T~ll~~A-~~~G~~~~~ 257 (289)
T PRK12548 202 ILVNATLVGMKPNDGETNIK-DTSVFRKDL---VVADTVYNPKKTKLLEDA-EAAGCKTVG 257 (289)
T ss_pred EEEEeCCCCCCCCCCCCCCC-cHHhcCCCC---EEEEecCCCCCCHHHHHH-HHCCCeeeC
Confidence 999877665322111 1110 014566655 233333344556777777 888876543
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=88.77 E-value=4.4 Score=27.95 Aligned_cols=83 Identities=24% Similarity=0.189 Sum_probs=47.1
Q ss_pred CCCCHHHHHHH---HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC
Q 046623 62 AGAGLPGLTAA---RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP 137 (218)
Q Consensus 62 ~G~G~~~~~l~---~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~ 137 (218)
||.|..+..++ ..+...++.+|.++ ..+.++.. + +.++.+|..+...-....-.+++.+++... .
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~---~ 72 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERAGIEKADAVVILTD---D 72 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHTTGGCESEEEEESS---S
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhcCccccCEEEEccC---C
Confidence 56666776663 22334899999998 77665533 2 678888887665322223467888887432 1
Q ss_pred cchHHHHHHHHHHhcCCC
Q 046623 138 EEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 138 ~~~~~~l~~~~~lL~~gG 155 (218)
+...-.+....+-+.|..
T Consensus 73 d~~n~~~~~~~r~~~~~~ 90 (116)
T PF02254_consen 73 DEENLLIALLARELNPDI 90 (116)
T ss_dssp HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHCCCC
Confidence 222223333445556655
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=88.49 E-value=2.1 Score=34.37 Aligned_cols=35 Identities=31% Similarity=0.468 Sum_probs=28.0
Q ss_pred CCCCeEEEECCC-CCHHHHHH-HHhCCCeEEEecCcc
Q 046623 52 FQNKSVLELGAG-AGLPGLTA-ARLGATRVVLTDVKP 86 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l-~~~~~~~v~~~D~~~ 86 (218)
++..+|+=+|.| .|.+...+ ++.|..+++.+|.+.
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~ 64 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDD 64 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccc
Confidence 456688889987 88888765 788888999998776
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.73 E-value=11 Score=29.26 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=45.3
Q ss_pred CCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-----cc
Q 046623 53 QNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-----SE 121 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-----~~ 121 (218)
++++||=.|++.| ++..+ ++.|. +|++++.++ ..+.+.+..... .++.++.+|+.+...-. . ..
T Consensus 4 ~~~~vlItGa~g~-iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 4 KGKKVAIIGVSEG-LGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred CCcEEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 5678988888644 33333 44555 899999887 666554444332 24778888887543110 0 01
Q ss_pred CCCCcEEEEccc
Q 046623 122 LGEFDMVIMSDV 133 (218)
Q Consensus 122 ~~~~D~Iv~~~~ 133 (218)
.+.+|.++.+..
T Consensus 79 ~~~id~ii~~ag 90 (238)
T PRK05786 79 LNAIDGLVVTVG 90 (238)
T ss_pred hCCCCEEEEcCC
Confidence 245788886543
|
|
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.73 E-value=11 Score=29.90 Aligned_cols=62 Identities=21% Similarity=0.274 Sum_probs=45.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD 115 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 115 (218)
....-|.+||.|.|.....+...+..+...+|+++ +..-++--.++.. .+..+...|.....
T Consensus 49 ~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 49 LTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRFK 111 (326)
T ss_pred cccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEeccccceeh
Confidence 45667999999999999999888888899999998 7766554444322 34556666665444
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=87.41 E-value=0.99 Score=31.88 Aligned_cols=84 Identities=23% Similarity=0.218 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc---ccCCCCcEEEEcccccCC
Q 046623 63 GAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL---SELGEFDMVIMSDVFYDP 137 (218)
Q Consensus 63 G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~---~~~~~~D~Iv~~~~~~~~ 137 (218)
|.|..++.+++.-..+|+++|.++ ..+.+++. |.. .+ .+..+.... +. .....+|+|+- +..
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga~---~~--~~~~~~~~~~~i~~~~~~~~~d~vid--~~g-- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GAD---HV--IDYSDDDFVEQIRELTGGRGVDVVID--CVG-- 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TES---EE--EETTTSSHHHHHHHHTTTSSEEEEEE--SSS--
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----ccc---cc--ccccccccccccccccccccceEEEE--ecC--
Confidence 346777777655337999999998 77776543 321 22 233333211 11 12247999884 221
Q ss_pred cchHHHHHHHHHHhcCCCceEEEE
Q 046623 138 EEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 138 ~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
-...++...++++++|+++++.
T Consensus 68 --~~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 68 --SGDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp --SHHHHHHHHHHEEEEEEEEEES
T ss_pred --cHHHHHHHHHHhccCCEEEEEE
Confidence 2578888999999999555553
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=86.69 E-value=10 Score=31.57 Aligned_cols=88 Identities=15% Similarity=-0.022 Sum_probs=51.0
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+||=.|+| .|..+..+++ .|+ ++++++.++ ..+.+++ .|... ++. ..+. ..+.+|++
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~~------~~~~~d~~ 227 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAAS---AGG--AYDT------PPEPLDAA 227 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCce---ecc--cccc------CcccceEE
Confidence 567899988874 3334444454 454 799999887 6655543 34321 111 1111 12357876
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+..... ...+....++++++|+++++.
T Consensus 228 i~~~~~------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 228 ILFAPA------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred EECCCc------HHHHHHHHHhhCCCcEEEEEe
Confidence 643321 246777888999999655543
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=86.51 E-value=2 Score=36.98 Aligned_cols=135 Identities=19% Similarity=0.217 Sum_probs=71.3
Q ss_pred CeEEEECCC-CCHH-HHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC--------CCcc---ccc
Q 046623 55 KSVLELGAG-AGLP-GLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS--------DDLS---QLS 120 (218)
Q Consensus 55 ~~vLDlG~G-~G~~-~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~--------~~~~---~~~ 120 (218)
.+|-=+|=| .|.+ +..+++.|. +|+|+|+++ .++....-- ..+..-+... ..+. ...
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~ln~G~--------~~i~e~~~~~~v~~~v~~g~lraTtd~~ 80 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF-KVIGVDINQKKVDKLNRGE--------SYIEEPDLDEVVKEAVESGKLRATTDPE 80 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCC-ceEeEeCCHHHHHHHhCCc--------ceeecCcHHHHHHHHHhcCCceEecChh
Confidence 466666666 4433 223356666 899999999 777653221 1222111110 0000 000
Q ss_pred cCCCCcEEEE-ccccc---CCcc---hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHh-CC------cEEEE
Q 046623 121 ELGEFDMVIM-SDVFY---DPEE---MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMS-QG------FRVIE 186 (218)
Q Consensus 121 ~~~~~D~Iv~-~~~~~---~~~~---~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~-~g------f~~~~ 186 (218)
.....|+++. .+... ...+ .....+.+.+.|++|- ++++-++-..-.+++....+++. .| |.+..
T Consensus 81 ~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~-LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~lay 159 (436)
T COG0677 81 ELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGD-LVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAY 159 (436)
T ss_pred hcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCC-EEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEee
Confidence 1126776653 33332 2233 3555667788889876 55555555555677777777555 33 33333
Q ss_pred EEccCCCCCCCce
Q 046623 187 LTCQLGGGCPEAF 199 (218)
Q Consensus 187 ~~~~~~~~~~~~~ 199 (218)
.|.+..||.....
T Consensus 160 sPERv~PG~~~~e 172 (436)
T COG0677 160 SPERVLPGNVLKE 172 (436)
T ss_pred CccccCCCchhhh
Confidence 4777777765533
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=86.51 E-value=4 Score=33.68 Aligned_cols=86 Identities=19% Similarity=0.119 Sum_probs=49.4
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.++|=+||| .|..++.+++ .|+..+..+|.++ .++.+... . ++ +..+. ....+|+|
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~------~~~g~Dvv 204 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD------PRRDYRAI 204 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc------cCCCCCEE
Confidence 356678888875 4555555554 4665577788776 55544321 1 11 10100 12358988
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+= +... ...++.+.++++++|+++++.
T Consensus 205 id--~~G~----~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 205 YD--ASGD----PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred EE--CCCC----HHHHHHHHHhhhcCcEEEEEe
Confidence 83 2221 346777888999999655543
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.29 E-value=12 Score=29.81 Aligned_cols=75 Identities=24% Similarity=0.327 Sum_probs=44.6
Q ss_pred CeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-----ccCC
Q 046623 55 KSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-----SELG 123 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-----~~~~ 123 (218)
.++|=.| |+|.++..+ ++.|. +|+.++.++ ..+.+.+.+...+ .++.+..+|+.+...-. . ...+
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3566555 445555544 34454 899999887 6666655554443 35778888887653110 0 0124
Q ss_pred CCcEEEEccc
Q 046623 124 EFDMVIMSDV 133 (218)
Q Consensus 124 ~~D~Iv~~~~ 133 (218)
..|.++.+..
T Consensus 78 ~id~vi~~ag 87 (263)
T PRK06181 78 GIDILVNNAG 87 (263)
T ss_pred CCCEEEECCC
Confidence 6899987543
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.27 E-value=13 Score=30.45 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=45.1
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc--hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----c
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP--LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~ 120 (218)
.+++++|=.|++.|. ++..+++.|. +|+.++.++ ..+.....++..+ .++.++.+|+.+...- .. .
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 456788888875553 2333455665 788887764 3444444444333 3477888888764311 11 1
Q ss_pred cCCCCcEEEEccc
Q 046623 121 ELGEFDMVIMSDV 133 (218)
Q Consensus 121 ~~~~~D~Iv~~~~ 133 (218)
....+|+++.+..
T Consensus 121 ~~~~iD~lI~~Ag 133 (290)
T PRK06701 121 ELGRLDILVNNAA 133 (290)
T ss_pred HcCCCCEEEECCc
Confidence 1246899886543
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.25 E-value=5.2 Score=32.47 Aligned_cols=95 Identities=23% Similarity=0.210 Sum_probs=51.0
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC--ccccccCCCCc
Q 046623 52 FQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD--LSQLSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~D 126 (218)
.++.+||=.|+| .|..+..+++ .|..+++.+|.++ ..+.+++ .+.. .++. ..+.. .........+|
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~--~~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT---ALAE--PEVLAERQGGLQNGRGVD 189 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc---EecC--chhhHHHHHHHhCCCCCC
Confidence 467888888775 3333344443 4554589998887 6665543 2322 1111 01110 00001224589
Q ss_pred EEEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+++- +.. ....++.+.++++++|+++++.
T Consensus 190 ~vid--~~G----~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 190 VALE--FSG----ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEEE--CCC----ChHHHHHHHHHhcCCCEEEEec
Confidence 8874 211 1346677788999999555554
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=86.09 E-value=2.4 Score=31.05 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=30.6
Q ss_pred EECCCCC--HHHHHHH--HhC-CCeEEEecCcc-hHHHHHHH--HHHhCCCCceEEEEe
Q 046623 59 ELGAGAG--LPGLTAA--RLG-ATRVVLTDVKP-LLPGLINN--VEANGLGGRVEVREL 109 (218)
Q Consensus 59 DlG~G~G--~~~~~l~--~~~-~~~v~~~D~~~-~~~~a~~~--~~~~~~~~~~~~~~~ 109 (218)
|+|+..| ....... ..+ ..+++++|.++ .++.++.+ +..+.....+++...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~ 59 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPY 59 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEe
Confidence 8999999 4444432 232 35899999999 99999999 666644333555543
|
; PDB: 2PY6_A. |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=85.62 E-value=12 Score=29.11 Aligned_cols=34 Identities=35% Similarity=0.485 Sum_probs=25.9
Q ss_pred CCCCeEEEECCC-CCH-HHHHHHHhCCCeEEEecCc
Q 046623 52 FQNKSVLELGAG-AGL-PGLTAARLGATRVVLTDVK 85 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~ 85 (218)
....+|+=+||| .|. .+..+++.|..+++.+|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 456799999998 343 4455678888899999977
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=84.67 E-value=26 Score=30.53 Aligned_cols=119 Identities=26% Similarity=0.281 Sum_probs=66.7
Q ss_pred CCCCeEEEECCCCCHHHH--HHHHhCCCeEEEecCcc--hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 52 FQNKSVLELGAGAGLPGL--TAARLGATRVVLTDVKP--LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~--~l~~~~~~~v~~~D~~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.++++|+=+|+|....+. .+++.|. +|+++|.++ .++...+.+...+ +.+...+..+. ..+.+|+
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~------~~~~~d~ 71 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEEDQLKEALEELGELG----IELVLGEYPEE------FLEGVDL 71 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcC----CEEEeCCcchh------HhhcCCE
Confidence 356788888887633222 2356676 899999875 3333333333333 44555443321 2356899
Q ss_pred EEEcccccCCcc-hH----------HHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcE
Q 046623 128 VIMSDVFYDPEE-MV----------GLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFR 183 (218)
Q Consensus 128 Iv~~~~~~~~~~-~~----------~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~ 183 (218)
|+.+.-...... .. .-++.+.+..+ ...+.++.+..+..+.+.+..++...|..
T Consensus 72 vv~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~--~~vI~ITGS~GKTTt~~~l~~iL~~~g~~ 136 (450)
T PRK14106 72 VVVSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSK--APIVAITGTNGKTTTTTLLGEIFKNAGRK 136 (450)
T ss_pred EEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcC--CCEEEEeCCCchHHHHHHHHHHHHHcCCC
Confidence 987654322111 11 11122333333 45666666777888889999998777753
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=84.61 E-value=0.29 Score=34.13 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=24.2
Q ss_pred CCcEEEEcccccC------CcchHHHHHHHHHHhcCCC
Q 046623 124 EFDMVIMSDVFYD------PEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 124 ~~D~Iv~~~~~~~------~~~~~~~l~~~~~lL~~gG 155 (218)
+||+|+|-.+.-+ .+-+..+++.+.++|+|||
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG 38 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGG 38 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCC
Confidence 4899998766421 2557889999999999999
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.25 E-value=17 Score=28.16 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=45.5
Q ss_pred CCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----cc
Q 046623 53 QNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----SE 121 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~ 121 (218)
++.++|=.|+ +|.++..+ +..|. +|++++.++ ......+.+... ..+.++.+|+.+...- .. ..
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAA 79 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4567888875 55555554 34455 799999887 666555554432 3478888887654311 00 01
Q ss_pred CCCCcEEEEcc
Q 046623 122 LGEFDMVIMSD 132 (218)
Q Consensus 122 ~~~~D~Iv~~~ 132 (218)
.+.+|.|+.+.
T Consensus 80 ~~~~d~vi~~a 90 (237)
T PRK07326 80 FGGLDVLIANA 90 (237)
T ss_pred cCCCCEEEECC
Confidence 24789988654
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=83.81 E-value=6.6 Score=32.47 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=57.1
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-----ccc-cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-----SQL-SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~-~~ 121 (218)
..+..||==|+|+|. +++.+++.|+ ++..+|+++ ..+...+.++..| .+....+|+.+... .++ +.
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHh
Confidence 567889988988884 5666788887 899999999 7777777766665 47888888876531 111 24
Q ss_pred CCCCcEEEEcccc
Q 046623 122 LGEFDMVIMSDVF 134 (218)
Q Consensus 122 ~~~~D~Iv~~~~~ 134 (218)
-+..|+++.|.-+
T Consensus 112 ~G~V~ILVNNAGI 124 (300)
T KOG1201|consen 112 VGDVDILVNNAGI 124 (300)
T ss_pred cCCceEEEecccc
Confidence 4788999876543
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=83.74 E-value=4.9 Score=33.12 Aligned_cols=95 Identities=19% Similarity=0.129 Sum_probs=52.5
Q ss_pred CCCCeEEEECCC-CCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc--ccccCCCCcE
Q 046623 52 FQNKSVLELGAG-AGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS--QLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~D~ 127 (218)
.++.+||..|+| .|...+.+++.-..+++.++.++ ..+.+++ .+.. .+.......... .......+|+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~----~~~~~~~~~~~~~~~~~~~~~~D~ 235 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGAD----EVLNSLDDSPKDKKAAGLGGGFDV 235 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC----EEEcCCCcCHHHHHHHhcCCCceE
Confidence 456788888765 35555556644334799999887 6665533 3321 111111111100 0113456898
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
++-.- . ....++.+.++|+++|.++.+
T Consensus 236 vid~~--g----~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 236 IFDFV--G----TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred EEECC--C----CHHHHHHHHHHhhcCCEEEEE
Confidence 87421 1 145777888999999954444
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.56 E-value=20 Score=28.29 Aligned_cols=78 Identities=21% Similarity=0.353 Sum_probs=49.3
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-c----c-c
Q 046623 52 FQNKSVLELGAGAGLPGLT----AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-Q----L-S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~----l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~----~-~ 120 (218)
.+++++|=.|++.| ++.. +++.|. +|+.++.++ ..+.+.+.++..+ .++.++.+|+.+...- . . .
T Consensus 9 ~~~k~ilItGas~~-IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 9 LAGQVALVTGSARG-LGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 56778888886544 3443 345565 899999887 6666666555544 3478888888765321 1 0 1
Q ss_pred cCCCCcEEEEccc
Q 046623 121 ELGEFDMVIMSDV 133 (218)
Q Consensus 121 ~~~~~D~Iv~~~~ 133 (218)
..+++|.++.+..
T Consensus 85 ~~~~id~vi~~ag 97 (256)
T PRK06124 85 EHGRLDILVNNVG 97 (256)
T ss_pred hcCCCCEEEECCC
Confidence 2257899987544
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=83.10 E-value=20 Score=29.41 Aligned_cols=121 Identities=17% Similarity=0.095 Sum_probs=64.6
Q ss_pred CCCCeEEEECCCCCHHHH--HHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGL--TAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~--~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
..+++|+=+|||.-.-+. .++..|..+++.+|.+. ..+...+.+.... ....+.. +.+... ....+|+|
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~--~~~~~~~--~~~~~~----~~~~aDiV 196 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF--PAARATA--GSDLAA----ALAAADGL 196 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC--CCeEEEe--ccchHh----hhCCCCEE
Confidence 566799999998433333 33567777899999987 5555554443321 1122222 111110 12458999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIE 186 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~ 186 (218)
+..-+.........-+. ...++++. ++....+.+....+++.. ++.|..+..
T Consensus 197 InaTp~Gm~~~~~~~~~--~~~l~~~~---~v~DivY~P~~T~ll~~A-~~~G~~~~~ 248 (284)
T PRK12549 197 VHATPTGMAKHPGLPLP--AELLRPGL---WVADIVYFPLETELLRAA-RALGCRTLD 248 (284)
T ss_pred EECCcCCCCCCCCCCCC--HHHcCCCc---EEEEeeeCCCCCHHHHHH-HHCCCeEec
Confidence 87655442111110011 13566654 232333344556778887 888877543
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.83 E-value=11 Score=30.08 Aligned_cols=78 Identities=23% Similarity=0.276 Sum_probs=47.2
Q ss_pred CCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-h-HHHHHHHHHHhCCCCceEEEEeecCCCCc-----ccccc
Q 046623 53 QNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-L-LPGLINNVEANGLGGRVEVRELVWGSDDL-----SQLSE 121 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~-~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~~ 121 (218)
.+++||=.|+..| ++..+ ++.|..+|+.++.++ . .+.+.+.++..+. .++.++.+|+.+... +....
T Consensus 7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHHh
Confidence 3557888887554 44433 444434899988876 4 6666555555432 248888899876441 11112
Q ss_pred CCCCcEEEEcc
Q 046623 122 LGEFDMVIMSD 132 (218)
Q Consensus 122 ~~~~D~Iv~~~ 132 (218)
.+..|+++.+.
T Consensus 85 ~g~id~li~~a 95 (253)
T PRK07904 85 GGDVDVAIVAF 95 (253)
T ss_pred cCCCCEEEEee
Confidence 25799888654
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.82 E-value=9.6 Score=30.15 Aligned_cols=80 Identities=23% Similarity=0.336 Sum_probs=50.3
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~ 121 (218)
.+++++|=.|++.|. ++..+++.|. +|+.++.++ ..+...+.+...+ .++.++.+|+.+...- .. ..
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 457789988876653 2333455666 899999887 7766666655444 3477788887654311 10 11
Q ss_pred CCCCcEEEEcccc
Q 046623 122 LGEFDMVIMSDVF 134 (218)
Q Consensus 122 ~~~~D~Iv~~~~~ 134 (218)
.++.|+++.+...
T Consensus 84 ~g~id~lv~~ag~ 96 (253)
T PRK05867 84 LGGIDIAVCNAGI 96 (253)
T ss_pred hCCCCEEEECCCC
Confidence 2579999976543
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=82.61 E-value=5.4 Score=33.63 Aligned_cols=94 Identities=18% Similarity=0.115 Sum_probs=51.4
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-ccc---ccCCC
Q 046623 52 FQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQL---SELGE 124 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~---~~~~~ 124 (218)
.++.+||=.|+| .|..++.+++ .|..+|+++|.++ ..+.+++ .+.. .++. ..+... ... .....
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~---~~i~--~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT---HTVN--SSGTDPVEAIRALTGGFG 245 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEEc--CCCcCHHHHHHHHhCCCC
Confidence 467888888864 2334444454 3554699999887 6666643 3321 1221 111111 111 12235
Q ss_pred CcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 125 FDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+|+|+- +... ...+....++++++|+++++
T Consensus 246 ~d~vid--~~g~----~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 246 ADVVID--AVGR----PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCEEEE--CCCC----HHHHHHHHHHhccCCEEEEE
Confidence 898873 3222 24566677899999955554
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=82.46 E-value=4.2 Score=32.10 Aligned_cols=95 Identities=28% Similarity=0.275 Sum_probs=53.3
Q ss_pred CCCCeEEEECCCC-CHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc---cccCCCCc
Q 046623 52 FQNKSVLELGAGA-GLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ---LSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~~D 126 (218)
.++.+||-.|+|+ |.....+++....++++++.++ ..+.++. .+.. .+. +........ ......+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~--~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE----LGAD---HVI--DYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----hCCc---eec--cCCcCCHHHHHHHhcCCCCC
Confidence 5678999999886 4444444544335899999887 6655532 2211 111 111111100 01235799
Q ss_pred EEEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+++..-. . ...+..+.+.++++|.++.+.
T Consensus 204 ~vi~~~~--~----~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 204 VVIDAVG--G----PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEEECCC--C----HHHHHHHHHhcccCCEEEEEc
Confidence 9985321 1 145677788999999554443
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >KOG3350 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.46 E-value=20 Score=27.49 Aligned_cols=99 Identities=13% Similarity=0.105 Sum_probs=58.5
Q ss_pred CCCCeEEEECCCCCHHHHHHH--HhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAA--RLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~--~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..+.+|.-+.|-+=..-.... ..+..+|...+.+. +++..| -+|+.-|......-.......||+|+
T Consensus 72 ~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDk-------RFe~yg----~eFvfYDyN~p~dlp~~lk~~fdiiv 140 (217)
T KOG3350|consen 72 GEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDK-------RFELYG----TEFVFYDYNCPLDLPDELKAHFDIIV 140 (217)
T ss_pred ccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehh-------hHHhcc----ceeEEeccCCCCCCHHHHHhcccEEE
Confidence 345678888775533111111 12345788888654 333433 35555555443321112346799999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
+.+|+.+.+-..+.-..+..+.+++- .+++++
T Consensus 141 aDPPfL~~eCl~Kts~tik~L~r~~~-kvilCt 172 (217)
T KOG3350|consen 141 ADPPFLSEECLAKTSETIKRLQRNQK-KVILCT 172 (217)
T ss_pred eCCccccchhhhhhHHHHHHHhcCCc-eEEEec
Confidence 99999887777777778888888876 344444
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=82.32 E-value=21 Score=30.16 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=45.2
Q ss_pred CCCCeEEEECCC-CCH-HHHHHHHhCCCeEEEecCcc----------------------hHHHHHHHHHHhCCCCceEEE
Q 046623 52 FQNKSVLELGAG-AGL-PGLTAARLGATRVVLTDVKP----------------------LLPGLINNVEANGLGGRVEVR 107 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~~----------------------~~~~a~~~~~~~~~~~~~~~~ 107 (218)
.+..+||=+||| .|. .+..+++.|..+++.+|.+. ..+.+++.+.+.+-...++.+
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 456799999998 343 44456788888999999762 234444555554433234444
Q ss_pred EeecCCCCccccccCCCCcEEEE
Q 046623 108 ELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 108 ~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
..++....... ....+|+|+.
T Consensus 102 ~~~~~~~~~~~--~~~~~DlVid 122 (338)
T PRK12475 102 VTDVTVEELEE--LVKEVDLIID 122 (338)
T ss_pred eccCCHHHHHH--HhcCCCEEEE
Confidence 44443222111 2356999986
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.24 E-value=8.4 Score=30.61 Aligned_cols=81 Identities=22% Similarity=0.245 Sum_probs=49.8
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~ 121 (218)
.+++++|=.|+..|. ++..+++.|. +|+.++.++ ..+...+.+...+...++.++.+|+.+...- .. ..
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 456788888876553 2233455665 899999888 7776666655422224477888888765311 11 11
Q ss_pred CCCCcEEEEccc
Q 046623 122 LGEFDMVIMSDV 133 (218)
Q Consensus 122 ~~~~D~Iv~~~~ 133 (218)
.+.+|.++.+..
T Consensus 84 ~g~id~li~~ag 95 (260)
T PRK07063 84 FGPLDVLVNNAG 95 (260)
T ss_pred hCCCcEEEECCC
Confidence 257899987543
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.53 E-value=27 Score=29.27 Aligned_cols=78 Identities=29% Similarity=0.322 Sum_probs=49.1
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-----c
Q 046623 52 FQNKSVLELGAGAGLPGLT----AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~----l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-----~ 120 (218)
.++++||=.|+..| ++.. +++.|. +|+.++.++ .++...+.++..+ .++.++.+|+.+...-. . .
T Consensus 6 l~~k~vlITGas~g-IG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~ 81 (334)
T PRK07109 6 IGRQVVVITGASAG-VGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEE 81 (334)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 34567877776554 3333 355565 899999888 7776666665544 34778888887653211 1 1
Q ss_pred cCCCCcEEEEccc
Q 046623 121 ELGEFDMVIMSDV 133 (218)
Q Consensus 121 ~~~~~D~Iv~~~~ 133 (218)
..+++|+++.+..
T Consensus 82 ~~g~iD~lInnAg 94 (334)
T PRK07109 82 ELGPIDTWVNNAM 94 (334)
T ss_pred HCCCCCEEEECCC
Confidence 2357999987544
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=81.23 E-value=6 Score=33.55 Aligned_cols=94 Identities=26% Similarity=0.238 Sum_probs=51.1
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC-ccccc--cCCCC
Q 046623 52 FQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD-LSQLS--ELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~--~~~~~ 125 (218)
.++.+||=.|+| .|..+..+++ .|+.+|+++|.++ ..+.+++ .+.. .++. ..+.. .+... ..+.+
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~--~~~~~~~~~i~~~~~~g~ 260 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT---ATVN--AGDPNAVEQVRELTGGGV 260 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc---eEeC--CCchhHHHHHHHHhCCCC
Confidence 457788888865 3334444454 4554799999888 6666543 3322 1221 11111 11110 12368
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|+|+- +... ...+....++++++|+++.+
T Consensus 261 d~vid--~~G~----~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 261 DYAFE--MAGS----VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred CEEEE--CCCC----hHHHHHHHHHHhcCCEEEEE
Confidence 98883 2211 34566777899999955544
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=81.17 E-value=7.5 Score=32.30 Aligned_cols=95 Identities=25% Similarity=0.216 Sum_probs=50.1
Q ss_pred CCCCeEEEECCC-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc---ccCCCC
Q 046623 52 FQNKSVLELGAG-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL---SELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~ 125 (218)
.++.+||=.|+| .|..+..++ ..|+.++++++.++ ..+.+++ .+.. .++. ..+...... .....+
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~---~~i~--~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGAD---FVIN--SGQDDVQEIRELTSGAGA 232 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEEc--CCcchHHHHHHHhCCCCC
Confidence 457788888764 233333344 34554499999887 6555532 3322 1111 111111111 122369
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
|+++- +.. ....+....++|+++|+++++.
T Consensus 233 d~vid--~~g----~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 233 DVAIE--CSG----NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CEEEE--CCC----CHHHHHHHHHHhhcCCEEEEEc
Confidence 98884 211 1345566778999999555543
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.13 E-value=2.7 Score=37.04 Aligned_cols=107 Identities=11% Similarity=-0.042 Sum_probs=63.0
Q ss_pred CCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCC-CCceEEEEeecCCCCcccc---ccCCCCcE
Q 046623 54 NKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGL-GGRVEVRELVWGSDDLSQL---SELGEFDM 127 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~-~~~~~~~~~d~~~~~~~~~---~~~~~~D~ 127 (218)
+..+|-+|-|+|.+...+. ..+..++++++++| +++.+.+++....- ..+++...+ .+...+.. .....||+
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dG--l~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADG--LDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhc--hHHHHHHhhccccccCCcE
Confidence 4568888888898888884 45557999999999 99999988743321 112222211 11111001 13457999
Q ss_pred EEEc---ccccCC------cchHHHHHHHHHHhcCCCceEEEEE
Q 046623 128 VIMS---DVFYDP------EEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 128 Iv~~---~~~~~~------~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
+... ...+.. .-...++..+...|.|.|.+++-..
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv 417 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLV 417 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEe
Confidence 8852 112211 1135566777889999994433333
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=80.93 E-value=12 Score=33.48 Aligned_cols=95 Identities=25% Similarity=0.358 Sum_probs=53.3
Q ss_pred CCCCeEEEECCC-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC-------------C
Q 046623 52 FQNKSVLELGAG-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD-------------D 115 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~-------------~ 115 (218)
.++.+|+=+|+| .|..+..++ ..|+ .|+.+|.++ ..+.++. .+ .+++..|..+. .
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~----lG----a~~v~v~~~e~g~~~~gYa~~~s~~ 232 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS----MG----AEFLELDFKEEGGSGDGYAKVMSEE 232 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cC----CeEEeccccccccccccceeecCHH
Confidence 456899999998 555555555 4455 799999998 7665553 22 22333232110 0
Q ss_pred cc-----cc-ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 116 LS-----QL-SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 116 ~~-----~~-~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
.. .. ..-..+|+|+..-.+.....+.=+.+...+.+|||+
T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGs 278 (511)
T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGS 278 (511)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCC
Confidence 00 00 012469999764322222222335667788899987
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.72 E-value=25 Score=27.51 Aligned_cols=105 Identities=21% Similarity=0.284 Sum_probs=55.5
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc--hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-----
Q 046623 52 FQNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP--LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L----- 119 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~----- 119 (218)
.+++++|=.|+..| ++..+ ++.|. +|++++.+. ..+.+...++..+ .++.++.+|+.+...-. .
T Consensus 4 ~~~k~vlItGasgg-iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 79 (248)
T PRK07806 4 LPGKTALVTGSSRG-IGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAR 79 (248)
T ss_pred CCCcEEEEECCCCc-HHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHH
Confidence 45678888886544 44443 44455 788877653 3444443333333 34677888887653211 1
Q ss_pred ccCCCCcEEEEcccccCC-------------cchHHHHHHHHHHhcCCCceEEE
Q 046623 120 SELGEFDMVIMSDVFYDP-------------EEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~~~~-------------~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
...+..|+++.+...... .....+++.+.+.++.+|.++++
T Consensus 80 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 80 EEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred HhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 011468988865432110 01334566666666666644444
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=80.43 E-value=15 Score=28.85 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=25.9
Q ss_pred CCCCeEEEECCC-CCH-HHHHHHHhCCCeEEEecCc
Q 046623 52 FQNKSVLELGAG-AGL-PGLTAARLGATRVVLTDVK 85 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~ 85 (218)
.+..+|+=+||| .|. .+..+++.|..+++.+|.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 456799999998 454 4445678888889998877
|
|
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=80.34 E-value=2.2 Score=34.19 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=29.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHH
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVE 96 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~ 96 (218)
+..+++|+.||+|.++..+... ...++.-|+++ .....+..++
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhccc-ccceeeeechHHHHHHHHHHHh
Confidence 6779999999999999988664 44899999999 5555443433
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=80.14 E-value=7.5 Score=27.99 Aligned_cols=75 Identities=27% Similarity=0.335 Sum_probs=44.0
Q ss_pred CCCCCeEEEECCCC-C-HHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 51 DFQNKSVLELGAGA-G-LPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 51 ~~~~~~vLDlG~G~-G-~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
+.+++++|=+|+|. | .....++..|+.+++.+..+. -.+...+.+ .+ ..+.+.. +.+... ....+|+
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--~~--~~~~~~~--~~~~~~----~~~~~Di 78 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--GG--VNIEAIP--LEDLEE----ALQEADI 78 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--TG--CSEEEEE--GGGHCH----HHHTESE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--Cc--cccceee--HHHHHH----HHhhCCe
Confidence 46788999999973 2 233334667887899998886 554444444 11 1244443 322221 2357999
Q ss_pred EEEccccc
Q 046623 128 VIMSDVFY 135 (218)
Q Consensus 128 Iv~~~~~~ 135 (218)
|+...+..
T Consensus 79 vI~aT~~~ 86 (135)
T PF01488_consen 79 VINATPSG 86 (135)
T ss_dssp EEE-SSTT
T ss_pred EEEecCCC
Confidence 99765543
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=80.05 E-value=2.3 Score=31.70 Aligned_cols=117 Identities=17% Similarity=0.195 Sum_probs=59.7
Q ss_pred eEEEECCCCC--HHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 56 SVLELGAGAG--LPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 56 ~vLDlG~G~G--~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
+|-=||.|.- ..+..+.+.|. .|+..|.++ ..+.+.+. + .... +... + .....|+|++.-
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~----g----~~~~-----~s~~-e--~~~~~dvvi~~v 65 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA----G----AEVA-----DSPA-E--AAEQADVVILCV 65 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT----T----EEEE-----SSHH-H--HHHHBSEEEE-S
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh----h----hhhh-----hhhh-h--HhhcccceEeec
Confidence 3444666532 22333455565 899999987 66554432 2 2222 1111 1 123469998732
Q ss_pred cccCCcchHHHHHH--HHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCC
Q 046623 133 VFYDPEEMVGLGKT--LKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGG 193 (218)
Q Consensus 133 ~~~~~~~~~~~l~~--~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~ 193 (218)
+ +....++++.. +...+++|. +++-+++.......+..+.+ ...|....+.|+.-.+
T Consensus 66 ~--~~~~v~~v~~~~~i~~~l~~g~-iiid~sT~~p~~~~~~~~~~-~~~g~~~vdapV~Gg~ 124 (163)
T PF03446_consen 66 P--DDDAVEAVLFGENILAGLRPGK-IIIDMSTISPETSRELAERL-AAKGVRYVDAPVSGGP 124 (163)
T ss_dssp S--SHHHHHHHHHCTTHGGGS-TTE-EEEE-SS--HHHHHHHHHHH-HHTTEEEEEEEEESHH
T ss_pred c--cchhhhhhhhhhHHhhccccce-EEEecCCcchhhhhhhhhhh-hhccceeeeeeeeccc
Confidence 2 22445566665 666666655 44444444334455555555 8899999998876443
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281 | Back alignment and structure |
|---|
Score = 118 bits (296), Expect = 1e-32
Identities = 39/182 (21%), Positives = 66/182 (36%), Gaps = 21/182 (11%)
Query: 24 SVTGRPLTGAWLWDSALILAQFISTH-FDFQNKSVLELGAGAGLPGLTAARLGATRVVLT 82
+ PL + +W A LA + K+V ELGAGAGL + A GA +VV T
Sbjct: 49 TTQEHPLWTSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVAT 108
Query: 83 DV--KPLLPGLINNVEANGL---------GGRVEVRELVWGSD--DLSQLSELGEFDMVI 129
D +L L +N+ + +V WG L + + L F +V+
Sbjct: 109 DYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVL 168
Query: 130 MSDVFYDPEEMVGLGKTLKRVC---GTGRHTVVWAVSEVRTR----TGDCLHELIMSQGF 182
++D+ + L +++K + V L+ + G
Sbjct: 169 LADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGA 228
Query: 183 RV 184
+
Sbjct: 229 LI 230
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 8e-08
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEV 106
F+ K+VL++G G+G+ + +A+ GA +V + + V+AN L VEV
Sbjct: 61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEV 116
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 1e-07
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 49 HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEV 106
H DF++K VL++G G+G+ AA+ GA ++ + + V++N L R+ V
Sbjct: 46 HTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVV 103
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 2e-07
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEV 106
F++K VL++G+G G+ + AA+ GA +V+ + + + V+AN L V +
Sbjct: 64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTI 119
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 2e-07
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEV 106
F++K VL++G G G+ + AA+ GA +V+ D +L ++ + N L + +
Sbjct: 62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITL 117
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 2e-07
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 49 HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEV 106
H DF++K VL++G G+G+ AA+ GA ++ + + V++N L R+ V
Sbjct: 154 HTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVV 211
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-07
Identities = 18/103 (17%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 39 ALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLIN-NVEA 97
A++LA+F + +++L +G G+ L + ++V +++ L + +V
Sbjct: 37 AVLLAKFSYL--PIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAY 94
Query: 98 NGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEM 140
N L ++E+ E ++ L D+V + ++ +
Sbjct: 95 NQLEDQIEIIEYDL--KKITDLIPKERADIVTCNPPYFATPDT 135
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Length = 328 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 8e-07
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 49 HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEV 106
F++K VL++G G G+ + AA+ GA V+ D+ ++ VE NG ++ +
Sbjct: 34 KDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITL 91
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 1e-06
Identities = 32/139 (23%), Positives = 51/139 (36%), Gaps = 13/139 (9%)
Query: 50 FDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDV-KPLLPGLINNVEANGLGGRVEVRE 108
D + K V +LGAG G+ A LGA V+ +V K + LI N+ G+ +V
Sbjct: 46 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGE--FKGKFKVFI 103
Query: 109 LVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTR 168
+ D+VIM+ F + LK VV+++ +
Sbjct: 104 GDVSEFN-------SRVDIVIMNPPFGSQRKHADRPFLLK---AFEISDVVYSIHLAKPE 153
Query: 169 TGDCLHELIMSQGFRVIEL 187
+ + GF V
Sbjct: 154 VRRFIEKFSWEHGFVVTHR 172
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-06
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 11/110 (10%)
Query: 39 ALILAQFISTHFDFQNKSVLELGAGAGLPGLT-AARLGATRVVLTDVKPLLPGL----IN 93
A++LA ++ + + +LGAGAG G+ AARL V L + + +
Sbjct: 25 AMLLASLVADD---RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLE 81
Query: 94 NVEANGLGGRVEVRE---LVWGSDDLSQLSELGEFDMVIMSDVFYDPEEM 140
+ R+EV E + + F VIM+ + D +
Sbjct: 82 LPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDR 131
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 6e-06
Identities = 25/183 (13%), Positives = 52/183 (28%), Gaps = 30/183 (16%)
Query: 33 AWLWDSALILAQFISTHFDFQN-KSVLELGAGAG-LPGLTAARLGATRVVLTDVKPLLPG 90
+ + + +S F ++V++L G G R + D+
Sbjct: 158 DAMVRLSQPMVDVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDA 217
Query: 91 LINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYD--PEEMVGLGKTLK 148
+ A+ LGGRVE E + ++ E G D+V+++D + E +
Sbjct: 218 ARKTIHAHDLGGRVEFFE---KNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAA 274
Query: 149 RVC----------------GTGRHTVVW-------AVSEVRTRTGDCLHELIMSQGFRVI 185
+ + + ++ G V
Sbjct: 275 GLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVG 334
Query: 186 ELT 188
E +
Sbjct: 335 ERS 337
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-05
Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 53 QNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELV 110
Q +L++G+ + G + +V + NVEA+GL +++VR
Sbjct: 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRL-- 72
Query: 111 WGSDDLSQLSELGEFDMVIMS 131
++ L+ E + ++ ++
Sbjct: 73 --ANGLAAFEETDQVSVITIA 91
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 2e-05
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 38 SALILAQF--ISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPL-LPGLINN 94
S L+L + + VL+LGAG G L AR+GA VV + + L
Sbjct: 216 SLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKG 274
Query: 95 VEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130
+EAN L + + SD L+E FD+++
Sbjct: 275 LEANALKAQA-----LH-SDVDEALTEEARFDIIVT 304
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-05
Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 12/107 (11%)
Query: 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELV 110
+ + ++G G G + A +V D + N +GL RV
Sbjct: 45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIV-- 102
Query: 111 WGSDDLSQLS-ELGEFDMVIMSDVFY--DPEEMVGLGKTLKRVCGTG 154
+ L E D++ Y E + ++ G
Sbjct: 103 ---GSMDDLPFRNEELDLIWSEGAIYNIGFERGL---NEWRKYLKKG 143
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 4e-05
Identities = 23/212 (10%), Positives = 57/212 (26%), Gaps = 80/212 (37%)
Query: 11 NSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLT 70
N +++ L NV + A W++ F+ K +L LT
Sbjct: 245 NCLLV--LLNVQN---------AKAWNA-----------FNLSCK-IL----------LT 271
Query: 71 AARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130
TR + + + + + + L+ +
Sbjct: 272 ------TR----FKQ------VTDFLSAATTTHISLDHHSMT---LTPDEVKSLLLKYLD 312
Query: 131 SDVFYDPEEMVG--------LGKTLKRVCGTG---RHTVVWAVSEVRTRTGDCLHELIMS 179
P E++ + ++++ T +H ++ + + + L
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 180 QGFRVIELTCQLGGGCPEAFAVYE---LIPPM 208
+ F + +V+ IP +
Sbjct: 373 KMF--------------DRLSVFPPSAHIPTI 390
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 5e-05
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELV 110
+ +++LG G G A GA+ V+ D L ++ A G +
Sbjct: 41 EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLD---LSEKMLARARAAGPDTGITYERA- 96
Query: 111 WGSDDLSQLS-ELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159
DL +L FD+ S + E++ L +T+ + G H V
Sbjct: 97 ----DLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVF 142
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 5e-05
Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 7/107 (6%)
Query: 32 GAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGL 91
GA + + Q + VL+LG G G A G V D L
Sbjct: 31 GAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGI-EAVGVD---GDRTL 86
Query: 92 INNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPE 138
++ A G G + +++ ++D++ + +
Sbjct: 87 VDAARAAGAGEVHLAS---YAQLAEAKVPVGKDYDLICANFALLHQD 130
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 6e-05
Identities = 14/86 (16%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 53 QNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELV 110
+ +L++G+ + ++G + +V + NV +GL +++VR
Sbjct: 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRL-- 78
Query: 111 WGSDDLSQLSELGEFDMVIMSDVFYD 136
++ LS E D + + +
Sbjct: 79 --ANGLSAFEEADNIDTITICGMGGR 102
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 6e-05
Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELV 110
DF K+VL+LG G G + AA GA +V+ D L ++ + V +
Sbjct: 42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGID---LSERMLTEAKRKTTSPVVCYEQ-- 96
Query: 111 WGSDDLSQLSELGE-FDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159
+ ++ + +++V+ S + + K + + +
Sbjct: 97 ---KAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIF 143
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 7e-05
Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 16/106 (15%)
Query: 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLIN----NVE 96
I+A+ I F + +++G+G G + A+ + D + N+
Sbjct: 31 IIAENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALD---FSKHMNEIALKNIA 87
Query: 97 ANGLGGRVEVRELVWGSDDLSQLS-ELGEFDMVIMSDVFY---DPE 138
L R+++ + D+ + E D+++ + D
Sbjct: 88 DANLNDRIQIVQ-----GDVHNIPIEDNYADLIVSRGSVFFWEDVA 128
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 8e-05
Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 53 QNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKPL-LPGLINNVEANGLGGRVEVRELV 110
+N+ + ++G+ A + A+ + +V V ++GL +++VR+
Sbjct: 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRK-- 78
Query: 111 WGSDDLSQLSELGEFDMVI 129
+ L+ + + D ++
Sbjct: 79 --GNGLAVIEKKDAIDTIV 95
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 1e-04
Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 11/105 (10%)
Query: 56 SVLELGAGAGLPGLTAARLGAT--RVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWG 112
V + G L ++V D P L G + L G++ +
Sbjct: 121 VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHR---- 176
Query: 113 SDDLSQLSELGEFDMVIMSDVFY---DPEEMVGLGKTLKRVCGTG 154
D +L +D++ + + D + L + + G
Sbjct: 177 -QDAWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPG 220
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 14/104 (13%)
Query: 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDV-KPLLPGLINNVEANGLGGRVEVRELVW 111
VL++ G + AA GA V+ D + N + NG+ R++
Sbjct: 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIV--- 273
Query: 112 GSDDLSQLSELGE----FDMVIMSDVFYDPEEMVGLGKTLKRVC 151
++ +L + FD+V++ DP V K LK
Sbjct: 274 -GSAFEEMEKLQKKGEKFDIVVL-----DPPAFVQHEKDLKAGL 311
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 3e-04
Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 18/106 (16%)
Query: 49 HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVE-ANGLGGRVEVR 107
H + K VL++G +G G G RV + P E A V +
Sbjct: 28 HIKKEWKEVLDIGCSSGALGAAIKENGT-RVSGIEAFP------EAAEQAKEKLDHVVLG 80
Query: 108 ELVWGSDDLSQLSELGEFDMVIMSDVF---YDPEEMVGLGKTLKRV 150
++ + + E +FD VI DV +DP ++ + +K
Sbjct: 81 DI----ETMDMPYEEEQFDCVIFGDVLEHLFDPWAVI---EKVKPY 119
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 3e-04
Identities = 27/188 (14%), Positives = 49/188 (26%), Gaps = 35/188 (18%)
Query: 38 SALILAQFISTHFDFQN-KSVLELGAGAG-LPGLTAARLGATRVVLTDVKPLLPGLINNV 95
+ + K +L++G G V + D+ L +
Sbjct: 163 YSDQSFGKALEIVFSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQT 222
Query: 96 EANGLGGRVEVRELVWGSDDLSQLSELGE-FDMVIMSDVFYD--PEEMVGLGKTLKRVCG 152
R+ G++ L + FD V MS EE++ + + + G
Sbjct: 223 AGLSGSERIHGH----GANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIG 278
Query: 153 TG--------------------------RHTVVWAVSEVRTRTGDCLHELIMSQGFRVIE 186
+ A + D L I + G V E
Sbjct: 279 KDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEE 338
Query: 187 LTCQLGGG 194
+ +G G
Sbjct: 339 IQDNIGLG 346
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 5e-04
Identities = 22/168 (13%), Positives = 42/168 (25%), Gaps = 28/168 (16%)
Query: 53 QNKSVLELGAGAGLPGLTAARLGATRVV-LTDVKPLLPGLINNVEANGLGGRVEVRELVW 111
+ + ++G G G L A ++ + + N RV+
Sbjct: 46 DDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGIT--- 102
Query: 112 GSDDLSQLS-ELGEFDMVIMSDVFYDPEEMVGLGKTLK---RVCGTGRHTVVWAVSEVRT 167
+ L + E D++ Y +G + + + G V
Sbjct: 103 --GSMDNLPFQNEELDLIWSEGAIY----NIGFERGMNEWSKYLKKGGFIAV-------- 148
Query: 168 RTGDCLHELIMSQGFRVIELTCQLGGGCPEAFAVYELIPPMHEENFHV 215
E R E+ PE + I M +
Sbjct: 149 ------SEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTP 190
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205 | Back alignment and structure |
|---|
Score = 38.7 bits (91), Expect = 5e-04
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 49 HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPL-LPGLINNVEANGLGGRVEVR 107
+ +V ++G G+G+ + A +LGA V+ TD+ + N NG+
Sbjct: 56 RAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIA--- 112
Query: 108 ELVWGSDDLSQLSELGEFDMVI 129
+ + L+ + G+FD+++
Sbjct: 113 --LQKTSLLADVD--GKFDLIV 130
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 6e-04
Identities = 12/93 (12%), Positives = 29/93 (31%), Gaps = 13/93 (13%)
Query: 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVW 111
F+ ++LELG+ G + + I++ + G +
Sbjct: 41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVE---ASEEAISHAQGRLKDG-ITYIH--- 92
Query: 112 GSDDLSQLSELGEFDMVIMSDVF---YDPEEMV 141
+D ++++ V DP ++
Sbjct: 93 --SRFEDAQLPRRYDNIVLTHVLEHIDDPVALL 123
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 38.4 bits (90), Expect = 6e-04
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 54 NKSVLELGAGAGLPGLTAARLGATRVVLTDVKPL-LPGLINNVEANGLGG-RVEVRELVW 111
+ +L+LG G G+ G+ A + D+ + N++ N L + V
Sbjct: 53 DDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVH--- 108
Query: 112 GSDDLSQLSELGEFDMVIM 130
SD + + +++ +I
Sbjct: 109 -SDLYENVKD-RKYNKIIT 125
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200 | Back alignment and structure |
|---|
Score = 38.1 bits (88), Expect = 8e-04
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPL-LPGLINNVEANGL 100
+ +SV++ G G G+ + LGA V D+ P + N
Sbjct: 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNF 99
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 8e-04
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 45 FISTHFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKPL-LPGLINNVEANGLGG 102
F+ + +++LG G G+ GLT +VV D P+ + NVE N
Sbjct: 214 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA 273
Query: 103 RVEVRELVWGSDDLSQLSELGEFDMVIM 130
++ LS + F+ V+
Sbjct: 274 LDRCE--FMINNALSGVEP-FRFNAVLC 298
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 218 | |||
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.84 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.8 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.75 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.74 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.73 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.73 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.73 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.72 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.72 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.72 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.72 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.71 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.71 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.7 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.7 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.7 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.7 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.7 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.7 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.7 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.69 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.69 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.69 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.69 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.69 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.69 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.69 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.68 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.68 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.68 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.68 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.68 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.67 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.67 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.67 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.67 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.66 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.66 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.66 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.66 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.66 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.66 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.65 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.65 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.65 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.64 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.64 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.64 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.64 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.63 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.63 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.63 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.63 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.63 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.63 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.62 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.62 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.62 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.62 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.62 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.62 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.62 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.62 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.62 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.61 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.61 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.61 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.61 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.61 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.61 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.6 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.6 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.6 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.59 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.59 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.59 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.59 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.59 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.58 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.58 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.58 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.58 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.58 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.58 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.58 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.58 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.58 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.58 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.57 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.57 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.57 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.57 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.57 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.57 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.57 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.57 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.57 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.57 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.57 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.57 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.56 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.56 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.56 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.56 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.56 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.55 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.55 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.55 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.55 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.55 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.55 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.54 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.54 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.54 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.54 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.54 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.53 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.53 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.53 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.53 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.53 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.53 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.53 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.53 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.53 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.53 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.53 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.53 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.52 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.52 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.52 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.52 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.52 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.51 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.51 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.51 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.51 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.51 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.51 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.51 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.51 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.5 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.5 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.5 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.5 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.5 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.5 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.5 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.5 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.5 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.5 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.5 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.5 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.5 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.49 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.49 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.49 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.48 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.48 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.48 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.48 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.48 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.47 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.47 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.47 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.47 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.47 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.46 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.46 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.46 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.46 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.46 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.46 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.46 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.46 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.45 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.45 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.45 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.45 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.44 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.44 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.43 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.43 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.43 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.42 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.42 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.42 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.42 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.41 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.41 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.41 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.41 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.4 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.4 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.4 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.4 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.4 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.39 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.39 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.39 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.39 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.39 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.39 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.39 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.38 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.38 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.38 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.37 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.37 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.36 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.36 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.36 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.35 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.35 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.34 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.33 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.33 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.33 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.32 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.31 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.3 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.3 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.3 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.29 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.29 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.28 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.28 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.28 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.27 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.27 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.26 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.26 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.25 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.25 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.25 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.25 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.24 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.24 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.24 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.23 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.23 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.23 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.22 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.21 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.19 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.19 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.19 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.18 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.18 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.15 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.13 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.13 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.11 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.11 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 99.09 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.09 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.05 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.05 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.03 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.03 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.03 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.03 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.03 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.01 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 99.01 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 99.0 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.0 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.97 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.94 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.87 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.87 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.86 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 98.85 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.83 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.83 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.82 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.82 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.8 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.72 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.66 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.66 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.64 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.63 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.54 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.49 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.48 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.45 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.4 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.38 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.34 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.32 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.3 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.13 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.03 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.0 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.95 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.92 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.91 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.83 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.75 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.72 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.72 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.63 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 97.58 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 97.54 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.53 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 97.53 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 97.34 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.2 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.02 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.64 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.61 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.39 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 95.96 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 95.87 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 95.83 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.66 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.59 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 95.39 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.2 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 94.9 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 94.83 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 94.31 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.18 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 93.86 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 93.27 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 93.25 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.08 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 92.86 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 92.49 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 92.33 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 91.97 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 91.9 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 91.33 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 91.13 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 91.08 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 90.95 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 90.62 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 90.6 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 90.23 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 90.13 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 90.01 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 89.94 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 89.9 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 89.81 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 89.71 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 89.57 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 89.54 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 89.2 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 89.19 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 89.18 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 88.92 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 88.78 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 88.45 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 88.17 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 88.16 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 88.14 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 88.13 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 88.11 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 88.07 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 88.02 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 87.93 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 87.39 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 87.39 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 87.32 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 87.3 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 87.22 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 87.16 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 86.89 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 86.8 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 86.66 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 86.44 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 86.35 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 86.33 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 86.3 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 86.14 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 85.73 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 85.68 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 85.59 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 85.57 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 85.51 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 85.37 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 85.15 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 85.01 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 84.97 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 84.95 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 84.69 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 84.66 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 84.1 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 83.96 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 83.7 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 83.68 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 83.68 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 83.47 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 83.28 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 83.2 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 83.18 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 83.12 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 82.79 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 82.78 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 82.67 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 82.54 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 82.49 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 82.22 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 82.2 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 82.2 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 82.15 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 82.08 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 81.47 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 81.38 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 81.21 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 80.92 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 80.82 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 80.74 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 80.71 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 80.57 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 80.4 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 80.32 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 80.12 |
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-19 Score=144.95 Aligned_cols=179 Identities=14% Similarity=0.106 Sum_probs=133.6
Q ss_pred EcCeEEEEEeccCcCCCCccccccccccchhHHHHHHHHhcCCCC-CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc
Q 046623 8 IAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHFDF-QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP 86 (218)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~-~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~ 86 (218)
+.+..+.+.+....|.. ...+..+..++.. . ++.+|||+|||+|.+++.+++.+..+|+++|+++
T Consensus 17 ~~~~~~~i~q~~~~~~~-----------~~d~~ll~~~~~~---~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~ 82 (259)
T 3lpm_A 17 LLAENLRIIQSPSVFSF-----------SIDAVLLAKFSYL---PIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQE 82 (259)
T ss_dssp ETTTTEEEEEBTTTBCC-----------CHHHHHHHHHCCC---CSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSH
T ss_pred ccCCCEEEEeCCCCccC-----------cHHHHHHHHHhcC---CCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCH
Confidence 34455666665554443 3456677777532 3 6789999999999999999887666999999999
Q ss_pred -hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC--------------------cchHHHHH
Q 046623 87 -LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP--------------------EEMVGLGK 145 (218)
Q Consensus 87 -~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~--------------------~~~~~~l~ 145 (218)
+++.+++|++.+++.+++.++.+|+.+... ..+.++||+|++++|++.. .....+++
T Consensus 83 ~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~--~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~ 160 (259)
T 3lpm_A 83 RLADMAKRSVAYNQLEDQIEIIEYDLKKITD--LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIR 160 (259)
T ss_dssp HHHHHHHHHHHHTTCTTTEEEECSCGGGGGG--TSCTTCEEEEEECCCC-----------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcccEEEEECcHHHhhh--hhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHH
Confidence 999999999999988889999988876532 1135789999999988654 23567999
Q ss_pred HHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE-EccCCCCCCCceeEEEecC
Q 046623 146 TLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL-TCQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 146 ~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~-~~~~~~~~~~~~~l~~~~~ 206 (218)
.+.++|+|||.++++ .. .....+....+ .+.+|....+ ++...++++..+.+.+..+
T Consensus 161 ~~~~~LkpgG~l~~~-~~--~~~~~~~~~~l-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k 218 (259)
T 3lpm_A 161 VAASLLKQGGKANFV-HR--PERLLDIIDIM-RKYRLEPKRIQFVHPRSDREANTVLVEGIK 218 (259)
T ss_dssp HHHHHEEEEEEEEEE-EC--TTTHHHHHHHH-HHTTEEEEEEEEEESSTTSCCSEEEEEEEE
T ss_pred HHHHHccCCcEEEEE-Ec--HHHHHHHHHHH-HHCCCceEEEEEeecCCCCCcEEEEEEEEe
Confidence 999999999944443 22 23455555555 8899999887 7888888888888877654
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=142.06 Aligned_cols=159 Identities=26% Similarity=0.331 Sum_probs=111.8
Q ss_pred cccccccccchhHHHHHHHHhcCC-CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecC-cc-hHHHHHHHH-----HHh
Q 046623 27 GRPLTGAWLWDSALILAQFISTHF-DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDV-KP-LLPGLINNV-----EAN 98 (218)
Q Consensus 27 ~~~~~g~~~w~~~~~l~~~l~~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~-~~-~~~~a~~~~-----~~~ 98 (218)
....+|..+|+.+..+.+++.... ..++.+|||+|||+|.+++.+++.+..+|+++|+ ++ +++.+++|+ +.+
T Consensus 52 ~~~~~g~~~~~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~ 131 (281)
T 3bzb_A 52 EHPLWTSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSC 131 (281)
T ss_dssp ----------CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCceeecHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhc
Confidence 456788899999999999998743 2567899999999999999998887669999999 89 999999999 444
Q ss_pred CCC----CceEEEEeecCCCCccccc--cCCCCcEEEEcccccCCcchHHHHHHHHHHhc---C--CCceEEEEEeeccC
Q 046623 99 GLG----GRVEVRELVWGSDDLSQLS--ELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCG---T--GRHTVVWAVSEVRT 167 (218)
Q Consensus 99 ~~~----~~~~~~~~d~~~~~~~~~~--~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~---~--gG~~~i~~~~~~~~ 167 (218)
++. .++.+..+||.+....... ..++||+|++.+++++......+++.+.++|+ | ||.++++ ....+.
T Consensus 132 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~-~~~~~~ 210 (281)
T 3bzb_A 132 SSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVT-FTHHRP 210 (281)
T ss_dssp -------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEE-ECC---
T ss_pred ccccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEE-EEeeec
Confidence 443 3588888888764321110 24689999999999998899999999999999 9 9944443 333222
Q ss_pred ----ChHHHHHHHHHhCC-cEEEEE
Q 046623 168 ----RTGDCLHELIMSQG-FRVIEL 187 (218)
Q Consensus 168 ----~~~~~~~~~~~~~g-f~~~~~ 187 (218)
...+++..+ .+.| |.+..+
T Consensus 211 ~~~~~~~~~~~~l-~~~G~f~v~~~ 234 (281)
T 3bzb_A 211 HLAERDLAFFRLV-NADGALIAEPW 234 (281)
T ss_dssp -----CTHHHHHH-HHSTTEEEEEE
T ss_pred ccchhHHHHHHHH-HhcCCEEEEEe
Confidence 244556655 8899 998877
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.8e-17 Score=135.82 Aligned_cols=155 Identities=21% Similarity=0.199 Sum_probs=119.3
Q ss_pred EEEEcCeEEEEEeccCcCCCCccccccccccchhHHHHHHHHhcC---CCCCCCeEEEECCCCCHHHHHHHHhCCCeEEE
Q 046623 5 EIEIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTH---FDFQNKSVLELGAGAGLPGLTAARLGATRVVL 81 (218)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~---~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~ 81 (218)
++.+.+.++++...+++|.....+ ..+..+.+.+... ...++.+|||+|||+|.+++.+++.+. +|++
T Consensus 190 ~~~~~g~~~~~~~~pgvFs~~~~d--------~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~-~V~g 260 (381)
T 3dmg_A 190 SARILGAEYTFHHLPGVFSAGKVD--------PASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVG 260 (381)
T ss_dssp EEEETTEEEEEEECTTCTTTTSCC--------HHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC-EEEE
T ss_pred eEEecCceEEEEeCCCceeCCCCC--------HHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC-EEEE
Confidence 456778889999999998865433 5566666666541 235678999999999999999998865 9999
Q ss_pred ecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccC-----CcchHHHHHHHHHHhcCCC
Q 046623 82 TDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYD-----PEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 82 ~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~-----~~~~~~~l~~~~~lL~~gG 155 (218)
+|+++ +++.+++|++.+++. ++++..|+.+... ..++||+|++++++++ ......+++.+.++|+|||
T Consensus 261 vDis~~al~~A~~n~~~~~~~--v~~~~~D~~~~~~----~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG 334 (381)
T 3dmg_A 261 VEDDLASVLSLQKGLEANALK--AQALHSDVDEALT----EEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGG 334 (381)
T ss_dssp EESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTSC----TTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCC--eEEEEcchhhccc----cCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCc
Confidence 99999 999999999998865 8899988876643 3478999999999987 4567889999999999999
Q ss_pred ceEEEEEeeccCChHHHHHHH
Q 046623 156 HTVVWAVSEVRTRTGDCLHEL 176 (218)
Q Consensus 156 ~~~i~~~~~~~~~~~~~~~~~ 176 (218)
.+++++. . .......+...
T Consensus 335 ~l~iv~n-~-~l~~~~~l~~~ 353 (381)
T 3dmg_A 335 VFFLVSN-P-FLKYEPLLEEK 353 (381)
T ss_dssp EEEEEEC-T-TSCHHHHHHHH
T ss_pred EEEEEEc-C-CCChHHHHHHh
Confidence 4444332 2 23334444444
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=132.78 Aligned_cols=162 Identities=19% Similarity=0.171 Sum_probs=117.7
Q ss_pred hhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHH---hCCCCceEEEEeec
Q 046623 37 DSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEA---NGLGGRVEVRELVW 111 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~---~~~~~~~~~~~~d~ 111 (218)
..+..|..++.. .++.+|||+|||+|.+++.++... ..+++++|+++ +++.+++|+.. +++.++++++.+|+
T Consensus 23 ~D~~lL~~~~~~---~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~ 99 (260)
T 2ozv_A 23 MDAMLLASLVAD---DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV 99 (260)
T ss_dssp CHHHHHHHTCCC---CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCT
T ss_pred cHHHHHHHHhcc---cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCH
Confidence 345556665432 456799999999999999998764 35999999999 99999999988 88777799999998
Q ss_pred CCCCccc---cccCCCCcEEEEcccccCC------------------cchHHHHHHHHHHhcCCCceEEEEEeeccCChH
Q 046623 112 GSDDLSQ---LSELGEFDMVIMSDVFYDP------------------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTG 170 (218)
Q Consensus 112 ~~~~~~~---~~~~~~~D~Iv~~~~~~~~------------------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~ 170 (218)
.+..... ..+.++||+|++++|++.. .....+++.+.++|+|||.++++ ... ....
T Consensus 100 ~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~--~~~~ 176 (260)
T 2ozv_A 100 TLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI-SRP--QSVA 176 (260)
T ss_dssp TCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE-ECG--GGHH
T ss_pred HHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE-EcH--HHHH
Confidence 7652100 0135789999999888653 23778999999999999944443 222 2344
Q ss_pred HHHHHHHHhCCcEEEEE-EccCCCCCCCceeEEEecC
Q 046623 171 DCLHELIMSQGFRVIEL-TCQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 171 ~~~~~~~~~~gf~~~~~-~~~~~~~~~~~~~l~~~~~ 206 (218)
+.+..+ .+ .|....+ ++....+++..+++.++.+
T Consensus 177 ~~~~~l-~~-~~~~~~i~~v~~~~~~~~~~~lv~~~k 211 (260)
T 2ozv_A 177 EIIAAC-GS-RFGGLEITLIHPRPGEDAVRMLVTAIK 211 (260)
T ss_dssp HHHHHH-TT-TEEEEEEEEEESSTTSCCCEEEEEEEE
T ss_pred HHHHHH-Hh-cCCceEEEEEcCCCCCCceEEEEEEEe
Confidence 555555 55 4877666 7777888888888877654
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-16 Score=126.06 Aligned_cols=149 Identities=17% Similarity=0.195 Sum_probs=105.1
Q ss_pred CCCCeEEEECCC-CCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAG-AGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+||| +|.+++.+++....+|+++|+++ +++.+++|++.++. +++++.+|+..... . +.++||+|+
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~--~-~~~~fD~I~ 128 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKG--V-VEGTFDVIF 128 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTT--T-CCSCEEEEE
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhh--c-ccCceeEEE
Confidence 467899999999 99999999877345999999999 99999999999887 58999988643321 1 347899999
Q ss_pred EcccccCCcc-------------------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEcc
Q 046623 130 MSDVFYDPEE-------------------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQ 190 (218)
Q Consensus 130 ~~~~~~~~~~-------------------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~ 190 (218)
+++|++.... ...+++.+.++|+|||.++++.... .....+.... +.+.||.+..+...
T Consensus 129 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~~-l~~~g~~~~~~~~~ 206 (230)
T 3evz_A 129 SAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK-EKLLNVIKER-GIKLGYSVKDIKFK 206 (230)
T ss_dssp ECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC-HHHHHHHHHH-HHHTTCEEEEEEEC
T ss_pred ECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc-HhHHHHHHHH-HHHcCCceEEEEec
Confidence 9988765332 4789999999999999444443321 1233344444 48999988877442
Q ss_pred CCCCCCCceeEEEecCCccc
Q 046623 191 LGGGCPEAFAVYELIPPMHE 210 (218)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~ 210 (218)
.+ .....++.+.++-..
T Consensus 207 --~g-~~~~~~l~f~~~~~~ 223 (230)
T 3evz_A 207 --VG-TRWRHSLIFFKGISE 223 (230)
T ss_dssp --CC-C-CEEEEEEECCC--
T ss_pred --CC-CeEEEEEEEeccccc
Confidence 22 244556666665333
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-16 Score=127.27 Aligned_cols=143 Identities=17% Similarity=0.090 Sum_probs=111.0
Q ss_pred HHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc
Q 046623 41 ILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ 118 (218)
Q Consensus 41 ~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (218)
.+.+.+.. ....++.+|||+|||+|.++..+++....+|+++|+++ +++.++++....++.+++.++.+|+.+...
T Consensus 48 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-- 125 (273)
T 3bus_A 48 RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF-- 125 (273)
T ss_dssp HHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS--
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC--
Confidence 34444433 33457789999999999999999875445999999999 999999999988887789999999876543
Q ss_pred cccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc---------------------CChHHHHHHHH
Q 046623 119 LSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR---------------------TRTGDCLHELI 177 (218)
Q Consensus 119 ~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~---------------------~~~~~~~~~~~ 177 (218)
+.++||+|++..++++..+...+++.+.++|+|||.+++....... ....+.+..++
T Consensus 126 --~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 203 (273)
T 3bus_A 126 --EDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDV 203 (273)
T ss_dssp --CTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHH
T ss_pred --CCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHH
Confidence 5678999999999999999999999999999999955554332211 11223445555
Q ss_pred HhCCcEEEEE
Q 046623 178 MSQGFRVIEL 187 (218)
Q Consensus 178 ~~~gf~~~~~ 187 (218)
++.||.+..+
T Consensus 204 ~~aGf~~~~~ 213 (273)
T 3bus_A 204 RQAELVVTST 213 (273)
T ss_dssp HHTTCEEEEE
T ss_pred HHcCCeEEEE
Confidence 8899998776
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-16 Score=126.42 Aligned_cols=131 Identities=13% Similarity=0.097 Sum_probs=105.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..+++.+..+|+++|+++ +++.+++++...++.+++.++.+|+.+... +.++||+|++
T Consensus 45 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~fD~v~~ 120 (257)
T 3f4k_A 45 TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF----QNEELDLIWS 120 (257)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSS----CTTCEEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCC----CCCCEEEEEe
Confidence 46779999999999999999887656999999999 999999999999988889999999866543 5678999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc-----------------CChHHHHHHHHHhCCcEEEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR-----------------TRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~-----------------~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+.++++. +...+++.+.++|+|||.+++....... ....+.+..++.+.||....+
T Consensus 121 ~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (257)
T 3f4k_A 121 EGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAH 193 (257)
T ss_dssp ESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEE
T ss_pred cChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEE
Confidence 9999887 7899999999999999955444332111 012233445559999998886
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-16 Score=127.97 Aligned_cols=131 Identities=15% Similarity=0.098 Sum_probs=106.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..+++.+..+|+++|+++ +++.++++++..++.++++++.+|+.+... +.++||+|++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD~i~~ 120 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF----RNEELDLIWS 120 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC----CTTCEEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC----CCCCEEEEEE
Confidence 56789999999999999999887666999999999 999999999999988889999999876543 5678999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccC-----------------ChHHHHHHHHHhCCcEEEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRT-----------------RTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~-----------------~~~~~~~~~~~~~gf~~~~~ 187 (218)
+.++++. +...+++.+.++|+|||.+++........ ...+.+..++.+.||....+
T Consensus 121 ~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (267)
T 3kkz_A 121 EGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVAT 193 (267)
T ss_dssp SSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEE
T ss_pred cCCceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 9999887 88999999999999999555443321110 12233444558999999877
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-16 Score=125.20 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=112.0
Q ss_pred cchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 35 LWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 35 ~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
.|++...+...+.- .++.+|||+|||+|.++..++..+. +++++|+++ +++.+++++...+.. ++.+..+|+..
T Consensus 6 ~~~~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~ 80 (239)
T 1xxl_A 6 HHHSLGLMIKTAEC---RAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAES 80 (239)
T ss_dssp CHHHHHHHHHHHTC---CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTB
T ss_pred cCCCcchHHHHhCc---CCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCC-CeEEEeccccc
Confidence 35565555555543 5678999999999999999988765 999999999 999999999888765 48999998876
Q ss_pred CCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEee---------------------ccCChHHH
Q 046623 114 DDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE---------------------VRTRTGDC 172 (218)
Q Consensus 114 ~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~---------------------~~~~~~~~ 172 (218)
... +.++||+|+++.++++..+...++..+.++|+|||.+++..... .+....+.
T Consensus 81 ~~~----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (239)
T 1xxl_A 81 LPF----PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSE 156 (239)
T ss_dssp CCS----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHH
T ss_pred CCC----CCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHH
Confidence 543 55789999999999999999999999999999999555443221 11223344
Q ss_pred HHHHHHhCCcEEEEE
Q 046623 173 LHELIMSQGFRVIEL 187 (218)
Q Consensus 173 ~~~~~~~~gf~~~~~ 187 (218)
+..++.+.||.+..+
T Consensus 157 ~~~ll~~aGf~~~~~ 171 (239)
T 1xxl_A 157 WQAMFSANQLAYQDI 171 (239)
T ss_dssp HHHHHHHTTEEEEEE
T ss_pred HHHHHHHCCCcEEEE
Confidence 555568899997766
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-17 Score=126.89 Aligned_cols=101 Identities=14% Similarity=0.216 Sum_probs=89.3
Q ss_pred CeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEccc
Q 046623 55 KSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDV 133 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~ 133 (218)
.+|||+|||+|..+..+++.+..+++++|+++ +++.+++++...+...++++..+|+.+... +.++||+|+++.+
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~v~~~~~ 120 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI----EDNYADLIVSRGS 120 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS----CTTCEEEEEEESC
T ss_pred CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC----CcccccEEEECch
Confidence 39999999999999999877445999999999 999999999998887789999999876543 5678999999999
Q ss_pred ccCCcchHHHHHHHHHHhcCCCceEE
Q 046623 134 FYDPEEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 134 ~~~~~~~~~~l~~~~~lL~~gG~~~i 159 (218)
+++..+...+++.+.++|+|||.+++
T Consensus 121 l~~~~~~~~~l~~~~~~L~pgG~l~~ 146 (219)
T 3dlc_A 121 VFFWEDVATAFREIYRILKSGGKTYI 146 (219)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred HhhccCHHHHHHHHHHhCCCCCEEEE
Confidence 99999999999999999999994333
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.3e-16 Score=128.18 Aligned_cols=131 Identities=11% Similarity=0.021 Sum_probs=106.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
..++.+|||+|||+|.++..+++. +. +|+++|+++ +++.++++++.+++..+++++.+|+.+... +.++||+|
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD~V 189 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPF----DKGAVTAS 189 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC----CTTCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCC----CCCCEeEE
Confidence 356789999999999999999876 54 999999999 999999999999988789999999876543 56799999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccC-------------------ChHHHHHHHHHhCCcEEEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRT-------------------RTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~-------------------~~~~~~~~~~~~~gf~~~~~ 187 (218)
+++.++++. +...+++.+.++|+|||.+++........ ...+.+..++++.||.+..+
T Consensus 190 ~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~ 266 (312)
T 3vc1_A 190 WNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTI 266 (312)
T ss_dssp EEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEE
T ss_pred EECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEE
Confidence 999999887 59999999999999999555544322211 12344555669999998877
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-16 Score=125.95 Aligned_cols=134 Identities=16% Similarity=0.060 Sum_probs=105.1
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
....++.+|||+|||+|..+..+++....+++++|+++ +++.++++++..++..++.+..+|+.+.. ..++||+
T Consensus 32 ~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~fD~ 106 (256)
T 1nkv_A 32 LRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-----ANEKCDV 106 (256)
T ss_dssp TCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-----CSSCEEE
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCC-----cCCCCCE
Confidence 33457789999999999999999866344999999999 99999999998888777999999887653 2578999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc------------------CChHHHHHHHHHhCCcEEEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR------------------TRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~------------------~~~~~~~~~~~~~~gf~~~~~ 187 (218)
|++..++++..+..++++.+.++|||||.+++....... ....+.+..++.+.||....+
T Consensus 107 V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 184 (256)
T 1nkv_A 107 AACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEM 184 (256)
T ss_dssp EEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEE
T ss_pred EEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEE
Confidence 999999998889999999999999999955444322111 112234455558999987665
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=121.43 Aligned_cols=145 Identities=12% Similarity=0.001 Sum_probs=98.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..++.+|||+|||+|..+..+++. ..+|+++|+++ +++.++++++.+++ .+++++..+...... ...++||+|+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~---~~~~~fD~v~ 94 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDH---YVREPIRAAI 94 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGG---TCCSCEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHh---hccCCcCEEE
Confidence 356789999999999999999887 45999999999 99999999999887 568888755543211 1356899999
Q ss_pred EcccccCC---------cchHHHHHHHHHHhcCCCceEEEEEeeccC------ChHHHHHHHHHhCCcEEEEEEccCCCC
Q 046623 130 MSDVFYDP---------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRT------RTGDCLHELIMSQGFRVIELTCQLGGG 194 (218)
Q Consensus 130 ~~~~~~~~---------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~------~~~~~~~~~~~~~gf~~~~~~~~~~~~ 194 (218)
++..+... .....+++.+.++|+|||.+++........ ...+.+..+ ...+|.+.......+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~ 173 (185)
T 3mti_A 95 FNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGL-DQRVFTAMLYQPLNQIN 173 (185)
T ss_dssp EEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHS-CTTTEEEEEEEESSCSS
T ss_pred EeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCceEEEEEehhhccCC
Confidence 87443222 345678899999999999555554322111 122223333 45678888886655545
Q ss_pred CCCceeE
Q 046623 195 CPEAFAV 201 (218)
Q Consensus 195 ~~~~~~l 201 (218)
.+....+
T Consensus 174 ~~~~~~~ 180 (185)
T 3mti_A 174 TPPFLVM 180 (185)
T ss_dssp CCCEEEE
T ss_pred CCCeEEE
Confidence 5544443
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-16 Score=125.20 Aligned_cols=130 Identities=20% Similarity=0.152 Sum_probs=103.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..+++.+. +++++|+++ +++.+++++...+.. ++.+..+|+..... +.++||+|++
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l~~----~~~~fD~V~~ 109 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPF----TDERFHIVTC 109 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCS----CTTCEEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhCCC----CCCCEEEEEE
Confidence 4678999999999999999988765 999999999 999999999887765 58999999876543 5678999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeec---------------------cCChHHHHHHHHHhCCcEEEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV---------------------RTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~---------------------~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+.++++..+...++.++.++|+|||.+++...... +....+.+..++.+.||.+..+
T Consensus 110 ~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 187 (260)
T 1vl5_A 110 RIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEEL 187 (260)
T ss_dssp ESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEE
T ss_pred hhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEE
Confidence 99999999999999999999999995554322210 1122334555558899998766
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-16 Score=127.53 Aligned_cols=131 Identities=17% Similarity=0.196 Sum_probs=105.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
++.+|||+|||+|.++..+++.+. +++++|+++ +++.+++++...++..++.++.+|+.+... ...++||+|+++
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~fD~v~~~ 143 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS---HLETPVDLILFH 143 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG---GCSSCEEEEEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh---hcCCCceEEEEC
Confidence 467999999999999999988865 999999999 999999999988876679999998876541 146789999999
Q ss_pred ccccCCcchHHHHHHHHHHhcCCCceEEEEEeec------------------------------cCChHHHHHHHHHhCC
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV------------------------------RTRTGDCLHELIMSQG 181 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~------------------------------~~~~~~~~~~~~~~~g 181 (218)
.++++..+...+++.+.++|+|||.+++...... +....+.+..++++.|
T Consensus 144 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 223 (285)
T 4htf_A 144 AVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAG 223 (285)
T ss_dssp SCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTT
T ss_pred chhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCC
Confidence 9999999999999999999999995444432110 1123345566669999
Q ss_pred cEEEEE
Q 046623 182 FRVIEL 187 (218)
Q Consensus 182 f~~~~~ 187 (218)
|.+..+
T Consensus 224 f~v~~~ 229 (285)
T 4htf_A 224 WQIMGK 229 (285)
T ss_dssp CEEEEE
T ss_pred Cceeee
Confidence 999876
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.3e-16 Score=121.39 Aligned_cols=131 Identities=21% Similarity=0.179 Sum_probs=105.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC--CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG--ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~--~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..+++.+ ..+++++|+++ +++.+++++...+.. ++.+..+|+.+... +.++||+|
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~----~~~~fD~v 110 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPL----PDNTVDFI 110 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSS----CSSCEEEE
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCC----CCCCeeEE
Confidence 467799999999999999998664 35999999999 999999999888875 59999999876543 56789999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeec---------cCChHHHHHHHHHhCCcEEEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV---------RTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~---------~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+++.++++..+...+++.+.++|+|||.+++...... .....+.+..++.+.||.+..+
T Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 178 (219)
T 3dh0_A 111 FMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRV 178 (219)
T ss_dssp EEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEE
T ss_pred EeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEE
Confidence 9999999999999999999999999994444332211 1123455556669999998876
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.70 E-value=8.2e-16 Score=119.92 Aligned_cols=150 Identities=17% Similarity=0.181 Sum_probs=110.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCCC----ceEEEEeecCCCCccccccCCCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLGG----RVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
.++.+|||+|||+|.++..+++.+. .+++++|+++ +++.+++++..+++.. +++++.+|+..... ..++|
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~f 103 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK----RFSGY 103 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG----GGTTC
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc----ccCCC
Confidence 4677999999999999999987654 6999999999 9999999987776543 69999998854433 45789
Q ss_pred cEEEEcccccCCcch--HHHHHHHHHHhcCCCceEEEEEeecc-------------------CChHHHHH----HHHHhC
Q 046623 126 DMVIMSDVFYDPEEM--VGLGKTLKRVCGTGRHTVVWAVSEVR-------------------TRTGDCLH----ELIMSQ 180 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~--~~~l~~~~~lL~~gG~~~i~~~~~~~-------------------~~~~~~~~----~~~~~~ 180 (218)
|+|+++.++++..+. ..+++.+.++|+||| +++....... ....+.+. .++.+.
T Consensus 104 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 182 (219)
T 3jwg_A 104 DAATVIEVIEHLDENRLQAFEKVLFEFTRPQT-VIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKY 182 (219)
T ss_dssp SEEEEESCGGGCCHHHHHHHHHHHHTTTCCSE-EEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHH
T ss_pred CEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCE-EEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHC
Confidence 999999999988744 799999999999998 3333222211 01223333 556889
Q ss_pred CcEEEEEEc---cCCCCCCCceeEEEecC
Q 046623 181 GFRVIELTC---QLGGGCPEAFAVYELIP 206 (218)
Q Consensus 181 gf~~~~~~~---~~~~~~~~~~~l~~~~~ 206 (218)
||.+....+ .+..+.+....+++...
T Consensus 183 Gf~v~~~~~g~~~~~~g~~~qi~~~~~~~ 211 (219)
T 3jwg_A 183 GYSVRFLQIGEIDDEFGSPTQMGVFTLGA 211 (219)
T ss_dssp TEEEEEEEESCCCTTSCCSEEEEEEEECC
T ss_pred CcEEEEEecCCccccCCCCeEEEEEeccC
Confidence 999877733 33346666666666544
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-16 Score=125.06 Aligned_cols=141 Identities=13% Similarity=0.102 Sum_probs=107.5
Q ss_pred HHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc
Q 046623 40 LILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ 118 (218)
Q Consensus 40 ~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (218)
..+..++... ..++.+|||+|||+|..+..+++.+. +|+++|+++ +++.++++....+...++.++.+|+.+..
T Consensus 54 ~~l~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--- 128 (235)
T 3lcc_A 54 PLIVHLVDTS-SLPLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR--- 128 (235)
T ss_dssp HHHHHHHHTT-CSCCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC---
T ss_pred HHHHHHHHhc-CCCCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC---
Confidence 3455555442 23456999999999999999977655 899999999 99999999876544456999999987654
Q ss_pred cccCCCCcEEEEcccccCCc--chHHHHHHHHHHhcCCCceEEEEEeecc-------CChHHHHHHHHHhCCcEEEEE
Q 046623 119 LSELGEFDMVIMSDVFYDPE--EMVGLGKTLKRVCGTGRHTVVWAVSEVR-------TRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 119 ~~~~~~~D~Iv~~~~~~~~~--~~~~~l~~~~~lL~~gG~~~i~~~~~~~-------~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+.++||+|+++.++++.. +...+++.+.++|+|||.+++....... ....+.+..++.+.||.+..+
T Consensus 129 --~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 204 (235)
T 3lcc_A 129 --PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSV 204 (235)
T ss_dssp --CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEE
T ss_pred --CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEE
Confidence 446899999999998766 8899999999999999954444332211 123455666669999999887
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-16 Score=122.43 Aligned_cols=130 Identities=19% Similarity=0.220 Sum_probs=103.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC----CceEEEEeecCCCCccccccCCCCcE
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG----GRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
++.+|||+|||+|..+..+++.+. +++++|+++ +++.++++....+.. .++.+...|+..... +.++||+
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~ 104 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF----HDSSFDF 104 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS----CTTCEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC----CCCceeE
Confidence 677999999999999999988865 999999999 999999998776652 347888888776543 5678999
Q ss_pred EEEcccccCCcchH---HHHHHHHHHhcCCCceEEEEEee-------------------------------------ccC
Q 046623 128 VIMSDVFYDPEEMV---GLGKTLKRVCGTGRHTVVWAVSE-------------------------------------VRT 167 (218)
Q Consensus 128 Iv~~~~~~~~~~~~---~~l~~~~~lL~~gG~~~i~~~~~-------------------------------------~~~ 167 (218)
|+++.++++..+.. .+++.+.++|+|||.+++..... .+.
T Consensus 105 v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (235)
T 3sm3_A 105 AVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHH 184 (235)
T ss_dssp EEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEEC
T ss_pred EEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEe
Confidence 99999999887777 89999999999999555443211 122
Q ss_pred ChHHHHHHHHHhCCcEEEEE
Q 046623 168 RTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 168 ~~~~~~~~~~~~~gf~~~~~ 187 (218)
...+.+..++++.||.+..+
T Consensus 185 ~~~~~l~~ll~~aGf~~~~~ 204 (235)
T 3sm3_A 185 FTEKELVFLLTDCRFEIDYF 204 (235)
T ss_dssp BCHHHHHHHHHTTTEEEEEE
T ss_pred CCHHHHHHHHHHcCCEEEEE
Confidence 34556666669999999887
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-15 Score=115.36 Aligned_cols=127 Identities=15% Similarity=0.082 Sum_probs=97.9
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 50 FDFQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 50 ~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
...++.+|||+|||+|..+..+++.+ ..+++++|+++ +++.++++++.++. .+++++.+|+.+... ..++||+
T Consensus 37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~----~~~~~D~ 111 (204)
T 3e05_A 37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLD----DLPDPDR 111 (204)
T ss_dssp TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCT----TSCCCSE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhh----cCCCCCE
Confidence 33567899999999999999998775 36999999999 99999999999887 569999988765432 3367999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
|+++.+++ ....+++.+.++|+|||.+++ .........+....+ .+.||.+...
T Consensus 112 i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~--~~~~~~~~~~~~~~l-~~~g~~~~~~ 165 (204)
T 3e05_A 112 VFIGGSGG---MLEEIIDAVDRRLKSEGVIVL--NAVTLDTLTKAVEFL-EDHGYMVEVA 165 (204)
T ss_dssp EEESCCTT---CHHHHHHHHHHHCCTTCEEEE--EECBHHHHHHHHHHH-HHTTCEEEEE
T ss_pred EEECCCCc---CHHHHHHHHHHhcCCCeEEEE--EecccccHHHHHHHH-HHCCCceeEE
Confidence 99987664 778999999999999994333 333233444445554 8999854443
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4e-16 Score=124.77 Aligned_cols=144 Identities=13% Similarity=0.081 Sum_probs=108.1
Q ss_pred hhHHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 37 DSALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 37 ~~~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
+....+.+.+.. ....++.+|||+|||+|.++..+++....+|+++|+++ +++.++++.... .+++++.+|+.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~ 114 (266)
T 3ujc_A 38 SGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTK 114 (266)
T ss_dssp TTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTC
T ss_pred cchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccC
Confidence 344444444444 33456789999999999999999865234999999999 999998886554 4589999998776
Q ss_pred CccccccCCCCcEEEEcccccCC--cchHHHHHHHHHHhcCCCceEEEEEeecc------------------CChHHHHH
Q 046623 115 DLSQLSELGEFDMVIMSDVFYDP--EEMVGLGKTLKRVCGTGRHTVVWAVSEVR------------------TRTGDCLH 174 (218)
Q Consensus 115 ~~~~~~~~~~~D~Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~~~~~~------------------~~~~~~~~ 174 (218)
.. +.++||+|+++.++++. .+...+++.+.++|+|||.+++....... ....+.+.
T Consensus 115 ~~----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (266)
T 3ujc_A 115 EF----PENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYA 190 (266)
T ss_dssp CC----CTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CC----CCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHH
Confidence 43 56899999999999998 89999999999999999955444322211 11334555
Q ss_pred HHHHhCCcEEEEE
Q 046623 175 ELIMSQGFRVIEL 187 (218)
Q Consensus 175 ~~~~~~gf~~~~~ 187 (218)
.++.+.||....+
T Consensus 191 ~~l~~~Gf~~~~~ 203 (266)
T 3ujc_A 191 DILTACNFKNVVS 203 (266)
T ss_dssp HHHHHTTCEEEEE
T ss_pred HHHHHcCCeEEEE
Confidence 6669999998776
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.69 E-value=9.3e-16 Score=125.04 Aligned_cols=132 Identities=15% Similarity=0.117 Sum_probs=106.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
..++.+|||+|||+|..+..+++. +. +++++|+++ +++.++++....+...++.++.+|+.+... +.++||+|
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~fD~v 154 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC----EDNSYDFI 154 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS----CTTCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC----CCCCEeEE
Confidence 356789999999999999999765 65 999999999 999999999988887789999999877543 56789999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc------------------CChHHHHHHHHHhCCcEEEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR------------------TRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~------------------~~~~~~~~~~~~~~gf~~~~~ 187 (218)
++..++++..+...+++.+.++|+|||.+++....... ....+.+..++.+.||.+..+
T Consensus 155 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 231 (297)
T 2o57_A 155 WSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRT 231 (297)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEE
T ss_pred EecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEE
Confidence 99999999889999999999999999955544332211 012233445558999998876
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.6e-16 Score=123.97 Aligned_cols=104 Identities=20% Similarity=0.198 Sum_probs=88.4
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
....++.+|||+|||+|..+..+++.+..+++++|+++ +++.++++.. ..++.++.+|+.+... +.++||+
T Consensus 40 ~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~----~~~~fD~ 111 (253)
T 3g5l_A 40 LPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAI----EPDAYNV 111 (253)
T ss_dssp CCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCC----CTTCEEE
T ss_pred hhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCC----CCCCeEE
Confidence 33457889999999999999999888776999999999 9999988765 2458999988865543 5688999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|+++.++++..+...+++.+.++|+|||.+++.
T Consensus 112 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 112 VLSSLALHYIASFDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence 999999999999999999999999999954443
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.69 E-value=9.4e-17 Score=124.36 Aligned_cols=144 Identities=10% Similarity=-0.002 Sum_probs=103.0
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhC-----------CCCceE
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANG-----------LGGRVE 105 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~-----------~~~~~~ 105 (218)
....+.+++......++.+|||+|||+|..+..+++.|. +|+++|+|+ +++.++++..... ...+++
T Consensus 7 ~~~~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~ 85 (203)
T 1pjz_A 7 VNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE 85 (203)
T ss_dssp STHHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred CCHHHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccE
Confidence 334566666553334678999999999999999998876 999999999 9999987754210 014589
Q ss_pred EEEeecCCCCccccccC-CCCcEEEEcccccCCc--chHHHHHHHHHHhcCCCceEEEEEeecc--------CChHHHHH
Q 046623 106 VRELVWGSDDLSQLSEL-GEFDMVIMSDVFYDPE--EMVGLGKTLKRVCGTGRHTVVWAVSEVR--------TRTGDCLH 174 (218)
Q Consensus 106 ~~~~d~~~~~~~~~~~~-~~~D~Iv~~~~~~~~~--~~~~~l~~~~~lL~~gG~~~i~~~~~~~--------~~~~~~~~ 174 (218)
++.+|+.+... .. ++||+|++..++++.. +...+++.+.++|||||.+++++..... ....+.+.
T Consensus 86 ~~~~d~~~l~~----~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~ 161 (203)
T 1pjz_A 86 IWCGDFFALTA----RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLH 161 (203)
T ss_dssp EEEECCSSSTH----HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHH
T ss_pred EEECccccCCc----ccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHH
Confidence 99999877653 32 6899999988877653 4567899999999999953444332211 12345555
Q ss_pred HHHHhCCcEEEEE
Q 046623 175 ELIMSQGFRVIEL 187 (218)
Q Consensus 175 ~~~~~~gf~~~~~ 187 (218)
.++.. ||.+..+
T Consensus 162 ~~~~~-gf~i~~~ 173 (203)
T 1pjz_A 162 RVMSG-NWEVTKV 173 (203)
T ss_dssp HTSCS-SEEEEEE
T ss_pred HHhcC-CcEEEEe
Confidence 55465 9998777
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-16 Score=119.73 Aligned_cols=101 Identities=22% Similarity=0.265 Sum_probs=86.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.+++.+++.+..+|+++|+++ +++.+++|++.+++ .+++++.+|+.+.... .+.++||+|++
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~--~~~~~fD~i~~ 119 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAA--GTTSPVDLVLA 119 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHH--CCSSCCSEEEE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhh--ccCCCccEEEE
Confidence 57889999999999999988777777899999999 99999999999987 4699999887654210 13578999999
Q ss_pred cccccCC-cchHHHHHHHHH--HhcCCC
Q 046623 131 SDVFYDP-EEMVGLGKTLKR--VCGTGR 155 (218)
Q Consensus 131 ~~~~~~~-~~~~~~l~~~~~--lL~~gG 155 (218)
+++++.. ++..+++..+.+ +|+|||
T Consensus 120 ~~p~~~~~~~~~~~l~~~~~~~~L~pgG 147 (189)
T 3p9n_A 120 DPPYNVDSADVDAILAALGTNGWTREGT 147 (189)
T ss_dssp CCCTTSCHHHHHHHHHHHHHSSSCCTTC
T ss_pred CCCCCcchhhHHHHHHHHHhcCccCCCe
Confidence 9887764 678899999999 999999
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=9e-16 Score=129.44 Aligned_cols=155 Identities=20% Similarity=0.154 Sum_probs=112.2
Q ss_pred eEEEEcCeEEEEEeccCcCCCCccccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhC-CCeEEEe
Q 046623 4 REIEIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLG-ATRVVLT 82 (218)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~ 82 (218)
..+.+.+..+++...+++|.....+ ..+..+.+++ +..++.+|||+|||+|.+++.+++.+ ..+|+++
T Consensus 184 ~~~~~~~~~~~~~~~pg~Fs~~~~d--------~~~~~ll~~l---~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gv 252 (375)
T 4dcm_A 184 VSWKLEGTDWTIHNHANVFSRTGLD--------IGARFFMQHL---PENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFV 252 (375)
T ss_dssp EEEEETTTTEEEEECTTCTTCSSCC--------HHHHHHHHTC---CCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEE
T ss_pred eEEEecCCceEEEeCCCcccCCccc--------HHHHHHHHhC---cccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEE
Confidence 4667788888999999988864333 3333443333 23455899999999999999998775 4699999
Q ss_pred cCcc-hHHHHHHHHHHhCCCC--ceEEEEeecCCCCccccccCCCCcEEEEcccccCC-----cchHHHHHHHHHHhcCC
Q 046623 83 DVKP-LLPGLINNVEANGLGG--RVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP-----EEMVGLGKTLKRVCGTG 154 (218)
Q Consensus 83 D~~~-~~~~a~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~-----~~~~~~l~~~~~lL~~g 154 (218)
|+++ +++.+++|++.+++.+ ++++...|+.+.. +.++||+|++++|++.. ....++++.+.++|+||
T Consensus 253 D~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~-----~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkpg 327 (375)
T 4dcm_A 253 DESPMAVASSRLNVETNMPEALDRCEFMINNALSGV-----EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKIN 327 (375)
T ss_dssp ESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC-----CTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEE
T ss_pred ECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC-----CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCC
Confidence 9999 9999999999988653 4777888877632 45789999999998752 23457899999999999
Q ss_pred CceEEEEEeeccCChHHHHHHH
Q 046623 155 RHTVVWAVSEVRTRTGDCLHEL 176 (218)
Q Consensus 155 G~~~i~~~~~~~~~~~~~~~~~ 176 (218)
|.++++.. . .......+...
T Consensus 328 G~l~iv~n-~-~~~~~~~l~~~ 347 (375)
T 4dcm_A 328 GELYIVAN-R-HLDYFHKLKKI 347 (375)
T ss_dssp EEEEEEEE-T-TSCHHHHHHHH
T ss_pred cEEEEEEE-C-CcCHHHHHHHh
Confidence 95555433 2 23334445544
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-15 Score=116.74 Aligned_cols=125 Identities=13% Similarity=0.113 Sum_probs=97.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..++.+|||+|||+|.+++.+++. ..+|+++|+++ +++.++++++.+++..+++++.+|..+... ..+.||+|+
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~----~~~~~D~v~ 127 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA----DLPLPEAVF 127 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT----TSCCCSEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc----cCCCCCEEE
Confidence 356789999999999999999887 45999999999 999999999999887679999988765322 335799999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELT 188 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~ 188 (218)
++... +.. +++.+.++|+|||.++ +.........+....+ ++.|+.+..+.
T Consensus 128 ~~~~~----~~~-~l~~~~~~LkpgG~lv--~~~~~~~~~~~~~~~l-~~~g~~i~~i~ 178 (204)
T 3njr_A 128 IGGGG----SQA-LYDRLWEWLAPGTRIV--ANAVTLESETLLTQLH-ARHGGQLLRID 178 (204)
T ss_dssp ECSCC----CHH-HHHHHHHHSCTTCEEE--EEECSHHHHHHHHHHH-HHHCSEEEEEE
T ss_pred ECCcc----cHH-HHHHHHHhcCCCcEEE--EEecCcccHHHHHHHH-HhCCCcEEEEE
Confidence 87643 455 9999999999999433 3333334455555555 88889888873
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=126.14 Aligned_cols=148 Identities=20% Similarity=0.122 Sum_probs=106.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|.+++.++.. +..+|+++|+++ +++.+++|++.+++.+ ++++.+|+.+.... ....++||+|+
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~-~~~~~~fD~I~ 156 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLARE-AGHREAYARAV 156 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTS-TTTTTCEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhcc-cccCCCceEEE
Confidence 46789999999999999999865 456999999999 9999999999998865 99999887654320 00247899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCCCCCCceeEEEecC
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~l~~~~~ 206 (218)
++.+ .+...+++.+.++|+|||.++++..........+....+ ...||.+..+.....++....+.+..+.+
T Consensus 157 s~a~----~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l-~~~G~~~~~~~~~~~p~~~~~R~l~~~~k 228 (249)
T 3g89_A 157 ARAV----APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPAL-ERLGGRLGEVLALQLPLSGEARHLVVLEK 228 (249)
T ss_dssp EESS----CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHH-HHHTEEEEEEEEEECTTTCCEEEEEEEEE
T ss_pred ECCc----CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHH-HHcCCeEEEEEEeeCCCCCCcEEEEEEEe
Confidence 9654 567899999999999999555444322222233333444 78899998873334445444555554443
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-16 Score=121.36 Aligned_cols=150 Identities=16% Similarity=0.087 Sum_probs=106.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..+++. +..+++++|+++ +++.++++++.+++..+++++.+|+.+... ...++||+|
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~fD~v 97 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK---YIDCPVKAV 97 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG---TCCSCEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh---hccCCceEE
Confidence 46789999999999999998765 345999999999 999999999998876679999988755431 134789999
Q ss_pred EEcccccCC---------cchHHHHHHHHHHhcCCCceEEEEEeeccCC--hHHHHHHHH---HhCCcEEEEEEccCCCC
Q 046623 129 IMSDVFYDP---------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTR--TGDCLHELI---MSQGFRVIELTCQLGGG 194 (218)
Q Consensus 129 v~~~~~~~~---------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~--~~~~~~~~~---~~~gf~~~~~~~~~~~~ 194 (218)
+++.++... .+...+++.+.++|+|||.+++......... ..+.+...+ ...+|.+.......+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~ 177 (197)
T 3eey_A 98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQAN 177 (197)
T ss_dssp EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCS
T ss_pred EEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCcc
Confidence 998766221 2346799999999999995544433221111 112222222 45678888887777766
Q ss_pred CCCceeEEEe
Q 046623 195 CPEAFAVYEL 204 (218)
Q Consensus 195 ~~~~~~l~~~ 204 (218)
.+....+.+-
T Consensus 178 ~pp~~~~~~~ 187 (197)
T 3eey_A 178 CPPILVCIEK 187 (197)
T ss_dssp CCCEEEEEEE
T ss_pred CCCeEEEEEE
Confidence 6666665543
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-15 Score=122.76 Aligned_cols=109 Identities=13% Similarity=0.061 Sum_probs=90.9
Q ss_pred HhcCCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCC
Q 046623 46 ISTHFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELG 123 (218)
Q Consensus 46 l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 123 (218)
+......++.+|||+|||+|.++..+++. + .+|+++|+++ +++.++++....++..++++..+|+.+. .+
T Consensus 65 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~ 136 (302)
T 3hem_A 65 LDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-------DE 136 (302)
T ss_dssp HHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-------CC
T ss_pred HHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-------CC
Confidence 33333457789999999999999999876 7 5999999999 9999999999988877899999887543 47
Q ss_pred CCcEEEEcccccCCcc---------hHHHHHHHHHHhcCCCceEEEEE
Q 046623 124 EFDMVIMSDVFYDPEE---------MVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~~~---------~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
+||+|+++.++++..+ ...+++.+.++|+|||.+++...
T Consensus 137 ~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 137 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp CCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred CccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 8999999999988744 47999999999999995555443
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-15 Score=118.26 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=85.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCCC----ceEEEEeecCCCCccccccCCCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLGG----RVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
.++.+|||+|||+|.++..+++.+. .+++++|+++ +++.+++++..+++.. +++++.+|+..... ..++|
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~f 103 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK----RFHGY 103 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG----GGCSC
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc----cCCCc
Confidence 4677999999999999999987653 5999999999 9999999988776653 69999998754433 45789
Q ss_pred cEEEEcccccCCcch--HHHHHHHHHHhcCCC
Q 046623 126 DMVIMSDVFYDPEEM--VGLGKTLKRVCGTGR 155 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~--~~~l~~~~~lL~~gG 155 (218)
|+|+++.++++..+. ..+++.+.++|+|||
T Consensus 104 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG 135 (217)
T 3jwh_A 104 DAATVIEVIEHLDLSRLGAFERVLFEFAQPKI 135 (217)
T ss_dssp SEEEEESCGGGCCHHHHHHHHHHHHTTTCCSE
T ss_pred CEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCE
Confidence 999999999987644 899999999999999
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.68 E-value=6.7e-16 Score=122.83 Aligned_cols=136 Identities=14% Similarity=0.082 Sum_probs=102.8
Q ss_pred HHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCC
Q 046623 45 FISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELG 123 (218)
Q Consensus 45 ~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 123 (218)
++......++.+|||+|||+|.++..+++.+..+++++|+++ +++.++++.... .++.++.+|+..... +.+
T Consensus 85 ~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~----~~~ 157 (254)
T 1xtp_A 85 FIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATL----PPN 157 (254)
T ss_dssp HHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCC----CSS
T ss_pred HHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCC----CCC
Confidence 333333456789999999999999998876666899999999 999999887554 458888888766543 557
Q ss_pred CCcEEEEcccccCC--cchHHHHHHHHHHhcCCCceEEEEEeec------------cCChHHHHHHHHHhCCcEEEEE
Q 046623 124 EFDMVIMSDVFYDP--EEMVGLGKTLKRVCGTGRHTVVWAVSEV------------RTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~~~~~------------~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+||+|++..++++. .+...+++.+.++|+|||.+++...... .....+.+..++.+.||.+..+
T Consensus 158 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 235 (254)
T 1xtp_A 158 TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred CeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEe
Confidence 89999999999887 5689999999999999994444332110 0113355566669999999887
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-15 Score=114.72 Aligned_cols=137 Identities=15% Similarity=0.163 Sum_probs=102.7
Q ss_pred EEcCeEEEEEeccCcCCCCccccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc
Q 046623 7 EIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP 86 (218)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~ 86 (218)
.+.+..+......++|.+...+ .....+.+.+ ...++.+|||+|||+|.++..+++. ..+++++|+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~---~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~ 84 (194)
T 1dus_A 17 ILRGKKLKFKTDSGVFSYGKVD--------KGTKILVENV---VVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINR 84 (194)
T ss_dssp EETTEEEEEEEETTSTTTTSCC--------HHHHHHHHHC---CCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCH
T ss_pred ecCCCceEEEeCCCcCCccccc--------hHHHHHHHHc---ccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCH
Confidence 4556667776666677654211 2223333333 2246789999999999999999877 45999999999
Q ss_pred -hHHHHHHHHHHhCCCC-ceEEEEeecCCCCccccccCCCCcEEEEcccccC-CcchHHHHHHHHHHhcCCCceEEE
Q 046623 87 -LLPGLINNVEANGLGG-RVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYD-PEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 87 -~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~-~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+++.+++++..++..+ ++++..+|+.+.. +.++||+|+++.++++ ......+++.+.++|+|||.+++.
T Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 156 (194)
T 1dus_A 85 RAIKLAKENIKLNNLDNYDIRVVHSDLYENV-----KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp HHHHHHHHHHHHTTCTTSCEEEEECSTTTTC-----TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCccceEEEECchhccc-----ccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999999999887754 4899998876632 3568999999888776 356789999999999999944433
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-15 Score=121.36 Aligned_cols=105 Identities=13% Similarity=0.058 Sum_probs=88.7
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCc
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
....++.+|||+|||+|.++..++ ..+. +|+++|+++ +++.+++++...+...++.+..+|+.+. + ++||
T Consensus 60 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------~-~~fD 131 (287)
T 1kpg_A 60 LGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF------D-EPVD 131 (287)
T ss_dssp TTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC------C-CCCS
T ss_pred cCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC------C-CCee
Confidence 334567899999999999999987 5665 999999999 9999999998888777799998887432 3 7899
Q ss_pred EEEEcccccCC--cchHHHHHHHHHHhcCCCceEEEE
Q 046623 127 MVIMSDVFYDP--EEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 127 ~Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+|++..++++. .+...+++.+.++|+|||.+++..
T Consensus 132 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 132 RIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp EEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99999999887 678999999999999999555543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.5e-16 Score=118.39 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=104.1
Q ss_pred HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc
Q 046623 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL 119 (218)
Q Consensus 41 ~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (218)
.+..++.. .+.+|||+|||+|.++..++..+. +++++|+++ +++.++++. .++.++.+|+.+...
T Consensus 33 ~l~~~~~~----~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~--- 98 (203)
T 3h2b_A 33 LIEPWATG----VDGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH------PSVTFHHGTITDLSD--- 98 (203)
T ss_dssp HHHHHHHH----CCSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGG---
T ss_pred HHHHHhcc----CCCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC------CCCeEEeCccccccc---
Confidence 45555543 277999999999999999988866 899999999 999988772 358899888766443
Q ss_pred ccCCCCcEEEEcccccCCc--chHHHHHHHHHHhcCCCceEEEEEeecc------------CChHHHHHHHHHhCCcEEE
Q 046623 120 SELGEFDMVIMSDVFYDPE--EMVGLGKTLKRVCGTGRHTVVWAVSEVR------------TRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~~~~~--~~~~~l~~~~~lL~~gG~~~i~~~~~~~------------~~~~~~~~~~~~~~gf~~~ 185 (218)
+.++||+|+++.++++.. +...+++.+.++|+|||.+++....... ....+.+..++.+.||.+.
T Consensus 99 -~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 177 (203)
T 3h2b_A 99 -SPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVT 177 (203)
T ss_dssp -SCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEE
T ss_pred -CCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEE
Confidence 568899999999998864 8999999999999999944444322211 1234556666699999999
Q ss_pred EEEccCC
Q 046623 186 ELTCQLG 192 (218)
Q Consensus 186 ~~~~~~~ 192 (218)
.+.....
T Consensus 178 ~~~~~~~ 184 (203)
T 3h2b_A 178 SSHWDPR 184 (203)
T ss_dssp EEEECTT
T ss_pred EEEecCC
Confidence 9844433
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.67 E-value=9.2e-16 Score=121.48 Aligned_cols=130 Identities=15% Similarity=0.073 Sum_probs=99.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
++.+|||+|||+|..+..+++.+..+++++|+++ +++.+++++...+ ..++.++.+|+..... ..++||+|+++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~----~~~~fD~v~~~ 153 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTP----EPDSYDVIWIQ 153 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCC----CSSCEEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCC----CCCCEEEEEEc
Confidence 5789999999999999998776666999999999 9999999887653 2357888888765543 45689999999
Q ss_pred ccccCCcc--hHHHHHHHHHHhcCCCceEEEEEeec-----------cCChHHHHHHHHHhCCcEEEEE
Q 046623 132 DVFYDPEE--MVGLGKTLKRVCGTGRHTVVWAVSEV-----------RTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 132 ~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~~~~~~-----------~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
.++++..+ ...+++.+.++|+|||.+++...... .....+.+..++.+.||.+..+
T Consensus 154 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 154 WVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 99988766 45899999999999994444322110 0113445555569999999887
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-16 Score=123.08 Aligned_cols=125 Identities=14% Similarity=0.108 Sum_probs=99.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..+++.+. +++++|+++ +++.++++... +++++.+|+.+. . +.++||+|++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~-~----~~~~fD~v~~ 109 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD-----GITYIHSRFEDA-Q----LPRRYDNIVL 109 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGC-C----CSSCEEEEEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHc-C----cCCcccEEEE
Confidence 4677999999999999999988776 899999999 99998887533 488998887654 2 5678999999
Q ss_pred cccccCCcchHHHHHHHH-HHhcCCCceEEEEEeec-----------------------------cCChHHHHHHHHHhC
Q 046623 131 SDVFYDPEEMVGLGKTLK-RVCGTGRHTVVWAVSEV-----------------------------RTRTGDCLHELIMSQ 180 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~-~lL~~gG~~~i~~~~~~-----------------------------~~~~~~~~~~~~~~~ 180 (218)
..++++..+...+++++. ++|+|||.+++...... +....+.+..++++.
T Consensus 110 ~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (250)
T 2p7i_A 110 THVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRA 189 (250)
T ss_dssp ESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHT
T ss_pred hhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHC
Confidence 999999999999999999 99999995554432211 112344556666999
Q ss_pred CcEEEEE
Q 046623 181 GFRVIEL 187 (218)
Q Consensus 181 gf~~~~~ 187 (218)
||.+..+
T Consensus 190 Gf~~~~~ 196 (250)
T 2p7i_A 190 GLQVTYR 196 (250)
T ss_dssp TCEEEEE
T ss_pred CCeEEEE
Confidence 9999887
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=123.01 Aligned_cols=125 Identities=17% Similarity=0.185 Sum_probs=100.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
++.+|||+|||+|.+++.+++.++.+|+++|+++ +++.+++|++.+++.++++++.+|..+.. ..++||+|+++
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~-----~~~~fD~Vi~~ 199 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-----GENIADRILMG 199 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-----CCSCEEEEEEC
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhc-----ccCCccEEEEC
Confidence 5789999999999999999988776799999999 99999999999998877999999887654 35689999997
Q ss_pred ccccCCcchHHHHHHHHHHhcCCCceEEEEEeec----cCChHHHHHHHHHhCCcEEEEE
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV----RTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~----~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
++. ....+++.+.++|+|||.+++..+... .....+ +...+.+.||.+..+
T Consensus 200 ~p~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-i~~~~~~~G~~~~~~ 254 (278)
T 2frn_A 200 YVV----RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFET-FKRITKEYGYDVEKL 254 (278)
T ss_dssp CCS----SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHH-HHHHHHHTTCEEEEE
T ss_pred Cch----hHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHH-HHHHHHHcCCeeEEe
Confidence 663 347889999999999996555555432 223344 444448899988774
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=121.83 Aligned_cols=118 Identities=24% Similarity=0.234 Sum_probs=96.0
Q ss_pred hHHHHHHHHhcCC-CCCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 38 SALILAQFISTHF-DFQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 38 ~~~~l~~~l~~~~-~~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
....+..++.... ..++.+|||+|||+|.++..+++.+ ..+++++|+++ +++.+++++...+.. ++.+...|+...
T Consensus 21 ~~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~ 99 (276)
T 3mgg_A 21 QAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSL 99 (276)
T ss_dssp --CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGC
T ss_pred HHHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccC
Confidence 3345566665532 3567899999999999999998764 45999999999 999999999888775 489999888765
Q ss_pred CccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 115 DLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 115 ~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.. +.++||+|+++.++++..+...+++.+.++|+|||.+++.
T Consensus 100 ~~----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (276)
T 3mgg_A 100 PF----EDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVI 141 (276)
T ss_dssp CS----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred CC----CCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEE
Confidence 43 5678999999999999999999999999999999944443
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.1e-16 Score=118.53 Aligned_cols=153 Identities=14% Similarity=0.175 Sum_probs=112.0
Q ss_pred chhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 36 WDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 36 w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
++....+.+++... ..++.+|||+|||+|.++..+++.+..+++++|+++ +++.+++++..++..+ +++..+|+.+.
T Consensus 44 ~~~~~~~~~~l~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~ 121 (205)
T 3grz_A 44 HQTTQLAMLGIERA-MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLAD 121 (205)
T ss_dssp HHHHHHHHHHHHHH-CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTT
T ss_pred CccHHHHHHHHHHh-ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEecccccc
Confidence 45555566666542 236789999999999999999888777999999999 9999999999988766 89999888653
Q ss_pred CccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCCC
Q 046623 115 DLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGGG 194 (218)
Q Consensus 115 ~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~~ 194 (218)
..++||+|+++.++++ ...+++.+.++|+|||.+++ .........+ +...+.+.||.+..+...
T Consensus 122 ------~~~~fD~i~~~~~~~~---~~~~l~~~~~~L~~gG~l~~--~~~~~~~~~~-~~~~~~~~Gf~~~~~~~~---- 185 (205)
T 3grz_A 122 ------VDGKFDLIVANILAEI---LLDLIPQLDSHLNEDGQVIF--SGIDYLQLPK-IEQALAENSFQIDLKMRA---- 185 (205)
T ss_dssp ------CCSCEEEEEEESCHHH---HHHHGGGSGGGEEEEEEEEE--EEEEGGGHHH-HHHHHHHTTEEEEEEEEE----
T ss_pred ------CCCCceEEEECCcHHH---HHHHHHHHHHhcCCCCEEEE--EecCcccHHH-HHHHHHHcCCceEEeecc----
Confidence 3478999999877653 57888999999999993333 3222333444 444448999998876332
Q ss_pred CCCceeEEEecCC
Q 046623 195 CPEAFAVYELIPP 207 (218)
Q Consensus 195 ~~~~~~l~~~~~~ 207 (218)
.....+..-.++
T Consensus 186 -~~w~~~~~~~~~ 197 (205)
T 3grz_A 186 -GRWIGLAISRKH 197 (205)
T ss_dssp -TTEEEEEEEECC
T ss_pred -CCEEEEEEeccc
Confidence 234455554444
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.66 E-value=9.2e-17 Score=124.24 Aligned_cols=104 Identities=17% Similarity=0.086 Sum_probs=82.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC-CceEEEEeecCCCCccccccCCC-CcEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG-GRVEVRELVWGSDDLSQLSELGE-FDMVI 129 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~-~D~Iv 129 (218)
++.+|||+|||+|.+++.++..+..+|+++|+++ +++.+++|++.+++. .+++++.+|+.+.... ...++ ||+|+
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~~~fD~I~ 130 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ--PQNQPHFDVVF 130 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS--CCSSCCEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh--hccCCCCCEEE
Confidence 5779999999999999987777767999999999 999999999998874 4689998876543210 02467 99999
Q ss_pred EcccccCCcchHHHHHHH--HHHhcCCCceEE
Q 046623 130 MSDVFYDPEEMVGLGKTL--KRVCGTGRHTVV 159 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~--~~lL~~gG~~~i 159 (218)
++++++ ......+++.+ .++|+|||.+++
T Consensus 131 ~~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i 161 (201)
T 2ift_A 131 LDPPFH-FNLAEQAISLLCENNWLKPNALIYV 161 (201)
T ss_dssp ECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ECCCCC-CccHHHHHHHHHhcCccCCCcEEEE
Confidence 988854 56778888888 457999994333
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.66 E-value=5.3e-16 Score=123.04 Aligned_cols=129 Identities=16% Similarity=0.110 Sum_probs=94.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
++.+|||+|||+|.+++.++.. +..+|+++|+++ +++.++++++.+++.+ ++++.+|+.+.... ....++||+|++
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~-~~~~~~fD~V~~ 147 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQR-KDVRESYDIVTA 147 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTC-TTTTTCEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEeccHHHhccc-ccccCCccEEEE
Confidence 5779999999999999998754 345999999999 9999999999988764 89998877543210 001468999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELT 188 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~ 188 (218)
... .+...+++.+.++|+|||.++++..........+.... +...||.+..+.
T Consensus 148 ~~~----~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~-l~~~g~~~~~~~ 200 (240)
T 1xdz_A 148 RAV----ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKA-ITTLGGELENIH 200 (240)
T ss_dssp ECC----SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHH-HHHTTEEEEEEE
T ss_pred ecc----CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHH-HHHcCCeEeEEE
Confidence 663 67899999999999999954443221111122233333 488999988773
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=122.30 Aligned_cols=127 Identities=16% Similarity=0.168 Sum_probs=101.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.+++.+++.|+.+|+++|+|+ +++.+++|++.|++.++++++.+|..+.. ..+.||.|++
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-----~~~~~D~Vi~ 198 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-----GENIADRILM 198 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-----CCSCEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-----cccCCCEEEE
Confidence 46889999999999999999999888999999999 99999999999999999999998876543 4578999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc---CChHHHHHHHHHhCCcEEEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR---TRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~---~~~~~~~~~~~~~~gf~~~~~ 187 (218)
++|... ..++..+.++|++||.+.++...... ....+.+.....+.|+.+..+
T Consensus 199 ~~p~~~----~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~~ 254 (278)
T 3k6r_A 199 GYVVRT----HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp CCCSSG----GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred CCCCcH----HHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcEEEE
Confidence 877543 57888889999999944444333321 234455666657889887655
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-15 Score=121.48 Aligned_cols=138 Identities=21% Similarity=0.336 Sum_probs=103.6
Q ss_pred cchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 35 LWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 35 ~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
.++.+....+++... ..++.+|||+|||+|.+++.+++.++ +|+++|+++ +++.+++|+..+++. +++..+|+.+
T Consensus 103 ~~~tt~~~~~~l~~~-~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~ 178 (254)
T 2nxc_A 103 HHETTRLALKALARH-LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEA 178 (254)
T ss_dssp CSHHHHHHHHHHHHH-CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHH
T ss_pred CCHHHHHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhh
Confidence 345555566666543 24678999999999999999998887 999999999 999999999998875 7888777654
Q ss_pred CCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 114 DDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 114 ~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
. . +.++||+|+++.+.+ ....++..+.++|+|||. +++.........+....+ .+.||.+..+
T Consensus 179 ~-~----~~~~fD~Vv~n~~~~---~~~~~l~~~~~~LkpgG~--lils~~~~~~~~~v~~~l-~~~Gf~~~~~ 241 (254)
T 2nxc_A 179 A-L----PFGPFDLLVANLYAE---LHAALAPRYREALVPGGR--ALLTGILKDRAPLVREAM-AGAGFRPLEE 241 (254)
T ss_dssp H-G----GGCCEEEEEEECCHH---HHHHHHHHHHHHEEEEEE--EEEEEEEGGGHHHHHHHH-HHTTCEEEEE
T ss_pred c-C----cCCCCCEEEECCcHH---HHHHHHHHHHHHcCCCCE--EEEEeeccCCHHHHHHHH-HHCCCEEEEE
Confidence 2 1 356899999976543 357899999999999993 333333334444444444 8999998876
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.2e-15 Score=114.13 Aligned_cols=128 Identities=13% Similarity=0.059 Sum_probs=98.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..+++.+. +++++|+++ +++.++++.. .++.+..+|+.+... + ++||+|++
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~----~-~~fD~v~~ 112 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEV----P-TSIDTIVS 112 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCC----C-SCCSEEEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCC----C-CCeEEEEE
Confidence 3678999999999999999988765 999999999 9999888754 348888888876543 3 88999999
Q ss_pred cccccCCcchHH--HHHHHHHHhcCCCceEEEEEeecc---------------------------CChHHHHHHHHHhCC
Q 046623 131 SDVFYDPEEMVG--LGKTLKRVCGTGRHTVVWAVSEVR---------------------------TRTGDCLHELIMSQG 181 (218)
Q Consensus 131 ~~~~~~~~~~~~--~l~~~~~lL~~gG~~~i~~~~~~~---------------------------~~~~~~~~~~~~~~g 181 (218)
+.++++..+... +++.+.++|+|||.+++....... ....+.+..++++.|
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 192 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNG 192 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTT
T ss_pred CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCC
Confidence 999998887766 999999999999944433211100 012345566669999
Q ss_pred cEEEEEEcc
Q 046623 182 FRVIELTCQ 190 (218)
Q Consensus 182 f~~~~~~~~ 190 (218)
|.+..+...
T Consensus 193 f~v~~~~~~ 201 (220)
T 3hnr_A 193 FHVTFTRLN 201 (220)
T ss_dssp EEEEEEECS
T ss_pred CEEEEeecc
Confidence 998887544
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-15 Score=120.45 Aligned_cols=102 Identities=19% Similarity=0.175 Sum_probs=85.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC---CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG---ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~---~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.++.+|||+|||+|..++.+++.. ..+|+++|+|+ +++.|+++++..+...+++++.+|+.+.. .+.||+
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~------~~~~d~ 142 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA------IENASM 142 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC------CCSEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc------cccccc
Confidence 468899999999999999997652 24899999999 99999999998887778999999987653 356999
Q ss_pred EEEcccccCCc--chHHHHHHHHHHhcCCCceEE
Q 046623 128 VIMSDVFYDPE--EMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 128 Iv~~~~~~~~~--~~~~~l~~~~~lL~~gG~~~i 159 (218)
|+++.++++.. +...+++++.++|+|||.+++
T Consensus 143 v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii 176 (261)
T 4gek_A 143 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVL 176 (261)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEE
Confidence 99999988754 456799999999999994433
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.64 E-value=9.2e-15 Score=113.77 Aligned_cols=130 Identities=16% Similarity=0.118 Sum_probs=96.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
++.+|||+|||+|.+++.+++.. ..+++++|+++ +++.+++++..+++ .++.++.+|+.... ...+.++||+|++
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~--~~~~~~~~D~i~~ 117 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLT--DYFEDGEIDRLYL 117 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGG--GTSCTTCCSEEEE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHH--hhcCCCCCCEEEE
Confidence 46799999999999999998664 45999999999 99999999998887 46999999987632 1114578999999
Q ss_pred cccccCCc--------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEE
Q 046623 131 SDVFYDPE--------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELT 188 (218)
Q Consensus 131 ~~~~~~~~--------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~ 188 (218)
+.+..+.. ....+++.+.++|+||| .+++.+..........+.+ .+.||....+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~-~~~g~~~~~~~ 180 (214)
T 1yzh_A 118 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENG--EIHFKTDNRGLFEYSLVSF-SQYGMKLNGVW 180 (214)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTC--EEEEEESCHHHHHHHHHHH-HHHTCEEEEEE
T ss_pred ECCCCccccchhhhccCCHHHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHH-HHCCCeeeecc
Confidence 86643221 23689999999999999 3333333223333434444 78899987774
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=109.81 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=99.2
Q ss_pred HHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc
Q 046623 40 LILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS 117 (218)
Q Consensus 40 ~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (218)
..+..++.. ....++.+|||+|||+|.++..+++ +..+++++|+++ +++.++++++.+++. +++++.+|+.+ ..
T Consensus 21 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~~- 96 (183)
T 2yxd_A 21 EEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIK-NCQIIKGRAED-VL- 96 (183)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCC-SEEEEESCHHH-HG-
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEECCccc-cc-
Confidence 334444433 2335678999999999999999988 556999999999 999999999988873 58999888765 22
Q ss_pred ccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 118 QLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 118 ~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+.++||+|+++.+ .....+++.+.++ ||| .+++.........+....+ ++.||.+..+
T Consensus 97 ---~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG--~l~~~~~~~~~~~~~~~~l-~~~g~~~~~~ 154 (183)
T 2yxd_A 97 ---DKLEFNKAFIGGT----KNIEKIIEILDKK--KIN--HIVANTIVLENAAKIINEF-ESRGYNVDAV 154 (183)
T ss_dssp ---GGCCCSEEEECSC----SCHHHHHHHHHHT--TCC--EEEEEESCHHHHHHHHHHH-HHTTCEEEEE
T ss_pred ---cCCCCcEEEECCc----ccHHHHHHHHhhC--CCC--EEEEEecccccHHHHHHHH-HHcCCeEEEE
Confidence 4478999999887 6678899999988 999 3333333334455555555 8899988776
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-15 Score=122.56 Aligned_cols=119 Identities=12% Similarity=0.125 Sum_probs=93.6
Q ss_pred HHHHHhcCCCCCCCeEEEECCCCCHHHHHHHH--hCCCeEEEecCcc-hHHHHHHHHHHh-CCCCceEEEEeecCCCCcc
Q 046623 42 LAQFISTHFDFQNKSVLELGAGAGLPGLTAAR--LGATRVVLTDVKP-LLPGLINNVEAN-GLGGRVEVRELVWGSDDLS 117 (218)
Q Consensus 42 l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~--~~~~~v~~~D~~~-~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~ 117 (218)
+.+.+......++.+|||+|||+|..+..+++ .+..+|+++|+++ +++.+++++... +...+++++.+|+.+....
T Consensus 25 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~ 104 (299)
T 3g5t_A 25 FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFL 104 (299)
T ss_dssp HHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGG
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCcc
Confidence 44444443334678999999999999999985 2456999999999 999999999886 4446799999998876541
Q ss_pred c--cccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 118 Q--LSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 118 ~--~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
. ....++||+|+++.++++. +...+++.+.++|+|||.++++.
T Consensus 105 ~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 105 GADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWG 149 (299)
T ss_dssp CTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEe
Confidence 1 0012789999999999998 99999999999999999665543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-15 Score=125.66 Aligned_cols=136 Identities=23% Similarity=0.211 Sum_probs=101.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHh-----C-C-CCceEEEEeecCCCCccc--c
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEAN-----G-L-GGRVEVRELVWGSDDLSQ--L 119 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~-----~-~-~~~~~~~~~d~~~~~~~~--~ 119 (218)
.++.+|||+|||+|..+..+++. +..+|+++|+++ +++.++++++.+ + . ..++.++.+|+.+..... .
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 46789999999999999998764 345999999999 999999998765 3 2 246999999987652100 1
Q ss_pred ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccC-------------------ChHHHHHHHHHhC
Q 046623 120 SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRT-------------------RTGDCLHELIMSQ 180 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~-------------------~~~~~~~~~~~~~ 180 (218)
.+.++||+|+++.++++..+...+++.+.++|||||.+++........ ...+.+..++.+.
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 241 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEA 241 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHT
T ss_pred CCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHC
Confidence 156789999999999999999999999999999999544432222111 1224455566999
Q ss_pred CcEEEEE
Q 046623 181 GFRVIEL 187 (218)
Q Consensus 181 gf~~~~~ 187 (218)
||...++
T Consensus 242 GF~~v~~ 248 (383)
T 4fsd_A 242 GFRDVRL 248 (383)
T ss_dssp TCCCEEE
T ss_pred CCceEEE
Confidence 9986544
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.9e-15 Score=110.07 Aligned_cols=127 Identities=11% Similarity=0.034 Sum_probs=94.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|.++..+++. +..+++++|+++ +++.+++++..++...++ ++..|..+... ...++||+|+
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~---~~~~~~D~i~ 99 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFD---DVPDNPDVIF 99 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGG---GCCSCCSEEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhh---ccCCCCCEEE
Confidence 56779999999999999998866 346999999999 999999999998887567 77766543221 0127899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEc
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTC 189 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~ 189 (218)
++.++++ ..+++.+.++|+|||.+ ++..............+ ...++.+..+..
T Consensus 100 ~~~~~~~----~~~l~~~~~~L~~gG~l--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 152 (178)
T 3hm2_A 100 IGGGLTA----PGVFAAAWKRLPVGGRL--VANAVTVESEQMLWALR-KQFGGTISSFAI 152 (178)
T ss_dssp ECC-TTC----TTHHHHHHHTCCTTCEE--EEEECSHHHHHHHHHHH-HHHCCEEEEEEE
T ss_pred ECCcccH----HHHHHHHHHhcCCCCEE--EEEeeccccHHHHHHHH-HHcCCeeEEEEe
Confidence 9888766 78999999999999933 33333233344444444 788888877633
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=127.52 Aligned_cols=100 Identities=22% Similarity=0.280 Sum_probs=87.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE-
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM- 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~- 130 (218)
+++++|||||||+|.+++.+++.|+++|+++|.+++++.|+++++.|++.++++++.+|.++... .+++|+|++
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~l-----pe~~DvivsE 156 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVEL-----PEQVDAIVSE 156 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCC-----SSCEEEEECC
T ss_pred cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecC-----CccccEEEee
Confidence 67899999999999999999999999999999988778899999999999999999999877653 468999997
Q ss_pred --cccccCCcchHHHHHHHHHHhcCCCc
Q 046623 131 --SDVFYDPEEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 131 --~~~~~~~~~~~~~l~~~~~lL~~gG~ 156 (218)
...+.+...+..++....++|+|||.
T Consensus 157 ~~~~~l~~e~~l~~~l~a~~r~Lkp~G~ 184 (376)
T 4hc4_A 157 WMGYGLLHESMLSSVLHARTKWLKEGGL 184 (376)
T ss_dssp CCBTTBTTTCSHHHHHHHHHHHEEEEEE
T ss_pred cccccccccchhhhHHHHHHhhCCCCce
Confidence 34445567889999999999999993
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.63 E-value=7.1e-15 Score=116.04 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=84.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..+++.+. +++++|+++ +++.++++....+. ++.+..+|+.+... + ++||+|++
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~----~-~~fD~v~~ 107 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNI----N-RKFDLITC 107 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCC----S-CCEEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCc----c-CCceEEEE
Confidence 3678999999999999999988765 899999999 99999999887764 48888888765432 3 78999999
Q ss_pred cc-cccCC---cchHHHHHHHHHHhcCCCceEE
Q 046623 131 SD-VFYDP---EEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 131 ~~-~~~~~---~~~~~~l~~~~~lL~~gG~~~i 159 (218)
+. ++++. .+...+++.+.++|+|||.+++
T Consensus 108 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 140 (246)
T 1y8c_A 108 CLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp CTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCccccccCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 87 88887 6788999999999999995554
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.8e-16 Score=122.89 Aligned_cols=129 Identities=16% Similarity=0.088 Sum_probs=89.7
Q ss_pred CcCCCCccccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh
Q 046623 20 NVCDSVTGRPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN 98 (218)
Q Consensus 20 ~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~ 98 (218)
+.|+.....|...+...+ ..+.+++.... ..+.+|||+|||+|..+..++..+. +|+++|+|+ +++.+++.
T Consensus 9 d~F~~~a~~Y~~~Rp~yp--~~l~~~l~~~~-~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~---- 80 (257)
T 4hg2_A 9 DHFTPVADAYRAFRPRYP--RALFRWLGEVA-PARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRH---- 80 (257)
T ss_dssp -----------CCCCCCC--HHHHHHHHHHS-SCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCC----
T ss_pred HHHHHHHHHHHHHCCCcH--HHHHHHHHHhc-CCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhc----
Confidence 344544444443332222 23445555422 2356999999999999999998875 999999999 88776532
Q ss_pred CCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEee
Q 046623 99 GLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 99 ~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~ 164 (218)
.++.++.+|.++... +.++||+|++..++|+. +..+++.++.++|||||.++++....
T Consensus 81 ---~~v~~~~~~~e~~~~----~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~ 138 (257)
T 4hg2_A 81 ---PRVTYAVAPAEDTGL----PPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGL 138 (257)
T ss_dssp ---TTEEEEECCTTCCCC----CSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred ---CCceeehhhhhhhcc----cCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 458999999887665 67899999999999764 68899999999999999666665543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.9e-15 Score=120.43 Aligned_cols=105 Identities=12% Similarity=0.031 Sum_probs=88.8
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCc
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
....++.+|||+|||+|.++..+++. +. +|+++|+++ +++.++++....++.+++.+..+|+.+. + ++||
T Consensus 86 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~-~~fD 157 (318)
T 2fk8_A 86 LDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF------A-EPVD 157 (318)
T ss_dssp SCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC------C-CCCS
T ss_pred cCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC------C-CCcC
Confidence 33457789999999999999998865 65 999999999 9999999999888777789998886442 2 6899
Q ss_pred EEEEcccccCC--cchHHHHHHHHHHhcCCCceEEEE
Q 046623 127 MVIMSDVFYDP--EEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 127 ~Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+|++..++++. ++...+++.+.++|+|||.+++..
T Consensus 158 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 158 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999999887 688999999999999999555443
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.7e-15 Score=114.93 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=100.0
Q ss_pred HHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc
Q 046623 40 LILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ 118 (218)
Q Consensus 40 ~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (218)
..+..++... .++.+|||+|||+|.++..+++.+. +++++|+++ +++.++++. ++.+..+|+....
T Consensus 32 ~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~--- 98 (211)
T 3e23_A 32 ATLTKFLGEL--PAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD--- 98 (211)
T ss_dssp HHHHHHHTTS--CTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC---
T ss_pred HHHHHHHHhc--CCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC---
Confidence 3444554432 3577999999999999999988765 999999999 999998886 2556666665433
Q ss_pred cccCCCCcEEEEcccccCCc--chHHHHHHHHHHhcCCCceEEEEEeecc-----------CChHHHHHHHHHhCC-cEE
Q 046623 119 LSELGEFDMVIMSDVFYDPE--EMVGLGKTLKRVCGTGRHTVVWAVSEVR-----------TRTGDCLHELIMSQG-FRV 184 (218)
Q Consensus 119 ~~~~~~~D~Iv~~~~~~~~~--~~~~~l~~~~~lL~~gG~~~i~~~~~~~-----------~~~~~~~~~~~~~~g-f~~ 184 (218)
..++||+|+++.++++.. +...+++.+.++|+|||.+++....... ....+.+..++++.| |.+
T Consensus 99 --~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~ 176 (211)
T 3e23_A 99 --AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWAS 176 (211)
T ss_dssp --CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSE
T ss_pred --CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEE
Confidence 467899999999998876 7889999999999999944444322211 124455666669999 999
Q ss_pred EEE
Q 046623 185 IEL 187 (218)
Q Consensus 185 ~~~ 187 (218)
..+
T Consensus 177 ~~~ 179 (211)
T 3e23_A 177 VAV 179 (211)
T ss_dssp EEE
T ss_pred EEE
Confidence 887
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.7e-15 Score=116.57 Aligned_cols=126 Identities=19% Similarity=0.221 Sum_probs=100.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
++.+|||+|||+|.++..+++.+. +++++|+++ +++.++++. ...+++++.+|+.+... +.++||+|++.
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~----~~~~fD~v~~~ 123 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLPF----ENEQFEAIMAI 123 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCSS----CTTCEEEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCCC----CCCCccEEEEc
Confidence 677999999999999999988866 999999999 999988774 22458999999876543 56899999999
Q ss_pred ccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc------------------CChHHHHHHHHHhCCcEEEEE
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR------------------TRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~------------------~~~~~~~~~~~~~~gf~~~~~ 187 (218)
.++++..+...+++.+.++|+|||.+++....... ....+.+..++.+.||.+...
T Consensus 124 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 124 NSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp SCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred ChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEe
Confidence 99999999999999999999999944444322210 123345666669999999887
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.6e-15 Score=115.62 Aligned_cols=129 Identities=19% Similarity=0.202 Sum_probs=94.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..+++.+. +++++|+++ +++.++++ ..+.+...|+.+..........+||+|++
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~ 122 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPVGKDYDLICA 122 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCCCCCEEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccccCCCccEEEE
Confidence 4568999999999999999988865 999999999 99998877 23566766655431111123456999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEee----------------------------ccCChHHHHHHHHHhCCc
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE----------------------------VRTRTGDCLHELIMSQGF 182 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~----------------------------~~~~~~~~~~~~~~~~gf 182 (218)
+.+++ ..+...+++.+.++|+|||.+++..... .+....+.+..++.+.||
T Consensus 123 ~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 201 (227)
T 3e8s_A 123 NFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGL 201 (227)
T ss_dssp ESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTE
T ss_pred Cchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCC
Confidence 99998 7889999999999999999444432210 011134555555699999
Q ss_pred EEEEEEc
Q 046623 183 RVIELTC 189 (218)
Q Consensus 183 ~~~~~~~ 189 (218)
.+..+..
T Consensus 202 ~~~~~~~ 208 (227)
T 3e8s_A 202 RLVSLQE 208 (227)
T ss_dssp EEEEEEC
T ss_pred eEEEEec
Confidence 9999844
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=8.3e-15 Score=119.67 Aligned_cols=102 Identities=18% Similarity=0.195 Sum_probs=82.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC--CceEEEEeecCCCCccccccCCCCcEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG--GRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
++.+|||+|||+|.++..+++.+. +|+++|+++ +++.+++++...+.. .+++++.+|+.+.. ..++||+|+
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~fD~v~ 155 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA-----LDKRFGTVV 155 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC-----CSCCEEEEE
T ss_pred CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC-----cCCCcCEEE
Confidence 345999999999999999988865 899999999 999999998876532 45899999987653 357899988
Q ss_pred Ec-ccccCCc--chHHHHHHHHHHhcCCCceEEE
Q 046623 130 MS-DVFYDPE--EMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 130 ~~-~~~~~~~--~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+. .++++.. +...+++.+.++|+|||.+++.
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 189 (299)
T 3g2m_A 156 ISSGSINELDEADRRGLYASVREHLEPGGKFLLS 189 (299)
T ss_dssp ECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 65 4455443 4689999999999999955543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.62 E-value=9.4e-15 Score=114.15 Aligned_cols=113 Identities=20% Similarity=0.237 Sum_probs=90.5
Q ss_pred HHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc
Q 046623 40 LILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ 118 (218)
Q Consensus 40 ~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (218)
..+.+.+.... .++.+|||+|||+|..+..+++.+. +++++|+++ +++.++++...++ .+++++.+|+.+...
T Consensus 26 ~~~~~~l~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~-- 99 (227)
T 1ve3_A 26 ETLEPLLMKYM-KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSF-- 99 (227)
T ss_dssp HHHHHHHHHSC-CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCS--
T ss_pred HHHHHHHHHhc-CCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCC--
Confidence 34444444422 2477999999999999999988876 999999999 9999999998876 458999998876543
Q ss_pred cccCCCCcEEEEccc--ccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 119 LSELGEFDMVIMSDV--FYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 119 ~~~~~~~D~Iv~~~~--~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+.++||+|+++++ +++..+...+++.+.++|+|||.+++.
T Consensus 100 --~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 141 (227)
T 1ve3_A 100 --EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY 141 (227)
T ss_dssp --CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --CCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 4578999999998 555567889999999999999955444
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-14 Score=108.09 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=101.6
Q ss_pred hhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC
Q 046623 37 DSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD 115 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 115 (218)
+.+..+.+++... ..++.+|||+|||+|.++..+++.+ +++++|+++ +++. ..+++++.+|+.+..
T Consensus 8 ~~~~~l~~~l~~~-~~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~----------~~~~~~~~~d~~~~~ 74 (170)
T 3q87_B 8 EDTYTLMDALERE-GLEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES----------HRGGNLVRADLLCSI 74 (170)
T ss_dssp HHHHHHHHHHHHH-TCCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT----------CSSSCEEECSTTTTB
T ss_pred ccHHHHHHHHHhh-cCCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc----------ccCCeEEECChhhhc
Confidence 4555666665431 2356799999999999999998876 999999999 8876 245889999987632
Q ss_pred ccccccCCCCcEEEEcccccCCcc---------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEE
Q 046623 116 LSQLSELGEFDMVIMSDVFYDPEE---------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIE 186 (218)
Q Consensus 116 ~~~~~~~~~~D~Iv~~~~~~~~~~---------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~ 186 (218)
+.++||+|+++++++...+ ...+++.+.+.+ |||.+++.. .......+..+.+ .+.||....
T Consensus 75 -----~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~--~~~~~~~~l~~~l-~~~gf~~~~ 145 (170)
T 3q87_B 75 -----NQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLV--IEANRPKEVLARL-EERGYGTRI 145 (170)
T ss_dssp -----CGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEE--EGGGCHHHHHHHH-HHTTCEEEE
T ss_pred -----ccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEE--ecCCCHHHHHHHH-HHCCCcEEE
Confidence 3478999999988875433 367788888888 999443333 3334444544444 899999887
Q ss_pred EEccCCCCCCCceeEEEecCC
Q 046623 187 LTCQLGGGCPEAFAVYELIPP 207 (218)
Q Consensus 187 ~~~~~~~~~~~~~~l~~~~~~ 207 (218)
+..... ...+...++..++
T Consensus 146 ~~~~~~--~~e~~~~~~~~~~ 164 (170)
T 3q87_B 146 LKVRKI--LGETVYIIKGEKS 164 (170)
T ss_dssp EEEEEC--SSSEEEEEEEECC
T ss_pred EEeecc--CCceEEEEEEecc
Confidence 733322 2244555555555
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.7e-15 Score=120.50 Aligned_cols=107 Identities=19% Similarity=0.094 Sum_probs=89.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..+++.+..+++++|+++ +++.++++....+...++.++.+|+.+.... ..++||+|++
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~fD~v~~ 139 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD---LGKEFDVISS 139 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC---CSSCEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC---CCCCcCEEEE
Confidence 46789999999999999988887766999999999 9999999998887666789999988765421 3578999999
Q ss_pred cccccC----CcchHHHHHHHHHHhcCCCceEEEE
Q 046623 131 SDVFYD----PEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 131 ~~~~~~----~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+.++++ ..+...+++.+.++|+|||.+++..
T Consensus 140 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 174 (298)
T 1ri5_A 140 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 174 (298)
T ss_dssp ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 888865 4667899999999999999555443
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-14 Score=110.59 Aligned_cols=124 Identities=17% Similarity=0.158 Sum_probs=94.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..+++.+. +++++|+++ +++.++++. .++.+...|+..... +.++||+|++
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~~~----~~~~~D~i~~ 113 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQI----SETDFDLIVS 113 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------TTSEEEECCTTTSCC----CCCCEEEEEE
T ss_pred cCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhC------CCCcEEEcccccCCC----CCCceeEEEE
Confidence 3677999999999999999988765 999999999 999988775 237888888876543 4578999999
Q ss_pred c-ccccCC--cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 131 S-DVFYDP--EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 131 ~-~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+ +++++. +....+++.+.++|+|||.+++... ..+....+.+..++.+.||.+...
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~-~~~~~~~~~~~~~l~~~Gf~~~~~ 172 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFG-AGRGWVFGDFLEVAERVGLELENA 172 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE-TTSSCCHHHHHHHHHHHTEEEEEE
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeC-CCCCcCHHHHHHHHHHcCCEEeee
Confidence 8 566654 4568899999999999994443332 323233344444448999999887
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.8e-15 Score=115.73 Aligned_cols=101 Identities=23% Similarity=0.214 Sum_probs=83.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|..+..+++.. ..+++++|+++ +++.+++++...+ ++.++.+|+.+... . ++||+|+
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~----~-~~fD~v~ 114 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDF----E-EKYDMVV 114 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCC----C-SCEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCC----C-CCceEEE
Confidence 567899999999999999998763 45999999999 9999998876553 58999999877653 3 7899999
Q ss_pred EcccccCCcchH--HHHHHHHHHhcCCCceEEE
Q 046623 130 MSDVFYDPEEMV--GLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 130 ~~~~~~~~~~~~--~~l~~~~~lL~~gG~~~i~ 160 (218)
++.++++..+.. ++++.+.++|+|||.+++.
T Consensus 115 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 147 (234)
T 3dtn_A 115 SALSIHHLEDEDKKELYKRSYSILKESGIFINA 147 (234)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EeCccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 999998876554 5999999999999944443
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.6e-15 Score=116.61 Aligned_cols=101 Identities=20% Similarity=0.170 Sum_probs=85.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..+++.+..+++++|+++ +++.++++... .++.+..+|+..... +.++||+|++
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~----~~~~fD~v~~ 113 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHL----PQDSFDLAYS 113 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCC----CTTCEEEEEE
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccC----CCCCceEEEE
Confidence 56789999999999999999887665999999999 99998877543 248888888765443 4678999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
..++++..+...+++.+.++|+|||.+++.
T Consensus 114 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 143 (243)
T 3bkw_A 114 SLALHYVEDVARLFRTVHQALSPGGHFVFS 143 (243)
T ss_dssp ESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred eccccccchHHHHHHHHHHhcCcCcEEEEE
Confidence 999999889999999999999999955543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=115.85 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=90.5
Q ss_pred hhHHHHHHHHhc-C-CCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 37 DSALILAQFIST-H-FDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 37 ~~~~~l~~~l~~-~-~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
+....+.+.+.. . ...++.+|||+|||+|.+++.+++.+..+|+++|+++ +++.+++++..+++..+++++.+|+.+
T Consensus 26 p~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 105 (187)
T 2fhp_A 26 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR 105 (187)
T ss_dssp CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred cCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHH
Confidence 444555555443 1 2246789999999999999998877767999999999 999999999998876679999988765
Q ss_pred CCccccccCCCCcEEEEcccccCCcchHHHHHHH--HHHhcCCCceE
Q 046623 114 DDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTL--KRVCGTGRHTV 158 (218)
Q Consensus 114 ~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~--~~lL~~gG~~~ 158 (218)
.........++||+|+++++++ .......+..+ .++|+|||.++
T Consensus 106 ~~~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~ 151 (187)
T 2fhp_A 106 ALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIV 151 (187)
T ss_dssp HHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEE
Confidence 3210001257899999988854 45667777777 77899999333
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=117.43 Aligned_cols=140 Identities=16% Similarity=0.226 Sum_probs=101.6
Q ss_pred hhHHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 37 DSALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 37 ~~~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
+.+..+.+.+.. .. .++.+|||+|||+|.+++.+++. +..+++++|+++ +++.+++|+..+++. +++++.+|+.+
T Consensus 93 ~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~ 170 (276)
T 2b3t_A 93 PDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFS 170 (276)
T ss_dssp TTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTG
T ss_pred chHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhh
Confidence 334445555544 22 45679999999999999999754 456999999999 999999999998875 58999888765
Q ss_pred CCccccccCCCCcEEEEcccccCC-------------------------cchHHHHHHHHHHhcCCCceEEEEEeeccCC
Q 046623 114 DDLSQLSELGEFDMVIMSDVFYDP-------------------------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTR 168 (218)
Q Consensus 114 ~~~~~~~~~~~~D~Iv~~~~~~~~-------------------------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~ 168 (218)
.. +.++||+|++++|+... .....+++.+.++|+|||.+++ ... ..
T Consensus 171 ~~-----~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~--~~~--~~ 241 (276)
T 2b3t_A 171 AL-----AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL--EHG--WQ 241 (276)
T ss_dssp GG-----TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE--ECC--SS
T ss_pred hc-----ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEE--EEC--ch
Confidence 32 35689999999887543 2357788899999999993333 222 23
Q ss_pred hHHHHHHHHHhCCcEEEEE
Q 046623 169 TGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 169 ~~~~~~~~~~~~gf~~~~~ 187 (218)
..+.+..++.+.||....+
T Consensus 242 ~~~~~~~~l~~~Gf~~v~~ 260 (276)
T 2b3t_A 242 QGEAVRQAFILAGYHDVET 260 (276)
T ss_dssp CHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHHHHHCCCcEEEE
Confidence 3344555558889975443
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.8e-14 Score=118.58 Aligned_cols=138 Identities=16% Similarity=0.039 Sum_probs=102.2
Q ss_pred hHHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhC--CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 38 SALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLG--ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 38 ~~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~--~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
....++..+.. ....++.+|||+|||+|.+++.++..+ ..+++++|+++ +++.|++|++..++. ++++..+|+.+
T Consensus 187 l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~ 265 (354)
T 3tma_A 187 LTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARH 265 (354)
T ss_dssp CCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGG
T ss_pred cCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhh
Confidence 33445555544 233567899999999999999998653 35899999999 999999999999987 79999998876
Q ss_pred CCccccccCCCCcEEEEcccccCCc--------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEE
Q 046623 114 DDLSQLSELGEFDMVIMSDVFYDPE--------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 114 ~~~~~~~~~~~~D~Iv~~~~~~~~~--------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~ 185 (218)
... +.+.||+|++++|+.... .+..+++.+.++|+|||.+++++. ..+.++.+.. .||...
T Consensus 266 ~~~----~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~------~~~~~~~~~~-~g~~~~ 334 (354)
T 3tma_A 266 LPR----FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL------RPALLKRALP-PGFALR 334 (354)
T ss_dssp GGG----TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES------CHHHHHHHCC-TTEEEE
T ss_pred Ccc----ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC------CHHHHHHHhh-cCcEEE
Confidence 543 446689999998875421 137788999999999995444432 2244555534 788876
Q ss_pred EE
Q 046623 186 EL 187 (218)
Q Consensus 186 ~~ 187 (218)
+.
T Consensus 335 ~~ 336 (354)
T 3tma_A 335 HA 336 (354)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=118.03 Aligned_cols=102 Identities=14% Similarity=0.116 Sum_probs=86.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..+++. + ..+|+++|+++ +++.+++++...+. ++.++.+|+.+.. ..++||+|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~-----~~~~fD~v 93 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIE-----LNDKYDIA 93 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCC-----CSSCEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcC-----cCCCeeEE
Confidence 56789999999999999999765 3 25999999999 99999999877653 5899999987643 34689999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+++.++++..+...+++.+.++|+|||.+++.
T Consensus 94 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 125 (284)
T 3gu3_A 94 ICHAFLLHMTTPETMLQKMIHSVKKGGKIICF 125 (284)
T ss_dssp EEESCGGGCSSHHHHHHHHHHTEEEEEEEEEE
T ss_pred EECChhhcCCCHHHHHHHHHHHcCCCCEEEEE
Confidence 99999999999999999999999999944443
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=115.36 Aligned_cols=124 Identities=14% Similarity=0.049 Sum_probs=94.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..+++.+. +++++|+++ +++.++++ +.++.+|..+... ..+.++||+|++
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~--~~~~~~fD~i~~ 107 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLK--SLPDKYLDGVMI 107 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT---------SEEECSCHHHHHH--TSCTTCBSEEEE
T ss_pred cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh---------cceeeccHHHHhh--hcCCCCeeEEEE
Confidence 4568999999999999999988866 899999999 98887765 5666666544210 014578999999
Q ss_pred cccccCCc--chHHHHHHHHHHhcCCCceEEEEEeec---------------cCChHHHHHHHHHhCCcEEEEE
Q 046623 131 SDVFYDPE--EMVGLGKTLKRVCGTGRHTVVWAVSEV---------------RTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 131 ~~~~~~~~--~~~~~l~~~~~lL~~gG~~~i~~~~~~---------------~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+.++++.. +...+++.+.++|+|||.+++...... .....+.+..++.+.||.+..+
T Consensus 108 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 108 SHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp ESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred CCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEE
Confidence 99999877 559999999999999995555443321 1123355666669999998887
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.6e-15 Score=118.04 Aligned_cols=132 Identities=14% Similarity=0.042 Sum_probs=100.1
Q ss_pred HHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc
Q 046623 42 LAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL 119 (218)
Q Consensus 42 l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (218)
+.+.+.. ....++.+|||+|||+|..+..+++.+ .+|+++|+++ +++.++++. ++.++.+|+.+...
T Consensus 22 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~--- 90 (261)
T 3ege_A 22 IVNAIINLLNLPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLAL--- 90 (261)
T ss_dssp HHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCS---
T ss_pred HHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCC---
Confidence 3444433 233567899999999999999998865 4999999999 888765543 48999988876543
Q ss_pred ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc--------------------CChHHHHHHHHHh
Q 046623 120 SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR--------------------TRTGDCLHELIMS 179 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~--------------------~~~~~~~~~~~~~ 179 (218)
+.++||+|+++.++++..+...+++.+.++|+ ||.+++....... ....+.+. ++++
T Consensus 91 -~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ 167 (261)
T 3ege_A 91 -PDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQE 167 (261)
T ss_dssp -CTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHH
T ss_pred -CCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHH
Confidence 56899999999999999999999999999999 9966666544211 11233355 6689
Q ss_pred CCcEEEEE
Q 046623 180 QGFRVIEL 187 (218)
Q Consensus 180 ~gf~~~~~ 187 (218)
.||....+
T Consensus 168 aGF~~v~~ 175 (261)
T 3ege_A 168 NTKRRVEA 175 (261)
T ss_dssp HHCSEEEE
T ss_pred cCCCceeE
Confidence 99977665
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.60 E-value=5e-15 Score=121.40 Aligned_cols=103 Identities=15% Similarity=0.088 Sum_probs=86.6
Q ss_pred CCCCeEEEECCCCCHHHHHHH--HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAA--RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~--~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..++ ..+..+++++|+++ +++.+++++...+..++++++.+|+.+... + ++||+|
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~-~~fD~v 191 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT----R-EGYDLL 191 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC----C-SCEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc----c-CCeEEE
Confidence 467899999999999999884 44456999999999 999999999988877779999999876543 3 889999
Q ss_pred EEcccccCCcchHH---HHHHHHHHhcCCCceEE
Q 046623 129 IMSDVFYDPEEMVG---LGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 129 v~~~~~~~~~~~~~---~l~~~~~lL~~gG~~~i 159 (218)
+++.++++..+... +++.+.++|+|||.+++
T Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 225 (305)
T 3ocj_A 192 TSNGLNIYEPDDARVTELYRRFWQALKPGGALVT 225 (305)
T ss_dssp ECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 99999988766655 79999999999994433
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=120.38 Aligned_cols=133 Identities=15% Similarity=0.091 Sum_probs=96.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCC-ceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGG-RVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
++.+|||+|||+|.+++.+++.++ +|+++|+++ +++.+++|++.+++.+ ++.++.+|+.+.........++||+|++
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~ 231 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 231 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence 567999999999999999998887 999999999 9999999999998865 4899988775432110011468999999
Q ss_pred cccccCC----------cchHHHHHHHHHHhcCCCceEEEEEeeccCC---hHHHHHHHHHhCCcEEEE
Q 046623 131 SDVFYDP----------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTR---TGDCLHELIMSQGFRVIE 186 (218)
Q Consensus 131 ~~~~~~~----------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~---~~~~~~~~~~~~gf~~~~ 186 (218)
++|.+.. .+...++..+.++|+|||.+++......... ..+.+...+.+.|+.+..
T Consensus 232 dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~~ 300 (332)
T 2igt_A 232 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVAS 300 (332)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEEE
T ss_pred CCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 8885431 2467889999999999995444444332222 223333333467887753
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=109.83 Aligned_cols=127 Identities=17% Similarity=0.177 Sum_probs=98.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..+++.+. +++++|+++ +++.+++++...+.. ++.+..+|+.+.. ..++||+|++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~-----~~~~~D~v~~ 103 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLT-----FDRQYDFILS 103 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCC-----CCCCEEEEEE
T ss_pred cCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCC-----CCCCceEEEE
Confidence 4677999999999999999988765 999999999 999999999888764 3889988876543 2568999999
Q ss_pred cccccCCc--chHHHHHHHHHHhcCCCceEEEEEeec----------cCChHHHHHHHHHhCCcEEEEE
Q 046623 131 SDVFYDPE--EMVGLGKTLKRVCGTGRHTVVWAVSEV----------RTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 131 ~~~~~~~~--~~~~~l~~~~~lL~~gG~~~i~~~~~~----------~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+.++++.. +...+++.+.++|+|||.++++..... .....+.+..++.. |.+...
T Consensus 104 ~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~ 170 (199)
T 2xvm_A 104 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKY 170 (199)
T ss_dssp ESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEe
Confidence 99988765 789999999999999995444433221 11233445555343 888776
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=113.69 Aligned_cols=126 Identities=15% Similarity=0.141 Sum_probs=97.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|.+++.+++.+ ..+|+++|+++ +++.|++|++.+++.+++++..+|+..... +.++||+|+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~----~~~~~D~Iv 89 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFE----ETDQVSVIT 89 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC----GGGCCCEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcc----cCcCCCEEE
Confidence 356799999999999999999876 45899999999 999999999999998889999988754322 223799988
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELT 188 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~ 188 (218)
....-. .....+++.....|+++| .+++.+. ........++ .+.||.+....
T Consensus 90 iaG~Gg--~~i~~Il~~~~~~L~~~~--~lVlq~~--~~~~~vr~~L-~~~Gf~i~~e~ 141 (225)
T 3kr9_A 90 IAGMGG--RLIARILEEGLGKLANVE--RLILQPN--NREDDLRIWL-QDHGFQIVAES 141 (225)
T ss_dssp EEEECH--HHHHHHHHHTGGGCTTCC--EEEEEES--SCHHHHHHHH-HHTTEEEEEEE
T ss_pred EcCCCh--HHHHHHHHHHHHHhCCCC--EEEEECC--CCHHHHHHHH-HHCCCEEEEEE
Confidence 754421 336788888888999988 3333433 3455555555 99999998864
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-14 Score=109.94 Aligned_cols=135 Identities=13% Similarity=0.065 Sum_probs=99.7
Q ss_pred HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc
Q 046623 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL 119 (218)
Q Consensus 41 ~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (218)
.+..++... .++ +|||+|||+|..+..+++.+. +++++|+++ +++.++++....+. ++.+..+|+.+...
T Consensus 20 ~l~~~~~~~--~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~--- 90 (202)
T 2kw5_A 20 FLVSVANQI--PQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDI--- 90 (202)
T ss_dssp SHHHHHHHS--CSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSC---
T ss_pred HHHHHHHhC--CCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCC---
Confidence 344454432 245 999999999999999988765 999999999 99999999988765 48899888876543
Q ss_pred ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeec-------------cCChHHHHHHHHHhCCcEEEE
Q 046623 120 SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV-------------RTRTGDCLHELIMSQGFRVIE 186 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~-------------~~~~~~~~~~~~~~~gf~~~~ 186 (218)
+.++||+|+++....+..+...+++.+.++|+|||.+++...... .....+.+..++. ||.+..
T Consensus 91 -~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~ 167 (202)
T 2kw5_A 91 -VADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLI 167 (202)
T ss_dssp -CTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEE
T ss_pred -CcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEE
Confidence 457899999965433345788999999999999995544433221 1234455566534 999887
Q ss_pred E
Q 046623 187 L 187 (218)
Q Consensus 187 ~ 187 (218)
+
T Consensus 168 ~ 168 (202)
T 2kw5_A 168 A 168 (202)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-14 Score=113.37 Aligned_cols=141 Identities=12% Similarity=0.120 Sum_probs=103.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|+|+|||+|.+++.+++.+ ..+|+++|+++ +++.|++|++.+++.+++++..+|..+... +.++||+|+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~----~~~~~D~Iv 95 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFE----EADNIDTIT 95 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC----GGGCCCEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccc----cccccCEEE
Confidence 356799999999999999999876 35899999999 999999999999998889999988765532 334799988
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCCCCCCceeEEEec
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGGGCPEAFAVYELI 205 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~l~~~~ 205 (218)
+..+-. .....+++.....|+++| .+++.+. .......+++ .+.||.+.+..+-... ...+.++.+.
T Consensus 96 iaGmGg--~lI~~IL~~~~~~l~~~~--~lIlqp~--~~~~~lr~~L-~~~Gf~i~~E~lv~e~--~~~Yeii~~~ 162 (230)
T 3lec_A 96 ICGMGG--RLIADILNNDIDKLQHVK--TLVLQPN--NREDDLRKWL-AANDFEIVAEDILTEN--DKRYEILVVK 162 (230)
T ss_dssp EEEECH--HHHHHHHHHTGGGGTTCC--EEEEEES--SCHHHHHHHH-HHTTEEEEEEEEEEC----CEEEEEEEE
T ss_pred EeCCch--HHHHHHHHHHHHHhCcCC--EEEEECC--CChHHHHHHH-HHCCCEEEEEEEEEEC--CEEEEEEEEE
Confidence 644422 346778888888899888 3444433 3354555555 9999999887433221 2345554443
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=116.03 Aligned_cols=102 Identities=21% Similarity=0.171 Sum_probs=86.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..+++.+. +++++|+++ +++.+++++ . +...++.+..+|+.+... +.++||+|++
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~~~~----~~~~fD~v~~ 110 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARAIPL----PDESVHGVIV 110 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTSCCS----CTTCEEEEEE
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-h-ccCCceEEEEcccccCCC----CCCCeeEEEE
Confidence 4678999999999999999987764 999999999 999999887 2 223468999998876543 5678999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+.++++..+...+++.+.++|+|||.+++.
T Consensus 111 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 111 VHLWHLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp ESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 999999889999999999999999955554
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.7e-16 Score=119.12 Aligned_cols=146 Identities=14% Similarity=0.087 Sum_probs=83.5
Q ss_pred hhHHHHHHHHhc-CCC-CCCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecC
Q 046623 37 DSALILAQFIST-HFD-FQNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWG 112 (218)
Q Consensus 37 ~~~~~l~~~l~~-~~~-~~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~ 112 (218)
+.+..+.+++.. ... .++.+|||+|||+|.++..+++... .+++++|+++ +++.+++++..++. +++++.+|+.
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~ 89 (215)
T 4dzr_A 12 PDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGI 89 (215)
T ss_dssp HHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHH
T ss_pred ccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchH
Confidence 334445555444 222 5678999999999999999987743 4899999999 99999999988775 4778877776
Q ss_pred CCCccccccCCCCcEEEEcccccCCcch--------------------------HHHHHHHHHHhcCCCceEEEEEeecc
Q 046623 113 SDDLSQLSELGEFDMVIMSDVFYDPEEM--------------------------VGLGKTLKRVCGTGRHTVVWAVSEVR 166 (218)
Q Consensus 113 ~~~~~~~~~~~~~D~Iv~~~~~~~~~~~--------------------------~~~l~~~~~lL~~gG~~~i~~~~~~~ 166 (218)
+.........++||+|++++|++..... ..+++.+.++|+|||.++++.. . .
T Consensus 90 ~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~-~ 167 (215)
T 4dzr_A 90 EWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV-G-H 167 (215)
T ss_dssp HHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC-T-T
T ss_pred hhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE-C-C
Confidence 5211000113789999999888653322 6788888999999994233322 2 2
Q ss_pred CChHHHHHHHHH--hCCcEEEEE
Q 046623 167 TRTGDCLHELIM--SQGFRVIEL 187 (218)
Q Consensus 167 ~~~~~~~~~~~~--~~gf~~~~~ 187 (218)
... +.+..++. +.||....+
T Consensus 168 ~~~-~~~~~~l~~~~~gf~~~~~ 189 (215)
T 4dzr_A 168 NQA-DEVARLFAPWRERGFRVRK 189 (215)
T ss_dssp SCH-HHHHHHTGGGGGGTEECCE
T ss_pred ccH-HHHHHHHHHhhcCCceEEE
Confidence 333 44444447 788876554
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-14 Score=110.91 Aligned_cols=114 Identities=18% Similarity=0.130 Sum_probs=90.3
Q ss_pred chhHHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 36 WDSALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 36 w~~~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
|-....+..++.. ....++.+|||+|||+|.++..+++.+. +++++|+++ +++.++++.... .+++++.+|+.+
T Consensus 33 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~ 108 (216)
T 3ofk_A 33 PFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRW---SHISWAATDILQ 108 (216)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTC---SSEEEEECCTTT
T ss_pred HhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccC---CCeEEEEcchhh
Confidence 3333445555543 3345677999999999999999988765 999999999 999999887664 358999998876
Q ss_pred CCccccccCCCCcEEEEcccccCCcch---HHHHHHHHHHhcCCCceE
Q 046623 114 DDLSQLSELGEFDMVIMSDVFYDPEEM---VGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 114 ~~~~~~~~~~~~D~Iv~~~~~~~~~~~---~~~l~~~~~lL~~gG~~~ 158 (218)
.. +.++||+|+++.++++..+. ..+++.+.++|+|||.++
T Consensus 109 ~~-----~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~ 151 (216)
T 3ofk_A 109 FS-----TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLV 151 (216)
T ss_dssp CC-----CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred CC-----CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 54 46789999999999987766 567999999999999433
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-14 Score=110.90 Aligned_cols=98 Identities=18% Similarity=0.173 Sum_probs=82.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..+++.+. +++++|+++ +++.+++ .+. .++.++.+|+.+. . +.++||+|++
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~-~----~~~~~D~v~~ 113 (218)
T 3ou2_A 45 NIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDW-T----PDRQWDAVFF 113 (218)
T ss_dssp TSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSC-C----CSSCEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccC-C----CCCceeEEEE
Confidence 4567999999999999999988865 999999999 9988877 333 3589999988765 2 6789999999
Q ss_pred cccccCCcc--hHHHHHHHHHHhcCCCceEEE
Q 046623 131 SDVFYDPEE--MVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 131 ~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+.++++..+ ...+++.+.++|+|||.+++.
T Consensus 114 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 145 (218)
T 3ou2_A 114 AHWLAHVPDDRFEAFWESVRSAVAPGGVVEFV 145 (218)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred echhhcCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 999988776 489999999999999955544
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=110.18 Aligned_cols=135 Identities=20% Similarity=0.210 Sum_probs=99.1
Q ss_pred HHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc
Q 046623 42 LAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL 119 (218)
Q Consensus 42 l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (218)
+..++.. ....++.+|||+|||+|..+..+++.+ .+++++|+++ +++.+++++..++...++.+..+|+.+. .
T Consensus 21 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~--- 95 (192)
T 1l3i_A 21 VRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA-L--- 95 (192)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH-H---
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh-c---
Confidence 3444333 233577899999999999999998877 6999999999 9999999999888755688888776541 1
Q ss_pred ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 120 SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
...++||+|+++.+++ ....+++.+.++|+|||.+++ .........+....+ .+.||.+..+
T Consensus 96 ~~~~~~D~v~~~~~~~---~~~~~l~~~~~~l~~gG~l~~--~~~~~~~~~~~~~~l-~~~g~~~~~~ 157 (192)
T 1l3i_A 96 CKIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIV--TAILLETKFEAMECL-RDLGFDVNIT 157 (192)
T ss_dssp TTSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEE--EECBHHHHHHHHHHH-HHTTCCCEEE
T ss_pred ccCCCCCEEEECCchH---HHHHHHHHHHHhcCCCcEEEE--EecCcchHHHHHHHH-HHCCCceEEE
Confidence 1225899999987753 468999999999999993333 333233344444444 8889866554
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=121.73 Aligned_cols=102 Identities=20% Similarity=0.238 Sum_probs=89.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
.++.+|||+|||+|.++..+++.|..+|+++|++++++.|+++++.+++.++++++.+|+.+... +.++||+|+++
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD~Iis~ 140 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVEL----PVEKVDIIISE 140 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCC----SSSCEEEEEEC
T ss_pred CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccC----CCCceEEEEEc
Confidence 56789999999999999999988878999999999889999999999988889999999987654 56899999996
Q ss_pred ccc---cCCcchHHHHHHHHHHhcCCCce
Q 046623 132 DVF---YDPEEMVGLGKTLKRVCGTGRHT 157 (218)
Q Consensus 132 ~~~---~~~~~~~~~l~~~~~lL~~gG~~ 157 (218)
.+. .+......++..+.++|+|||.+
T Consensus 141 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l 169 (349)
T 3q7e_A 141 WMGYCLFYESMLNTVLHARDKWLAPDGLI 169 (349)
T ss_dssp CCBBTBTBTCCHHHHHHHHHHHEEEEEEE
T ss_pred cccccccCchhHHHHHHHHHHhCCCCCEE
Confidence 653 34578899999999999999943
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-14 Score=116.72 Aligned_cols=132 Identities=16% Similarity=0.012 Sum_probs=98.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..++.. +..+|+++|+++ +++.+++|++.+++. ++.++.+|...... ..++||+|
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~----~~~~fD~I 191 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGE----LNVEFDKI 191 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGG----GCCCEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhccc----ccccCCEE
Confidence 46789999999999999999765 235899999999 999999999999875 48888887655432 34689999
Q ss_pred EEcccccCCc------c----------------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEE
Q 046623 129 IMSDVFYDPE------E----------------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIE 186 (218)
Q Consensus 129 v~~~~~~~~~------~----------------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~ 186 (218)
+++.|+.... + ...+++.+.++|||||.+++..++......++.+..++++.+|....
T Consensus 192 l~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~~~~ 271 (315)
T 1ixk_A 192 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVELLP 271 (315)
T ss_dssp EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEEC
T ss_pred EEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCEEec
Confidence 9987753211 1 25889999999999995544444443444455666666888887765
Q ss_pred EE
Q 046623 187 LT 188 (218)
Q Consensus 187 ~~ 188 (218)
++
T Consensus 272 ~~ 273 (315)
T 1ixk_A 272 LK 273 (315)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.7e-15 Score=119.12 Aligned_cols=106 Identities=21% Similarity=0.221 Sum_probs=81.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCC----------------------------
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLG---------------------------- 101 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~---------------------------- 101 (218)
.++.+|||+|||+|..++.+++. +..+|+++|+++ +++.|++++...+..
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 46789999999999999999865 556999999999 999999987654422
Q ss_pred -----------------------------CceEEEEeecCCCCcccc-ccCCCCcEEEEcccccC------CcchHHHHH
Q 046623 102 -----------------------------GRVEVRELVWGSDDLSQL-SELGEFDMVIMSDVFYD------PEEMVGLGK 145 (218)
Q Consensus 102 -----------------------------~~~~~~~~d~~~~~~~~~-~~~~~~D~Iv~~~~~~~------~~~~~~~l~ 145 (218)
.++.+..+|+........ ...++||+|++..++++ .+....+++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 469999999876541110 14578999999988733 247889999
Q ss_pred HHHHHhcCCCce
Q 046623 146 TLKRVCGTGRHT 157 (218)
Q Consensus 146 ~~~~lL~~gG~~ 157 (218)
.+.++|+|||.+
T Consensus 205 ~~~~~LkpGG~l 216 (292)
T 3g07_A 205 RIYRHLRPGGIL 216 (292)
T ss_dssp HHHHHEEEEEEE
T ss_pred HHHHHhCCCcEE
Confidence 999999999933
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.1e-15 Score=114.99 Aligned_cols=101 Identities=18% Similarity=0.076 Sum_probs=81.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
++.+|||+|||+|.+++.+++.+..+|+++|+++ +++.+++|++.+++ .+++++.+|+.+... ...++||+|+++
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~---~~~~~fD~V~~~ 129 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLA---QKGTPHNIVFVD 129 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHS---SCCCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHh---hcCCCCCEEEEC
Confidence 5789999999999999988777767999999999 99999999999887 468999887654211 034689999998
Q ss_pred ccccCCcchHHHHHHHHH--HhcCCCceE
Q 046623 132 DVFYDPEEMVGLGKTLKR--VCGTGRHTV 158 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~--lL~~gG~~~ 158 (218)
++++ ......+++.+.+ +|+|||.++
T Consensus 130 ~p~~-~~~~~~~l~~l~~~~~L~pgG~l~ 157 (202)
T 2fpo_A 130 PPFR-RGLLEETINLLEDNGWLADEALIY 157 (202)
T ss_dssp CSSS-TTTHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCC-CCcHHHHHHHHHhcCccCCCcEEE
Confidence 8844 5677888888876 499999433
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-14 Score=112.22 Aligned_cols=153 Identities=18% Similarity=0.121 Sum_probs=103.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc--cccCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ--LSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~D 126 (218)
.++.+|||+|||+|..++.+++. + ..+|+++|+++ +++.++++++..++.++++++.+|..+..... ....++||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 35679999999999999999874 2 45999999999 99999999999998778999998864422110 00126899
Q ss_pred EEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEc-cCCCCCCCceeEEEec
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTC-QLGGGCPEAFAVYELI 205 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~-~~~~~~~~~~~l~~~~ 205 (218)
+|++....++......++..+ ++|+||| ++++.........++.+.+.....|....+|. .........+.+-.+.
T Consensus 137 ~V~~d~~~~~~~~~~~~~~~~-~~LkpgG--~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~ 213 (221)
T 3u81_A 137 MVFLDHWKDRYLPDTLLLEKC-GLLRKGT--VLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ 213 (221)
T ss_dssp EEEECSCGGGHHHHHHHHHHT-TCCCTTC--EEEESCCCCCCCHHHHHHHHHCTTEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred EEEEcCCcccchHHHHHHHhc-cccCCCe--EEEEeCCCCcchHHHHHHHhhCCCceEEEcccccccCCCCCceEEEEEe
Confidence 999976655444444566666 8999999 44444444455566666664455566666652 1222233344544444
Q ss_pred CC
Q 046623 206 PP 207 (218)
Q Consensus 206 ~~ 207 (218)
.|
T Consensus 214 g~ 215 (221)
T 3u81_A 214 GP 215 (221)
T ss_dssp CC
T ss_pred CC
Confidence 33
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-15 Score=113.36 Aligned_cols=103 Identities=20% Similarity=0.231 Sum_probs=82.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.+++.+++.+..+++++|+++ +++.++++++.+++.++++++.+|+.+... ...++||+|++
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~i~~ 106 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID---CLTGRFDLVFL 106 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH---HBCSCEEEEEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHH---hhcCCCCEEEE
Confidence 56789999999999999999887767999999999 999999999998876678999887754211 13357999999
Q ss_pred cccccCCcchHHHHHHHH--HHhcCCCceE
Q 046623 131 SDVFYDPEEMVGLGKTLK--RVCGTGRHTV 158 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~--~lL~~gG~~~ 158 (218)
+++++. .....+++.+. ++|+|||.++
T Consensus 107 ~~~~~~-~~~~~~~~~l~~~~~L~~gG~l~ 135 (177)
T 2esr_A 107 DPPYAK-ETIVATIEALAAKNLLSEQVMVV 135 (177)
T ss_dssp CCSSHH-HHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCCCc-chHHHHHHHHHhCCCcCCCcEEE
Confidence 877642 45667777777 8899999333
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-13 Score=111.37 Aligned_cols=108 Identities=22% Similarity=0.205 Sum_probs=85.6
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-CC-CeEEEecCcc-------hHHHHHHHHHHhCCCCceEEEEee-cCCCCccccc
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARL-GA-TRVVLTDVKP-------LLPGLINNVEANGLGGRVEVRELV-WGSDDLSQLS 120 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~~D~~~-------~~~~a~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~ 120 (218)
..++.+|||+|||+|.++..+++. +. .+++++|+++ +++.++++++..+...++++..+| +..... ..
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~ 118 (275)
T 3bkx_A 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLG--PI 118 (275)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCG--GG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccC--CC
Confidence 357789999999999999999866 43 5999999987 689999999887776679999887 322221 11
Q ss_pred cCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 121 ELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+.++||+|+++.++++..+...+++.+.++++|||.+++.
T Consensus 119 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~ 158 (275)
T 3bkx_A 119 ADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVA 158 (275)
T ss_dssp TTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEE
T ss_pred CCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEE
Confidence 4578999999999999888888888888888889944443
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-14 Score=116.58 Aligned_cols=127 Identities=15% Similarity=0.134 Sum_probs=91.8
Q ss_pred CCCCeEEEECCCCCHHH-HHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPG-LTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~-~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|..+ +.+++....+|+++|+++ +++.|+++++..++ ++++++.+|..+. +.++||+|+
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l------~d~~FDvV~ 193 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI------DGLEFDVLM 193 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGG------GGCCCSEEE
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhC------CCCCcCEEE
Confidence 57889999999998655 555664455999999999 99999999999888 6799999887542 357899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEc
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTC 189 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~ 189 (218)
+... .++..++++.+.+.|||||++++......+.......... ...+|.....-.
T Consensus 194 ~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~-~~~gf~~~~~~~ 249 (298)
T 3fpf_A 194 VAAL---AEPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDD-DITGFRRAGVVL 249 (298)
T ss_dssp ECTT---CSCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTG-GGTTEEEEEEEC
T ss_pred ECCC---ccCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChh-hhhhhhheeEEC
Confidence 8544 4778899999999999999555443322222111111111 345888766633
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-14 Score=109.80 Aligned_cols=129 Identities=16% Similarity=0.125 Sum_probs=92.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
++.+|||+|||+|.+++.+++. +..+++++|+++ +++.+++++..+++. ++.++.+|+.... ...+.++||.|++
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~-nv~~~~~d~~~l~--~~~~~~~~d~v~~ 114 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLT--DVFEPGEVKRVYL 114 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHH--HHCCTTSCCEEEE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCC-CEEEEeCCHHHHH--hhcCcCCcCEEEE
Confidence 4679999999999999999866 345999999999 999999999988874 4899988876521 1124578999987
Q ss_pred cccccCCc--------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 131 SDVFYDPE--------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 131 ~~~~~~~~--------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+.+..+.. ....+++.+.++|+||| .+++.+............+ .+.||....+
T Consensus 115 ~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG--~l~~~td~~~~~~~~~~~~-~~~g~~~~~~ 176 (213)
T 2fca_A 115 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGG--SIHFKTDNRGLFEYSLKSF-SEYGLLLTYV 176 (213)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSC--EEEEEESCHHHHHHHHHHH-HHHTCEEEEE
T ss_pred ECCCCCcCccccccccCcHHHHHHHHHHcCCCC--EEEEEeCCHHHHHHHHHHH-HHCCCccccc
Confidence 64322111 14689999999999999 3333333223333434444 7778887665
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-15 Score=120.66 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=97.5
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC---------------------------
Q 046623 50 FDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG--------------------------- 101 (218)
Q Consensus 50 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~--------------------------- 101 (218)
+..++.+|||||||+|..++.++..+..+|+++|+|+ +++.++++++.+...
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 3457789999999999888877777766899999999 999999877543200
Q ss_pred -CceE-EEEeecCCCCccccccCCCCcEEEEcccccCC----cchHHHHHHHHHHhcCCCceEEEEEeec----------
Q 046623 102 -GRVE-VRELVWGSDDLSQLSELGEFDMVIMSDVFYDP----EEMVGLGKTLKRVCGTGRHTVVWAVSEV---------- 165 (218)
Q Consensus 102 -~~~~-~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~----~~~~~~l~~~~~lL~~gG~~~i~~~~~~---------- 165 (218)
..+. +..+|+.+..+......++||+|+++.++++. +++..+++++.++|||||.+++......
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~ 211 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREF 211 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEe
Confidence 1132 77888776422100024689999999988762 5667899999999999994444421110
Q ss_pred --cCChHHHHHHHHHhCCcEEEEEE
Q 046623 166 --RTRTGDCLHELIMSQGFRVIELT 188 (218)
Q Consensus 166 --~~~~~~~~~~~~~~~gf~~~~~~ 188 (218)
.....+.+..++.+.||.+..+.
T Consensus 212 ~~~~~~~~~l~~~l~~aGF~i~~~~ 236 (263)
T 2a14_A 212 SCVALEKGEVEQAVLDAGFDIEQLL 236 (263)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred eccccCHHHHHHHHHHCCCEEEEEe
Confidence 11244555565699999998873
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.7e-14 Score=109.29 Aligned_cols=162 Identities=12% Similarity=0.077 Sum_probs=109.9
Q ss_pred cCcCCCCc-cccccccccchhHH-HHHHHHhc----CCCCCCCeEEEECCCCCHHHHHHHHh-CC-CeEEEecCcc-hHH
Q 046623 19 DNVCDSVT-GRPLTGAWLWDSAL-ILAQFIST----HFDFQNKSVLELGAGAGLPGLTAARL-GA-TRVVLTDVKP-LLP 89 (218)
Q Consensus 19 ~~~~~~~~-~~~~~g~~~w~~~~-~l~~~l~~----~~~~~~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~~D~~~-~~~ 89 (218)
..||+.-. ...-..|..|+--. .|+..+.. .+..+|.+|||+|||+|.++..+++. |. .+|+++|+++ +++
T Consensus 37 ~~vyge~~~~~~~~e~r~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~ 116 (233)
T 4df3_A 37 QRVYGERIFRYNGEEYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMR 116 (233)
T ss_dssp CCSSSCCEEEETTEEEEECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHH
T ss_pred CcccCceEEEcCCceeeeECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHH
Confidence 45665531 11224678888544 45555544 33468999999999999999999864 43 6899999999 999
Q ss_pred HHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeec----
Q 046623 90 GLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV---- 165 (218)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~---- 165 (218)
.++++++.. .++..+.+|....... ....+.+|+|++.. .+..+...++.++.+.|||||.+++......
T Consensus 117 ~l~~~a~~~---~ni~~V~~d~~~p~~~-~~~~~~vDvVf~d~--~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~ 190 (233)
T 4df3_A 117 DLLTVVRDR---RNIFPILGDARFPEKY-RHLVEGVDGLYADV--AQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVT 190 (233)
T ss_dssp HHHHHSTTC---TTEEEEESCTTCGGGG-TTTCCCEEEEEECC--CCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHH
T ss_pred HHHHhhHhh---cCeeEEEEeccCcccc-ccccceEEEEEEec--cCChhHHHHHHHHHHhccCCCEEEEEEecccCCCC
Confidence 998887554 3578888776654321 12457899998743 2346778899999999999995555432211
Q ss_pred ---cCChHHHHHHHHHhCCcEEEEE
Q 046623 166 ---RTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 166 ---~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
.....+..+.+ .+.||.+.+.
T Consensus 191 ~p~~~~~~~ev~~L-~~~GF~l~e~ 214 (233)
T 4df3_A 191 TEPSEVYKREIKTL-MDGGLEIKDV 214 (233)
T ss_dssp TCCCHHHHHHHHHH-HHTTCCEEEE
T ss_pred CChHHHHHHHHHHH-HHCCCEEEEE
Confidence 11133445555 8899998776
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=109.07 Aligned_cols=121 Identities=11% Similarity=0.123 Sum_probs=93.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..+++.+. +++++|+++ +++.++++ ..++.+...| ... +.++||+|++
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~v~~~~~d---~~~----~~~~~D~v~~ 81 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK------FDSVITLSDP---KEI----PDNSVDFILF 81 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH------CTTSEEESSG---GGS----CTTCEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh------CCCcEEEeCC---CCC----CCCceEEEEE
Confidence 4667999999999999999988776 999999999 99998887 1458888877 211 5578999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc---------CChHHHHHHHHHhCCcEEEEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR---------TRTGDCLHELIMSQGFRVIELT 188 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~---------~~~~~~~~~~~~~~gf~~~~~~ 188 (218)
+.++++..+...+++.+.++|+|||.+++....... ....+.+..++. ||.+.++.
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~ 146 (170)
T 3i9f_A 82 ANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRF 146 (170)
T ss_dssp ESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEE
T ss_pred ccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEcc
Confidence 999999999999999999999999954444322211 123445555534 99988873
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-14 Score=119.52 Aligned_cols=104 Identities=19% Similarity=0.254 Sum_probs=88.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
..++.+|||+|||+|.++..+++.|..+|+++|++++++.++++++.+++.++++++.+|+.+... +.++||+|++
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~Ivs 137 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHL----PVEKVDVIIS 137 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCC----SCSCEEEEEE
T ss_pred hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcC----CCCcEEEEEE
Confidence 357889999999999999999988777999999999888899999999887789999999876543 4578999998
Q ss_pred ccc---ccCCcchHHHHHHHHHHhcCCCceE
Q 046623 131 SDV---FYDPEEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 131 ~~~---~~~~~~~~~~l~~~~~lL~~gG~~~ 158 (218)
+.+ +.+......++..+.++|+|||.++
T Consensus 138 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 138 EWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred cCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 763 4455678889999999999999443
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-14 Score=113.75 Aligned_cols=126 Identities=8% Similarity=-0.006 Sum_probs=96.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|.+++.+++.+. .+|+++|+++ +++.|++|++.+++.+++++..+|..+... +.++||+|+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~----~~~~~D~Iv 95 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIE----KKDAIDTIV 95 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC----GGGCCCEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccC----ccccccEEE
Confidence 3567999999999999999998764 5899999999 999999999999998889999988765432 334699988
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELT 188 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~ 188 (218)
+...-. .....+++.....|++++ .+++.+. .......+++ .+.||.+....
T Consensus 96 iagmGg--~lI~~IL~~~~~~L~~~~--~lIlq~~--~~~~~lr~~L-~~~Gf~i~~E~ 147 (244)
T 3gnl_A 96 IAGMGG--TLIRTILEEGAAKLAGVT--KLILQPN--IAAWQLREWS-EQNNWLITSEA 147 (244)
T ss_dssp EEEECH--HHHHHHHHHTGGGGTTCC--EEEEEES--SCHHHHHHHH-HHHTEEEEEEE
T ss_pred EeCCch--HHHHHHHHHHHHHhCCCC--EEEEEcC--CChHHHHHHH-HHCCCEEEEEE
Confidence 644321 346778888888898877 4444443 3455555555 89999987653
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.4e-14 Score=110.49 Aligned_cols=98 Identities=13% Similarity=0.094 Sum_probs=81.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
++.+|||+|||+|..+..+++. .+++++|+++ +++.++++....+ .++.+..+|+.+.. ..++||+|++.
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~-----~~~~fD~v~~~ 103 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELE-----LPEPVDAITIL 103 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCC-----CSSCEEEEEEC
T ss_pred CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcC-----CCCCcCEEEEe
Confidence 4579999999999999998776 5999999999 9999999988766 34888888876543 23789999997
Q ss_pred c-cccCC---cchHHHHHHHHHHhcCCCceEE
Q 046623 132 D-VFYDP---EEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 132 ~-~~~~~---~~~~~~l~~~~~lL~~gG~~~i 159 (218)
. ++++. .+...+++.+.++|+|||.+++
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 104 CDSLNYLQTEADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp TTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCchhhcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 5 77765 5678899999999999995554
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=111.42 Aligned_cols=120 Identities=17% Similarity=0.148 Sum_probs=92.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
++.+|||+|||+|.++..++.. +..+++++|+++ +++.+++++...+..+ +++..+|+.+.. +.++||+|++
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-----~~~~~D~i~~ 138 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFP-----SEPPFDGVIS 138 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSC-----CCSCEEEEEC
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCC-----ccCCcCEEEE
Confidence 5779999999999999999865 446999999999 9999999999888765 899998887643 3468999998
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELT 188 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~ 188 (218)
+.. .....+++.+.++|+|||.+++.. . ....+.+..+ .. ||.+..+.
T Consensus 139 ~~~----~~~~~~l~~~~~~L~~gG~l~~~~--~--~~~~~~~~~~-~~-g~~~~~~~ 186 (207)
T 1jsx_A 139 RAF----ASLNDMVSWCHHLPGEQGRFYALK--G--QMPEDEIALL-PE-EYQVESVV 186 (207)
T ss_dssp SCS----SSHHHHHHHHTTSEEEEEEEEEEE--S--SCCHHHHHTS-CT-TEEEEEEE
T ss_pred ecc----CCHHHHHHHHHHhcCCCcEEEEEe--C--CCchHHHHHH-hc-CCceeeee
Confidence 543 567899999999999999333332 2 2234455555 23 89887763
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=9.6e-15 Score=116.72 Aligned_cols=139 Identities=12% Similarity=0.075 Sum_probs=100.9
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCC----------------------------
Q 046623 50 FDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGL---------------------------- 100 (218)
Q Consensus 50 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~---------------------------- 100 (218)
+..++.+|||+|||+|..+..++..+..+|+++|+++ +++.+++++...+.
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 4456789999999999999988877656899999999 99999888755321
Q ss_pred CCce-EEEEeecCCCCccccccCCCCcEEEEccccc----CCcchHHHHHHHHHHhcCCCceEEEEEe------------
Q 046623 101 GGRV-EVRELVWGSDDLSQLSELGEFDMVIMSDVFY----DPEEMVGLGKTLKRVCGTGRHTVVWAVS------------ 163 (218)
Q Consensus 101 ~~~~-~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~----~~~~~~~~l~~~~~lL~~gG~~~i~~~~------------ 163 (218)
..++ .+..+|+.+.........++||+|+++.+++ +..+...+++.+.++|+|||.+++....
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~ 212 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKF 212 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccc
Confidence 0126 8888888765421001227899999999988 5567899999999999999954443311
Q ss_pred eccCChHHHHHHHHHhCCcEEEEEE
Q 046623 164 EVRTRTGDCLHELIMSQGFRVIELT 188 (218)
Q Consensus 164 ~~~~~~~~~~~~~~~~~gf~~~~~~ 188 (218)
..+....+.+..++.+.||.+..+.
T Consensus 213 ~~~~~~~~~~~~~l~~aGf~~~~~~ 237 (265)
T 2i62_A 213 SSLPLGWETVRDAVEEAGYTIEQFE 237 (265)
T ss_dssp ECCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred cccccCHHHHHHHHHHCCCEEEEEE
Confidence 1112234455666699999998873
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-14 Score=115.33 Aligned_cols=98 Identities=16% Similarity=0.088 Sum_probs=82.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..+++.+ .+|+++|+++ +++.++++. .++.+..+|+.... ..++||+|++
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~-----~~~~fD~v~~ 123 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKARQNY------PHLHFDVADARNFR-----VDKPLDAVFS 123 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCC-----CSSCEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCC-----cCCCcCEEEE
Confidence 467799999999999999998854 4999999999 999988764 34788888887643 3468999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+.++++..+...+++.+.++|+|||.+++..
T Consensus 124 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 154 (279)
T 3ccf_A 124 NAMLHWVKEPEAAIASIHQALKSGGRFVAEF 154 (279)
T ss_dssp ESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cchhhhCcCHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999998999999999999999999555443
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.9e-14 Score=112.35 Aligned_cols=95 Identities=13% Similarity=-0.035 Sum_probs=79.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
++.+|||+|||+|.++..+++.+. +++++|+++ +++.++++.. ++.++.+|+.+.. ..++||+|+++
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~-----~~~~fD~v~~~ 117 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP------DAVLHHGDMRDFS-----LGRRFSAVTCM 117 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCC-----CSCCEEEEEEC
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------CCEEEECChHHCC-----ccCCcCEEEEc
Confidence 567999999999999999988765 899999999 9999888742 4889998887654 35789999998
Q ss_pred c-cccCC---cchHHHHHHHHHHhcCCCceEE
Q 046623 132 D-VFYDP---EEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 132 ~-~~~~~---~~~~~~l~~~~~lL~~gG~~~i 159 (218)
. ++++. ++...+++.+.++|+|||.+++
T Consensus 118 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i 149 (263)
T 3pfg_A 118 FSSIGHLAGQAELDAALERFAAHVLPDGVVVV 149 (263)
T ss_dssp TTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CchhhhcCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 7 88876 4677889999999999995544
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=112.48 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=83.6
Q ss_pred CCCCeEEEECCCCCHHHHH-HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLT-AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~-l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|..+.. ++..+ .+++++|+++ +++.++++....+ .++.+..+|+.+... +.++||+|+
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~----~~~~fD~v~ 94 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDG-YKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLPF----KDESMSFVY 94 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTT-CEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCCS----CTTCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCCC----CCCceeEEE
Confidence 4567999999999987544 44544 4999999999 9999999988776 348888888876543 467899999
Q ss_pred EcccccCC--cchHHHHHHHHHHhcCCCceEEEE
Q 046623 130 MSDVFYDP--EEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 130 ~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
++.++++. .+...+++.+.++|+|||.+++..
T Consensus 95 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 95 SYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp ECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 99888887 778999999999999999555443
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=114.45 Aligned_cols=142 Identities=13% Similarity=0.035 Sum_probs=98.8
Q ss_pred HHHHHHhcC-CCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHH----------hC------CCC
Q 046623 41 ILAQFISTH-FDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEA----------NG------LGG 102 (218)
Q Consensus 41 ~l~~~l~~~-~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~----------~~------~~~ 102 (218)
.+.+++... ...++.+|||+|||+|..+..+++.|. +|+++|+|+ +++.+++.... .+ ...
T Consensus 55 ~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (252)
T 2gb4_A 55 LLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSG 133 (252)
T ss_dssp HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTS
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCC
Confidence 455555431 113677999999999999999998877 999999999 99998765421 00 124
Q ss_pred ceEEEEeecCCCCccccccCCCCcEEEEcccccCC--cchHHHHHHHHHHhcCCCceEEEEEeec--------cCChHHH
Q 046623 103 RVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP--EEMVGLGKTLKRVCGTGRHTVVWAVSEV--------RTRTGDC 172 (218)
Q Consensus 103 ~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~~~~~--------~~~~~~~ 172 (218)
+++++.+|+.+.... ..++||+|++..++++. ++...+++.+.++|+|||.+++++.... .....+.
T Consensus 134 ~i~~~~~D~~~l~~~---~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~e 210 (252)
T 2gb4_A 134 SISLYCCSIFDLPRA---NIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAE 210 (252)
T ss_dssp SEEEEESCTTTGGGG---CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHH
T ss_pred ceEEEECccccCCcc---cCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHH
Confidence 589999998775431 12789999988777654 3567899999999999995544432211 0123455
Q ss_pred HHHHHHhCCcEEEEE
Q 046623 173 LHELIMSQGFRVIEL 187 (218)
Q Consensus 173 ~~~~~~~~gf~~~~~ 187 (218)
+..++.. +|.+...
T Consensus 211 l~~~l~~-~f~v~~~ 224 (252)
T 2gb4_A 211 LKRLFGT-KCSMQCL 224 (252)
T ss_dssp HHHHHTT-TEEEEEE
T ss_pred HHHHhhC-CeEEEEE
Confidence 5555454 6988776
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-13 Score=114.21 Aligned_cols=132 Identities=14% Similarity=0.182 Sum_probs=102.5
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCc
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
....++.+|||+|||+|..+..+++.. ..+++++|+ + +++.++++++..+..++++++.+|+.+... ..+|
T Consensus 186 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~D 258 (359)
T 1x19_A 186 AKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY------PEAD 258 (359)
T ss_dssp CCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC------CCCS
T ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC------CCCC
Confidence 333567899999999999999997653 458999999 8 999999999988887789999999876532 2349
Q ss_pred EEEEcccccCCcc--hHHHHHHHHHHhcCCCceEEEEEee--------------------ccC----ChHHHHHHHHHhC
Q 046623 127 MVIMSDVFYDPEE--MVGLGKTLKRVCGTGRHTVVWAVSE--------------------VRT----RTGDCLHELIMSQ 180 (218)
Q Consensus 127 ~Iv~~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~~~~~--------------------~~~----~~~~~~~~~~~~~ 180 (218)
+|++..++++..+ ..++++.+.++|+|||.+++.-... .+. ...+.+..++++.
T Consensus 259 ~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~a 338 (359)
T 1x19_A 259 AVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESL 338 (359)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHH
T ss_pred EEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHC
Confidence 9999999988766 8899999999999999554443211 111 3344555666889
Q ss_pred CcEEEEE
Q 046623 181 GFRVIEL 187 (218)
Q Consensus 181 gf~~~~~ 187 (218)
||...++
T Consensus 339 Gf~~v~~ 345 (359)
T 1x19_A 339 GYKDVTM 345 (359)
T ss_dssp TCEEEEE
T ss_pred CCceEEE
Confidence 9998877
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=116.09 Aligned_cols=126 Identities=21% Similarity=0.244 Sum_probs=97.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..+++.+. +|+++|+++ +++.+++++..++. ++.+..+|+.... ..++||+|++
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-----~~~~fD~i~~ 190 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL--NISTALYDINAAN-----IQENYDFIVS 190 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCC-----CCSCEEEEEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC--ceEEEEecccccc-----ccCCccEEEE
Confidence 3678999999999999999998876 999999999 99999999998886 5899998876543 3578999999
Q ss_pred cccccCC--cchHHHHHHHHHHhcCCCceEEEEEeecc----------CChHHHHHHHHHhCCcEEEEE
Q 046623 131 SDVFYDP--EEMVGLGKTLKRVCGTGRHTVVWAVSEVR----------TRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 131 ~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~~~~~~----------~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+.++++. +....+++.+.++|+|||.++++...... ....+.+..++ .+|.+...
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~ 257 (286)
T 3m70_A 191 TVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYY--KDWEFLEY 257 (286)
T ss_dssp CSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHT--TTSEEEEE
T ss_pred ccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHh--cCCEEEEE
Confidence 9999875 45679999999999999955554432211 11234455552 34887766
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=109.42 Aligned_cols=109 Identities=22% Similarity=0.236 Sum_probs=84.4
Q ss_pred HHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccc
Q 046623 42 LAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLS 120 (218)
Q Consensus 42 l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (218)
+..++......++.+|||+|||+|..+..+++.+. +++++|+++ +++.++++....+. ++.++.+|+.+..
T Consensus 30 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~----- 101 (252)
T 1wzn_A 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIA----- 101 (252)
T ss_dssp HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCC-----
T ss_pred HHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcc-----
Confidence 34444433335678999999999999999988765 999999999 99999999988764 4889988876543
Q ss_pred cCCCCcEEEEcc-ccc--CCcchHHHHHHHHHHhcCCCceE
Q 046623 121 ELGEFDMVIMSD-VFY--DPEEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 121 ~~~~~D~Iv~~~-~~~--~~~~~~~~l~~~~~lL~~gG~~~ 158 (218)
..++||+|++.. .++ +.++...+++.+.++|+|||.++
T Consensus 102 ~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li 142 (252)
T 1wzn_A 102 FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142 (252)
T ss_dssp CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 236799999752 222 23567889999999999999544
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.55 E-value=5e-14 Score=112.30 Aligned_cols=124 Identities=18% Similarity=0.157 Sum_probs=96.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
..++.+|||+|||+|.++..+++. + ..+++++|+++ +++.++++++.+++.+++++..+|+.+.. +.++||+
T Consensus 91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~D~ 165 (255)
T 3mb5_A 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI-----EEENVDH 165 (255)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC-----CCCSEEE
T ss_pred CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhcc-----CCCCcCE
Confidence 357889999999999999999876 4 46999999999 99999999999998877999998876432 4567999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCC--cEEEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQG--FRVIEL 187 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~g--f~~~~~ 187 (218)
|+++. .+...+++.+.++|+|||.++++ ........+....+ .+.| |...++
T Consensus 166 v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~--~~~~~~~~~~~~~l-~~~g~~f~~~~~ 219 (255)
T 3mb5_A 166 VILDL-----PQPERVVEHAAKALKPGGFFVAY--TPCSNQVMRLHEKL-REFKDYFMKPRT 219 (255)
T ss_dssp EEECS-----SCGGGGHHHHHHHEEEEEEEEEE--ESSHHHHHHHHHHH-HHTGGGBSCCEE
T ss_pred EEECC-----CCHHHHHHHHHHHcCCCCEEEEE--ECCHHHHHHHHHHH-HHcCCCccccEE
Confidence 99843 45578999999999999944333 23223444555555 8888 876554
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.1e-14 Score=108.97 Aligned_cols=95 Identities=19% Similarity=0.083 Sum_probs=80.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
++.+|||+|||+|..+..+ +..+++++|+++ +++.++++. .++.++.+|+.+... +.++||+|+++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~----~~~~fD~v~~~ 102 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPF----PGESFDVVLLF 102 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCS----CSSCEEEEEEE
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCC----CCCcEEEEEEc
Confidence 7789999999999988877 444899999999 999988775 347888888776543 56789999999
Q ss_pred ccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.++++..+..++++.+.++|+|||.+++.
T Consensus 103 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 131 (211)
T 2gs9_A 103 TTLEFVEDVERVLLEARRVLRPGGALVVG 131 (211)
T ss_dssp SCTTTCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ChhhhcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 99999999999999999999999944443
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.55 E-value=4e-14 Score=119.47 Aligned_cols=112 Identities=21% Similarity=0.197 Sum_probs=91.7
Q ss_pred HHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCcccc
Q 046623 41 ILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQL 119 (218)
Q Consensus 41 ~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (218)
.+.+++.+ ....++.+|||+|||+|.+++.+++.|+.+|+++|++++++.++++++.+++.++++++.+|+.+...
T Consensus 50 ~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--- 126 (376)
T 3r0q_C 50 AYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISL--- 126 (376)
T ss_dssp HHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCC---
T ss_pred HHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCc---
Confidence 34445544 33467889999999999999999988878999999998889999999999998889999999876543
Q ss_pred ccCCCCcEEEEcccccC---CcchHHHHHHHHHHhcCCCce
Q 046623 120 SELGEFDMVIMSDVFYD---PEEMVGLGKTLKRVCGTGRHT 157 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~~~---~~~~~~~l~~~~~lL~~gG~~ 157 (218)
+ ++||+|+++.+.+. ......++..+.++|+|||.+
T Consensus 127 -~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~l 165 (376)
T 3r0q_C 127 -P-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVM 165 (376)
T ss_dssp -S-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEE
T ss_pred -C-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEE
Confidence 3 78999999654443 356888999999999999933
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-14 Score=120.89 Aligned_cols=136 Identities=18% Similarity=0.098 Sum_probs=97.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCC-CCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGL-GGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|.+++.+++.++.+|+++|+++ +++.+++|++.+++ ..+++++.+|+.+..........+||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 46789999999999999999988777999999999 99999999999998 54689999887654221101146899999
Q ss_pred EcccccCC---------cchHHHHHHHHHHhcCCCceEEEEEeeccC--ChHHHHHHHHHhCCcEEEEE
Q 046623 130 MSDVFYDP---------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRT--RTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 130 ~~~~~~~~---------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~--~~~~~~~~~~~~~gf~~~~~ 187 (218)
+++|.+.. .....++..+.++|+|||.+++.++..... ...+.+...+.+.|+.+..+
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i 367 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 98876432 457788999999999999333333222111 12333443335666544443
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-13 Score=113.48 Aligned_cols=132 Identities=14% Similarity=0.109 Sum_probs=103.3
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCc
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
....+..+|||+|||+|..+..+++. +..+++++|+ + +++.+++++...++.++++++.+|+.+. . +. .||
T Consensus 198 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~----p~-~~D 270 (369)
T 3gwz_A 198 YDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFET-I----PD-GAD 270 (369)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTC-C----CS-SCS
T ss_pred CCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCC-C----CC-Cce
Confidence 33345689999999999999998765 3458999999 8 9999999999888878899999998732 2 33 799
Q ss_pred EEEEcccccCCcchH--HHHHHHHHHhcCCCceEEEEEeecc--------------------CChHHHHHHHHHhCCcEE
Q 046623 127 MVIMSDVFYDPEEMV--GLGKTLKRVCGTGRHTVVWAVSEVR--------------------TRTGDCLHELIMSQGFRV 184 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~--~~l~~~~~lL~~gG~~~i~~~~~~~--------------------~~~~~~~~~~~~~~gf~~ 184 (218)
+|++..++++..+.. .+++.+.++|+|||.+++.-..... ....+.+..++++.||..
T Consensus 271 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 350 (369)
T 3gwz_A 271 VYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRV 350 (369)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEE
T ss_pred EEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeE
Confidence 999999998876654 7999999999999955554322211 123455666679999999
Q ss_pred EEE
Q 046623 185 IEL 187 (218)
Q Consensus 185 ~~~ 187 (218)
.++
T Consensus 351 ~~~ 353 (369)
T 3gwz_A 351 ERS 353 (369)
T ss_dssp EEE
T ss_pred EEE
Confidence 888
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-13 Score=106.74 Aligned_cols=129 Identities=15% Similarity=0.144 Sum_probs=90.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|.++..+++. +..+|+++|+++ +++.++++++.+ .++.++.+|....... ....++||+|+
T Consensus 73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~-~~~~~~~D~v~ 148 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEY-ANIVEKVDVIY 148 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGG-TTTSCCEEEEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccc-cccCccEEEEE
Confidence 46789999999999999999866 546999999999 999999887654 4588998887762110 00226899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCC-------hHHHHHHHHHhCCcEEEEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTR-------TGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~-------~~~~~~~~~~~~gf~~~~~ 187 (218)
.. + ........+++.+.++|+|||.+++......... ..+.+. .+.+.||.+..+
T Consensus 149 ~~-~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~ 210 (230)
T 1fbn_A 149 ED-V-AQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDE 210 (230)
T ss_dssp EC-C-CSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEE
T ss_pred Ee-c-CChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEE
Confidence 42 1 1223347789999999999995555422111111 224455 448889988776
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-13 Score=112.69 Aligned_cols=128 Identities=19% Similarity=0.164 Sum_probs=101.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
+..+|||+|||+|..+..+++. +..+++++|+ + +++.+++++...++.+++++..+|+.+. . +. +||+|++
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~----p~-~~D~v~~ 241 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDP-L----PA-GAGGYVL 241 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C----CC-SCSEEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCC-C----CC-CCcEEEE
Confidence 4579999999999999998754 4468999999 8 9999999999888878899999998732 2 23 7999999
Q ss_pred cccccCCcc--hHHHHHHHHHHhcCCCceEEEEEeec------------------cCChHHHHHHHHHhCCcEEEEE
Q 046623 131 SDVFYDPEE--MVGLGKTLKRVCGTGRHTVVWAVSEV------------------RTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 131 ~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~~~~~~------------------~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
..++|+.++ ..++++++.++|+|||.+++.-.... +....+.+..++++.||...++
T Consensus 242 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 318 (332)
T 3i53_A 242 SAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAA 318 (332)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEE
T ss_pred ehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 999998766 48999999999999995554422110 1223455666679999999887
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.4e-13 Score=112.95 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=98.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
..++.+|||+| |+|.+++.++..+. .+|+++|+++ +++.+++|++.+++. +++++.+|+.+.... ...++||+|
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~--~~~~~fD~V 245 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPD--YALHKFDTF 245 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCT--TTSSCBSEE
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchh--hccCCccEE
Confidence 34678999999 99999999988765 6999999999 999999999999876 699999998763210 023589999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChH--HHHHHHHH-hCCcEEEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTG--DCLHELIM-SQGFRVIEL 187 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~--~~~~~~~~-~~gf~~~~~ 187 (218)
++++|++.. ....+++.+.++|+|||.++++.......... ..+...+. ..||.+..+
T Consensus 246 i~~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~ 306 (373)
T 2qm3_A 246 ITDPPETLE-AIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVITDI 306 (373)
T ss_dssp EECCCSSHH-HHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEEEE
T ss_pred EECCCCchH-HHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcchhhh
Confidence 998887543 36889999999999999655554433112221 34445446 788877554
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=9.7e-14 Score=112.82 Aligned_cols=98 Identities=21% Similarity=0.313 Sum_probs=80.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCC---cEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEF---DMV 128 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---D~I 128 (218)
++.+|||+|||+|.+++.+++.+..+|+++|+++ +++.+++|+..+++.++++++.+|+.+.. .++| |+|
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~------~~~f~~~D~I 196 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF------KEKFASIEMI 196 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG------GGGTTTCCEE
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc------ccccCCCCEE
Confidence 5579999999999999999876546999999999 99999999999998777999999987632 1467 999
Q ss_pred EEcccccCCc-------------------chHHHHHHHH-HHhcCCCc
Q 046623 129 IMSDVFYDPE-------------------EMVGLGKTLK-RVCGTGRH 156 (218)
Q Consensus 129 v~~~~~~~~~-------------------~~~~~l~~~~-~lL~~gG~ 156 (218)
++|+|+.... +...+++.+. +.++|||.
T Consensus 197 vsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~ 244 (284)
T 1nv8_A 197 LSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKI 244 (284)
T ss_dssp EECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCE
T ss_pred EEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCE
Confidence 9998775321 1126888999 99999993
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.1e-14 Score=116.75 Aligned_cols=102 Identities=23% Similarity=0.283 Sum_probs=86.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
.++.+|||+|||+|.++..+++.+..+|+++|++++++.++++++.+++.++++++.+|+.+... +.++||+|++.
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~Ivs~ 112 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHL----PFPKVDIIISE 112 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCC----SSSCEEEEEEC
T ss_pred cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccC----CCCcccEEEEe
Confidence 46789999999999999999988877999999998888899999999988889999999877643 45789999997
Q ss_pred cccc---CCcchHHHHHHHHHHhcCCCce
Q 046623 132 DVFY---DPEEMVGLGKTLKRVCGTGRHT 157 (218)
Q Consensus 132 ~~~~---~~~~~~~~l~~~~~lL~~gG~~ 157 (218)
.+.+ +...+..++..+.++|+|||.+
T Consensus 113 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 141 (328)
T 1g6q_1 113 WMGYFLLYESMMDTVLYARDHYLVEGGLI 141 (328)
T ss_dssp CCBTTBSTTCCHHHHHHHHHHHEEEEEEE
T ss_pred CchhhcccHHHHHHHHHHHHhhcCCCeEE
Confidence 5433 4567889999999999999944
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-14 Score=117.95 Aligned_cols=114 Identities=28% Similarity=0.295 Sum_probs=87.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
++.+|||+|||+|.++..+++.+. .+++++|+++ +++.+++++..++.. ..+...|..+. ..++||+|++
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~------~~~~fD~Iv~ 267 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSE------VKGRFDMIIS 267 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTT------CCSCEEEEEE
T ss_pred CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEcccccc------ccCCeeEEEE
Confidence 466999999999999999987764 4899999999 999999999988865 56777776543 3468999999
Q ss_pred cccccC-----CcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHH
Q 046623 131 SDVFYD-----PEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHEL 176 (218)
Q Consensus 131 ~~~~~~-----~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~ 176 (218)
++++++ ......+++.+.++|+|||.++++.. . .......+...
T Consensus 268 ~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~-~-~~~~~~~l~~~ 316 (343)
T 2pjd_A 268 NPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN-A-FLPYPDVLDET 316 (343)
T ss_dssp CCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE-T-TSSHHHHHHHH
T ss_pred CCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc-C-CCCcHHHHHHh
Confidence 999875 24568899999999999994444433 2 22334445554
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.5e-15 Score=111.41 Aligned_cols=129 Identities=12% Similarity=-0.023 Sum_probs=95.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
+..+|||+|||+|.+++.++.. +..+|+++|+|+ +++.++.++..+|...++.+ .|.... .+.++||+|++
T Consensus 49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~-----~~~~~~DvVLa 121 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD-----VYKGTYDVVFL 121 (200)
T ss_dssp CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH-----HTTSEEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc-----CCCCCcChhhH
Confidence 4679999999999999999754 334999999999 99999999999988755655 443222 26678999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEe--e-------ccCChHHHHHHHHHhCCcEEEEEEcc
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVS--E-------VRTRTGDCLHELIMSQGFRVIELTCQ 190 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~--~-------~~~~~~~~~~~~~~~~gf~~~~~~~~ 190 (218)
...+|...+.+..+..+.+.|+||| +++..+ . ....-...++..+.+..+.+.+..+.
T Consensus 122 ~k~LHlL~~~~~al~~v~~~L~pgg--vfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~~ 188 (200)
T 3fzg_A 122 LKMLPVLKQQDVNILDFLQLFHTQN--FVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVIG 188 (200)
T ss_dssp ETCHHHHHHTTCCHHHHHHTCEEEE--EEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEET
T ss_pred hhHHHhhhhhHHHHHHHHHHhCCCC--EEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeeeC
Confidence 9999988777777789999999999 555444 1 11234444555545666666655443
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.1e-14 Score=107.83 Aligned_cols=110 Identities=18% Similarity=0.087 Sum_probs=85.5
Q ss_pred HHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc
Q 046623 40 LILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ 118 (218)
Q Consensus 40 ~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (218)
......+......++.+|||+|||+|..+..+++.+ .+|+++|+++ +++.+++++...+.. ++++..+|+.....
T Consensus 64 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~-- 139 (210)
T 3lbf_A 64 YMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQ-- 139 (210)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCG--
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCc--
Confidence 333333333344678899999999999999998885 4999999999 999999999988876 58999988766443
Q ss_pred cccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 119 LSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 119 ~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
..++||+|+++.++++..+ .+.++|+|||.+++.+
T Consensus 140 --~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~ 174 (210)
T 3lbf_A 140 --ARAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPV 174 (210)
T ss_dssp --GGCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEE
T ss_pred --cCCCccEEEEccchhhhhH------HHHHhcccCcEEEEEE
Confidence 4578999999888766543 5788999999444443
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-13 Score=107.66 Aligned_cols=155 Identities=17% Similarity=0.112 Sum_probs=104.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..+++. + ..+|+++|+++ +++.++++++..++.++++++.+|..+.... ....++||+|
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~-~~~~~~fD~V 140 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLES-LGECPAFDLI 140 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHT-CCSCCCCSEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHh-cCCCCCeEEE
Confidence 35679999999999999999865 2 45999999999 9999999999999887899999887543211 1123589999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccC--------------ChHHHHHHHHHhCCcEEEEE-EccCCC
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRT--------------RTGDCLHELIMSQGFRVIEL-TCQLGG 193 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~--------------~~~~~~~~~~~~~gf~~~~~-~~~~~~ 193 (218)
++... ......+++.+.++|+||| ++++...... ...++.+.+.....|....+ |+ ..+
T Consensus 141 ~~d~~---~~~~~~~l~~~~~~LkpGG--~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~ 214 (248)
T 3tfw_A 141 FIDAD---KPNNPHYLRWALRYSRPGT--LIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTV-GTK 214 (248)
T ss_dssp EECSC---GGGHHHHHHHHHHTCCTTC--EEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEC-STT
T ss_pred EECCc---hHHHHHHHHHHHHhcCCCe--EEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecC-CCC
Confidence 98553 3556789999999999999 3343332211 13445555544556777666 33 222
Q ss_pred CCCCceeEEEecCC-ccccccc
Q 046623 194 GCPEAFAVYELIPP-MHEENFH 214 (218)
Q Consensus 194 ~~~~~~~l~~~~~~-~~~~~~~ 214 (218)
....+.+.++++. .++--||
T Consensus 215 -~~DG~~i~~~~~~~~~~~~~~ 235 (248)
T 3tfw_A 215 -GWDGFTLAWVNAAENLYFQSH 235 (248)
T ss_dssp -CSEEEEEEEECCC--------
T ss_pred -CCCeeEEEEEeCCcchHhHhc
Confidence 2355666666665 4444444
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-13 Score=109.03 Aligned_cols=124 Identities=22% Similarity=0.143 Sum_probs=95.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHh-CCCCceEEEEeecCCCCccccccCCCCc
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEAN-GLGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
..++.+|||+|||+|.++..+++. + ..+++++|+++ +++.++++++.+ + ..++.+...|+.+... +.++||
T Consensus 94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~----~~~~~D 168 (258)
T 2pwy_A 94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAEL----EEAAYD 168 (258)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCC----CTTCEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCC----CCCCcC
Confidence 357789999999999999999866 4 45999999999 999999999887 6 4568999888765532 456899
Q ss_pred EEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+|+++. .+...+++.+.++|+|||.++++. .......+....+ .+.||...++
T Consensus 169 ~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~--~~~~~~~~~~~~l-~~~gf~~~~~ 221 (258)
T 2pwy_A 169 GVALDL-----MEPWKVLEKAALALKPDRFLVAYL--PNITQVLELVRAA-EAHPFRLERV 221 (258)
T ss_dssp EEEEES-----SCGGGGHHHHHHHEEEEEEEEEEE--SCHHHHHHHHHHH-TTTTEEEEEE
T ss_pred EEEECC-----cCHHHHHHHHHHhCCCCCEEEEEe--CCHHHHHHHHHHH-HHCCCceEEE
Confidence 999842 456789999999999999444433 3223455555665 7889986654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-13 Score=106.95 Aligned_cols=134 Identities=19% Similarity=0.154 Sum_probs=97.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccccc-CCCCcE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSE-LGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~D~ 127 (218)
.++.+|||+|||+|..+..+++. + ..+++++|+++ +++.+++++...++.++++++.+|..+........ .++||+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 35679999999999999999866 2 35999999999 99999999999998878999998875432110001 267999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccC--------------ChHHHHHHHHHhCCcEEEEEEcc
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRT--------------RTGDCLHELIMSQGFRVIELTCQ 190 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~--------------~~~~~~~~~~~~~gf~~~~~~~~ 190 (218)
|++..+ ......+++.+.++|+||| ++++...... ...++.+.+.....|....+|+.
T Consensus 137 v~~d~~---~~~~~~~l~~~~~~L~pgG--~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~ 208 (223)
T 3duw_A 137 IFIDAD---KQNNPAYFEWALKLSRPGT--VIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTV 208 (223)
T ss_dssp EEECSC---GGGHHHHHHHHHHTCCTTC--EEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred EEEcCC---cHHHHHHHHHHHHhcCCCc--EEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEecc
Confidence 998655 2456789999999999999 4443333221 13455666544556777766763
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.5e-13 Score=102.87 Aligned_cols=123 Identities=21% Similarity=0.186 Sum_probs=92.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..++.+|||+|||+|.++..+++.+..+++++|+++ +++.++++++.+++ +++++.+|+.+. ..+||+|+
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~-------~~~~D~v~ 117 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF-------NSRVDIVI 117 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC-------CCCCSEEE
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHc-------CCCCCEEE
Confidence 356789999999999999999888766899999999 99999999988876 589998887653 24799999
Q ss_pred EcccccCC--cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 130 MSDVFYDP--EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 130 ~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+++|++.. .....+++.+.+++ |+ ++ +.... .....+.+...+.+.||.+..+
T Consensus 118 ~~~p~~~~~~~~~~~~l~~~~~~l--~~-~~-~~~~~-~~~~~~~~~~~l~~~g~~~~~~ 172 (207)
T 1wy7_A 118 MNPPFGSQRKHADRPFLLKAFEIS--DV-VY-SIHLA-KPEVRRFIEKFSWEHGFVVTHR 172 (207)
T ss_dssp ECCCCSSSSTTTTHHHHHHHHHHC--SE-EE-EEEEC-CHHHHHHHHHHHHHTTEEEEEE
T ss_pred EcCCCccccCCchHHHHHHHHHhc--Cc-EE-EEEeC-CcCCHHHHHHHHHHCCCeEEEE
Confidence 99998754 34567888888887 43 22 22211 1233344455558899987665
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-13 Score=109.50 Aligned_cols=107 Identities=12% Similarity=0.066 Sum_probs=86.1
Q ss_pred HHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccccc
Q 046623 44 QFISTHFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSE 121 (218)
Q Consensus 44 ~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 121 (218)
.++......++.+|||+|||+|.++..+++. +..+++++|+++ +++.++++. .++.+..+|+.... +
T Consensus 24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~-----~ 92 (259)
T 2p35_A 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL------PNTNFGKADLATWK-----P 92 (259)
T ss_dssp HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS------TTSEEEECCTTTCC-----C
T ss_pred HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------CCcEEEECChhhcC-----c
Confidence 3444333456789999999999999998765 345899999999 999988771 45889998876543 3
Q ss_pred CCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 122 LGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 122 ~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
.++||+|+++.++++..+...+++.+.++|+|||.+++..
T Consensus 93 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 93 AQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp SSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence 5789999999999999999999999999999999555443
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.4e-14 Score=113.72 Aligned_cols=136 Identities=12% Similarity=0.056 Sum_probs=97.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..++.. +..+|+++|+++ +++.+++|++..++. +++++..|............++||+|
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhccccCCEE
Confidence 46789999999999999998763 336999999999 999999999998875 58888877654321000015689999
Q ss_pred EEcccccCC------------------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHh-CCcEEEEEE
Q 046623 129 IMSDVFYDP------------------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMS-QGFRVIELT 188 (218)
Q Consensus 129 v~~~~~~~~------------------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~-~gf~~~~~~ 188 (218)
+++.|+... .....+++.+.++|+|||.+++..++......++.+..++.+ .+|....++
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~~~~~~~~~~ 239 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVELIIIK 239 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHCSSEEEECCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhCCCcEEecCc
Confidence 998776432 345789999999999999554444444444445666666544 456655443
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-14 Score=115.11 Aligned_cols=136 Identities=15% Similarity=0.165 Sum_probs=93.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh-----------------CCC------------
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN-----------------GLG------------ 101 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~-----------------~~~------------ 101 (218)
.++.+|||+|||+|.....++..+..+|+++|+++ +++.++++++.. +..
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 46789999999999966555554445999999999 999888765321 100
Q ss_pred CceEEEEeecCCC-Cccc-cccCCCCcEEEEcccccC----CcchHHHHHHHHHHhcCCCceEEEEEee-----------
Q 046623 102 GRVEVRELVWGSD-DLSQ-LSELGEFDMVIMSDVFYD----PEEMVGLGKTLKRVCGTGRHTVVWAVSE----------- 164 (218)
Q Consensus 102 ~~~~~~~~d~~~~-~~~~-~~~~~~~D~Iv~~~~~~~----~~~~~~~l~~~~~lL~~gG~~~i~~~~~----------- 164 (218)
..+.++.+|+... .... ..+.++||+|+++.++++ .+++..+++.+.++|||||.+++.....
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~ 229 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL 229 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeee
Confidence 0145666677652 2110 113467999999999887 5578999999999999999555532111
Q ss_pred -ccCChHHHHHHHHHhCCcEEEEE
Q 046623 165 -VRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 165 -~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
.+....+.+..++.+.||.+..+
T Consensus 230 ~~~~~~~~~l~~~l~~aGf~~~~~ 253 (289)
T 2g72_A 230 TVVPVSEEEVREALVRSGYKVRDL 253 (289)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred eeccCCHHHHHHHHHHcCCeEEEe
Confidence 11224455666669999998876
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-13 Score=110.93 Aligned_cols=124 Identities=18% Similarity=0.083 Sum_probs=93.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|.+++.+++. +..+|+++|+++ +++.+++|++.+++.+ +.++.+|+.+. . ..++||+|+
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~-~~~~~~d~~~~-~----~~~~~D~Vi 191 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNN-VIPILADNRDV-E----LKDVADRVI 191 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSS-EEEEESCGGGC-C----CTTCEEEEE
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEECChHHc-C----ccCCceEEE
Confidence 46789999999999999999876 456999999999 9999999999998864 78998887655 2 246799999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc---CChHHHHHHHHHhCCcEEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR---TRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~---~~~~~~~~~~~~~~gf~~~ 185 (218)
++++. ...+++..+.++|+|||.+++.+..... ....+.++.+-...++.+.
T Consensus 192 ~d~p~----~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (272)
T 3a27_A 192 MGYVH----KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLI 246 (272)
T ss_dssp ECCCS----SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEE
T ss_pred ECCcc----cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeE
Confidence 98774 6678999999999999954444433322 2233445555233455544
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-13 Score=110.83 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=94.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|.++..+++. + ..+++++|+++ +++.++++++..++..++.+..+|+.+. . +.++||+|
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~----~~~~~D~V 185 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-F----DEKDVDAL 185 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-C----SCCSEEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-c----cCCccCEE
Confidence 56789999999999999999876 4 46999999999 9999999999888756689998887654 2 44689999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+++. ++...+++.+.++|+|||.+++. ........+....+ .+.||...++
T Consensus 186 ~~~~-----~~~~~~l~~~~~~L~pgG~l~~~--~~~~~~~~~~~~~l-~~~gf~~~~~ 236 (277)
T 1o54_A 186 FLDV-----PDPWNYIDKCWEALKGGGRFATV--CPTTNQVQETLKKL-QELPFIRIEV 236 (277)
T ss_dssp EECC-----SCGGGTHHHHHHHEEEEEEEEEE--ESSHHHHHHHHHHH-HHSSEEEEEE
T ss_pred EECC-----cCHHHHHHHHHHHcCCCCEEEEE--eCCHHHHHHHHHHH-HHCCCceeEE
Confidence 9843 45578999999999999943333 33223344555555 7899987665
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-14 Score=110.80 Aligned_cols=129 Identities=15% Similarity=0.146 Sum_probs=91.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
++.+|||||||+|..+..+++.. ..+|+++|+++ +++.+++++..+++.+ +.++.+|..+... ...+.+++|.|++
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~n-v~~~~~Da~~~l~-~~~~~~~~d~v~~ 111 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSN-LRVMCHDAVEVLH-KMIPDNSLRMVQL 111 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSS-EEEECSCHHHHHH-HHSCTTCEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHH-HHcCCCChheEEE
Confidence 46799999999999999998664 35899999999 9999999999888764 8999888654311 1125678999998
Q ss_pred c--ccccCCcch------HHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEE
Q 046623 131 S--DVFYDPEEM------VGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 131 ~--~~~~~~~~~------~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~ 185 (218)
+ +++...... ..+++.+.++|+||| .+++.+....+.+.....+-...+|...
T Consensus 112 ~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG--~l~i~td~~~~~~~~~~~~~~~~~~~~~ 172 (218)
T 3dxy_A 112 FFPDPWHKARHNKRRIVQVPFAELVKSKLQLGG--VFHMATDWEPYAEHMLEVMSSIDGYKNL 172 (218)
T ss_dssp ESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEE--EEEEEESCHHHHHHHHHHHHTSTTEEEC
T ss_pred eCCCCccchhhhhhhhhhHHHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHhCCCcccc
Confidence 7 444322221 359999999999999 4444444344444444444223456543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-14 Score=121.39 Aligned_cols=132 Identities=14% Similarity=0.011 Sum_probs=93.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCC-ceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGG-RVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|.+++.+++.++.+|+++|+++ +++.|++|++.+++.. +++++.+|+.+..........+||+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 46789999999999999999987777999999999 9999999999999865 699999887653211111235899999
Q ss_pred EcccccC-----C----cchHHHHHHHHHHhcCCCceEEEEEeeccCC----hHHHHHHHHHhCCcEEE
Q 046623 130 MSDVFYD-----P----EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTR----TGDCLHELIMSQGFRVI 185 (218)
Q Consensus 130 ~~~~~~~-----~----~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~----~~~~~~~~~~~~gf~~~ 185 (218)
+++|.+. . ..+.+++..+.++|+|||. ++++...... ..+.+.....+.|..+.
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~--l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~ 357 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGL--IIASTNAANMTVSQFKKQIEKGFGKQKHTYL 357 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEE--EEEEECCTTSCHHHHHHHHHHHHTTCCCEEE
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcE--EEEEeCCCcCCHHHHHHHHHHHHHHcCCcEE
Confidence 9888742 1 2245577788899999993 3333332222 22333333356666633
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=9.1e-15 Score=115.76 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=81.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||||||+|..+..+++....+++++|+++ +++.|+++....+ .++.++.+|+...... .+.++||.|+.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~--~~~~~FD~i~~ 134 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPT--LPDGHFDGILY 134 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGG--SCTTCEEEEEE
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhccc--ccccCCceEEE
Confidence 47889999999999999999877666899999999 9999999987766 3477887776543211 15678999986
Q ss_pred ccc-----ccCCcchHHHHHHHHHHhcCCCceEE
Q 046623 131 SDV-----FYDPEEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 131 ~~~-----~~~~~~~~~~l~~~~~lL~~gG~~~i 159 (218)
... ..+..+...+++++.++|||||.+.+
T Consensus 135 D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f 168 (236)
T 3orh_A 135 DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred eeeecccchhhhcchhhhhhhhhheeCCCCEEEE
Confidence 432 33456788999999999999994433
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-14 Score=107.50 Aligned_cols=100 Identities=24% Similarity=0.226 Sum_probs=79.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
++.+|||+|||+|..+..+++.+. +++++|+++ +++.+++++..++. ++++...|+.+.........++||+|+++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 678999999999999999998876 599999999 99999999998876 58888877754321100012479999998
Q ss_pred ccccCCcchHHHHHHHH--HHhcCCCce
Q 046623 132 DVFYDPEEMVGLGKTLK--RVCGTGRHT 157 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~--~lL~~gG~~ 157 (218)
++++ .....+++.+. ++|+|||.+
T Consensus 118 ~~~~--~~~~~~~~~~~~~~~L~~gG~~ 143 (171)
T 1ws6_A 118 PPYA--MDLAALFGELLASGLVEAGGLY 143 (171)
T ss_dssp CCTT--SCTTHHHHHHHHHTCEEEEEEE
T ss_pred CCCc--hhHHHHHHHHHhhcccCCCcEE
Confidence 8876 56677788887 899999933
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-13 Score=105.89 Aligned_cols=134 Identities=13% Similarity=0.059 Sum_probs=93.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|.++..+++. +..+|+++|+++ +++.+.++.+.+ .++.++.+|+.+..... ...++||+|
T Consensus 76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~-~~~~~~D~V 151 (233)
T 2ipx_A 76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYR-MLIAMVDVI 151 (233)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGG-GGCCCEEEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhc-ccCCcEEEE
Confidence 46789999999999999999765 336999999999 888888887765 45899998887642111 135689999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeec---cCC----hHHHHHHHHHhCCcEEEEE-EccCC
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV---RTR----TGDCLHELIMSQGFRVIEL-TCQLG 192 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~---~~~----~~~~~~~~~~~~gf~~~~~-~~~~~ 192 (218)
+++.+ .......++..+.++|+|||.+++.+.... ... ..+.+..+ .+.||.+.++ +..+.
T Consensus 152 ~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gf~~~~~~~~~~~ 220 (233)
T 2ipx_A 152 FADVA--QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKM-QQENMKPQEQLTLEPY 220 (233)
T ss_dssp EECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTT-GGGTEEEEEEEECTTT
T ss_pred EEcCC--CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHH-HHCCCceEEEEecCCc
Confidence 99655 334446678889999999995555332210 001 12224444 8889998875 54443
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5e-14 Score=114.43 Aligned_cols=106 Identities=18% Similarity=0.200 Sum_probs=83.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC---CceEEEEeecCCCCccccccCCCCcE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG---GRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.++.+|||+|||+|..+..++..+. +|+++|+++ +++.++++....+.. .++.+..+|+..... ...+.++||+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~fD~ 133 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK-DVPAGDGFDA 133 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH-HSCCTTCEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc-ccccCCCeEE
Confidence 4677999999999999999998876 999999999 999999887543322 236777777654320 0015678999
Q ss_pred EEEc-ccccCCcc-------hHHHHHHHHHHhcCCCceEE
Q 046623 128 VIMS-DVFYDPEE-------MVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 128 Iv~~-~~~~~~~~-------~~~~l~~~~~lL~~gG~~~i 159 (218)
|++. .++++..+ ...+++.+.++|+|||.+++
T Consensus 134 V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (293)
T 3thr_A 134 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 173 (293)
T ss_dssp EEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred EEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 9998 88888877 99999999999999994443
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.2e-14 Score=108.01 Aligned_cols=111 Identities=13% Similarity=0.109 Sum_probs=86.5
Q ss_pred HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc
Q 046623 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL 119 (218)
Q Consensus 41 ~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (218)
.+..++... ..++.+|||+|||+|.++..+++.+..+++++|+++ +++.++++.... .++.+..+|+.+...
T Consensus 31 ~~~~~l~~~-~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~---~~i~~~~~d~~~~~~--- 103 (215)
T 2pxx_A 31 SFRALLEPE-LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV---PQLRWETMDVRKLDF--- 103 (215)
T ss_dssp HHHHHHGGG-CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC---TTCEEEECCTTSCCS---
T ss_pred HHHHHHHHh-cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccC---CCcEEEEcchhcCCC---
Confidence 455555542 246779999999999999999888766899999999 999999887541 458899988876543
Q ss_pred ccCCCCcEEEEcccccCC---------------cchHHHHHHHHHHhcCCCceEE
Q 046623 120 SELGEFDMVIMSDVFYDP---------------EEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~~~~---------------~~~~~~l~~~~~lL~~gG~~~i 159 (218)
+.++||+|+++.++++. .+...+++.+.++|+|||.+++
T Consensus 104 -~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 157 (215)
T 2pxx_A 104 -PSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFIS 157 (215)
T ss_dssp -CSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -CCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEE
Confidence 45789999998877432 3568899999999999993333
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.5e-14 Score=127.74 Aligned_cols=147 Identities=18% Similarity=0.149 Sum_probs=106.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC-CceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG-GRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|.+++.+++.|+.+|+++|+|+ +++.+++|++.|++. .+++++.+|+.+.... ..++||+|+
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~---~~~~fD~Ii 614 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLRE---ANEQFDLIF 614 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHH---CCCCEEEEE
T ss_pred cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHh---cCCCccEEE
Confidence 36789999999999999999988887899999999 999999999999987 5799999887653211 346899999
Q ss_pred EcccccCC-----------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCC----C
Q 046623 130 MSDVFYDP-----------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGG----G 194 (218)
Q Consensus 130 ~~~~~~~~-----------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~----~ 194 (218)
+++|.+.. ..+..++..+.++|+|||.++ ++...+... .....+ .+.|+....+.....+ .
T Consensus 615 ~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~--~s~~~~~~~-~~~~~l-~~~g~~~~~i~~~~lp~df~~ 690 (703)
T 3v97_A 615 IDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIM--FSNNKRGFR-MDLDGL-AKLGLKAQEITQKTLSQDFAR 690 (703)
T ss_dssp ECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEE--EEECCTTCC-CCHHHH-HHTTEEEEECTTTTCCGGGTT
T ss_pred ECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEE--EEECCcccc-cCHHHH-HHcCCceeeeeeccCCCCCCC
Confidence 98886531 346778999999999999333 333321111 112333 6788887676333222 3
Q ss_pred CCCceeEEEec
Q 046623 195 CPEAFAVYELI 205 (218)
Q Consensus 195 ~~~~~~l~~~~ 205 (218)
.+....+|.++
T Consensus 691 ~~~ih~~w~i~ 701 (703)
T 3v97_A 691 NRQIHNCWLIT 701 (703)
T ss_dssp CSSCCEEEEEE
T ss_pred CCcceEEEEEe
Confidence 45667777764
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-13 Score=112.19 Aligned_cols=131 Identities=17% Similarity=0.193 Sum_probs=101.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..+++. +..+++++|++.+++.+++++...++.++++++.+|+.+... .+.||+|++
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~D~v~~ 238 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDY-----GNDYDLVLL 238 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCC-----CSCEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCC-----CCCCcEEEE
Confidence 46679999999999999998765 345999999998888899999888877779999999876532 234999999
Q ss_pred cccccCC--cchHHHHHHHHHHhcCCCceEEEEEeec-----------------------cCChHHHHHHHHHhCCcEEE
Q 046623 131 SDVFYDP--EEMVGLGKTLKRVCGTGRHTVVWAVSEV-----------------------RTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 131 ~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~~~~~-----------------------~~~~~~~~~~~~~~~gf~~~ 185 (218)
..++++. ++...+++.+.++|+|||.+++.-.... +....+.+..++++.||...
T Consensus 239 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~ 318 (335)
T 2r3s_A 239 PNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHS 318 (335)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEE
T ss_pred cchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCee
Confidence 9999887 4557999999999999995544422111 11224556666689999988
Q ss_pred EE
Q 046623 186 EL 187 (218)
Q Consensus 186 ~~ 187 (218)
++
T Consensus 319 ~~ 320 (335)
T 2r3s_A 319 QL 320 (335)
T ss_dssp EE
T ss_pred eE
Confidence 87
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.1e-14 Score=110.34 Aligned_cols=104 Identities=15% Similarity=0.085 Sum_probs=83.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-cccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-LSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|..+..+++.+. +|+++|+++ +++.++++... .++.++.+|+.+..... ......||+|+
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~d~v~ 129 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA----ANISYRLLDGLVPEQAAQIHSEIGDANIY 129 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC----TTEEEEECCTTCHHHHHHHHHHHCSCEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc----cCceEEECcccccccccccccccCccEEE
Confidence 4677999999999999999998877 899999999 99999887622 35899998887654311 11123599999
Q ss_pred EcccccCCc--chHHHHHHHHHHhcCCCceEEE
Q 046623 130 MSDVFYDPE--EMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 130 ~~~~~~~~~--~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
++.++++.. +...+++.+.++|+|||.+++.
T Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 162 (245)
T 3ggd_A 130 MRTGFHHIPVEKRELLGQSLRILLGKQGAMYLI 162 (245)
T ss_dssp EESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEE
T ss_pred EcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 999998876 7899999999999999944444
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=8.5e-15 Score=115.65 Aligned_cols=103 Identities=13% Similarity=0.143 Sum_probs=79.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..+++.+..+|+++|+++ +++.++++.+..+ .++.++.+|+.+... ..+.++||+|++
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~--~~~~~~fD~V~~ 134 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAP--TLPDGHFDGILY 134 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGG--GSCTTCEEEEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhc--ccCCCceEEEEE
Confidence 35779999999999999999876666899999999 9999999887666 458888888765411 014578999999
Q ss_pred -cccc----cCCcchHHHHHHHHHHhcCCCceE
Q 046623 131 -SDVF----YDPEEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 131 -~~~~----~~~~~~~~~l~~~~~lL~~gG~~~ 158 (218)
...+ .+......+++.+.++|||||.++
T Consensus 135 d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~ 167 (236)
T 1zx0_A 135 DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT 167 (236)
T ss_dssp CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEE
T ss_pred CCcccchhhhhhhhHHHHHHHHHHhcCCCeEEE
Confidence 3322 123345578999999999999433
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.3e-14 Score=109.61 Aligned_cols=116 Identities=18% Similarity=0.181 Sum_probs=88.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccccc-CCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSE-LGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~D~Iv 129 (218)
.++.+|||+|||+|.++..+++.+. +|+++|+++ +++.++++. .+++++.+|+.+... .. .++||+|+
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~---~~~~~~fD~v~ 116 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANA------PHADVYEWNGKGELP---AGLGAPFGLIV 116 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHC------TTSEEEECCSCSSCC---TTCCCCEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhC------CCceEEEcchhhccC---CcCCCCEEEEE
Confidence 4678999999999999999988865 999999999 999998871 458999999853321 13 57899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
++ .+...+++.+.++|+|||.++ .........+....+ .+.||....+
T Consensus 117 ~~------~~~~~~l~~~~~~LkpgG~l~---~~~~~~~~~~~~~~l-~~~Gf~~~~~ 164 (226)
T 3m33_A 117 SR------RGPTSVILRLPELAAPDAHFL---YVGPRLNVPEVPERL-AAVGWDIVAE 164 (226)
T ss_dssp EE------SCCSGGGGGHHHHEEEEEEEE---EEESSSCCTHHHHHH-HHTTCEEEEE
T ss_pred eC------CCHHHHHHHHHHHcCCCcEEE---EeCCcCCHHHHHHHH-HHCCCeEEEE
Confidence 86 356788899999999999333 222223344544444 8999998776
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.7e-13 Score=112.30 Aligned_cols=124 Identities=17% Similarity=0.122 Sum_probs=94.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|.+++.++..+. .+++++|+++ +++.+++|++.+++.+++++..+|+.+... +.++||+|+
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~----~~~~fD~Ii 291 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQ----YVDSVDFAI 291 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGG----TCSCEEEEE
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCc----ccCCcCEEE
Confidence 4678999999999999999988765 3899999999 999999999999986679999998876543 457899999
Q ss_pred EcccccCC----cc----hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 130 MSDVFYDP----EE----MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 130 ~~~~~~~~----~~----~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+++|+... .. ...+++.+.++| +|..+++++ . .+.+...+.+.||...+.
T Consensus 292 ~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~-----~-~~~~~~~~~~~G~~~~~~ 349 (373)
T 3tm4_A 292 SNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT-----E-KKAIEEAIAENGFEIIHH 349 (373)
T ss_dssp EECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES-----C-HHHHHHHHHHTTEEEEEE
T ss_pred ECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC-----C-HHHHHHHHHHcCCEEEEE
Confidence 99887542 11 366778888877 443343332 1 233444557889998776
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.7e-14 Score=116.83 Aligned_cols=118 Identities=16% Similarity=0.160 Sum_probs=91.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
++.+|||+|||+|.+++. ++ ++.+|+++|+++ +++.+++|++.+++..++.++.+|..+.. ++||+|+++
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-------~~fD~Vi~d 265 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-------VKGNRVIMN 265 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-------CCEEEEEEC
T ss_pred CCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-------CCCcEEEEC
Confidence 678999999999999999 87 677999999999 99999999999998667999998876532 679999997
Q ss_pred ccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhC-CcEEEEE
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQ-GFRVIEL 187 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~-gf~~~~~ 187 (218)
+|.+. ..+++.+.++|+|||.+++..+... .....+.+ .+. ++.+..+
T Consensus 266 pP~~~----~~~l~~~~~~L~~gG~l~~~~~~~~---~~~~~~~l-~~~~~~~i~~~ 314 (336)
T 2yx1_A 266 LPKFA----HKFIDKALDIVEEGGVIHYYTIGKD---FDKAIKLF-EKKCDCEVLEK 314 (336)
T ss_dssp CTTTG----GGGHHHHHHHEEEEEEEEEEEEESS---SHHHHHHH-HHHSEEEEEEE
T ss_pred CcHhH----HHHHHHHHHHcCCCCEEEEEEeecC---chHHHHHH-HHhcCCcEEEE
Confidence 66442 4889999999999994444444332 33444444 554 6665444
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.9e-13 Score=110.63 Aligned_cols=130 Identities=18% Similarity=0.179 Sum_probs=101.6
Q ss_pred CCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 54 NKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
+.+|||+|||+|..+..+++. +..+++++|+ + +++.+++++...+..++++++.+|+.+... ...+.||+|++.
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~~ 255 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARN---FEGGAADVVMLN 255 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG---GTTCCEEEEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcc---cCCCCccEEEEe
Confidence 789999999999999998765 3468999999 6 999999999888887789999999876531 023569999999
Q ss_pred ccccCCcc--hHHHHHHHHHHhcCCCceEEEEEee-----------------------ccCChHHHHHHHHHhCCcEEEE
Q 046623 132 DVFYDPEE--MVGLGKTLKRVCGTGRHTVVWAVSE-----------------------VRTRTGDCLHELIMSQGFRVIE 186 (218)
Q Consensus 132 ~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~~~~~-----------------------~~~~~~~~~~~~~~~~gf~~~~ 186 (218)
.++|+..+ ...+++.+.++|+|||.+++.-... .+....+.+..++++.||.+.+
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 335 (352)
T 3mcz_A 256 DCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGE 335 (352)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceee
Confidence 99988764 4899999999999999555543211 1122345566667999999988
Q ss_pred E
Q 046623 187 L 187 (218)
Q Consensus 187 ~ 187 (218)
.
T Consensus 336 ~ 336 (352)
T 3mcz_A 336 R 336 (352)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-13 Score=109.20 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=97.3
Q ss_pred ccchhHHHHHHHHhcCC-CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEE-Eee
Q 046623 34 WLWDSALILAQFISTHF-DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVR-ELV 110 (218)
Q Consensus 34 ~~w~~~~~l~~~l~~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~-~~d 110 (218)
++-.++..|...+.... ..++.+|||+|||+|.++..+++.|+.+|+++|+++ +++.+.++- .++... ..+
T Consensus 65 yvsrg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~------~rv~~~~~~n 138 (291)
T 3hp7_A 65 YVSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD------DRVRSMEQYN 138 (291)
T ss_dssp SSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC------TTEEEECSCC
T ss_pred cccchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cccceecccC
Confidence 34467778888877633 357889999999999999999888888999999999 887743321 223222 122
Q ss_pred cCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc---C---------------ChHHH
Q 046623 111 WGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR---T---------------RTGDC 172 (218)
Q Consensus 111 ~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~---~---------------~~~~~ 172 (218)
+....... .+..+||+|+++-.+++ +..++..+.++|+|||.+++++-+... . ...+.
T Consensus 139 i~~l~~~~-l~~~~fD~v~~d~sf~s---l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~ 214 (291)
T 3hp7_A 139 FRYAEPVD-FTEGLPSFASIDVSFIS---LNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLET 214 (291)
T ss_dssp GGGCCGGG-CTTCCCSEEEECCSSSC---GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHH
T ss_pred ceecchhh-CCCCCCCEEEEEeeHhh---HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHH
Confidence 22211111 13345999999766653 588999999999999966665322110 0 12233
Q ss_pred HHHHHHhCCcEEEEEEccCC
Q 046623 173 LHELIMSQGFRVIELTCQLG 192 (218)
Q Consensus 173 ~~~~~~~~gf~~~~~~~~~~ 192 (218)
+..++...||.+..+...+-
T Consensus 215 v~~~~~~~Gf~v~~~~~spi 234 (291)
T 3hp7_A 215 VTAFAVDYGFSVKGLDFSPI 234 (291)
T ss_dssp HHHHHHHTTEEEEEEEECSS
T ss_pred HHHHHHHCCCEEEEEEECCC
Confidence 34444889999988843333
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.50 E-value=9.5e-13 Score=104.89 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=65.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccccc--CCCCcEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSE--LGEFDMV 128 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~D~I 128 (218)
++.+|||+|||+|.+++.++.. +..+++++|+++ +++.+++|++.+++.++++++.+|..+........ .++||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 5679999999999999888654 345999999999 99999999999988777999999865521111111 2589999
Q ss_pred EEcccccCC
Q 046623 129 IMSDVFYDP 137 (218)
Q Consensus 129 v~~~~~~~~ 137 (218)
++++|++..
T Consensus 145 ~~npp~~~~ 153 (254)
T 2h00_A 145 MCNPPFFAN 153 (254)
T ss_dssp EECCCCC--
T ss_pred EECCCCccC
Confidence 999887643
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=111.11 Aligned_cols=122 Identities=14% Similarity=0.162 Sum_probs=93.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHh-CCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEAN-GLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.++.+|||+|||+|.++..+++. +..+++++|+++ +++.++++++.+ +. .++++..+|+.+. . +.++||+
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~-~----~~~~fD~ 182 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADF-I----SDQMYDA 182 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTC-C----CSCCEEE
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhcc-C----cCCCccE
Confidence 56789999999999999999865 345999999999 999999999887 64 3589998888762 2 4568999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
|+++ .++...+++.+.++|+|||.+++. ........+....+ .+.||...++
T Consensus 183 Vi~~-----~~~~~~~l~~~~~~LkpgG~l~i~--~~~~~~~~~~~~~l-~~~Gf~~~~~ 234 (275)
T 1yb2_A 183 VIAD-----IPDPWNHVQKIASMMKPGSVATFY--LPNFDQSEKTVLSL-SASGMHHLET 234 (275)
T ss_dssp EEEC-----CSCGGGSHHHHHHTEEEEEEEEEE--ESSHHHHHHHHHHS-GGGTEEEEEE
T ss_pred EEEc-----CcCHHHHHHHHHHHcCCCCEEEEE--eCCHHHHHHHHHHH-HHCCCeEEEE
Confidence 9983 345678999999999999933333 33222334444454 7889987765
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=107.38 Aligned_cols=125 Identities=19% Similarity=0.166 Sum_probs=95.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..+++.+ .+++++|+++ +++.++++. ..+..+|+.+.... .+.++||+|++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~--~~~~~fD~v~~ 99 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMP--YEEEQFDCVIF 99 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCC--SCTTCEEEEEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCC--CCCCccCEEEE
Confidence 467899999999999999998776 6999999999 988877653 36777777653211 14578999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeec--------------------------cCChHHHHHHHHHhCCcEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV--------------------------RTRTGDCLHELIMSQGFRV 184 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~--------------------------~~~~~~~~~~~~~~~gf~~ 184 (218)
+.++++..+...+++.+.++|+|||.+++...... +....+.+..++.+.||.+
T Consensus 100 ~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 179 (230)
T 3cc8_A 100 GDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSI 179 (230)
T ss_dssp ESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEE
T ss_pred CChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeE
Confidence 99999988999999999999999994444332210 1123455666669999998
Q ss_pred EEE
Q 046623 185 IEL 187 (218)
Q Consensus 185 ~~~ 187 (218)
..+
T Consensus 180 ~~~ 182 (230)
T 3cc8_A 180 SKV 182 (230)
T ss_dssp EEE
T ss_pred EEE
Confidence 877
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.6e-13 Score=99.13 Aligned_cols=135 Identities=16% Similarity=0.085 Sum_probs=90.4
Q ss_pred hHHHHHHHHhcCC-CCCCCeEEEECCCCCHHHHHHHHh-CC-CeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 38 SALILAQFISTHF-DFQNKSVLELGAGAGLPGLTAARL-GA-TRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 38 ~~~~l~~~l~~~~-~~~~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
....+.+++.... ..++.+|||+|||+|.++..+++. +. .+++++|++++.+. .++.+..+|+.+.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~-----------~~~~~~~~d~~~~ 74 (180)
T 1ej0_A 6 AWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPI-----------VGVDFLQGDFRDE 74 (180)
T ss_dssp HHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCC-----------TTEEEEESCTTSH
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccccc-----------CcEEEEEcccccc
Confidence 3344555554422 356779999999999999999766 43 69999999982111 3488888887764
Q ss_pred C----ccccccCCCCcEEEEcccccCCcch-----------HHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHh
Q 046623 115 D----LSQLSELGEFDMVIMSDVFYDPEEM-----------VGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMS 179 (218)
Q Consensus 115 ~----~~~~~~~~~~D~Iv~~~~~~~~~~~-----------~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~ 179 (218)
. .....+.++||+|+++.+++..... ..+++.+.++|+|||.+++ .........+....+ ..
T Consensus 75 ~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~--~~~~~~~~~~~~~~~-~~ 151 (180)
T 1ej0_A 75 LVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVV--KVFQGEGFDEYLREI-RS 151 (180)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE--EEESSTTHHHHHHHH-HH
T ss_pred hhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEE--EEecCCcHHHHHHHH-HH
Confidence 3 0000145789999998888765544 7899999999999994433 333334455555555 54
Q ss_pred CCcEEEEE
Q 046623 180 QGFRVIEL 187 (218)
Q Consensus 180 ~gf~~~~~ 187 (218)
.|....+
T Consensus 152 -~~~~~~~ 158 (180)
T 1ej0_A 152 -LFTKVKV 158 (180)
T ss_dssp -HEEEEEE
T ss_pred -hhhhEEe
Confidence 3666555
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.6e-13 Score=108.80 Aligned_cols=101 Identities=15% Similarity=0.074 Sum_probs=75.4
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-ccccCCCCc
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QLSELGEFD 126 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~D 126 (218)
....++.+|||+|||+|.+++.+++.+. +|+++|+|+ +++.++++...+ ++..++.+.... .....++||
T Consensus 41 l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~-------~v~~~~~~~~~~~~~~~~~~fD 112 (261)
T 3iv6_A 41 ENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR-------CVTIDLLDITAEIPKELAGHFD 112 (261)
T ss_dssp TTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS-------CCEEEECCTTSCCCGGGTTCCS
T ss_pred cCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc-------cceeeeeecccccccccCCCcc
Confidence 3345778999999999999999998876 999999999 999999887544 122333332210 001357899
Q ss_pred EEEEcccccCC--cchHHHHHHHHHHhcCCCceE
Q 046623 127 MVIMSDVFYDP--EEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 127 ~Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~ 158 (218)
+|+++.++++. ++...++..+.++| |||.++
T Consensus 113 ~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~ 145 (261)
T 3iv6_A 113 FVLNDRLINRFTTEEARRACLGMLSLV-GSGTVR 145 (261)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEE
T ss_pred EEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEE
Confidence 99999888764 45677999999999 999333
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.6e-13 Score=110.08 Aligned_cols=129 Identities=20% Similarity=0.207 Sum_probs=99.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|..+..+++.. ..+++++|+ + +++.+++++...++.++++++.+|+.+.. + ..||+|+
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-~~~D~v~ 254 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL-----P-RKADAII 254 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC-----S-SCEEEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCC-----C-CCccEEE
Confidence 456799999999999999987664 358999999 8 99999999998888778999999986532 2 3499999
Q ss_pred EcccccCCcch--HHHHHHHHHHhcCCCceEEEEEe--ec--------------------cCChHHHHHHHHHhCCcEEE
Q 046623 130 MSDVFYDPEEM--VGLGKTLKRVCGTGRHTVVWAVS--EV--------------------RTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 130 ~~~~~~~~~~~--~~~l~~~~~lL~~gG~~~i~~~~--~~--------------------~~~~~~~~~~~~~~~gf~~~ 185 (218)
+..++++..+. ..+++.+.++|+|||.+++.-.. .. +....+.+..++.+.||.+.
T Consensus 255 ~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 334 (360)
T 1tw3_A 255 LSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVE 334 (360)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEE
T ss_pred EcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEE
Confidence 99999876654 58999999999999955544322 10 11234455666689999988
Q ss_pred EE
Q 046623 186 EL 187 (218)
Q Consensus 186 ~~ 187 (218)
++
T Consensus 335 ~~ 336 (360)
T 1tw3_A 335 EV 336 (360)
T ss_dssp EE
T ss_pred EE
Confidence 87
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-12 Score=109.20 Aligned_cols=129 Identities=22% Similarity=0.164 Sum_probs=99.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|..+..+++.. ..+++++|+ + +++.+++++...++.++++++.+|+.+.. + ..||+|+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-~~~D~v~ 253 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL-----P-VTADVVL 253 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-----S-CCEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcC-----C-CCCCEEE
Confidence 456799999999999999997664 358999999 8 99999999998888778999999986522 2 2499999
Q ss_pred EcccccCCcch--HHHHHHHHHHhcCCCceEEEEE--e-ec--------------------cCChHHHHHHHHHhCCcEE
Q 046623 130 MSDVFYDPEEM--VGLGKTLKRVCGTGRHTVVWAV--S-EV--------------------RTRTGDCLHELIMSQGFRV 184 (218)
Q Consensus 130 ~~~~~~~~~~~--~~~l~~~~~lL~~gG~~~i~~~--~-~~--------------------~~~~~~~~~~~~~~~gf~~ 184 (218)
++.++++..+. ..+++.+.++|+|||.+++.-. . .. +....+.+..++.+.||.+
T Consensus 254 ~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 333 (374)
T 1qzz_A 254 LSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLAL 333 (374)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEE
T ss_pred EeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCce
Confidence 99999887655 4899999999999995544322 1 10 1123445566668999998
Q ss_pred EEE
Q 046623 185 IEL 187 (218)
Q Consensus 185 ~~~ 187 (218)
.++
T Consensus 334 ~~~ 336 (374)
T 1qzz_A 334 ASE 336 (374)
T ss_dssp EEE
T ss_pred EEE
Confidence 887
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-15 Score=117.31 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=84.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
++.+|||+|||+|..+..+++.+ .+|+++|+++ +++.++++++.+++..+++++.+|+.+.. +.++||+|+++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~~ 151 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-----SFLKADVVFLS 151 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-----GGCCCSEEEEC
T ss_pred CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-----ccCCCCEEEEC
Confidence 67899999999999999999887 5999999999 99999999999987657999998876543 45789999999
Q ss_pred ccccCCcchHHHHHHHHHHhcCCCc
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~gG~ 156 (218)
+++++.......+..+.++|+|||.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~L~pgG~ 176 (241)
T 3gdh_A 152 PPWGGPDYATAETFDIRTMMSPDGF 176 (241)
T ss_dssp CCCSSGGGGGSSSBCTTTSCSSCHH
T ss_pred CCcCCcchhhhHHHHHHhhcCCcce
Confidence 9998876666667778889999983
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-12 Score=103.90 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=91.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..+++. ..+++++|+++ +++.++++.+..++..++++...|+.+... ..++||+|++
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~v~~ 164 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV----PEGIFHAAFV 164 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC----CTTCBSEEEE
T ss_pred CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc----CCCcccEEEE
Confidence 46789999999999999999877 55999999999 999999999988876678999888766431 3467999998
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+. .+...+++.+.++|+|||.+++.. .......+....+ .+. |.....
T Consensus 165 ~~-----~~~~~~l~~~~~~L~~gG~l~~~~--~~~~~~~~~~~~l-~~~-f~~~~~ 212 (248)
T 2yvl_A 165 DV-----REPWHYLEKVHKSLMEGAPVGFLL--PTANQVIKLLESI-ENY-FGNLEV 212 (248)
T ss_dssp CS-----SCGGGGHHHHHHHBCTTCEEEEEE--SSHHHHHHHHHHS-TTT-EEEEEE
T ss_pred CC-----cCHHHHHHHHHHHcCCCCEEEEEe--CCHHHHHHHHHHH-Hhh-CCcceE
Confidence 43 356788999999999999443333 3223344444444 555 664443
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.6e-13 Score=109.59 Aligned_cols=126 Identities=21% Similarity=0.204 Sum_probs=98.0
Q ss_pred CeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 55 KSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
.+|||+|||+|..+..+++. +..+++++|+ + +++.+++++...++.++++++.+|+.+. . + ++||+|++..
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~----~-~~~D~v~~~~ 241 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE-V----P-SNGDIYLLSR 241 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC-C----C-SSCSEEEEES
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC-C----C-CCCCEEEEch
Confidence 89999999999999998765 3458999999 8 9999999988776667799999998762 2 3 5799999999
Q ss_pred cccCCcchH--HHHHHHHHHhcCCCceEEEEEee---------------------ccCChHHHHHHHHHhCCcEEEEE
Q 046623 133 VFYDPEEMV--GLGKTLKRVCGTGRHTVVWAVSE---------------------VRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 133 ~~~~~~~~~--~~l~~~~~lL~~gG~~~i~~~~~---------------------~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
++++..+.. .+++.+.++|+|||.+++.-... .+....+.+..++++.||...++
T Consensus 242 vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 319 (334)
T 2ip2_A 242 IIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERI 319 (334)
T ss_dssp CGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred hccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEE
Confidence 998765544 99999999999999554442111 01123455566668999998877
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=109.28 Aligned_cols=145 Identities=12% Similarity=0.053 Sum_probs=99.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccc--cCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLS--ELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~D 126 (218)
.++.+|||+|||+|..++.+++. + ..+|+++|+++ +++.++++++..++.++++++.+|..+....... ..++||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 35679999999999999999864 2 35999999999 9999999999999887899999886543211000 047899
Q ss_pred EEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccC--------------ChHHHHHHHHHhCCcEEEEEEccCC
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRT--------------RTGDCLHELIMSQGFRVIELTCQLG 192 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~--------------~~~~~~~~~~~~~gf~~~~~~~~~~ 192 (218)
+|++... ......+++.+.++|+||| ++++...... ...++.+.+.....|....+|+.
T Consensus 139 ~V~~d~~---~~~~~~~l~~~~~~LkpGG--~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~-- 211 (242)
T 3r3h_A 139 FIFIDAD---KTNYLNYYELALKLVTPKG--LIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAIA-- 211 (242)
T ss_dssp EEEEESC---GGGHHHHHHHHHHHEEEEE--EEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESSS--
T ss_pred EEEEcCC---hHHhHHHHHHHHHhcCCCe--EEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEcc--
Confidence 9998654 3557789999999999999 3333322211 13445555533445666555552
Q ss_pred CCCCCceeEEEecCC
Q 046623 193 GGCPEAFAVYELIPP 207 (218)
Q Consensus 193 ~~~~~~~~l~~~~~~ 207 (218)
.++.+.+.+++
T Consensus 212 ----dG~~~~~k~~~ 222 (242)
T 3r3h_A 212 ----DGMFLVQPIAE 222 (242)
T ss_dssp ----SCEEEEEEC--
T ss_pred ----CceEEEEEcCC
Confidence 34555555444
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-13 Score=111.31 Aligned_cols=105 Identities=13% Similarity=0.108 Sum_probs=77.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCC-----ceEEEEeecCCCCcc----ccccC
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGG-----RVEVRELVWGSDDLS----QLSEL 122 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~-----~~~~~~~d~~~~~~~----~~~~~ 122 (218)
++.+|||+|||+|.....+++.+..+|+|+|+|+ +++.|++.....+... .+++...|+...... ...+.
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 4789999999999866666555556999999999 9999999887665321 256777776443311 01245
Q ss_pred CCCcEEEEcccccCC---cchHHHHHHHHHHhcCCCce
Q 046623 123 GEFDMVIMSDVFYDP---EEMVGLGKTLKRVCGTGRHT 157 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~---~~~~~~l~~~~~lL~~gG~~ 157 (218)
++||+|++..++++. .....+++.+.++|||||.+
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~ 165 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKV 165 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEE
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEE
Confidence 789999998887642 45689999999999999944
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-13 Score=114.46 Aligned_cols=102 Identities=23% Similarity=0.266 Sum_probs=85.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
.++.+|||+|||+|.++..+++.+..+|+++|++++++.++++++.+++.++++++.+|+.+... .++||+|++.
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~-----~~~~D~Ivs~ 123 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSL-----PEQVDIIISE 123 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCC-----SSCEEEEEEC
T ss_pred CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCC-----CCceeEEEEe
Confidence 57889999999999999999988877999999999668899999999887789999999876542 3679999998
Q ss_pred ccccCC--cchHHHHHHHHHHhcCCCceE
Q 046623 132 DVFYDP--EEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 132 ~~~~~~--~~~~~~l~~~~~lL~~gG~~~ 158 (218)
.+.++. +.....+..+.++|+|||.++
T Consensus 124 ~~~~~~~~~~~~~~l~~~~~~LkpgG~li 152 (348)
T 2y1w_A 124 PMGYMLFNERMLESYLHAKKYLKPSGNMF 152 (348)
T ss_dssp CCBTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred CchhcCChHHHHHHHHHHHhhcCCCeEEE
Confidence 776653 456677788899999999443
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.48 E-value=4.9e-14 Score=119.66 Aligned_cols=135 Identities=17% Similarity=0.096 Sum_probs=96.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
++.+|||+|||+|.+++.+++.|+.+|+++|+++ +++.+++|++.+++.++++++.+|+.+..........+||+|+++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d 296 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 296 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence 6789999999999999999988777999999999 999999999999886568999988755322111124689999998
Q ss_pred ccccCC---------cchHHHHHHHHHHhcCCCceEEEEEeeccC--ChHHHHHHHHHhCCcEEEEE
Q 046623 132 DVFYDP---------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRT--RTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 132 ~~~~~~---------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~--~~~~~~~~~~~~~gf~~~~~ 187 (218)
+|.+.. .....++..+.++|+|||.+++..+..... ...+.+...+.+.+..+..+
T Consensus 297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i 363 (396)
T 2as0_A 297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKML 363 (396)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEES
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 876543 346778899999999999433333322111 12233333335566555443
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.6e-13 Score=113.04 Aligned_cols=131 Identities=18% Similarity=0.181 Sum_probs=99.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
...+|||+|||+|..+..+++. +..+++++|+ + +++.+++++...+..++++++.+|+.+... . ..++||+|++
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~--~p~~~D~v~~ 254 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDV-P--FPTGFDAVWM 254 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSC-C--CCCCCSEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCC-C--CCCCcCEEEE
Confidence 5679999999999999998764 4458999999 7 999999999887776789999999876530 0 1268999999
Q ss_pred cccccCCcc--hHHHHHHHHHHhcCCCceEEEEEeec--------------------------cCChHHHHHHHHHhCCc
Q 046623 131 SDVFYDPEE--MVGLGKTLKRVCGTGRHTVVWAVSEV--------------------------RTRTGDCLHELIMSQGF 182 (218)
Q Consensus 131 ~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~~~~~~--------------------------~~~~~~~~~~~~~~~gf 182 (218)
..++|+..+ ...+++++.+.|+|||.+++.-.... +....+.+..++++.||
T Consensus 255 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf 334 (363)
T 3dp7_A 255 SQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGL 334 (363)
T ss_dssp ESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTE
T ss_pred echhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCC
Confidence 999987654 46889999999999995555321110 11234556666688999
Q ss_pred EEEEE
Q 046623 183 RVIEL 187 (218)
Q Consensus 183 ~~~~~ 187 (218)
...++
T Consensus 335 ~~v~~ 339 (363)
T 3dp7_A 335 EVEEI 339 (363)
T ss_dssp EESCC
T ss_pred eEEEE
Confidence 88776
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=106.52 Aligned_cols=118 Identities=17% Similarity=0.122 Sum_probs=91.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
++.+|||+|||+|.++..+++. +++|+++ +++.++++ ++.+..+|+..... +.++||+|++.
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~----~~~~fD~v~~~ 109 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKGTAENLPL----KDESFDFALMV 109 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCS----CTTCEEEEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEcccccCCC----CCCCeeEEEEc
Confidence 3789999999999998887543 9999999 99888876 27788888765443 45789999999
Q ss_pred ccccCCcchHHHHHHHHHHhcCCCceEEEEEeec--------------------cCChHHHHHHHHHhCCcEEEEE
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV--------------------RTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~--------------------~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
.++++..+...+++.+.++|+|||.+++...... +....+.+..++.+.||.+..+
T Consensus 110 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 185 (219)
T 1vlm_A 110 TTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV 185 (219)
T ss_dssp SCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred chHhhccCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEE
Confidence 9999988999999999999999994444432211 1123455666669999999886
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.6e-12 Score=109.42 Aligned_cols=158 Identities=17% Similarity=0.106 Sum_probs=111.0
Q ss_pred HHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc
Q 046623 39 ALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL 116 (218)
Q Consensus 39 ~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 116 (218)
+..+.+.+.. ....++.+|||+|||+|.+++.+++.+ .+|+++|+++ +++.|++|++.+++. ++.++.+|+.+...
T Consensus 271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~ 348 (433)
T 1uwv_A 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVT 348 (433)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCS
T ss_pred HHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhh
Confidence 4444444443 223466799999999999999998874 5999999999 999999999999886 69999999876432
Q ss_pred cccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE-EccCCCCC
Q 046623 117 SQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL-TCQLGGGC 195 (218)
Q Consensus 117 ~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~-~~~~~~~~ 195 (218)
......++||+|++++|.... .++++.+.+ ++|++ +++++... .........+ .+.||.+..+ ++...+..
T Consensus 349 ~~~~~~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~--ivyvsc~p-~tlard~~~l-~~~Gy~~~~~~~~d~Fp~t 420 (433)
T 1uwv_A 349 KQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIR--IVYVSCNP-ATLARDSEAL-LKAGYTIARLAMLDMFPHT 420 (433)
T ss_dssp SSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSE--EEEEESCH-HHHHHHHHHH-HHTTCEEEEEEEECCSTTS
T ss_pred hhhhhcCCCCEEEECCCCccH---HHHHHHHHh-cCCCe--EEEEECCh-HHHHhhHHHH-HHCCcEEEEEEEeccCCCC
Confidence 111134689999998775432 356666653 67876 55554332 2233445555 6789999986 77777777
Q ss_pred CCceeEEEecC
Q 046623 196 PEAFAVYELIP 206 (218)
Q Consensus 196 ~~~~~l~~~~~ 206 (218)
.....+..|.+
T Consensus 421 ~HvE~v~ll~r 431 (433)
T 1uwv_A 421 GHLESMVLFSR 431 (433)
T ss_dssp SCCEEEEEEEC
T ss_pred CeEEEEEEEEE
Confidence 76666665543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=110.17 Aligned_cols=108 Identities=18% Similarity=0.138 Sum_probs=79.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh---CCCeEEEecCcc-hHHHHHHHHHHh---CCCCc---------------------
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL---GATRVVLTDVKP-LLPGLINNVEAN---GLGGR--------------------- 103 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~---~~~~v~~~D~~~-~~~~a~~~~~~~---~~~~~--------------------- 103 (218)
.++.+|||+|||+|.+++.+++. +..+|+++|+++ +++.+++++..+ ++.++
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 35679999999999999998765 335899999999 999999988765 43222
Q ss_pred ----eE-------------EEEeecCCCCccc-cccCCCCcEEEEcccccCCcc---------hHHHHHHHHHHhcCCCc
Q 046623 104 ----VE-------------VRELVWGSDDLSQ-LSELGEFDMVIMSDVFYDPEE---------MVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 104 ----~~-------------~~~~d~~~~~~~~-~~~~~~~D~Iv~~~~~~~~~~---------~~~~l~~~~~lL~~gG~ 156 (218)
++ +..+|+.+..... .....+||+|++++++..... ...+++.+.++|+|||.
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 209 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 209 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence 55 8888876532100 002248999999988765432 45899999999999994
Q ss_pred eEE
Q 046623 157 TVV 159 (218)
Q Consensus 157 ~~i 159 (218)
+++
T Consensus 210 l~~ 212 (250)
T 1o9g_A 210 IAV 212 (250)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-12 Score=103.02 Aligned_cols=148 Identities=13% Similarity=0.057 Sum_probs=93.8
Q ss_pred cccchhHH-HHHHHHhc----CCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCce
Q 046623 33 AWLWDSAL-ILAQFIST----HFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRV 104 (218)
Q Consensus 33 ~~~w~~~~-~l~~~l~~----~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~ 104 (218)
+..|+.-+ .++..+.+ ....++.+|||+|||+|..+..++.. + ..+|+++|+++ +++.+.+..+.. .++
T Consensus 51 yr~w~~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv 127 (232)
T 3id6_C 51 YREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNI 127 (232)
T ss_dssp EEECCTTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTE
T ss_pred hhhhchHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCe
Confidence 44554332 34444444 22357889999999999999998754 3 45999999999 876655544433 358
Q ss_pred EEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEee-------ccCChHHHHHHHH
Q 046623 105 EVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE-------VRTRTGDCLHELI 177 (218)
Q Consensus 105 ~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~-------~~~~~~~~~~~~~ 177 (218)
.++.+|........ ...++||+|+++.+. ......+...+.+.|||||.+++.+... ......+....+
T Consensus 128 ~~i~~Da~~~~~~~-~~~~~~D~I~~d~a~--~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L- 203 (232)
T 3id6_C 128 FPLLADARFPQSYK-SVVENVDVLYVDIAQ--PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKL- 203 (232)
T ss_dssp EEEECCTTCGGGTT-TTCCCEEEEEECCCC--TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHH-
T ss_pred EEEEcccccchhhh-ccccceEEEEecCCC--hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHH-
Confidence 88988876532111 124689999996543 2233334456666999999655553111 112234455555
Q ss_pred HhCCcEEEEE
Q 046623 178 MSQGFRVIEL 187 (218)
Q Consensus 178 ~~~gf~~~~~ 187 (218)
.+.||.+.+.
T Consensus 204 ~~~gf~~~~~ 213 (232)
T 3id6_C 204 ENSNFETIQI 213 (232)
T ss_dssp HHTTEEEEEE
T ss_pred HHCCCEEEEE
Confidence 7889998886
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-13 Score=107.44 Aligned_cols=144 Identities=19% Similarity=0.170 Sum_probs=90.2
Q ss_pred hhHHHHHHHHhcCC-CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEE-eecCC
Q 046623 37 DSALILAQFISTHF-DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRE-LVWGS 113 (218)
Q Consensus 37 ~~~~~l~~~l~~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~-~d~~~ 113 (218)
.+...+...+.... ..++.+|||+|||+|.++..+++.++.+|+++|+++ +++.++++... +.... .++..
T Consensus 20 rg~~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~------~~~~~~~~~~~ 93 (232)
T 3opn_A 20 RGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDER------VVVMEQFNFRN 93 (232)
T ss_dssp TTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTT------EEEECSCCGGG
T ss_pred CcHHHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcc------ccccccceEEE
Confidence 55667777776633 356779999999999999999888767999999999 98886665321 21111 11111
Q ss_pred CCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccC------------------ChHHHHHH
Q 046623 114 DDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRT------------------RTGDCLHE 175 (218)
Q Consensus 114 ~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~------------------~~~~~~~~ 175 (218)
..... .....+|.+.+..++.+ ...++..+.++|+|||.+++++.+.... ...+.+..
T Consensus 94 ~~~~~-~~~~~~d~~~~D~v~~~---l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~ 169 (232)
T 3opn_A 94 AVLAD-FEQGRPSFTSIDVSFIS---LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLK 169 (232)
T ss_dssp CCGGG-CCSCCCSEEEECCSSSC---GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHH
T ss_pred eCHhH-cCcCCCCEEEEEEEhhh---HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHH
Confidence 10000 01123566666544433 3789999999999999655543111000 12233444
Q ss_pred HHHhCCcEEEEEEcc
Q 046623 176 LIMSQGFRVIELTCQ 190 (218)
Q Consensus 176 ~~~~~gf~~~~~~~~ 190 (218)
++.+.||.+..+...
T Consensus 170 ~l~~aGf~v~~~~~~ 184 (232)
T 3opn_A 170 TATQLGFSVKGLTFS 184 (232)
T ss_dssp HHHHHTEEEEEEEEC
T ss_pred HHHHCCCEEEEEEEc
Confidence 558899999888433
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.8e-13 Score=113.67 Aligned_cols=133 Identities=19% Similarity=0.052 Sum_probs=94.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
++.+|||+|||+|.+++.+++. +.+|+++|+++ +++.+++|++.+++.+ +.++.+|+.+..........+||+|+++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 6779999999999999999877 56999999999 9999999999999876 8999888755422111125689999998
Q ss_pred ccccCC---------cchHHHHHHHHHHhcCCCceEEEEEeeccC--ChHHHHHHHHHhCCcEEEEE
Q 046623 132 DVFYDP---------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRT--RTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 132 ~~~~~~---------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~--~~~~~~~~~~~~~gf~~~~~ 187 (218)
+|.+.. .....++..+.++|+|||.+++..+..... ...+.+...+.+.|..+..+
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i 353 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV 353 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 876542 345778899999999999433333322111 12233333335666444433
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.5e-13 Score=104.69 Aligned_cols=99 Identities=12% Similarity=0.112 Sum_probs=81.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|..++.+++.. ..+|+++|+++ +++.++++++..++.++++++.+|..+..... ..++||+|+
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~~fD~V~ 147 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENV--NDKVYDMIF 147 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHH--TTSCEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhh--ccCCccEEE
Confidence 356799999999999999998742 46999999999 99999999999988778999998876542100 257899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCC
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
++.. ......+++.+.++|+|||
T Consensus 148 ~~~~---~~~~~~~l~~~~~~LkpgG 170 (232)
T 3ntv_A 148 IDAA---KAQSKKFFEIYTPLLKHQG 170 (232)
T ss_dssp EETT---SSSHHHHHHHHGGGEEEEE
T ss_pred EcCc---HHHHHHHHHHHHHhcCCCe
Confidence 8644 4567889999999999999
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.47 E-value=7e-13 Score=104.21 Aligned_cols=106 Identities=12% Similarity=0.040 Sum_probs=81.9
Q ss_pred HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc
Q 046623 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL 119 (218)
Q Consensus 41 ~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (218)
.+.+++.... .++.+|||+|||+|..+..+++.+. +++++|+++ +++.++++. .++.+..+|+.+..
T Consensus 29 ~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~---- 96 (239)
T 3bxo_A 29 DIADLVRSRT-PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL------PDATLHQGDMRDFR---- 96 (239)
T ss_dssp HHHHHHHHHC-TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCC----
T ss_pred HHHHHHHHhc-CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHcc----
Confidence 3444444322 4677999999999999999987766 999999999 999988764 34788888876643
Q ss_pred ccCCCCcEEEE-cccccCC---cchHHHHHHHHHHhcCCCceEE
Q 046623 120 SELGEFDMVIM-SDVFYDP---EEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 120 ~~~~~~D~Iv~-~~~~~~~---~~~~~~l~~~~~lL~~gG~~~i 159 (218)
..++||+|++ ..++++. ++...+++.+.++|+|||.+++
T Consensus 97 -~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 139 (239)
T 3bxo_A 97 -LGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVV 139 (239)
T ss_dssp -CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred -cCCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 3468999995 5577765 5678899999999999994443
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-13 Score=106.85 Aligned_cols=98 Identities=14% Similarity=0.058 Sum_probs=79.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCC-CceEEEEeecCCCCccccccCCCCcEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLG-GRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
++.+|||+|||+|..++.+++. + ..+|+++|+++ +++.++++++..++. ++++++.+|..+.... ...++||+|
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~--~~~~~fD~V 133 (221)
T 3dr5_A 56 GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSR--LANDSYQLV 133 (221)
T ss_dssp TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGG--SCTTCEEEE
T ss_pred CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHH--hcCCCcCeE
Confidence 3459999999999999999864 2 35999999999 999999999999987 6899998876543221 025789999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
++... ......+++.+.++|+|||
T Consensus 134 ~~d~~---~~~~~~~l~~~~~~LkpGG 157 (221)
T 3dr5_A 134 FGQVS---PMDLKALVDAAWPLLRRGG 157 (221)
T ss_dssp EECCC---TTTHHHHHHHHHHHEEEEE
T ss_pred EEcCc---HHHHHHHHHHHHHHcCCCc
Confidence 98644 3556789999999999999
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-13 Score=116.12 Aligned_cols=143 Identities=15% Similarity=0.094 Sum_probs=103.4
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
+++.+...+.- .++.+|||+|||+|..++.++.. + ..+|+++|+++ +++.+++|++..++.+ +.+...|....
T Consensus 93 ss~l~~~~L~~---~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~n-v~v~~~Da~~l 168 (456)
T 3m4x_A 93 SAMIVGTAAAA---KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSN-AIVTNHAPAEL 168 (456)
T ss_dssp TTHHHHHHHCC---CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSS-EEEECCCHHHH
T ss_pred HHHHHHHHcCC---CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCHHHh
Confidence 44455555432 46789999999999999998754 3 35899999999 9999999999999864 78877665432
Q ss_pred CccccccCCCCcEEEEcccccCCc----------------------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHH
Q 046623 115 DLSQLSELGEFDMVIMSDVFYDPE----------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDC 172 (218)
Q Consensus 115 ~~~~~~~~~~~D~Iv~~~~~~~~~----------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~ 172 (218)
.. ...++||.|++++|+.... ....+++.+.++|+|||.+++.+++.....-++.
T Consensus 169 ~~---~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~v 245 (456)
T 3m4x_A 169 VP---HFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEI 245 (456)
T ss_dssp HH---HHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHH
T ss_pred hh---hccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHH
Confidence 21 1347899999988753211 1237889999999999955544555545556677
Q ss_pred HHHHHHhCCcEEEEE
Q 046623 173 LHELIMSQGFRVIEL 187 (218)
Q Consensus 173 ~~~~~~~~gf~~~~~ 187 (218)
+..++.+++|.+..+
T Consensus 246 v~~~l~~~~~~l~~~ 260 (456)
T 3m4x_A 246 ISWLVENYPVTIEEI 260 (456)
T ss_dssp HHHHHHHSSEEEECC
T ss_pred HHHHHHhCCCEEEec
Confidence 777778888666554
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-13 Score=109.92 Aligned_cols=135 Identities=17% Similarity=0.212 Sum_probs=89.3
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHh-CCCeE--EEecCcc-hHHHHHHHHHHh-CCCCceEEE--EeecCCCCcc--c
Q 046623 52 FQNKSVLELGAGAGLPGLTA----ARL-GATRV--VLTDVKP-LLPGLINNVEAN-GLGGRVEVR--ELVWGSDDLS--Q 118 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l----~~~-~~~~v--~~~D~~~-~~~~a~~~~~~~-~~~~~~~~~--~~d~~~~~~~--~ 118 (218)
.++.+|||+|||+|.++..+ +.. +..++ +++|+|+ +++.+++++... ++. ++.+. ..+..+.... .
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLE-NVKFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCT-TEEEEEECSCHHHHHHHHHT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCC-cceEEEEecchhhhhhhhcc
Confidence 35679999999999766533 222 23344 9999999 999999887653 332 34443 2222111000 0
Q ss_pred cccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeec--------------------cCChHHHHHHHHH
Q 046623 119 LSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV--------------------RTRTGDCLHELIM 178 (218)
Q Consensus 119 ~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~--------------------~~~~~~~~~~~~~ 178 (218)
..+.++||+|+++.++++.+++.+.++++.++|||||.+++...... +....+.+..++.
T Consensus 130 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 209 (292)
T 2aot_A 130 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLD 209 (292)
T ss_dssp TTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHH
T ss_pred ccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHH
Confidence 01357899999999999999999999999999999995555433210 0112334555568
Q ss_pred hCCcEEEEE
Q 046623 179 SQGFRVIEL 187 (218)
Q Consensus 179 ~~gf~~~~~ 187 (218)
+.||.+...
T Consensus 210 ~aGf~~~~~ 218 (292)
T 2aot_A 210 NLGLKYECY 218 (292)
T ss_dssp HHTCCEEEE
T ss_pred HCCCceEEE
Confidence 899987764
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-12 Score=101.06 Aligned_cols=128 Identities=11% Similarity=0.090 Sum_probs=85.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|..+..+++.. ..+|+++|+++ +++.+.+..+.. .++.++.+|....... ....++||+|+
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~-~~~~~~fD~V~ 131 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKY-SGIVEKVDLIY 131 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGT-TTTCCCEEEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhh-cccccceeEEE
Confidence 467899999999999999887653 35899999999 887766665543 3477777776553110 01237899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEee---ccCChHHHH----HHHHHhCCcEEEEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE---VRTRTGDCL----HELIMSQGFRVIEL 187 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~---~~~~~~~~~----~~~~~~~gf~~~~~ 187 (218)
++-. .......+++++.++|||||.+++..... .+...++.+ +.+ ++. |.+.+.
T Consensus 132 ~~~~--~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l-~~~-f~~~~~ 192 (210)
T 1nt2_A 132 QDIA--QKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEM-EGD-FKIVKH 192 (210)
T ss_dssp ECCC--STTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHH-HTT-SEEEEE
T ss_pred Eecc--ChhHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHH-Hhh-cEEeee
Confidence 9632 22344556899999999999555543211 122234433 233 777 988776
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-13 Score=105.09 Aligned_cols=100 Identities=14% Similarity=0.133 Sum_probs=80.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccccc---CCCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSE---LGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~ 125 (218)
.++.+|||+|||+|..++.+++. + ..+|+++|+++ +++.++++++..++.++++++.+|..+.... ... .++|
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~~~~f 141 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAE-LIHAGQAWQY 141 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHH-HHTTTCTTCE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHH-hhhccCCCCc
Confidence 35679999999999999999865 2 46999999999 9999999999999887899999887543211 101 1789
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
|+|+++.+ ......+++.+.++|+|||
T Consensus 142 D~v~~~~~---~~~~~~~l~~~~~~L~pgG 168 (225)
T 3tr6_A 142 DLIYIDAD---KANTDLYYEESLKLLREGG 168 (225)
T ss_dssp EEEEECSC---GGGHHHHHHHHHHHEEEEE
T ss_pred cEEEECCC---HHHHHHHHHHHHHhcCCCc
Confidence 99998654 3557889999999999999
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-13 Score=115.79 Aligned_cols=142 Identities=19% Similarity=0.179 Sum_probs=102.4
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
+++.+..++.- .++.+|||+|||+|..+..++.. + ..+|+++|+++ +++.+++|++..++. +.+...|....
T Consensus 89 ss~l~a~~L~~---~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l 163 (464)
T 3m6w_A 89 SAQAVGVLLDP---KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRAL 163 (464)
T ss_dssp TTHHHHHHHCC---CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHH
T ss_pred HHHHHHHhcCc---CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHh
Confidence 44455555432 46789999999999999999754 2 35899999999 999999999999976 78887765433
Q ss_pred CccccccCCCCcEEEEcccccCC------cc----------------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHH
Q 046623 115 DLSQLSELGEFDMVIMSDVFYDP------EE----------------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDC 172 (218)
Q Consensus 115 ~~~~~~~~~~~D~Iv~~~~~~~~------~~----------------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~ 172 (218)
.. ...++||+|++++|+... ++ ...+++.+.++|+|||.+++.+++.....-++.
T Consensus 164 ~~---~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~v 240 (464)
T 3m6w_A 164 AE---AFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGV 240 (464)
T ss_dssp HH---HHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHH
T ss_pred hh---hccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHH
Confidence 21 135789999998776321 11 277899999999999955544555545556667
Q ss_pred HHHHHHhC-CcEEEEE
Q 046623 173 LHELIMSQ-GFRVIEL 187 (218)
Q Consensus 173 ~~~~~~~~-gf~~~~~ 187 (218)
+.+++.++ +|.+..+
T Consensus 241 v~~~l~~~~~~~l~~~ 256 (464)
T 3m6w_A 241 VAHFLKAHPEFRLEDA 256 (464)
T ss_dssp HHHHHHHCTTEEEECC
T ss_pred HHHHHHHCCCcEEEec
Confidence 77776666 5766554
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=116.37 Aligned_cols=104 Identities=20% Similarity=0.096 Sum_probs=80.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
++.+|||+|||+|.+++.+++.|+ +|+++|+|+ +++.+++|++.+++.. .+..+|+.+.... ..+.||+|+++
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~---~~~~fD~Ii~d 287 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRG---LEGPFHHVLLD 287 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHT---CCCCEEEEEEC
T ss_pred CCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHH---hcCCCCEEEEC
Confidence 488999999999999999998877 599999999 9999999999999863 4556665433210 13449999998
Q ss_pred ccccCC---------cchHHHHHHHHHHhcCCCceEEEEE
Q 046623 132 DVFYDP---------EEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 132 ~~~~~~---------~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
+|.+.. .....++..+.++|+|||.+++..+
T Consensus 288 pP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~ 327 (393)
T 4dmg_A 288 PPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC 327 (393)
T ss_dssp CCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 886442 2456888999999999994433333
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-12 Score=112.04 Aligned_cols=141 Identities=13% Similarity=0.127 Sum_probs=98.5
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD 115 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 115 (218)
+++.+...+.. .++.+|||+|||+|..+..++.... .+++++|+++ +++.+++|++.+++. +.+..+|.....
T Consensus 234 ~s~~~~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~~~~~ 308 (429)
T 1sqg_A 234 SAQGCMTWLAP---QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPS 308 (429)
T ss_dssp HHHTHHHHHCC---CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCTH
T ss_pred HHHHHHHHcCC---CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCchhhch
Confidence 44444444432 4678999999999999999987643 6999999999 999999999998864 788888876543
Q ss_pred ccccccCCCCcEEEEcccccCC------cc----------------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHH
Q 046623 116 LSQLSELGEFDMVIMSDVFYDP------EE----------------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCL 173 (218)
Q Consensus 116 ~~~~~~~~~~D~Iv~~~~~~~~------~~----------------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~ 173 (218)
. ..+.++||+|++++|+... ++ ...+++.+.++|+|||.+++..++......++.+
T Consensus 309 ~--~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v 386 (429)
T 1sqg_A 309 Q--WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQI 386 (429)
T ss_dssp H--HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHH
T ss_pred h--hcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHH
Confidence 1 1134689999998776431 11 1478899999999999544444444333344555
Q ss_pred HHHHHhC-CcEEE
Q 046623 174 HELIMSQ-GFRVI 185 (218)
Q Consensus 174 ~~~~~~~-gf~~~ 185 (218)
..++.++ +|...
T Consensus 387 ~~~l~~~~~~~~~ 399 (429)
T 1sqg_A 387 KAFLQRTADAELC 399 (429)
T ss_dssp HHHHHHCTTCEEC
T ss_pred HHHHHhCCCCEEe
Confidence 5554544 56654
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.45 E-value=8.4e-13 Score=106.55 Aligned_cols=124 Identities=20% Similarity=0.198 Sum_probs=92.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHh-C-CCCceEEEEeecCCCCccccccCCCC
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEAN-G-LGGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~-~-~~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
..++.+|||+|||+|.++..+++. + ..+++++|+++ +++.++++++.+ + ...++.+..+|+.+... +.++|
T Consensus 97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~----~~~~~ 172 (280)
T 1i9g_A 97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL----PDGSV 172 (280)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC----CTTCE
T ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC----CCCce
Confidence 356789999999999999999864 3 45999999999 999999999887 4 34568999888765532 45689
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHh-CCcEEEE
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMS-QGFRVIE 186 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~-~gf~~~~ 186 (218)
|+|+++. .+...+++.+.++|+|||.++++. .......+....+ .+ .+|...+
T Consensus 173 D~v~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~--~~~~~~~~~~~~l-~~~~~f~~~~ 226 (280)
T 1i9g_A 173 DRAVLDM-----LAPWEVLDAVSRLLVAGGVLMVYV--ATVTQLSRIVEAL-RAKQCWTEPR 226 (280)
T ss_dssp EEEEEES-----SCGGGGHHHHHHHEEEEEEEEEEE--SSHHHHHHHHHHH-HHHSSBCCCE
T ss_pred eEEEECC-----cCHHHHHHHHHHhCCCCCEEEEEe--CCHHHHHHHHHHH-HhcCCcCCcE
Confidence 9999843 355689999999999999444433 3223445555555 54 6776443
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.1e-13 Score=103.21 Aligned_cols=114 Identities=17% Similarity=0.071 Sum_probs=84.6
Q ss_pred chhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecC
Q 046623 36 WDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWG 112 (218)
Q Consensus 36 w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~ 112 (218)
|.........+......++.+|||+|||+|..+..+++... .+++++|+++ +++.+++++...+..+ +.+..+|..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~ 138 (215)
T 2yxe_A 60 ISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN-VIVIVGDGT 138 (215)
T ss_dssp ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEESCGG
T ss_pred eCcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCcc
Confidence 33333343343334445778999999999999999876642 5999999999 9999999998887654 888888764
Q ss_pred CCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 113 SDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 113 ~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.... ..++||+|+++.++++.. +.+.++|+|||.+++.
T Consensus 139 ~~~~----~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~ 176 (215)
T 2yxe_A 139 LGYE----PLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMP 176 (215)
T ss_dssp GCCG----GGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEE
T ss_pred cCCC----CCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEE
Confidence 3221 356899999998887643 4788999999944444
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-11 Score=104.65 Aligned_cols=146 Identities=21% Similarity=0.186 Sum_probs=102.7
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL 116 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 116 (218)
....+.+++.. ..++.+|||+|||+|.+++.+++.+ .+|+++|+++ +++.|++|++.+++. ++++.+|+.+...
T Consensus 277 ~~e~l~~~~~~--~~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~~ 351 (425)
T 2jjq_A 277 QAVNLVRKVSE--LVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVSV 351 (425)
T ss_dssp HHHHHHHHHHH--HCCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCCC
T ss_pred HHHHHHHHhhc--cCCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcCc
Confidence 34455555543 2467799999999999999998875 4999999999 999999999999876 8999998876532
Q ss_pred cccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE-EccCCCCC
Q 046623 117 SQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL-TCQLGGGC 195 (218)
Q Consensus 117 ~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~-~~~~~~~~ 195 (218)
.+||+|++++|.. .....+++.+. .++|+| +++++... ......+..+ .|.+..+ ++...|..
T Consensus 352 ------~~fD~Vv~dPPr~--g~~~~~~~~l~-~l~p~g--ivyvsc~p-~tlarDl~~l----~y~l~~~~~~DmFP~T 415 (425)
T 2jjq_A 352 ------KGFDTVIVDPPRA--GLHPRLVKRLN-REKPGV--IVYVSCNP-ETFARDVKML----DYRIDEIVALDMFPHT 415 (425)
T ss_dssp ------TTCSEEEECCCTT--CSCHHHHHHHH-HHCCSE--EEEEESCH-HHHHHHHHHS----SCCEEEEEEECCSTTS
T ss_pred ------cCCCEEEEcCCcc--chHHHHHHHHH-hcCCCc--EEEEECCh-HHHHhHHhhC----eEEEEEEEEECcCCCC
Confidence 2799999977742 23345666665 589999 44444321 1222233333 2777777 77777776
Q ss_pred CCceeEEEe
Q 046623 196 PEAFAVYEL 204 (218)
Q Consensus 196 ~~~~~l~~~ 204 (218)
.....+..|
T Consensus 416 ~HvE~v~ll 424 (425)
T 2jjq_A 416 PHVELVAKL 424 (425)
T ss_dssp SCCEEEEEE
T ss_pred ceEEEEEEE
Confidence 666555443
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-13 Score=113.98 Aligned_cols=104 Identities=11% Similarity=0.036 Sum_probs=80.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHH-------HHhCC-CCceEEEEeecCCCCccccc
Q 046623 51 DFQNKSVLELGAGAGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNV-------EANGL-GGRVEVRELVWGSDDLSQLS 120 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~-------~~~~~-~~~~~~~~~d~~~~~~~~~~ 120 (218)
..++.+|||||||+|.+++.++. .+..+++|+|+++ +++.|+++. +.+++ ..+++++.+|+.+.....
T Consensus 171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d-- 248 (438)
T 3uwp_A 171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE-- 248 (438)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHH--
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccc--
Confidence 35788999999999999999875 4655699999999 998888765 34455 257999999987654311
Q ss_pred cCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCce
Q 046623 121 ELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHT 157 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~ 157 (218)
....+|+|+++++++ .++....+.++.+.|||||.+
T Consensus 249 ~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLKPGGrI 284 (438)
T 3uwp_A 249 RIANTSVIFVNNFAF-GPEVDHQLKERFANMKEGGRI 284 (438)
T ss_dssp HHHTCSEEEECCTTC-CHHHHHHHHHHHTTSCTTCEE
T ss_pred ccCCccEEEEccccc-CchHHHHHHHHHHcCCCCcEE
Confidence 114799999987765 467778888899999999933
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=7.3e-13 Score=103.90 Aligned_cols=111 Identities=12% Similarity=-0.016 Sum_probs=84.0
Q ss_pred chhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 36 WDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 36 w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
|.....+...+......++.+|||+|||+|.++..++..+ .+++++|+++ +++.++++....+ ++.++.+|+...
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~ 128 (231)
T 1vbf_A 53 TTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLG 128 (231)
T ss_dssp ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGC
T ss_pred cCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccc
Confidence 3343334444333334567899999999999999998887 5999999999 9999999987665 588998887653
Q ss_pred CccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 115 DLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 115 ~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.. ..++||+|+++.++++.. +.+.++|+|||.+++.
T Consensus 129 ~~----~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~ 164 (231)
T 1vbf_A 129 YE----EEKPYDRVVVWATAPTLL------CKPYEQLKEGGIMILP 164 (231)
T ss_dssp CG----GGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEE
T ss_pred cc----cCCCccEEEECCcHHHHH------HHHHHHcCCCcEEEEE
Confidence 22 357899999998887643 4688899999944444
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=7.4e-13 Score=105.48 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=81.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccc---cCCCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLS---ELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~ 125 (218)
.++.+|||+|||+|..++.+++. + ..+++++|+++ +++.++++++..++.++++++.+|..+....... ..++|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 35679999999999999999865 2 35999999999 9999999999988877799998876543211000 14789
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCce
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHT 157 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~ 157 (218)
|+|++... ......+++.+.++|+|||.+
T Consensus 158 D~V~~d~~---~~~~~~~l~~~~~~LkpGG~l 186 (247)
T 1sui_A 158 DFIFVDAD---KDNYLNYHKRLIDLVKVGGVI 186 (247)
T ss_dssp SEEEECSC---STTHHHHHHHHHHHBCTTCCE
T ss_pred EEEEEcCc---hHHHHHHHHHHHHhCCCCeEE
Confidence 99998644 356789999999999999933
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.43 E-value=9.1e-13 Score=112.52 Aligned_cols=114 Identities=13% Similarity=0.136 Sum_probs=83.3
Q ss_pred HHHHHhcCCCCCCCeEEEECCCCCHHHHHHHH-hCCCeEEEecCcc-hHHHH-------HHHHHHhCCC-CceEEEEeec
Q 046623 42 LAQFISTHFDFQNKSVLELGAGAGLPGLTAAR-LGATRVVLTDVKP-LLPGL-------INNVEANGLG-GRVEVRELVW 111 (218)
Q Consensus 42 l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a-------~~~~~~~~~~-~~~~~~~~d~ 111 (218)
+..++......++.+|||+|||+|.+++.+++ .+..+|+++|+++ +++.| +++++..++. .+++++.+|.
T Consensus 231 v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 231 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 34444333345788999999999999999986 4666899999999 99888 8888888753 5688887643
Q ss_pred CCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCc
Q 046623 112 GSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 112 ~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~ 156 (218)
...........++||+|+++..++ .++....+..+.+.|+|||.
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~l~-~~d~~~~L~el~r~LKpGG~ 354 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNFLF-DEDLNKKVEKILQTAKVGCK 354 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCTTC-CHHHHHHHHHHHTTCCTTCE
T ss_pred cccccccccccCCCCEEEEeCccc-cccHHHHHHHHHHhCCCCeE
Confidence 221100000236799999976664 36777888999999999993
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-13 Score=118.15 Aligned_cols=102 Identities=22% Similarity=0.244 Sum_probs=84.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
.++.+|||+|||+|.+++.+++.+..+|+++|++++++.|+++++.+++.++++++.+|+.+.. ..++||+|+++
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~-----~~~~fD~Ivs~ 231 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS-----LPEQVDIIISE 231 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCC-----CSSCEEEEECC
T ss_pred cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCc-----cCCCeEEEEEe
Confidence 5678999999999999999988877799999999877889999999998778999999987643 23589999998
Q ss_pred ccccCC--cchHHHHHHHHHHhcCCCceE
Q 046623 132 DVFYDP--EEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 132 ~~~~~~--~~~~~~l~~~~~lL~~gG~~~ 158 (218)
.+.++. +.....+..+.++|+|||.++
T Consensus 232 ~~~~~~~~e~~~~~l~~~~~~LkpgG~li 260 (480)
T 3b3j_A 232 PMGYMLFNERMLESYLHAKKYLKPSGNMF 260 (480)
T ss_dssp CCHHHHTCHHHHHHHHHGGGGEEEEEEEE
T ss_pred CchHhcCcHHHHHHHHHHHHhcCCCCEEE
Confidence 776543 445667777889999999443
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.6e-13 Score=111.04 Aligned_cols=153 Identities=14% Similarity=0.077 Sum_probs=103.8
Q ss_pred HHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc
Q 046623 40 LILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ 118 (218)
Q Consensus 40 ~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (218)
..+..++.......+.+|||+|||+|.+++.+++. ..+|+++|+++ +++.+++|++.+++. +++++.+|..+....
T Consensus 200 ~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~-~v~~~~~d~~~~~~~- 276 (369)
T 3bt7_A 200 IQMLEWALDVTKGSKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHID-NVQIIRMAAEEFTQA- 276 (369)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCC-SEEEECCCSHHHHHH-
T ss_pred HHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHHHH-
Confidence 44555554422234678999999999999998875 45999999999 999999999999884 589998887543210
Q ss_pred ccc-------------CCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEE
Q 046623 119 LSE-------------LGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 119 ~~~-------------~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~ 185 (218)
... ..+||+|++++|... +...+.++|+++|.++++.+.+ ......+..+ .. ++.+.
T Consensus 277 ~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g------~~~~~~~~l~~~g~ivyvsc~p--~t~ard~~~l-~~-~y~~~ 346 (369)
T 3bt7_A 277 MNGVREFNRLQGIDLKSYQCETIFVDPPRSG------LDSETEKMVQAYPRILYISCNP--ETLCKNLETL-SQ-THKVE 346 (369)
T ss_dssp HSSCCCCTTGGGSCGGGCCEEEEEECCCTTC------CCHHHHHHHTTSSEEEEEESCH--HHHHHHHHHH-HH-HEEEE
T ss_pred HhhccccccccccccccCCCCEEEECcCccc------cHHHHHHHHhCCCEEEEEECCH--HHHHHHHHHH-hh-CcEEE
Confidence 001 137999999777431 2344566677888444444332 2334445555 33 68888
Q ss_pred EE-EccCCCCCCCceeEEEec
Q 046623 186 EL-TCQLGGGCPEAFAVYELI 205 (218)
Q Consensus 186 ~~-~~~~~~~~~~~~~l~~~~ 205 (218)
.+ ++...|.......+..|.
T Consensus 347 ~~~~~D~FP~T~HvE~v~ll~ 367 (369)
T 3bt7_A 347 RLALFDQFPYTHHMQCGVLLT 367 (369)
T ss_dssp EEEEECCSTTSSCCEEEEEEE
T ss_pred EEEeeccCCCCCcEEEEEEEE
Confidence 87 787888777766665554
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.4e-13 Score=110.77 Aligned_cols=106 Identities=17% Similarity=0.056 Sum_probs=82.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhC------CCCceEEEEeecCCCCccc-cc-cCC
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANG------LGGRVEVRELVWGSDDLSQ-LS-ELG 123 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~------~~~~~~~~~~d~~~~~~~~-~~-~~~ 123 (218)
++.+|||+|||+|..+..+++.+..+++++|+++ +++.++++....+ ...++.++.+|+....... .. +.+
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 5679999999999999998876667999999999 9999999887642 1235899999987654211 11 235
Q ss_pred CCcEEEEcccccCC----cchHHHHHHHHHHhcCCCceE
Q 046623 124 EFDMVIMSDVFYDP----EEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~----~~~~~~l~~~~~lL~~gG~~~ 158 (218)
+||+|+++.++++. ++...++..+.++|+|||.++
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li 152 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFI 152 (313)
T ss_dssp CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 89999999988765 446799999999999999433
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=7.5e-13 Score=109.12 Aligned_cols=101 Identities=19% Similarity=0.087 Sum_probs=81.4
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHhCC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCC
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARLGA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
....++.+|||+|||+|.++..+++.+. .+|+++|+++ +++.++++++..+..+ +++..+|..+... ..++|
T Consensus 71 l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~~~----~~~~f 145 (317)
T 1dl5_A 71 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVP----EFSPY 145 (317)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCG----GGCCE
T ss_pred cCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhccc----cCCCe
Confidence 3345788999999999999999986643 4699999999 9999999999888765 8999888765432 35789
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|+|++..++++.. +.+.++|+|||.+++.
T Consensus 146 D~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~ 174 (317)
T 1dl5_A 146 DVIFVTVGVDEVP------ETWFTQLKEGGRVIVP 174 (317)
T ss_dssp EEEEECSBBSCCC------HHHHHHEEEEEEEEEE
T ss_pred EEEEEcCCHHHHH------HHHHHhcCCCcEEEEE
Confidence 9999998887654 5678899999954444
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-13 Score=116.52 Aligned_cols=129 Identities=10% Similarity=0.115 Sum_probs=92.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc-ccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL-SELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~D~Iv 129 (218)
.++.+|||+|||+|.++..+++.+. +++++|+++ +++.++++ +.. .....+........ .+.++||+|+
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~----~~~~~~~~~~~~~l~~~~~~fD~I~ 176 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIR----VRTDFFEKATADDVRRTEGPANVIY 176 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCC----EECSCCSHHHHHHHHHHHCCEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCC----cceeeechhhHhhcccCCCCEEEEE
Confidence 4678999999999999999988876 999999999 99888765 322 22111111111001 1357899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEee----------------ccCChHHHHHHHHHhCCcEEEEEEc
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE----------------VRTRTGDCLHELIMSQGFRVIELTC 189 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~----------------~~~~~~~~~~~~~~~~gf~~~~~~~ 189 (218)
++.++++..++..+++.+.++|+|||.+++..... ......+.+..++++.||.+..+..
T Consensus 177 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~ 252 (416)
T 4e2x_A 177 AANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQR 252 (416)
T ss_dssp EESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred ECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEE
Confidence 99999999999999999999999999444432210 0112345566666999999988843
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.42 E-value=7.8e-13 Score=105.78 Aligned_cols=97 Identities=22% Similarity=0.137 Sum_probs=77.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
++.+|||+|||+|..+..+++.+. +++++|+++ +++.++++.. . .+..+|+.+... +.++||+|++.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~-----~--~~~~~d~~~~~~----~~~~fD~v~~~ 121 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV-----K--NVVEAKAEDLPF----PSGAFEAVLAL 121 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC-----S--CEEECCTTSCCS----CTTCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC-----C--CEEECcHHHCCC----CCCCEEEEEEc
Confidence 678999999999999999988765 899999999 9999887743 1 267777765443 56789999997
Q ss_pred cccc-CCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 132 DVFY-DPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 132 ~~~~-~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
.++. ...+...+++.+.++|+|||.+++..
T Consensus 122 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 152 (260)
T 2avn_A 122 GDVLSYVENKDKAFSEIRRVLVPDGLLIATV 152 (260)
T ss_dssp SSHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhhccccHHHHHHHHHHHcCCCeEEEEEe
Confidence 6554 34679999999999999999444433
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.8e-13 Score=109.25 Aligned_cols=149 Identities=13% Similarity=-0.014 Sum_probs=95.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHH---hCCCCceEEEEeecCCCCccccccCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEA---NGLGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
.++.+|||+|||+|..+..+++. +..+++++|+++ +++.+++++.. .....+++++.+|....... ...++||
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~~~~~fD 171 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ--TPDNTYD 171 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS--SCTTCEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh--ccCCcee
Confidence 35679999999999999999876 346999999999 99999988743 11235689998876543210 0256899
Q ss_pred EEEEcccccCCcc----hHHHHHHHHHHhcCCCceEEEEEeecc--CChHHHHHHHHHhCCcEEEEE---EccCCCCCCC
Q 046623 127 MVIMSDVFYDPEE----MVGLGKTLKRVCGTGRHTVVWAVSEVR--TRTGDCLHELIMSQGFRVIEL---TCQLGGGCPE 197 (218)
Q Consensus 127 ~Iv~~~~~~~~~~----~~~~l~~~~~lL~~gG~~~i~~~~~~~--~~~~~~~~~~~~~~gf~~~~~---~~~~~~~~~~ 197 (218)
+|+++.+...... ..++++.+.++|+|||.+++....... ....+..+.+ ++.||..... ++...++...
T Consensus 172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l-~~~GF~~v~~~~~~vP~yp~g~w 250 (304)
T 3bwc_A 172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFI-RETGFASVQYALMHVPTYPCGSI 250 (304)
T ss_dssp EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHH-HHHTCSEEEEEECCCTTSTTSCC
T ss_pred EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHH-HhCCCCcEEEEEeecccccCcce
Confidence 9999655433211 168999999999999944443322111 1233334444 8889987665 2333334444
Q ss_pred ceeEEE
Q 046623 198 AFAVYE 203 (218)
Q Consensus 198 ~~~l~~ 203 (218)
.+.+..
T Consensus 251 ~f~~as 256 (304)
T 3bwc_A 251 GTLVCS 256 (304)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 444433
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=112.04 Aligned_cols=133 Identities=16% Similarity=0.114 Sum_probs=96.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..++.. +. .+++++|+++ +++.+++|++..++. ++.+..+|....... ...++||+|
T Consensus 258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~--~~~~~fD~V 334 (450)
T 2yxl_A 258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPEI--IGEEVADKV 334 (450)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSSS--SCSSCEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcchh--hccCCCCEE
Confidence 46789999999999999998764 33 5899999999 999999999998875 488888887654310 123679999
Q ss_pred EEcccccCC------cc----------------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhC-CcEEE
Q 046623 129 IMSDVFYDP------EE----------------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQ-GFRVI 185 (218)
Q Consensus 129 v~~~~~~~~------~~----------------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~-gf~~~ 185 (218)
+++.|+... ++ ...+++.+.++|+|||.+++..++.....-++.+..++.++ +|...
T Consensus 335 l~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~~~~ 414 (450)
T 2yxl_A 335 LLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFKLV 414 (450)
T ss_dssp EEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSCEEC
T ss_pred EEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEe
Confidence 997776432 11 15789999999999995554444443333445566655665 67765
Q ss_pred EE
Q 046623 186 EL 187 (218)
Q Consensus 186 ~~ 187 (218)
.+
T Consensus 415 ~~ 416 (450)
T 2yxl_A 415 PL 416 (450)
T ss_dssp CC
T ss_pred ec
Confidence 44
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.8e-12 Score=96.93 Aligned_cols=149 Identities=13% Similarity=0.118 Sum_probs=94.2
Q ss_pred hhHHHHHHHHhcCC-CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 37 DSALILAQFISTHF-DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 37 ~~~~~l~~~l~~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
.+.+.|.+.+.+.. ..++.+|||+|||+|.++..+++. ..+|+++|+++ .. . .++.++.+|+.+.
T Consensus 8 Ra~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~~-----------~-~~v~~~~~D~~~~ 74 (191)
T 3dou_A 8 RAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEMEE-----------I-AGVRFIRCDIFKE 74 (191)
T ss_dssp HHHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCCC-----------C-TTCEEEECCTTSS
T ss_pred cHHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEecccccc-----------C-CCeEEEEccccCH
Confidence 45667777766533 246789999999999999999877 45999999998 31 1 3489999998775
Q ss_pred Ccccc----cc---CCCCcEEEEcccccCC-----------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHH
Q 046623 115 DLSQL----SE---LGEFDMVIMSDVFYDP-----------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHEL 176 (218)
Q Consensus 115 ~~~~~----~~---~~~~D~Iv~~~~~~~~-----------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~ 176 (218)
..... .. .++||+|+++.+.... .....+++.+.++|+|||.+++.+... ....++...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~--~~~~~~~~~l 152 (191)
T 3dou_A 75 TIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG--DMTNDFIAIW 152 (191)
T ss_dssp SHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS--THHHHHHHHH
T ss_pred HHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC--CCHHHHHHHH
Confidence 42110 01 1489999996543221 123567888899999999555444422 3333444444
Q ss_pred HHhCCcEEEEE--EccCCCCCCCceeEE
Q 046623 177 IMSQGFRVIEL--TCQLGGGCPEAFAVY 202 (218)
Q Consensus 177 ~~~~gf~~~~~--~~~~~~~~~~~~~l~ 202 (218)
+..|.-..+ |...++...+.+.+.
T Consensus 153 --~~~F~~v~~~kP~asR~~s~E~y~v~ 178 (191)
T 3dou_A 153 --RKNFSSYKISKPPASRGSSSEIYIMF 178 (191)
T ss_dssp --GGGEEEEEEECC------CCEEEEEE
T ss_pred --HHhcCEEEEECCCCccCCCceEEEEE
Confidence 446776665 666665666655553
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.4e-13 Score=103.88 Aligned_cols=101 Identities=16% Similarity=0.115 Sum_probs=81.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|..+..+++.. ..+|+++|+++ +++.++++++..+..+++.++.+|..+.... ....++||+|+
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~fD~I~ 131 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEK-LELYPLFDVLF 131 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHH-HTTSCCEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh-cccCCCccEEE
Confidence 356799999999999999998663 45999999999 9999999999988877799998887653211 00146899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCc
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~ 156 (218)
++.+. .....+++.+.++|+|||.
T Consensus 132 ~~~~~---~~~~~~l~~~~~~L~pgG~ 155 (233)
T 2gpy_A 132 IDAAK---GQYRRFFDMYSPMVRPGGL 155 (233)
T ss_dssp EEGGG---SCHHHHHHHHGGGEEEEEE
T ss_pred ECCCH---HHHHHHHHHHHHHcCCCeE
Confidence 97664 3678899999999999993
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.2e-12 Score=105.18 Aligned_cols=146 Identities=20% Similarity=0.224 Sum_probs=104.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.+..+|||+|||+|..+..+++. +..+++..|..+.++.++++.+..+ .++++++.+|+.... ...+|++++
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~------~~~~D~~~~ 250 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQE-EEQIDFQEGDFFKDP------LPEADLYIL 250 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC---CCSEEEEESCTTTSC------CCCCSEEEE
T ss_pred ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcc-cCceeeecCccccCC------CCCceEEEe
Confidence 34579999999999999998755 4467888887558888888775544 467999999987643 345899999
Q ss_pred cccccCCcch--HHHHHHHHHHhcCCCceEEEEEee----------------------ccCChHHHHHHHHHhCCcEEEE
Q 046623 131 SDVFYDPEEM--VGLGKTLKRVCGTGRHTVVWAVSE----------------------VRTRTGDCLHELIMSQGFRVIE 186 (218)
Q Consensus 131 ~~~~~~~~~~--~~~l~~~~~lL~~gG~~~i~~~~~----------------------~~~~~~~~~~~~~~~~gf~~~~ 186 (218)
..++|++++. ..+++++++.|+|||+++|+-... .+....+.+..++++.||...+
T Consensus 251 ~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~ 330 (353)
T 4a6d_A 251 ARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQ 330 (353)
T ss_dssp ESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEE
T ss_pred eeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEE
Confidence 9999987654 678999999999999665552111 1122345566777999999988
Q ss_pred EEccCCCCCCCceeEEEecCCcc
Q 046623 187 LTCQLGGGCPEAFAVYELIPPMH 209 (218)
Q Consensus 187 ~~~~~~~~~~~~~~l~~~~~~~~ 209 (218)
+... + ....+..-+|.+|
T Consensus 331 v~~~---~--~~~~~i~ArKgt~ 348 (353)
T 4a6d_A 331 FKKT---G--AIYDAILARKGTH 348 (353)
T ss_dssp EECC---S--SSCEEEEEECCCC
T ss_pred EEEc---C--CceEEEEEEecCc
Confidence 7321 1 2345555666655
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.40 E-value=8e-12 Score=97.79 Aligned_cols=128 Identities=19% Similarity=0.145 Sum_probs=89.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|.++..+++. +. .+|+++|+++ +++.++++++.+ .+++++.+|+.+..... ...++||+|
T Consensus 72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~-~~~~~~D~v 147 (227)
T 1g8a_A 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYR-ALVPKVDVI 147 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGT-TTCCCEEEE
T ss_pred CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhh-cccCCceEE
Confidence 46789999999999999999855 42 5999999999 999999888655 45899998887632100 123589999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCC-------hHHHHHHHHHhCCcEEEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTR-------TGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~-------~~~~~~~~~~~~gf~~~~~ 187 (218)
+++.+ .......++..+.++|+|||.+++......... ..+.+..+ .+. |.+...
T Consensus 148 ~~~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~ 209 (227)
T 1g8a_A 148 FEDVA--QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIER 209 (227)
T ss_dssp EECCC--STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEE
T ss_pred EECCC--CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeE
Confidence 98655 223344569999999999995555522211111 12344555 566 888765
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-12 Score=99.44 Aligned_cols=132 Identities=15% Similarity=0.074 Sum_probs=94.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccC---CCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSEL---GEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~ 125 (218)
.++.+|||+|||+|..++.+++. + ..+++++|+++ +++.++++++..+...+++++.+|..+... ..... ++|
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~-~~~~~~~~~~~ 146 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLD-ELLAAGEAGTF 146 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH-HHHHTTCTTCE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHH-HHHhcCCCCCc
Confidence 45679999999999999999865 2 45999999999 999999999998887779999887643311 11111 689
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccC--------------ChHHHHHHHHHhCCcEEEEEEc
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRT--------------RTGDCLHELIMSQGFRVIELTC 189 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~--------------~~~~~~~~~~~~~gf~~~~~~~ 189 (218)
|+|+++.+ ......+++.+.++|+||| .+++...... ...++.+.+.....+....+|+
T Consensus 147 D~v~~d~~---~~~~~~~l~~~~~~L~pgG--~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~ 219 (229)
T 2avd_A 147 DVAVVDAD---KENCSAYYERCLQLLRPGG--ILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL 219 (229)
T ss_dssp EEEEECSC---STTHHHHHHHHHHHEEEEE--EEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred cEEEECCC---HHHHHHHHHHHHHHcCCCe--EEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEec
Confidence 99999655 3567889999999999999 3333222110 1234555553455676666655
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.9e-12 Score=97.64 Aligned_cols=116 Identities=19% Similarity=0.211 Sum_probs=81.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..++.+|||+|||+|.++..+++.+..+++++|+++ +++.+++++. +++++.+|+.+. + ++||+|+
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~------~-~~~D~v~ 115 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI------S-GKYDTWI 115 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC------C-CCEEEEE
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHC------C-CCeeEEE
Confidence 346789999999999999999887766899999999 9999998864 488888887652 2 6899999
Q ss_pred EcccccCCcc--hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 130 MSDVFYDPEE--MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 130 ~~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+++|+++... ...+++.+.+.+ |. ++.+... .....+...+...| .+..+
T Consensus 116 ~~~p~~~~~~~~~~~~l~~~~~~~---g~-~~~~~~~---~~~~~~~~~~~~~g-~~~~~ 167 (200)
T 1ne2_A 116 MNPPFGSVVKHSDRAFIDKAFETS---MW-IYSIGNA---KARDFLRREFSARG-DVFRE 167 (200)
T ss_dssp ECCCC-------CHHHHHHHHHHE---EE-EEEEEEG---GGHHHHHHHHHHHE-EEEEE
T ss_pred ECCCchhccCchhHHHHHHHHHhc---Cc-EEEEEcC---chHHHHHHHHHHCC-CEEEE
Confidence 9999877532 356788888877 42 3333322 22334444446666 55544
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=3e-12 Score=110.98 Aligned_cols=125 Identities=10% Similarity=0.053 Sum_probs=92.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
++.+|||+|||+|..+..++.. + ..+|+++|+++ +++.+++|++..++. ++.++..|...... ...++||.|+
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~---~~~~~fD~Il 192 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGA---AVPEMFDAIL 192 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHH---HSTTCEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhh---hccccCCEEE
Confidence 6789999999999999999765 2 35899999999 999999999999875 48888887655321 0246899999
Q ss_pred EcccccCC------cc----------------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCC
Q 046623 130 MSDVFYDP------EE----------------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQG 181 (218)
Q Consensus 130 ~~~~~~~~------~~----------------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~g 181 (218)
+++|+... ++ ...+++.+.++|||||.+++.+++.....-++.+..++.+++
T Consensus 193 ~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~ 266 (479)
T 2frx_A 193 LDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYP 266 (479)
T ss_dssp EECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHST
T ss_pred ECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCC
Confidence 98776321 11 246889999999999955544444444445556666666665
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-11 Score=110.49 Aligned_cols=98 Identities=13% Similarity=0.131 Sum_probs=82.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC--CeEEEecCcc-hHHHHHHHHHHh------CCCCceEEEEeecCCCCccccccC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA--TRVVLTDVKP-LLPGLINNVEAN------GLGGRVEVRELVWGSDDLSQLSEL 122 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~--~~v~~~D~~~-~~~~a~~~~~~~------~~~~~~~~~~~d~~~~~~~~~~~~ 122 (218)
.++.+|||+|||+|.++..+++.+. .+|+++|+++ +++.|++++... +. .+++++.+|+.+... ..
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dLp~----~d 794 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEFDS----RL 794 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSCCT----TS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhCCc----cc
Confidence 4678999999999999999988763 5999999999 999999877543 33 358999999887654 56
Q ss_pred CCCcEEEEcccccCCcchH--HHHHHHHHHhcCC
Q 046623 123 GEFDMVIMSDVFYDPEEMV--GLGKTLKRVCGTG 154 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~~~--~~l~~~~~lL~~g 154 (218)
++||+|++..++++..+.. .+++.+.++|+||
T Consensus 795 ~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG 828 (950)
T 3htx_A 795 HDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK 828 (950)
T ss_dssp CSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence 7899999999999876644 5899999999998
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=100.27 Aligned_cols=113 Identities=15% Similarity=0.110 Sum_probs=84.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
.++.+|||+|||+|.++..++ .+++++|+++. ++.+..+|+.+... +.++||+|+++
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~---------------~~~~~~~d~~~~~~----~~~~fD~v~~~ 122 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL---------------DPRVTVCDMAQVPL----EDESVDVAVFC 122 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS---------------STTEEESCTTSCSC----CTTCEEEEEEE
T ss_pred CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC---------------CceEEEeccccCCC----CCCCEeEEEEe
Confidence 456799999999999988772 58999999875 25677777766433 56789999999
Q ss_pred ccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEc
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTC 189 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~ 189 (218)
.++++ .+...+++.+.++|+|||.+++. ....+....+.+..++.+.||.+.....
T Consensus 123 ~~l~~-~~~~~~l~~~~~~L~~gG~l~i~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 178 (215)
T 2zfu_A 123 LSLMG-TNIRDFLEEANRVLKPGGLLKVA-EVSSRFEDVRTFLRAVTKLGFKIVSKDL 178 (215)
T ss_dssp SCCCS-SCHHHHHHHHHHHEEEEEEEEEE-ECGGGCSCHHHHHHHHHHTTEEEEEEEC
T ss_pred hhccc-cCHHHHHHHHHHhCCCCeEEEEE-EcCCCCCCHHHHHHHHHHCCCEEEEEec
Confidence 99875 88999999999999999933333 2222222344455555999999887643
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-12 Score=101.74 Aligned_cols=127 Identities=11% Similarity=0.042 Sum_probs=86.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHH------hCCCCceEEEEeecCCCCccccccCCC
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEA------NGLGGRVEVRELVWGSDDLSQLSELGE 124 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~------~~~~~~~~~~~~d~~~~~~~~~~~~~~ 124 (218)
++.+|||||||+|.+++.+++. +...++++|+++ +++.|+++++. .+. .++.++.+|+..... ...+.++
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~-~~~~~~~ 123 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLP-NFFYKGQ 123 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHH-HHCCTTC
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhh-hhCCCcC
Confidence 4568999999999999999865 345899999999 99999988764 233 459999998865221 1124678
Q ss_pred CcEEEEcccccCCc--------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCC-cEE
Q 046623 125 FDMVIMSDVFYDPE--------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQG-FRV 184 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~--------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~g-f~~ 184 (218)
+|.|+++.+-.+.. ....+++.+.++|+||| .+++.+............+ ...+ |..
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG--~l~~~td~~~~~~~~~~~l-~~~~~f~~ 189 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGG--LVYTITDVLELHDWMCTHF-EEHPLFER 189 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEE--EEEEEESCHHHHHHHHHHH-HTSTTEEE
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCC--EEEEEeCCHHHHHHHHHHH-HHCCCccc
Confidence 99998753321111 12579999999999999 3343334333344444444 5555 443
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.39 E-value=4.7e-12 Score=100.57 Aligned_cols=102 Identities=11% Similarity=-0.018 Sum_probs=77.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHh--------CCCCceEEEEeecCCCCccccccC
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEAN--------GLGGRVEVRELVWGSDDLSQLSEL 122 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~~~ 122 (218)
++.+|||+|||+|.+++.+++.++ .+++++|+++ +++.++++++.+ ++. ++.++.+|+.+... .....
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~~~~l~-~~~~~ 126 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKFLP-NFFEK 126 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSCGG-GTSCT
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEEEeccHHHHHH-Hhccc
Confidence 567999999999999999987764 4899999999 999999998876 654 58999998875321 11245
Q ss_pred CCCcEEEEcccccCC--------cchHHHHHHHHHHhcCCCc
Q 046623 123 GEFDMVIMSDVFYDP--------EEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~--------~~~~~~l~~~~~lL~~gG~ 156 (218)
+.+|.|++..+-... .....++..+.++|+|||.
T Consensus 127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~ 168 (246)
T 2vdv_E 127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGV 168 (246)
T ss_dssp TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEE
T ss_pred cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCE
Confidence 789999865331110 0125899999999999993
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=107.88 Aligned_cols=128 Identities=20% Similarity=0.214 Sum_probs=92.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..++.+|||+|||+|..+..+++.. ..+++++|+++.+. +++.+..+..++++++.+|+.+ .. + +||+|+
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~--~~~~~~~~~~~~v~~~~~d~~~-~~----p--~~D~v~ 252 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA--RHRLDAPDVAGRWKVVEGDFLR-EV----P--HADVHV 252 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT--TCCCCCGGGTTSEEEEECCTTT-CC----C--CCSEEE
T ss_pred ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh--cccccccCCCCCeEEEecCCCC-CC----C--CCcEEE
Confidence 3456799999999999999987653 45789999865433 3333333445679999999862 22 3 899999
Q ss_pred EcccccCCcch--HHHHHHHHHHhcCCCceEEEEEeec---------------------cCChHHHHHHHHHhCCcEEEE
Q 046623 130 MSDVFYDPEEM--VGLGKTLKRVCGTGRHTVVWAVSEV---------------------RTRTGDCLHELIMSQGFRVIE 186 (218)
Q Consensus 130 ~~~~~~~~~~~--~~~l~~~~~lL~~gG~~~i~~~~~~---------------------~~~~~~~~~~~~~~~gf~~~~ 186 (218)
+..++|+..+. ..+++++.++|+|||.+++.-.... +....+.+..++++.||...+
T Consensus 253 ~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 332 (348)
T 3lst_A 253 LKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDR 332 (348)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred EehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEE
Confidence 99999988766 6999999999999995554421110 012345566667999999988
Q ss_pred E
Q 046623 187 L 187 (218)
Q Consensus 187 ~ 187 (218)
+
T Consensus 333 ~ 333 (348)
T 3lst_A 333 V 333 (348)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-11 Score=94.50 Aligned_cols=134 Identities=13% Similarity=0.132 Sum_probs=85.6
Q ss_pred hHHHHHHHHhcCC-CCCCCeEEEECCCCCHHHHHHHHh-C--CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecC
Q 046623 38 SALILAQFISTHF-DFQNKSVLELGAGAGLPGLTAARL-G--ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWG 112 (218)
Q Consensus 38 ~~~~l~~~l~~~~-~~~~~~vLDlG~G~G~~~~~l~~~-~--~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~ 112 (218)
++..|.+.+.... ..++.+|||+|||+|.++..+++. + ..+|+++|+++ +. . .++.++.+|+.
T Consensus 6 ~~~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~-----------~-~~v~~~~~d~~ 73 (201)
T 2plw_A 6 AAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP-----------I-PNVYFIQGEIG 73 (201)
T ss_dssp THHHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC-----------C-TTCEEEECCTT
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC-----------C-CCceEEEcccc
Confidence 3445555554422 245679999999999999999865 3 35899999998 41 1 34788888887
Q ss_pred CCCcc---------------------ccccCCCCcEEEEcccccCCc----c-------hHHHHHHHHHHhcCCCceEEE
Q 046623 113 SDDLS---------------------QLSELGEFDMVIMSDVFYDPE----E-------MVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 113 ~~~~~---------------------~~~~~~~~D~Iv~~~~~~~~~----~-------~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+.... ...+..+||+|+++.+++... + ..++++.+.++|+|||.+++.
T Consensus 74 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 153 (201)
T 2plw_A 74 KDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVK 153 (201)
T ss_dssp TTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 65400 001346899999976655421 1 124788899999999944443
Q ss_pred EEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 161 AVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
.. ......+....+ . ..|....+
T Consensus 154 ~~--~~~~~~~l~~~l-~-~~f~~v~~ 176 (201)
T 2plw_A 154 MY--LGSQTNNLKTYL-K-GMFQLVHT 176 (201)
T ss_dssp EE--CSTTHHHHHHHH-H-TTEEEEEE
T ss_pred Ee--CCCCHHHHHHHH-H-HHHheEEE
Confidence 32 223344555444 4 35665554
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-12 Score=101.73 Aligned_cols=96 Identities=21% Similarity=0.142 Sum_probs=78.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
++.+|||+|||+|..++.+++. + ..+|+++|+++ +++.++++++..+..++++++.+|..+.... ..+ ||+|+
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~-fD~v~ 131 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAG---QRD-IDILF 131 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTT---CCS-EEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhcc---CCC-CCEEE
Confidence 5679999999999999999865 2 35999999999 9999999999888766799998876542110 235 99999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCC
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
++.. ......+++.+.++|+|||
T Consensus 132 ~~~~---~~~~~~~l~~~~~~LkpgG 154 (210)
T 3c3p_A 132 MDCD---VFNGADVLERMNRCLAKNA 154 (210)
T ss_dssp EETT---TSCHHHHHHHHGGGEEEEE
T ss_pred EcCC---hhhhHHHHHHHHHhcCCCe
Confidence 8633 3667899999999999999
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-12 Score=99.44 Aligned_cols=131 Identities=15% Similarity=0.105 Sum_probs=88.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHH----HhCCCCceEEEEeecCCCCccccccCCCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVE----ANGLGGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~----~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
.++.+|||+|||+|.++..+++.. ..+|+++|+++ +++.+.++.+ ..+.. ++.++.+|+.+... ..+.
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~d~~~l~~----~~~~- 99 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWATAERLPP----LSGV- 99 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEECCSTTCCS----CCCE-
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEecchhhCCC----CCCC-
Confidence 467799999999999999998774 45999999999 8886544332 33433 58999999887543 3344
Q ss_pred cEEEEcccc-----cCCcchHHHHHHHHHHhcCCCceEEEEEeec---------------cCChHHHHHHHHHhCCcEEE
Q 046623 126 DMVIMSDVF-----YDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV---------------RTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 126 D~Iv~~~~~-----~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~---------------~~~~~~~~~~~~~~~gf~~~ 185 (218)
|.+++..++ ++..+...+++.+.++|||||.+++...... .....+.+..++.+.||.+.
T Consensus 100 d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~ 179 (218)
T 3mq2_A 100 GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLA 179 (218)
T ss_dssp EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEE
T ss_pred CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCce
Confidence 666643322 1334558999999999999994444322111 01123335556689999998
Q ss_pred EEE
Q 046623 186 ELT 188 (218)
Q Consensus 186 ~~~ 188 (218)
.+.
T Consensus 180 ~~~ 182 (218)
T 3mq2_A 180 DCR 182 (218)
T ss_dssp EEE
T ss_pred eee
Confidence 873
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.5e-12 Score=100.81 Aligned_cols=134 Identities=12% Similarity=0.017 Sum_probs=94.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC--CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc----------
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG--ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ---------- 118 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~--~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~---------- 118 (218)
.++.+|||+|||+|..+..+++.. ..+++++|+++ +++.++++++..+..+++.+..+|..+.....
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 356799999999999999998763 35999999999 99999999998887767899988764321100
Q ss_pred -ccc-C-CCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccC--------------ChHHHHHHHHHhCC
Q 046623 119 -LSE-L-GEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRT--------------RTGDCLHELIMSQG 181 (218)
Q Consensus 119 -~~~-~-~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~--------------~~~~~~~~~~~~~g 181 (218)
..+ . ++||+|+++.. ......+++.+.++|+||| .+++...... ...++...+.....
T Consensus 139 ~~f~~~~~~fD~I~~~~~---~~~~~~~l~~~~~~L~pgG--~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDAD---KENYPNYYPLILKLLKPGG--LLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSL 213 (239)
T ss_dssp TTTCCSTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEE--EEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTT
T ss_pred ccccCCCCCcCEEEEeCC---HHHHHHHHHHHHHHcCCCe--EEEEEccccCCcccCccccchHHHHHHHHHHHHhhCCC
Confidence 001 2 78999998643 3556789999999999999 3333321110 12344444434566
Q ss_pred cEEEEEEcc
Q 046623 182 FRVIELTCQ 190 (218)
Q Consensus 182 f~~~~~~~~ 190 (218)
|....+|+.
T Consensus 214 ~~~~~~p~~ 222 (239)
T 2hnk_A 214 VDVSLVPIA 222 (239)
T ss_dssp EEEEEECST
T ss_pred eEEEEEEcC
Confidence 777767654
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-12 Score=107.59 Aligned_cols=146 Identities=14% Similarity=-0.003 Sum_probs=97.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC------CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCC
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGA------TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~------~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
++.+|||+|||+|.+++.+++... .+++++|+++ +++.|+.|+...+. ++.+..+|..... ..++|
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~-----~~~~f 202 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL-----LVDPV 202 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC-----CCCCE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCcc-----ccCCc
Confidence 567999999999999998865431 5899999999 99999999988886 3788888876532 34689
Q ss_pred cEEEEcccccCCcc-----------------h-HHHHHHHHHHhcCCCceEEEEEeec-cCChHHHHHHHHHhCCcEE--
Q 046623 126 DMVIMSDVFYDPEE-----------------M-VGLGKTLKRVCGTGRHTVVWAVSEV-RTRTGDCLHELIMSQGFRV-- 184 (218)
Q Consensus 126 D~Iv~~~~~~~~~~-----------------~-~~~l~~~~~lL~~gG~~~i~~~~~~-~~~~~~~~~~~~~~~gf~~-- 184 (218)
|+|++++|++.... . ..++..+.+.|+|||.+++++.... .....+.++..+.+.++..
T Consensus 203 D~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~~~i 282 (344)
T 2f8l_A 203 DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGI 282 (344)
T ss_dssp EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEE
T ss_pred cEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCeEEEe
Confidence 99999999743211 1 2578999999999995555553331 1222344444446666643
Q ss_pred EEEEccCCCCCCCceeEEEec
Q 046623 185 IELTCQLGGGCPEAFAVYELI 205 (218)
Q Consensus 185 ~~~~~~~~~~~~~~~~l~~~~ 205 (218)
+..|............++.+.
T Consensus 283 i~lp~~~F~~~~~~~~i~vl~ 303 (344)
T 2f8l_A 283 IKLPETLFKSEQARKSILILE 303 (344)
T ss_dssp EECCGGGSCC-CCCEEEEEEE
T ss_pred eeCChhhccCCCCceEEEEEE
Confidence 333433333333334444443
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.6e-12 Score=99.67 Aligned_cols=101 Identities=14% Similarity=0.117 Sum_probs=80.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccc---cCCCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLS---ELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~ 125 (218)
.++.+|||+|||+|..++.+++. + ..+++++|+++ +++.++++++..++.++++++.+|..+....... ..++|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 35679999999999999999865 3 35999999999 9999999999988877799998876543211000 14689
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
|+|++... ......+++.+.++|+|||
T Consensus 149 D~I~~d~~---~~~~~~~l~~~~~~L~pGG 175 (237)
T 3c3y_A 149 DFGFVDAD---KPNYIKYHERLMKLVKVGG 175 (237)
T ss_dssp EEEEECSC---GGGHHHHHHHHHHHEEEEE
T ss_pred CEEEECCc---hHHHHHHHHHHHHhcCCCe
Confidence 99998643 2467889999999999999
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.3e-12 Score=100.03 Aligned_cols=99 Identities=18% Similarity=0.172 Sum_probs=76.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..++.+|||+|||+|.++..+++....+|+++|+++ +++.+++++...+..+ +.+..+|.... . ....+||+|+
T Consensus 89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~-~---~~~~~fD~Ii 163 (235)
T 1jg1_A 89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDGSKG-F---PPKAPYDVII 163 (235)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGC-C---GGGCCEEEEE
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEECCcccC-C---CCCCCccEEE
Confidence 356789999999999999999766436899999999 9999999999888754 88888886222 1 1334699999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
++.++++.. +.+.++|+|||.+++.
T Consensus 164 ~~~~~~~~~------~~~~~~L~pgG~lvi~ 188 (235)
T 1jg1_A 164 VTAGAPKIP------EPLIEQLKIGGKLIIP 188 (235)
T ss_dssp ECSBBSSCC------HHHHHTEEEEEEEEEE
T ss_pred ECCcHHHHH------HHHHHhcCCCcEEEEE
Confidence 988876533 4678899999944333
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.36 E-value=7.2e-12 Score=103.97 Aligned_cols=116 Identities=17% Similarity=0.088 Sum_probs=81.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CC-CeEEEecCcc-hHHHHHHHHHHhC----------CCCceEEEEeecCCCCccc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GA-TRVVLTDVKP-LLPGLINNVEANG----------LGGRVEVRELVWGSDDLSQ 118 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~~D~~~-~~~~a~~~~~~~~----------~~~~~~~~~~d~~~~~~~~ 118 (218)
.++.+|||+|||+|.++..+++. ++ .+|+++|+++ +++.+++++...+ ...++++..+|+.+....
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~- 182 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED- 182 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc-
Confidence 57889999999999999999875 54 6999999999 9999999998532 224689999888765210
Q ss_pred cccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHH
Q 046623 119 LSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHEL 176 (218)
Q Consensus 119 ~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~ 176 (218)
.+.++||+|+++.+ ....+++.+.++|+|||.++++ ........+.++.+
T Consensus 183 -~~~~~fD~V~~~~~-----~~~~~l~~~~~~LkpgG~lv~~--~~~~~~~~~~~~~l 232 (336)
T 2b25_A 183 -IKSLTFDAVALDML-----NPHVTLPVFYPHLKHGGVCAVY--VVNITQVIELLDGI 232 (336)
T ss_dssp ------EEEEEECSS-----STTTTHHHHGGGEEEEEEEEEE--ESSHHHHHHHHHHH
T ss_pred -cCCCCeeEEEECCC-----CHHHHHHHHHHhcCCCcEEEEE--eCCHHHHHHHHHHH
Confidence 13457999998543 2344889999999999944433 33333444555554
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=9.8e-12 Score=105.92 Aligned_cols=151 Identities=15% Similarity=0.010 Sum_probs=99.8
Q ss_pred HHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC
Q 046623 40 LILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD 115 (218)
Q Consensus 40 ~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 115 (218)
..+.+++.. ....++.+|||+|||+|.+++.+++. +..+++++|+++ +++.+ .++++..+|+....
T Consensus 25 ~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~ 94 (421)
T 2ih2_A 25 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWE 94 (421)
T ss_dssp HHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCC
T ss_pred HHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhcC
Confidence 334555544 22235669999999999999998764 346999999999 88766 24888888876542
Q ss_pred ccccccCCCCcEEEEcccccCCcc-----------------------------hHHHHHHHHHHhcCCCceEEEEEeec-
Q 046623 116 LSQLSELGEFDMVIMSDVFYDPEE-----------------------------MVGLGKTLKRVCGTGRHTVVWAVSEV- 165 (218)
Q Consensus 116 ~~~~~~~~~~D~Iv~~~~~~~~~~-----------------------------~~~~l~~~~~lL~~gG~~~i~~~~~~- 165 (218)
..++||+|++|+|+..... ...+++.+.++|+|||.+.+++....
T Consensus 95 -----~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l 169 (421)
T 2ih2_A 95 -----PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWL 169 (421)
T ss_dssp -----CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGG
T ss_pred -----ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHh
Confidence 3468999999999854322 12668889999999995555554331
Q ss_pred -cCChHHHHHHHHHhCCc-EEEEEEccCCCCCCCceeEEEecCC
Q 046623 166 -RTRTGDCLHELIMSQGF-RVIELTCQLGGGCPEAFAVYELIPP 207 (218)
Q Consensus 166 -~~~~~~~~~~~~~~~gf-~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (218)
...... ++..+.+.++ .+...+ ...++......++.+.+.
T Consensus 170 ~~~~~~~-lr~~l~~~~~~~i~~l~-~~F~~~~~~~~il~~~k~ 211 (421)
T 2ih2_A 170 VLEDFAL-LREFLAREGKTSVYYLG-EVFPQKKVSAVVIRFQKS 211 (421)
T ss_dssp TCGGGHH-HHHHHHHHSEEEEEEEE-SCSTTCCCCEEEEEEESS
T ss_pred cCccHHH-HHHHHHhcCCeEEEECC-CCCCCCCccEEEEEEEeC
Confidence 112334 4444455565 334446 444566666677776654
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-12 Score=100.94 Aligned_cols=100 Identities=16% Similarity=0.117 Sum_probs=79.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccC--CCCcE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSEL--GEFDM 127 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~D~ 127 (218)
++.+|||+|||+|..++.+++. + ..+++++|+++ +++.++++++..++.++++++.+|..+......... ++||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 5679999999999999999865 2 35999999999 999999999998887779999877643211100012 68999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
|++... ......+++.+.++|+|||
T Consensus 152 V~~d~~---~~~~~~~l~~~~~~LkpgG 176 (232)
T 3cbg_A 152 IFIDAD---KRNYPRYYEIGLNLLRRGG 176 (232)
T ss_dssp EEECSC---GGGHHHHHHHHHHTEEEEE
T ss_pred EEECCC---HHHHHHHHHHHHHHcCCCe
Confidence 998654 2567889999999999999
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.2e-12 Score=99.33 Aligned_cols=105 Identities=13% Similarity=0.111 Sum_probs=80.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC------CeEEEecCcc-hHHHHHHHHHHhCC----CCceEEEEeecCCCCccccc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA------TRVVLTDVKP-LLPGLINNVEANGL----GGRVEVRELVWGSDDLSQLS 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~------~~v~~~D~~~-~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~ 120 (218)
.++.+|||+|||+|..+..+++... .+|+++|+++ +++.++++++..+. ..++.++.+|..........
T Consensus 79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 158 (227)
T 2pbf_A 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK 158 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence 4678999999999999999987642 4999999999 99999999988763 34589998887654310001
Q ss_pred cCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 121 ELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
..++||+|+++.++++ +++.+.++|+|||.+++.+.
T Consensus 159 ~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 159 ELGLFDAIHVGASASE------LPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHCCEEEEEECSBBSS------CCHHHHHHEEEEEEEEEEEE
T ss_pred cCCCcCEEEECCchHH------HHHHHHHhcCCCcEEEEEEc
Confidence 4578999999877654 45788999999995444433
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-12 Score=102.70 Aligned_cols=132 Identities=14% Similarity=0.056 Sum_probs=87.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc--hHHHH---HHHHHHhCCCCceEEEEeecCCCCccccccCCCCc
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP--LLPGL---INNVEANGLGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~--~~~~a---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
++.+|||+|||+|.++..+++. +..+|+++|+|+ +++.| +++....+.. ++.+..+|...... . ..+.+|
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~-~--~~d~v~ 99 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESLPF-E--LKNIAD 99 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBCCG-G--GTTCEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHhhh-h--ccCeEE
Confidence 5779999999999999998853 345899999995 55554 7777676664 48899888776532 1 225677
Q ss_pred EEEEcccccC-----CcchHHHHHHHHHHhcCCCceEEEEEeec---------c----C---C-hHHHHHHHHHhCCcEE
Q 046623 127 MVIMSDVFYD-----PEEMVGLGKTLKRVCGTGRHTVVWAVSEV---------R----T---R-TGDCLHELIMSQGFRV 184 (218)
Q Consensus 127 ~Iv~~~~~~~-----~~~~~~~l~~~~~lL~~gG~~~i~~~~~~---------~----~---~-~~~~~~~~~~~~gf~~ 184 (218)
.|.++.++.+ ......++..+.++|||||.+++...... + . + ..+.+...+.+.||.+
T Consensus 100 ~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v 179 (225)
T 3p2e_A 100 SISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRI 179 (225)
T ss_dssp EEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEE
T ss_pred EEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCe
Confidence 7777654322 12345789999999999995555211110 0 0 0 1111455558899998
Q ss_pred EEEE
Q 046623 185 IELT 188 (218)
Q Consensus 185 ~~~~ 188 (218)
..+.
T Consensus 180 ~~~~ 183 (225)
T 3p2e_A 180 DDVK 183 (225)
T ss_dssp EEEE
T ss_pred eeee
Confidence 8873
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-11 Score=100.04 Aligned_cols=107 Identities=12% Similarity=0.127 Sum_probs=81.8
Q ss_pred CCCeEEEECCCC---CHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-------ccc
Q 046623 53 QNKSVLELGAGA---GLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-------QLS 120 (218)
Q Consensus 53 ~~~~vLDlG~G~---G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~~ 120 (218)
...+|||||||+ |.++..+.+. +..+|+++|+++ +++.+++++... .++.++.+|+.+.... ...
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~---~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD---PNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC---TTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC---CCeEEEEeeCCCchhhhccchhhccC
Confidence 347999999999 9887666554 345999999999 999999887432 4699999998763210 111
Q ss_pred cCCCCcEEEEcccccCCcc--hHHHHHHHHHHhcCCCceEEEEE
Q 046623 121 ELGEFDMVIMSDVFYDPEE--MVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
+.++||+|+++.++|+..+ ...+++++.++|+|||.+++...
T Consensus 154 d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 154 DFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp CTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 3358999999999998655 89999999999999995544433
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=6.3e-12 Score=98.26 Aligned_cols=99 Identities=20% Similarity=0.241 Sum_probs=77.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CC-CeEEEecCcc-hHHHHHHHHHHhCC----CCceEEEEeecCCCCccccccCCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GA-TRVVLTDVKP-LLPGLINNVEANGL----GGRVEVRELVWGSDDLSQLSELGE 124 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~~D~~~-~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~ 124 (218)
.++.+|||+|||+|..+..+++. +. .+|+++|+++ +++.+++++...+. ..++.+..+|...... ..++
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~ 151 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA----EEAP 151 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG----GGCC
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc----cCCC
Confidence 46789999999999999998765 43 4999999999 99999999988654 3458899888764322 3568
Q ss_pred CcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 125 FDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
||+|+++.++.+ +++.+.++|+|||.+++.
T Consensus 152 fD~i~~~~~~~~------~~~~~~~~LkpgG~lv~~ 181 (226)
T 1i1n_A 152 YDAIHVGAAAPV------VPQALIDQLKPGGRLILP 181 (226)
T ss_dssp EEEEEECSBBSS------CCHHHHHTEEEEEEEEEE
T ss_pred cCEEEECCchHH------HHHHHHHhcCCCcEEEEE
Confidence 999999877643 446788999999944443
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.7e-11 Score=101.75 Aligned_cols=118 Identities=17% Similarity=0.192 Sum_probs=88.3
Q ss_pred HHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCC---------------------------------------CeE
Q 046623 40 LILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGA---------------------------------------TRV 79 (218)
Q Consensus 40 ~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~---------------------------------------~~v 79 (218)
..++..+.. ..-.++.++||++||+|.+++.++..+. .++
T Consensus 187 e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 266 (393)
T 3k0b_A 187 ETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI 266 (393)
T ss_dssp HHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence 345555444 2234677999999999999999875432 359
Q ss_pred EEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC----cchHHHHHHHHHHhcC-
Q 046623 80 VLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP----EEMVGLGKTLKRVCGT- 153 (218)
Q Consensus 80 ~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~----~~~~~~l~~~~~lL~~- 153 (218)
+++|+++ +++.|+.|++.+++.+.+++...|+.+.. ...+||+|++|+|+... .....+...+.+.|++
T Consensus 267 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~-----~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~ 341 (393)
T 3k0b_A 267 IGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQ-----TEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRM 341 (393)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCC-----CCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCC-----CCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcC
Confidence 9999999 99999999999998878999999887654 33589999999998643 3455566667777776
Q ss_pred -CCceEEEEE
Q 046623 154 -GRHTVVWAV 162 (218)
Q Consensus 154 -gG~~~i~~~ 162 (218)
||.+.+++.
T Consensus 342 ~g~~~~iit~ 351 (393)
T 3k0b_A 342 PTWSVYVLTS 351 (393)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEC
Confidence 775555543
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.7e-11 Score=100.28 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=89.6
Q ss_pred HHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCC---------------------------------------CeE
Q 046623 40 LILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGA---------------------------------------TRV 79 (218)
Q Consensus 40 ~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~---------------------------------------~~v 79 (218)
..|+..+.. ..-.++..+||.+||+|.+.+.++..+. .++
T Consensus 180 e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v 259 (384)
T 3ldg_A 180 ENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI 259 (384)
T ss_dssp HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence 345555444 2234678999999999999999875432 259
Q ss_pred EEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC----cchHHHHHHHHHHhcC-
Q 046623 80 VLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP----EEMVGLGKTLKRVCGT- 153 (218)
Q Consensus 80 ~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~----~~~~~~l~~~~~lL~~- 153 (218)
+++|+++ +++.|+.|++.+++.+.+++...|+.+.. ...+||+|++|+|+... .+..++...+.+.|++
T Consensus 260 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~-----~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~ 334 (384)
T 3ldg_A 260 SGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFK-----TNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPL 334 (384)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCC-----CCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCC-----ccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhC
Confidence 9999999 99999999999999888999998887654 33589999999998642 3456677777778876
Q ss_pred -CCceEEEEE
Q 046623 154 -GRHTVVWAV 162 (218)
Q Consensus 154 -gG~~~i~~~ 162 (218)
||.+.+++.
T Consensus 335 ~g~~~~iit~ 344 (384)
T 3ldg_A 335 KTWSQFILTN 344 (384)
T ss_dssp TTSEEEEEES
T ss_pred CCcEEEEEEC
Confidence 775555543
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.3e-11 Score=100.59 Aligned_cols=117 Identities=15% Similarity=0.071 Sum_probs=88.5
Q ss_pred HHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCC---------------------------------------CeE
Q 046623 40 LILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGA---------------------------------------TRV 79 (218)
Q Consensus 40 ~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~---------------------------------------~~v 79 (218)
..++..+.. ..-.++.+|||++||+|.+++.++..+. .+|
T Consensus 181 e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 260 (385)
T 3ldu_A 181 ETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI 260 (385)
T ss_dssp HHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred HHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence 345555544 2335678999999999999999875532 369
Q ss_pred EEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC----cchHHHHHHHHHHhcC-
Q 046623 80 VLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP----EEMVGLGKTLKRVCGT- 153 (218)
Q Consensus 80 ~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~----~~~~~~l~~~~~lL~~- 153 (218)
+++|+++ +++.|+.|+..+++.+.+++...|+.+.. ...+||+|++|+|+... .....+...+.+.|++
T Consensus 261 ~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~-----~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~ 335 (385)
T 3ldu_A 261 YGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFK-----SEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKL 335 (385)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCC-----CSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTS
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcC-----cCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhC
Confidence 9999999 99999999999998777999998887654 34589999999997642 3456677777777776
Q ss_pred -CCceEEEE
Q 046623 154 -GRHTVVWA 161 (218)
Q Consensus 154 -gG~~~i~~ 161 (218)
|+.+.+++
T Consensus 336 ~g~~~~iit 344 (385)
T 3ldu_A 336 KNWSYYLIT 344 (385)
T ss_dssp BSCEEEEEE
T ss_pred CCCEEEEEE
Confidence 77444443
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.2e-11 Score=100.09 Aligned_cols=121 Identities=17% Similarity=0.145 Sum_probs=88.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.+..+|||+|||+|..+..+++. +..+++++|+ + +++.++++ .+++++.+|+.+ .. +.+ |+|+
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~----p~~--D~v~ 266 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFD-GV----PKG--DAIF 266 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CC----CCC--SEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCC-CC----CCC--CEEE
Confidence 45679999999999999998754 4468999999 6 77665432 459999999875 22 332 9999
Q ss_pred EcccccCCcc--hHHHHHHHHHHhcCCCceEEEEEee--------------------------ccCChHHHHHHHHHhCC
Q 046623 130 MSDVFYDPEE--MVGLGKTLKRVCGTGRHTVVWAVSE--------------------------VRTRTGDCLHELIMSQG 181 (218)
Q Consensus 130 ~~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~~~~~--------------------------~~~~~~~~~~~~~~~~g 181 (218)
+..++|+..+ ...+++++.+.|+|||.+++.-... .+....+.+..++++.|
T Consensus 267 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AG 346 (368)
T 3reo_A 267 IKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASG 346 (368)
T ss_dssp EESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTT
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCC
Confidence 9999987654 4589999999999999555542110 01122445666779999
Q ss_pred cEEEEE
Q 046623 182 FRVIEL 187 (218)
Q Consensus 182 f~~~~~ 187 (218)
|...++
T Consensus 347 F~~v~~ 352 (368)
T 3reo_A 347 FRGFKV 352 (368)
T ss_dssp CCEEEE
T ss_pred CeeeEE
Confidence 998887
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.2e-12 Score=102.71 Aligned_cols=156 Identities=13% Similarity=-0.029 Sum_probs=91.0
Q ss_pred cchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHH-HHhCCCCceEEE--Eeec
Q 046623 35 LWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNV-EANGLGGRVEVR--ELVW 111 (218)
Q Consensus 35 ~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~-~~~~~~~~~~~~--~~d~ 111 (218)
.-.++..+...+......++.+|||+|||+|.++..+++. .+|+++|++++...++++. .......++.++ .+|+
T Consensus 64 ~sR~a~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~ 141 (276)
T 2wa2_A 64 VSRGTAKLAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDV 141 (276)
T ss_dssp -CHHHHHHHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCG
T ss_pred CchHHHHHHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcH
Confidence 3456666776666533356789999999999999999877 4899999998322221110 000011147777 7776
Q ss_pred CCCCccccccCCCCcEEEEcccccCCcch-------HHHHHHHHHHhcCCC--ceEEEEEeeccCChHHHHHHHHHhCCc
Q 046623 112 GSDDLSQLSELGEFDMVIMSDVFYDPEEM-------VGLGKTLKRVCGTGR--HTVVWAVSEVRTRTGDCLHELIMSQGF 182 (218)
Q Consensus 112 ~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~-------~~~l~~~~~lL~~gG--~~~i~~~~~~~~~~~~~~~~~~~~~gf 182 (218)
... +.++||+|+++.. +..... ..+++.+.++|+||| .+++-...+......+.+..+ . ..|
T Consensus 142 ~~l------~~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~~~~~~~~l~~l-~-~~f 212 (276)
T 2wa2_A 142 TKM------EPFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPYSCDVLEALMKM-Q-ARF 212 (276)
T ss_dssp GGC------CCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCCSHHHHHHHHHH-H-HHH
T ss_pred hhC------CCCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCCchhHHHHHHHH-H-HHc
Confidence 542 3568999999755 322111 136888999999999 666643322111112444554 2 234
Q ss_pred EEEEE-EccCCCCCCCceeE
Q 046623 183 RVIEL-TCQLGGGCPEAFAV 201 (218)
Q Consensus 183 ~~~~~-~~~~~~~~~~~~~l 201 (218)
....+ |...+....+++.+
T Consensus 213 ~~v~v~P~~sR~~s~E~y~v 232 (276)
T 2wa2_A 213 GGGLIRVPLSRNSTHEMYFV 232 (276)
T ss_dssp CCEEECCTTSCTTCCCEEEE
T ss_pred CCEEEEcCCCCCcchheEEe
Confidence 33333 55555444444433
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-11 Score=104.37 Aligned_cols=127 Identities=16% Similarity=0.140 Sum_probs=91.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh--------------CCCeEEEecCcc-hHHHHHHHHHHhCCCC-ceEEEEeecCCCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL--------------GATRVVLTDVKP-LLPGLINNVEANGLGG-RVEVRELVWGSDD 115 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~--------------~~~~v~~~D~~~-~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~ 115 (218)
.++.+|||.|||+|.+.+.+++. ...+++|+|+++ ++..|+.|+...++.. ..++..+|.....
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence 45679999999999999888643 224799999999 9999999998888742 4778888876543
Q ss_pred ccccccCCCCcEEEEcccccCCcc-----------------hHHHHHHHHHHhcCCCceEEEEEeec--cCChHHHHH-H
Q 046623 116 LSQLSELGEFDMVIMSDVFYDPEE-----------------MVGLGKTLKRVCGTGRHTVVWAVSEV--RTRTGDCLH-E 175 (218)
Q Consensus 116 ~~~~~~~~~~D~Iv~~~~~~~~~~-----------------~~~~l~~~~~lL~~gG~~~i~~~~~~--~~~~~~~~~-~ 175 (218)
...+||+|++|+|+..... ...++..+.++|+|||++.+++.... +....+.++ .
T Consensus 250 -----~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~~~~~iR~~ 324 (445)
T 2okc_A 250 -----PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKR 324 (445)
T ss_dssp -----CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHH
T ss_pred -----ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCcccccCcHHHHHHHH
Confidence 2348999999999875321 13788999999999996666665431 222333344 4
Q ss_pred HHHhCCcE
Q 046623 176 LIMSQGFR 183 (218)
Q Consensus 176 ~~~~~gf~ 183 (218)
+++...+.
T Consensus 325 L~~~~~l~ 332 (445)
T 2okc_A 325 LLQDFNLH 332 (445)
T ss_dssp HHHHEEEE
T ss_pred HHhcCcEE
Confidence 54454444
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.5e-12 Score=105.35 Aligned_cols=105 Identities=13% Similarity=0.076 Sum_probs=77.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHH--hCC-CCceEEEEeecCCCCccccccCCCCcE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEA--NGL-GGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~--~~~-~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
++.+|||+|||+|..+..+++. +..+++++|+++ +++.+++++.. ++. ..+++++.+|+.+... ...++||+
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~---~~~~~fDv 192 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE---NVTNTYDV 192 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH---HCCSCEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHh---hcCCCceE
Confidence 4679999999999999999876 456999999999 99999999765 222 3568999887654211 13468999
Q ss_pred EEEccc--ccCCcc--hHHHHHHHHHHhcCCCceEEE
Q 046623 128 VIMSDV--FYDPEE--MVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 128 Iv~~~~--~~~~~~--~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|+++.+ ...... ..++++.+.++|+|||.+++.
T Consensus 193 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 229 (321)
T 2pt6_A 193 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 229 (321)
T ss_dssp EEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 998643 111111 178999999999999944443
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=6.2e-12 Score=102.74 Aligned_cols=105 Identities=14% Similarity=0.081 Sum_probs=76.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHH--hCC-CCceEEEEeecCCCCccccccCCCCcE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEA--NGL-GGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~--~~~-~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
++.+|||+|||+|..+..+++. +..+++++|+++ +++.+++++.. .+. ..+++++.+|...... ...++||+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~---~~~~~fD~ 166 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR---KFKNEFDV 166 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG---GCSSCEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh---hCCCCceE
Confidence 4579999999999999999876 457999999999 99999998864 222 2568999887644221 13468999
Q ss_pred EEEcccccCCc-----chHHHHHHHHHHhcCCCceEEE
Q 046623 128 VIMSDVFYDPE-----EMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 128 Iv~~~~~~~~~-----~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|+++.+..... ...++++.+.++|+|||.+++.
T Consensus 167 Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 167 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 99854322011 2378999999999999944443
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=96.93 Aligned_cols=94 Identities=10% Similarity=-0.037 Sum_probs=70.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-----CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCc
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-----GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-----~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
++.+|||+|||+|..+..+++. +..+|+++|+++ +++.++. ...+++++.+|..+...-......+||
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~------~~~~v~~~~gD~~~~~~l~~~~~~~fD 154 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCSDLTTFEHLREMAHP 154 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc------cCCceEEEECcchhHHHHHhhccCCCC
Confidence 4679999999999999999865 346999999999 8877761 125699999998764100011223799
Q ss_pred EEEEcccccCCcchHHHHHHHHH-HhcCCC
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKR-VCGTGR 155 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~-lL~~gG 155 (218)
+|++... + .....++..+.+ +|+|||
T Consensus 155 ~I~~d~~-~--~~~~~~l~~~~r~~LkpGG 181 (236)
T 2bm8_A 155 LIFIDNA-H--ANTFNIMKWAVDHLLEEGD 181 (236)
T ss_dssp EEEEESS-C--SSHHHHHHHHHHHTCCTTC
T ss_pred EEEECCc-h--HhHHHHHHHHHHhhCCCCC
Confidence 9998654 2 467889999997 999999
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-12 Score=109.37 Aligned_cols=103 Identities=12% Similarity=0.050 Sum_probs=80.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCc-eEEEEeecCCCCccccccCCCCcEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGR-VEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
++.+|||++||+|.+++.+++. |+.+|+++|+++ +++.+++|++.|++.++ ++++.+|..+..... ..++||+|
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~--~~~~fD~V 129 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKE--WGFGFDYV 129 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSC--CSSCEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHh--hCCCCcEE
Confidence 4679999999999999999874 446899999999 99999999999998776 889887764321100 23579999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
++++ + ....++++.+.++|++|| ++++.+
T Consensus 130 ~lDP-~---g~~~~~l~~a~~~Lk~gG-ll~~t~ 158 (392)
T 3axs_A 130 DLDP-F---GTPVPFIESVALSMKRGG-ILSLTA 158 (392)
T ss_dssp EECC-S---SCCHHHHHHHHHHEEEEE-EEEEEE
T ss_pred EECC-C---cCHHHHHHHHHHHhCCCC-EEEEEe
Confidence 9965 2 234679999999999999 444433
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.7e-11 Score=89.80 Aligned_cols=133 Identities=15% Similarity=0.054 Sum_probs=81.8
Q ss_pred HHHHHHHHhcCC-CCCCCeEEEECCCCCHHHHHHHHh-CC---------CeEEEecCcc-hHHHHHHHHHHhCCCCceEE
Q 046623 39 ALILAQFISTHF-DFQNKSVLELGAGAGLPGLTAARL-GA---------TRVVLTDVKP-LLPGLINNVEANGLGGRVEV 106 (218)
Q Consensus 39 ~~~l~~~l~~~~-~~~~~~vLDlG~G~G~~~~~l~~~-~~---------~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~ 106 (218)
...+.+...... ..++.+|||+|||+|.++..+++. +. .+|+++|+++ +. . .++.+
T Consensus 7 ~~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----------~-~~~~~ 74 (196)
T 2nyu_A 7 AFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----------L-EGATF 74 (196)
T ss_dssp HHHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----------C-TTCEE
T ss_pred HHHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-----------C-CCCeE
Confidence 344555444322 246789999999999999999866 53 6899999998 41 1 23777
Q ss_pred E-EeecCCCCccc----cccCCCCcEEEEcccccCC----cch-------HHHHHHHHHHhcCCCceEEEEEeeccCChH
Q 046623 107 R-ELVWGSDDLSQ----LSELGEFDMVIMSDVFYDP----EEM-------VGLGKTLKRVCGTGRHTVVWAVSEVRTRTG 170 (218)
Q Consensus 107 ~-~~d~~~~~~~~----~~~~~~~D~Iv~~~~~~~~----~~~-------~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~ 170 (218)
. .+|+....... ..+.++||+|+++.+++.. .+. ..+++.+.++|+|||.+++.. .......
T Consensus 75 ~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~--~~~~~~~ 152 (196)
T 2nyu_A 75 LCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT--WAGSQSR 152 (196)
T ss_dssp ECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE--CCSGGGH
T ss_pred EEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe--cCCccHH
Confidence 7 77765432110 0123589999996644321 111 478899999999999444332 2223344
Q ss_pred HHHHHHHHhCCcEEEEE
Q 046623 171 DCLHELIMSQGFRVIEL 187 (218)
Q Consensus 171 ~~~~~~~~~~gf~~~~~ 187 (218)
+....+ .. .|....+
T Consensus 153 ~~~~~l-~~-~f~~v~~ 167 (196)
T 2nyu_A 153 RLQRRL-TE-EFQNVRI 167 (196)
T ss_dssp HHHHHH-HH-HEEEEEE
T ss_pred HHHHHH-HH-HhcceEE
Confidence 444444 43 3554443
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=9.1e-12 Score=98.75 Aligned_cols=129 Identities=10% Similarity=0.036 Sum_probs=95.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
...+|||||||+|.+++.++.. +..+|+++|+++ +++.++.|+..+++. ..+...|..... +.+++|++++
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~-----p~~~~DvaL~ 204 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDR-----LDEPADVTLL 204 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSC-----CCSCCSEEEE
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccC-----CCCCcchHHH
Confidence 3669999999999999998654 567999999999 999999999999876 677777765544 5688999999
Q ss_pred cccccCCcc--hHHHHHHHHHHhcCCCceEEEEEee--c--c-----CChHHHHHHHHHhCCcEEEEEEccC
Q 046623 131 SDVFYDPEE--MVGLGKTLKRVCGTGRHTVVWAVSE--V--R-----TRTGDCLHELIMSQGFRVIELTCQL 191 (218)
Q Consensus 131 ~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~~~~~--~--~-----~~~~~~~~~~~~~~gf~~~~~~~~~ 191 (218)
+-.+++.++ ....+ .+...|+++| +++..+. . + ..-.+.++..+.+.|+.+.++.+..
T Consensus 205 lkti~~Le~q~kg~g~-~ll~aL~~~~--vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~~~n 273 (281)
T 3lcv_B 205 LKTLPCLETQQRGSGW-EVIDIVNSPN--IVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLEIGN 273 (281)
T ss_dssp TTCHHHHHHHSTTHHH-HHHHHSSCSE--EEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred HHHHHHhhhhhhHHHH-HHHHHhCCCC--EEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeeeecC
Confidence 988877533 23455 7888999998 4444433 0 1 1133445554577888877775543
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.2e-12 Score=112.52 Aligned_cols=104 Identities=26% Similarity=0.193 Sum_probs=80.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
.+.+|||+|||.|.++..+|+.|+ +|+|+|.++ +++.|+..+...+.. ++++..++.++... ....++||+|++.
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~--~~~~~~fD~v~~~ 141 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIA--ALEEGEFDLAIGL 141 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHH--HCCTTSCSEEEEE
T ss_pred CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhh--hccCCCccEEEEC
Confidence 467999999999999999999987 899999999 999999998877643 38888877755421 0145689999999
Q ss_pred ccccCCcchHHH--HHHHHHHhcCCCceEEE
Q 046623 132 DVFYDPEEMVGL--GKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 132 ~~~~~~~~~~~~--l~~~~~lL~~gG~~~i~ 160 (218)
.+++|..+...+ +..+.+.|+++|..+++
T Consensus 142 e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~ 172 (569)
T 4azs_A 142 SVFHHIVHLHGIDEVKRLLSRLADVTQAVIL 172 (569)
T ss_dssp SCHHHHHHHHCHHHHHHHHHHHHHHSSEEEE
T ss_pred cchhcCCCHHHHHHHHHHHHHhccccceeeE
Confidence 999987655433 33456667787754444
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-11 Score=103.46 Aligned_cols=101 Identities=18% Similarity=0.088 Sum_probs=79.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHh---------------CCCCceEEEEeecCCCC
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEAN---------------GLGGRVEVRELVWGSDD 115 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~---------------~~~~~~~~~~~d~~~~~ 115 (218)
++.+|||+|||+|..++.+++. +..+|+++|+++ +++.+++|++.+ ++.+ ++++.+|.....
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHHHH
Confidence 5779999999999999999876 666899999999 999999999999 7654 888887765432
Q ss_pred ccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 116 LSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 116 ~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
.. ..++||+|+++ |+. ...++++.+.+++++|| ++++.+
T Consensus 126 ~~---~~~~fD~I~lD-P~~---~~~~~l~~a~~~lk~gG-~l~vt~ 164 (378)
T 2dul_A 126 AE---RHRYFHFIDLD-PFG---SPMEFLDTALRSAKRRG-ILGVTA 164 (378)
T ss_dssp HH---STTCEEEEEEC-CSS---CCHHHHHHHHHHEEEEE-EEEEEE
T ss_pred Hh---ccCCCCEEEeC-CCC---CHHHHHHHHHHhcCCCC-EEEEEe
Confidence 10 13579999974 443 24789999999999999 344433
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=96.72 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=75.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHH-hCC------CeEEEecCcc-hHHHHHHHHHHhCC----CCceEEEEeecCCCCcccc
Q 046623 52 FQNKSVLELGAGAGLPGLTAAR-LGA------TRVVLTDVKP-LLPGLINNVEANGL----GGRVEVRELVWGSDDLSQL 119 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~-~~~------~~v~~~D~~~-~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~ 119 (218)
.++.+|||+|||+|..+..+++ .+. .+|+++|+++ +++.+++++...+. ..++.+..+|......
T Consensus 83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--- 159 (227)
T 1r18_A 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP--- 159 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG---
T ss_pred CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCC---
Confidence 5678999999999999998876 342 4899999999 99999999877541 1358899888765321
Q ss_pred ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 120 SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
..++||+|++..++++. .+.+.++|+|||.+++.
T Consensus 160 -~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lvi~ 193 (227)
T 1r18_A 160 -PNAPYNAIHVGAAAPDT------PTELINQLASGGRLIVP 193 (227)
T ss_dssp -GGCSEEEEEECSCBSSC------CHHHHHTEEEEEEEEEE
T ss_pred -cCCCccEEEECCchHHH------HHHHHHHhcCCCEEEEE
Confidence 33689999998877653 37788999999944433
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.6e-11 Score=97.01 Aligned_cols=88 Identities=20% Similarity=0.234 Sum_probs=69.1
Q ss_pred HHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccc
Q 046623 42 LAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLS 120 (218)
Q Consensus 42 l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (218)
+...+......++.+|||+|||+|.++..+++.+. +|+++|+++ +++.+++++...+...+++++.+|+.+...
T Consensus 17 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~---- 91 (285)
T 1zq9_A 17 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL---- 91 (285)
T ss_dssp HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC----
T ss_pred HHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc----
Confidence 33333333345678999999999999999988865 999999999 999999998766554568999999876543
Q ss_pred cCCCCcEEEEcccccC
Q 046623 121 ELGEFDMVIMSDVFYD 136 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~ 136 (218)
..||+|+++.|++.
T Consensus 92 --~~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 92 --PFFDTCVANLPYQI 105 (285)
T ss_dssp --CCCSEEEEECCGGG
T ss_pred --hhhcEEEEecCccc
Confidence 37999999877654
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-11 Score=98.46 Aligned_cols=104 Identities=13% Similarity=0.064 Sum_probs=77.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHh--CC-CCceEEEEeecCCCCccccccCCCCcE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEAN--GL-GGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
++.+|||+|||+|.++..+++. +..+++++|+++ +++.+++++... +. .++++++.+|...... ...++||+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~---~~~~~fD~ 151 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA---KSENQYDV 151 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH---TCCSCEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh---hCCCCeeE
Confidence 5679999999999999999876 557999999999 999999988542 23 3578999887643211 13468999
Q ss_pred EEEcccccCCc----chHHHHHHHHHHhcCCCceEE
Q 046623 128 VIMSDVFYDPE----EMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 128 Iv~~~~~~~~~----~~~~~l~~~~~lL~~gG~~~i 159 (218)
|+++.+..... ...++++.+.++|+|||.+++
T Consensus 152 Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~ 187 (275)
T 1iy9_A 152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVA 187 (275)
T ss_dssp EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEE
T ss_pred EEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 99954432111 136899999999999993333
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.8e-11 Score=96.99 Aligned_cols=93 Identities=16% Similarity=0.095 Sum_probs=72.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|.++..+++. +..+++++|+++ +++.++++. .++.+...|+.+... ..++||+|+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~----~~~~fD~v~ 153 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPF----SDTSMDAII 153 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSB----CTTCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCC----CCCceeEEE
Confidence 46779999999999999998876 245999999999 999887763 347888888766543 457899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
++.+ ...++.+.++|+|||.+++..
T Consensus 154 ~~~~-------~~~l~~~~~~L~pgG~l~~~~ 178 (269)
T 1p91_A 154 RIYA-------PCKAEELARVVKPGGWVITAT 178 (269)
T ss_dssp EESC-------CCCHHHHHHHEEEEEEEEEEE
T ss_pred EeCC-------hhhHHHHHHhcCCCcEEEEEE
Confidence 8655 235788999999999444443
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=4.9e-11 Score=99.53 Aligned_cols=121 Identities=12% Similarity=0.182 Sum_probs=89.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.+..+|||+|||+|..+..+++. +..+++++|+ + +++.+++. .+++++.+|+.+ .. + .||+|+
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~----p--~~D~v~ 251 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-------NNLTYVGGDMFT-SI----P--NADAVL 251 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-------TTEEEEECCTTT-CC----C--CCSEEE
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-------CCcEEEeccccC-CC----C--CccEEE
Confidence 35679999999999999999765 4458999999 7 87776542 348999988865 22 2 399999
Q ss_pred EcccccCCcchH--HHHHHHHHHhcC---CCceEEEEEeec--c----------------------CChHHHHHHHHHhC
Q 046623 130 MSDVFYDPEEMV--GLGKTLKRVCGT---GRHTVVWAVSEV--R----------------------TRTGDCLHELIMSQ 180 (218)
Q Consensus 130 ~~~~~~~~~~~~--~~l~~~~~lL~~---gG~~~i~~~~~~--~----------------------~~~~~~~~~~~~~~ 180 (218)
+..++|+..+.. .+++++.++|+| ||.+++.-.... . ....+.+..++++.
T Consensus 252 ~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~a 331 (352)
T 1fp2_A 252 LKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEA 331 (352)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHT
T ss_pred eehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHC
Confidence 999999887766 999999999999 995554422111 0 11234455666899
Q ss_pred CcEEEEE
Q 046623 181 GFRVIEL 187 (218)
Q Consensus 181 gf~~~~~ 187 (218)
||...++
T Consensus 332 Gf~~~~~ 338 (352)
T 1fp2_A 332 GFQHYKI 338 (352)
T ss_dssp TCCEEEE
T ss_pred CCCeeEE
Confidence 9988776
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.5e-11 Score=99.78 Aligned_cols=122 Identities=16% Similarity=0.072 Sum_probs=89.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.+..+|||+|||+|..+..+++. +..+++++|++.+++.+++. .+++++.+|+.+ .. +.+ |+|++
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~----p~~--D~v~~ 265 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQF-------PGVTHVGGDMFK-EV----PSG--DTILM 265 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCC-------TTEEEEECCTTT-CC----CCC--SEEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhc-------CCeEEEeCCcCC-CC----CCC--CEEEe
Confidence 45679999999999999998754 45689999993376665432 469999999876 32 333 99999
Q ss_pred cccccCCc--chHHHHHHHHHHhcCCCceEEEEEee--------------------------ccCChHHHHHHHHHhCCc
Q 046623 131 SDVFYDPE--EMVGLGKTLKRVCGTGRHTVVWAVSE--------------------------VRTRTGDCLHELIMSQGF 182 (218)
Q Consensus 131 ~~~~~~~~--~~~~~l~~~~~lL~~gG~~~i~~~~~--------------------------~~~~~~~~~~~~~~~~gf 182 (218)
..++|+.. +...+++++++.|+|||.+++.-... .+....+.+..++++.||
T Consensus 266 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF 345 (364)
T 3p9c_A 266 KWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGF 345 (364)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTC
T ss_pred hHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCC
Confidence 99999764 45689999999999999555542111 011234456666799999
Q ss_pred EEEEE
Q 046623 183 RVIEL 187 (218)
Q Consensus 183 ~~~~~ 187 (218)
...++
T Consensus 346 ~~v~~ 350 (364)
T 3p9c_A 346 TGVKS 350 (364)
T ss_dssp CEEEE
T ss_pred ceEEE
Confidence 98887
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.9e-11 Score=99.81 Aligned_cols=121 Identities=12% Similarity=0.070 Sum_probs=89.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|..+..+++.. ..+++++|+ + +++.+++. .+++++.+|+.+ .. +. ||+|+
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~----~~--~D~v~ 272 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-------SGIEHVGGDMFA-SV----PQ--GDAMI 272 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CC----CC--EEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-------CCCEEEeCCccc-CC----CC--CCEEE
Confidence 456799999999999999997664 357889999 6 77766531 348999998876 22 22 99999
Q ss_pred EcccccCCcchH--HHHHHHHHHhcCCCceEEEEEeec-------------------------cCChHHHHHHHHHhCCc
Q 046623 130 MSDVFYDPEEMV--GLGKTLKRVCGTGRHTVVWAVSEV-------------------------RTRTGDCLHELIMSQGF 182 (218)
Q Consensus 130 ~~~~~~~~~~~~--~~l~~~~~lL~~gG~~~i~~~~~~-------------------------~~~~~~~~~~~~~~~gf 182 (218)
++.++|+..+.. .+++.+.++|+|||.+++.-.... +....+.+..++++.||
T Consensus 273 ~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 352 (372)
T 1fp1_D 273 LKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGF 352 (372)
T ss_dssp EESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTC
T ss_pred EecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCC
Confidence 999999887776 999999999999995555421111 11123445566688999
Q ss_pred EEEEE
Q 046623 183 RVIEL 187 (218)
Q Consensus 183 ~~~~~ 187 (218)
...++
T Consensus 353 ~~~~~ 357 (372)
T 1fp1_D 353 SKFQV 357 (372)
T ss_dssp SEEEE
T ss_pred ceEEE
Confidence 88776
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-10 Score=90.89 Aligned_cols=100 Identities=13% Similarity=0.024 Sum_probs=78.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.+++.+. +..+|+++|+++ +++.++.++..++.. ..+...|..... +.+++|+|++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~--~~~~v~D~~~~~-----~~~~~DvvLl 174 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWD--FTFALQDVLCAP-----PAEAGDLALI 174 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCE--EEEEECCTTTSC-----CCCBCSEEEE
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeecccCC-----CCCCcchHHH
Confidence 457799999999999999887 667999999999 999999999888843 788888876655 4568999999
Q ss_pred cccccCCc--chHHHHHHHHHHhcCCCceEEEEEe
Q 046623 131 SDVFYDPE--EMVGLGKTLKRVCGTGRHTVVWAVS 163 (218)
Q Consensus 131 ~~~~~~~~--~~~~~l~~~~~lL~~gG~~~i~~~~ 163 (218)
...+++.+ .....+ .+...|++++ +++..+
T Consensus 175 lk~lh~LE~q~~~~~~-~ll~aL~~~~--vvVsfP 206 (253)
T 3frh_A 175 FKLLPLLEREQAGSAM-ALLQSLNTPR--MAVSFP 206 (253)
T ss_dssp ESCHHHHHHHSTTHHH-HHHHHCBCSE--EEEEEE
T ss_pred HHHHHHhhhhchhhHH-HHHHHhcCCC--EEEEcC
Confidence 87776542 223344 7777999988 444443
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-11 Score=99.96 Aligned_cols=103 Identities=13% Similarity=0.023 Sum_probs=76.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh--CC--------CCceEEEEeecCCCCcccccc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN--GL--------GGRVEVRELVWGSDDLSQLSE 121 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~--~~--------~~~~~~~~~d~~~~~~~~~~~ 121 (218)
++.+|||+|||+|..+..+++.+..+++++|+++ +++.+++++ .. ++ ..+++++.+|..+... .
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~----~ 149 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIK----N 149 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHH----H
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhc----c
Confidence 5679999999999999999876667999999999 999999987 33 21 3568888877543211 1
Q ss_pred CCCCcEEEEcccccCC--cc--hHHHHHHHHHHhcCCCceEEE
Q 046623 122 LGEFDMVIMSDVFYDP--EE--MVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 122 ~~~~D~Iv~~~~~~~~--~~--~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.++||+|+++.+.... .. ..++++.+.++|+|||.+++.
T Consensus 150 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 150 NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 4689999996553211 11 378899999999999944444
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.4e-11 Score=99.99 Aligned_cols=107 Identities=15% Similarity=0.057 Sum_probs=79.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHH-hC--C-CCceEEEEeecCCCCccccccCCCCc
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEA-NG--L-GGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~-~~--~-~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
++.+|||+|||+|..+..+++. +..+++++|+++ +++.+++++.. ++ . ..+++++.+|..+... ...++||
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~---~~~~~fD 153 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE---RTEERYD 153 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH---HCCCCEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHH---hcCCCcc
Confidence 4679999999999999999876 456999999999 99999998864 11 1 3568999887654311 1356899
Q ss_pred EEEEcccccC---Cc--c--hHHHHHHHHHHhcCCCceEEEEE
Q 046623 127 MVIMSDVFYD---PE--E--MVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 127 ~Iv~~~~~~~---~~--~--~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
+|+++.+.+. .. . ..++++.+.++|+|||.+++...
T Consensus 154 ~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 9999655432 11 1 47899999999999995555443
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-11 Score=99.12 Aligned_cols=100 Identities=17% Similarity=0.200 Sum_probs=74.5
Q ss_pred CCCeEEEECCCCCH----HHHHHHHh-C----CCeEEEecCcc-hHHHHHHHHHH-----------------------hC
Q 046623 53 QNKSVLELGAGAGL----PGLTAARL-G----ATRVVLTDVKP-LLPGLINNVEA-----------------------NG 99 (218)
Q Consensus 53 ~~~~vLDlG~G~G~----~~~~l~~~-~----~~~v~~~D~~~-~~~~a~~~~~~-----------------------~~ 99 (218)
++.+|||+|||+|. +++.+++. + ..+|+++|+|+ +++.|+++... .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35699999999997 56666544 4 23899999999 99999987410 00
Q ss_pred -------CCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcc--hHHHHHHHHHHhcCCC
Q 046623 100 -------LGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEE--MVGLGKTLKRVCGTGR 155 (218)
Q Consensus 100 -------~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~--~~~~l~~~~~lL~~gG 155 (218)
+..++.|...|+.+... ...++||+|+|.+++.+.+. ..++++.+.+.|+|||
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~---~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG 246 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQY---NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDG 246 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSC---CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCC---CcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCc
Confidence 01358899988876432 02468999999998866543 4889999999999999
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-11 Score=98.29 Aligned_cols=117 Identities=15% Similarity=0.016 Sum_probs=76.5
Q ss_pred cchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHH-HHhCCCCceEEE--Eeec
Q 046623 35 LWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNV-EANGLGGRVEVR--ELVW 111 (218)
Q Consensus 35 ~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~-~~~~~~~~~~~~--~~d~ 111 (218)
.-.++..+...+......++.+|||+|||+|.++..+++. .+|+++|++++...++.+. .......++.++ .+|+
T Consensus 56 ~sR~a~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~ 133 (265)
T 2oxt_A 56 VSRGTAKLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDI 133 (265)
T ss_dssp SSTHHHHHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCT
T ss_pred cchHHHHHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCH
Confidence 3356666777666533356789999999999999999877 4899999998322221110 000000147777 7777
Q ss_pred CCCCccccccCCCCcEEEEcccccCCcch-------HHHHHHHHHHhcCCC--ceEEE
Q 046623 112 GSDDLSQLSELGEFDMVIMSDVFYDPEEM-------VGLGKTLKRVCGTGR--HTVVW 160 (218)
Q Consensus 112 ~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~-------~~~l~~~~~lL~~gG--~~~i~ 160 (218)
... +.++||+|+++.. +..... ..+++.+.++|+||| .+++-
T Consensus 134 ~~l------~~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~k 184 (265)
T 2oxt_A 134 HTL------PVERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVK 184 (265)
T ss_dssp TTS------CCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred hHC------CCCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 653 3468999999655 322211 137888999999999 55553
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.4e-11 Score=96.82 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=61.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..+++.+. +|+++|+++ +++.+++++..++. .+++++.+|+.+.. .++||+|++
T Consensus 41 ~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~------~~~~D~Vv~ 112 (299)
T 2h1r_A 41 KSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTV------FPKFDVCTA 112 (299)
T ss_dssp CTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSC------CCCCSEEEE
T ss_pred CCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCC------cccCCEEEE
Confidence 5678999999999999999987754 999999999 99999999987766 45899998887653 247999999
Q ss_pred cccccC
Q 046623 131 SDVFYD 136 (218)
Q Consensus 131 ~~~~~~ 136 (218)
+.|++.
T Consensus 113 n~py~~ 118 (299)
T 2h1r_A 113 NIPYKI 118 (299)
T ss_dssp ECCGGG
T ss_pred cCCccc
Confidence 877653
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.19 E-value=5.5e-11 Score=98.61 Aligned_cols=102 Identities=18% Similarity=0.119 Sum_probs=76.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHh--CC-CCceEEEEeecCCCCccccccCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEAN--GL-GGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
.++.+|||||||+|..+..+++.. ..+|+++|+++ +++.+++++... ++ ..+++++.+|+.+.... ...++||
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~--~~~~~fD 196 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN--AAEGSYD 196 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT--SCTTCEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHh--ccCCCcc
Confidence 356799999999999999998663 46999999999 999999998653 33 24689998886543110 0246899
Q ss_pred EEEEccc--ccCCcc--hHHHHHHHHHHhcCCC
Q 046623 127 MVIMSDV--FYDPEE--MVGLGKTLKRVCGTGR 155 (218)
Q Consensus 127 ~Iv~~~~--~~~~~~--~~~~l~~~~~lL~~gG 155 (218)
+|+++.+ .+.... ...+++.+.++|+|||
T Consensus 197 lIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG 229 (334)
T 1xj5_A 197 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGG 229 (334)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEE
T ss_pred EEEECCCCccCcchhhhHHHHHHHHHHhcCCCc
Confidence 9998543 211111 4789999999999999
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-11 Score=99.21 Aligned_cols=105 Identities=11% Similarity=-0.010 Sum_probs=76.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHH--hCC-CCceEEEEeecCCCCccccccCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEA--NGL-GGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~--~~~-~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
.++.+|||+|||+|..+..+++.+ ..+++++|+++ +++.+++++.. .++ ..+++++.+|..+... ...++||
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~---~~~~~fD 170 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK---QNQDAFD 170 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH---TCSSCEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHh---hCCCCce
Confidence 356799999999999999998764 46999999999 99999999865 233 3568999877643211 1346899
Q ss_pred EEEEcccccCC----cchHHHHHHHHHHhcCCCceEE
Q 046623 127 MVIMSDVFYDP----EEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 127 ~Iv~~~~~~~~----~~~~~~l~~~~~lL~~gG~~~i 159 (218)
+|+++.+.... ....++++.+.++|+|||.+++
T Consensus 171 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 207 (304)
T 2o07_A 171 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCC 207 (304)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEE
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEE
Confidence 99985543211 1236789999999999993333
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.3e-10 Score=93.85 Aligned_cols=142 Identities=13% Similarity=0.160 Sum_probs=92.7
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
+++.+..++. ..++.+|||+|||+|..+..++.. +..+|+++|+++ +++.+++|++.+++. ++.++..|+...
T Consensus 90 ~s~l~~~~l~---~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~~ 165 (309)
T 2b9e_A 90 ASCLPAMLLD---PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAV 165 (309)
T ss_dssp GGGHHHHHHC---CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGS
T ss_pred HHHHHHHHhC---CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHhc
Confidence 3344444443 246789999999999999998753 346999999999 999999999999875 488998887654
Q ss_pred CccccccCCCCcEEEEcccccCC-----------------cch-------HHHHHHHHHHhcCCCceEEEEE-eeccCCh
Q 046623 115 DLSQLSELGEFDMVIMSDVFYDP-----------------EEM-------VGLGKTLKRVCGTGRHTVVWAV-SEVRTRT 169 (218)
Q Consensus 115 ~~~~~~~~~~~D~Iv~~~~~~~~-----------------~~~-------~~~l~~~~~lL~~gG~~~i~~~-~~~~~~~ 169 (218)
.... ....+||.|++++|+... ++. .++++.+.++++ || .+++.+ +......
T Consensus 166 ~~~~-~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG-~lvYsTCs~~~~En 242 (309)
T 2b9e_A 166 SPSD-PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQ-RLVYSTCSLCQEEN 242 (309)
T ss_dssp CTTC-GGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CC-EEEEEESCCCGGGT
T ss_pred Cccc-cccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CC-EEEEECCCCChHHh
Confidence 3210 012579999998776321 111 235666666665 77 444443 3333344
Q ss_pred HHHHHHHHHhC-C-cEEEE
Q 046623 170 GDCLHELIMSQ-G-FRVIE 186 (218)
Q Consensus 170 ~~~~~~~~~~~-g-f~~~~ 186 (218)
++.+..++.++ + |....
T Consensus 243 e~~v~~~l~~~~~~~~~~~ 261 (309)
T 2b9e_A 243 EDVVRDALQQNPGAFRLAP 261 (309)
T ss_dssp HHHHHHHHTTSTTTEEECC
T ss_pred HHHHHHHHHhCCCcEEEec
Confidence 55666665554 3 65543
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.5e-11 Score=97.15 Aligned_cols=106 Identities=17% Similarity=0.037 Sum_probs=77.5
Q ss_pred CCeEEEECCCCCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 54 NKSVLELGAGAGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
..+|||||||+|.++..+++ .+..+++++|+++ +++.+++++.... ..+++++.+|....... ...++||+|+++
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~--~~~~~fDvIi~D 166 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAES--FTPASRDVIIRD 166 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHT--CCTTCEEEEEEC
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhh--ccCCCCCEEEEC
Confidence 45999999999999999987 4555999999999 9999999875432 35689998876543210 134689999985
Q ss_pred ccccC--Cc--chHHHHHHHHHHhcCCCceEEEEE
Q 046623 132 DVFYD--PE--EMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 132 ~~~~~--~~--~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
..... .. ...++++.+.++|+|||.+++...
T Consensus 167 ~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 167 VFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp CSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 32221 11 137899999999999995544443
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.5e-11 Score=99.86 Aligned_cols=100 Identities=14% Similarity=0.073 Sum_probs=72.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHh--CC-CCceEEEEeecCCCCccccccCCCCcE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEAN--GL-GGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
++.+|||||||+|..+..+++. +..+++++|+++ +++.+++++... +. ..+++++.+|...... ...++||+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~---~~~~~fD~ 184 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK---NHKNEFDV 184 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH---HCTTCEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHH---hcCCCceE
Confidence 4579999999999999999866 346999999999 999999988653 22 3568888877654211 13568999
Q ss_pred EEEcccccCC--cc-h-HHHHHHHHHHhcCCC
Q 046623 128 VIMSDVFYDP--EE-M-VGLGKTLKRVCGTGR 155 (218)
Q Consensus 128 Iv~~~~~~~~--~~-~-~~~l~~~~~lL~~gG 155 (218)
|+++.+.... .. . .++++.+.++|+|||
T Consensus 185 Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG 216 (314)
T 2b2c_A 185 IITDSSDPVGPAESLFGQSYYELLRDALKEDG 216 (314)
T ss_dssp EEECCC-------------HHHHHHHHEEEEE
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHhhcCCCe
Confidence 9985432211 11 1 789999999999999
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.4e-10 Score=91.52 Aligned_cols=88 Identities=18% Similarity=0.151 Sum_probs=69.3
Q ss_pred HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc
Q 046623 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL 119 (218)
Q Consensus 41 ~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (218)
.+...+......++.+|||+|||+|.++..+++.+ .+|+++|+++ +++.+++++... .+++++.+|+.+...
T Consensus 38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~~~~--- 110 (295)
T 3gru_A 38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALKVDL--- 110 (295)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTTSCG---
T ss_pred HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhhCCc---
Confidence 33334333334567899999999999999998885 4999999999 999999998732 459999999887654
Q ss_pred ccCCCCcEEEEcccccC
Q 046623 120 SELGEFDMVIMSDVFYD 136 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~~~ 136 (218)
+..+||.|++|.|++.
T Consensus 111 -~~~~fD~Iv~NlPy~i 126 (295)
T 3gru_A 111 -NKLDFNKVVANLPYQI 126 (295)
T ss_dssp -GGSCCSEEEEECCGGG
T ss_pred -ccCCccEEEEeCcccc
Confidence 4457999999877653
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=7.7e-11 Score=95.62 Aligned_cols=103 Identities=12% Similarity=0.028 Sum_probs=76.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhC--C-CCceEEEEeecCCCCccccccCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANG--L-GGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
.++.+|||+|||+|..+..+++.. ..+++++|+++ +++.+++++...+ . ..+++++.+|..+.... ..++||
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~---~~~~fD 153 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN---VTNTYD 153 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH---CCSCEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh---CCCCce
Confidence 356799999999999999998663 46999999999 9999999876432 1 25688888776543210 256899
Q ss_pred EEEEcccccC--Ccch--HHHHHHHHHHhcCCCce
Q 046623 127 MVIMSDVFYD--PEEM--VGLGKTLKRVCGTGRHT 157 (218)
Q Consensus 127 ~Iv~~~~~~~--~~~~--~~~l~~~~~lL~~gG~~ 157 (218)
+|+++.+... .... .++++.+.++|+|||.+
T Consensus 154 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~l 188 (283)
T 2i7c_A 154 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYC 188 (283)
T ss_dssp EEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEE
T ss_pred EEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEE
Confidence 9998543221 1122 68999999999999933
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3e-10 Score=94.91 Aligned_cols=121 Identities=16% Similarity=0.143 Sum_probs=88.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
+..+|||+|||+|..+..+++.. ..+++++|++.+++.+++ . .+++++.+|+.+ .. + .||+|+++
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~-~~v~~~~~d~~~-~~----~--~~D~v~~~ 258 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG------N-ENLNFVGGDMFK-SI----P--SADAVLLK 258 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC------C-SSEEEEECCTTT-CC----C--CCSEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc------C-CCcEEEeCccCC-CC----C--CceEEEEc
Confidence 45799999999999999997663 458999999337665543 1 348999988876 32 2 49999999
Q ss_pred ccccCCcchH--HHHHHHHHHhcC---CCceEEEEEeec--c-----------------------CChHHHHHHHHHhCC
Q 046623 132 DVFYDPEEMV--GLGKTLKRVCGT---GRHTVVWAVSEV--R-----------------------TRTGDCLHELIMSQG 181 (218)
Q Consensus 132 ~~~~~~~~~~--~~l~~~~~lL~~---gG~~~i~~~~~~--~-----------------------~~~~~~~~~~~~~~g 181 (218)
.++|+..+.. .+++++.+.|+| ||.+++.-.... . ....+.+..++++.|
T Consensus 259 ~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 338 (358)
T 1zg3_A 259 WVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAG 338 (358)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTT
T ss_pred ccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcC
Confidence 9999887766 999999999999 995555422111 0 113344556668899
Q ss_pred cEEEEE
Q 046623 182 FRVIEL 187 (218)
Q Consensus 182 f~~~~~ 187 (218)
|...++
T Consensus 339 f~~~~~ 344 (358)
T 1zg3_A 339 FSSYKI 344 (358)
T ss_dssp CCEEEE
T ss_pred CCeeEE
Confidence 998876
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.11 E-value=5e-10 Score=98.52 Aligned_cols=110 Identities=14% Similarity=0.042 Sum_probs=82.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh----C---------------CCeEEEecCcc-hHHHHHHHHHHhCCCC----ceEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL----G---------------ATRVVLTDVKP-LLPGLINNVEANGLGG----RVEVR 107 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~----~---------------~~~v~~~D~~~-~~~~a~~~~~~~~~~~----~~~~~ 107 (218)
.++.+|+|.+||+|.+.+.+++. + ..+++|+|+++ ++..|+.|+...++.. ...+.
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence 45679999999999998887543 1 13799999999 9999999998888754 26777
Q ss_pred EeecCCCCccccccCCCCcEEEEcccccCCcc--------------hHHHHHHHHHHhcCCCceEEEEEee
Q 046623 108 ELVWGSDDLSQLSELGEFDMVIMSDVFYDPEE--------------MVGLGKTLKRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 108 ~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~--------------~~~~l~~~~~lL~~gG~~~i~~~~~ 164 (218)
.+|...... ....+||+|++|+|+..... ...++..+.++|+|||++.+++...
T Consensus 248 ~gDtL~~~~---~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~ 315 (541)
T 2ar0_A 248 LGNTLGSDG---ENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 315 (541)
T ss_dssp ESCTTSHHH---HTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred eCCCccccc---ccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence 777544321 13468999999999865322 2368899999999999777776544
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-10 Score=94.47 Aligned_cols=111 Identities=13% Similarity=0.006 Sum_probs=71.2
Q ss_pred hhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecC----cc-hHHHHHHHHHHhCCCCceEEEEe-e
Q 046623 37 DSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDV----KP-LLPGLINNVEANGLGGRVEVREL-V 110 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~----~~-~~~~a~~~~~~~~~~~~~~~~~~-d 110 (218)
.+...|...+......++.+|||+|||+|.++..+++. .+|+++|+ ++ .+..+. ....+ .+++.++.+ |
T Consensus 66 R~a~KL~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D 140 (305)
T 2p41_A 66 RGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVD 140 (305)
T ss_dssp THHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCC
T ss_pred cHHHHHHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccc
Confidence 45566666665522346789999999999999999877 38999998 44 332111 00111 134788776 6
Q ss_pred cCCCCccccccCCCCcEEEEccccc--C-CcchH---HHHHHHHHHhcCCCceE
Q 046623 111 WGSDDLSQLSELGEFDMVIMSDVFY--D-PEEMV---GLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 111 ~~~~~~~~~~~~~~~D~Iv~~~~~~--~-~~~~~---~~l~~~~~lL~~gG~~~ 158 (218)
.... +.++||+|+++..+. + ..+.. .++..+.++|+|||.++
T Consensus 141 ~~~l------~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v 188 (305)
T 2p41_A 141 VFFI------PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFC 188 (305)
T ss_dssp TTTS------CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred cccC------CcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEE
Confidence 5543 346899999965542 1 01111 46788889999999433
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.4e-09 Score=90.96 Aligned_cols=170 Identities=13% Similarity=0.017 Sum_probs=110.6
Q ss_pred hhHHHHHHHHhcCC-CCCCCeEEEECCCCCHHHHHHHHh----CCCeEEEecCcc-hHHHHHHHHHHhCCC-CceEEEEe
Q 046623 37 DSALILAQFISTHF-DFQNKSVLELGAGAGLPGLTAARL----GATRVVLTDVKP-LLPGLINNVEANGLG-GRVEVREL 109 (218)
Q Consensus 37 ~~~~~l~~~l~~~~-~~~~~~vLDlG~G~G~~~~~l~~~----~~~~v~~~D~~~-~~~~a~~~~~~~~~~-~~~~~~~~ 109 (218)
+-...|.+++.... ..++.+|+|.+||+|.+.+.+++. +..+++|+|+++ ++..++.|+...++. ..+.+..+
T Consensus 204 ~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~g 283 (542)
T 3lkd_A 204 PVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNA 283 (542)
T ss_dssp HHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEES
T ss_pred HHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEec
Confidence 34455555554321 246779999999999998888655 245899999999 999999999998875 35788888
Q ss_pred ecCCCCccccccCCCCcEEEEcccccCCc--------c---------------hHHHHHHHHHHhc-CCCceEEEEEeec
Q 046623 110 VWGSDDLSQLSELGEFDMVIMSDVFYDPE--------E---------------MVGLGKTLKRVCG-TGRHTVVWAVSEV 165 (218)
Q Consensus 110 d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~--------~---------------~~~~l~~~~~lL~-~gG~~~i~~~~~~ 165 (218)
|.....+.. ....+||+|++|||+.... + --.++..+.+.|+ +||++.+++....
T Consensus 284 DtL~~d~p~-~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~ 362 (542)
T 3lkd_A 284 DTLDEDWPT-QEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGV 362 (542)
T ss_dssp CTTTSCSCC-SSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHH
T ss_pred ceecccccc-cccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchH
Confidence 876552111 1457899999999985311 0 0137888999999 9997777766543
Q ss_pred --cCChHHHHHHHHHhCCcEEEEE--EccCCCCCCCceeEEEecCC
Q 046623 166 --RTRTGDCLHELIMSQGFRVIEL--TCQLGGGCPEAFAVYELIPP 207 (218)
Q Consensus 166 --~~~~~~~~~~~~~~~gf~~~~~--~~~~~~~~~~~~~l~~~~~~ 207 (218)
+......++..+.+.+.-...+ |-....+...-..++-+.+.
T Consensus 363 Lf~~~~~~~iRk~Lle~~~l~~II~LP~~lF~~t~i~t~Ilvl~K~ 408 (542)
T 3lkd_A 363 LFRGNAEGTIRKALLEEGAIDTVIGLPANIFFNTSIPTTVIILKKN 408 (542)
T ss_dssp HHCCTHHHHHHHHHHHTTCEEEEEECCSSCSSSCCCCEEEEEECSS
T ss_pred hhCCchhHHHHHHHHhCCceeEEEEccccccCCCCCcEEEEEEecC
Confidence 2233344444434444332222 44333355555566666554
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-09 Score=97.02 Aligned_cols=121 Identities=16% Similarity=0.143 Sum_probs=86.5
Q ss_pred HHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhC------------------------------------------
Q 046623 39 ALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLG------------------------------------------ 75 (218)
Q Consensus 39 ~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~------------------------------------------ 75 (218)
...|+..+.. ..-.++.++||.+||+|.+.+.++..+
T Consensus 175 ~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~ 254 (703)
T 3v97_A 175 KETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAE 254 (703)
T ss_dssp CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcccc
Confidence 3445555544 222467799999999999999886542
Q ss_pred -CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC----cchHHHHHHHHH
Q 046623 76 -ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP----EEMVGLGKTLKR 149 (218)
Q Consensus 76 -~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~----~~~~~~l~~~~~ 149 (218)
..+++|+|+++ +++.|+.|+...|+.+.+++..+|+.+.... ...++||+|++|+|+... .....+...+.+
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~--~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~ 332 (703)
T 3v97_A 255 YSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNP--LPKGPYGTVLSNPPYGERLDSEPALIALHSLLGR 332 (703)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCS--CTTCCCCEEEECCCCCC---CCHHHHHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccc--cccCCCCEEEeCCCccccccchhHHHHHHHHHHH
Confidence 13799999999 9999999999999988899999988764320 012389999999998642 234555555554
Q ss_pred Hh---cCCCceEEEE
Q 046623 150 VC---GTGRHTVVWA 161 (218)
Q Consensus 150 lL---~~gG~~~i~~ 161 (218)
.+ .|||.+.+++
T Consensus 333 ~lk~~~~g~~~~ilt 347 (703)
T 3v97_A 333 IMKNQFGGWNLSLFS 347 (703)
T ss_dssp HHHHHCTTCEEEEEE
T ss_pred HHHhhCCCCeEEEEe
Confidence 44 4788665553
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=8.1e-11 Score=99.00 Aligned_cols=93 Identities=18% Similarity=0.105 Sum_probs=68.6
Q ss_pred CCCCeEEEECCC------CCHHHHHHHH-h-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-c
Q 046623 52 FQNKSVLELGAG------AGLPGLTAAR-L-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G------~G~~~~~l~~-~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-~ 120 (218)
.++.+||||||| +|..++.+++ . +..+|+++|+++ +. . ...+++++.+|..+..... + .
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~--~~~rI~fv~GDa~dlpf~~~l~~ 284 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V--DELRIRTIQGDQNDAEFLDRIAR 284 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G--CBTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h--cCCCcEEEEecccccchhhhhhc
Confidence 356799999999 6766666653 3 456999999999 72 1 1256999999987654310 0 0
Q ss_pred cCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 121 ELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
..++||+|+++. .++..+....++.+.++|||||
T Consensus 285 ~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGG 318 (419)
T 3sso_A 285 RYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGG 318 (419)
T ss_dssp HHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEE
T ss_pred ccCCccEEEECC-cccchhHHHHHHHHHHhcCCCe
Confidence 157899999854 4555678899999999999999
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.03 E-value=6.6e-10 Score=88.76 Aligned_cols=80 Identities=13% Similarity=0.098 Sum_probs=63.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..++.+|||+|||+|.++..+++.+ .+|+++|+++ +++.+++++.. ..+++++.+|+.+.........++|| |+
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~~~~~~~-vv 101 (255)
T 3tqs_A 27 PQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQFDFSSVKTDKPLR-VV 101 (255)
T ss_dssp CCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTCCGGGSCCSSCEE-EE
T ss_pred CCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhCCHHHhccCCCeE-EE
Confidence 3567899999999999999998876 4999999999 99999998865 24699999999887653322235677 88
Q ss_pred Eccccc
Q 046623 130 MSDVFY 135 (218)
Q Consensus 130 ~~~~~~ 135 (218)
+|.|++
T Consensus 102 ~NlPY~ 107 (255)
T 3tqs_A 102 GNLPYN 107 (255)
T ss_dssp EECCHH
T ss_pred ecCCcc
Confidence 877764
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-10 Score=91.91 Aligned_cols=95 Identities=13% Similarity=0.041 Sum_probs=72.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh--CC-CCceEEEEeecCCCCccccccCCCCcEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN--GL-GGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.+.+|||+|||+|..+..+++.+ .+++++|+++ +++.+++++... +. .++++++.+|.... . ++||+|
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~------~-~~fD~I 143 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD------I-KKYDLI 143 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC------C-CCEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH------H-hhCCEE
Confidence 45799999999999999887666 7999999999 999988776431 11 24688887775442 2 679999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+++. .++..+++.+.++|+|||.+++.
T Consensus 144 i~d~-----~dp~~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 144 FCLQ-----EPDIHRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp EESS-----CCCHHHHHHHHTTEEEEEEEEEE
T ss_pred EECC-----CChHHHHHHHHHhcCCCcEEEEE
Confidence 9852 23456899999999999944443
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.5e-10 Score=94.63 Aligned_cols=119 Identities=8% Similarity=-0.048 Sum_probs=82.9
Q ss_pred hhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh--CCCCceEEEEeecCC
Q 046623 37 DSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN--GLGGRVEVRELVWGS 113 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~--~~~~~~~~~~~d~~~ 113 (218)
.+...++.+..... .++.+|||+|||+|..++.+++.+. +|+++|+++ +++.++.|++.+ ++ .+++++.+|+.+
T Consensus 78 at~e~vA~~~a~~l-~~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~ 154 (410)
T 3ll7_A 78 SSGAVTSSYKSRFI-REGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKE 154 (410)
T ss_dssp SCCHHHHHHGGGGS-CTTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGG
T ss_pred cCHHHHHHHHHHhc-CCCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHH
Confidence 34555666643311 1378999999999999999988765 999999999 999999999988 77 569999988865
Q ss_pred CCccccccCCCCcEEEEcccccCC--------cchHHHHHHHHHHhcCCCceEEE
Q 046623 114 DDLSQLSELGEFDMVIMSDVFYDP--------EEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 114 ~~~~~~~~~~~~D~Iv~~~~~~~~--------~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.... ....+||+|+++++.... ++..+-+..+...|...+..+++
T Consensus 155 ~L~~--~~~~~fDvV~lDPPrr~~~~grv~~led~~P~l~~~~~~l~~~~~~~~v 207 (410)
T 3ll7_A 155 YLPL--IKTFHPDYIYVDPARRSGADKRVYAIADCEPDLIPLATELLPFCSSILA 207 (410)
T ss_dssp SHHH--HHHHCCSEEEECCEEC-----CCCCGGGEESCHHHHHHHHGGGSSEEEE
T ss_pred hhhh--ccCCCceEEEECCCCcCCCCceEEehhhcCCCHHHHHHHHHhhCCcEEE
Confidence 4210 023579999998877542 23444555566555444333444
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.3e-09 Score=85.02 Aligned_cols=86 Identities=13% Similarity=0.059 Sum_probs=63.1
Q ss_pred HHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc
Q 046623 42 LAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL 119 (218)
Q Consensus 42 l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (218)
+.+.+.. ....++.+|||+|||+|.++..++..+ .+|+++|+++ +++.+++++... .+++++.+|+.+....
T Consensus 18 ~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~~-- 91 (244)
T 1qam_A 18 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFP-- 91 (244)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCC--
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCcc--
Confidence 4444443 333567899999999999999999887 4999999999 999999887542 4689999888765431
Q ss_pred ccCCCCcEEEEccccc
Q 046623 120 SELGEFDMVIMSDVFY 135 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~~ 135 (218)
....| .|++|.|++
T Consensus 92 -~~~~~-~vv~nlPy~ 105 (244)
T 1qam_A 92 -KNQSY-KIFGNIPYN 105 (244)
T ss_dssp -SSCCC-EEEEECCGG
T ss_pred -cCCCe-EEEEeCCcc
Confidence 12334 577776664
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.03 E-value=6e-10 Score=83.59 Aligned_cols=112 Identities=13% Similarity=0.020 Sum_probs=79.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||. +.+|+++ +++.++++... ++++..+|+.+.... ..+.++||+|++
T Consensus 11 ~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~-~~~~~~fD~V~~ 69 (176)
T 2ld4_A 11 SAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQS-AHKESSFDIILS 69 (176)
T ss_dssp CTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGG-CCCSSCEEEEEE
T ss_pred CCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc-----CcEEEEechhcCccc-cCCCCCEeEEEE
Confidence 4678999999986 2389999 99998877532 378888888754320 013578999999
Q ss_pred cccccCC-cchHHHHHHHHHHhcCCCceEEEEEeec------cCChHHHHHHHHHhCCcEEE
Q 046623 131 SDVFYDP-EEMVGLGKTLKRVCGTGRHTVVWAVSEV------RTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 131 ~~~~~~~-~~~~~~l~~~~~lL~~gG~~~i~~~~~~------~~~~~~~~~~~~~~~gf~~~ 185 (218)
+.++++. .+...+++++.++|||||.+++...... .....+.+...+.+.|| +.
T Consensus 70 ~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~ 130 (176)
T 2ld4_A 70 GLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VE 130 (176)
T ss_dssp CCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EE
T ss_pred CChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cE
Confidence 9999987 8899999999999999995554221110 01113344444499999 54
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=4.9e-09 Score=85.08 Aligned_cols=126 Identities=17% Similarity=0.122 Sum_probs=78.9
Q ss_pred HHHHHHhc--CCCCCCCeEEEECCCC------CHHHHHHHHhC-CCeEEEecCcchHHHHHHHHHHhCCCCceEE-EEee
Q 046623 41 ILAQFIST--HFDFQNKSVLELGAGA------GLPGLTAARLG-ATRVVLTDVKPLLPGLINNVEANGLGGRVEV-RELV 110 (218)
Q Consensus 41 ~l~~~l~~--~~~~~~~~vLDlG~G~------G~~~~~l~~~~-~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~-~~~d 110 (218)
.+..++.. ....++.+|||+|||+ |. ...+...+ ..+|+++|+++. + .++++ +.+|
T Consensus 49 ~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~------------v-~~v~~~i~gD 114 (290)
T 2xyq_A 49 QLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF------------V-SDADSTLIGD 114 (290)
T ss_dssp HHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC------------B-CSSSEEEESC
T ss_pred HHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC------------C-CCCEEEEECc
Confidence 35556631 2235678999999955 55 22223444 358999999986 1 23778 8888
Q ss_pred cCCCCccccccCCCCcEEEEcccccC-----------CcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHh
Q 046623 111 WGSDDLSQLSELGEFDMVIMSDVFYD-----------PEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMS 179 (218)
Q Consensus 111 ~~~~~~~~~~~~~~~D~Iv~~~~~~~-----------~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~ 179 (218)
+.+.. ..++||+|+++..... ......+++.+.++|+|||.+++.... .....+....+ ++
T Consensus 115 ~~~~~-----~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~--~~~~~~l~~~l-~~ 186 (290)
T 2xyq_A 115 CATVH-----TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE--HSWNADLYKLM-GH 186 (290)
T ss_dssp GGGCC-----CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS--SSCCHHHHHHH-TT
T ss_pred cccCC-----ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEec--cCCHHHHHHHH-HH
Confidence 86543 2367999999643211 122457899999999999944443322 23334544444 77
Q ss_pred CCcEEEEEE
Q 046623 180 QGFRVIELT 188 (218)
Q Consensus 180 ~gf~~~~~~ 188 (218)
.||...++.
T Consensus 187 ~GF~~v~~~ 195 (290)
T 2xyq_A 187 FSWWTAFVT 195 (290)
T ss_dssp EEEEEEEEE
T ss_pred cCCcEEEEE
Confidence 778765554
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.1e-10 Score=99.45 Aligned_cols=98 Identities=13% Similarity=0.067 Sum_probs=75.5
Q ss_pred CCCCeEEEECCCCCHHHHHH---HHhCCC--eEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTA---ARLGAT--RVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l---~~~~~~--~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
.++..|+|+|||+|.++..+ ++.++. +|+++|.|+++..+++..+.|++.++++++.+|+++... .+++|
T Consensus 356 ~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~L-----PEKVD 430 (637)
T 4gqb_A 356 TNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVA-----PEKAD 430 (637)
T ss_dssp TCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCC-----SSCEE
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccC-----CcccC
Confidence 44568999999999995554 344333 689999999666788888999999999999999987653 47899
Q ss_pred EEEEcccccC---CcchHHHHHHHHHHhcCCC
Q 046623 127 MVIMSDVFYD---PEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 127 ~Iv~~~~~~~---~~~~~~~l~~~~~lL~~gG 155 (218)
+||+ ..+.+ .+.+..++....++|||||
T Consensus 431 IIVS-EwMG~fLl~E~mlevL~Ardr~LKPgG 461 (637)
T 4gqb_A 431 IIVS-ELLGSFADNELSPECLDGAQHFLKDDG 461 (637)
T ss_dssp EEEC-CCCBTTBGGGCHHHHHHHHGGGEEEEE
T ss_pred EEEE-EcCcccccccCCHHHHHHHHHhcCCCc
Confidence 9996 33222 1334578888899999999
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.6e-09 Score=93.96 Aligned_cols=150 Identities=11% Similarity=0.003 Sum_probs=96.6
Q ss_pred CeEEEECCCCCHHHHHHHHh--------C--------CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc
Q 046623 55 KSVLELGAGAGLPGLTAARL--------G--------ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS 117 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~--------~--------~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (218)
.+|+|.+||+|.+.+.+++. . ..+++|+|+++ ++..|+.|+...++...+.+..+|......
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~- 324 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ- 324 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS-
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc-
Confidence 39999999999988876422 0 24799999999 999999999998876544445666543321
Q ss_pred ccccCCCCcEEEEcccccCCc-----------------------c------hHHHHHHHHHHhcCCCceEEEEEeec--c
Q 046623 118 QLSELGEFDMVIMSDVFYDPE-----------------------E------MVGLGKTLKRVCGTGRHTVVWAVSEV--R 166 (218)
Q Consensus 118 ~~~~~~~~D~Iv~~~~~~~~~-----------------------~------~~~~l~~~~~lL~~gG~~~i~~~~~~--~ 166 (218)
....+||+|++|+|+.... . .-.++..+.+.|++||++.+++.... +
T Consensus 325 --~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~ 402 (544)
T 3khk_A 325 --HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSS 402 (544)
T ss_dssp --CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHC
T ss_pred --cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhc
Confidence 1346899999999986420 0 01588889999999997777765443 2
Q ss_pred C-ChHHHHHHHHHhCCcEEEEE--EccCCCCCCCceeEEEecCC
Q 046623 167 T-RTGDCLHELIMSQGFRVIEL--TCQLGGGCPEAFAVYELIPP 207 (218)
Q Consensus 167 ~-~~~~~~~~~~~~~gf~~~~~--~~~~~~~~~~~~~l~~~~~~ 207 (218)
. .....++..+.+.+.-...+ |-....+......++-+.+.
T Consensus 403 ~~~~~~~iRk~Lle~~~l~aII~LP~~lF~~t~i~t~Ilvl~K~ 446 (544)
T 3khk_A 403 NTNNEGEIRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKD 446 (544)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEEECCTTBCCSCSSCEEEEEEESC
T ss_pred CcchHHHHHHHHHhCCcHhEEEECCCCCCCCCCCCeEEEEEecC
Confidence 2 23344444434444432222 43333344444555666544
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.1e-11 Score=96.84 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=60.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..+++.+ .+++++|+++ +++.++++... ..+++++.+|+.+.... ..++| .|++
T Consensus 28 ~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~---~~~v~~~~~D~~~~~~~---~~~~f-~vv~ 99 (245)
T 1yub_A 28 KETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQDILQFQFP---NKQRY-KIVG 99 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTT---CSEEEECCSCCTTTTCC---CSSEE-EEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhcc---CCceEEEECChhhcCcc---cCCCc-EEEE
Confidence 467799999999999999998887 5999999999 99888877642 24688998888765431 12568 7888
Q ss_pred cccccC
Q 046623 131 SDVFYD 136 (218)
Q Consensus 131 ~~~~~~ 136 (218)
|.|++.
T Consensus 100 n~Py~~ 105 (245)
T 1yub_A 100 NIPYHL 105 (245)
T ss_dssp ECCSSS
T ss_pred eCCccc
Confidence 777654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.7e-09 Score=85.67 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=72.3
Q ss_pred CeEEEECCCCC---HHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc--cccccCCCCc-
Q 046623 55 KSVLELGAGAG---LPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL--SQLSELGEFD- 126 (218)
Q Consensus 55 ~~vLDlG~G~G---~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~D- 126 (218)
.+|||||||++ .....+.+ .+..+|+++|.|+ ++..+++.+.... ..++.++.+|+.+... ..-...+.||
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~~~~~~~~~D~ 158 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPASILDAPELRDTLDL 158 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHHHHTCHHHHTTCCT
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhhhhcccccccccCc
Confidence 58999999973 33333333 3446999999999 9999998875532 2358999999876421 0000023344
Q ss_pred ----EEEEcccccCCcc---hHHHHHHHHHHhcCCCceE
Q 046623 127 ----MVIMSDVFYDPEE---MVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 127 ----~Iv~~~~~~~~~~---~~~~l~~~~~lL~~gG~~~ 158 (218)
.|+++.++|+..+ +..++..+.+.|+|||.++
T Consensus 159 ~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lv 197 (277)
T 3giw_A 159 TRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLA 197 (277)
T ss_dssp TSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEE
T ss_pred CCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEE
Confidence 5788899998766 5689999999999999333
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.9e-09 Score=85.70 Aligned_cols=76 Identities=18% Similarity=0.122 Sum_probs=62.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++ +|||+|||+|.++..+++.+. +|+++|+++ +++.+++++.. .+++++.+|+.+.... ....+|.|++
T Consensus 46 ~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~~~~---~~~~~~~iv~ 116 (271)
T 3fut_A 46 FTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLYPWE---EVPQGSLLVA 116 (271)
T ss_dssp CCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGSCGG---GSCTTEEEEE
T ss_pred CCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhCChh---hccCccEEEe
Confidence 456 999999999999999998874 899999999 99999988752 4599999998776542 1136899999
Q ss_pred cccccC
Q 046623 131 SDVFYD 136 (218)
Q Consensus 131 ~~~~~~ 136 (218)
|.|++-
T Consensus 117 NlPy~i 122 (271)
T 3fut_A 117 NLPYHI 122 (271)
T ss_dssp EECSSC
T ss_pred cCcccc
Confidence 888754
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.4e-08 Score=76.70 Aligned_cols=100 Identities=17% Similarity=0.122 Sum_probs=73.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCC--CCceEEEEeecCCCC-------------c
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGL--GGRVEVRELVWGSDD-------------L 116 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~-------------~ 116 (218)
+.++|||+|| |..++.+++....+|+.+|.++ ..+.++++++..+. .++++++.+|..+.. .
T Consensus 30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 4569999998 5677777765346999999999 99999999999987 778999998865431 0
Q ss_pred cc-------cccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 117 SQ-------LSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 117 ~~-------~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
.. ....++||+|++... .....+..+.++|+||| +++.
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~GG--~Iv~ 152 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRPV--TLLF 152 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSCE--EEEE
T ss_pred HHHhhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCCe--EEEE
Confidence 00 012368999999543 23466777789999999 4443
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.5e-08 Score=87.97 Aligned_cols=111 Identities=11% Similarity=0.031 Sum_probs=75.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC----CCeEEEecCcc-hHHHH--HHHHHHhCCCCc---eEEEEeecCCCCcccccc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG----ATRVVLTDVKP-LLPGL--INNVEANGLGGR---VEVRELVWGSDDLSQLSE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~----~~~v~~~D~~~-~~~~a--~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~ 121 (218)
.++.+|||.|||+|.+.+.+++.. ..+++|+|+++ ++..| +.|+..+.+... ..+...|+.... ...
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~---~~~ 396 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLN---PED 396 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCC---GGG
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccc---ccc
Confidence 357799999999999999987643 24799999999 99988 555544332211 233333333211 114
Q ss_pred CCCCcEEEEcccccCC-c----------------------------chHHHHHHHHHHhcCCCceEEEEEeec
Q 046623 122 LGEFDMVIMSDVFYDP-E----------------------------EMVGLGKTLKRVCGTGRHTVVWAVSEV 165 (218)
Q Consensus 122 ~~~~D~Iv~~~~~~~~-~----------------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~ 165 (218)
..+||+|++|+|+... . ....+++.+.++|++||++.+++....
T Consensus 397 ~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~ 469 (878)
T 3s1s_A 397 FANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQY 469 (878)
T ss_dssp GTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHH
T ss_pred cCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHH
Confidence 5689999999998431 0 133477888999999997776665543
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2.6e-09 Score=95.10 Aligned_cols=100 Identities=14% Similarity=0.092 Sum_probs=72.1
Q ss_pred CCeEEEECCCCCHHHHHH---HH-hC----------CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-
Q 046623 54 NKSVLELGAGAGLPGLTA---AR-LG----------ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS- 117 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l---~~-~~----------~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~- 117 (218)
+..|||+|||+|.++..+ ++ .+ +.+|+++|.|+ +...++... .|++.++++++.+|+++....
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~-~Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMN-VRTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHH-HHTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHH-hcCCCCeEEEEeCchhhccccc
Confidence 458999999999997543 22 22 23999999999 766555544 488888899999998766430
Q ss_pred ccccCCCCcEEEEcccccC---CcchHHHHHHHHHHhcCCC
Q 046623 118 QLSELGEFDMVIMSDVFYD---PEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 118 ~~~~~~~~D~Iv~~~~~~~---~~~~~~~l~~~~~lL~~gG 155 (218)
.....+++|+||+ ..+.+ .+...+++..+.+.|+|||
T Consensus 489 ~~~~~ekVDIIVS-ElmGsfl~nEL~pe~Ld~v~r~Lkp~G 528 (745)
T 3ua3_A 489 KDRGFEQPDIIVS-ELLGSFGDNELSPECLDGVTGFLKPTT 528 (745)
T ss_dssp HHTTCCCCSEEEE-CCCBTTBGGGSHHHHHHTTGGGSCTTC
T ss_pred ccCCCCcccEEEE-eccccccchhccHHHHHHHHHhCCCCc
Confidence 0001578999998 33333 2455678888899999999
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-09 Score=88.03 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=106.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
..+..+||+.+|||.+++.+.+ +..+++.+|.++ +++.+++|++. ..++.+...|..........+..+||+|++
T Consensus 90 ~n~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~~~~fdLVfi 165 (283)
T 2oo3_A 90 INLNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGLIFI 165 (283)
T ss_dssp HSSSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEEEEE
T ss_pred hcCCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCCCCCccEEEE
Confidence 4566899999999999999877 447999999999 99999999865 256888877743322111123457999999
Q ss_pred cccccCCcchHHHHHHHHH--HhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCC---CCCCceeEEEec
Q 046623 131 SDVFYDPEEMVGLGKTLKR--VCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGG---GCPEAFAVYELI 205 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~--lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~---~~~~~~~l~~~~ 205 (218)
.+|+....+..++++.+.+ .+.++|.+++|-....+.....+.+.+ ++.+.++..+.....+ .....-=++-+.
T Consensus 166 DPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l-~~~~~~~l~~el~~~~~~~~gm~gsGm~viN 244 (283)
T 2oo3_A 166 DPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKM-REISSKSVRIELHLNPLINEGMTGCGLWIIN 244 (283)
T ss_dssp CCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHH-HHHCSSEEEEEEECCCSSCCSCCEEEEEEES
T ss_pred CCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHH-HhcCCCeEEEEEEecCCCCCCcCceeEEEEC
Confidence 7777655678888888866 567899888887777777777777777 5555566555433332 222223346666
Q ss_pred CC
Q 046623 206 PP 207 (218)
Q Consensus 206 ~~ 207 (218)
+|
T Consensus 245 pP 246 (283)
T 2oo3_A 245 PP 246 (283)
T ss_dssp CC
T ss_pred Cc
Confidence 66
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.9e-09 Score=86.12 Aligned_cols=96 Identities=20% Similarity=0.194 Sum_probs=65.4
Q ss_pred CeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh-------C-CCCceEEEEeecCCCCccccccCCCC
Q 046623 55 KSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN-------G-LGGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~-------~-~~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
.+|||+|||+|..++.++..++ +|+++|+++ ++..++.+++.. + +..+++++.+|..+.... ..++|
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~---~~~~f 165 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD---ITPRP 165 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT---CSSCC
T ss_pred CEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHh---CcccC
Confidence 7999999999999999998877 899999999 877777766432 1 223588998876543211 12469
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
|+|++++++.... -.+.++...+.+++.+
T Consensus 166 DvV~lDP~y~~~~-~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 166 QVVYLDPMFPHKQ-KSALVKKEMRVFQSLV 194 (258)
T ss_dssp SEEEECCCCCCCC-C-----HHHHHHHHHS
T ss_pred CEEEEcCCCCCcc-cchHHHHHHHHHHHhh
Confidence 9999987775532 2345555556665543
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.83 E-value=1e-09 Score=87.75 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=61.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-h-------HHHHHHHHHHhCCCCceEEEEeecCCCCccccccC-
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-L-------LPGLINNVEANGLGGRVEVRELVWGSDDLSQLSEL- 122 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~-------~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~- 122 (218)
.++.+|||+|||+|..++.+++.+. +|+++|+++ . ++.+++|.+.+++.++++++.+|..+.... .+.
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~--~~~~ 158 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPA--LVKT 158 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHH--HHHH
T ss_pred CCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHh--hhcc
Confidence 3567999999999999999998765 899999998 3 455667777776656699999887543210 022
Q ss_pred -CCCcEEEEcccccC
Q 046623 123 -GEFDMVIMSDVFYD 136 (218)
Q Consensus 123 -~~~D~Iv~~~~~~~ 136 (218)
++||+|++++++.+
T Consensus 159 ~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPE 173 (258)
T ss_dssp HCCCSEEEECCCC--
T ss_pred CCCccEEEECCCCCC
Confidence 68999999887754
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-08 Score=79.85 Aligned_cols=83 Identities=13% Similarity=0.053 Sum_probs=60.9
Q ss_pred HHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCC
Q 046623 45 FISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELG 123 (218)
Q Consensus 45 ~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 123 (218)
.+......++.+|||+|||+|.++..+++.+..+|+++|+++ +++.++++ . ..+++++.+|+........ .+
T Consensus 23 iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~----~~~v~~i~~D~~~~~~~~~--~~ 95 (249)
T 3ftd_A 23 IAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G----DERLEVINEDASKFPFCSL--GK 95 (249)
T ss_dssp HHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C----CTTEEEECSCTTTCCGGGS--CS
T ss_pred HHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c----CCCeEEEEcchhhCChhHc--cC
Confidence 333333356789999999999999999887656999999999 99998877 1 2458999999887764321 12
Q ss_pred CCcEEEEccccc
Q 046623 124 EFDMVIMSDVFY 135 (218)
Q Consensus 124 ~~D~Iv~~~~~~ 135 (218)
...|++|.|++
T Consensus 96 -~~~vv~NlPy~ 106 (249)
T 3ftd_A 96 -ELKVVGNLPYN 106 (249)
T ss_dssp -SEEEEEECCTT
T ss_pred -CcEEEEECchh
Confidence 23666766653
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=9e-09 Score=82.02 Aligned_cols=164 Identities=16% Similarity=0.029 Sum_probs=95.6
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEe
Q 046623 32 GAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVREL 109 (218)
Q Consensus 32 g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~ 109 (218)
|...-.+++.|.++..+....++.+|||||||+|.++..++.. +..++.++|+.. ........ ...+ .++.....
T Consensus 53 ~~YrSRaA~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g--~~ii~~~~ 129 (277)
T 3evf_A 53 GVAVSRGTAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLG--WNIITFKD 129 (277)
T ss_dssp CBCSSTHHHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTT--GGGEEEEC
T ss_pred CCccccHHHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCC--CCeEEEec
Confidence 3344578889999988844456779999999999999988754 566788888764 21110000 0001 12333343
Q ss_pred ecCCCCccccccCCCCcEEEEcccccCC----cc--hHHHHHHHHHHhcCC-CceEEEEEeeccCChHHHHHHHHHhCCc
Q 046623 110 VWGSDDLSQLSELGEFDMVIMSDVFYDP----EE--MVGLGKTLKRVCGTG-RHTVVWAVSEVRTRTGDCLHELIMSQGF 182 (218)
Q Consensus 110 d~~~~~~~~~~~~~~~D~Iv~~~~~~~~----~~--~~~~l~~~~~lL~~g-G~~~i~~~~~~~~~~~~~~~~~~~~~gf 182 (218)
++..... ..+++|+|+++-..... +. ...+++.+.++|+|| |.+++-+..++-....+++..+ +..|
T Consensus 130 ~~dv~~l----~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~l--k~~F 203 (277)
T 3evf_A 130 KTDIHRL----EPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELL--QRRF 203 (277)
T ss_dssp SCCTTTS----CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHH--HHHH
T ss_pred cceehhc----CCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHH--HHhc
Confidence 3322222 45789999995443310 11 123568888999999 9444433321123345555555 4556
Q ss_pred EEEEE--EccCCCCCCCceeEEEec
Q 046623 183 RVIEL--TCQLGGGCPEAFAVYELI 205 (218)
Q Consensus 183 ~~~~~--~~~~~~~~~~~~~l~~~~ 205 (218)
.-..+ | ..+....+.+.+-..+
T Consensus 204 ~~V~~~KP-aSR~~S~E~Y~V~~~r 227 (277)
T 3evf_A 204 GGTVIRNP-LSRNSTHEMYYVSGAR 227 (277)
T ss_dssp CCEEECCT-TSCTTCCCEEEESSCC
T ss_pred CCEEEEeC-CCCCCCCceEEEEecC
Confidence 66555 6 6666666666664433
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.5e-08 Score=81.93 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=60.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCe----EEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCC--
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATR----VVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELG-- 123 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~----v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-- 123 (218)
..++.+|||+|||+|.++..+++.+. + |+++|+++ +++.++++. ..+++++.+|+.+..........
T Consensus 40 ~~~~~~VLEIG~G~G~lt~~La~~~~-~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~~~~~~~~~~~~ 113 (279)
T 3uzu_A 40 PERGERMVEIGPGLGALTGPVIARLA-TPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTFDFGSIARPGDE 113 (279)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHHC-BTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGCCGGGGSCSSSS
T ss_pred CCCcCEEEEEccccHHHHHHHHHhCC-CcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcCChhHhcccccC
Confidence 35678999999999999999987755 4 99999999 999999883 24599999998876653321111
Q ss_pred CCcEEEEccccc
Q 046623 124 EFDMVIMSDVFY 135 (218)
Q Consensus 124 ~~D~Iv~~~~~~ 135 (218)
..+.|++|.|++
T Consensus 114 ~~~~vv~NlPY~ 125 (279)
T 3uzu_A 114 PSLRIIGNLPYN 125 (279)
T ss_dssp CCEEEEEECCHH
T ss_pred CceEEEEccCcc
Confidence 345788877764
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.7e-08 Score=82.32 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=62.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccc--cCCCCcE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLS--ELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~D~ 127 (218)
.++.+|||+|||+|..+..+++.. ..+|+++|+++ +++.++++++.++ .++.++.+|+.+... ... ...+||.
T Consensus 25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~-~l~~~g~~~~D~ 101 (301)
T 1m6y_A 25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADF-LLKTLGIEKVDG 101 (301)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHH-HHHHTTCSCEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHH-HHHhcCCCCCCE
Confidence 467899999999999999998763 46999999999 9999999998877 569999988765321 000 1157999
Q ss_pred EEEcccc
Q 046623 128 VIMSDVF 134 (218)
Q Consensus 128 Iv~~~~~ 134 (218)
|+++.++
T Consensus 102 Vl~D~gv 108 (301)
T 1m6y_A 102 ILMDLGV 108 (301)
T ss_dssp EEEECSC
T ss_pred EEEcCcc
Confidence 9986654
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.8e-08 Score=80.47 Aligned_cols=162 Identities=13% Similarity=-0.042 Sum_probs=95.3
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEe
Q 046623 32 GAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVREL 109 (218)
Q Consensus 32 g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~ 109 (218)
|...-.+++.|.++..+....++.+|||||||+|.++..++ +.++.++.++|+.. ....+... ...+ .++.....
T Consensus 69 g~YrSRAAfKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g--~~ii~~~~ 145 (282)
T 3gcz_A 69 GIAVSRGSAKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG--WNLIRFKD 145 (282)
T ss_dssp SBCSSTHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT--GGGEEEEC
T ss_pred CCEecHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC--CceEEeeC
Confidence 33444788999999887544567799999999999999987 55667899999875 32222110 0001 11222221
Q ss_pred ecCCCCccccccCCCCcEEEEcccccCCc-------chHHHHHHHHHHhcCC--CceEEEEEeeccCChHHHHHHHHHhC
Q 046623 110 VWGSDDLSQLSELGEFDMVIMSDVFYDPE-------EMVGLGKTLKRVCGTG--RHTVVWAVSEVRTRTGDCLHELIMSQ 180 (218)
Q Consensus 110 d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~-------~~~~~l~~~~~lL~~g--G~~~i~~~~~~~~~~~~~~~~~~~~~ 180 (218)
+. .... ....++|+|++.-... .. ....+++.+.++|+|| |.+++-+..++-....+++..+ +.
T Consensus 146 ~~---dv~~-l~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~l--k~ 218 (282)
T 3gcz_A 146 KT---DVFN-MEVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRL--QL 218 (282)
T ss_dssp SC---CGGG-SCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHH--HH
T ss_pred Cc---chhh-cCCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHH--HH
Confidence 11 1111 1457899999854433 21 1224577778999999 9444444332123455555555 45
Q ss_pred CcEEEEE--EccCCCCCCCceeEEEe
Q 046623 181 GFRVIEL--TCQLGGGCPEAFAVYEL 204 (218)
Q Consensus 181 gf~~~~~--~~~~~~~~~~~~~l~~~ 204 (218)
.|.-..+ | ..+....+.+.+-..
T Consensus 219 ~F~~V~~~KP-aSR~~S~E~Y~V~~~ 243 (282)
T 3gcz_A 219 KHGGGLVRVP-LSRNSTHEMYWVSGT 243 (282)
T ss_dssp HHCCEEECCT-TSCTTCCCEEEETTC
T ss_pred hcCCEEEEcC-CCcccCcceeEEEec
Confidence 5665555 6 666566666655433
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-08 Score=79.99 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=57.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCe--EEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccccc-CCCCcE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATR--VVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSE-LGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~--v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~D~ 127 (218)
.++.+|||+|||+|.++. +++ + .+ |+++|+++ +++.+++++... .+++++.+|+.......... .+..|.
T Consensus 20 ~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~~~~~~~~~~~~ 93 (252)
T 1qyr_A 20 QKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGELAEKMGQPLR 93 (252)
T ss_dssp CTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHHHHHHTSCEE
T ss_pred CCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHHHhhcccCCceE
Confidence 467799999999999999 654 3 36 99999999 999998876543 35899999987755422110 124578
Q ss_pred EEEccccc
Q 046623 128 VIMSDVFY 135 (218)
Q Consensus 128 Iv~~~~~~ 135 (218)
|++|.|++
T Consensus 94 vvsNlPY~ 101 (252)
T 1qyr_A 94 VFGNLPYN 101 (252)
T ss_dssp EEEECCTT
T ss_pred EEECCCCC
Confidence 88877764
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1e-07 Score=79.48 Aligned_cols=134 Identities=17% Similarity=0.084 Sum_probs=90.9
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCC-----CceEEEEee
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLG-----GRVEVRELV 110 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~-----~~~~~~~~d 110 (218)
+++..+..+ . ..+|.+|||+.+|.|.=+..++..+. ..++++|+++ -+..+++|+...+.. .++.+...|
T Consensus 136 aS~l~~~~L-~--~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D 212 (359)
T 4fzv_A 136 ASLLPVLAL-G--LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWD 212 (359)
T ss_dssp GGHHHHHHH-C--CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCC
T ss_pred HHHHHHHHh-C--CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCc
Confidence 444444444 3 25788999999999998888876544 4799999999 999999999887653 346666555
Q ss_pred cCCCCccccccCCCCcEEEEcccccCC--------c----------------chHHHHHHHHHHhcCCCceEEEEEeecc
Q 046623 111 WGSDDLSQLSELGEFDMVIMSDVFYDP--------E----------------EMVGLGKTLKRVCGTGRHTVVWAVSEVR 166 (218)
Q Consensus 111 ~~~~~~~~~~~~~~~D~Iv~~~~~~~~--------~----------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~ 166 (218)
...... ...+.||.|++..|+... . ...+++..+.++|||||.++..+++-..
T Consensus 213 ~~~~~~---~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~ 289 (359)
T 4fzv_A 213 GRKWGE---LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSH 289 (359)
T ss_dssp GGGHHH---HSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCT
T ss_pred hhhcch---hccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCch
Confidence 432211 135689999998776431 0 1356888889999999954444554444
Q ss_pred CChHHHHHHHH
Q 046623 167 TRTGDCLHELI 177 (218)
Q Consensus 167 ~~~~~~~~~~~ 177 (218)
..-+..+..++
T Consensus 290 ~ENE~vV~~~L 300 (359)
T 4fzv_A 290 LQNEYVVQGAI 300 (359)
T ss_dssp TTTHHHHHHHH
T ss_pred hhCHHHHHHHH
Confidence 44455555544
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-06 Score=75.23 Aligned_cols=127 Identities=15% Similarity=0.085 Sum_probs=84.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh----C----------CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL----G----------ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL 116 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~----~----------~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 116 (218)
.++.+|+|..||+|.+.+.+.+. . ...++|+|+++ +...++-|+...+... ..+..+|......
T Consensus 216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~-~~I~~~dtL~~~~ 294 (530)
T 3ufb_A 216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY-PRIDPENSLRFPL 294 (530)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSC-CEEECSCTTCSCG
T ss_pred CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcc-ccccccccccCch
Confidence 45679999999999998876432 1 13699999999 9999999998888753 4566666554432
Q ss_pred cccccCCCCcEEEEcccccCCc----------------chHHHHHHHHHHhc-------CCCceEEEEEeec--cCChHH
Q 046623 117 SQLSELGEFDMVIMSDVFYDPE----------------EMVGLGKTLKRVCG-------TGRHTVVWAVSEV--RTRTGD 171 (218)
Q Consensus 117 ~~~~~~~~~D~Iv~~~~~~~~~----------------~~~~~l~~~~~lL~-------~gG~~~i~~~~~~--~~~~~~ 171 (218)
.......+||+|++|||+.... ..-.++..+.+.|+ +||++.+++.... +.....
T Consensus 295 ~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~ 374 (530)
T 3ufb_A 295 REMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGISA 374 (530)
T ss_dssp GGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHHH
T ss_pred hhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhccchHH
Confidence 2222446899999999985311 12346677777776 6887777766442 333444
Q ss_pred HHH-HHHHh
Q 046623 172 CLH-ELIMS 179 (218)
Q Consensus 172 ~~~-~~~~~ 179 (218)
.++ .+++.
T Consensus 375 ~iRk~Lle~ 383 (530)
T 3ufb_A 375 RIKEELLKN 383 (530)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 344 44343
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-06 Score=70.80 Aligned_cols=147 Identities=15% Similarity=0.013 Sum_probs=97.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHh-C---CCCceEEEEeecCCCCccccccCCCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEAN-G---LGGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~-~---~~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
...++||=||.|.|.....+.+.. ..+++.+|+++ .++.+++.+... + -.++++++..|....... ..++|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~---~~~~y 158 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ---TSQTF 158 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC---SSCCE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhh---ccccC
Confidence 356799999999999999998764 46999999999 999998887542 1 136799999887765421 55789
Q ss_pred cEEEEcc--cccCCc--chHHHHHHHHHHhcCCCceEEEEEeeccC--ChHHHHHHHHHhCCcEEEEE---EccCCCCCC
Q 046623 126 DMVIMSD--VFYDPE--EMVGLGKTLKRVCGTGRHTVVWAVSEVRT--RTGDCLHELIMSQGFRVIEL---TCQLGGGCP 196 (218)
Q Consensus 126 D~Iv~~~--~~~~~~--~~~~~l~~~~~lL~~gG~~~i~~~~~~~~--~~~~~~~~~~~~~gf~~~~~---~~~~~~~~~ 196 (218)
|+|++.. +..... -..++++.+.+.|+|||.++......... ......+.+ ++ -|..... .++..++..
T Consensus 159 DvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l-~~-~F~~v~~~~~~vPty~~g~ 236 (294)
T 3o4f_A 159 DVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKL-SH-YFSDVGFYQAAIPTYYGGI 236 (294)
T ss_dssp EEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHH-HH-HCSEEEEEEECCTTSSSSC
T ss_pred CEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHH-Hh-hCCceeeeeeeeccCCCcc
Confidence 9999732 221111 23679999999999999555444433211 122333443 33 3554443 455555666
Q ss_pred CceeEEE
Q 046623 197 EAFAVYE 203 (218)
Q Consensus 197 ~~~~l~~ 203 (218)
..+.+..
T Consensus 237 w~f~~as 243 (294)
T 3o4f_A 237 MTFAWAT 243 (294)
T ss_dssp EEEEEEE
T ss_pred eeheeEE
Confidence 6666554
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=5.2e-07 Score=72.47 Aligned_cols=162 Identities=13% Similarity=-0.012 Sum_probs=93.8
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEe
Q 046623 32 GAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVREL 109 (218)
Q Consensus 32 g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~ 109 (218)
|...-.+++.|.+...+....++.+||||||++|.++..+++ .+...|.++|+.. ........ ...+. +.+.+. .
T Consensus 60 g~yrSRaa~KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~-~~~~~-~iv~~~-~ 136 (300)
T 3eld_A 60 GISVSRGAAKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHM-QTLGW-NIVKFK-D 136 (300)
T ss_dssp CCCSSTTHHHHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTTG-GGEEEE-C
T ss_pred CCccchHHHHHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccc-cccCC-ceEEee-c
Confidence 344457888888888773335788999999999999999985 4666889999864 31110000 00000 112222 1
Q ss_pred ecCCCCccccccCCCCcEEEEcccccCCcc-------hHHHHHHHHHHhcCC-CceEEEEEeeccCChHHHHHHHHHhCC
Q 046623 110 VWGSDDLSQLSELGEFDMVIMSDVFYDPEE-------MVGLGKTLKRVCGTG-RHTVVWAVSEVRTRTGDCLHELIMSQG 181 (218)
Q Consensus 110 d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~-------~~~~l~~~~~lL~~g-G~~~i~~~~~~~~~~~~~~~~~~~~~g 181 (218)
+..-... ...++|+|+++-... ... ...+++.+.++|+|| |.+++-+....-....+++..+ +..
T Consensus 137 ~~di~~l----~~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~l--k~~ 209 (300)
T 3eld_A 137 KSNVFTM----PTEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERL--QLR 209 (300)
T ss_dssp SCCTTTS----CCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHH--HHH
T ss_pred Cceeeec----CCCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHH--HHh
Confidence 1111111 346899999854333 221 234677788999999 9544443321123344555555 445
Q ss_pred cEEEEE--EccCCCCCCCceeEEEe
Q 046623 182 FRVIEL--TCQLGGGCPEAFAVYEL 204 (218)
Q Consensus 182 f~~~~~--~~~~~~~~~~~~~l~~~ 204 (218)
|.-..+ | ..+....+.|.+...
T Consensus 210 F~~V~~~KP-aSR~~S~E~Y~V~~~ 233 (300)
T 3eld_A 210 FGGGIVRVP-FSRNSTHEMYYISGA 233 (300)
T ss_dssp HCCEEECCT-TSCTTCCCEEEESSC
T ss_pred CCcEEEEeC-CCCCCChHHeeeccC
Confidence 665555 6 666666666666433
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.48 E-value=5e-07 Score=72.06 Aligned_cols=130 Identities=15% Similarity=0.014 Sum_probs=78.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-------CC------CeEEEecCcc-hHH--------------HHHHHHHHhC-----
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-------GA------TRVVLTDVKP-LLP--------------GLINNVEANG----- 99 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-------~~------~~v~~~D~~~-~~~--------------~a~~~~~~~~----- 99 (218)
+..+|||+|+|+|...+.+++. .+ .+++++|..+ ..+ .++++++...
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4468999999999887775432 22 3899999876 322 3444443310
Q ss_pred -----CC---CceEEEEeecCCCCcccc-ccCCCCcEEEEcccccC--Ccc--hHHHHHHHHHHhcCCCceEEEEEeecc
Q 046623 100 -----LG---GRVEVRELVWGSDDLSQL-SELGEFDMVIMSDVFYD--PEE--MVGLGKTLKRVCGTGRHTVVWAVSEVR 166 (218)
Q Consensus 100 -----~~---~~~~~~~~d~~~~~~~~~-~~~~~~D~Iv~~~~~~~--~~~--~~~~l~~~~~lL~~gG~~~i~~~~~~~ 166 (218)
.. .++++..+|..+...... .....||.|+. |++.. .++ ..++++.+.++|+|||.++.+++
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~ifl-D~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysa---- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFL-DGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS---- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEE-CSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCC----
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEE-CCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeC----
Confidence 11 235677777654322100 01137999999 44432 112 47899999999999993332221
Q ss_pred CChHHHHHHHHHhCCcEEEEEEcc
Q 046623 167 TRTGDCLHELIMSQGFRVIELTCQ 190 (218)
Q Consensus 167 ~~~~~~~~~~~~~~gf~~~~~~~~ 190 (218)
. ..+...+...||.+.+.|-.
T Consensus 215 --a-~~vrr~L~~aGF~v~~~~g~ 235 (257)
T 2qy6_A 215 --A-GFVRRGLQEAGFTMQKRKGF 235 (257)
T ss_dssp --B-HHHHHHHHHHTEEEEEECCS
T ss_pred --C-HHHHHHHHHCCCEEEeCCCC
Confidence 2 23444447889999887543
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-06 Score=69.48 Aligned_cols=150 Identities=13% Similarity=-0.015 Sum_probs=90.7
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEE
Q 046623 31 TGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRE 108 (218)
Q Consensus 31 ~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~ 108 (218)
.|...-.+++.|.+........++.+||||||++|.++..++ ..++.+|.++|+.. -.+.-.-. ...+. +.+.+..
T Consensus 72 ~g~y~SR~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~-~ql~w-~lV~~~~ 149 (321)
T 3lkz_A 72 GGHPVSRGTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLV-QSYGW-NIVTMKS 149 (321)
T ss_dssp SCCCSSTHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCC-CBTTG-GGEEEEC
T ss_pred CCCccchHHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchh-hhcCC-cceEEEe
Confidence 355566788999988887444677799999999999999775 56777899999876 33210000 00111 2266665
Q ss_pred e-ecCCCCccccccCCCCcEEEEcccccCCcc-------hHHHHHHHHHHhcCC-CceEEEEEeeccCChHHHHHHHHHh
Q 046623 109 L-VWGSDDLSQLSELGEFDMVIMSDVFYDPEE-------MVGLGKTLKRVCGTG-RHTVVWAVSEVRTRTGDCLHELIMS 179 (218)
Q Consensus 109 ~-d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~-------~~~~l~~~~~lL~~g-G~~~i~~~~~~~~~~~~~~~~~~~~ 179 (218)
. |+... +..++|+|+| |+-...+. .-..++.+.++|++| |.+.+-+..++.+.+.+.++.+-..
T Consensus 150 ~~Dv~~l------~~~~~D~ivc-DigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~~ 222 (321)
T 3lkz_A 150 GVDVFYR------PSECCDTLLC-DIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQRR 222 (321)
T ss_dssp SCCTTSS------CCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHHH
T ss_pred ccCHhhC------CCCCCCEEEE-ECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHHH
Confidence 4 54333 2366999998 33333222 122566678899988 6444433333334455666666344
Q ss_pred CCcEEEEEEc
Q 046623 180 QGFRVIELTC 189 (218)
Q Consensus 180 ~gf~~~~~~~ 189 (218)
.|=..+..|.
T Consensus 223 fgg~lvr~P~ 232 (321)
T 3lkz_A 223 YGGGLVRNPL 232 (321)
T ss_dssp HCCEEECCTT
T ss_pred hCCEeEeCCC
Confidence 5555555566
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.2e-07 Score=72.19 Aligned_cols=140 Identities=15% Similarity=0.067 Sum_probs=82.2
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-CC----CeEEEec--Ccc-hHHHHHHHHHHhCCCCc
Q 046623 32 GAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-GA----TRVVLTD--VKP-LLPGLINNVEANGLGGR 103 (218)
Q Consensus 32 g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~~----~~v~~~D--~~~-~~~~a~~~~~~~~~~~~ 103 (218)
|...-.+++.|.+.-.+....++.+||||||+.|.++..+++. +. ..++++| +.| .... .++ +-
T Consensus 52 g~yRSRAayKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~-------~Gv-~~ 123 (269)
T 2px2_A 52 GHPVSRGTAKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQS-------YGW-NI 123 (269)
T ss_dssp SCCSSTHHHHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCS-------TTG-GG
T ss_pred CCcccHHHHHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccC-------CCc-eE
Confidence 4445578888888877753357889999999999999999764 12 2456666 333 1100 111 11
Q ss_pred eEEEEe-ecCCCCccccccCCCCcEEEEcccccCC-c--c---hHHHHHHHHHHhcCCC-ceEEEEEeeccCChHHHHHH
Q 046623 104 VEVREL-VWGSDDLSQLSELGEFDMVIMSDVFYDP-E--E---MVGLGKTLKRVCGTGR-HTVVWAVSEVRTRTGDCLHE 175 (218)
Q Consensus 104 ~~~~~~-d~~~~~~~~~~~~~~~D~Iv~~~~~~~~-~--~---~~~~l~~~~~lL~~gG-~~~i~~~~~~~~~~~~~~~~ 175 (218)
+.+..+ |+.+. ...++|+|++.-..... . + ....++.+.++|+||| .+++-+.........++++.
T Consensus 124 i~~~~G~Df~~~------~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~ 197 (269)
T 2px2_A 124 VTMKSGVDVFYK------PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLES 197 (269)
T ss_dssp EEEECSCCGGGS------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHH
T ss_pred EEeeccCCccCC------CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHH
Confidence 344445 76542 33579999984332211 0 1 1125677788999999 66655544323334444555
Q ss_pred HHHhCCcEEEEE
Q 046623 176 LIMSQGFRVIEL 187 (218)
Q Consensus 176 ~~~~~gf~~~~~ 187 (218)
+ +..|.-..+
T Consensus 198 l--k~~F~~vkv 207 (269)
T 2px2_A 198 L--QRRFGGGLV 207 (269)
T ss_dssp H--HHHHCCEEE
T ss_pred H--HHHcCCEEE
Confidence 5 445555555
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.3e-06 Score=63.09 Aligned_cols=94 Identities=20% Similarity=0.171 Sum_probs=63.2
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCeEEEECCCCC-HHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEE
Q 046623 32 GAWLWDSALILAQFISTHFDFQNKSVLELGAGAG-LPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRE 108 (218)
Q Consensus 32 g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G-~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~ 108 (218)
+.+.|+ .|++|+.+.. .++.+|||+|||+| ..+..+++ .|. .|+++|+++ +++ ++.
T Consensus 18 ~~~m~e---~LaeYI~~~~-~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~----------------~v~ 76 (153)
T 2k4m_A 18 GSHMWN---DLAVYIIRCS-GPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG----------------IVR 76 (153)
T ss_dssp CCHHHH---HHHHHHHHHS-CSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT----------------EEC
T ss_pred hhhHHH---HHHHHHHhcC-CCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc----------------eEE
Confidence 445544 4777876622 24569999999999 59999987 665 899999999 776 666
Q ss_pred eecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhc
Q 046623 109 LVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCG 152 (218)
Q Consensus 109 ~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~ 152 (218)
.|+.+...+ .-+.||+|.+..|. .++...+..+++...
T Consensus 77 dDiF~P~~~---~Y~~~DLIYsirPP---~El~~~i~~lA~~v~ 114 (153)
T 2k4m_A 77 DDITSPRME---IYRGAALIYSIRPP---AEIHSSLMRVADAVG 114 (153)
T ss_dssp CCSSSCCHH---HHTTEEEEEEESCC---TTTHHHHHHHHHHHT
T ss_pred ccCCCCccc---ccCCcCEEEEcCCC---HHHHHHHHHHHHHcC
Confidence 676654431 11489999654442 445555555555543
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-06 Score=70.10 Aligned_cols=127 Identities=13% Similarity=0.022 Sum_probs=85.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh------CCCeEEEecCcc---------------------------hHHHHHHHHHHh
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL------GATRVVLTDVKP---------------------------LLPGLINNVEAN 98 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~------~~~~v~~~D~~~---------------------------~~~~a~~~~~~~ 98 (218)
...+.|||+|+..|..++.++.. ...+++++|..+ ..+.+++|++..
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 34669999999999988887532 245899999532 356689999999
Q ss_pred CCC-CceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc-CChHHHHHHH
Q 046623 99 GLG-GRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR-TRTGDCLHEL 176 (218)
Q Consensus 99 ~~~-~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~-~~~~~~~~~~ 176 (218)
++. ++++++.+|..+.... . +.++||+|.+..-.| ......++.+.++|+||| +|++..... +...+.+.++
T Consensus 185 gl~~~~I~li~Gda~etL~~-~-~~~~~d~vfIDaD~y--~~~~~~Le~~~p~L~pGG--iIv~DD~~~~~G~~~Av~Ef 258 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPT-A-PIDTLAVLRMDGDLY--ESTWDTLTNLYPKVSVGG--YVIVDDYMMCPPCKDAVDEY 258 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTT-C-CCCCEEEEEECCCSH--HHHHHHHHHHGGGEEEEE--EEEESSCTTCHHHHHHHHHH
T ss_pred CCCcCceEEEEeCHHHHHhh-C-CCCCEEEEEEcCCcc--ccHHHHHHHHHhhcCCCE--EEEEcCCCCCHHHHHHHHHH
Confidence 884 7899999987544321 1 346899999954322 234577888999999999 444433211 2234445555
Q ss_pred HHhCCcEE
Q 046623 177 IMSQGFRV 184 (218)
Q Consensus 177 ~~~~gf~~ 184 (218)
.++.++..
T Consensus 259 ~~~~~i~~ 266 (282)
T 2wk1_A 259 RAKFDIAD 266 (282)
T ss_dssp HHHTTCCS
T ss_pred HHhcCCce
Confidence 46666543
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=9.8e-07 Score=68.54 Aligned_cols=149 Identities=13% Similarity=0.006 Sum_probs=91.0
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEe
Q 046623 32 GAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVREL 109 (218)
Q Consensus 32 g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~ 109 (218)
|...-.+++.|.+...+....++.+||||||++|.++..++ ..++.+|.++|+.. -.+.-.- ....|. +.++|..+
T Consensus 57 g~yrSRa~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~-~~s~gw-n~v~fk~g 134 (267)
T 3p8z_A 57 HHAVSRGSAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVP-MSTYGW-NIVKLMSG 134 (267)
T ss_dssp SCCSSTHHHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC-CCCTTT-TSEEEECS
T ss_pred CCccchHHHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcch-hhhcCc-CceEEEec
Confidence 33445678888888877544677799999999999999776 55677899999876 4321000 012222 34888876
Q ss_pred -ecCCCCccccccCCCCcEEEEcccccCCc---c---hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCc
Q 046623 110 -VWGSDDLSQLSELGEFDMVIMSDVFYDPE---E---MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGF 182 (218)
Q Consensus 110 -d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~---~---~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf 182 (218)
|+... +..++|.|+|.---.+.. + .-..++.+.++|++ |.+.+-+..+..+.+.+.++.+-...|=
T Consensus 135 vDv~~~------~~~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~~lq~~fgg 207 (267)
T 3p8z_A 135 KDVFYL------PPEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLERLQRKHGG 207 (267)
T ss_dssp CCGGGC------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHHHHHHHCC
T ss_pred cceeec------CCccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHHHHHHHhCC
Confidence 65333 336799999843222211 1 12255666788888 6444434333333355666666344555
Q ss_pred EEEEEEc
Q 046623 183 RVIELTC 189 (218)
Q Consensus 183 ~~~~~~~ 189 (218)
..+..|.
T Consensus 208 ~lVR~P~ 214 (267)
T 3p8z_A 208 MLVRNPL 214 (267)
T ss_dssp EEECCTT
T ss_pred EeEeCCC
Confidence 5555566
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=3e-06 Score=70.52 Aligned_cols=103 Identities=16% Similarity=0.056 Sum_probs=72.4
Q ss_pred chhHHHHHHHHhcC--------CCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEE
Q 046623 36 WDSALILAQFISTH--------FDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVR 107 (218)
Q Consensus 36 w~~~~~l~~~l~~~--------~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~ 107 (218)
-.+...|.+.+... ...+|.++|||||.+|.++..+++.+. +|+++|..++...+... .+++++
T Consensus 186 SRa~lKL~Ea~~~F~~~~~~~~~l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~~~l~~~-------~~V~~~ 257 (375)
T 4auk_A 186 SRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMAQSLMDT-------GQVTWL 257 (375)
T ss_dssp CTTHHHHHHHHHHHSCGGGHHHHSCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCCHHHHTT-------TCEEEE
T ss_pred CHHHHHHHHHHHhccchhhhhccCCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcChhhccC-------CCeEEE
Confidence 45666676654331 124788999999999999999998876 99999988733332211 458999
Q ss_pred EeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCC
Q 046623 108 ELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTG 154 (218)
Q Consensus 108 ~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~g 154 (218)
..|...... ...++|+|++.-. ..+......+.+++..+
T Consensus 258 ~~d~~~~~~----~~~~~D~vvsDm~----~~p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 258 REDGFKFRP----TRSNISWMVCDMV----EKPAKVAALMAQWLVNG 296 (375)
T ss_dssp CSCTTTCCC----CSSCEEEEEECCS----SCHHHHHHHHHHHHHTT
T ss_pred eCccccccC----CCCCcCEEEEcCC----CChHHhHHHHHHHHhcc
Confidence 888776654 4568999999433 34566666677777665
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=4.5e-06 Score=69.70 Aligned_cols=116 Identities=20% Similarity=0.125 Sum_probs=76.6
Q ss_pred HHHHHHHhcCC--CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhC---C----CCceEEEEe
Q 046623 40 LILAQFISTHF--DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANG---L----GGRVEVREL 109 (218)
Q Consensus 40 ~~l~~~l~~~~--~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~---~----~~~~~~~~~ 109 (218)
....+.+...+ ..++++||=||.|.|.....+.+.+..+++.+|+++ .++.+++.+.... . .++++++..
T Consensus 190 ~~Y~e~l~h~~l~~~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~ 269 (381)
T 3c6k_A 190 LAYTRAIMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIE 269 (381)
T ss_dssp HHHHHHHTTTTCCCCTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEES
T ss_pred HHHHHHHHHHHhhcCCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehH
Confidence 33444444422 245689999999999999999888778999999999 8888888753211 1 134677776
Q ss_pred ecCCCCccccccCCCCcEEEEccccc---CC-----c---chHHHHHHHHHHhcCCCc
Q 046623 110 VWGSDDLSQLSELGEFDMVIMSDVFY---DP-----E---EMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 110 d~~~~~~~~~~~~~~~D~Iv~~~~~~---~~-----~---~~~~~l~~~~~lL~~gG~ 156 (218)
|............++||+|+.. .+. .. . -..++++.+.+.|+|||.
T Consensus 270 Da~~fl~~~~~~~~~yDvIIvD-l~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GV 326 (381)
T 3c6k_A 270 DCIPVLKRYAKEGREFDYVIND-LTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGK 326 (381)
T ss_dssp CHHHHHHHHHHHTCCEEEEEEE-CCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHhhhhccCceeEEEEC-CCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCE
Confidence 6543221101134689999984 221 10 0 135678889999999993
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.1e-05 Score=65.87 Aligned_cols=108 Identities=13% Similarity=0.060 Sum_probs=68.9
Q ss_pred CCeEEEECCCCCHHHHHHH---------Hh-------CCCeEEEecCcc-hHHHHHHHHHHhC-----------CCCceE
Q 046623 54 NKSVLELGAGAGLPGLTAA---------RL-------GATRVVLTDVKP-LLPGLINNVEANG-----------LGGRVE 105 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~---------~~-------~~~~v~~~D~~~-~~~~a~~~~~~~~-----------~~~~~~ 105 (218)
..+|+|+||++|..++.+. +. +..+|+..|... ....+-+.+.... ......
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 4689999999998877761 11 224788999887 6655544443211 001123
Q ss_pred EEEeecCCCCccccccCCCCcEEEEcccccCCc--------------------------------------chHHHHHHH
Q 046623 106 VRELVWGSDDLSQLSELGEFDMVIMSDVFYDPE--------------------------------------EMVGLGKTL 147 (218)
Q Consensus 106 ~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~--------------------------------------~~~~~l~~~ 147 (218)
+..+.....- ....+.+++|+|+++.++|+.. +...+++..
T Consensus 133 f~~gvpgSFy-~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 133 FVAGVPGSFY-RRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp EEEEEESCTT-SCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhh-cccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333222 1223789999999999998854 344568888
Q ss_pred HHHhcCCCceEEEEE
Q 046623 148 KRVCGTGRHTVVWAV 162 (218)
Q Consensus 148 ~~lL~~gG~~~i~~~ 162 (218)
.+.|+|||++++...
T Consensus 212 a~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCL 226 (374)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHHhCCCCEEEEEEe
Confidence 999999995555444
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.00 E-value=1.2e-05 Score=65.23 Aligned_cols=47 Identities=26% Similarity=0.275 Sum_probs=42.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANG 99 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~ 99 (218)
.++..|||++||+|.+++.+++.|. +++++|+++ +++.++++++...
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFAREV 281 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHhc
Confidence 5788999999999999999998876 999999999 9999999987653
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0001 Score=61.04 Aligned_cols=141 Identities=14% Similarity=0.035 Sum_probs=81.6
Q ss_pred CCeEEEECCCCCHHHHHHHHhC--CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 54 NKSVLELGAGAGLPGLTAARLG--ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~--~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
..+++|+.||.|.+++.+...| ...+.++|+++ +++..+.|+.. ..++.+|+.+...... +...+|+++.
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~~-~~~~~D~l~~ 74 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEEF-DRLSFDMILM 74 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHHH-HHHCCSEEEE
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhHc-CcCCcCEEEE
Confidence 3489999999999999998888 44799999999 99998888632 3456667665432111 1126999999
Q ss_pred cccccCC---------cc-hHHHHHHHHHHhcCCC---ceEEEEEeec--cC-ChHHHHHHHHHhCCcEEEEEE----cc
Q 046623 131 SDVFYDP---------EE-MVGLGKTLKRVCGTGR---HTVVWAVSEV--RT-RTGDCLHELIMSQGFRVIELT----CQ 190 (218)
Q Consensus 131 ~~~~~~~---------~~-~~~~l~~~~~lL~~gG---~~~i~~~~~~--~~-~~~~~~~~~~~~~gf~~~~~~----~~ 190 (218)
++|+... ++ ...++..+.++++.-. ..+++-.... .. .....++.+ .+.|+.+...- -.
T Consensus 75 gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~l~~~~~~~~i~~~l-~~~GY~v~~~vl~a~~~ 153 (343)
T 1g55_A 75 SPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTI-ENCGFQYQEFLLSPTSL 153 (343)
T ss_dssp CCC------------------CHHHHHHHHGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHH-HHTTEEEEEEEECGGGG
T ss_pred cCCCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCCEEEEeCCccccCHHHHHHHHHHH-HHCCCeeEEEEEEHHHC
Confidence 9986421 11 2234444444443211 2344422221 11 233444444 88998876532 22
Q ss_pred CCCCCCCceeEE
Q 046623 191 LGGGCPEAFAVY 202 (218)
Q Consensus 191 ~~~~~~~~~~l~ 202 (218)
--+..+.+..+.
T Consensus 154 GvPQ~R~R~~iv 165 (343)
T 1g55_A 154 GIPNSRLRYFLI 165 (343)
T ss_dssp TCSCCCCEEEEE
T ss_pred CCCCcccEEEEE
Confidence 234555555554
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00011 Score=61.56 Aligned_cols=76 Identities=17% Similarity=0.048 Sum_probs=58.8
Q ss_pred CeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccc----cCCCCcEEE
Q 046623 55 KSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLS----ELGEFDMVI 129 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~~D~Iv 129 (218)
.+++|+.||.|.+++.+...|...+.++|+++ +++..+.|+ ....++.+|+.+....... ....+|+|+
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~------~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ 76 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF------PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGII 76 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC------TTSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC------CCCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence 48999999999999999988886788999999 988888775 2356777777665432220 236799999
Q ss_pred EcccccC
Q 046623 130 MSDVFYD 136 (218)
Q Consensus 130 ~~~~~~~ 136 (218)
.++|+..
T Consensus 77 ggpPCQ~ 83 (376)
T 3g7u_A 77 GGPPCQG 83 (376)
T ss_dssp ECCCCCT
T ss_pred ecCCCCC
Confidence 9999743
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=7.8e-05 Score=62.57 Aligned_cols=83 Identities=16% Similarity=0.069 Sum_probs=50.3
Q ss_pred CCeEEEECCCCCHHHHHHHHh------------------CCCeEEEecCcc-hHHHHHHHH--------HHhCCCCceEE
Q 046623 54 NKSVLELGAGAGLPGLTAARL------------------GATRVVLTDVKP-LLPGLINNV--------EANGLGGRVEV 106 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~------------------~~~~v~~~D~~~-~~~~a~~~~--------~~~~~~~~~~~ 106 (218)
..+|+|+||++|..++.+... +..+|+..|... -...+-+.+ +..+-.....|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 468999999999888876322 113688888774 221111111 12221112456
Q ss_pred EEeecCCCCccccccCCCCcEEEEcccccCC
Q 046623 107 RELVWGSDDLSQLSELGEFDMVIMSDVFYDP 137 (218)
Q Consensus 107 ~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~ 137 (218)
+.+..+.. .....+.+++|+|+++.++|+.
T Consensus 133 ~~gvpgSF-y~rlfp~~S~d~v~Ss~aLHWl 162 (384)
T 2efj_A 133 IGAMPGSF-YSRLFPEESMHFLHSCYCLHWL 162 (384)
T ss_dssp EEECCSCT-TSCCSCTTCEEEEEEESCTTBC
T ss_pred EEecchhh-hhccCCCCceEEEEecceeeec
Confidence 65544333 2233488999999999999875
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.83 E-value=2.1e-05 Score=62.63 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=45.6
Q ss_pred HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhC
Q 046623 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANG 99 (218)
Q Consensus 41 ~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~ 99 (218)
.|.+.+......++..|||.+||+|..++.+.+.|. +++++|+++ +++.++++++.++
T Consensus 200 ~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 200 DLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp HHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcc
Confidence 344443332235788999999999999999998875 999999999 9999999987765
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00062 Score=54.64 Aligned_cols=137 Identities=18% Similarity=0.115 Sum_probs=82.3
Q ss_pred HHHHHHHhc--CCCCCCCeEEEECC------CCCHHHHHHHHhCC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEE
Q 046623 40 LILAQFIST--HFDFQNKSVLELGA------GAGLPGLTAARLGA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRE 108 (218)
Q Consensus 40 ~~l~~~l~~--~~~~~~~~vLDlG~------G~G~~~~~l~~~~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~ 108 (218)
..|.+|+-. ..-..+.+|||+|+ .+|. ..+.+.+. ..++++|+++ ... . -.++.
T Consensus 94 tqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~sd------------a-~~~Iq 158 (344)
T 3r24_A 94 TQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVSD------------A-DSTLI 158 (344)
T ss_dssp HHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBCS------------S-SEEEE
T ss_pred HHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCcccccC------------C-CeEEE
Confidence 356677744 22245789999997 3444 33444444 3899999988 420 1 24477
Q ss_pred eecCCCCccccccCCCCcEEEEcccc---cC--------CcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHH
Q 046623 109 LVWGSDDLSQLSELGEFDMVIMSDVF---YD--------PEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELI 177 (218)
Q Consensus 109 ~d~~~~~~~~~~~~~~~D~Iv~~~~~---~~--------~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~ 177 (218)
+|+... ....+||+|++.-.. .+ ....+..++.+.+.|+|||.+++-+... .. .+.+..+
T Consensus 159 GD~~~~-----~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG--sg-~~~L~~l- 229 (344)
T 3r24_A 159 GDCATV-----HTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH--SW-NADLYKL- 229 (344)
T ss_dssp SCGGGE-----EESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS--SC-CHHHHHH-
T ss_pred cccccc-----ccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC--CC-HHHHHHH-
Confidence 775432 245789999973221 11 1235667777889999999555555433 22 3556666
Q ss_pred HhCCcEEEEE-EccCCCCCCCceeE
Q 046623 178 MSQGFRVIEL-TCQLGGGCPEAFAV 201 (218)
Q Consensus 178 ~~~gf~~~~~-~~~~~~~~~~~~~l 201 (218)
. ..|...++ +-..+....+.+.+
T Consensus 230 r-k~F~~VK~fK~ASRa~SsEvYLV 253 (344)
T 3r24_A 230 M-GHFSWWTAFVTNVNASSSEAFLI 253 (344)
T ss_dssp H-TTEEEEEEEEEGGGTTSSCEEEE
T ss_pred H-hhCCeEEEECCCCCCCCeeEEEE
Confidence 4 48887776 43344455555555
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00045 Score=56.81 Aligned_cols=72 Identities=15% Similarity=0.003 Sum_probs=55.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
++.+++|+.||.|.+++.+...|...+.++|+++ +++..+.|+... . ..|+.+.... ....+|+|+.+
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~---~~~~~D~l~~g 78 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEK---TIPDHDILCAG 78 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGG---GSCCCSEEEEE
T ss_pred CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHh---hCCCCCEEEEC
Confidence 4579999999999999999988887899999999 999988887331 1 3555544322 22469999999
Q ss_pred cccc
Q 046623 132 DVFY 135 (218)
Q Consensus 132 ~~~~ 135 (218)
+|+.
T Consensus 79 pPCQ 82 (327)
T 2c7p_A 79 FPCQ 82 (327)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 9885
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.72 E-value=3.4e-05 Score=61.80 Aligned_cols=75 Identities=11% Similarity=0.009 Sum_probs=56.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-cccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-LSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~D~Iv 129 (218)
.++..+||.+||.|..+..+++.+ .+|+++|.++ +++.+++ ++. +++.++..++.+..... ....+++|.|+
T Consensus 21 ~~gg~~VD~T~G~GGHS~~il~~~-g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~g~~~vDgIL 94 (285)
T 1wg8_A 21 RPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAALGVERVDGIL 94 (285)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHHTTCSCEEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHCC-CEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHHcCCCCcCEEE
Confidence 467899999999999999998774 4999999999 9999887 533 46899988876543110 01225799999
Q ss_pred Ecc
Q 046623 130 MSD 132 (218)
Q Consensus 130 ~~~ 132 (218)
++.
T Consensus 95 ~DL 97 (285)
T 1wg8_A 95 ADL 97 (285)
T ss_dssp EEC
T ss_pred eCC
Confidence 743
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.63 E-value=5.2e-05 Score=63.11 Aligned_cols=108 Identities=15% Similarity=0.082 Sum_probs=70.5
Q ss_pred CCeEEEECCCCCHHHHHHHHh------------C-----CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC
Q 046623 54 NKSVLELGAGAGLPGLTAARL------------G-----ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD 115 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~------------~-----~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 115 (218)
.-+|+|+||++|..++.+... + ..+|+..|... ....+.+.+....-.....++.+..+..-
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 457999999999766654211 1 14789999988 77777666543211012355555444332
Q ss_pred ccccccCCCCcEEEEcccccCCcc---------------------------------hHHHHHHHHHHhcCCCceEEEEE
Q 046623 116 LSQLSELGEFDMVIMSDVFYDPEE---------------------------------MVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 116 ~~~~~~~~~~D~Iv~~~~~~~~~~---------------------------------~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
....+.+++|+|+++..+|+..+ ...+++..++-|+|||++++...
T Consensus 132 -~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 132 -GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp -SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred -hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 23348899999999999887422 23458888999999995555443
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0014 Score=53.64 Aligned_cols=119 Identities=12% Similarity=0.015 Sum_probs=78.8
Q ss_pred eEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccc
Q 046623 56 SVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVF 134 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~ 134 (218)
+||||.||.|.+++.+.+.|..-+.++|+++ +.+.-+.|. + ..++.+|+.+.... ....+|+++.++|+
T Consensus 2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~------~-~~~~~~DI~~i~~~---~~~~~D~l~ggpPC 71 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH------S-AKLIKGDISKISSD---EFPKCDGIIGGPPS 71 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC------C-SEEEESCGGGCCGG---GSCCCSEEECCCCG
T ss_pred eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC------C-CCcccCChhhCCHh---hCCcccEEEecCCC
Confidence 7999999999999999888886788999999 998887774 1 35667777665432 23579999999988
Q ss_pred cCC----------cchHHHHHHH---HHHhcCCCceEEEEEeec------cCChHHHHHHHHHhCCcEEEEE
Q 046623 135 YDP----------EEMVGLGKTL---KRVCGTGRHTVVWAVSEV------RTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 135 ~~~----------~~~~~~l~~~---~~lL~~gG~~~i~~~~~~------~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
... +....++... .+.++|. .+++=.... .......+..+ .+.|+.+...
T Consensus 72 Q~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk--~~~~ENV~gl~~~~~~~~~~~i~~~l-~~~GY~v~~~ 140 (331)
T 3ubt_Y 72 QSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKGMMAQRHNKAVQEFIQEF-DNAGYDVHII 140 (331)
T ss_dssp GGTEETTEECCTTCGGGHHHHHHHHHHHHHCCS--EEEEEECCGGGGCTTSHHHHHHHHHH-HHHTEEEEEE
T ss_pred CCcCCCCCccCCCCchhHHHHHHHHHHhccCCe--EEEeeeecccccccccchhhhhhhhh-ccCCcEEEEE
Confidence 531 1222344433 3346773 344433221 12244555555 7888877554
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0041 Score=51.03 Aligned_cols=140 Identities=13% Similarity=0.037 Sum_probs=85.2
Q ss_pred CCeEEEECCCCCHHHHHHHHhCC--CeE-EEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 54 NKSVLELGAGAGLPGLTAARLGA--TRV-VLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~~--~~v-~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..+++|+.||.|.+++.+.+.|. ..+ .++|+++ +.+..+.|+.. . +...|+.+...... +...+|+++
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~------~-~~~~DI~~~~~~~i-~~~~~Dil~ 81 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE------E-VQVKNLDSISIKQI-ESLNCNTWF 81 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC------C-CBCCCTTTCCHHHH-HHTCCCEEE
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC------C-cccCChhhcCHHHh-ccCCCCEEE
Confidence 45899999999999999988874 456 7999999 99888888632 1 44566665543222 223799999
Q ss_pred EcccccCC------------cchHHHHHHHHH-HhcCC---CceEEEEEeecc---CChHHHHHHHHHhCCcEEEEEEcc
Q 046623 130 MSDVFYDP------------EEMVGLGKTLKR-VCGTG---RHTVVWAVSEVR---TRTGDCLHELIMSQGFRVIELTCQ 190 (218)
Q Consensus 130 ~~~~~~~~------------~~~~~~l~~~~~-lL~~g---G~~~i~~~~~~~---~~~~~~~~~~~~~~gf~~~~~~~~ 190 (218)
.++|+... +....++..+.+ +++.- -..+++-....- ......++.+ ++.|+.+...-+.
T Consensus 82 ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~~~~~~~i~~~l-~~~GY~v~~~vl~ 160 (327)
T 3qv2_A 82 MSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKESLVFKEIYNIL-IKNQYYIKDIICS 160 (327)
T ss_dssp ECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGGSHHHHHHHHHH-HHTTCEEEEEEEC
T ss_pred ecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcChHHHHHHHHHH-HhCCCEEEEEEEe
Confidence 99887433 223356666666 55421 133444222211 1233344444 8889887655222
Q ss_pred ----CCCCCCCceeEE
Q 046623 191 ----LGGGCPEAFAVY 202 (218)
Q Consensus 191 ----~~~~~~~~~~l~ 202 (218)
--|..+.+..++
T Consensus 161 a~~yGvPQ~R~R~fiv 176 (327)
T 3qv2_A 161 PIDIGIPNSRTRYYVM 176 (327)
T ss_dssp GGGGTCSBCCCEEEEE
T ss_pred HHHcCCCccceEEEEE
Confidence 233455555553
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00087 Score=54.39 Aligned_cols=171 Identities=12% Similarity=0.031 Sum_probs=89.2
Q ss_pred eEEEEcCeEEEEEeccCcCCCCccccc-----cccc-cchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHH----H
Q 046623 4 REIEIAGNSIIIQELDNVCDSVTGRPL-----TGAW-LWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAA----R 73 (218)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~-~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~----~ 73 (218)
+.+...|++.|+.+.. |+...-... .+.+ +-.......++-. .+.-+|||+|-|+|.-.+... +
T Consensus 47 eIi~T~DGS~Tl~s~~--f~e~YhS~~~GAl~Es~hVFi~~~~L~~r~~~----~~~~~IlE~GFGTGLNfl~t~~~~~~ 120 (308)
T 3vyw_A 47 EIADTADGSKTLIHKT--YGEPYHSQTAGAIRESLYKFVRPSRILEKAKE----RKVIRILDVGFGLGYNLAVALKHLWE 120 (308)
T ss_dssp EEEECTTSCEEEEETT--TTEESSCTTTCHHHHHHHHTHHHHTHHHHHHH----CSEEEEEEECCTTSHHHHHHHHHHHH
T ss_pred eeEECCCCCcCcccCc--cCCccCCCCCcHHHHHHHHHhccCCchHHhcC----CCCcEEEEeCCCccHHHHHHHHHHHH
Confidence 3567899999998853 332211100 1111 1111212222211 233589999999997554331 2
Q ss_pred hCC-C--eEEEecCcc-h--------HHHHHHHHHHh-----CCCCceEEEEeecCCCCccccccCCCCcEEEEcccccC
Q 046623 74 LGA-T--RVVLTDVKP-L--------LPGLINNVEAN-----GLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYD 136 (218)
Q Consensus 74 ~~~-~--~v~~~D~~~-~--------~~~a~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~ 136 (218)
... . +++.+|..+ . ...+.+.+... +-.-.+++..+|...... +. ....+|+++. |.|..
T Consensus 121 ~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~~l~-~l-~~~~~Da~fl-DgFsP 197 (308)
T 3vyw_A 121 VNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARKRIK-EV-ENFKADAVFH-DAFSP 197 (308)
T ss_dssp HCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHHHGG-GC-CSCCEEEEEE-CCSCT
T ss_pred hCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHHHHh-hh-cccceeEEEe-CCCCc
Confidence 222 2 566777532 1 12222222111 111123455555543321 11 2347999998 55543
Q ss_pred Ccc----hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEcc
Q 046623 137 PEE----MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQ 190 (218)
Q Consensus 137 ~~~----~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~ 190 (218)
... -.++++.++++++||| .+.++ .....++..+...||.+.++|-.
T Consensus 198 ~kNPeLWs~e~f~~l~~~~~pgg--~laTY-----taag~VRR~L~~aGF~V~k~~G~ 248 (308)
T 3vyw_A 198 YKNPELWTLDFLSLIKERIDEKG--YWVSY-----SSSLSVRKSLLTLGFKVGSSREI 248 (308)
T ss_dssp TTSGGGGSHHHHHHHHTTEEEEE--EEEES-----CCCHHHHHHHHHTTCEEEEEECC
T ss_pred ccCcccCCHHHHHHHHHHhCCCc--EEEEE-----eCcHHHHHHHHHCCCEEEecCCC
Confidence 322 3689999999999999 33322 22345555559999999999644
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0015 Score=53.83 Aligned_cols=137 Identities=12% Similarity=-0.027 Sum_probs=83.4
Q ss_pred CeEEEECCCCCHHHHHHHHhCC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 55 KSVLELGAGAGLPGLTAARLGA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
.+++|+.||.|.+++.+...|. ..+.++|+++ +.+.-+.|+.. ..+...|+.+...... +...+|+++.+
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~------~~~~~~DI~~~~~~~~-~~~~~D~l~gg 76 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE------TNLLNRNIQQLTPQVI-KKWNVDTILMS 76 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECCCGGGCCHHHH-HHTTCCEEEEC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC------CceeccccccCCHHHh-ccCCCCEEEec
Confidence 3899999999999999988875 4688999999 88888777632 3455667665543222 22369999999
Q ss_pred ccccCC---------c-chHHHHHHHHHHh---c-CCCceEEEEEeeccC----ChHHHHHHHHHhCCcEEEEEEccC--
Q 046623 132 DVFYDP---------E-EMVGLGKTLKRVC---G-TGRHTVVWAVSEVRT----RTGDCLHELIMSQGFRVIELTCQL-- 191 (218)
Q Consensus 132 ~~~~~~---------~-~~~~~l~~~~~lL---~-~gG~~~i~~~~~~~~----~~~~~~~~~~~~~gf~~~~~~~~~-- 191 (218)
+|+... . ....++..+.+++ + | ..+++ .+-..- .....++.+ ++.|+.+...-+..
T Consensus 77 pPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P--~~~vl-ENV~gl~~~~~~~~i~~~l-~~~GY~v~~~vl~a~~ 152 (333)
T 4h0n_A 77 PPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNV--DYILM-ENVKGFENSTVRNLFIDKL-KECNFIYQEFLLCPST 152 (333)
T ss_dssp CCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTC--CEEEE-EECTTGGGSHHHHHHHHHH-HHTTEEEEEEEECTTT
T ss_pred CCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCC--CEEEE-ecchhhhhhhHHHHHHHHH-HhCCCeEEEEEecHHH
Confidence 987531 1 1223444444554 3 5 23333 333211 133444444 88998886653322
Q ss_pred --CCCCCCceeEE
Q 046623 192 --GGGCPEAFAVY 202 (218)
Q Consensus 192 --~~~~~~~~~l~ 202 (218)
-|..+.+..+.
T Consensus 153 ~GvPQ~R~R~fiv 165 (333)
T 4h0n_A 153 VGVPNSRLRYYCT 165 (333)
T ss_dssp TTCSCCCCEEEEE
T ss_pred cCCCccceEEEEE
Confidence 33455555553
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0005 Score=55.72 Aligned_cols=77 Identities=19% Similarity=0.088 Sum_probs=57.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCe--EEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATR--VVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~--v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.+.+++|+.||.|.+++.+.+.|... +.++|+++ +.+..+.|.. ...+...|+.+.........+.+|+++
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~i~~~~~~Dll~ 88 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKHIQEWGPFDLVI 88 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHHHHHTCCCSEEE
T ss_pred CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHHhcccCCcCEEE
Confidence 45589999999999999998888754 69999999 8887776642 245667777765543322235799999
Q ss_pred Eccccc
Q 046623 130 MSDVFY 135 (218)
Q Consensus 130 ~~~~~~ 135 (218)
.++|+.
T Consensus 89 ggpPCQ 94 (295)
T 2qrv_A 89 GGSPCN 94 (295)
T ss_dssp ECCCCG
T ss_pred ecCCCc
Confidence 998874
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00034 Score=71.33 Aligned_cols=100 Identities=16% Similarity=0.101 Sum_probs=49.0
Q ss_pred CCCeEEEECCCCCHHHHHHH-HhC-----CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCC
Q 046623 53 QNKSVLELGAGAGLPGLTAA-RLG-----ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~-~~~-----~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
+..+|||+|+|+|.....+. ..+ ..+++.+|+++ +.+.+++.++... +.....|..+.. .....+|
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~~~~~---~~~~~~y 1312 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDPANPA---PGSLGKA 1312 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCSSCCC---C-----C
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----cccccccccccc---cCCCCce
Confidence 45699999999997654432 211 23799999999 8888888775531 332222222210 0023569
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCceEE
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i 159 (218)
|+|++.+++|...+....+.+++++|+|||.+++
T Consensus 1313 dlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~ 1346 (2512)
T 2vz8_A 1313 DLLVCNCALATLGDPAVAVGNMAATLKEGGFLLL 1346 (2512)
T ss_dssp CEEEEECC--------------------CCEEEE
T ss_pred eEEEEcccccccccHHHHHHHHHHhcCCCcEEEE
Confidence 9999999998888889999999999999994443
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0015 Score=54.17 Aligned_cols=58 Identities=16% Similarity=0.097 Sum_probs=47.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
++..|||||+|.|.++..++.. .+.+|+++|+++ .+..+++.. . ..+++++.+|..+.
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRDPYDW 117 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSCTTCH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECCccch
Confidence 4689999999999999999865 356899999999 888887765 2 25689999988544
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0063 Score=51.46 Aligned_cols=61 Identities=18% Similarity=0.110 Sum_probs=47.3
Q ss_pred CCCCeEEEECCCCCHHHHHHH-HhC-C-CeEEEecCcc-hHHHHHHHHHH--hCCC-CceEEEEeecC
Q 046623 52 FQNKSVLELGAGAGLPGLTAA-RLG-A-TRVVLTDVKP-LLPGLINNVEA--NGLG-GRVEVRELVWG 112 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~-~~~-~-~~v~~~D~~~-~~~~a~~~~~~--~~~~-~~~~~~~~d~~ 112 (218)
.++..++|+|++.|..++.++ +.. . .+|+++|+++ ..+.+++|++. |+.. .++.++..-+.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~ 292 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG 292 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence 467899999999999999876 443 2 6999999999 99999999988 4322 45666654443
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0013 Score=53.89 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=41.6
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhC
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANG 99 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~ 99 (218)
..++..|||..||+|+.+..+.+.|. +.+++|+++ .++.+++++...+
T Consensus 250 ~~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~ 298 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNN 298 (323)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSC
T ss_pred CCCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhcc
Confidence 35788999999999999999988875 999999999 9999888875443
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0047 Score=50.65 Aligned_cols=78 Identities=12% Similarity=0.046 Sum_probs=54.6
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc--cccCCCC
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ--LSELGEF 125 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~ 125 (218)
..++..++|..+|.|..+..+++. + ..+|+++|.++ +++.++ ++ ...++.++..++.+..... ....+++
T Consensus 55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~~g~~~~v 129 (347)
T 3tka_A 55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYVAERDLIGKI 129 (347)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHHHHTTCTTCE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHHHhcCCCCcc
Confidence 357889999999999999998754 3 36999999999 998874 33 1356888887765542100 0011368
Q ss_pred cEEEEccc
Q 046623 126 DMVIMSDV 133 (218)
Q Consensus 126 D~Iv~~~~ 133 (218)
|.|+++--
T Consensus 130 DgILfDLG 137 (347)
T 3tka_A 130 DGILLDLG 137 (347)
T ss_dssp EEEEEECS
T ss_pred cEEEECCc
Confidence 98887543
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0039 Score=53.83 Aligned_cols=79 Identities=14% Similarity=0.026 Sum_probs=54.8
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-------------c
Q 046623 54 NKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-------------L 119 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-------------~ 119 (218)
..+++|+.||.|.+++.+.+.|...+.++|+++ +++.-+.|+... ....++..|+.+..... .
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~ 164 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD---PATHHFNEDIRDITLSHQEGVSDEAAAEHIR 164 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC---TTTCEEESCTHHHHCTTCTTSCHHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC---CCcceeccchhhhhhccccccchhhHHhhhh
Confidence 358999999999999999888876689999999 888877775211 12344555654332100 0
Q ss_pred ccCCCCcEEEEccccc
Q 046623 120 SELGEFDMVIMSDVFY 135 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~~ 135 (218)
.....+|+++.++|+.
T Consensus 165 ~~~~~~Dvl~gGpPCQ 180 (482)
T 3me5_A 165 QHIPEHDVLLAGFPCQ 180 (482)
T ss_dssp HHSCCCSEEEEECCCC
T ss_pred hcCCCCCEEEecCCCc
Confidence 1235689999998875
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.012 Score=46.48 Aligned_cols=135 Identities=14% Similarity=0.007 Sum_probs=83.3
Q ss_pred CCeEEEECCCCCHHHHHHHHh--------CCCeEEEecCcc-hH------------------------HHHHHHH-----
Q 046623 54 NKSVLELGAGAGLPGLTAARL--------GATRVVLTDVKP-LL------------------------PGLINNV----- 95 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~--------~~~~v~~~D~~~-~~------------------------~~a~~~~----- 95 (218)
+..|+|+|+-.|..+..++.. ...++++.|.-+ +- +...+.+
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 449999999999888876432 236899988221 11 1122211
Q ss_pred -HHhCC-CCceEEEEeecCCCCcccc--ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeec---cCC
Q 046623 96 -EANGL-GGRVEVRELVWGSDDLSQL--SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV---RTR 168 (218)
Q Consensus 96 -~~~~~-~~~~~~~~~d~~~~~~~~~--~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~---~~~ 168 (218)
+..+. .++++++.+++.+...... .+..++|++.+..-.| ......++.+..+|+||| +|+...-. -+.
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y--~~t~~~le~~~p~l~~GG--vIv~DD~~~~~w~G 225 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLY--EPTKAVLEAIRPYLTKGS--IVAFDELDNPKWPG 225 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCH--HHHHHHHHHHGGGEEEEE--EEEESSTTCTTCTH
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCccc--chHHHHHHHHHHHhCCCc--EEEEcCCCCCCChH
Confidence 12233 3679999988765432211 1345799999854322 334567888889999999 44443321 134
Q ss_pred hHHHHHHHHHhCCcEEEEEEccCC
Q 046623 169 TGDCLHELIMSQGFRVIELTCQLG 192 (218)
Q Consensus 169 ~~~~~~~~~~~~gf~~~~~~~~~~ 192 (218)
..+.+.+.+.+.+..+...|....
T Consensus 226 ~~~A~~ef~~~~~~~i~~~p~~~~ 249 (257)
T 3tos_A 226 ENIAMRKVLGLDHAPLRLLPGRPA 249 (257)
T ss_dssp HHHHHHHHTCTTSSCCEECTTCSC
T ss_pred HHHHHHHHHhhCCCeEEEccCCCC
Confidence 666677776788888888776654
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.2 Score=41.61 Aligned_cols=131 Identities=15% Similarity=0.071 Sum_probs=80.7
Q ss_pred ccccccchhHHHH-HHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCc-eEE
Q 046623 30 LTGAWLWDSALIL-AQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGR-VEV 106 (218)
Q Consensus 30 ~~g~~~w~~~~~l-~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~-~~~ 106 (218)
...+..||.+..+ .+.+... ..+.+||.++.+.|.++..++..+. +.+.-|- +...++.|++.|++... +.+
T Consensus 16 ~~~l~a~da~d~~ll~~~~~~--~~~~~~~~~~d~~gal~~~~~~~~~---~~~~ds~~~~~~~~~n~~~~~~~~~~~~~ 90 (375)
T 4dcm_A 16 VNPLQAWEAADEYLLQQLDDT--EIRGPVLILNDAFGALSCALAEHKP---YSIGDSYISELATRENLRLNGIDESSVKF 90 (375)
T ss_dssp SCSCCSCCHHHHHHHHTTTTC--CCCSCEEEECCSSSHHHHHTGGGCC---EEEESCHHHHHHHHHHHHHTTCCGGGSEE
T ss_pred CCCCCccchHHHHHHHhhhhc--cCCCCEEEECCCCCHHHHhhccCCc---eEEEhHHHHHHHHHHHHHHcCCCccceEe
Confidence 3567889986543 2222221 2456899999999999988865433 4443244 66678899999988642 454
Q ss_pred EEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHH
Q 046623 107 RELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHEL 176 (218)
Q Consensus 107 ~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~ 176 (218)
.. ..+. ....+|+|+..-| -+.......+..+...|++++. +++....+.......+.+
T Consensus 91 ~~--~~~~------~~~~~~~v~~~lp-k~~~~l~~~L~~l~~~l~~~~~--i~~~g~~~~~~~~~~~~l 149 (375)
T 4dcm_A 91 LD--STAD------YPQQPGVVLIKVP-KTLALLEQQLRALRKVVTSDTR--IIAGAKARDIHTSTLELF 149 (375)
T ss_dssp EE--TTSC------CCSSCSEEEEECC-SCHHHHHHHHHHHHTTCCTTSE--EEEEEEGGGCCHHHHHHH
T ss_pred cc--cccc------cccCCCEEEEEcC-CCHHHHHHHHHHHHhhCCCCCE--EEEEecccchHHHHHHHH
Confidence 42 2221 3467999998444 2334556677777777888883 344445455544444444
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.013 Score=47.94 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=42.1
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc----hHHHHHHHHHH
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP----LLPGLINNVEA 97 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~----~~~~a~~~~~~ 97 (218)
-...|.+.+......++..|||..||+|..+..+.+.+. +.+++|+++ .++.+++++..
T Consensus 227 kp~~l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~ 289 (319)
T 1eg2_A 227 KPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQD 289 (319)
T ss_dssp CCHHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHhCCCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHH
Confidence 334444454442335788999999999999999999875 999999997 34555555543
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.59 E-value=0.023 Score=45.73 Aligned_cols=83 Identities=10% Similarity=-0.020 Sum_probs=50.3
Q ss_pred ceEEEEeecCCCCccccccCCCCcEEEEcccccCCcc--------------------hHHHHHHHHHHhcCCCceEEEEE
Q 046623 103 RVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEE--------------------MVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 103 ~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~--------------------~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
.+.++.+|+.+... ..+.++||+|++++|+....+ +..++..+.++|+|||.+++.+.
T Consensus 21 ~~~i~~gD~~~~l~--~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 21 VHRLHVGDAREVLA--SFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp CEEEEESCHHHHHT--TSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCEEEECcHHHHHh--hCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 46788887754211 114578999999998853211 24567788999999995555443
Q ss_pred eec-------c---CChHHHHHHHHHhCCcEEEEE
Q 046623 163 SEV-------R---TRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 163 ~~~-------~---~~~~~~~~~~~~~~gf~~~~~ 187 (218)
... + ......+..++.+.||.....
T Consensus 99 d~~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~~ 133 (297)
T 2zig_A 99 DVAVARRRFGRHLVFPLHADIQVRCRKLGFDNLNP 133 (297)
T ss_dssp CEEEECC----EEEECHHHHHHHHHHHTTCEEEEE
T ss_pred CCccccccCCcccccccHHHHHHHHHHcCCeeecc
Confidence 221 0 012233444458889987654
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.2 Score=45.80 Aligned_cols=42 Identities=17% Similarity=0.064 Sum_probs=34.8
Q ss_pred CCeEEEECCCCCHHHHHHHHhC------CCeEEEecCcc-hHHHHHHHH
Q 046623 54 NKSVLELGAGAGLPGLTAARLG------ATRVVLTDVKP-LLPGLINNV 95 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~------~~~v~~~D~~~-~~~~a~~~~ 95 (218)
..+||||.||.|.++.-+.+.| ..-+.++|+++ |++.-+.|.
T Consensus 212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 4579999999999999886665 23578999999 998888874
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.096 Score=47.12 Aligned_cols=127 Identities=17% Similarity=0.090 Sum_probs=73.3
Q ss_pred CCeEEEECCCCCHHHHHHHHh-----------C--CCeEEEecCcc-hHHHHHHHH--------------HHhCC-----
Q 046623 54 NKSVLELGAGAGLPGLTAARL-----------G--ATRVVLTDVKP-LLPGLINNV--------------EANGL----- 100 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~-----------~--~~~v~~~D~~~-~~~~a~~~~--------------~~~~~----- 100 (218)
..+|+|+|.|+|...+.+.+. . ..+++++|..| ..+.+++.. .....
T Consensus 59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 138 (689)
T 3pvc_A 59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC 138 (689)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence 458999999999876665221 1 14789999866 544444321 11100
Q ss_pred -----C---CceEEEEeecCCCCcccc-ccCCCCcEEEEcccccC---Cc-chHHHHHHHHHHhcCCCceEEEEEeeccC
Q 046623 101 -----G---GRVEVRELVWGSDDLSQL-SELGEFDMVIMSDVFYD---PE-EMVGLGKTLKRVCGTGRHTVVWAVSEVRT 167 (218)
Q Consensus 101 -----~---~~~~~~~~d~~~~~~~~~-~~~~~~D~Iv~~~~~~~---~~-~~~~~l~~~~~lL~~gG~~~i~~~~~~~~ 167 (218)
. ..+++..+|..+...... .....+|.++. |.|.. .+ -...++..+.+++++|| .+...
T Consensus 139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~fl-D~f~p~~np~~w~~~~~~~l~~~~~~g~--~~~t~----- 210 (689)
T 3pvc_A 139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFL-DGFAPAKNPDMWNEQLFNAMARMTRPGG--TFSTF----- 210 (689)
T ss_dssp EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEE-CSSCC--CCTTCSHHHHHHHHHHEEEEE--EEEES-----
T ss_pred eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEE-CCCCCCCChhhhhHHHHHHHHHHhCCCC--EEEec-----
Confidence 0 123444455433321100 01467999998 44421 11 24788999999999988 22221
Q ss_pred ChHHHHHHHHHhCCcEEEEEE
Q 046623 168 RTGDCLHELIMSQGFRVIELT 188 (218)
Q Consensus 168 ~~~~~~~~~~~~~gf~~~~~~ 188 (218)
.....++..+.+.||.+...+
T Consensus 211 ~~~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 211 TAAGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp CCCHHHHHHHHHTTCEEEEEE
T ss_pred cCcHHHHHHHHhCCeEEEecc
Confidence 122345555589999998875
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.33 Score=40.81 Aligned_cols=44 Identities=11% Similarity=-0.026 Sum_probs=35.9
Q ss_pred CCeEEEECCCCCHHHHHHHHhC--CCe----EEEecCcc-hHHHHHHHHHH
Q 046623 54 NKSVLELGAGAGLPGLTAARLG--ATR----VVLTDVKP-LLPGLINNVEA 97 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~--~~~----v~~~D~~~-~~~~a~~~~~~ 97 (218)
..+|+|+.||.|..+..+.+.| ..- |.++|+++ +...-+.|...
T Consensus 10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~ 60 (403)
T 4dkj_A 10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK 60 (403)
T ss_dssp EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence 3589999999999999997766 233 88899999 98888888743
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.083 Score=49.50 Aligned_cols=77 Identities=12% Similarity=0.013 Sum_probs=53.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC------------CCccc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS------------DDLSQ 118 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~------------~~~~~ 118 (218)
...+++||.||.|.+++.+.+.|. .-+.++|+++ +.+.-+.|.. ...++..|+.. .....
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p------~~~~~~~DI~~l~~~~~~~di~~~~~~~ 612 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP------GSTVFTEDCNILLKLVMAGETTNSRGQR 612 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT------TSEEECSCHHHHHHHHHHTCSBCTTCCB
T ss_pred CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC------CCccccccHHHHhhhccchhhhhhhhhh
Confidence 445899999999999999988886 4688999999 8887776642 23444444321 11111
Q ss_pred cccCCCCcEEEEccccc
Q 046623 119 LSELGEFDMVIMSDVFY 135 (218)
Q Consensus 119 ~~~~~~~D~Iv~~~~~~ 135 (218)
....+.+|+|+.++|+.
T Consensus 613 lp~~~~vDll~GGpPCQ 629 (1002)
T 3swr_A 613 LPQKGDVEMLCGGPPCQ 629 (1002)
T ss_dssp CCCTTTCSEEEECCCCT
T ss_pred cccCCCeeEEEEcCCCc
Confidence 11235799999998874
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=94.31 E-value=0.37 Score=39.46 Aligned_cols=107 Identities=14% Similarity=0.035 Sum_probs=64.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcchHHHHHHHHHHhC--------------------CCCceEEEEeec
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKPLLPGLINNVEANG--------------------LGGRVEVRELVW 111 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~a~~~~~~~~--------------------~~~~~~~~~~d~ 111 (218)
+...|+.||||.....-.+... +...++-+|....++.-++.+...+ ...+..++.+|+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 4568999999999888887654 3335555555334444444444431 125688999998
Q ss_pred CCCCc-----cccccCCCCcEEEEcccccC--CcchHHHHHHHHHHhcCCCceEEE
Q 046623 112 GSDDL-----SQLSELGEFDMVIMSDVFYD--PEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 112 ~~~~~-----~~~~~~~~~D~Iv~~~~~~~--~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.+... ......+...++++-.++.+ .+...++++.+.+.. |+|.++++
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~ 231 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISY 231 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEE
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEE
Confidence 87532 11112234566666555544 356778888888776 66633333
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.18 E-value=0.086 Score=42.95 Aligned_cols=82 Identities=12% Similarity=-0.093 Sum_probs=49.3
Q ss_pred ceEEEEeecCCCCccccccCCCCcEEEEcccccCCc--------------chHHHHHHHHHHhcCCCceEEEEEeeccC-
Q 046623 103 RVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPE--------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRT- 167 (218)
Q Consensus 103 ~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~--------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~- 167 (218)
...++.+|...... ..+.+++|+|++++|+.... .+.+.+..+.++|+|+|.+++.+......
T Consensus 14 ~~~ii~gD~~~~l~--~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g 91 (323)
T 1boo_A 14 NGSMYIGDSLELLE--SFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKG 91 (323)
T ss_dssp SEEEEESCHHHHGG--GSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETT
T ss_pred CceEEeCcHHHHHh--hCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCC
Confidence 35667766543211 11467899999988875431 46788888999999999444443322101
Q ss_pred -------ChHHHHHHHHHhCCcEEEEE
Q 046623 168 -------RTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 168 -------~~~~~~~~~~~~~gf~~~~~ 187 (218)
.....+. +++..||.....
T Consensus 92 ~~~~~~~~~~~i~~-~~~~~Gf~~~~~ 117 (323)
T 1boo_A 92 VPARSIYNFRVLIR-MIDEVGFFLAED 117 (323)
T ss_dssp EEEECCHHHHHHHH-HHHTTCCEEEEE
T ss_pred CcccccchHHHHHH-HHHhCCCEEEEE
Confidence 1222333 337889987654
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.23 Score=44.50 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=38.8
Q ss_pred CCCCcEEEEcccccCC--c--chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEE
Q 046623 122 LGEFDMVIMSDVFYDP--E--EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELT 188 (218)
Q Consensus 122 ~~~~D~Iv~~~~~~~~--~--~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~ 188 (218)
...+|.++. |.|... + -..+++..+.+++++|| .+... .....++..+.+.||.+...+
T Consensus 177 ~~~~d~~~~-D~f~p~~np~~w~~~~~~~l~~~~~~g~--~~~t~-----~~~~~vr~~L~~aGf~v~~~~ 239 (676)
T 3ps9_A 177 NQKVDAWFL-DGFAPAKNPDMWTQNLFNAMARLARPGG--TLATF-----TSAGFVRRGLQDAGFTMQKRK 239 (676)
T ss_dssp TTCEEEEEE-CCSCGGGCGGGSCHHHHHHHHHHEEEEE--EEEES-----CCCHHHHHHHHHHTCEEEEEE
T ss_pred CCcccEEEE-CCCCCcCChhhhhHHHHHHHHHHhCCCC--EEEec-----cCcHHHHHHHHhCCeEEEecc
Confidence 367999998 444321 1 24778999999999998 22221 112345555588999998875
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.17 Score=48.81 Aligned_cols=78 Identities=12% Similarity=0.013 Sum_probs=52.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecC------------CCCccc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWG------------SDDLSQ 118 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~------------~~~~~~ 118 (218)
+..+++||.||.|.+++.+.+.|. .-+.++|+++ +++.-+.|.. ...+...|+. ......
T Consensus 850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p------~~~~~~~DI~~l~~~~~~gdi~~~~~~~ 923 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNP------GTTVFTEDCNVLLKLVMAGEVTNSLGQR 923 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCT------TSEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC------CCcEeeccHHHHhHhhhccchhhhhhhh
Confidence 345899999999999999988885 4588999999 8888777742 2334433322 110001
Q ss_pred cccCCCCcEEEEcccccC
Q 046623 119 LSELGEFDMVIMSDVFYD 136 (218)
Q Consensus 119 ~~~~~~~D~Iv~~~~~~~ 136 (218)
....+.+|+|+.++|+..
T Consensus 924 lp~~~~vDvl~GGpPCQ~ 941 (1330)
T 3av4_A 924 LPQKGDVEMLCGGPPCQG 941 (1330)
T ss_dssp CCCTTTCSEEEECCCCTT
T ss_pred ccccCccceEEecCCCcc
Confidence 112347899999998853
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.25 E-value=0.19 Score=39.51 Aligned_cols=63 Identities=5% Similarity=0.041 Sum_probs=39.6
Q ss_pred cCCCCcEEEEcccccCC-c-------------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEE
Q 046623 121 ELGEFDMVIMSDVFYDP-E-------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIE 186 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~-~-------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~ 186 (218)
+.+++|+|++++|+... . .....++.+.++|+++|. +++... ......+..++.+.||....
T Consensus 20 ~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~--i~v~~~--d~~~~~~~~~~~~~gf~~~~ 95 (260)
T 1g60_A 20 ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGS--LYIFNT--PFNCAFICQYLVSKGMIFQN 95 (260)
T ss_dssp CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEE--EEEEEC--HHHHHHHHHHHHHTTCEEEE
T ss_pred cccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeE--EEEEcC--cHHHHHHHHHHHhhccceeE
Confidence 44689999998777543 1 345677788899999993 333322 12223333344788998766
Q ss_pred E
Q 046623 187 L 187 (218)
Q Consensus 187 ~ 187 (218)
.
T Consensus 96 ~ 96 (260)
T 1g60_A 96 W 96 (260)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.08 E-value=0.17 Score=41.15 Aligned_cols=94 Identities=20% Similarity=0.128 Sum_probs=58.1
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-ccCCCC
Q 046623 51 DFQNKSVLELGAG-AGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-SELGEF 125 (218)
Q Consensus 51 ~~~~~~vLDlG~G-~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-~~~~~~ 125 (218)
..++.+||-.|+| .|..++.+++. |+ +|+++|.++ ..+.+++ .|.. .++ |..+....+ . ...+.+
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~i--~~~~~~~~~~~~~~~g~~ 233 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR----LGAE---VAV--NARDTDPAAWLQKEIGGA 233 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS---EEE--ETTTSCHHHHHHHHHSSE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH----cCCC---EEE--eCCCcCHHHHHHHhCCCC
Confidence 3578899999987 36777777654 55 999999988 7776643 3432 222 222222111 1 112368
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|+++-... ....++.+.++|+++|+++++
T Consensus 234 d~vid~~g------~~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 234 HGVLVTAV------SPKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp EEEEESSC------CHHHHHHHHHHEEEEEEEEEC
T ss_pred CEEEEeCC------CHHHHHHHHHHhccCCEEEEe
Confidence 88875321 245778888999999955444
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.86 E-value=0.2 Score=41.27 Aligned_cols=95 Identities=23% Similarity=0.179 Sum_probs=57.7
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-cccc--cCCC
Q 046623 51 DFQNKSVLELGAGA-GLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQLS--ELGE 124 (218)
Q Consensus 51 ~~~~~~vLDlG~G~-G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~--~~~~ 124 (218)
..++.+||-+|+|. |..++.+++ .|+.+|+++|.++ ..+.+++ .|.. .++ |..+... +... ..+.
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi--~~~~~~~~~~~~~~~~gg 258 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGAT---HVI--NSKTQDPVAAIKEITDGG 258 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCS---EEE--ETTTSCHHHHHHHHTTSC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCC---EEe--cCCccCHHHHHHHhcCCC
Confidence 35788999999864 566666664 5665799999988 7777653 2422 222 2222211 1111 1237
Q ss_pred CcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 125 FDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+|+|+-.-. ....++.+.++|+++|+++++
T Consensus 259 ~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 259 VNFALESTG------SPEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp EEEEEECSC------CHHHHHHHHHTEEEEEEEEEC
T ss_pred CcEEEECCC------CHHHHHHHHHHHhcCCEEEEe
Confidence 999884211 135678888999999955544
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=0.49 Score=38.29 Aligned_cols=100 Identities=11% Similarity=0.051 Sum_probs=60.0
Q ss_pred CeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCC--CCceEEEEeecCCCCccccccC-----CCCcE
Q 046623 55 KSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGL--GGRVEVRELVWGSDDLSQLSEL-----GEFDM 127 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~-----~~~D~ 127 (218)
..|++||||-=.....+......+++=+|....++..++.+...+. ..+..++.+|+.+ .+...... +..-+
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt~ 182 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSARTA 182 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCEE
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCEE
Confidence 5799999996555443331112477777743367666666665432 3567888899887 32221111 22335
Q ss_pred EEEcccccCC--cchHHHHHHHHHHhcCCC
Q 046623 128 VIMSDVFYDP--EEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 128 Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG 155 (218)
+++-.++++. +....+++.+...+.||+
T Consensus 183 ~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs 212 (310)
T 2uyo_A 183 WLAEGLLMYLPATAQDGLFTEIGGLSAVGS 212 (310)
T ss_dssp EEECSCGGGSCHHHHHHHHHHHHHTCCTTC
T ss_pred EEEechHhhCCHHHHHHHHHHHHHhCCCCe
Confidence 5555555543 456778888888777877
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=92.33 E-value=0.75 Score=38.43 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=30.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--------CCCeEEEecCcc-hHHHHHHHH
Q 046623 53 QNKSVLELGAGAGLPGLTAARL--------GATRVVLTDVKP-LLPGLINNV 95 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~--------~~~~v~~~D~~~-~~~~a~~~~ 95 (218)
.+..|+|+|+|.|.++..+.+. ...+++.+|+|+ ..+..++.+
T Consensus 80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L 131 (387)
T 1zkd_A 80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL 131 (387)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHh
Confidence 3457999999999998766321 224899999999 555444444
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=91.97 E-value=1.3 Score=36.06 Aligned_cols=95 Identities=21% Similarity=0.165 Sum_probs=56.5
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC---CC-ccccc--c
Q 046623 51 DFQNKSVLELGAGA-GLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS---DD-LSQLS--E 121 (218)
Q Consensus 51 ~~~~~~vLDlG~G~-G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~-~~~~~--~ 121 (218)
..++.+||-+|+|. |..++.+++ .|+.+|+++|.++ ..+.+++ .|.. .++ |... .. ..... .
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi--~~~~~~~~~~~~~i~~~~ 239 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD---LVL--QISKESPQEIARKVEGQL 239 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEE--ECSSCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEE--cCcccccchHHHHHHHHh
Confidence 35788999999863 556666665 4555899999888 7766643 3432 222 2220 11 00110 1
Q ss_pred CCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 122 LGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 122 ~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
...+|+|+-.-. ....+....++|+++|+++.+
T Consensus 240 ~~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 240 GCKPEVTIECTG------AEASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp TSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEEC
T ss_pred CCCCCEEEECCC------ChHHHHHHHHHhcCCCEEEEE
Confidence 157999985221 134677788899999955544
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.90 E-value=1.3 Score=36.05 Aligned_cols=94 Identities=24% Similarity=0.144 Sum_probs=55.7
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC-CC-ccccc---c-
Q 046623 51 DFQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS-DD-LSQLS---E- 121 (218)
Q Consensus 51 ~~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~---~- 121 (218)
..++.+||-.|+| .|..++.+++ .|+ +|+++|.++ ..+.+++ .+.. .++ |..+ .. ..... .
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~~--~~~~~~~~~~~i~~~~~~ 235 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN----CGAD---VTL--VVDPAKEEESSIIERIRS 235 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS---EEE--ECCTTTSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCC---EEE--cCcccccHHHHHHHHhcc
Confidence 3578899999975 2555555554 455 699999888 7766643 3432 222 2221 11 11111 1
Q ss_pred --CCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 122 --LGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 122 --~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
...+|+|+-.-. ....++.+.++|+++|+++.+
T Consensus 236 ~~g~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 236 AIGDLPNVTIDCSG------NEKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp HSSSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEEC
T ss_pred ccCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEE
Confidence 257999985221 134677788899999955444
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=91.33 E-value=0.3 Score=39.84 Aligned_cols=88 Identities=16% Similarity=0.057 Sum_probs=54.0
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 51 DFQNKSVLELGAGA-GLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 51 ~~~~~~vLDlG~G~-G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
..++.+||=.|+|. |..++.+++ .|+ +|++++.++ ..+.+++ .|.. .++ .+ .. . ....+|+
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~v~-~~---~~--~--~~~~~D~ 237 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS----MGVK---HFY-TD---PK--Q--CKEELDF 237 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH----TTCS---EEE-SS---GG--G--CCSCEEE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh----cCCC---eec-CC---HH--H--HhcCCCE
Confidence 35788999999863 555666664 455 999999998 7777654 3432 222 11 11 1 1227999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|+- +.... ..+..+.++|+++|+++++
T Consensus 238 vid--~~g~~----~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 238 IIS--TIPTH----YDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp EEE--CCCSC----CCHHHHHTTEEEEEEEEEC
T ss_pred EEE--CCCcH----HHHHHHHHHHhcCCEEEEE
Confidence 884 22221 2456677889999955544
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=91.13 E-value=0.69 Score=38.12 Aligned_cols=95 Identities=24% Similarity=0.214 Sum_probs=56.9
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-ccc-----c
Q 046623 51 DFQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QLS-----E 121 (218)
Q Consensus 51 ~~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~-----~ 121 (218)
..++.+||=.|+| .|..++.+++ .|+.+|+++|.++ ..+.+++ .|.. .++ |..+.... ... .
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi--~~~~~~~~~~i~~~~~~~ 250 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGAT---ATV--DPSAGDVVEAIAGPVGLV 250 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCS---EEE--CTTSSCHHHHHHSTTSSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCC---EEE--CCCCcCHHHHHHhhhhcc
Confidence 3578899999985 2555555564 4555899999988 7766654 3432 222 22222111 110 1
Q ss_pred CCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 122 LGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 122 ~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.+.+|+|+-. .. ....++.+.++|+++|+++++
T Consensus 251 ~gg~Dvvid~--~G----~~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 251 PGGVDVVIEC--AG----VAETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp TTCEEEEEEC--SC----CHHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEEC--CC----CHHHHHHHHHHhccCCEEEEE
Confidence 2479998842 11 145678888999999955544
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.08 E-value=1 Score=36.92 Aligned_cols=93 Identities=16% Similarity=0.154 Sum_probs=57.4
Q ss_pred CCCeEEEEC-CC-CCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccc--cCCCCc
Q 046623 53 QNKSVLELG-AG-AGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLS--ELGEFD 126 (218)
Q Consensus 53 ~~~~vLDlG-~G-~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~D 126 (218)
++.+||=.| +| .|..++.+++. +..+|++++.++ ..+.+++ .|.. .++ |..+....... ..+.+|
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad---~vi--~~~~~~~~~v~~~~~~g~D 241 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH---HVI--DHSKPLAAEVAALGLGAPA 241 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS---EEE--CTTSCHHHHHHTTCSCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC---EEE--eCCCCHHHHHHHhcCCCce
Confidence 577899988 44 56777777775 566999999988 7776643 3432 222 22221111111 224789
Q ss_pred EEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+|+-.- .....++.+.++|+++|+++++
T Consensus 242 vvid~~------g~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 242 FVFSTT------HTDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEEECS------CHHHHHHHHHHHSCTTCEEEEC
T ss_pred EEEECC------CchhhHHHHHHHhcCCCEEEEE
Confidence 887421 1245778888999999955544
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=90.95 E-value=0.95 Score=37.32 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=56.8
Q ss_pred CCCCCeEEEECCC-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecC--CCCcc-cc--ccC
Q 046623 51 DFQNKSVLELGAG-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWG--SDDLS-QL--SEL 122 (218)
Q Consensus 51 ~~~~~~vLDlG~G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~--~~~~~-~~--~~~ 122 (218)
..++.+||=+|+| .|..++.++ ..|+.+|+++|.++ .++.++ ..|.. .++ |.. +.... .. ...
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~----~lGa~---~vi--~~~~~~~~~~~~i~~~~~ 261 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK----KFGVN---EFV--NPKDHDKPIQEVIVDLTD 261 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH----TTTCC---EEE--CGGGCSSCHHHHHHHHTT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCc---EEE--ccccCchhHHHHHHHhcC
Confidence 3578899999985 355555555 45666899999988 777664 33432 222 221 11111 11 122
Q ss_pred CCCcEEEEcccccCCcchHHHHHHHHHHhcCC-CceEEE
Q 046623 123 GEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTG-RHTVVW 160 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~g-G~~~i~ 160 (218)
+.+|+|+-. .. ....++.+.++++++ |+++++
T Consensus 262 gg~D~vid~--~g----~~~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 262 GGVDYSFEC--IG----NVSVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp SCBSEEEEC--SC----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred CCCCEEEEC--CC----CHHHHHHHHHHhhccCCEEEEE
Confidence 479999842 11 245678888999997 854444
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=90.62 E-value=1.5 Score=35.99 Aligned_cols=95 Identities=17% Similarity=0.179 Sum_probs=56.7
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC--CCc-cccc--cC
Q 046623 51 DFQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS--DDL-SQLS--EL 122 (218)
Q Consensus 51 ~~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~-~~~~--~~ 122 (218)
..++.+||=+|+| .|..++.+++ .|+.+|+++|.++ ..+.+++ .|.. .++ |..+ ... +... ..
T Consensus 189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi--~~~~~~~~~~~~i~~~t~ 259 (373)
T 1p0f_A 189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT---ECL--NPKDYDKPIYEVICEKTN 259 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS---EEE--CGGGCSSCHHHHHHHHTT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---EEE--ecccccchHHHHHHHHhC
Confidence 3578899999975 3555555554 5665899999988 7777653 3432 222 2221 111 1110 12
Q ss_pred CCCcEEEEcccccCCcchHHHHHHHHHHhcCC-CceEEE
Q 046623 123 GEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTG-RHTVVW 160 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~g-G~~~i~ 160 (218)
+.+|+|+-. .. ....+..+.++++++ |+++.+
T Consensus 260 gg~Dvvid~--~g----~~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 260 GGVDYAVEC--AG----RIETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp SCBSEEEEC--SC----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred CCCCEEEEC--CC----CHHHHHHHHHHHhcCCCEEEEE
Confidence 479999842 11 135677888999999 955444
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=90.60 E-value=0.38 Score=39.08 Aligned_cols=81 Identities=6% Similarity=-0.094 Sum_probs=45.6
Q ss_pred eEEE-EeecCCCCccccccCCCCcEEEEcccccCC-------c----chHHHHHHHHHHhcCCCceEEEEEeecc-----
Q 046623 104 VEVR-ELVWGSDDLSQLSELGEFDMVIMSDVFYDP-------E----EMVGLGKTLKRVCGTGRHTVVWAVSEVR----- 166 (218)
Q Consensus 104 ~~~~-~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~-------~----~~~~~l~~~~~lL~~gG~~~i~~~~~~~----- 166 (218)
..++ .+|...... ..+.+++|+|++.+|+... . .+...+..+.++|+|+|.+++.+.....
T Consensus 39 ~~l~i~gD~l~~L~--~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~~~~~~ 116 (319)
T 1eg2_A 39 RHVYDVCDCLDTLA--KLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGS 116 (319)
T ss_dssp EEEEEECCHHHHHH--TSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTB
T ss_pred ceEEECCcHHHHHH--hCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCccccccccc
Confidence 4555 666543211 1145689999998877532 1 3566777788999999944333322111
Q ss_pred CChHHHHHHHHHhCC-cEEEEE
Q 046623 167 TRTGDCLHELIMSQG-FRVIEL 187 (218)
Q Consensus 167 ~~~~~~~~~~~~~~g-f~~~~~ 187 (218)
.........+ ...| |.....
T Consensus 117 ~~l~~l~~~i-~~~G~~~~~~~ 137 (319)
T 1eg2_A 117 GDLISIISHM-RQNSKMLLANL 137 (319)
T ss_dssp CCHHHHHHHH-HHHCCCEEEEE
T ss_pred ccHHHHHHHH-hCcccceeEEE
Confidence 1124444444 5556 776554
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=90.23 E-value=0.97 Score=35.41 Aligned_cols=80 Identities=18% Similarity=0.185 Sum_probs=57.8
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc------cc
Q 046623 51 DFQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ------LS 120 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~ 120 (218)
+++++++|==|++.|. .+..+++.|+ +|+.+|.++ .++.+.+.++..+ .++.++.+|+.+...-+ ..
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~ 80 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFE 80 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4678888888887774 3445567777 899999999 8888888887776 44888899987654211 11
Q ss_pred cCCCCcEEEEccc
Q 046623 121 ELGEFDMVIMSDV 133 (218)
Q Consensus 121 ~~~~~D~Iv~~~~ 133 (218)
..++.|+++.|.-
T Consensus 81 ~~G~iDiLVNNAG 93 (254)
T 4fn4_A 81 TYSRIDVLCNNAG 93 (254)
T ss_dssp HHSCCCEEEECCC
T ss_pred HcCCCCEEEECCc
Confidence 3378999997653
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=90.13 E-value=1.1 Score=35.20 Aligned_cols=81 Identities=23% Similarity=0.268 Sum_probs=56.7
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc------cc
Q 046623 51 DFQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ------LS 120 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~ 120 (218)
+++++++|=-|++.|. .+..+++.|+ +|+.+|.++ .++.+.+.+...+ .++..+.+|+.+...-+ ..
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDA 82 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 4678888887877663 3444567777 899999998 8877777777766 34788888887653111 12
Q ss_pred cCCCCcEEEEcccc
Q 046623 121 ELGEFDMVIMSDVF 134 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~ 134 (218)
..++.|+++.|.-.
T Consensus 83 ~~G~iDiLVNNAG~ 96 (255)
T 4g81_D 83 EGIHVDILINNAGI 96 (255)
T ss_dssp TTCCCCEEEECCCC
T ss_pred HCCCCcEEEECCCC
Confidence 34689999976544
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=90.01 E-value=3.5 Score=28.56 Aligned_cols=115 Identities=15% Similarity=0.101 Sum_probs=60.2
Q ss_pred CCeEEEECCCC-CH-HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 54 NKSVLELGAGA-GL-PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 54 ~~~vLDlG~G~-G~-~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
..+|+=+|+|. |. ++..+.+.|. .|+.+|.++ .++.+++ .+ +.++.+|..+...-.......+|.+++
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLAHLECAKWLIL 77 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhcCcccCCEEEE
Confidence 34788888863 32 2223345555 899999999 7776553 22 567777765543211112357898887
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
.-+- ......+....+.+.|+. .++... ...+..+.+ .+.|.+....
T Consensus 78 ~~~~---~~~n~~~~~~a~~~~~~~-~iiar~-----~~~~~~~~l-~~~G~d~vi~ 124 (140)
T 3fwz_A 78 TIPN---GYEAGEIVASARAKNPDI-EIIARA-----HYDDEVAYI-TERGANQVVM 124 (140)
T ss_dssp CCSC---HHHHHHHHHHHHHHCSSS-EEEEEE-----SSHHHHHHH-HHTTCSEEEE
T ss_pred ECCC---hHHHHHHHHHHHHHCCCC-eEEEEE-----CCHHHHHHH-HHCCCCEEEC
Confidence 4331 111222333455666766 222222 122333444 6667654443
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.94 E-value=1.7 Score=33.89 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=50.7
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-ccc-----c
Q 046623 52 FQNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQL-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~-----~ 120 (218)
.+++++|=.|+. |.++..+ ++.|. +|+.++.++ ..+.+.+.+...+....+.++.+|+.+... ... .
T Consensus 30 l~~k~vlVTGas-ggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 107 (279)
T 1xg5_A 30 WRDRLALVTGAS-GGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS 107 (279)
T ss_dssp GTTCEEEEESTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 456778877754 4444444 45565 899999988 777666666655544457788888876531 111 0
Q ss_pred cCCCCcEEEEccc
Q 046623 121 ELGEFDMVIMSDV 133 (218)
Q Consensus 121 ~~~~~D~Iv~~~~ 133 (218)
..+.+|+++.+..
T Consensus 108 ~~g~iD~vi~~Ag 120 (279)
T 1xg5_A 108 QHSGVDICINNAG 120 (279)
T ss_dssp HHCCCSEEEECCC
T ss_pred hCCCCCEEEECCC
Confidence 1247999997654
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=89.90 E-value=0.49 Score=38.80 Aligned_cols=98 Identities=19% Similarity=0.071 Sum_probs=57.0
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC-CCc-ccc---ccC
Q 046623 51 DFQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS-DDL-SQL---SEL 122 (218)
Q Consensus 51 ~~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~-~~~---~~~ 122 (218)
..++.+||=+|+| .|..++.+++ .|+..|+++|.++ ..+.+++. .. ..+... .+-.. ... ... ...
T Consensus 177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~----~~~~~~-~~~~~~~~~~~~v~~~t~g 250 (363)
T 3m6i_A 177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP----EVVTHK-VERLSAEESAKKIVESFGG 250 (363)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT----TCEEEE-CCSCCHHHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch----hccccc-ccccchHHHHHHHHHHhCC
Confidence 3578899999985 3555666664 4664599999998 87777654 11 112222 11000 000 001 023
Q ss_pred CCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 123 GEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
..+|+|+- +.. ....+..+.++|+++|+++++
T Consensus 251 ~g~Dvvid--~~g----~~~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 251 IEPAVALE--CTG----VESSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp CCCSEEEE--CSC----CHHHHHHHHHHSCTTCEEEEC
T ss_pred CCCCEEEE--CCC----ChHHHHHHHHHhcCCCEEEEE
Confidence 47999984 211 134677888999999955544
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=89.81 E-value=0.51 Score=37.63 Aligned_cols=77 Identities=13% Similarity=0.131 Sum_probs=44.4
Q ss_pred CCCcEEEEcccc---cCC----cch----HHHHHHHHHHhcCCCceEEEEEeeccC-ChHHHHHHHHHhCCcEEEEE--E
Q 046623 123 GEFDMVIMSDVF---YDP----EEM----VGLGKTLKRVCGTGRHTVVWAVSEVRT-RTGDCLHELIMSQGFRVIEL--T 188 (218)
Q Consensus 123 ~~~D~Iv~~~~~---~~~----~~~----~~~l~~~~~lL~~gG~~~i~~~~~~~~-~~~~~~~~~~~~~gf~~~~~--~ 188 (218)
+++|+|+++-.. ++. .|. .-+++.+..+|+|||.+++-.... .+ ..+.....+ ...|...++ |
T Consensus 205 ~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~Kvygg-aDr~se~lv~~L--aR~F~~Vr~vKP 281 (320)
T 2hwk_A 205 PKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGY-ADRASESIIGAI--ARQFKFSRVCKP 281 (320)
T ss_dssp CCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCC-CSHHHHHHHHHH--HTTEEEEEEECC
T ss_pred CcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecC-CcccHHHHHHHH--HHhcceeeeeCC
Confidence 679999985322 111 111 114455677899999554444322 22 244444444 678888777 5
Q ss_pred ccCCCCCCCceeEEE
Q 046623 189 CQLGGGCPEAFAVYE 203 (218)
Q Consensus 189 ~~~~~~~~~~~~l~~ 203 (218)
...+. ..+.+.+.+
T Consensus 282 ~ASR~-StEvf~La~ 295 (320)
T 2hwk_A 282 KSSLE-ETEVLFVFI 295 (320)
T ss_dssp TTCCS-TTCEEEEEE
T ss_pred CCccc-cceEEEEEE
Confidence 55555 666666644
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.71 E-value=0.88 Score=37.77 Aligned_cols=100 Identities=25% Similarity=0.270 Sum_probs=59.0
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC--ccccc---cC
Q 046623 51 DFQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD--LSQLS---EL 122 (218)
Q Consensus 51 ~~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~---~~ 122 (218)
..++.+||-+|+| .|..++.+++ .|+.+|+++|.++ .++.+++ .|. +++ +..+.. ..... ..
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i--~~~~~~~~~~~v~~~t~g 252 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF----EIA--DLSLDTPLHEQIAALLGE 252 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC----EEE--ETTSSSCHHHHHHHHHSS
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC----cEE--ccCCcchHHHHHHHHhCC
Confidence 3578899999976 3666666665 4655799999988 7777643 342 322 322221 11111 12
Q ss_pred CCCcEEEEccccc---------CCcchHHHHHHHHHHhcCCCceEEE
Q 046623 123 GEFDMVIMSDVFY---------DPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 123 ~~~D~Iv~~~~~~---------~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
..+|+|+-.-.-. +.......++.+.++|+++|+++++
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 253 PEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp SCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 4699998422110 1122345788888999999955443
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.57 E-value=4.2 Score=31.70 Aligned_cols=81 Identities=23% Similarity=0.301 Sum_probs=50.7
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc--hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----
Q 046623 51 DFQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP--LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL----- 119 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~----- 119 (218)
..+++++|=-|++.|. ++..+++.|. +|+.++.+. ..+.+.+.++..+ .++.++.+|+.+...- ..
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~ 104 (271)
T 3v2g_A 28 SLAGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETV 104 (271)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence 3678888888877653 3334466676 788886554 5555555555555 4588888888765311 11
Q ss_pred ccCCCCcEEEEcccc
Q 046623 120 SELGEFDMVIMSDVF 134 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~ 134 (218)
...++.|+++.+.-.
T Consensus 105 ~~~g~iD~lvnnAg~ 119 (271)
T 3v2g_A 105 EALGGLDILVNSAGI 119 (271)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHcCCCcEEEECCCC
Confidence 122479999976543
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.54 E-value=3.6 Score=32.08 Aligned_cols=80 Identities=25% Similarity=0.297 Sum_probs=50.3
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCc------------c-hHHHHHHHHHHhCCCCceEEEEeecCCCC
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVK------------P-LLPGLINNVEANGLGGRVEVRELVWGSDD 115 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~------------~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 115 (218)
.+++++|=-|++.|. ++..+++.|. +|+.+|.+ . .++.+...+...+ .++.++.+|+.+..
T Consensus 8 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~ 84 (287)
T 3pxx_A 8 VQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRA 84 (287)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHH
Confidence 567788888876653 3334456676 89999876 4 5555555555544 45888999987653
Q ss_pred cc-cc-----ccCCCCcEEEEcccc
Q 046623 116 LS-QL-----SELGEFDMVIMSDVF 134 (218)
Q Consensus 116 ~~-~~-----~~~~~~D~Iv~~~~~ 134 (218)
.- .. ...++.|+++.+.-.
T Consensus 85 ~v~~~~~~~~~~~g~id~lv~nAg~ 109 (287)
T 3pxx_A 85 AVSRELANAVAEFGKLDVVVANAGI 109 (287)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 21 10 112579999976544
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=89.20 E-value=0.07 Score=39.82 Aligned_cols=93 Identities=19% Similarity=0.078 Sum_probs=53.9
Q ss_pred CCCCCeEEEECCC--CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-ccc---cC
Q 046623 51 DFQNKSVLELGAG--AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QLS---EL 122 (218)
Q Consensus 51 ~~~~~~vLDlG~G--~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~---~~ 122 (218)
..++++||-.|++ .|.....++ ..|+ +|++++.++ ..+.+++ .+.. .+ .|..+.... ... ..
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~---~~--~d~~~~~~~~~~~~~~~~ 105 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVE---YV--GDSRSVDFADEILELTDG 105 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCS---EE--EETTCSTHHHHHHHHTTT
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC---EE--eeCCcHHHHHHHHHHhCC
Confidence 3577899999953 344444443 4566 899999887 6655432 3321 12 244332211 111 12
Q ss_pred CCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 123 GEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
..+|+++.+.. ...++.+.++|+++|+++.+
T Consensus 106 ~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 106 YGVDVVLNSLA-------GEAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp CCEEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred CCCeEEEECCc-------hHHHHHHHHHhccCCEEEEE
Confidence 36999985321 24677888899999944443
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=89.19 E-value=3.1 Score=32.34 Aligned_cols=80 Identities=20% Similarity=0.309 Sum_probs=49.5
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc--hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----c
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP--LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~ 120 (218)
.+++++|=-|++.|. ++..+++.|. +|+.++.+. ..+.+.+.++..+ .++.++.+|+.+...- .. .
T Consensus 16 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 92 (270)
T 3is3_A 16 LDGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVA 92 (270)
T ss_dssp CTTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 567788877766553 2333456666 888877654 5666666666555 4588889998765311 11 1
Q ss_pred cCCCCcEEEEcccc
Q 046623 121 ELGEFDMVIMSDVF 134 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~ 134 (218)
..++.|+++.+.-.
T Consensus 93 ~~g~id~lvnnAg~ 106 (270)
T 3is3_A 93 HFGHLDIAVSNSGV 106 (270)
T ss_dssp HHSCCCEEECCCCC
T ss_pred HcCCCCEEEECCCC
Confidence 12578999976443
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=89.18 E-value=1.7 Score=35.71 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=56.5
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC--CCc-cccc--cC
Q 046623 51 DFQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS--DDL-SQLS--EL 122 (218)
Q Consensus 51 ~~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~-~~~~--~~ 122 (218)
..++.+||=+|+| .|..++.+++ .|+.+|+++|.++ ..+.+++ .|.. .++ |..+ ... +... ..
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi--~~~~~~~~~~~~v~~~~~ 263 (376)
T 1e3i_A 193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT---DCL--NPRELDKPVQDVITELTA 263 (376)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEE--CGGGCSSCHHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---EEE--ccccccchHHHHHHHHhC
Confidence 3578899999975 3555555564 4555899999988 7776643 3432 222 2221 111 1110 12
Q ss_pred CCCcEEEEcccccCCcchHHHHHHHHHHhcCC-CceEEE
Q 046623 123 GEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTG-RHTVVW 160 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~g-G~~~i~ 160 (218)
+.+|+|+-. .. ....+..+.++++++ |+++++
T Consensus 264 ~g~Dvvid~--~G----~~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 264 GGVDYSLDC--AG----TAQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp SCBSEEEES--SC----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred CCccEEEEC--CC----CHHHHHHHHHHhhcCCCEEEEE
Confidence 479999842 11 135677888999999 955444
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=88.92 E-value=2.4 Score=35.29 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=54.7
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc---ccCC
Q 046623 51 DFQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL---SELG 123 (218)
Q Consensus 51 ~~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~---~~~~ 123 (218)
..++.+||=+|+| .|..++.+++ .|+.+|+++|.++ ..+.+++ .|.. .++ |..+.... .. -...
T Consensus 211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi--~~~~~~~~~~i~~~t~g~ 281 (404)
T 3ip1_A 211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE----LGAD---HVI--DPTKENFVEAVLDYTNGL 281 (404)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCS---EEE--CTTTSCHHHHHHHHTTTC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCC---EEE--cCCCCCHHHHHHHHhCCC
Confidence 3578899999985 3455555554 4555899999988 7776653 3422 222 22222111 11 1123
Q ss_pred CCcEEEEcccccCCcchHHHHHHHHHHh----cCCCceEEE
Q 046623 124 EFDMVIMSDVFYDPEEMVGLGKTLKRVC----GTGRHTVVW 160 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~~~~~~~l~~~~~lL----~~gG~~~i~ 160 (218)
.+|+|+- +. ......+..+.++| +++|+++++
T Consensus 282 g~D~vid--~~---g~~~~~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 282 GAKLFLE--AT---GVPQLVWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp CCSEEEE--CS---SCHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred CCCEEEE--CC---CCcHHHHHHHHHHHHhccCCCcEEEEe
Confidence 6999984 22 22223555566666 999955544
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=88.78 E-value=4 Score=32.19 Aligned_cols=79 Identities=16% Similarity=0.271 Sum_probs=48.8
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc--hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----c
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP--LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~ 120 (218)
.+++++|=-|++.|. ++..+++.|. +|+.++.++ ..+.+.+..+..+ .++.++.+|+.+...- .. .
T Consensus 45 l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 121 (291)
T 3ijr_A 45 LKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVR 121 (291)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence 467788888876553 2333456666 899998876 3444444444444 4588889998765311 10 1
Q ss_pred cCCCCcEEEEccc
Q 046623 121 ELGEFDMVIMSDV 133 (218)
Q Consensus 121 ~~~~~D~Iv~~~~ 133 (218)
..+..|+++.+.-
T Consensus 122 ~~g~iD~lvnnAg 134 (291)
T 3ijr_A 122 QLGSLNILVNNVA 134 (291)
T ss_dssp HHSSCCEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 2257999997643
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=88.45 E-value=2.6 Score=34.53 Aligned_cols=95 Identities=19% Similarity=0.179 Sum_probs=56.5
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC--CCc-cccc--cC
Q 046623 51 DFQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS--DDL-SQLS--EL 122 (218)
Q Consensus 51 ~~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~-~~~~--~~ 122 (218)
..++.+||-+|+| .|..++.+++ .|+.+|+++|.++ ..+.+++ .|.. .++ |..+ ... +... ..
T Consensus 188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi--~~~~~~~~~~~~v~~~~~ 258 (373)
T 2fzw_A 188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGAT---ECI--NPQDFSKPIQEVLIEMTD 258 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCS---EEE--CGGGCSSCHHHHHHHHTT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEe--ccccccccHHHHHHHHhC
Confidence 3578899999975 3455555554 5665899999988 7777653 3432 222 2221 111 1110 12
Q ss_pred CCCcEEEEcccccCCcchHHHHHHHHHHhcCC-CceEEE
Q 046623 123 GEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTG-RHTVVW 160 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~g-G~~~i~ 160 (218)
+.+|+|+-.-. ....+..+.++++++ |+++.+
T Consensus 259 ~g~D~vid~~g------~~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 259 GGVDYSFECIG------NVKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp SCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred CCCCEEEECCC------cHHHHHHHHHhhccCCcEEEEE
Confidence 47999984211 135677888999999 955544
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=88.17 E-value=0.67 Score=37.79 Aligned_cols=95 Identities=18% Similarity=0.177 Sum_probs=56.2
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc---ccCC
Q 046623 51 DFQNKSVLELGAG-AGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL---SELG 123 (218)
Q Consensus 51 ~~~~~~vLDlG~G-~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~---~~~~ 123 (218)
..++.+||=+|+| .|..++.+++. |+.+|+++|.++ ..+.+++ .|.. .++ |..+.... .. -...
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi--~~~~~~~~~~v~~~t~g~ 234 (352)
T 3fpc_A 164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE----YGAT---DII--NYKNGDIVEQILKATDGK 234 (352)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH----HTCC---EEE--CGGGSCHHHHHHHHTTTC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---eEE--cCCCcCHHHHHHHHcCCC
Confidence 3578899999876 35555566654 555899999988 6776654 3432 222 21111111 11 1123
Q ss_pred CCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 124 EFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.+|+|+- +... ...+..+.++|+++|+++.+
T Consensus 235 g~D~v~d--~~g~----~~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 235 GVDKVVI--AGGD----VHTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp CEEEEEE--CSSC----TTHHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEE--CCCC----hHHHHHHHHHHhcCCEEEEe
Confidence 6999984 2211 24677788899999955544
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=88.16 E-value=4.4 Score=27.88 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=42.7
Q ss_pred CCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 54 NKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
..+|+=+|+| .++..+ .+.|. +|+.+|.++ .++.++.. + ..++.+|..+...-.......+|.|
T Consensus 6 ~~~v~I~G~G--~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~----~----~~~~~gd~~~~~~l~~~~~~~~d~v 74 (141)
T 3llv_A 6 RYEYIVIGSE--AAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDE----G----FDAVIADPTDESFYRSLDLEGVSAV 74 (141)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT----T----CEEEECCTTCHHHHHHSCCTTCSEE
T ss_pred CCEEEEECCC--HHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHC----C----CcEEECCCCCHHHHHhCCcccCCEE
Confidence 4578888885 344443 44555 899999998 76665432 2 5677777665432111123578998
Q ss_pred EEccc
Q 046623 129 IMSDV 133 (218)
Q Consensus 129 v~~~~ 133 (218)
+...+
T Consensus 75 i~~~~ 79 (141)
T 3llv_A 75 LITGS 79 (141)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 87444
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=88.14 E-value=0.57 Score=38.47 Aligned_cols=93 Identities=17% Similarity=0.081 Sum_probs=55.0
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-ccc---ccCC
Q 046623 51 DFQNKSVLELGAG-AGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQL---SELG 123 (218)
Q Consensus 51 ~~~~~~vLDlG~G-~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~---~~~~ 123 (218)
..++.+||=+|+| .|..++.+++. |+ +|++++.++ ..+.+++ .|.. .++ |...... ... ....
T Consensus 187 ~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~vi--~~~~~~~~~~v~~~~~g~ 256 (363)
T 3uog_A 187 LRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFA----LGAD---HGI--NRLEEDWVERVYALTGDR 256 (363)
T ss_dssp CCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----HTCS---EEE--ETTTSCHHHHHHHHHTTC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHH----cCCC---EEE--cCCcccHHHHHHHHhCCC
Confidence 3578899999976 35555566654 55 999999987 7766543 3432 222 2111111 111 1223
Q ss_pred CCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 124 EFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.+|+|+-.-. ...+..+.++|+++|+++++
T Consensus 257 g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~ 286 (363)
T 3uog_A 257 GADHILEIAG-------GAGLGQSLKAVAPDGRISVI 286 (363)
T ss_dssp CEEEEEEETT-------SSCHHHHHHHEEEEEEEEEE
T ss_pred CceEEEECCC-------hHHHHHHHHHhhcCCEEEEE
Confidence 7999884222 13466677899999955554
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=88.13 E-value=4.4 Score=31.51 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=52.0
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCcc-ccccCCCCc
Q 046623 51 DFQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLS-QLSELGEFD 126 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~D 126 (218)
+++++++|==|++.|. .+..+++.|+ +|+.+|.+.. +.+.+.++..+ .++..+.+|+.+...- .....++.|
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~-~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iD 81 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP-DETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFD 81 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC-HHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCC
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH-HHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCC
Confidence 3678888887877773 3445577777 8999998753 23334444555 3478888898765421 223457899
Q ss_pred EEEEcccc
Q 046623 127 MVIMSDVF 134 (218)
Q Consensus 127 ~Iv~~~~~ 134 (218)
+++.|.-.
T Consensus 82 iLVNNAGi 89 (247)
T 4hp8_A 82 ILVNNAGI 89 (247)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99976543
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=88.11 E-value=5.6 Score=29.90 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=47.8
Q ss_pred CCeEEEECCCCCHHHHH----HHHhCCCeEEEecCcc-hHHHHHHHHH-HhCCCCceEEEEeecCCCCcc-cc-----cc
Q 046623 54 NKSVLELGAGAGLPGLT----AARLGATRVVLTDVKP-LLPGLINNVE-ANGLGGRVEVRELVWGSDDLS-QL-----SE 121 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~----l~~~~~~~v~~~D~~~-~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~-~~-----~~ 121 (218)
++++|=.|++.| ++.. +++.|. +|+.++.++ ..+.+.+.+. ..+ .++.++.+|+.+...- .. ..
T Consensus 2 ~k~vlITGas~g-IG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (235)
T 3l77_A 2 MKVAVITGASRG-IGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQG--VEVFYHHLDVSKAESVEEFSKKVLER 77 (235)
T ss_dssp CCEEEEESCSSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHCC-HHHH
T ss_pred CCEEEEECCCcH-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcC--CeEEEEEeccCCHHHHHHHHHHHHHh
Confidence 456776776544 4444 355666 899999988 6666655554 444 4488888998765311 11 01
Q ss_pred CCCCcEEEEcccc
Q 046623 122 LGEFDMVIMSDVF 134 (218)
Q Consensus 122 ~~~~D~Iv~~~~~ 134 (218)
.++.|+++.+...
T Consensus 78 ~g~id~li~~Ag~ 90 (235)
T 3l77_A 78 FGDVDVVVANAGL 90 (235)
T ss_dssp HSSCSEEEECCCC
T ss_pred cCCCCEEEECCcc
Confidence 2479999976544
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=88.07 E-value=0.13 Score=41.92 Aligned_cols=92 Identities=11% Similarity=0.027 Sum_probs=54.7
Q ss_pred CCCeEEEECCC-CCHHHHHHHH-h--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC-CC-ccccccCCCC
Q 046623 53 QNKSVLELGAG-AGLPGLTAAR-L--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS-DD-LSQLSELGEF 125 (218)
Q Consensus 53 ~~~~vLDlG~G-~G~~~~~l~~-~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~~~~~~ 125 (218)
++.+||-+|+| .|..++.+++ . |+ +|++++.++ ..+.+++ .|.. .++ |..+ .. .........+
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~vi--~~~~~~~~~~~~~~g~g~ 239 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALE----LGAD---YVS--EMKDAESLINKLTDGLGA 239 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHH----HTCS---EEE--CHHHHHHHHHHHHTTCCE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHH----hCCC---EEe--ccccchHHHHHhhcCCCc
Confidence 78899999985 2455555554 4 65 899999988 7776654 3422 222 1111 00 1111122379
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|+|+-.-. ....++.+.++++++|+++.+
T Consensus 240 D~vid~~g------~~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 240 SIAIDLVG------TEETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp EEEEESSC------CHHHHHHHHHHEEEEEEEEEC
T ss_pred cEEEECCC------ChHHHHHHHHHhhcCCEEEEe
Confidence 99985221 134677888999999955444
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=88.02 E-value=6.9 Score=30.82 Aligned_cols=79 Identities=19% Similarity=0.169 Sum_probs=50.6
Q ss_pred CCCCeEEEECCCC--CH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----
Q 046623 52 FQNKSVLELGAGA--GL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL----- 119 (218)
Q Consensus 52 ~~~~~vLDlG~G~--G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~----- 119 (218)
.+++++|=-|+++ |. ++..+++.|. +|+.++.++ ..+.+.+.....+ .+.++.+|+.+...- ..
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~ 104 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLE 104 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHH
Confidence 5678899888763 32 3444566776 899999887 5555555544443 378888888765311 11
Q ss_pred ccCCCCcEEEEcccc
Q 046623 120 SELGEFDMVIMSDVF 134 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~ 134 (218)
...++.|+++.+.-.
T Consensus 105 ~~~g~iD~lVnnAG~ 119 (293)
T 3grk_A 105 KKWGKLDFLVHAIGF 119 (293)
T ss_dssp HHTSCCSEEEECCCC
T ss_pred HhcCCCCEEEECCcc
Confidence 122589999976543
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.93 E-value=2.6 Score=34.50 Aligned_cols=95 Identities=21% Similarity=0.268 Sum_probs=56.6
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC--CCcc-ccc--cC
Q 046623 51 DFQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS--DDLS-QLS--EL 122 (218)
Q Consensus 51 ~~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~-~~~--~~ 122 (218)
..++++||-+|+| .|..++.+++ .|+.+|+++|.++ .++.+++ .|.. .++ |..+ .... ... ..
T Consensus 190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi--~~~~~~~~~~~~~~~~~~ 260 (374)
T 1cdo_A 190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT---DFV--NPNDHSEPISQVLSKMTN 260 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC---EEE--CGGGCSSCHHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc---eEE--eccccchhHHHHHHHHhC
Confidence 3578899999975 3555555564 4555899999988 7777653 3432 222 2221 1111 110 12
Q ss_pred CCCcEEEEcccccCCcchHHHHHHHHHHhcCC-CceEEE
Q 046623 123 GEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTG-RHTVVW 160 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~g-G~~~i~ 160 (218)
+.+|+|+-.-. ....+..+.++|+++ |+++++
T Consensus 261 ~g~D~vid~~g------~~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 261 GGVDFSLECVG------NVGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp SCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred CCCCEEEECCC------CHHHHHHHHHHhhcCCcEEEEE
Confidence 47999984221 135678888999999 955444
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=87.39 E-value=1 Score=36.34 Aligned_cols=93 Identities=15% Similarity=0.045 Sum_probs=54.6
Q ss_pred CCCCCeEEEECCC--CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC-CCccc-cc--cC
Q 046623 51 DFQNKSVLELGAG--AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS-DDLSQ-LS--EL 122 (218)
Q Consensus 51 ~~~~~~vLDlG~G--~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~-~~--~~ 122 (218)
..++++||-.|++ .|.....++ ..|+ +|+++|.++ ..+.++ ..+.. .+ .|..+ ..... .. ..
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~----~~g~~---~~--~d~~~~~~~~~~~~~~~~ 212 (333)
T 1v3u_A 143 VKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLK----QIGFD---AA--FNYKTVNSLEEALKKASP 212 (333)
T ss_dssp CCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH----HTTCS---EE--EETTSCSCHHHHHHHHCT
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH----hcCCc---EE--EecCCHHHHHHHHHHHhC
Confidence 3578899999973 444444444 4565 899999887 666652 22321 11 24433 22111 10 12
Q ss_pred CCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 123 GEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+.+|+++-+.. ...+..+.++|+++|+++++
T Consensus 213 ~~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 213 DGYDCYFDNVG-------GEFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp TCEEEEEESSC-------HHHHHHHHTTEEEEEEEEEC
T ss_pred CCCeEEEECCC-------hHHHHHHHHHHhcCCEEEEE
Confidence 47999886432 23467778899999955544
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=87.39 E-value=0.64 Score=37.80 Aligned_cols=95 Identities=18% Similarity=0.150 Sum_probs=57.6
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc---ccCCC
Q 046623 51 DFQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL---SELGE 124 (218)
Q Consensus 51 ~~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~ 124 (218)
..++.+||=.|+| .|..++.+++ .+..+|+++|.++ ..+.+++ .|.. .++. ..+...+.. .....
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~---~~i~--~~~~~~~~v~~~t~g~g 239 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGAD---AAVK--SGAGAADAIRELTGGQG 239 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCS---EEEE--CSTTHHHHHHHHHGGGC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---EEEc--CCCcHHHHHHHHhCCCC
Confidence 3578899999986 3556666664 4566999999998 7776653 3432 2222 122111111 01237
Q ss_pred CcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 125 FDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+|+|+- +.. ....++.+.++|+++|+++++
T Consensus 240 ~d~v~d--~~G----~~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 240 ATAVFD--FVG----AQSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp EEEEEE--SSC----CHHHHHHHHHHEEEEEEEEEC
T ss_pred CeEEEE--CCC----CHHHHHHHHHHHhcCCEEEEE
Confidence 999884 211 134778888999999955544
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=87.32 E-value=3.3 Score=33.87 Aligned_cols=95 Identities=18% Similarity=0.184 Sum_probs=56.2
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC--CCcc-ccc--cC
Q 046623 51 DFQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS--DDLS-QLS--EL 122 (218)
Q Consensus 51 ~~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~-~~~--~~ 122 (218)
..++.+||-+|+| .|..++.+++ .|+.+|+++|.++ ..+.+++ .|.. .++ |..+ .... ... ..
T Consensus 189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi--~~~~~~~~~~~~~~~~~~ 259 (374)
T 2jhf_A 189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT---ECV--NPQDYKKPIQEVLTEMSN 259 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEE--CGGGCSSCHHHHHHHHTT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---eEe--cccccchhHHHHHHHHhC
Confidence 3578899999975 2555555554 4555899999988 7777643 3432 222 2221 1111 110 12
Q ss_pred CCCcEEEEcccccCCcchHHHHHHHHHHhcCC-CceEEE
Q 046623 123 GEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTG-RHTVVW 160 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~g-G~~~i~ 160 (218)
+.+|+|+-.-. ....+..+.++++++ |+++++
T Consensus 260 ~g~D~vid~~g------~~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 260 GGVDFSFEVIG------RLDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp SCBSEEEECSC------CHHHHHHHHHHBCTTTCEEEEC
T ss_pred CCCcEEEECCC------CHHHHHHHHHHhhcCCcEEEEe
Confidence 37999984211 135677888899999 955444
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=87.30 E-value=2.6 Score=32.52 Aligned_cols=80 Identities=21% Similarity=0.280 Sum_probs=53.1
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~ 121 (218)
.+++++|=-|++.|. ++..+++.|. +|+.++.++ ..+.+.+.+...+ .++.++.+|+.+...- .. ..
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 86 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQ 86 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 567788877766553 3334466776 899999998 7777777766655 4588888998765321 11 11
Q ss_pred CCCCcEEEEcccc
Q 046623 122 LGEFDMVIMSDVF 134 (218)
Q Consensus 122 ~~~~D~Iv~~~~~ 134 (218)
.++.|+++.+.-.
T Consensus 87 ~g~id~lv~nAg~ 99 (256)
T 3gaf_A 87 FGKITVLVNNAGG 99 (256)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 2579999976543
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=87.22 E-value=4.3 Score=33.32 Aligned_cols=118 Identities=11% Similarity=0.063 Sum_probs=66.2
Q ss_pred CCeEEEECCCC-C-HHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 54 NKSVLELGAGA-G-LPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 54 ~~~vLDlG~G~-G-~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
..+|.=||+|. | .++..+++.|. +|++.|.++ ..+.+.+ .++. . .....+........|+|++
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~----~g~~----~-----~~s~~e~~~~a~~~DvVi~ 87 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALER----EGIA----G-----ARSIEEFCAKLVKPRVVWL 87 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHT----TTCB----C-----CSSHHHHHHHSCSSCEEEE
T ss_pred CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHH----CCCE----E-----eCCHHHHHhcCCCCCEEEE
Confidence 45788888873 2 23344456665 899999998 6665432 2221 1 1111111112234699997
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc-CChHHHHHHHHHhCCcEEEEEEccC
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR-TRTGDCLHELIMSQGFRVIELTCQL 191 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~-~~~~~~~~~~~~~~gf~~~~~~~~~ 191 (218)
.-+.. ...++++.+...++++. +++...... ....+....+ .+.|......|+..
T Consensus 88 ~vp~~---~v~~vl~~l~~~l~~g~--iiId~st~~~~~~~~~~~~l-~~~g~~~vdapVsG 143 (358)
T 4e21_A 88 MVPAA---VVDSMLQRMTPLLAAND--IVIDGGNSHYQDDIRRADQM-RAQGITYVDVGTSG 143 (358)
T ss_dssp CSCGG---GHHHHHHHHGGGCCTTC--EEEECSSCCHHHHHHHHHHH-HTTTCEEEEEEEEC
T ss_pred eCCHH---HHHHHHHHHHhhCCCCC--EEEeCCCCChHHHHHHHHHH-HHCCCEEEeCCCCC
Confidence 54422 56777777777788776 333332222 2233444444 78888888777643
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=87.16 E-value=5.7 Score=30.81 Aligned_cols=80 Identities=25% Similarity=0.344 Sum_probs=50.2
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCc------------c-hHHHHHHHHHHhCCCCceEEEEeecCCCC
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVK------------P-LLPGLINNVEANGLGGRVEVRELVWGSDD 115 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~------------~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 115 (218)
..++++|=-|++.|. ++..+++.|. +|+.+|.+ + .++...+.+...+ .++.++.+|+.+..
T Consensus 11 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~ 87 (278)
T 3sx2_A 11 LTGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SRIVARQADVRDRE 87 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--CCEEEEECCTTCHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcC--CeEEEEeCCCCCHH
Confidence 567788888866552 3334456676 89999876 4 5555555555554 45889999987653
Q ss_pred cc-cc-----ccCCCCcEEEEcccc
Q 046623 116 LS-QL-----SELGEFDMVIMSDVF 134 (218)
Q Consensus 116 ~~-~~-----~~~~~~D~Iv~~~~~ 134 (218)
.- .. ...++.|+++.+.-.
T Consensus 88 ~v~~~~~~~~~~~g~id~lv~nAg~ 112 (278)
T 3sx2_A 88 SLSAALQAGLDELGRLDIVVANAGI 112 (278)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 11 11 112589999976544
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=86.89 E-value=0.86 Score=36.96 Aligned_cols=93 Identities=17% Similarity=0.013 Sum_probs=54.4
Q ss_pred CCCCCeEEEECCCC--CHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c---ccC
Q 046623 51 DFQNKSVLELGAGA--GLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L---SEL 122 (218)
Q Consensus 51 ~~~~~~vLDlG~G~--G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~---~~~ 122 (218)
..++.+||-.|+|+ |..+..++ ..|+ +|++++.++ ..+.+++ .+.. .++ |..+....+ . ...
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lga~---~~~--~~~~~~~~~~~~~~~~~ 211 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLR----LGAA---YVI--DTSTAPLYETVMELTNG 211 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH----HTCS---EEE--ETTTSCHHHHHHHHTTT
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----CCCc---EEE--eCCcccHHHHHHHHhCC
Confidence 36788999999874 45555555 4566 999999998 8777764 2322 222 222222111 1 122
Q ss_pred CCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 123 GEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
..+|+++-+-. ........++|+++|+++.+
T Consensus 212 ~g~Dvvid~~g-------~~~~~~~~~~l~~~G~iv~~ 242 (340)
T 3gms_A 212 IGADAAIDSIG-------GPDGNELAFSLRPNGHFLTI 242 (340)
T ss_dssp SCEEEEEESSC-------HHHHHHHHHTEEEEEEEEEC
T ss_pred CCCcEEEECCC-------ChhHHHHHHHhcCCCEEEEE
Confidence 47999885221 12223344799999955544
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=86.80 E-value=4.6 Score=31.85 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=49.0
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc---hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP---LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL----- 119 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~---~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~----- 119 (218)
.+++++|=-|++.|. ++..+++.|. +|+.++.+. ..+.+.+..+..+ .++.++.+|+.+...- ..
T Consensus 47 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~ 123 (294)
T 3r3s_A 47 LKDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKAR 123 (294)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence 467788888876553 2333456666 899888763 4455555555554 4588888888764311 11
Q ss_pred ccCCCCcEEEEcccc
Q 046623 120 SELGEFDMVIMSDVF 134 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~ 134 (218)
...++.|+++.+.-.
T Consensus 124 ~~~g~iD~lv~nAg~ 138 (294)
T 3r3s_A 124 EALGGLDILALVAGK 138 (294)
T ss_dssp HHHTCCCEEEECCCC
T ss_pred HHcCCCCEEEECCCC
Confidence 112589999976543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=86.66 E-value=5.8 Score=30.52 Aligned_cols=81 Identities=11% Similarity=0.119 Sum_probs=51.9
Q ss_pred CCCCeEEEECCC--CCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----
Q 046623 52 FQNKSVLELGAG--AGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL----- 119 (218)
Q Consensus 52 ~~~~~vLDlG~G--~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~----- 119 (218)
.+++++|=.|++ .|. ++..+++.|. +|+.++.++ ..+.+.+.....+- .++.++.+|+.+...- ..
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHH
Confidence 567788888876 443 3444566776 899998887 66666655554432 2588999998766421 11
Q ss_pred ccCCCCcEEEEcccc
Q 046623 120 SELGEFDMVIMSDVF 134 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~ 134 (218)
...+.+|+++.+...
T Consensus 83 ~~~g~id~li~~Ag~ 97 (266)
T 3oig_A 83 EQVGVIHGIAHCIAF 97 (266)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHhCCeeEEEEcccc
Confidence 112579999976543
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=86.44 E-value=6.4 Score=33.26 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=26.2
Q ss_pred CCCeEEEECCC-CCH-HHHHHHHhCCCeEEEecCcc-hHHHHHH
Q 046623 53 QNKSVLELGAG-AGL-PGLTAARLGATRVVLTDVKP-LLPGLIN 93 (218)
Q Consensus 53 ~~~~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~~-~~~~a~~ 93 (218)
.+.+.-=+|.| .|. .+..+++.|. +|+++|+++ .++.+.+
T Consensus 10 ~~~~~~ViGlGyvGlp~A~~La~~G~-~V~~~D~~~~kv~~L~~ 52 (431)
T 3ojo_A 10 HGSKLTVVGLGYIGLPTSIMFAKHGV-DVLGVDINQQTIDKLQN 52 (431)
T ss_dssp --CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHT
T ss_pred cCCccEEEeeCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHC
Confidence 45566667777 443 3334567776 899999999 7776654
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=86.35 E-value=3.3 Score=32.40 Aligned_cols=80 Identities=19% Similarity=0.298 Sum_probs=52.4
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-----cccC
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-----LSEL 122 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~~ 122 (218)
.+++++|=-|++.|. ++..+++.|. +|+.++.++ ..+.+.+.+...+ .++.++.+|+.+...-. ....
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 107 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSEAGAGTDLIERAEAI 107 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCCHHHHHHHHHHHHHh
Confidence 567788877765542 2333456676 899999998 7777766666655 45888999987654211 1112
Q ss_pred CCCcEEEEcccc
Q 046623 123 GEFDMVIMSDVF 134 (218)
Q Consensus 123 ~~~D~Iv~~~~~ 134 (218)
++.|+++.+.-.
T Consensus 108 g~iD~lvnnAg~ 119 (275)
T 4imr_A 108 APVDILVINASA 119 (275)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 589999976543
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=86.33 E-value=1.3 Score=35.97 Aligned_cols=93 Identities=19% Similarity=0.129 Sum_probs=55.1
Q ss_pred CCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-ccc---cCCCC
Q 046623 53 QNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QLS---ELGEF 125 (218)
Q Consensus 53 ~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~---~~~~~ 125 (218)
++.+||-+|+| .|...+.+++ .|+.+|++++.++ ..+.+++ .+.. .++ |..+.... ... ....+
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~----~Ga~---~~~--~~~~~~~~~~v~~~~~g~g~ 237 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK----VGAD---YVI--NPFEEDVVKEVMDITDGNGV 237 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH----HTCS---EEE--CTTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEE--CCCCcCHHHHHHHHcCCCCC
Confidence 78899999985 3445555554 4554899999988 7666653 3322 222 22222211 111 12369
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|+|+-.-. ....++.+.++++++|+++.+
T Consensus 238 D~vid~~g------~~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 238 DVFLEFSG------APKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp EEEEECSC------CHHHHHHHHHHEEEEEEEEEC
T ss_pred CEEEECCC------CHHHHHHHHHHHhcCCEEEEE
Confidence 99985322 135677788899999955444
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.30 E-value=4.1 Score=32.21 Aligned_cols=80 Identities=20% Similarity=0.278 Sum_probs=49.3
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCC-CCceEEEEeecCCCCcc-cc-----
Q 046623 52 FQNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGL-GGRVEVRELVWGSDDLS-QL----- 119 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~-~~~~~~~~~d~~~~~~~-~~----- 119 (218)
.+++++|=.|++ |.++..+ ++.|. +|+.++.++ ..+.+.+.+...+. ..++.++.+|+.+...- ..
T Consensus 24 l~~k~vlVTGas-~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 101 (297)
T 1xhl_A 24 FSGKSVIITGSS-NGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL 101 (297)
T ss_dssp CTTCEEEETTCS-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence 456677766654 4444444 55566 899999988 77666666554432 01578888888765311 11
Q ss_pred ccCCCCcEEEEccc
Q 046623 120 SELGEFDMVIMSDV 133 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~ 133 (218)
...+++|+++.+.-
T Consensus 102 ~~~g~iD~lvnnAG 115 (297)
T 1xhl_A 102 AKFGKIDILVNNAG 115 (297)
T ss_dssp HHHSCCCEEEECCC
T ss_pred HhcCCCCEEEECCC
Confidence 01247999997654
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=86.14 E-value=5.8 Score=30.95 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=47.0
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc--hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----
Q 046623 52 FQNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP--LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL----- 119 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~----- 119 (218)
.+++++|=.|++ |.++..+ ++.|. +|+.++.++ ..+.+.+.+...+ .++.++.+|+.+...- ..
T Consensus 27 ~~~k~vlVTGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 102 (283)
T 1g0o_A 27 LEGKVALVTGAG-RGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAV 102 (283)
T ss_dssp CTTCEEEETTTT-SHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC-cHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHH
Confidence 456677766655 4444444 45565 899988876 3454445555444 3478888888764311 10
Q ss_pred ccCCCCcEEEEcccc
Q 046623 120 SELGEFDMVIMSDVF 134 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~ 134 (218)
...+..|+++.+.-.
T Consensus 103 ~~~g~iD~lv~~Ag~ 117 (283)
T 1g0o_A 103 KIFGKLDIVCSNSGV 117 (283)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHcCCCCEEEECCCc
Confidence 112578999976543
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.73 E-value=3.6 Score=33.15 Aligned_cols=96 Identities=22% Similarity=0.209 Sum_probs=56.6
Q ss_pred CCCCCCeEEEECCC-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc----cccC
Q 046623 50 FDFQNKSVLELGAG-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ----LSEL 122 (218)
Q Consensus 50 ~~~~~~~vLDlG~G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~ 122 (218)
...++.+||=.|+| .|..++.++ ..|+..++++|.++ .++.+++ .|.. .++ |..+....+ ....
T Consensus 157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~---~~i--~~~~~~~~~~~~~~~~~ 227 (346)
T 4a2c_A 157 QGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAM---QTF--NSSEMSAPQMQSVLREL 227 (346)
T ss_dssp TCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEE--ETTTSCHHHHHHHHGGG
T ss_pred ccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCe---EEE--eCCCCCHHHHHHhhccc
Confidence 34678899999986 344555555 45666788999988 7766653 3432 222 222222111 1123
Q ss_pred CCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 123 GEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
..+|+|+-. . -....++...++++++|.++++
T Consensus 228 ~g~d~v~d~--~----G~~~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 228 RFNQLILET--A----GVPQTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp CSSEEEEEC--S----CSHHHHHHHHHHCCTTCEEEEC
T ss_pred CCccccccc--c----cccchhhhhhheecCCeEEEEE
Confidence 567877742 1 1245677888899999955444
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=85.68 E-value=1 Score=36.11 Aligned_cols=88 Identities=15% Similarity=0.019 Sum_probs=52.2
Q ss_pred eEEEECC-C-CCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 56 SVLELGA-G-AGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 56 ~vLDlG~-G-~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
+||=.|+ | .|..++.+++. |+ +|++++.++ ..+.+++ .|.. .++. ..+.........+.+|+++-
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~vi~--~~~~~~~~~~~~~~~d~v~d- 217 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKS----LGAN---RILS--RDEFAESRPLEKQLWAGAID- 217 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHH----HTCS---EEEE--GGGSSCCCSSCCCCEEEEEE-
T ss_pred eEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCC---EEEe--cCCHHHHHhhcCCCccEEEE-
Confidence 4888886 2 56666666654 55 999999988 8777754 3432 2221 11111000012357898774
Q ss_pred ccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+.. .+.++.+.++|+++|+++.+
T Consensus 218 -~~g-----~~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 218 -TVG-----DKVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp -SSC-----HHHHHHHHHTEEEEEEEEEC
T ss_pred -CCC-----cHHHHHHHHHHhcCCEEEEE
Confidence 221 23788888999999955544
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=85.59 E-value=1.1 Score=37.93 Aligned_cols=44 Identities=25% Similarity=0.357 Sum_probs=33.3
Q ss_pred CCeEEEECCCCCHHHHHHH----HhC--CCeEEEecCcc-hHHHHHHHHHH
Q 046623 54 NKSVLELGAGAGLPGLTAA----RLG--ATRVVLTDVKP-LLPGLINNVEA 97 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~----~~~--~~~v~~~D~~~-~~~~a~~~~~~ 97 (218)
..+|+|+|+|.|.++..+. +.+ ..+++.+|+|+ ..+..++++..
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 4699999999999877663 222 24899999999 77777776654
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=85.57 E-value=3.2 Score=31.87 Aligned_cols=82 Identities=18% Similarity=0.131 Sum_probs=52.7
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC-CceEEEEeecCCCCcc-cc-----c
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG-GRVEVRELVWGSDDLS-QL-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~-~~-----~ 120 (218)
..++++|=-|++.|. ++..+++.|. +|+.++.++ ..+.+.+.+....-. ..+.++.+|+.+...- .. .
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ 83 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence 456788888776653 3344466777 899999998 777776666554221 3478888898765311 10 1
Q ss_pred cCCCCcEEEEcccc
Q 046623 121 ELGEFDMVIMSDVF 134 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~ 134 (218)
..++.|+++.+.-.
T Consensus 84 ~~g~iD~lvnnAg~ 97 (250)
T 3nyw_A 84 KYGAVDILVNAAAM 97 (250)
T ss_dssp HHCCEEEEEECCCC
T ss_pred hcCCCCEEEECCCc
Confidence 12579999976544
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=85.51 E-value=1.5 Score=35.51 Aligned_cols=94 Identities=18% Similarity=0.142 Sum_probs=56.0
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-ccc-cCCCC
Q 046623 51 DFQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QLS-ELGEF 125 (218)
Q Consensus 51 ~~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~-~~~~~ 125 (218)
..++.+||-.|+| .|.....+++ .|+ +|++++.++ ..+.+++ .+.. .+ .|..+.... ... ..+.+
T Consensus 162 ~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~--~d~~~~~~~~~~~~~~~~~ 231 (339)
T 1rjw_A 162 AKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGAD---LV--VNPLKEDAAKFMKEKVGGV 231 (339)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCS---EE--ECTTTSCHHHHHHHHHSSE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----CCCC---EE--ecCCCccHHHHHHHHhCCC
Confidence 3568899999985 3555555554 455 999999988 7766643 3422 12 233322211 110 01478
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|+|+-.-. ....++.+.++|+++|+++.+
T Consensus 232 d~vid~~g------~~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 232 HAAVVTAV------SKPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp EEEEESSC------CHHHHHHHHHHEEEEEEEEEC
T ss_pred CEEEECCC------CHHHHHHHHHHhhcCCEEEEe
Confidence 99885322 135677888899999955444
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=85.37 E-value=6.4 Score=33.40 Aligned_cols=132 Identities=22% Similarity=0.297 Sum_probs=67.9
Q ss_pred CCCeEEEECCC-CCH-HHHHHHHhCCCeEEEecCcc-hHHHHHHHH------------HHhCCCCceEEEEeecCCCCcc
Q 046623 53 QNKSVLELGAG-AGL-PGLTAARLGATRVVLTDVKP-LLPGLINNV------------EANGLGGRVEVRELVWGSDDLS 117 (218)
Q Consensus 53 ~~~~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~------------~~~~~~~~~~~~~~d~~~~~~~ 117 (218)
...+|-=+|+| .|. ++..+++.|. +|+++|+++ .++.+.+.. +.+-...++.+- .. ..
T Consensus 7 ~~~~~~vIGlG~vG~~~A~~La~~G~-~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~t-----td-~~ 79 (446)
T 4a7p_A 7 GSVRIAMIGTGYVGLVSGACFSDFGH-EVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFT-----TD-LA 79 (446)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEE-----SC-HH
T ss_pred CceEEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEE-----CC-HH
Confidence 34578888887 343 2334466666 899999999 777654420 000000112221 01 00
Q ss_pred ccccCCCCcEEEEc--ccc---cCCc---chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhC----CcEEE
Q 046623 118 QLSELGEFDMVIMS--DVF---YDPE---EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQ----GFRVI 185 (218)
Q Consensus 118 ~~~~~~~~D~Iv~~--~~~---~~~~---~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~----gf~~~ 185 (218)
+ .-...|+|+.. .+. .... ...+.++.+.+.++++. +++..++ ......+.+...+.+. .|.+.
T Consensus 80 e--a~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~-iVV~~ST-v~pgtt~~l~~~l~e~~~~~d~~v~ 155 (446)
T 4a7p_A 80 E--GVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPS-VIVTKST-VPVGTGDEVERIIAEVAPNSGAKVV 155 (446)
T ss_dssp H--HHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCC-EEEECSC-CCTTHHHHHHHHHHHHSTTSCCEEE
T ss_pred H--HHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCC-EEEEeCC-CCchHHHHHHHHHHHhCCCCCceEE
Confidence 0 12457988874 222 1112 25666677777788765 3444333 3334444444443443 36665
Q ss_pred EEEccCCCCC
Q 046623 186 ELTCQLGGGC 195 (218)
Q Consensus 186 ~~~~~~~~~~ 195 (218)
.-|.....|.
T Consensus 156 ~~Pe~a~eG~ 165 (446)
T 4a7p_A 156 SNPEFLREGA 165 (446)
T ss_dssp ECCCCCCTTS
T ss_pred eCcccccccc
Confidence 5576666554
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.15 E-value=6 Score=30.72 Aligned_cols=80 Identities=21% Similarity=0.246 Sum_probs=48.6
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEec-Ccc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----c
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTD-VKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D-~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~ 120 (218)
.+++++|=-|++.|. ++..+++.|. +|+.++ .++ ..+.+.+.+...+ .++.++.+|+.+...- .. .
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 101 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEE 101 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 356788888776653 3344567777 777764 444 6666666665555 4488888898765311 11 1
Q ss_pred cCCCCcEEEEcccc
Q 046623 121 ELGEFDMVIMSDVF 134 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~ 134 (218)
..++.|+++.+.-.
T Consensus 102 ~~g~iD~lvnnAG~ 115 (267)
T 3u5t_A 102 AFGGVDVLVNNAGI 115 (267)
T ss_dssp HHSCEEEEEECCCC
T ss_pred HcCCCCEEEECCCC
Confidence 12579999976543
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=85.01 E-value=1.2 Score=36.13 Aligned_cols=94 Identities=15% Similarity=0.074 Sum_probs=55.2
Q ss_pred CCCCCeEEEECC--CCCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC-Ccc-ccc--cC
Q 046623 51 DFQNKSVLELGA--GAGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD-DLS-QLS--EL 122 (218)
Q Consensus 51 ~~~~~~vLDlG~--G~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~-~~~--~~ 122 (218)
..++++||-.|+ |.|.....+++ .|+ +|++++.++ ..+.+++. .+.. .+ .|..+. ... ... ..
T Consensus 153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~---~g~~---~~--~d~~~~~~~~~~~~~~~~ 223 (345)
T 2j3h_A 153 PKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTK---FGFD---DA--FNYKEESDLTAALKRCFP 223 (345)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT---SCCS---EE--EETTSCSCSHHHHHHHCT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH---cCCc---eE--EecCCHHHHHHHHHHHhC
Confidence 357889999997 24555555554 565 899999887 66665422 2321 12 233321 111 110 12
Q ss_pred CCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 123 GEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
..+|+++-+-. ...+..+.++++++|+++++
T Consensus 224 ~~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 224 NGIDIYFENVG-------GKMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp TCEEEEEESSC-------HHHHHHHHTTEEEEEEEEEC
T ss_pred CCCcEEEECCC-------HHHHHHHHHHHhcCCEEEEE
Confidence 46899886322 24677788899999955444
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=84.97 E-value=2.5 Score=33.55 Aligned_cols=121 Identities=12% Similarity=0.029 Sum_probs=64.0
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCc
Q 046623 51 DFQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
..+++++|=+|+| |. ....+++.|+.+++.++.++ ..+.+.+.+...... +.+...++.+... ....+|
T Consensus 124 ~l~~k~vlVlGaG-G~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~--~~i~~~~~~~l~~----~l~~~D 196 (283)
T 3jyo_A 124 NAKLDSVVQVGAG-GVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGR--EAVVGVDARGIED----VIAAAD 196 (283)
T ss_dssp TCCCSEEEEECCS-HHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTS--CCEEEECSTTHHH----HHHHSS
T ss_pred CcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCC--ceEEEcCHHHHHH----HHhcCC
Confidence 4678899999986 32 22234566777899999987 666555555433211 2333333222110 123589
Q ss_pred EEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEE
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRV 184 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~ 184 (218)
+|+..-+....+.....+ -..+++++. ++....+.+....+++.. ++.|...
T Consensus 197 iVInaTp~Gm~~~~~~pi--~~~~l~~~~---~v~DlvY~P~~T~ll~~A-~~~G~~~ 248 (283)
T 3jyo_A 197 GVVNATPMGMPAHPGTAF--DVSCLTKDH---WVGDVVYMPIETELLKAA-RALGCET 248 (283)
T ss_dssp EEEECSSTTSTTSCSCSS--CGGGCCTTC---EEEECCCSSSSCHHHHHH-HHHTCCE
T ss_pred EEEECCCCCCCCCCCCCC--CHHHhCCCC---EEEEecCCCCCCHHHHHH-HHCcCeE
Confidence 999755543211110001 123566665 233333344455677777 7777654
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=84.95 E-value=4.4 Score=31.38 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=51.2
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-cc-cccCCC
Q 046623 52 FQNKSVLELGAGAGLPGLT----AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQ-LSELGE 124 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~----l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~-~~~~~~ 124 (218)
.+++++|=-|++.| ++.. +++.|. +|+.++.++ ..+.+.+.+...+....+.++.+|+.+... .. ....++
T Consensus 8 l~~k~~lVTGas~g-IG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~ 85 (267)
T 3t4x_A 8 LKGKTALVTGSTAG-IGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPK 85 (267)
T ss_dssp CTTCEEEETTCSSH-HHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCC
T ss_pred cCCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCC
Confidence 45677887776544 4443 456666 899999998 777766666555433457778888765431 11 123357
Q ss_pred CcEEEEcccc
Q 046623 125 FDMVIMSDVF 134 (218)
Q Consensus 125 ~D~Iv~~~~~ 134 (218)
.|+++.+.-.
T Consensus 86 id~lv~nAg~ 95 (267)
T 3t4x_A 86 VDILINNLGI 95 (267)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999976543
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=84.69 E-value=1.2 Score=35.87 Aligned_cols=93 Identities=15% Similarity=-0.025 Sum_probs=54.7
Q ss_pred CCCCCeEEEECCC--CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc---ccC
Q 046623 51 DFQNKSVLELGAG--AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL---SEL 122 (218)
Q Consensus 51 ~~~~~~vLDlG~G--~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~---~~~ 122 (218)
..++++||=.|+. .|.....+++ .|+ +|++++.++ ..+.+++ .+.. .++ |..+.... .. ...
T Consensus 146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~~~--~~~~~~~~~~~~~~~~~ 215 (334)
T 3qwb_A 146 VKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE----YGAE---YLI--NASKEDILRQVLKFTNG 215 (334)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEE--ETTTSCHHHHHHHHTTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc---EEE--eCCCchHHHHHHHHhCC
Confidence 3578899999842 4555555554 455 999999987 7666543 3322 222 22222211 11 013
Q ss_pred CCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 123 GEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
..+|+++-+-. ...++.+.++|+++|+++.+
T Consensus 216 ~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 216 KGVDASFDSVG-------KDTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp SCEEEEEECCG-------GGGHHHHHHHEEEEEEEEEC
T ss_pred CCceEEEECCC-------hHHHHHHHHHhccCCEEEEE
Confidence 46999885322 14567788899999955544
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=84.66 E-value=1 Score=36.53 Aligned_cols=93 Identities=18% Similarity=0.107 Sum_probs=54.7
Q ss_pred CCCCCeEEEECCC--CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc---ccCC
Q 046623 51 DFQNKSVLELGAG--AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL---SELG 123 (218)
Q Consensus 51 ~~~~~~vLDlG~G--~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~ 123 (218)
..++++||=.|++ .|..+..+++ .|+ +|++++.++ ..+.+++ .+.. .++. ......... ....
T Consensus 157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~v~~--~~~~~~~~v~~~~~~~ 226 (342)
T 4eye_A 157 LRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKS----VGAD---IVLP--LEEGWAKAVREATGGA 226 (342)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCS---EEEE--SSTTHHHHHHHHTTTS
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCc---EEec--CchhHHHHHHHHhCCC
Confidence 3578899999872 4556666654 455 999999988 7776654 2322 2222 221111111 1123
Q ss_pred CCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 124 EFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.+|+++-.-. . ..+..+.++++++|+++++
T Consensus 227 g~Dvvid~~g--~-----~~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 227 GVDMVVDPIG--G-----PAFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp CEEEEEESCC---------CHHHHHHTEEEEEEEEEC
T ss_pred CceEEEECCc--h-----hHHHHHHHhhcCCCEEEEE
Confidence 6999985322 1 2466778899999955554
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=84.10 E-value=2.5 Score=34.53 Aligned_cols=93 Identities=17% Similarity=0.046 Sum_probs=56.2
Q ss_pred CCCCCeEEEECC--CCCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-cc--cCC
Q 046623 51 DFQNKSVLELGA--GAGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-LS--ELG 123 (218)
Q Consensus 51 ~~~~~~vLDlG~--G~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~--~~~ 123 (218)
..++++||-.|+ |.|.....+++ .|+ +|++++.++ ..+.+++ .+.. .++ |..+....+ .. ...
T Consensus 161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~---~~~--~~~~~~~~~~~~~~~~~ 230 (362)
T 2c0c_A 161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS----LGCD---RPI--NYKTEPVGTVLKQEYPE 230 (362)
T ss_dssp CCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEE--ETTTSCHHHHHHHHCTT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH----cCCc---EEE--ecCChhHHHHHHHhcCC
Confidence 357889999993 36666666664 455 899999987 6666653 3422 222 322222111 10 124
Q ss_pred CCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 124 EFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.+|+|+-.-. ...++.+.++++++|+++.+
T Consensus 231 g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 231 GVDVVYESVG-------GAMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp CEEEEEECSC-------THHHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEECCC-------HHHHHHHHHHHhcCCEEEEE
Confidence 6899885322 14677888999999954444
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.96 E-value=3.8 Score=31.89 Aligned_cols=79 Identities=22% Similarity=0.226 Sum_probs=50.4
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----c
Q 046623 52 FQNKSVLELGAGAGLPGLT----AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~----l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~ 120 (218)
.+++++|=.|++.| ++.. +++.|. +|+.++.++ .++.+.+.+...+ ..+.++.+|+.+...- .. .
T Consensus 19 l~~k~vlVTGas~g-IG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 94 (273)
T 1ae1_A 19 LKGTTALVTGGSKG-IGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAH 94 (273)
T ss_dssp CTTCEEEEESCSSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCcch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHH
Confidence 46778888876544 4443 355666 899999988 7766655555544 3478888888765311 11 0
Q ss_pred cC-CCCcEEEEcccc
Q 046623 121 EL-GEFDMVIMSDVF 134 (218)
Q Consensus 121 ~~-~~~D~Iv~~~~~ 134 (218)
.. +..|+++.+.-.
T Consensus 95 ~~~g~id~lv~nAg~ 109 (273)
T 1ae1_A 95 VFDGKLNILVNNAGV 109 (273)
T ss_dssp HTTSCCCEEEECCCC
T ss_pred HcCCCCcEEEECCCC
Confidence 11 689999976543
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=83.70 E-value=0.93 Score=36.50 Aligned_cols=92 Identities=17% Similarity=0.077 Sum_probs=54.2
Q ss_pred CCCCeEEEECC-C-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c---ccCC
Q 046623 52 FQNKSVLELGA-G-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L---SELG 123 (218)
Q Consensus 52 ~~~~~vLDlG~-G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~---~~~~ 123 (218)
.++++||=.|+ | .|.....++ ..|+ +|++++.++ ..+.+++ .+.. .++ |..+....+ . ....
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~---~~~--~~~~~~~~~~~~~~~~~~ 208 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKA----LGAW---ETI--DYSHEDVAKRVLELTDGK 208 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTCS---EEE--ETTTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCC---EEE--eCCCccHHHHHHHHhCCC
Confidence 56889998883 3 455555555 4566 999999888 7776653 3322 222 222222111 1 1124
Q ss_pred CCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 124 EFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.+|+++-+-. ...+..+.++++++|+++++
T Consensus 209 g~Dvvid~~g-------~~~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 209 KCPVVYDGVG-------QDTWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp CEEEEEESSC-------GGGHHHHHTTEEEEEEEEEC
T ss_pred CceEEEECCC-------hHHHHHHHHHhcCCCEEEEE
Confidence 7999885322 14566778899999955444
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=83.68 E-value=4.2 Score=31.22 Aligned_cols=80 Identities=24% Similarity=0.258 Sum_probs=53.4
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc----ccC
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL----SEL 122 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~----~~~ 122 (218)
.+++++|=.|++.|. ++..+++.|. +|+.++.++ .++.+.+.+...+ .++.++.+|+.+...- .. ...
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAH 81 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhh
Confidence 456788888776653 3334456676 899999998 7777777776655 4588899998765311 11 011
Q ss_pred CCCcEEEEcccc
Q 046623 123 GEFDMVIMSDVF 134 (218)
Q Consensus 123 ~~~D~Iv~~~~~ 134 (218)
++.|+++.+.-.
T Consensus 82 g~id~lv~nAg~ 93 (252)
T 3h7a_A 82 APLEVTIFNVGA 93 (252)
T ss_dssp SCEEEEEECCCC
T ss_pred CCceEEEECCCc
Confidence 578999976544
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=83.68 E-value=3.7 Score=31.60 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=49.1
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-cccc-----
Q 046623 52 FQNKSVLELGAGAGLPGLT----AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQLS----- 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~----l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~----- 120 (218)
.+++++|=-|++ |.++.. +++.|. +|+.++.++ ..+.+.+.+...+ .++.++.+|+.+... ....
T Consensus 7 l~~k~vlVTGas-~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (260)
T 2ae2_A 7 LEGCTALVTGGS-RGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVAN 82 (260)
T ss_dssp CTTCEEEEESCS-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 456788877765 444444 355665 899999888 6666555554443 357888888876531 1110
Q ss_pred cC-CCCcEEEEccc
Q 046623 121 EL-GEFDMVIMSDV 133 (218)
Q Consensus 121 ~~-~~~D~Iv~~~~ 133 (218)
.. +..|+++.+.-
T Consensus 83 ~~~g~id~lv~~Ag 96 (260)
T 2ae2_A 83 HFHGKLNILVNNAG 96 (260)
T ss_dssp HTTTCCCEEEECCC
T ss_pred HcCCCCCEEEECCC
Confidence 11 67999997654
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=83.47 E-value=13 Score=28.49 Aligned_cols=82 Identities=12% Similarity=0.035 Sum_probs=52.2
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~ 121 (218)
.+++++|=-|++.|. ++..+++.|. +|+.++.++ ..+.+.+.+....-..++.++.+|+.+...- .. ..
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT 84 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 567788888876653 3334456676 899999998 7777666665422123478888888765311 11 11
Q ss_pred CCCCcEEEEcccc
Q 046623 122 LGEFDMVIMSDVF 134 (218)
Q Consensus 122 ~~~~D~Iv~~~~~ 134 (218)
.++.|+++.+.-.
T Consensus 85 ~g~id~lvnnAg~ 97 (265)
T 3lf2_A 85 LGCASILVNNAGQ 97 (265)
T ss_dssp HCSCSEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 2579999976544
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=83.28 E-value=3.6 Score=33.21 Aligned_cols=95 Identities=12% Similarity=-0.064 Sum_probs=53.8
Q ss_pred CCCCCeEEEECCCCC-HHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-ccc-c--cCC
Q 046623 51 DFQNKSVLELGAGAG-LPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQL-S--ELG 123 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G-~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~-~--~~~ 123 (218)
..++.+||=+|+|.+ ..+..++ ..++.+|+++|.++ ..+.+++ .+.. .++ |..+... +.. . ...
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga~---~~i--~~~~~~~~~~v~~~t~g~ 231 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGAD---VTI--NSGDVNPVDEIKKITGGL 231 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTCS---EEE--EC-CCCHHHHHHHHTTSS
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCCe---EEE--eCCCCCHHHHhhhhcCCC
Confidence 467889999999754 3444444 45667999999988 6665543 3332 222 2222211 111 1 123
Q ss_pred CCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 124 EFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.+|.++... .....+....++++++|+++++
T Consensus 232 g~d~~~~~~------~~~~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 232 GVQSAIVCA------VARIAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp CEEEEEECC------SCHHHHHHHHHTEEEEEEEEEC
T ss_pred CceEEEEec------cCcchhheeheeecCCceEEEE
Confidence 456665421 1245677788899999955544
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.20 E-value=1.6 Score=35.60 Aligned_cols=92 Identities=20% Similarity=0.120 Sum_probs=53.7
Q ss_pred CCCCeEEEECCC--CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc---ccCC
Q 046623 52 FQNKSVLELGAG--AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL---SELG 123 (218)
Q Consensus 52 ~~~~~vLDlG~G--~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~---~~~~ 123 (218)
.++++||-.|++ .|.....++ ..|+ +|++++.++ ..+.++ ..+.. .+ .|..+.... .. ....
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~----~~ga~---~~--~d~~~~~~~~~~~~~~~~~ 238 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVL----QNGAH---EV--FNHREVNYIDKIKKYVGEK 238 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH----HTTCS---EE--EETTSTTHHHHHHHHHCTT
T ss_pred CCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHH----HcCCC---EE--EeCCCchHHHHHHHHcCCC
Confidence 568899999973 444455554 4455 899999887 666543 23322 12 233332211 11 1123
Q ss_pred CCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 124 EFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.+|+++-+.. ...+....++++++|+++.+
T Consensus 239 ~~D~vi~~~G-------~~~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 239 GIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp CEEEEEESCH-------HHHHHHHHHHEEEEEEEEEC
T ss_pred CcEEEEECCC-------hHHHHHHHHhccCCCEEEEE
Confidence 6999986322 23567778899999955544
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.18 E-value=7.3 Score=30.04 Aligned_cols=78 Identities=26% Similarity=0.291 Sum_probs=54.4
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~ 121 (218)
.+++++|=-|++.|. ++..+++.|. +|+.++.++ .++.+.+.+...+ .++.++.+|+.+...- .. ..
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 85 (264)
T 3ucx_A 9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKA 85 (264)
T ss_dssp TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 567889988887763 3444566676 899999998 7777777776655 4588899998765421 11 12
Q ss_pred CCCCcEEEEcc
Q 046623 122 LGEFDMVIMSD 132 (218)
Q Consensus 122 ~~~~D~Iv~~~ 132 (218)
.++.|+++.+.
T Consensus 86 ~g~id~lv~nA 96 (264)
T 3ucx_A 86 YGRVDVVINNA 96 (264)
T ss_dssp TSCCSEEEECC
T ss_pred cCCCcEEEECC
Confidence 35899999765
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=83.12 E-value=1.2 Score=35.89 Aligned_cols=94 Identities=19% Similarity=0.119 Sum_probs=55.5
Q ss_pred CCCCCeEEEECCC--CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c--ccCC
Q 046623 51 DFQNKSVLELGAG--AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L--SELG 123 (218)
Q Consensus 51 ~~~~~~vLDlG~G--~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~--~~~~ 123 (218)
..++++||-.|++ .|.....+++ .|+ +|++++.++ ..+.+.+ ..+.. .+ .|..+..... . ...+
T Consensus 147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~---~~g~~---~~--~~~~~~~~~~~~~~~~~~ 217 (336)
T 4b7c_A 147 PKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVE---ELGFD---GA--IDYKNEDLAAGLKRECPK 217 (336)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH---TTCCS---EE--EETTTSCHHHHHHHHCTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH---HcCCC---EE--EECCCHHHHHHHHHhcCC
Confidence 3578899999983 4555555554 455 999999887 6666522 22321 12 2333322111 1 0124
Q ss_pred CCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 124 EFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.+|+++-+-. ...+..+.++++++|+++++
T Consensus 218 ~~d~vi~~~g-------~~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 218 GIDVFFDNVG-------GEILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp CEEEEEESSC-------HHHHHHHHTTEEEEEEEEEC
T ss_pred CceEEEECCC-------cchHHHHHHHHhhCCEEEEE
Confidence 6998885322 24677888899999955444
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=82.79 E-value=4.8 Score=30.71 Aligned_cols=78 Identities=28% Similarity=0.330 Sum_probs=49.8
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----c
Q 046623 52 FQNKSVLELGAGAGLPGLT----AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~----l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~ 120 (218)
.+++++|=.|++.| ++.. +++.|. +|+.++.++ .++.+.+.+...+ .++.++.+|+.+...- .. .
T Consensus 5 l~~k~~lVTGas~g-IG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~ 80 (247)
T 2jah_A 5 LQGKVALITGASSG-IGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAG--AKVHVLELDVADRQGVDAAVASTVE 80 (247)
T ss_dssp TTTCEEEEESCSSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence 45678887876554 4443 455666 899999988 7766666655544 3478888888765311 11 1
Q ss_pred cCCCCcEEEEccc
Q 046623 121 ELGEFDMVIMSDV 133 (218)
Q Consensus 121 ~~~~~D~Iv~~~~ 133 (218)
..+..|+++.+.-
T Consensus 81 ~~g~id~lv~nAg 93 (247)
T 2jah_A 81 ALGGLDILVNNAG 93 (247)
T ss_dssp HHSCCSEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 1257999997654
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=82.78 E-value=11 Score=29.69 Aligned_cols=80 Identities=29% Similarity=0.396 Sum_probs=50.6
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCc------------c-hHHHHHHHHHHhCCCCceEEEEeecCCCC
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVK------------P-LLPGLINNVEANGLGGRVEVRELVWGSDD 115 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~------------~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 115 (218)
.+++++|=-|++.|. ++..+++.|. +|+.+|.+ + .++.+.+.++..+ .++.++.+|+.+..
T Consensus 26 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~ 102 (299)
T 3t7c_A 26 VEGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRDFD 102 (299)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHH
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcC--CceEEEECCCCCHH
Confidence 567788888877663 3334466676 89998876 4 4555555555544 45888999987653
Q ss_pred cc-cc-----ccCCCCcEEEEcccc
Q 046623 116 LS-QL-----SELGEFDMVIMSDVF 134 (218)
Q Consensus 116 ~~-~~-----~~~~~~D~Iv~~~~~ 134 (218)
.- .. ...++.|+++.+.-.
T Consensus 103 ~v~~~~~~~~~~~g~iD~lv~nAg~ 127 (299)
T 3t7c_A 103 AMQAAVDDGVTQLGRLDIVLANAAL 127 (299)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 11 11 122589999976543
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.67 E-value=6.7 Score=29.98 Aligned_cols=76 Identities=21% Similarity=0.265 Sum_probs=45.9
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-ccc-----c
Q 046623 52 FQNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQL-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~-----~ 120 (218)
.+++++|=.|++ |.++..+ ++.|. +|+.++.++ ..+...+.+ + .++.++.+|+.+... ... .
T Consensus 4 l~~k~vlVTGas-~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~v~~~~~~~~~ 76 (253)
T 1hxh_A 4 LQGKVALVTGGA-SGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAEL---G--ERSMFVRHDVSSEADWTLVMAAVQR 76 (253)
T ss_dssp TTTCEEEETTTT-SHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---C--TTEEEECCCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---C--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 456677766654 4444444 45565 899999887 665544433 2 347888888876531 111 1
Q ss_pred cCCCCcEEEEcccc
Q 046623 121 ELGEFDMVIMSDVF 134 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~ 134 (218)
..++.|+++.+.-.
T Consensus 77 ~~g~id~lv~~Ag~ 90 (253)
T 1hxh_A 77 RLGTLNVLVNNAGI 90 (253)
T ss_dssp HHCSCCEEEECCCC
T ss_pred HcCCCCEEEECCCC
Confidence 12578999976543
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=82.54 E-value=9.8 Score=29.59 Aligned_cols=77 Identities=25% Similarity=0.316 Sum_probs=47.8
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-ccc-----c
Q 046623 52 FQNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQL-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~-----~ 120 (218)
.+++++|=.|+ +|.++..+ ++.|. +|++++.++ .++.+.+.+...+. ..+.++.+|+.+... ... .
T Consensus 26 ~~~k~vlITGa-sggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~v~~~~~~~~~ 102 (286)
T 1xu9_A 26 LQGKKVIVTGA-SKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMTFAEQFVAQAGK 102 (286)
T ss_dssp GTTCEEEESSC-SSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCC-CcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCC-CceEEEeCCCCCHHHHHHHHHHHHH
Confidence 34667886665 45555544 45565 899999988 77666555544432 247888888876431 111 0
Q ss_pred cCCCCcEEEEc
Q 046623 121 ELGEFDMVIMS 131 (218)
Q Consensus 121 ~~~~~D~Iv~~ 131 (218)
..+.+|+++.+
T Consensus 103 ~~g~iD~li~n 113 (286)
T 1xu9_A 103 LMGGLDMLILN 113 (286)
T ss_dssp HHTSCSEEEEC
T ss_pred HcCCCCEEEEC
Confidence 12479999976
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.49 E-value=7.3 Score=30.42 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=50.7
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecC-cc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-----c
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDV-KP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~-~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-----~ 120 (218)
..++++|=-|++.|. ++..+++.|. +|+.++. ++ ..+...+.+...+ .++.++.+|+.+...-. . .
T Consensus 27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 103 (280)
T 4da9_A 27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLG--ARVIFLRADLADLSSHQATVDAVVA 103 (280)
T ss_dssp CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTT--CCEEEEECCTTSGGGHHHHHHHHHH
T ss_pred cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 567788888776553 3334456666 8999886 45 6666666665555 45889999987654211 1 1
Q ss_pred cCCCCcEEEEcccc
Q 046623 121 ELGEFDMVIMSDVF 134 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~ 134 (218)
..++.|+++.+.-.
T Consensus 104 ~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 104 EFGRIDCLVNNAGI 117 (280)
T ss_dssp HHSCCCEEEEECC-
T ss_pred HcCCCCEEEECCCc
Confidence 12479999976543
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=82.22 E-value=0.38 Score=39.38 Aligned_cols=92 Identities=16% Similarity=0.092 Sum_probs=53.6
Q ss_pred CCCCeEEEECC-C-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c--ccCCC
Q 046623 52 FQNKSVLELGA-G-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L--SELGE 124 (218)
Q Consensus 52 ~~~~~vLDlG~-G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~--~~~~~ 124 (218)
.++++||=.|+ | .|.....+++ .|+ +|++++.++ ..+.+++ .+.. .++ |..+..... . .....
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~~--~~~~~~~~~~~~~~~~~g 235 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACER----LGAK---RGI--NYRSEDFAAVIKAETGQG 235 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCS---EEE--ETTTSCHHHHHHHHHSSC
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCC---EEE--eCCchHHHHHHHHHhCCC
Confidence 56789998853 2 4555555554 455 899999988 7776654 3322 222 323222111 1 01347
Q ss_pred CcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 125 FDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+|+++-+-. ...+....++|+++|+++.+
T Consensus 236 ~Dvvid~~g-------~~~~~~~~~~l~~~G~iv~~ 264 (353)
T 4dup_A 236 VDIILDMIG-------AAYFERNIASLAKDGCLSII 264 (353)
T ss_dssp EEEEEESCC-------GGGHHHHHHTEEEEEEEEEC
T ss_pred ceEEEECCC-------HHHHHHHHHHhccCCEEEEE
Confidence 999885322 12567778899999955444
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=82.20 E-value=7.3 Score=30.09 Aligned_cols=80 Identities=23% Similarity=0.275 Sum_probs=51.1
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHH-hCCCCceEEEEeecCCCCccc-c-----c
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEA-NGLGGRVEVRELVWGSDDLSQ-L-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~-~-----~ 120 (218)
.+++++|=-|++.|. ++..+++.|. +|+.++.++ .++.+.+.+.. .+ .++.++.+|+.+...-. . .
T Consensus 18 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 94 (266)
T 4egf_A 18 LDGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFG--TDVHTVAIDLAEPDAPAELARRAAE 94 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 467778877765542 2333456666 899999988 77766665544 34 44889999988764211 1 1
Q ss_pred cCCCCcEEEEcccc
Q 046623 121 ELGEFDMVIMSDVF 134 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~ 134 (218)
..++.|+++.+.-.
T Consensus 95 ~~g~id~lv~nAg~ 108 (266)
T 4egf_A 95 AFGGLDVLVNNAGI 108 (266)
T ss_dssp HHTSCSEEEEECCC
T ss_pred HcCCCCEEEECCCc
Confidence 12579999976543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=82.20 E-value=8.8 Score=31.73 Aligned_cols=106 Identities=16% Similarity=0.222 Sum_probs=65.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
.+.+||.++.+-|.++..++. ..+++.+.-+. .... ++.+++.. .. ...+ .. ....||+|++-
T Consensus 45 ~~~~~l~~n~~~g~~~~~~~~--~~~~~~~~~~~~~~~~----l~~~~~~~--~~-~~~~---~~----~~~~~d~v~~~ 108 (381)
T 3dmg_A 45 FGERALDLNPGVGWGSLPLEG--RMAVERLETSRAAFRC----LTASGLQA--RL-ALPW---EA----AAGAYDLVVLA 108 (381)
T ss_dssp CSSEEEESSCTTSTTTGGGBT--TBEEEEEECBHHHHHH----HHHTTCCC--EE-CCGG---GS----CTTCEEEEEEE
T ss_pred hCCcEEEecCCCCccccccCC--CCceEEEeCcHHHHHH----HHHcCCCc--cc-cCCc---cC----CcCCCCEEEEE
Confidence 346999999999987766632 23677765444 3333 66677652 22 1111 11 45679999985
Q ss_pred ccccCC-cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHH
Q 046623 132 DVFYDP-EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHEL 176 (218)
Q Consensus 132 ~~~~~~-~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~ 176 (218)
-|=... +..+..+..+.+.|++|| .+++....+...+...+.+
T Consensus 109 ~Pk~k~~~~~~~~l~~~~~~l~~g~--~i~~~g~~~~g~~~~~~~~ 152 (381)
T 3dmg_A 109 LPAGRGTAYVQASLVAAARALRMGG--RLYLAGDKNKGFERYFKEA 152 (381)
T ss_dssp CCGGGCHHHHHHHHHHHHHHEEEEE--EEEEEEEGGGTHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHhCCCCC--EEEEEEccHHHHHHHHHHH
Confidence 442211 245778888889999999 5555555556666666665
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=82.15 E-value=2.5 Score=34.24 Aligned_cols=91 Identities=19% Similarity=0.166 Sum_probs=53.7
Q ss_pred CCCeEEEEC-CC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc--ccCCCCc
Q 046623 53 QNKSVLELG-AG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL--SELGEFD 126 (218)
Q Consensus 53 ~~~~vLDlG-~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~D 126 (218)
++.+||=.| +| .|..+..+++ .|+ +|++++.++ ..+.+++ .+.. .++ |..+...... .....+|
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~vi--~~~~~~~~~~~~~~~~g~D 219 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKK----MGAD---IVL--NHKESLLNQFKTQGIELVD 219 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHH----HTCS---EEE--CTTSCHHHHHHHHTCCCEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCc---EEE--ECCccHHHHHHHhCCCCcc
Confidence 688999884 43 4555555554 455 999999988 7777654 3422 222 2222111111 1234699
Q ss_pred EEEEcccccCCcchHHHHHHHHHHhcCCCceEE
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i 159 (218)
+|+-.- .....++.+.++|+++|+++.
T Consensus 220 vv~d~~------g~~~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 220 YVFCTF------NTDMYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp EEEESS------CHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEECC------CchHHHHHHHHHhccCCEEEE
Confidence 888521 124567788899999995543
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=82.08 E-value=6.9 Score=31.28 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=54.9
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-ccc-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQL-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~-----~~ 121 (218)
..+++||=-|++.|. ++..+++.|. +|++++.++ ..+.+.+.+...+....+.++.+|+.+... ... ..
T Consensus 6 l~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR 84 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 467788888877663 3334456676 899999998 887777777665543368889999876531 111 12
Q ss_pred CCCCcEEEEcccc
Q 046623 122 LGEFDMVIMSDVF 134 (218)
Q Consensus 122 ~~~~D~Iv~~~~~ 134 (218)
.+..|+++.+.-.
T Consensus 85 ~g~id~lv~nAg~ 97 (319)
T 3ioy_A 85 FGPVSILCNNAGV 97 (319)
T ss_dssp TCCEEEEEECCCC
T ss_pred CCCCCEEEECCCc
Confidence 2578999976543
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.47 E-value=13 Score=28.08 Aligned_cols=75 Identities=15% Similarity=0.011 Sum_probs=46.2
Q ss_pred CCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----ccCC
Q 046623 54 NKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----SELG 123 (218)
Q Consensus 54 ~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~~~ 123 (218)
++++|=-|++.|. ++..+++.|. +|+.++.++ .++.+.+.+. ..+.++.+|+.+...- .. ...+
T Consensus 3 ~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~g 76 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLG-----NAVIGIVADLAHHEDVDVAFAAAVEWGG 76 (235)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTSHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhc-----CCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence 4567777766552 2333456666 899999988 7666555441 2388888888765311 10 1125
Q ss_pred CCcEEEEcccc
Q 046623 124 EFDMVIMSDVF 134 (218)
Q Consensus 124 ~~D~Iv~~~~~ 134 (218)
..|+++.+.-.
T Consensus 77 ~id~lvnnAg~ 87 (235)
T 3l6e_A 77 LPELVLHCAGT 87 (235)
T ss_dssp SCSEEEEECCC
T ss_pred CCcEEEECCCC
Confidence 78999976543
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=81.38 E-value=6 Score=29.96 Aligned_cols=77 Identities=16% Similarity=0.191 Sum_probs=46.0
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-ccc-----c
Q 046623 52 FQNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQL-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~-----~ 120 (218)
.+++++|=.|+ +|.++..+ ++.|. +|+.++.++ ..+...+.+... ..+.++.+|+.+... ... .
T Consensus 4 ~~~k~vlVtGa-sggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (251)
T 1zk4_A 4 LDGKVAIITGG-TLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEK 78 (251)
T ss_dssp TTTCEEEETTT-TSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhcc---CceEEEECCCCCHHHHHHHHHHHHH
Confidence 45667776665 55555544 45565 899999887 665544443221 358888888876431 111 0
Q ss_pred cCCCCcEEEEccc
Q 046623 121 ELGEFDMVIMSDV 133 (218)
Q Consensus 121 ~~~~~D~Iv~~~~ 133 (218)
..+++|+++.+..
T Consensus 79 ~~~~id~li~~Ag 91 (251)
T 1zk4_A 79 AFGPVSTLVNNAG 91 (251)
T ss_dssp HHSSCCEEEECCC
T ss_pred HhCCCCEEEECCC
Confidence 1246899997654
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=81.21 E-value=6.5 Score=29.92 Aligned_cols=80 Identities=24% Similarity=0.403 Sum_probs=52.6
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~ 121 (218)
.+++++|=.|++.|. ++..+++.|. +|+.++.++ ..+.+.+.+...+ ..+.++.+|+.+...- .. ..
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467788888866552 3333456666 899999998 7777777766654 4588888888765311 11 11
Q ss_pred CCCCcEEEEcccc
Q 046623 122 LGEFDMVIMSDVF 134 (218)
Q Consensus 122 ~~~~D~Iv~~~~~ 134 (218)
.+..|+++.+.-.
T Consensus 84 ~g~id~li~~Ag~ 96 (253)
T 3qiv_A 84 FGGIDYLVNNAAI 96 (253)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 2479999976543
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=80.92 E-value=5.8 Score=30.54 Aligned_cols=79 Identities=24% Similarity=0.293 Sum_probs=52.2
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----c
Q 046623 52 FQNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~ 120 (218)
.+++++|=.|++ |.++..+ ++.|. +|+.++.++ ..+.+.+.+...+ ..+.++.+|+.+...- .. .
T Consensus 27 l~~k~vlITGas-~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~ 102 (262)
T 3rkr_A 27 LSGQVAVVTGAS-RGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLA 102 (262)
T ss_dssp TTTCEEEESSTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHH
Confidence 567788877765 4444443 55566 899999998 7777777776655 4588888888765321 11 1
Q ss_pred cCCCCcEEEEcccc
Q 046623 121 ELGEFDMVIMSDVF 134 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~ 134 (218)
..++.|+++.+...
T Consensus 103 ~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 103 AHGRCDVLVNNAGV 116 (262)
T ss_dssp HHSCCSEEEECCCC
T ss_pred hcCCCCEEEECCCc
Confidence 12579999976544
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=80.82 E-value=4.5 Score=31.30 Aligned_cols=80 Identities=21% Similarity=0.264 Sum_probs=47.3
Q ss_pred CCCCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCc---c-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc--
Q 046623 51 DFQNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVK---P-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-- 119 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~---~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-- 119 (218)
..+++++|=-|++.| ++..+ ++.|. +|+.++.+ . .++.+.+.+...+ .++.++.+|+.+...- ..
T Consensus 8 ~l~~k~vlVTGas~G-IG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~ 83 (262)
T 3ksu_A 8 DLKNKVIVIAGGIKN-LGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFD 83 (262)
T ss_dssp CCTTCEEEEETCSSH-HHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHH
T ss_pred CCCCCEEEEECCCch-HHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHH
Confidence 356778887776655 44443 44555 78887654 3 4444444444444 4588888898765311 11
Q ss_pred ---ccCCCCcEEEEcccc
Q 046623 120 ---SELGEFDMVIMSDVF 134 (218)
Q Consensus 120 ---~~~~~~D~Iv~~~~~ 134 (218)
...++.|+++.+.-.
T Consensus 84 ~~~~~~g~iD~lvnnAg~ 101 (262)
T 3ksu_A 84 FAEKEFGKVDIAINTVGK 101 (262)
T ss_dssp HHHHHHCSEEEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 112579999976543
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.74 E-value=6 Score=30.78 Aligned_cols=81 Identities=25% Similarity=0.345 Sum_probs=51.4
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecC-------------cc-hHHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 51 DFQNKSVLELGAGAGL---PGLTAARLGATRVVLTDV-------------KP-LLPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~-------------~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
..+++++|=-|++.|. ++..+++.|. +|+.+|. ++ .++.+.+.+...+ .++.++.+|+.+
T Consensus 12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~ 88 (280)
T 3pgx_A 12 SLQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--RKALTRVLDVRD 88 (280)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTC
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEEcCCCC
Confidence 3677888888877653 3334466676 8999987 44 5566555555554 458888888876
Q ss_pred CCcc-cc-----ccCCCCcEEEEcccc
Q 046623 114 DDLS-QL-----SELGEFDMVIMSDVF 134 (218)
Q Consensus 114 ~~~~-~~-----~~~~~~D~Iv~~~~~ 134 (218)
...- .. ...++.|+++.+.-.
T Consensus 89 ~~~v~~~~~~~~~~~g~id~lvnnAg~ 115 (280)
T 3pgx_A 89 DAALRELVADGMEQFGRLDVVVANAGV 115 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5311 11 112589999976544
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.71 E-value=5 Score=30.93 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=50.4
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-ccc-----c
Q 046623 52 FQNKSVLELGAGAGLPGLT----AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQL-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~----l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~-----~ 120 (218)
.+++++|=.|++.| ++.. +++.|. +|+.++.++ ..+.+.+.+........+.++.+|+.+... ... .
T Consensus 5 ~~~k~vlVTGas~g-IG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (267)
T 2gdz_A 5 VNGKVALVTGAAQG-IGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVD 82 (267)
T ss_dssp CTTCEEEEETTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCc-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 35667887776544 4443 355665 899999887 665554444321111347788888876431 111 1
Q ss_pred cCCCCcEEEEcccccCCcchH
Q 046623 121 ELGEFDMVIMSDVFYDPEEMV 141 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~~~~~ 141 (218)
..++.|+++.+.-....++..
T Consensus 83 ~~g~id~lv~~Ag~~~~~~~~ 103 (267)
T 2gdz_A 83 HFGRLDILVNNAGVNNEKNWE 103 (267)
T ss_dssp HHSCCCEEEECCCCCCSSSHH
T ss_pred HcCCCCEEEECCCCCChhhHH
Confidence 124789999876544334333
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=80.57 E-value=7.1 Score=30.41 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=52.8
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-c-----cc
Q 046623 51 DFQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-Q-----LS 120 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~-----~~ 120 (218)
+++++++|=-|+++|. .+..+++.|+ +|+.++.++ ..+.+.. +...+ .++.++.+|+.+...- . ..
T Consensus 4 ~L~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~-~~~~~--~~~~~~~~Dv~~~~~v~~~v~~~~~ 79 (258)
T 4gkb_A 4 NLQDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFLDA-LAQRQ--PRATYLPVELQDDAQCRDAVAQTIA 79 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHHHH-HHHHC--TTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHHHH-HHhcC--CCEEEEEeecCCHHHHHHHHHHHHH
Confidence 3678899988888874 3445577777 899999887 6554443 33334 3478888898765311 1 12
Q ss_pred cCCCCcEEEEcccc
Q 046623 121 ELGEFDMVIMSDVF 134 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~ 134 (218)
..++.|+++.|.-.
T Consensus 80 ~~G~iDiLVNnAGi 93 (258)
T 4gkb_A 80 TFGRLDGLVNNAGV 93 (258)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HhCCCCEEEECCCC
Confidence 33789999976543
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=80.40 E-value=3 Score=35.27 Aligned_cols=93 Identities=16% Similarity=0.063 Sum_probs=54.3
Q ss_pred CCCCeEEEECC-C-CCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc------------
Q 046623 52 FQNKSVLELGA-G-AGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL------------ 116 (218)
Q Consensus 52 ~~~~~vLDlG~-G-~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------------ 116 (218)
.++.+||=+|+ | .|..++.+++....++++++.++ .++.+++ .|.. .++ |..+...
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~----lGa~---~vi--~~~~~d~~~~~~~~~~~~~ 297 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRA----MGAE---AII--DRNAEGYRFWKDENTQDPK 297 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HTCC---EEE--ETTTTTCCSEEETTEECHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHh----hCCc---EEE--ecCcCcccccccccccchH
Confidence 57889998887 3 55666666654334888888777 7666643 3432 122 2221110
Q ss_pred ------ccc---ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 117 ------SQL---SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 117 ------~~~---~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
..+ .....+|+|+-.-. ...+..+.++++++|+++++
T Consensus 298 ~~~~~~~~i~~~t~g~g~Dvvid~~G-------~~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 298 EWKRFGKRIRELTGGEDIDIVFEHPG-------RETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECSC-------HHHHHHHHHHEEEEEEEEES
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEcCC-------chhHHHHHHHhhCCcEEEEE
Confidence 011 01247998884211 25677888899999955543
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.32 E-value=5.1 Score=31.39 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=50.1
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC-Cc-ccc-----
Q 046623 52 FQNKSVLELGAGAGLPGLT----AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD-DL-SQL----- 119 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~----l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~-~~~----- 119 (218)
.+++++|=-|++.| ++.. +++.|. +|+.++.++ ..+.+.+.+...+- .++.++.+|+.+. .. ...
T Consensus 10 ~~~k~vlITGas~G-IG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~v~~~~~~~~ 86 (311)
T 3o26_A 10 TKRRCAVVTGGNKG-IGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQLDVTDPIATMSSLADFIK 86 (311)
T ss_dssp --CCEEEESSCSSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTC-CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEccCCCcHHHHHHHHHHHH
Confidence 35667776666544 4444 355666 899999998 77666666655432 3588999998875 21 111
Q ss_pred ccCCCCcEEEEcccc
Q 046623 120 SELGEFDMVIMSDVF 134 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~ 134 (218)
...++.|+++.+.-.
T Consensus 87 ~~~g~iD~lv~nAg~ 101 (311)
T 3o26_A 87 THFGKLDILVNNAGV 101 (311)
T ss_dssp HHHSSCCEEEECCCC
T ss_pred HhCCCCCEEEECCcc
Confidence 112589999987654
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=80.12 E-value=2.2 Score=34.72 Aligned_cols=92 Identities=12% Similarity=0.032 Sum_probs=52.5
Q ss_pred CCCCeEEEECCC--CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc---ccCC
Q 046623 52 FQNKSVLELGAG--AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL---SELG 123 (218)
Q Consensus 52 ~~~~~vLDlG~G--~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~---~~~~ 123 (218)
.++++||-.|++ .|.....++ ..|+ +|++++.++ ..+.+++ .+.. .+ .|..+.... .. ....
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~g~~---~~--~~~~~~~~~~~~~~~~~~~ 230 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEK----LGAA---AG--FNYKKEDFSEATLKFTKGA 230 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----HTCS---EE--EETTTSCHHHHHHHHTTTS
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCc---EE--EecCChHHHHHHHHHhcCC
Confidence 567899998843 444444444 4455 899999888 7766632 2322 12 233332211 11 1124
Q ss_pred CCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 124 EFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.+|+++-+.. ...+....++|+++|+++.+
T Consensus 231 ~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 231 GVNLILDCIG-------GSYWEKNVNCLALDGRWVLY 260 (354)
T ss_dssp CEEEEEESSC-------GGGHHHHHHHEEEEEEEEEC
T ss_pred CceEEEECCC-------chHHHHHHHhccCCCEEEEE
Confidence 6899885332 12466678899999954444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 218 | ||||
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 7e-07 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 4e-06 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 1e-05 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 6e-04 |
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.3 bits (109), Expect = 7e-07
Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELV 110
F++K VL++G+G G+ + AA+ GA +V+ + + + V+AN L V
Sbjct: 31 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVT----- 85
Query: 111 WGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGL 143
+ ++ E +I+S+ +
Sbjct: 86 IIKGKVEEVELPVEKVDIIISEWMGYCLFYESM 118
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (103), Expect = 4e-06
Identities = 16/58 (27%), Positives = 32/58 (55%)
Query: 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRE 108
F++K VL++G G G+ + AA+ GA +V+ D +L ++ + N L + + +
Sbjct: 33 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIK 90
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.9 bits (100), Expect = 1e-05
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLG 101
F++K VL++G G G+ + AA+ GA V+ D+ ++ VE NG
Sbjct: 36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFS 86
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 37.5 bits (86), Expect = 6e-04
Identities = 22/143 (15%), Positives = 45/143 (31%), Gaps = 9/143 (6%)
Query: 49 HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPL-LPGLINNVEANGLGGRVEVR 107
++ V+++ AG G L A G +V+ + P L+ N+ N + R+
Sbjct: 103 KVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY 162
Query: 108 ELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR-HTVVWAVSEVR 166
D D ++M E + ++ + H V +
Sbjct: 163 N-----MDNRDFPGENIADRILMGY-VVRTHEFIPKALSIAKDGAIIHYHNTV-PEKLMP 215
Query: 167 TRTGDCLHELIMSQGFRVIELTC 189
+ + G+ V +L
Sbjct: 216 REPFETFKRITKEYGYDVEKLNE 238
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 218 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.82 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.81 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.8 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.79 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.77 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.76 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.72 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.71 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.71 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.7 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.69 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.68 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.67 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.67 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.67 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.67 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.67 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.67 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.67 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.65 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.64 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.64 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.63 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.63 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.61 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.61 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.6 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.6 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.6 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.6 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.6 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.6 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.6 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.58 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.58 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.58 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.58 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.58 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.56 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.55 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.55 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.54 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.54 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.54 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.53 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.53 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.52 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.51 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.5 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.49 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.48 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.48 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.47 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.46 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.44 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.44 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.43 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.43 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.42 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.42 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.41 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.4 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.39 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.34 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 99.34 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.3 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 99.24 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.24 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.19 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.19 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.17 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.12 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.09 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.07 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.03 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.89 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.83 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.83 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.81 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.78 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.77 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.77 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.72 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.67 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.65 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.58 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.58 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.56 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.55 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.52 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.41 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.39 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.37 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.35 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.32 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.31 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.27 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.26 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.15 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.04 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.03 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 97.68 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 97.52 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 97.47 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 97.37 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 97.25 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.19 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 97.12 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 97.02 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.68 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.14 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.95 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.93 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.91 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.89 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.71 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.69 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.24 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.16 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 95.14 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.11 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.0 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.77 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 94.47 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.26 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.69 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 93.66 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 93.51 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 93.36 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 93.07 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 92.9 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 92.63 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 92.48 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 92.35 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 92.35 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 92.15 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 91.85 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 91.77 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 91.52 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 91.5 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 91.41 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 91.34 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 91.27 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 90.52 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 90.3 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 90.29 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 90.24 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 90.22 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 90.17 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 90.02 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 89.96 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 89.95 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 89.89 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 89.88 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 89.52 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 89.48 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 88.78 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 88.63 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 88.58 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 88.54 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 88.41 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 88.2 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 87.87 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 87.87 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 87.85 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 87.75 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 87.68 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 87.67 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 87.66 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 87.65 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 87.39 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 87.19 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 87.19 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 86.96 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 86.96 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 86.87 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 86.87 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 85.61 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 84.43 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 84.01 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 83.32 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 83.19 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 82.02 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 81.78 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 81.66 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 81.54 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 81.46 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 81.26 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 81.09 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 80.88 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 80.33 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 80.16 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.82 E-value=1.3e-19 Score=140.77 Aligned_cols=140 Identities=19% Similarity=0.143 Sum_probs=109.0
Q ss_pred HHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccc
Q 046623 42 LAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLS 120 (218)
Q Consensus 42 l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (218)
+.+++...+..++.+|||||||+|.++..+++.++ +|+++|+|+ +++.|++++...+.. +++++.+|+.+.+.
T Consensus 4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~-~i~~~~~d~~~l~~---- 77 (231)
T d1vl5a_ 4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPF---- 77 (231)
T ss_dssp HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCS----
T ss_pred HHHHHHhcCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhcccccccc-cccccccccccccc----
Confidence 34444444446778999999999999999998876 999999999 999999999888764 58999999887654
Q ss_pred cCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc---------------------CChHHHHHHHHHh
Q 046623 121 ELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR---------------------TRTGDCLHELIMS 179 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~---------------------~~~~~~~~~~~~~ 179 (218)
+.++||+|++..++++.+++.++++++.++|+|||.+++....... ....+.+..++++
T Consensus 78 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (231)
T d1vl5a_ 78 TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEE 157 (231)
T ss_dssp CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHH
T ss_pred cccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHH
Confidence 6789999999999999999999999999999999955554322211 1122334455588
Q ss_pred CCcEEEEE
Q 046623 180 QGFRVIEL 187 (218)
Q Consensus 180 ~gf~~~~~ 187 (218)
.||.+.++
T Consensus 158 aGf~~~~~ 165 (231)
T d1vl5a_ 158 AGFELEEL 165 (231)
T ss_dssp HTCEEEEE
T ss_pred CCCEEEEE
Confidence 89987765
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.81 E-value=4.6e-19 Score=134.73 Aligned_cols=140 Identities=15% Similarity=0.161 Sum_probs=111.1
Q ss_pred EEEEcCeEEEEEeccCcCCCCccccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecC
Q 046623 5 EIEIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDV 84 (218)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~ 84 (218)
+..+.|..++..+.++||.+...+ .++..|.+.+. ..++.+|||+|||+|.+++.+++.+. +|+++|+
T Consensus 15 ~~~~~g~~~~~~t~~gvF~~~~~d--------~~t~lLi~~l~---~~~~~~VLDiGcG~G~~~~~la~~~~-~v~~iD~ 82 (194)
T d1dusa_ 15 EDILRGKKLKFKTDSGVFSYGKVD--------KGTKILVENVV---VDKDDDILDLGCGYGVIGIALADEVK-STTMADI 82 (194)
T ss_dssp EEEETTEEEEEEEETTSTTTTSCC--------HHHHHHHHHCC---CCTTCEEEEETCTTSHHHHHHGGGSS-EEEEEES
T ss_pred EEEECCeeEEEEcCCCccCCCCcC--------HHHHHHHHhCC---cCCCCeEEEEeecCChhHHHHHhhcc-ccceeee
Confidence 345678889999999998765433 44555555543 35788999999999999999988754 9999999
Q ss_pred cc-hHHHHHHHHHHhCCCC-ceEEEEeecCCCCccccccCCCCcEEEEcccccCCcc-hHHHHHHHHHHhcCCCceEEEE
Q 046623 85 KP-LLPGLINNVEANGLGG-RVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEE-MVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 85 ~~-~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~-~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
|+ +++.+++|++.+++.+ ++++..+|+.+. . +.++||+|++++|++...+ .+.+++.+.++|+|||.+++..
T Consensus 83 s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~-~----~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 83 NRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-V----KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp CHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-C----TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHhCCccceEEEEEcchhhh-h----ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence 99 9999999999998764 588888887653 2 5578999999999887554 5789999999999999554443
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.80 E-value=1.6e-18 Score=138.86 Aligned_cols=107 Identities=16% Similarity=0.113 Sum_probs=94.5
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 50 FDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 50 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
+..++.+|||+|||+|.++..+++....+|+++|+++ +++.++++....++.+++++..+|+.+.+. +.++||+|
T Consensus 64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~----~~~sfD~V 139 (282)
T d2o57a1 64 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC----EDNSYDFI 139 (282)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS----CTTCEEEE
T ss_pred CCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccc----cccccchh
Confidence 4467889999999999999999765334999999999 999999999999998889999999987754 66899999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
++..++++.++...++.++.++|||||.+++.
T Consensus 140 ~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~ 171 (282)
T d2o57a1 140 WSQDAFLHSPDKLKVFQECARVLKPRGVMAIT 171 (282)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hccchhhhccCHHHHHHHHHHhcCCCcEEEEE
Confidence 99999999999999999999999999955544
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.79 E-value=1.7e-18 Score=135.08 Aligned_cols=103 Identities=16% Similarity=0.149 Sum_probs=91.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..++.+|||+|||+|.++..+++.+. +|+++|+|+ +++.|+++...++.. ++.++.+|..+.+. +.++||+|+
T Consensus 14 ~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~-~~~~~~~d~~~~~~----~~~~fD~v~ 87 (234)
T d1xxla_ 14 CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPF----PDDSFDIIT 87 (234)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCS----CTTCEEEEE
T ss_pred CCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhcccccc-cccccccccccccc----cccccceee
Confidence 36788999999999999999998875 999999999 999999999988875 49999999877654 678999999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i 159 (218)
+..++++.+++..+++++.++|||||.+++
T Consensus 88 ~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~ 117 (234)
T d1xxla_ 88 CRYAAHHFSDVRKAVREVARVLKQDGRFLL 117 (234)
T ss_dssp EESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred eeceeecccCHHHHHHHHHHeeCCCcEEEE
Confidence 999999999999999999999999994444
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=1.7e-18 Score=136.55 Aligned_cols=142 Identities=21% Similarity=0.330 Sum_probs=107.1
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEe
Q 046623 31 TGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVREL 109 (218)
Q Consensus 31 ~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~ 109 (218)
-|...++++..+.+++.+. ..++++|||+|||+|.+++.+++.|. +|+++|+++ +++.|++|++.+++. ..+..+
T Consensus 99 FGTG~H~TT~l~l~~l~~~-~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~--~~~~~~ 174 (254)
T d2nxca1 99 FGTGHHETTRLALKALARH-LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEG 174 (254)
T ss_dssp ---CCSHHHHHHHHHHHHH-CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEES
T ss_pred cCccccchhhHHHHHHHhh-cCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCc--eeEEec
Confidence 3555677888888888763 35788999999999999999988876 899999999 999999999999976 567776
Q ss_pred ecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 110 VWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 110 d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
|+.+. .+.++||+|+++-.. .....+++.+.++|||||. ++++........+..+.+ .+.||.+.+.
T Consensus 175 d~~~~-----~~~~~fD~V~ani~~---~~l~~l~~~~~~~LkpGG~--lilSgil~~~~~~v~~~~-~~~Gf~~~~~ 241 (254)
T d2nxca1 175 SLEAA-----LPFGPFDLLVANLYA---ELHAALAPRYREALVPGGR--ALLTGILKDRAPLVREAM-AGAGFRPLEE 241 (254)
T ss_dssp CHHHH-----GGGCCEEEEEEECCH---HHHHHHHHHHHHHEEEEEE--EEEEEEEGGGHHHHHHHH-HHTTCEEEEE
T ss_pred ccccc-----ccccccchhhhcccc---ccHHHHHHHHHHhcCCCcE--EEEEecchhhHHHHHHHH-HHCCCEEEEE
Confidence 65432 256789999996443 3467888999999999993 333333334444545555 8999998776
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=3.3e-18 Score=134.31 Aligned_cols=107 Identities=16% Similarity=0.062 Sum_probs=93.9
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
....++.+|||||||+|..+..+++....+|+++|+|+ +++.++++.+..++.++++++.+|+.+.. +.++||+
T Consensus 29 ~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~-----~~~~fD~ 103 (245)
T d1nkva_ 29 LRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-----ANEKCDV 103 (245)
T ss_dssp TCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-----CSSCEEE
T ss_pred cCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc-----ccCceeE
Confidence 44467899999999999999998765445999999999 99999999999999888999999987652 5688999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|++..++++..+...+++++.++|||||.+++.
T Consensus 104 v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~ 136 (245)
T d1nkva_ 104 AACVGATWIAGGFAGAEELLAQSLKPGGIMLIG 136 (245)
T ss_dssp EEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEE
T ss_pred EEEEehhhccCCHHHHHHHHHHHcCcCcEEEEE
Confidence 999999999999999999999999999955444
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.72 E-value=2.2e-17 Score=127.32 Aligned_cols=113 Identities=20% Similarity=0.181 Sum_probs=91.1
Q ss_pred HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc
Q 046623 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL 119 (218)
Q Consensus 41 ~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (218)
.+..++.+. ..++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|+++....+.. +.++..|..+...
T Consensus 26 ~~~~~~~~~-l~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~~--~~~~~~d~~~l~~--- 98 (226)
T d1ve3a1 26 TLEPLLMKY-MKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESN--VEFIVGDARKLSF--- 98 (226)
T ss_dssp HHHHHHHHS-CCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCC--CEEEECCTTSCCS---
T ss_pred HHHHHHHHh-cCCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhcccccc--ccccccccccccc---
Confidence 344444442 23567999999999999999998866 899999999 999999998777643 6778888777654
Q ss_pred ccCCCCcEEEEcccccCCc--chHHHHHHHHHHhcCCCceEEEE
Q 046623 120 SELGEFDMVIMSDVFYDPE--EMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~~~~~--~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+.++||+|++..++++.+ +..++++.+.++|||||.+++..
T Consensus 99 -~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~ 141 (226)
T d1ve3a1 99 -EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYF 141 (226)
T ss_dssp -CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -cCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEE
Confidence 668999999999998864 67889999999999999555443
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=9.9e-17 Score=127.38 Aligned_cols=157 Identities=15% Similarity=0.200 Sum_probs=112.6
Q ss_pred EEcCeEEEEEeccCcCCCCccccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHH-hCCCeEEEecCc
Q 046623 7 EIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAAR-LGATRVVLTDVK 85 (218)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~-~~~~~v~~~D~~ 85 (218)
++.|.++. ..++|+-|.++. ..+.+.+.+....++.+|||+|||+|..++.++. .+..+|+++|+|
T Consensus 75 ~F~~~~~~--v~~~VlIPRpeT-----------E~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis 141 (274)
T d2b3ta1 75 EFWSLPLF--VSPATLIPRPDT-----------ECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRM 141 (274)
T ss_dssp EETTEEEE--CCTTSCCCCTTH-----------HHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSS
T ss_pred EEeeeEEE--Eeccccccccch-----------hhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccch
Confidence 44554444 455899998633 3344444442334567899999999999999865 455799999999
Q ss_pred c-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCc-------------------------c
Q 046623 86 P-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPE-------------------------E 139 (218)
Q Consensus 86 ~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~-------------------------~ 139 (218)
+ +++.|++|++.+++. +++++..|+.... +..+||+|++|+|+.... .
T Consensus 142 ~~Al~~A~~Na~~~~~~-~v~~~~~d~~~~~-----~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~ 215 (274)
T d2b3ta1 142 PDAVSLAQRNAQHLAIK-NIHILQSDWFSAL-----AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMAD 215 (274)
T ss_dssp HHHHHHHHHHHHHHTCC-SEEEECCSTTGGG-----TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHH
T ss_pred hHHHhHHHHHHHHhCcc-cceeeeccccccc-----CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchH
Confidence 9 999999999999985 5999999986542 456899999999986432 1
Q ss_pred hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEE
Q 046623 140 MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIE 186 (218)
Q Consensus 140 ~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~ 186 (218)
...++..+.++|+||| .++.... ....+.+..++.+.||...+
T Consensus 216 ~~~i~~~a~~~L~~~G--~l~lEig--~~q~~~v~~~l~~~gf~~i~ 258 (274)
T d2b3ta1 216 IVHIIEQSRNALVSGG--FLLLEHG--WQQGEAVRQAFILAGYHDVE 258 (274)
T ss_dssp HHHHHHHHGGGEEEEE--EEEEECC--SSCHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHhcCCCC--EEEEEEC--chHHHHHHHHHHHCCCCeEE
Confidence 4567888888999999 3333222 23345556666888986433
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=5.5e-17 Score=125.46 Aligned_cols=132 Identities=14% Similarity=0.070 Sum_probs=102.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..+++.+..+|+++|+|+ +++.|+++++..+.. ++++..+|+.+... +.++||+|++
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~-~~~f~~~d~~~~~~----~~~~fD~I~~ 133 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKR-VRNYFCCGLQDFTP----EPDSYDVIWI 133 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGG-EEEEEECCGGGCCC----CSSCEEEEEE
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccc-cccccccccccccc----cccccccccc
Confidence 45679999999999999987655566999999999 999999998776553 47899988877654 5689999999
Q ss_pred cccccCCcc--hHHHHHHHHHHhcCCCceEEEEEeecc-----------CChHHHHHHHHHhCCcEEEEEE
Q 046623 131 SDVFYDPEE--MVGLGKTLKRVCGTGRHTVVWAVSEVR-----------TRTGDCLHELIMSQGFRVIELT 188 (218)
Q Consensus 131 ~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~~~~~~~-----------~~~~~~~~~~~~~~gf~~~~~~ 188 (218)
..++++..+ ..++++.+.++|+|||.+++....... ....+.+..++.+.||.+.+..
T Consensus 134 ~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~ 204 (222)
T d2ex4a1 134 QWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 204 (222)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred ccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence 999998754 458999999999999944443221111 0134556666699999988763
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.70 E-value=5.4e-17 Score=122.30 Aligned_cols=126 Identities=21% Similarity=0.207 Sum_probs=97.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..++.+|||+|||+|.+++.+++.+ .+|+++|+++ +++.+++|++.+++.++++++.+|..+... ....||.|+
T Consensus 31 ~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~----~~~~~D~v~ 105 (186)
T d1l3ia_ 31 PGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC----KIPDIDIAV 105 (186)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT----TSCCEEEEE
T ss_pred CCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccc----ccCCcCEEE
Confidence 3578899999999999999998765 4999999999 999999999999998889999988654432 557899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
++... .....+++.+.+.|+|||.+++.. ...+......+.+ ...++....+
T Consensus 106 ~~~~~---~~~~~~~~~~~~~LkpgG~lvi~~--~~~e~~~~~~~~l-~~~~~~~~~~ 157 (186)
T d1l3ia_ 106 VGGSG---GELQEILRIIKDKLKPGGRIIVTA--ILLETKFEAMECL-RDLGFDVNIT 157 (186)
T ss_dssp ESCCT---TCHHHHHHHHHHTEEEEEEEEEEE--CBHHHHHHHHHHH-HHTTCCCEEE
T ss_pred EeCcc---ccchHHHHHHHHHhCcCCEEEEEe--eccccHHHHHHHH-HHcCCCeEEE
Confidence 97664 346789999999999999443332 2223344444444 7777765444
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.69 E-value=6e-17 Score=125.54 Aligned_cols=125 Identities=14% Similarity=0.117 Sum_probs=97.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++++|||+|||+|.++..+++.+. +|+++|+|+ +++.++++.. .++.+..+|+.+.. ..++||+|++
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~-----~~~~fD~I~~ 87 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQ-----LPRRYDNIVL 87 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCC-----CSSCEEEEEE
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc-----cccccccccccccc-----cccccccccc
Confidence 5677999999999999999988776 899999999 9999886642 34888888776543 4578999999
Q ss_pred cccccCCcchHHHHHHHH-HHhcCCCceEEEEEee-----------------------------ccCChHHHHHHHHHhC
Q 046623 131 SDVFYDPEEMVGLGKTLK-RVCGTGRHTVVWAVSE-----------------------------VRTRTGDCLHELIMSQ 180 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~-~lL~~gG~~~i~~~~~-----------------------------~~~~~~~~~~~~~~~~ 180 (218)
..+++|..++..++..+. ++|+|||.+++.+... .+....+.+..++.+.
T Consensus 88 ~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~ 167 (225)
T d2p7ia1 88 THVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRA 167 (225)
T ss_dssp ESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHT
T ss_pred cceeEecCCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHC
Confidence 999999999999999998 7899999444433210 0112345566666999
Q ss_pred CcEEEEE
Q 046623 181 GFRVIEL 187 (218)
Q Consensus 181 gf~~~~~ 187 (218)
||.+...
T Consensus 168 Gf~i~~~ 174 (225)
T d2p7ia1 168 GLQVTYR 174 (225)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
Confidence 9998775
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.68 E-value=4.2e-16 Score=122.96 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=102.0
Q ss_pred HHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccC
Q 046623 44 QFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSEL 122 (218)
Q Consensus 44 ~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 122 (218)
.++...+..++.+|||+|||+|.++..++..+..+|+++|+++ +++.|++++... .++++...|+.+... +.
T Consensus 84 ~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~----~~ 156 (254)
T d1xtpa_ 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATL----PP 156 (254)
T ss_dssp HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCC----CS
T ss_pred HHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEcccccccc----CC
Confidence 3444444456789999999999999987655455899999999 999998876433 347888888776554 56
Q ss_pred CCCcEEEEcccccCCcc--hHHHHHHHHHHhcCCCceEEEEEeecc------------CChHHHHHHHHHhCCcEEEEEE
Q 046623 123 GEFDMVIMSDVFYDPEE--MVGLGKTLKRVCGTGRHTVVWAVSEVR------------TRTGDCLHELIMSQGFRVIELT 188 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~~~~~~~------------~~~~~~~~~~~~~~gf~~~~~~ 188 (218)
++||+|++..+++|..+ ..++++.+.++|+|||.+++.-..... ....+.+..++.+.||.+++..
T Consensus 157 ~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~ 236 (254)
T d1xtpa_ 157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA 236 (254)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred CccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEE
Confidence 78999999999998754 468899999999999944443211110 1134567777799999987763
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.67 E-value=5.4e-16 Score=122.19 Aligned_cols=147 Identities=19% Similarity=0.187 Sum_probs=108.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.+.++|||||||+|..+..+++. +..+++++|.+++++.+++++...+..+++.++.+|+.+.. ..+||+|++
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~------~~~~D~v~~ 152 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPL------PRKADAIIL 152 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCC------SSCEEEEEE
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhc------ccchhheee
Confidence 34579999999999999999765 34689999984499999999999998888999999976532 356999999
Q ss_pred cccccCCcc--hHHHHHHHHHHhcCCCceEEEEEeec----------------------cCChHHHHHHHHHhCCcEEEE
Q 046623 131 SDVFYDPEE--MVGLGKTLKRVCGTGRHTVVWAVSEV----------------------RTRTGDCLHELIMSQGFRVIE 186 (218)
Q Consensus 131 ~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~~~~~~----------------------~~~~~~~~~~~~~~~gf~~~~ 186 (218)
+.++|+..+ ...+++++++.|+|||.+++.-.... +....+.+..++++.||.+.+
T Consensus 153 ~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~ 232 (253)
T d1tw3a2 153 SFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEE 232 (253)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred ccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEE
Confidence 999998654 45789999999999995555422110 011345556667999999988
Q ss_pred EEccCCCCCCCceeEEEe
Q 046623 187 LTCQLGGGCPEAFAVYEL 204 (218)
Q Consensus 187 ~~~~~~~~~~~~~~l~~~ 204 (218)
+...+.+..+....++.+
T Consensus 233 v~~~~~p~~~~~~~li~~ 250 (253)
T d1tw3a2 233 VRQLPSPTIPYDLSLLVL 250 (253)
T ss_dssp EEEEECSSSSCEEEEEEE
T ss_pred EEECCCCCCCccEEEEEE
Confidence 743334445555555544
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.67 E-value=1.5e-16 Score=124.77 Aligned_cols=110 Identities=21% Similarity=0.216 Sum_probs=88.2
Q ss_pred HHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccc
Q 046623 42 LAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLS 120 (218)
Q Consensus 42 l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (218)
+...+......+.++|||+|||+|..+..+++.+. +|+|+|+|+ +++.|+++++..+. ++++..+|+.+..
T Consensus 30 ~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~----- 101 (251)
T d1wzna1 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIA----- 101 (251)
T ss_dssp HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCC-----
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccc--cchheehhhhhcc-----
Confidence 33344444445677999999999999999999876 999999999 99999999988775 4899999987665
Q ss_pred cCCCCcEEEEc-ccccCC--cchHHHHHHHHHHhcCCCceEE
Q 046623 121 ELGEFDMVIMS-DVFYDP--EEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 121 ~~~~~D~Iv~~-~~~~~~--~~~~~~l~~~~~lL~~gG~~~i 159 (218)
..++||+|++. ..+++. ++..++++.+.++|+|||.+++
T Consensus 102 ~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii 143 (251)
T d1wzna1 102 FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143 (251)
T ss_dssp CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence 34689999985 555553 5677999999999999995544
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.67 E-value=3.9e-16 Score=122.38 Aligned_cols=124 Identities=13% Similarity=0.072 Sum_probs=98.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
-.+|.+|||+|||+|.++..+++. + ..+|+++|.++ +++.|++|++..+...++++...|+.+.. +...||.
T Consensus 83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~-----~~~~fD~ 157 (250)
T d1yb2a1 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI-----SDQMYDA 157 (250)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC-----CSCCEEE
T ss_pred CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc-----ccceeee
Confidence 368899999999999999999764 3 45999999999 99999999998776677999998887653 5678999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
|+++ ..++..+++.+.++|||||.+++++. .-.+..+..+.+ ++.||...++
T Consensus 158 V~ld-----~p~p~~~l~~~~~~LKpGG~lv~~~P--~i~Qv~~~~~~l-~~~gf~~i~~ 209 (250)
T d1yb2a1 158 VIAD-----IPDPWNHVQKIASMMKPGSVATFYLP--NFDQSEKTVLSL-SASGMHHLET 209 (250)
T ss_dssp EEEC-----CSCGGGSHHHHHHTEEEEEEEEEEES--SHHHHHHHHHHS-GGGTEEEEEE
T ss_pred eeec-----CCchHHHHHHHHHhcCCCceEEEEeC--CcChHHHHHHHH-HHCCCceeEE
Confidence 9983 35667889999999999995544433 224466666666 8899976554
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.67 E-value=8e-16 Score=122.87 Aligned_cols=107 Identities=11% Similarity=-0.004 Sum_probs=87.9
Q ss_pred hcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCC
Q 046623 47 STHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 47 ~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
......++.+|||||||+|.++..+++....+|+++|+|+ +++.+++.++..++...+.+...|..+ ..++|
T Consensus 46 ~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~-------~~~~f 118 (280)
T d2fk8a1 46 DKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-------FAEPV 118 (280)
T ss_dssp TTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-------CCCCC
T ss_pred HHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh-------hccch
Confidence 3344467899999999999999998765334999999999 999999999999987777777655432 45789
Q ss_pred cEEEEcccccCCc--chHHHHHHHHHHhcCCCceEEE
Q 046623 126 DMVIMSDVFYDPE--EMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 126 D~Iv~~~~~~~~~--~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|.|++..++.+.. ....+++.+.++|||||.+++-
T Consensus 119 D~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~ 155 (280)
T d2fk8a1 119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQ 155 (280)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred hhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEE
Confidence 9999999998874 4589999999999999966554
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.67 E-value=2.7e-15 Score=119.90 Aligned_cols=116 Identities=12% Similarity=0.042 Sum_probs=94.2
Q ss_pred HHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc
Q 046623 40 LILAQFIST-HFDFQNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL 116 (218)
Q Consensus 40 ~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 116 (218)
....+++.. ....+|.+|||||||+|.+++.++ +.|+ +|+++++|+ .++.+++.++..+..+++.+...|+..
T Consensus 48 ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~--- 123 (285)
T d1kpga_ 48 IAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ--- 123 (285)
T ss_dssp HHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG---
T ss_pred HHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc---
Confidence 344444444 444788999999999999999876 5564 999999999 999999999999988889999887643
Q ss_pred cccccCCCCcEEEEcccccCC--cchHHHHHHHHHHhcCCCceEEEEEe
Q 046623 117 SQLSELGEFDMVIMSDVFYDP--EEMVGLGKTLKRVCGTGRHTVVWAVS 163 (218)
Q Consensus 117 ~~~~~~~~~D~Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~~~ 163 (218)
..++||.|++...+.+. .....+++.+.++|+|||++++....
T Consensus 124 ----~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 124 ----FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp ----CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred ----ccccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 34689999999999886 45689999999999999976665443
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.67 E-value=1.8e-15 Score=121.28 Aligned_cols=114 Identities=12% Similarity=0.052 Sum_probs=91.9
Q ss_pred HHHHHH-hcCCCCCCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc
Q 046623 41 ILAQFI-STHFDFQNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS 117 (218)
Q Consensus 41 ~l~~~l-~~~~~~~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (218)
...+++ ......+|.+|||||||+|.+++.++ +.|+ +|+++++|+ .++.+++.++..++.+++.+...|.. .
T Consensus 48 ~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~---~- 122 (291)
T d1kpia_ 48 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---E- 122 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG---G-
T ss_pred HHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc---c-
Confidence 333444 33445788999999999999999886 5565 999999999 99999999999998888888876642 1
Q ss_pred ccccCCCCcEEEEcccccCCcc---------hHHHHHHHHHHhcCCCceEEEEE
Q 046623 118 QLSELGEFDMVIMSDVFYDPEE---------MVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 118 ~~~~~~~~D~Iv~~~~~~~~~~---------~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
..++||.|++..++.|..+ ...+++.+.++|||||++++...
T Consensus 123 ---~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i 173 (291)
T d1kpia_ 123 ---FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 173 (291)
T ss_dssp ---CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred ---cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence 4578999999999987644 58999999999999996665443
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.67 E-value=3.1e-16 Score=119.05 Aligned_cols=103 Identities=23% Similarity=0.287 Sum_probs=87.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..+++.+. +|+++|+++ +++.++++....++. ++.+...|+.... +.++||+|++
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~-----~~~~fD~I~~ 101 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLT-----FDGEYDFILS 101 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCC-----CCCCEEEEEE
T ss_pred CCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhcccc-chhhhheeccccc-----ccccccEEEE
Confidence 4556999999999999999999876 999999999 999999999888875 4788888876654 4578999999
Q ss_pred cccccCC--cchHHHHHHHHHHhcCCCceEEEE
Q 046623 131 SDVFYDP--EEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 131 ~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
..++++. ....++++.+.++|+|||.+++..
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp ESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999875 456789999999999999555543
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.65 E-value=1.4e-15 Score=120.17 Aligned_cols=127 Identities=16% Similarity=0.168 Sum_probs=100.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.+++.+++.++++|+++|+|+ +++.+++|++.|++.++++++.+|..+.. ..+.||.|++
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-----~~~~~D~Ii~ 180 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-----GENIADRILM 180 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-----CCSCEEEEEE
T ss_pred CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-----cCCCCCEEEE
Confidence 46889999999999999999988877999999999 99999999999999999999999876553 4578999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc---CChHHHHHHHHHhCCcEEEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR---TRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~---~~~~~~~~~~~~~~gf~~~~~ 187 (218)
++|.+. ..+++.+.+++++||.+.++...... ....+.+..+....|+.+...
T Consensus 181 ~~p~~~----~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~ 236 (260)
T d2frna1 181 GYVVRT----HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 236 (260)
T ss_dssp CCCSSG----GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred CCCCch----HHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEEE
Confidence 877543 56788888999999944444333222 223455656557889988655
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.64 E-value=3.8e-16 Score=122.96 Aligned_cols=102 Identities=20% Similarity=0.101 Sum_probs=86.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..+++.+..+|+|+|+|+ +++.|+++....+...++.+..+|....... ..++||+|++
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~---~~~~fD~V~~ 99 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD---LGKEFDVISS 99 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC---CSSCEEEEEE
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc---ccccceEEEE
Confidence 46789999999999999999888877999999999 9999999988877766789999887655431 4568999999
Q ss_pred cccccCC----cchHHHHHHHHHHhcCCCc
Q 046623 131 SDVFYDP----EEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 131 ~~~~~~~----~~~~~~l~~~~~lL~~gG~ 156 (218)
...+++. .+...++..+.++|+|||.
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~ 129 (252)
T d1ri5a_ 100 QFSFHYAFSTSESLDIAQRNIARHLRPGGY 129 (252)
T ss_dssp ESCGGGGGSSHHHHHHHHHHHHHTEEEEEE
T ss_pred cceeeecCCCHHHHHHHHHHHhceeCCCCE
Confidence 8888764 3466899999999999993
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.64 E-value=8.7e-15 Score=111.95 Aligned_cols=155 Identities=12% Similarity=0.105 Sum_probs=103.8
Q ss_pred cccccccccchhHH-HHHHHHhc---CCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCC
Q 046623 27 GRPLTGAWLWDSAL-ILAQFIST---HFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGL 100 (218)
Q Consensus 27 ~~~~~g~~~w~~~~-~l~~~l~~---~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~ 100 (218)
..-..++..|+--. .++..+.. .+..|+.+|||+|||+|..+..++.. +..+|+++|+++ +++.++++.+..
T Consensus 26 e~~~~~~r~w~p~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~-- 103 (209)
T d1nt2a_ 26 EKVFDGYREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-- 103 (209)
T ss_dssp CCEETTEEECCGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--
T ss_pred ceeccceeeeCCcchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc--
Confidence 34456788898443 55555554 34468899999999999999999864 556899999999 999999988775
Q ss_pred CCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeec---cCChHHHHHHHH
Q 046623 101 GGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV---RTRTGDCLHELI 177 (218)
Q Consensus 101 ~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~---~~~~~~~~~~~~ 177 (218)
.++.++..|........ .....+|+|+. .+.+..+...++.++.+.|||||.+++...... .......++...
T Consensus 104 -~ni~~i~~d~~~~~~~~-~~~~~vd~v~~--~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~ 179 (209)
T d1nt2a_ 104 -NNIIPLLFDASKPWKYS-GIVEKVDLIYQ--DIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVL 179 (209)
T ss_dssp -SSEEEECSCTTCGGGTT-TTCCCEEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHH
T ss_pred -CCceEEEeeccCccccc-cccceEEEEEe--cccChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHH
Confidence 35888888776543311 12234555544 344557788899999999999995554432211 111222222221
Q ss_pred --HhCCcEEEEE
Q 046623 178 --MSQGFRVIEL 187 (218)
Q Consensus 178 --~~~gf~~~~~ 187 (218)
.+.||.+.+.
T Consensus 180 ~~l~~gf~i~E~ 191 (209)
T d1nt2a_ 180 KEMEGDFKIVKH 191 (209)
T ss_dssp HHHHTTSEEEEE
T ss_pred HHHHcCCEEEEE
Confidence 2579998775
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=4.6e-16 Score=121.20 Aligned_cols=95 Identities=24% Similarity=0.197 Sum_probs=78.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..+++.+. +|+|+|+|+ +++.|+++. . ..++.+|..+... +.++||+|++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~----~---~~~~~~~~~~l~~----~~~~fD~ii~ 108 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKG----V---KNVVEAKAEDLPF----PSGAFEAVLA 108 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHT----C---SCEEECCTTSCCS----CTTCEEEEEE
T ss_pred CCCCEEEEECCCCchhcccccccce-EEEEeeccccccccccccc----c---ccccccccccccc----ccccccceee
Confidence 3567999999999999999998876 899999999 999988752 1 2356677666543 5689999997
Q ss_pred -cccccCCcchHHHHHHHHHHhcCCCceE
Q 046623 131 -SDVFYDPEEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 131 -~~~~~~~~~~~~~l~~~~~lL~~gG~~~ 158 (218)
..++++.++..++++.+.++|||||.++
T Consensus 109 ~~~~~~~~~d~~~~l~~i~r~Lk~gG~~i 137 (246)
T d2avna1 109 LGDVLSYVENKDKAFSEIRRVLVPDGLLI 137 (246)
T ss_dssp CSSHHHHCSCHHHHHHHHHHHEEEEEEEE
T ss_pred ecchhhhhhhHHHHHHHHHhhcCcCcEEE
Confidence 4688888999999999999999999333
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.63 E-value=3.7e-15 Score=115.65 Aligned_cols=162 Identities=15% Similarity=0.079 Sum_probs=111.1
Q ss_pred cCcCCCCccc-cccccccchhHH-HHHHHHhc----CCCCCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHH
Q 046623 19 DNVCDSVTGR-PLTGAWLWDSAL-ILAQFIST----HFDFQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPG 90 (218)
Q Consensus 19 ~~~~~~~~~~-~~~g~~~w~~~~-~l~~~l~~----~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~ 90 (218)
..||+...-. ....|+.|+--. .|+..+.. .+..++.+|||+|||+|..+..++..+ ...|+++|+++ +++.
T Consensus 34 ~~~y~e~~~~~~~~e~r~w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~ 113 (230)
T d1g8sa_ 34 KKVYDEKIIKIGDEEYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRE 113 (230)
T ss_dssp CCSSSCCEEEETTEEEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHH
T ss_pred CCccCceeeecCCceeeeECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHH
Confidence 3455543321 224577888554 56666544 344678999999999999999998764 46899999999 9999
Q ss_pred HHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccC---
Q 046623 91 LINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRT--- 167 (218)
Q Consensus 91 a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~--- 167 (218)
++.+.... +++..+..|....... ....+|++++...+++..+...++.++.+.|||||.+++........
T Consensus 114 a~~~a~~~---~ni~~i~~d~~~~~~~---~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~ 187 (230)
T d1g8sa_ 114 LLDACAER---ENIIPILGDANKPQEY---ANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTK 187 (230)
T ss_dssp HHHHTTTC---TTEEEEECCTTCGGGG---TTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSS
T ss_pred HHHHHhhh---cccceEEEeeccCccc---ccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCC
Confidence 98876554 4467777776554321 34567777766677777889999999999999999554443222111
Q ss_pred ----ChHHHHHHHHHhCCcEEEEE
Q 046623 168 ----RTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 168 ----~~~~~~~~~~~~~gf~~~~~ 187 (218)
...+..+.+ ++.||.+.+.
T Consensus 188 ~~~~~~~e~~~~L-~~aGF~ive~ 210 (230)
T d1g8sa_ 188 DPKEIFKEQKEIL-EAGGFKIVDE 210 (230)
T ss_dssp CHHHHHHHHHHHH-HHHTEEEEEE
T ss_pred CHHHHHHHHHHHH-HHcCCEEEEE
Confidence 123333344 8899998776
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.61 E-value=8.7e-15 Score=115.39 Aligned_cols=149 Identities=21% Similarity=0.170 Sum_probs=110.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
....+|||||||+|..+..+++. +..+++++|+++.++.++++++..+..+++.+..+|..+.. ..++|+|++
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~------p~~~D~v~~ 153 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPL------PVTADVVLL 153 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC------SCCEEEEEE
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccc------cccchhhhc
Confidence 34568999999999999999765 44689999985588999999999888888999998876532 246999999
Q ss_pred cccccCCcc--hHHHHHHHHHHhcCCCceEEEEEee---c--------------------cCChHHHHHHHHHhCCcEEE
Q 046623 131 SDVFYDPEE--MVGLGKTLKRVCGTGRHTVVWAVSE---V--------------------RTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 131 ~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~~~~~---~--------------------~~~~~~~~~~~~~~~gf~~~ 185 (218)
..++|+.++ ..++++++.+.|+|||+++|+-... . +....+.+..++++.||.+.
T Consensus 154 ~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~ 233 (256)
T d1qzza2 154 SFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALA 233 (256)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEE
T ss_pred cccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCcee
Confidence 999998654 4678999999999999666552110 0 11133556667799999998
Q ss_pred EEEccCCCCCCCceeEEEecC
Q 046623 186 ELTCQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~ 206 (218)
++........+-.+.+.++.+
T Consensus 234 ~~~~~~~~~~~~~~~v~E~~~ 254 (256)
T d1qzza2 234 SERTSGSTTLPFDFSILEFTA 254 (256)
T ss_dssp EEEEECCSSCSSCEEEEEEEE
T ss_pred EEEEeCCcCccCceEEEEEEe
Confidence 885444444455566666543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.61 E-value=2.6e-15 Score=114.48 Aligned_cols=118 Identities=16% Similarity=0.109 Sum_probs=91.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
++.+|||+|||+|.++..++ +++++|+|+ +++.++++ .+.+..+|..+... +.++||+|++.
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~----~~~~fD~I~~~ 98 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPL----KDESFDFALMV 98 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCS----CTTCEEEEEEE
T ss_pred CCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc--------cccccccccccccc----ccccccccccc
Confidence 45689999999998876662 568999999 99888764 27889888876654 56899999999
Q ss_pred ccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc--------------------CChHHHHHHHHHhCCcEEEEE
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR--------------------TRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~--------------------~~~~~~~~~~~~~~gf~~~~~ 187 (218)
.++++..++.++++.+.++|+|||.+++....... ....+.+..++.+.||...++
T Consensus 99 ~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v 174 (208)
T d1vlma_ 99 TTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV 174 (208)
T ss_dssp SCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred cccccccccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEE
Confidence 99999999999999999999999954444332210 113455666669999987765
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.60 E-value=2e-15 Score=120.66 Aligned_cols=102 Identities=14% Similarity=0.116 Sum_probs=86.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|.++..++.. + ..+|+++|+++ +++.|+++....+. ++++...|+.+.. ..++||+|
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~-----~~~~fD~v 98 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIE-----LNDKYDIA 98 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCC-----CSSCEEEE
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--ccccccccccccc-----ccCCceEE
Confidence 56789999999999999998764 2 24899999999 99999999988764 4889988877654 34679999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+++.++++..++..+++.+.++|||||.++++
T Consensus 99 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~ 130 (281)
T d2gh1a1 99 ICHAFLLHMTTPETMLQKMIHSVKKGGKIICF 130 (281)
T ss_dssp EEESCGGGCSSHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEehhhhcCCCHHHHHHHHHHHcCcCcEEEEE
Confidence 99999999999999999999999999944443
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=3.8e-15 Score=117.91 Aligned_cols=124 Identities=16% Similarity=0.154 Sum_probs=97.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
..++.+|||+|||+|.++..+++. + ..+|+++|.++ +++.|++|++..++.+++.+...|..... ....+|.
T Consensus 101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~~D~ 175 (266)
T d1o54a_ 101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF-----DEKDVDA 175 (266)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC-----SCCSEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccc-----cccceee
Confidence 368899999999999999999865 2 35999999999 99999999999988777888776653321 4567888
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
|+. +.+++..+++.+.++|||||.+++++. .-.+..+..+.+ ++.||...++
T Consensus 176 V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~P--~~~Qv~~~~~~l-~~~gF~~i~~ 227 (266)
T d1o54a_ 176 LFL-----DVPDPWNYIDKCWEALKGGGRFATVCP--TTNQVQETLKKL-QELPFIRIEV 227 (266)
T ss_dssp EEE-----CCSCGGGTHHHHHHHEEEEEEEEEEES--SHHHHHHHHHHH-HHSSEEEEEE
T ss_pred eEe-----cCCCHHHHHHHHHhhcCCCCEEEEEeC--cccHHHHHHHHH-HHCCceeEEE
Confidence 876 346778999999999999995555543 234566666776 8899987665
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.60 E-value=5.3e-16 Score=113.10 Aligned_cols=107 Identities=20% Similarity=0.209 Sum_probs=86.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..++++|||+|||+|.+++.++..|+.+|+++|.++ +++.+++|++.++..++++++.+|+..... ....+||+|+
T Consensus 12 ~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~---~~~~~fDiIf 88 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID---CLTGRFDLVF 88 (152)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH---HBCSCEEEEE
T ss_pred hCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccc---ccccccceeE
Confidence 367899999999999999999888999999999999 999999999999998889999888754321 1567899999
Q ss_pred EcccccCCcchHHHHHHHHH--HhcCCCceEEEEEe
Q 046623 130 MSDVFYDPEEMVGLGKTLKR--VCGTGRHTVVWAVS 163 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~--lL~~gG~~~i~~~~ 163 (218)
++||+. .......++.+.. +|+++| ++++..
T Consensus 89 ~DPPy~-~~~~~~~l~~i~~~~~L~~~g--~iiiE~ 121 (152)
T d2esra1 89 LDPPYA-KETIVATIEALAAKNLLSEQV--MVVCET 121 (152)
T ss_dssp ECCSSH-HHHHHHHHHHHHHTTCEEEEE--EEEEEE
T ss_pred echhhc-cchHHHHHHHHHHCCCcCCCe--EEEEEe
Confidence 976654 3556677777654 689988 444443
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.60 E-value=7.6e-15 Score=113.36 Aligned_cols=102 Identities=18% Similarity=0.130 Sum_probs=84.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh---CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL---GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~---~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.++.+|||+|||+|..+..+++. +..+|+|+|+|+ +++.|+++++..+...++++...|..+. +.+.+|+
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~------~~~~~d~ 111 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV------EIKNASM 111 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC------CCCSEEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc------cccccee
Confidence 46779999999999999998764 345999999999 9999999998887766677777665543 4467899
Q ss_pred EEEcccccCC--cchHHHHHHHHHHhcCCCceEE
Q 046623 128 VIMSDVFYDP--EEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 128 Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i 159 (218)
|+++..+++. ++..++++++.+.|+|||.+++
T Consensus 112 i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~ 145 (225)
T d1im8a_ 112 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVL 145 (225)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred eEEeeeccccChhhHHHHHHHHHHhCCCCceeec
Confidence 9998888775 5788999999999999994433
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.60 E-value=8.8e-16 Score=120.22 Aligned_cols=109 Identities=13% Similarity=0.105 Sum_probs=86.1
Q ss_pred HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc
Q 046623 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL 119 (218)
Q Consensus 41 ~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (218)
++.+.+... ..++++|||+|||+|..+..+++.+. +++|+|.|+ +++.|++++...+.. ++++.+|+.+..
T Consensus 26 ~~~~~~~~~-~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~~--v~~~~~d~~~~~---- 97 (246)
T d1y8ca_ 26 FIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLK--PRLACQDISNLN---- 97 (246)
T ss_dssp HHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCC--CEEECCCGGGCC----
T ss_pred HHHHHHHHh-CCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCcc--ceeeccchhhhc----
Confidence 344444432 34567999999999999999999876 999999999 999999998887754 899988886654
Q ss_pred ccCCCCcEEEEc-ccccC---CcchHHHHHHHHHHhcCCCceE
Q 046623 120 SELGEFDMVIMS-DVFYD---PEEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 120 ~~~~~~D~Iv~~-~~~~~---~~~~~~~l~~~~~lL~~gG~~~ 158 (218)
..++||+|++. .++++ .+++..+++.+.++|+|||.++
T Consensus 98 -~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i 139 (246)
T d1y8ca_ 98 -INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI 139 (246)
T ss_dssp -CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred -ccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 34689999974 45544 3567889999999999999544
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.60 E-value=2.9e-15 Score=112.71 Aligned_cols=141 Identities=12% Similarity=0.044 Sum_probs=100.3
Q ss_pred HHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCC-----------CCceEEEEe
Q 046623 42 LAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGL-----------GGRVEVREL 109 (218)
Q Consensus 42 l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~-----------~~~~~~~~~ 109 (218)
+.++.......++.+|||+|||+|..+..+++.|. +|+++|+|+ +++.++++.+..+. .....+..+
T Consensus 9 ~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T d1pjza_ 9 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 87 (201)
T ss_dssp HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecc
Confidence 45555554456888999999999999999999987 999999999 99999988754321 123567777
Q ss_pred ecCCCCccccccCCCCcEEEEcccccCCc--chHHHHHHHHHHhcCCCceEEEEEeecc--------CChHHHHHHHHHh
Q 046623 110 VWGSDDLSQLSELGEFDMVIMSDVFYDPE--EMVGLGKTLKRVCGTGRHTVVWAVSEVR--------TRTGDCLHELIMS 179 (218)
Q Consensus 110 d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~--~~~~~l~~~~~lL~~gG~~~i~~~~~~~--------~~~~~~~~~~~~~ 179 (218)
|+...... ....||+|++...+++.. ....+++.+.++|||||.+++....... ....+.+..+ -.
T Consensus 88 d~~~l~~~---~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~l-~~ 163 (201)
T d1pjza_ 88 DFFALTAR---DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRV-MS 163 (201)
T ss_dssp CCSSSTHH---HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHT-SC
T ss_pred cccccccc---cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHHH-hC
Confidence 76655431 346799999988887753 4688999999999999955544332211 1133445555 35
Q ss_pred CCcEEEEE
Q 046623 180 QGFRVIEL 187 (218)
Q Consensus 180 ~gf~~~~~ 187 (218)
.+|.+..+
T Consensus 164 ~~~~i~~~ 171 (201)
T d1pjza_ 164 GNWEVTKV 171 (201)
T ss_dssp SSEEEEEE
T ss_pred CCcEEEEE
Confidence 67777655
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.60 E-value=8.2e-16 Score=125.31 Aligned_cols=104 Identities=17% Similarity=0.133 Sum_probs=86.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.+++.+++.|+.+|+++|+++ +++.+++|++.|++.++++++.+|..+..........+||+|++
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~ 223 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 223 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence 46889999999999999999988888999999999 99999999999999878899988875432211224578999999
Q ss_pred cccccCCc---------chHHHHHHHHHHhcCCC
Q 046623 131 SDVFYDPE---------EMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 131 ~~~~~~~~---------~~~~~l~~~~~lL~~gG 155 (218)
++|..... .+..++..+.++|+|||
T Consensus 224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG 257 (324)
T d2as0a2 224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGG 257 (324)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88865431 35668888899999999
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=5e-15 Score=120.25 Aligned_cols=102 Identities=21% Similarity=0.247 Sum_probs=86.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
.++++|||+|||+|.+++.+++.|+.+|+++|.++....++++++.++..+++.++.+|..+... +.+++|+|++.
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~----~~~~~D~ivs~ 107 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVEL----PVEKVDIIISE 107 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCC----SSSCEEEEEEC
T ss_pred CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHccc----ccceeEEEeee
Confidence 57899999999999999999999988999999998557778888999998889999999887665 66889999985
Q ss_pred cccc---CCcchHHHHHHHHHHhcCCCce
Q 046623 132 DVFY---DPEEMVGLGKTLKRVCGTGRHT 157 (218)
Q Consensus 132 ~~~~---~~~~~~~~l~~~~~lL~~gG~~ 157 (218)
...+ +....+.++..+.++|+|||.+
T Consensus 108 ~~~~~l~~e~~~~~~l~~~~r~Lkp~G~i 136 (316)
T d1oria_ 108 WMGYCLFYESMLNTVLHARDKWLAPDGLI 136 (316)
T ss_dssp CCBBTBTBTCCHHHHHHHHHHHEEEEEEE
T ss_pred eeeeeeccHHHHHHHHHHHHhcCCCCeEE
Confidence 4433 3467899999999999999933
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.58 E-value=3.2e-15 Score=112.00 Aligned_cols=129 Identities=16% Similarity=0.154 Sum_probs=100.1
Q ss_pred ccccchhHHHHHHHHhc--CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEE
Q 046623 32 GAWLWDSALILAQFIST--HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRE 108 (218)
Q Consensus 32 g~~~w~~~~~l~~~l~~--~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~ 108 (218)
+..+.+++..+.+.+.+ .+..++.+|||++||+|.+++.++..|+.+|+++|.++ +++.+++|++..+..+++++..
T Consensus 18 ~~~~RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~ 97 (182)
T d2fhpa1 18 GDNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRK 97 (182)
T ss_dssp CCSSCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE
T ss_pred CCCcCcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Confidence 34456777777777666 34467899999999999999999999999999999999 9999999999998877899998
Q ss_pred eecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHH--HhcCCCceEEEEEe
Q 046623 109 LVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKR--VCGTGRHTVVWAVS 163 (218)
Q Consensus 109 ~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~--lL~~gG~~~i~~~~ 163 (218)
.|.............+||+|+++||+ .......+++.+.+ +|+++| ++++..
T Consensus 98 ~D~~~~l~~~~~~~~~fDlIflDPPY-~~~~~~~~l~~i~~~~~L~~~g--iIi~E~ 151 (182)
T d2fhpa1 98 MDANRALEQFYEEKLQFDLVLLDPPY-AKQEIVSQLEKMLERQLLTNEA--VIVCET 151 (182)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCCG-GGCCHHHHHHHHHHTTCEEEEE--EEEEEE
T ss_pred ccchhhhhhhcccCCCcceEEechhh-hhhHHHHHHHHHHHCCCCCCCE--EEEEEc
Confidence 88754322111234689999997775 44667788888765 689998 455443
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.58 E-value=9.2e-15 Score=115.22 Aligned_cols=125 Identities=19% Similarity=0.171 Sum_probs=96.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHh--CCCCceEEEEeecCCCCccccccCCCC
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEAN--GLGGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
..++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.|++|++.. ....++.+...|..+... +.+.|
T Consensus 94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~----~~~~f 169 (264)
T d1i9ga_ 94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL----PDGSV 169 (264)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC----CTTCE
T ss_pred CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccc----cCCCc
Confidence 368899999999999999999865 4 35999999999 999999999864 334668899888765544 67889
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEE
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIE 186 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~ 186 (218)
|.|+++ .+++...++.+.++|||||.+++++ +.-.+.......+..+.+|...+
T Consensus 170 DaV~ld-----lp~P~~~l~~~~~~LkpGG~lv~~~--P~i~Qv~~~~~~l~~~~~f~~i~ 223 (264)
T d1i9ga_ 170 DRAVLD-----MLAPWEVLDAVSRLLVAGGVLMVYV--ATVTQLSRIVEALRAKQCWTEPR 223 (264)
T ss_dssp EEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEE--SSHHHHHHHHHHHHHHSSBCCCE
T ss_pred ceEEEe-----cCCHHHHHHHHHhccCCCCEEEEEe--CccChHHHHHHHHHHcCCeecce
Confidence 999872 4677899999999999999544443 43355667777763456776434
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.58 E-value=5.8e-15 Score=120.42 Aligned_cols=100 Identities=22% Similarity=0.271 Sum_probs=87.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
.++++|||+|||+|.+++.+++.|+.+|+++|.+++++.++++.+.++...++.++.+|..+... +.++||+|++.
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~----~~~~~D~i~se 112 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHL----PFPKVDIIISE 112 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCC----SSSCEEEEEEC
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccC----cccceeEEEEE
Confidence 57889999999999999999999998999999988668899999999998889999998877654 66899999985
Q ss_pred ccc---cCCcchHHHHHHHHHHhcCCC
Q 046623 132 DVF---YDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 132 ~~~---~~~~~~~~~l~~~~~lL~~gG 155 (218)
... .+......++....++|||||
T Consensus 113 ~~~~~~~~e~~~~~~~~a~~r~LkpgG 139 (328)
T d1g6q1_ 113 WMGYFLLYESMMDTVLYARDHYLVEGG 139 (328)
T ss_dssp CCBTTBSTTCCHHHHHHHHHHHEEEEE
T ss_pred ecceeeccchhHHHHHHHHHhccCCCe
Confidence 444 345678889999999999999
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.58 E-value=2.8e-14 Score=108.46 Aligned_cols=127 Identities=23% Similarity=0.233 Sum_probs=89.2
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
..+.+|++|||+|||+|.+++.++..|+.+|+++|+++ +++.+++|++.++.. .++...|... ...+||+
T Consensus 42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~--~~~~~~d~~~-------~~~~fD~ 112 (201)
T d1wy7a1 42 LGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK--FKVFIGDVSE-------FNSRVDI 112 (201)
T ss_dssp TTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS--EEEEESCGGG-------CCCCCSE
T ss_pred cCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCC--ceEEECchhh-------hCCcCcE
Confidence 55678999999999999999999888888999999999 999999999888754 7787766533 3467999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
|++++|+...... .-...+.+.+.+++ .++............+..+..+.|+.+...
T Consensus 113 Vi~nPP~~~~~~~-~d~~~l~~~~~~~~--~v~~ih~~~~~~~~~i~~~~~~~g~~i~~~ 169 (201)
T d1wy7a1 113 VIMNPPFGSQRKH-ADRPFLLKAFEISD--VVYSIHLAKPEVRRFIEKFSWEHGFVVTHR 169 (201)
T ss_dssp EEECCCCSSSSTT-TTHHHHHHHHHHCS--EEEEEEECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEcCcccccccc-ccHHHHHHHHhhcc--cchhcccchHHHHHHHHHHHhhcCceEEEE
Confidence 9999988643221 11222333444444 333332323334455666657888877554
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=7.5e-14 Score=109.47 Aligned_cols=148 Identities=15% Similarity=0.080 Sum_probs=99.2
Q ss_pred CCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc--ccCCCCcEE
Q 046623 53 QNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL--SELGEFDMV 128 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~D~I 128 (218)
+..++||+|||+|..++.++ +.+..+++++|+++ +++.|++|++.+++.+++.+...++........ ...++||+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 45689999999999999886 44456999999999 999999999999999999998877655432211 134689999
Q ss_pred EEcccccCCcc-----------------------------------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHH
Q 046623 129 IMSDVFYDPEE-----------------------------------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCL 173 (218)
Q Consensus 129 v~~~~~~~~~~-----------------------------------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~ 173 (218)
++|+|++...+ ...+++...+.++..|.+...+. ......+..
T Consensus 141 vsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig--~~~~l~~i~ 218 (250)
T d2h00a1 141 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLG--KKCSLAPLK 218 (250)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEES--STTSHHHHH
T ss_pred EecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEec--chhhHHHHH
Confidence 99999985210 33355566677888883323322 234455555
Q ss_pred HHHHHhCCcEEEEEEccCCCCCC-CceeEEEe
Q 046623 174 HELIMSQGFRVIELTCQLGGGCP-EAFAVYEL 204 (218)
Q Consensus 174 ~~~~~~~gf~~~~~~~~~~~~~~-~~~~l~~~ 204 (218)
..+ .+.|+.-.++-...+ |+. .+.+.|.|
T Consensus 219 ~~L-~~~g~~~i~~ie~~q-G~~~r~iiaWsf 248 (250)
T d2h00a1 219 EEL-RIQGVPKVTYTEFCQ-GRTMRWALAWSF 248 (250)
T ss_dssp HHH-HHTTCSEEEEEEEEE-TTEEEEEEEEES
T ss_pred HHH-HHcCCCeEEEEEecC-CCEeEEEEEEEe
Confidence 555 888986544422222 443 33444665
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.7e-14 Score=116.78 Aligned_cols=104 Identities=20% Similarity=0.259 Sum_probs=84.5
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 50 FDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 50 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
...++++|||||||+|.+++.+++.|+.+|+++|.++.+..++++...++...++.++.+|..+... +..+||+|+
T Consensus 32 ~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~----~~~~~D~Iv 107 (311)
T d2fyta1 32 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHL----PVEKVDVII 107 (311)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCC----SCSCEEEEE
T ss_pred ccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcC----ccccceEEE
Confidence 3468899999999999999999999988999999999334577777888888889999998877654 567999999
Q ss_pred EcccccC---CcchHHHHHHHHHHhcCCCce
Q 046623 130 MSDVFYD---PEEMVGLGKTLKRVCGTGRHT 157 (218)
Q Consensus 130 ~~~~~~~---~~~~~~~l~~~~~lL~~gG~~ 157 (218)
+....+. ......++....++|+|||.+
T Consensus 108 se~~~~~~~~e~~~~~~~~a~~~~Lkp~G~i 138 (311)
T d2fyta1 108 SEWMGYFLLFESMLDSVLYAKNKYLAKGGSV 138 (311)
T ss_dssp ECCCBTTBTTTCHHHHHHHHHHHHEEEEEEE
T ss_pred EeeeeeecccccccHHHHHHHHhcCCCCcEE
Confidence 8544432 345678888888999999933
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=7.4e-15 Score=115.28 Aligned_cols=137 Identities=14% Similarity=0.076 Sum_probs=94.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCc---------------------------
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGR--------------------------- 103 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~--------------------------- 103 (218)
.++.+|||+|||+|..++.++..+..+|+++|+|+ +++.++++++.......
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 129 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence 56789999999999988887766666899999999 99999999876543210
Q ss_pred --eEEEEeecCCCCccccccCCCCcEEEEcccccCC----cchHHHHHHHHHHhcCCCceEEEEEee------------c
Q 046623 104 --VEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP----EEMVGLGKTLKRVCGTGRHTVVWAVSE------------V 165 (218)
Q Consensus 104 --~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~----~~~~~~l~~~~~lL~~gG~~~i~~~~~------------~ 165 (218)
......+..........+.++||+|++..++++. +++..+++.+.++|||||.+++..... .
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~ 209 (257)
T d2a14a1 130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC 209 (257)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccc
Confidence 0111112111111112256789999999888764 467789999999999999444332111 0
Q ss_pred cCChHHHHHHHHHhCCcEEEEEE
Q 046623 166 RTRTGDCLHELIMSQGFRVIELT 188 (218)
Q Consensus 166 ~~~~~~~~~~~~~~~gf~~~~~~ 188 (218)
.....+.+..++++.||.+.++.
T Consensus 210 ~~~~~~~~~~~l~~aGf~v~~~~ 232 (257)
T d2a14a1 210 VALEKGEVEQAVLDAGFDIEQLL 232 (257)
T ss_dssp CCCCHHHHHHHHHHTTEEEEEEE
T ss_pred cCCCHHHHHHHHHHCCCEEEEEE
Confidence 11245566666699999988873
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=3.2e-14 Score=112.50 Aligned_cols=156 Identities=18% Similarity=0.253 Sum_probs=107.4
Q ss_pred EEcCeEEEEEeccCcCCCCccccccccccchhHHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCc
Q 046623 7 EIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVK 85 (218)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~ 85 (218)
++.|.++.+. ++|+-|.++ +..|.+++.. ....+..+++|+|||+|..++.+++.+..+|+++|+|
T Consensus 76 ~F~~~~f~v~--~~vlIPRpe-----------TE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis 142 (271)
T d1nv8a_ 76 EFMGLSFLVE--EGVFVPRPE-----------TEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVS 142 (271)
T ss_dssp EETTEEEECC--TTSCCCCTT-----------HHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESC
T ss_pred EEeeeEEEEe--cCccCchhh-----------hhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhh
Confidence 4555555544 478888863 3345454443 1112345899999999999999988877899999999
Q ss_pred c-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCc-------------------c-hHHHH
Q 046623 86 P-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPE-------------------E-MVGLG 144 (218)
Q Consensus 86 ~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~-------------------~-~~~~l 144 (218)
+ +++.|++|++.+++.+++.+...|+.+.... ..++||+|++|+|+-... + +.-+-
T Consensus 143 ~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~---~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r 219 (271)
T d1nv8a_ 143 SKAVEIARKNAERHGVSDRFFVRKGEFLEPFKE---KFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYR 219 (271)
T ss_dssp HHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGG---GTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHH
T ss_pred hhHHHHHHHHHHHcCCCceeEEeeccccccccc---ccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHH
Confidence 9 9999999999999988888888888764321 347899999999874321 0 12222
Q ss_pred HHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCc
Q 046623 145 KTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGF 182 (218)
Q Consensus 145 ~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf 182 (218)
+-+.++|+||| .+++... ....+.+..++.+.||
T Consensus 220 ~i~~~~L~~~G--~l~~Eig--~~Q~~~v~~l~~~~g~ 253 (271)
T d1nv8a_ 220 EFFGRYDTSGK--IVLMEIG--EDQVEELKKIVSDTVF 253 (271)
T ss_dssp HHHHHCCCTTC--EEEEECC--TTCHHHHTTTSTTCEE
T ss_pred HHHHHhcCCCC--EEEEEEC--HHHHHHHHHHHHhCCE
Confidence 33567899999 4444333 3344555566566666
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.54 E-value=6.2e-14 Score=106.67 Aligned_cols=128 Identities=16% Similarity=0.123 Sum_probs=95.0
Q ss_pred CCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 54 NKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
.-.|||||||+|..+..+|+. +...++|+|+++ ++..+.++++..++. ++.++.+|..... ...+.+++|.|++.
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~--~~~~~~~~d~v~i~ 106 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLT--DVFEPGEVKRVYLN 106 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHH--HHCCTTSCCEEEEE
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc-Cchhcccchhhhh--cccCchhhhccccc
Confidence 347999999999999998865 446899999999 999999999999886 5999998875432 22367889999887
Q ss_pred ccccCCcch--------HHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 132 DVFYDPEEM--------VGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 132 ~~~~~~~~~--------~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
.|..+.... ..+++.+.++||||| .+++.+....+.+.....+ .+.++.....
T Consensus 107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG--~l~i~TD~~~y~~~~~~~~-~~~~~~~~~~ 167 (204)
T d2fcaa1 107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGG--SIHFKTDNRGLFEYSLKSF-SEYGLLLTYV 167 (204)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSC--EEEEEESCHHHHHHHHHHH-HHHTCEEEEE
T ss_pred cccccchhhhcchhhhHHHHHHHHHHhCCCCc--EEEEEECChHHHHHHHHHH-HHCCCccccC
Confidence 665443332 589999999999999 4455555444454444554 6667665554
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.54 E-value=8.3e-15 Score=118.73 Aligned_cols=135 Identities=13% Similarity=0.057 Sum_probs=96.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC-CceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG-GRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++++|||++||+|.+++.++..|+.+|+++|+++ +++.+++|++.|++. .+++++..|..+..........+||+|+
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 46889999999999999999888888999999999 999999999999985 5689999887544321122446899999
Q ss_pred EcccccCC---------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHH---HHHHHHhCCcEEEEE
Q 046623 130 MSDVFYDP---------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDC---LHELIMSQGFRVIEL 187 (218)
Q Consensus 130 ~~~~~~~~---------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~---~~~~~~~~gf~~~~~ 187 (218)
+++|.+.. .++.+++..+.++|+||| ++++++....-...++ +...+...+..+..+
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG-~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~~~ 291 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENG-LIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDL 291 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEE-EEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCC-EEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 98885432 236678999999999999 3333333222222222 233334555555544
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.9e-14 Score=110.46 Aligned_cols=145 Identities=12% Similarity=0.045 Sum_probs=103.0
Q ss_pred hHHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhC----------------
Q 046623 38 SALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANG---------------- 99 (218)
Q Consensus 38 ~~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~---------------- 99 (218)
....|.+++.+ ....++.+|||+|||+|..+..+++.|. +|+++|+|+ +++.+++......
T Consensus 29 ~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~ 107 (229)
T d2bzga1 29 GHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKS 107 (229)
T ss_dssp CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeee
Confidence 34556666655 2235778999999999999999999987 999999999 9998887754321
Q ss_pred CCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC--cchHHHHHHHHHHhcCCCceEEEEEeecc--------CCh
Q 046623 100 LGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP--EEMVGLGKTLKRVCGTGRHTVVWAVSEVR--------TRT 169 (218)
Q Consensus 100 ~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~~~~~~--------~~~ 169 (218)
....+++..+|+..... ...+.||+|+...++++. ++...+++.+.++|+|||.+++....... ...
T Consensus 108 ~~~~v~~~~~d~~~l~~---~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~ 184 (229)
T d2bzga1 108 SSGNISLYCCSIFDLPR---TNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVP 184 (229)
T ss_dssp TTSSEEEEESCGGGGGG---SCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCC
T ss_pred cCCcEEEEEcchhhccc---cccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCC
Confidence 11347788777655432 145789999998888764 67789999999999999955544433211 124
Q ss_pred HHHHHHHHHhCCcEEEEE
Q 046623 170 GDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 170 ~~~~~~~~~~~gf~~~~~ 187 (218)
.+.+..++ ..+|.+..+
T Consensus 185 ~~el~~lf-~~~~~i~~l 201 (229)
T d2bzga1 185 HAEIERLF-GKICNIRCL 201 (229)
T ss_dssp HHHHHHHH-TTTEEEEEE
T ss_pred HHHHHHHh-cCCCEEEEE
Confidence 45566663 457777554
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=6.1e-15 Score=110.62 Aligned_cols=122 Identities=16% Similarity=0.064 Sum_probs=89.1
Q ss_pred ccchhHHHHHHHHhc--CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEee
Q 046623 34 WLWDSALILAQFIST--HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELV 110 (218)
Q Consensus 34 ~~w~~~~~l~~~l~~--~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d 110 (218)
.+.+++..+.+.+.+ .+...+.+|||++||+|.+++.++..|+.+|+++|.++ +++.+++|++..+.. +..++..|
T Consensus 22 ~~RPt~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~-~~~ii~~d 100 (183)
T d2fpoa1 22 GLRPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAG-NARVVNSN 100 (183)
T ss_dssp -----CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSC
T ss_pred CcCcCcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhcccc-ceeeeeec
Confidence 344555555555544 12356789999999999999999999999999999999 999999999987765 47788776
Q ss_pred cCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHH--HhcCCCceEEEEE
Q 046623 111 WGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKR--VCGTGRHTVVWAV 162 (218)
Q Consensus 111 ~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~--lL~~gG~~~i~~~ 162 (218)
...... ....+||+|+++||+ .......++..+.+ +|+++| ++++.
T Consensus 101 ~~~~l~---~~~~~fDlIf~DPPY-~~~~~~~~l~~l~~~~~L~~~~--iIiiE 148 (183)
T d2fpoa1 101 AMSFLA---QKGTPHNIVFVDPPF-RRGLLEETINLLEDNGWLADEA--LIYVE 148 (183)
T ss_dssp HHHHHS---SCCCCEEEEEECCSS-STTTHHHHHHHHHHTTCEEEEE--EEEEE
T ss_pred cccccc---ccccccCEEEEcCcc-ccchHHHHHHHHHHCCCCCCCe--EEEEE
Confidence 543321 145689999997775 44677888888765 689988 44444
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.52 E-value=2.5e-14 Score=114.87 Aligned_cols=133 Identities=15% Similarity=0.080 Sum_probs=96.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCC-ceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGG-RVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||++||+|.+++.++..|+ +|+++|.|+ +++.+++|++.|++.+ +++++..|+.+..........+||+|+
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii 209 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 209 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred cCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence 4678999999999999999998887 899999999 9999999999999865 588998887654322223457899999
Q ss_pred EcccccCC----------cchHHHHHHHHHHhcCCCceEEEEEeeccCC---hHHHHHHHHHhCCcEEE
Q 046623 130 MSDVFYDP----------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTR---TGDCLHELIMSQGFRVI 185 (218)
Q Consensus 130 ~~~~~~~~----------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~---~~~~~~~~~~~~gf~~~ 185 (218)
+++|.+.. .....++..+.++|+|||.+++.++...... ..+.+...+...+-.+.
T Consensus 210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~ag~~v~ 278 (309)
T d2igta1 210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 278 (309)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcce
Confidence 98885421 2245566778889999996565555443322 23334444344554443
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.51 E-value=1.1e-14 Score=118.26 Aligned_cols=103 Identities=22% Similarity=0.145 Sum_probs=81.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++++|||++||+|.+++.++.. +.+|+++|+|+ +++.+++|++.|++. +++++..|..+.........++||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 46889999999999999988764 55999999999 999999999999985 4889888765432211124578999999
Q ss_pred cccccCC---------cchHHHHHHHHHHhcCCCc
Q 046623 131 SDVFYDP---------EEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 131 ~~~~~~~---------~~~~~~l~~~~~lL~~gG~ 156 (218)
++|.... ..+..++..+.++|+|||.
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~ 256 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGI 256 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 8886542 2245688888999999993
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.50 E-value=8e-14 Score=105.17 Aligned_cols=75 Identities=25% Similarity=0.335 Sum_probs=62.9
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
..+..|++|||+|||+|.+++.++..|+.+|+++|+++ +++.+++|. .+++++..|+.+ ..++||+
T Consensus 44 ~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~------~~~~~~~~D~~~-------l~~~fD~ 110 (197)
T d1ne2a_ 44 DGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC------GGVNFMVADVSE-------ISGKYDT 110 (197)
T ss_dssp HTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC------TTSEEEECCGGG-------CCCCEEE
T ss_pred cCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc------ccccEEEEehhh-------cCCcceE
Confidence 45678999999999999999999999888999999999 999999885 347888888643 3468999
Q ss_pred EEEcccccC
Q 046623 128 VIMSDVFYD 136 (218)
Q Consensus 128 Iv~~~~~~~ 136 (218)
|++|+|+..
T Consensus 111 Vi~NPPfg~ 119 (197)
T d1ne2a_ 111 WIMNPPFGS 119 (197)
T ss_dssp EEECCCC--
T ss_pred EEeCcccch
Confidence 999999853
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.49 E-value=1.6e-13 Score=105.17 Aligned_cols=109 Identities=20% Similarity=0.155 Sum_probs=82.4
Q ss_pred HHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc
Q 046623 40 LILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL 116 (218)
Q Consensus 40 ~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 116 (218)
..++.++......++.+|||+|||+|..+..+++. + ..+|+++|+++ +++.++++++..+..+ +.++.+|......
T Consensus 62 ~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n-~~~~~~d~~~~~~ 140 (213)
T d1dl5a1 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVP 140 (213)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCG
T ss_pred hhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccc-cccccCchHHccc
Confidence 34455555444568899999999999999998754 3 35899999999 9999999999888754 7777777554433
Q ss_pred cccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEE
Q 046623 117 SQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 117 ~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i 159 (218)
..++||+|++...+++.. +.+.+.|||||++++
T Consensus 141 ----~~~~fD~I~~~~~~~~~p------~~l~~~LkpGG~lv~ 173 (213)
T d1dl5a1 141 ----EFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIV 173 (213)
T ss_dssp ----GGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEE
T ss_pred ----cccchhhhhhhccHHHhH------HHHHHhcCCCcEEEE
Confidence 557899999987776532 346778999995544
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=1.7e-12 Score=106.61 Aligned_cols=160 Identities=16% Similarity=0.095 Sum_probs=116.9
Q ss_pred hhHHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 37 DSALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 37 ~~~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
.....|.+.+.+ ....++.+|||+.||+|.+++.+++.. .+|+++|.++ +++.|++|++.|++.+ +.++.+|..+.
T Consensus 195 ~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~-~~V~gvE~~~~ai~~A~~na~~n~i~n-~~~~~~~~~~~ 272 (358)
T d1uwva2 195 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENLEED 272 (358)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCTTSC
T ss_pred hhhhHHHHHHHHhhccCCCceEEEecccccccchhccccc-cEEEeccCcHHHHHHHHHhHHhccccc-ceeeecchhhh
Confidence 344555555554 233567899999999999999998875 4999999999 9999999999999874 89999887765
Q ss_pred CccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE-EccCCC
Q 046623 115 DLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL-TCQLGG 193 (218)
Q Consensus 115 ~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~-~~~~~~ 193 (218)
..........+|+|++++|=. . ..+.++.+.+. +|. .+++++... ......+..+ .+.||.+.++ |+.+.|
T Consensus 273 ~~~~~~~~~~~d~vilDPPR~--G-~~~~~~~l~~~-~~~--~ivYVSCnp-~TlaRDl~~l-~~~gy~l~~i~~~D~FP 344 (358)
T d1uwva2 273 VTKQPWAKNGFDKVLLDPARA--G-AAGVMQQIIKL-EPI--RIVYVSCNP-ATLARDSEAL-LKAGYTIARLAMLDMFP 344 (358)
T ss_dssp CSSSGGGTTCCSEEEECCCTT--C-CHHHHHHHHHH-CCS--EEEEEESCH-HHHHHHHHHH-HHTTCEEEEEEEECCST
T ss_pred hhhhhhhhccCceEEeCCCCc--c-HHHHHHHHHHc-CCC--EEEEEeCCH-HHHHHHHHHH-HHCCCeEeEEEEEecCC
Confidence 433333457899999976632 2 34577777654 553 466666442 2333445555 6789999998 899999
Q ss_pred CCCCceeEEEecC
Q 046623 194 GCPEAFAVYELIP 206 (218)
Q Consensus 194 ~~~~~~~l~~~~~ 206 (218)
.......+..|.+
T Consensus 345 ~T~HvE~v~~l~R 357 (358)
T d1uwva2 345 HTGHLESMVLFSR 357 (358)
T ss_dssp TSSCCEEEEEEEC
T ss_pred CCccEEEEEEEEe
Confidence 8888888777654
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=8.7e-15 Score=113.51 Aligned_cols=103 Identities=13% Similarity=0.144 Sum_probs=78.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||||||+|..+..+++.+..+++++|+++ +++.|+++.+..+ ..+.++..++..... ..+.++||.|+.
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~fD~i~f 127 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAP--TLPDGHFDGILY 127 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGG--GSCTTCEEEEEE
T ss_pred cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--ccccccccccccccc--ccccccccceee
Confidence 46789999999999999999887666899999999 9999999987665 336666655433221 115678999985
Q ss_pred c-----ccccCCcchHHHHHHHHHHhcCCCceE
Q 046623 131 S-----DVFYDPEEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 131 ~-----~~~~~~~~~~~~l~~~~~lL~~gG~~~ 158 (218)
. ..+++..+...+++.+.++|||||.++
T Consensus 128 D~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~ 160 (229)
T d1zx0a1 128 DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT 160 (229)
T ss_dssp CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEE
T ss_pred cccccccccccccCHHHHHHHHHHHcCCCcEEE
Confidence 3 334455678889999999999999433
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.47 E-value=1.7e-12 Score=100.15 Aligned_cols=150 Identities=17% Similarity=0.141 Sum_probs=100.8
Q ss_pred cccccchhHH-HHHHHHhc----CCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCC
Q 046623 31 TGAWLWDSAL-ILAQFIST----HFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGG 102 (218)
Q Consensus 31 ~g~~~w~~~~-~l~~~l~~----~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~ 102 (218)
..++.|+--. .|+..+.. .+..+|.+|||+|||+|..+..+++. | ..+|+++|+++ +++.++.+++.. .
T Consensus 46 ~e~R~w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~---~ 122 (227)
T d1g8aa_ 46 EEYRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---R 122 (227)
T ss_dssp EEEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---T
T ss_pred eeEEEECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc---C
Confidence 4677787432 45555544 33468999999999999999999864 4 36999999999 999999887554 3
Q ss_pred ceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc------CChHHHHHHH
Q 046623 103 RVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR------TRTGDCLHEL 176 (218)
Q Consensus 103 ~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~------~~~~~~~~~~ 176 (218)
++..+..|........ .....+|+|++. +.+.++...++.++.+.|||||.+++.+..... .........+
T Consensus 123 ~~~~i~~d~~~~~~~~-~~~~~vD~i~~d--~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l 199 (227)
T d1g8aa_ 123 NIVPILGDATKPEEYR-ALVPKVDVIFED--VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERE 199 (227)
T ss_dssp TEEEEECCTTCGGGGT-TTCCCEEEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHH
T ss_pred CceEEEEECCCccccc-ccccceEEEEEE--ccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHH
Confidence 3666766655433211 134678888773 334577888999999999999954444322211 1122333444
Q ss_pred HHhCCcEEEEE
Q 046623 177 IMSQGFRVIEL 187 (218)
Q Consensus 177 ~~~~gf~~~~~ 187 (218)
.+.+|.+.+.
T Consensus 200 -~~~gf~iie~ 209 (227)
T d1g8aa_ 200 -LSEYFEVIER 209 (227)
T ss_dssp -HHTTSEEEEE
T ss_pred -HHcCCEEEEE
Confidence 5679998775
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.46 E-value=5.8e-14 Score=104.02 Aligned_cols=99 Identities=25% Similarity=0.256 Sum_probs=72.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.+++.++..|+ +++++|.++ +++.+++|++.+++..++.....|. ..........+||+|++
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~--~~~~~~~~~~~fD~If~ 116 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEV--FLPEAKAQGERFTVAFM 116 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHH--HHHHHHHTTCCEEEEEE
T ss_pred cCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhc--ccccccccCCccceeEE
Confidence 4678999999999999999988887 899999999 9999999999999875444333321 11111124578999999
Q ss_pred cccccCCcchHHHHHHHH--HHhcCCC
Q 046623 131 SDVFYDPEEMVGLGKTLK--RVCGTGR 155 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~--~lL~~gG 155 (218)
+||+.. + ..+.+..+. .+|++||
T Consensus 117 DPPY~~-~-~~~~l~~l~~~~ll~~~g 141 (171)
T d1ws6a1 117 APPYAM-D-LAALFGELLASGLVEAGG 141 (171)
T ss_dssp CCCTTS-C-TTHHHHHHHHHTCEEEEE
T ss_pred cccccc-C-HHHHHHHHHHcCCcCCCe
Confidence 877653 3 334444443 4789998
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=4.4e-13 Score=108.56 Aligned_cols=127 Identities=17% Similarity=0.101 Sum_probs=89.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHh----------CCCCceEEEEeecCCCCcc
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEAN----------GLGGRVEVRELVWGSDDLS 117 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~----------~~~~~~~~~~~d~~~~~~~ 117 (218)
..+|.+|||+|||+|.++..+++. + ..+|+++|+++ +++.|++|++.. +...++++...|+.+....
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~ 175 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 175 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence 358899999999999999999864 3 35999999999 999999999864 2345689999887654321
Q ss_pred ccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHh--CCcEEEEE
Q 046623 118 QLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMS--QGFRVIEL 187 (218)
Q Consensus 118 ~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~--~gf~~~~~ 187 (218)
.....||.|++ ++ .++...+..+.+.|||||.+++++. .-.++...++.+ +. .+|..+++
T Consensus 176 --~~~~~fD~V~L-D~----p~P~~~l~~~~~~LKpGG~lv~~~P--~i~Qv~~~~~~l-~~~~~~f~~i~~ 237 (324)
T d2b25a1 176 --IKSLTFDAVAL-DM----LNPHVTLPVFYPHLKHGGVCAVYVV--NITQVIELLDGI-RTCELALSCEKI 237 (324)
T ss_dssp -------EEEEEE-CS----SSTTTTHHHHGGGEEEEEEEEEEES--SHHHHHHHHHHH-HHHTCCEEEEEE
T ss_pred --cCCCCcceEee-cC----cCHHHHHHHHHHhccCCCEEEEEeC--CHHHHHHHHHHH-HHcCCCceeeEE
Confidence 14567999987 33 4456789999999999995555443 224455555555 53 46766554
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=3.6e-13 Score=106.65 Aligned_cols=92 Identities=16% Similarity=0.092 Sum_probs=73.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|..+..+++... .+++++|+++ +++.++++. .++.+..+|..+... +.++||+|+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~----~~~sfD~v~ 152 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPF----SDTSMDAII 152 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSB----CTTCEEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhccC----CCCCEEEEe
Confidence 4677999999999999999987643 5899999999 998887653 458899999887765 678999999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+...+++ ++++.++|||||.+++.
T Consensus 153 ~~~~~~~-------~~e~~rvLkpgG~l~~~ 176 (268)
T d1p91a_ 153 RIYAPCK-------AEELARVVKPGGWVITA 176 (268)
T ss_dssp EESCCCC-------HHHHHHHEEEEEEEEEE
T ss_pred ecCCHHH-------HHHHHHHhCCCcEEEEE
Confidence 8766543 56789999999944433
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=3.5e-13 Score=106.41 Aligned_cols=138 Identities=12% Similarity=0.098 Sum_probs=93.4
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC---------------------------
Q 046623 50 FDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG--------------------------- 101 (218)
Q Consensus 50 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~--------------------------- 101 (218)
...++.++||+|||+|..++..+.....+|+++|+++ +++.+++++......
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 3467889999999999887665544455999999999 999998876543211
Q ss_pred --CceEEEEeecCCCCccc--cccCCCCcEEEEcccccCC----cchHHHHHHHHHHhcCCCceEEEEEee---------
Q 046623 102 --GRVEVRELVWGSDDLSQ--LSELGEFDMVIMSDVFYDP----EEMVGLGKTLKRVCGTGRHTVVWAVSE--------- 164 (218)
Q Consensus 102 --~~~~~~~~d~~~~~~~~--~~~~~~~D~Iv~~~~~~~~----~~~~~~l~~~~~lL~~gG~~~i~~~~~--------- 164 (218)
....+...|+....... ....++||+|++..++++. +++..+++++.++|||||.+++.....
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~ 210 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEA 210 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTE
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCc
Confidence 00133444554333211 1134579999998888663 367889999999999999444332111
Q ss_pred ---ccCChHHHHHHHHHhCCcEEEEE
Q 046623 165 ---VRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 165 ---~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
......+.+..++.+.||.+...
T Consensus 211 ~~~~~~~t~e~v~~~l~~aGf~v~~~ 236 (263)
T d2g72a1 211 RLTVVPVSEEEVREALVRSGYKVRDL 236 (263)
T ss_dssp EEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred ccccCCCCHHHHHHHHHHCCCeEEEE
Confidence 11235566777779999998876
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.43 E-value=3.6e-12 Score=96.74 Aligned_cols=127 Identities=16% Similarity=0.116 Sum_probs=94.6
Q ss_pred CeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 55 KSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
..|||||||+|.....+|+. +...++|+|+++ .+..+.+++...+++ ++.+..+|..... ...+..++|.|+++.
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l~--~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLT--DYFEDGEIDRLYLNF 109 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGG--GTSCTTCCSEEEEES
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccc-cceeeecCHHHHh--hhccCCceehhcccc
Confidence 47999999999999999865 446899999999 999999999998886 4999999877543 223678899998865
Q ss_pred cccCCcc--------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 133 VFYDPEE--------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 133 ~~~~~~~--------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
|-.+... ..++++.+.++|+||| .+++.+....+....+..+ ...++.....
T Consensus 110 PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG--~l~i~TD~~~Y~~~~le~~-~~~~~~~~~~ 169 (204)
T d1yzha1 110 SDPWPKKRHEKRRLTYKTFLDTFKRILPENG--EIHFKTDNRGLFEYSLVSF-SQYGMKLNGV 169 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTC--EEEEEESCHHHHHHHHHHH-HHHTCEEEEE
T ss_pred cccccchhhhhhhhhHHHHHHHHHHhCCCCc--EEEEEECCccHHHHHHHHH-HHCCcccccc
Confidence 5433222 3689999999999999 4455554444444444444 6667765554
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.42 E-value=1.3e-13 Score=103.13 Aligned_cols=127 Identities=16% Similarity=0.075 Sum_probs=87.4
Q ss_pred ccchhHHHHHHHHhc--CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCC-ceEEEEe
Q 046623 34 WLWDSALILAQFIST--HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGG-RVEVREL 109 (218)
Q Consensus 34 ~~w~~~~~l~~~l~~--~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~-~~~~~~~ 109 (218)
.+.+++..+.+.+.+ .+...+.+|||+.||||.++++++..|+.+|+++|.+. ++..+++|++..+..+ ...+...
T Consensus 22 ~~RPt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~ 101 (183)
T d2ifta1 22 GLRPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQ 101 (183)
T ss_dssp ------CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECS
T ss_pred CcCcCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccc
Confidence 344555555555554 12256789999999999999999999999999999999 9999999999887754 3455544
Q ss_pred ecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHH--HhcCCCceEEEEEee
Q 046623 110 VWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKR--VCGTGRHTVVWAVSE 164 (218)
Q Consensus 110 d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~--lL~~gG~~~i~~~~~ 164 (218)
|..+... ......+||+|++.||+ ......++++.+.+ +|+++| ++++...
T Consensus 102 d~~~~l~-~~~~~~~fDlIFlDPPY-~~~~~~~~l~~l~~~~~L~~~~--liiiE~~ 154 (183)
T d2ifta1 102 SSLDFLK-QPQNQPHFDVVFLDPPF-HFNLAEQAISLLCENNWLKPNA--LIYVETE 154 (183)
T ss_dssp CHHHHTT-SCCSSCCEEEEEECCCS-SSCHHHHHHHHHHHTTCEEEEE--EEEEEEE
T ss_pred ccccccc-ccccCCcccEEEechhH-hhhhHHHHHHHHHHhCCcCCCc--EEEEEec
Confidence 3322111 11134579999996665 44667888888865 689988 5555443
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.42 E-value=2.3e-13 Score=109.01 Aligned_cols=104 Identities=18% Similarity=0.183 Sum_probs=76.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCC---ceEEEEeecCCCCccccccCCCCcE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGG---RVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.++.+|||+|||+|..+..+++.|. +|+++|+|+ +++.|+++....+... ...+..+++..... .....++||.
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fd~ 132 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK-DVPAGDGFDA 132 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH-HSCCTTCEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccc-ccCCCCCceE
Confidence 3567999999999999999999876 899999999 9999999987765431 23444444432211 1224578999
Q ss_pred EEEc-ccccCC-------cchHHHHHHHHHHhcCCCce
Q 046623 128 VIMS-DVFYDP-------EEMVGLGKTLKRVCGTGRHT 157 (218)
Q Consensus 128 Iv~~-~~~~~~-------~~~~~~l~~~~~lL~~gG~~ 157 (218)
|++. +++.+. ++...+++.+.++|||||.+
T Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 170 (292)
T d1xvaa_ 133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLL 170 (292)
T ss_dssp EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEE
T ss_pred EEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEE
Confidence 9864 455543 34678999999999999933
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=9e-13 Score=104.69 Aligned_cols=109 Identities=16% Similarity=0.165 Sum_probs=76.8
Q ss_pred CCeEEEECCCCCHHHHHHHHh-----CC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEE--EeecCCCCc--ccccc
Q 046623 54 NKSVLELGAGAGLPGLTAARL-----GA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVR--ELVWGSDDL--SQLSE 121 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~-----~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~--~~d~~~~~~--~~~~~ 121 (218)
..+|||+|||+|.++..+++. +. .+++++|+|+ +++.++++++.......+.+. ..+++.... ....+
T Consensus 41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (280)
T d1jqea_ 41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE 120 (280)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence 347999999999988776432 11 3689999999 999999987654322233332 221111000 01124
Q ss_pred CCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 122 LGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 122 ~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
.++||+|++..++++.+++..+++.+.++|+|||.+++...
T Consensus 121 ~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 121 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp CCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEe
Confidence 67899999999999999999999999999999995555443
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.40 E-value=9.9e-13 Score=101.16 Aligned_cols=104 Identities=13% Similarity=0.023 Sum_probs=77.9
Q ss_pred HHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccccc
Q 046623 43 AQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSE 121 (218)
Q Consensus 43 ~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 121 (218)
+..+......++.+|||+|||+|..+..+++... +|+++|+++ +.+.+++++... .++.++.+|...... .
T Consensus 60 a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~-~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~----~ 131 (224)
T d1vbfa_ 60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYE----E 131 (224)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCG----G
T ss_pred HHHHHHhhhcccceEEEecCCCCHHHHHHHHHhc-ccccccccHHHHHHHHHHHhcc---cccccccCchhhcch----h
Confidence 3333334446888999999999999999988854 999999999 999999887653 468999888654433 4
Q ss_pred CCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 122 LGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 122 ~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.++||.|++.....+ +.+.+.+.|+|||++++.
T Consensus 132 ~~pfD~Iiv~~a~~~------ip~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 132 EKPYDRVVVWATAPT------LLCKPYEQLKEGGIMILP 164 (224)
T ss_dssp GCCEEEEEESSBBSS------CCHHHHHTEEEEEEEEEE
T ss_pred hhhHHHHHhhcchhh------hhHHHHHhcCCCCEEEEE
Confidence 578999998766543 234466789999955543
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=1.3e-12 Score=100.71 Aligned_cols=99 Identities=20% Similarity=0.224 Sum_probs=76.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCC----CceEEEEeecCCCCccccccCCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLG----GRVEVRELVWGSDDLSQLSELGE 124 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~ 124 (218)
.++.+|||+|||+|..+..+++. + ..+|+++|+++ +++.++++++..+.. .++.+..+|...... ..++
T Consensus 75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~----~~~~ 150 (224)
T d1i1na_ 75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA----EEAP 150 (224)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG----GGCC
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccc----hhhh
Confidence 67889999999999999888754 3 35899999999 999999999876542 457888877654443 5678
Q ss_pred CcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 125 FDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
||+|++.....+. .+.+.+.|||||++++.
T Consensus 151 fD~I~~~~~~~~i------p~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 151 YDAIHVGAAAPVV------PQALIDQLKPGGRLILP 180 (224)
T ss_dssp EEEEEECSBBSSC------CHHHHHTEEEEEEEEEE
T ss_pred hhhhhhhcchhhc------CHHHHhhcCCCcEEEEE
Confidence 9999997776543 24567889999955543
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.34 E-value=2.7e-12 Score=98.05 Aligned_cols=110 Identities=17% Similarity=0.127 Sum_probs=83.2
Q ss_pred HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc
Q 046623 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL 119 (218)
Q Consensus 41 ~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (218)
.++..+......++.+|||+|||+|..+..+++.-..+|+++|.++ .++.++++++..+.. ++.++.+|......
T Consensus 66 ~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~-nv~~~~gd~~~g~~--- 141 (215)
T d1jg1a_ 66 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSKGFP--- 141 (215)
T ss_dssp HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCG---
T ss_pred hHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCc-eeEEEECccccCCc---
Confidence 3444444444567889999999999999988865224899999999 999999999998875 58999988765544
Q ss_pred ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 120 SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
..++||.|++.....+. +. .+.+.|++||++++.+
T Consensus 142 -~~~pfD~Iiv~~a~~~i--p~----~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 142 -PKAPYDVIIVTAGAPKI--PE----PLIEQLKIGGKLIIPV 176 (215)
T ss_dssp -GGCCEEEEEECSBBSSC--CH----HHHHTEEEEEEEEEEE
T ss_pred -ccCcceeEEeecccccC--CH----HHHHhcCCCCEEEEEE
Confidence 67889999997665432 23 3556789999555443
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=1.9e-12 Score=98.23 Aligned_cols=138 Identities=16% Similarity=0.152 Sum_probs=100.5
Q ss_pred ccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceE
Q 046623 28 RPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVE 105 (218)
Q Consensus 28 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~ 105 (218)
.+.+..|++||...+. ..++.+++|+|||.|.+++.+|-. +..+++.+|.+. .+..++......++. +++
T Consensus 47 ~~~~~rHi~DSl~~~~-------~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~ 118 (207)
T d1jsxa_ 47 NEMLVRHILDSIVVAP-------YLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIE 118 (207)
T ss_dssp -CHHHHHHHHHHHHGG-------GCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEE
T ss_pred HHHHHHHhcchHhhhh-------hhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCc-cee
Confidence 3445667777755332 134569999999999999999865 446999999999 999999988888875 488
Q ss_pred EEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEE
Q 046623 106 VRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 106 ~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~ 185 (218)
++....++.. ...+||+|++... ..+..+++.+..+++++|.++++-. ....+.+..+ ..+|.+.
T Consensus 119 v~~~R~E~~~-----~~~~fD~V~sRA~----~~~~~ll~~~~~~l~~~g~~~~~KG----~~~~eEl~~~--~~~~~~~ 183 (207)
T d1jsxa_ 119 PVQSRVEEFP-----SEPPFDGVISRAF----ASLNDMVSWCHHLPGEQGRFYALKG----QMPEDEIALL--PEEYQVE 183 (207)
T ss_dssp EEECCTTTSC-----CCSCEEEEECSCS----SSHHHHHHHHTTSEEEEEEEEEEES----SCCHHHHHTS--CTTEEEE
T ss_pred eeccchhhhc-----cccccceehhhhh----cCHHHHHHHHHHhcCCCcEEEEECC----CCHHHHHHhh--hcCCEEE
Confidence 8887766543 3467999998655 6678999999999999994333332 2234445554 5678776
Q ss_pred EEE
Q 046623 186 ELT 188 (218)
Q Consensus 186 ~~~ 188 (218)
.+.
T Consensus 184 ~~~ 186 (207)
T d1jsxa_ 184 SVV 186 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.7e-12 Score=105.61 Aligned_cols=114 Identities=12% Similarity=0.038 Sum_probs=83.7
Q ss_pred HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHh-------CC-CCceEEEEee
Q 046623 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEAN-------GL-GGRVEVRELV 110 (218)
Q Consensus 41 ~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~-------~~-~~~~~~~~~d 110 (218)
.+.+.+......++.+|||+|||+|.+.+.+++. ++.+++|+|+++ +++.|+.+.+.. +. ..+++++.+|
T Consensus 139 ~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 139 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 3444454444467889999999999999988754 566899999999 999888776543 22 2458999999
Q ss_pred cCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCce
Q 046623 111 WGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHT 157 (218)
Q Consensus 111 ~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~ 157 (218)
+.+..... ....+|+|+++... +.+++...+.++.+.|||||++
T Consensus 219 ~~~~~~~~--~~~~advi~~~~~~-f~~~~~~~l~e~~r~LKpGg~i 262 (328)
T d1nw3a_ 219 FLSEEWRE--RIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRI 262 (328)
T ss_dssp TTSHHHHH--HHHHCSEEEECCTT-TCHHHHHHHHHHHTTCCTTCEE
T ss_pred cccccccc--ccCcceEEEEccee-cchHHHHHHHHHHHhCCCCcEE
Confidence 87654321 11236888886554 4577888899999999999943
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=99.24 E-value=6.5e-12 Score=97.08 Aligned_cols=167 Identities=13% Similarity=0.050 Sum_probs=107.8
Q ss_pred cccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCce
Q 046623 27 GRPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRV 104 (218)
Q Consensus 27 ~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~ 104 (218)
.+..+..|+.||.+.+. ++ +.....+++|+|||.|.+++.++- .+..+++.+|.+. -+..++......++.+ +
T Consensus 48 ~~~i~~rHi~DSl~~~~-~~---~~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n-~ 122 (239)
T d1xdza_ 48 KKEVYLKHFYDSITAAF-YV---DFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN-T 122 (239)
T ss_dssp HHHHHHHTHHHHHGGGG-TS---CGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-E
T ss_pred HHHHHHHhccchhhhhh-hh---cccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCC-c
Confidence 34445555555543221 11 112456999999999999999985 5667999999999 8999888888888864 6
Q ss_pred EEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEE
Q 046623 105 EVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRV 184 (218)
Q Consensus 105 ~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~ 184 (218)
.++....+..... ....++||+|++..+ +.+..+++.+..+++++|.++++-.........+.-..+ ...++.+
T Consensus 123 ~i~~~R~E~~~~~-~~~~~~~D~v~sRAv----a~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~-~~~~~~~ 196 (239)
T d1xdza_ 123 TFCHDRAETFGQR-KDVRESYDIVTARAV----ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAI-TTLGGEL 196 (239)
T ss_dssp EEEESCHHHHTTC-TTTTTCEEEEEEECC----SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHH-HHTTEEE
T ss_pred EEEeehhhhcccc-ccccccceEEEEhhh----hCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHH-HHcCCEE
Confidence 7776544432210 013468999999765 778999999999999999444443322222222223333 7889988
Q ss_pred EEEEccCCCCCCCceeEEEe
Q 046623 185 IELTCQLGGGCPEAFAVYEL 204 (218)
Q Consensus 185 ~~~~~~~~~~~~~~~~l~~~ 204 (218)
..+....-+.....+.++.+
T Consensus 197 ~~v~~~~lp~~~~~r~lv~i 216 (239)
T d1xdza_ 197 ENIHSFKLPIEESDRNIMVI 216 (239)
T ss_dssp EEEEEEECTTTCCEEEEEEE
T ss_pred EEEEEEeCCCCCCCEEEEEE
Confidence 77743333433344444444
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.24 E-value=2.7e-11 Score=100.47 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=78.9
Q ss_pred HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhC-------CC-CceEE-EEe
Q 046623 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANG-------LG-GRVEV-REL 109 (218)
Q Consensus 41 ~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~-------~~-~~~~~-~~~ 109 (218)
++.+.+......++.++||||||+|.+.+.+| ..++++++|+|+++ +++.|+.+.+..+ .. ....+ ..+
T Consensus 204 ~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~ 283 (406)
T d1u2za_ 204 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 283 (406)
T ss_dssp HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence 35555555555788999999999999999887 55767999999999 9999998887542 11 11222 222
Q ss_pred ecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCc
Q 046623 110 VWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 110 d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~ 156 (218)
+....... ......+|+|+++. +.+.+++...+.++.+.|||||+
T Consensus 284 ~f~~~~~~-d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGr 328 (406)
T d1u2za_ 284 SFVDNNRV-AELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCK 328 (406)
T ss_dssp CSTTCHHH-HHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCE
T ss_pred chhhcccc-ccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcE
Confidence 22222110 01224688999865 44567888999999999999993
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.19 E-value=6.7e-11 Score=90.23 Aligned_cols=144 Identities=21% Similarity=0.179 Sum_probs=95.8
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
.+.+|..++.. .++++|||+|||+|..++.+++. ...+++++|.++ ..+.++++++..++.++++++.+|..+.
T Consensus 44 ~G~lL~~lv~~---~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~ 120 (214)
T d2cl5a1 44 KGQIMDAVIRE---YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDL 120 (214)
T ss_dssp HHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred HHHHHHHHHHh---hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccccc
Confidence 34556555554 45679999999999999999764 235999999999 9999999999999988899999887654
Q ss_pred Cccc--cccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 115 DLSQ--LSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 115 ~~~~--~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
.... ....++||+|++... +........+....++|+||| ++++..-..+...+..+.+-....|.....
T Consensus 121 l~~l~~~~~~~~~D~ifiD~~-~~~~~~~~~l~~~~~lLkpGG--vIv~Ddvl~~g~~~~~~~vr~~~~~~~~~~ 192 (214)
T d2cl5a1 121 IPQLKKKYDVDTLDMVFLDHW-KDRYLPDTLLLEKCGLLRKGT--VLLADNVIVPGTPDFLAYVRGSSSFECTHY 192 (214)
T ss_dssp GGGHHHHSCCCCEEEEEECSC-GGGHHHHHHHHHHTTCEEEEE--EEEESCCCCCCCHHHHHHHHHCTTEEEEEE
T ss_pred ccchhhcccccccceeeeccc-ccccccHHHHHHHhCccCCCc--EEEEeCcCCCCChHHHHHHhccCceeehhh
Confidence 2211 113467999998422 111111223455567899999 555443334445555555522444554444
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.19 E-value=5.2e-11 Score=91.36 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=74.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh----C---CCeEEEecCcc-hHHHHHHHHHHhCC----CCceEEEEeecCCCCccc
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARL----G---ATRVVLTDVKP-LLPGLINNVEANGL----GGRVEVRELVWGSDDLSQ 118 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~----~---~~~v~~~D~~~-~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~ 118 (218)
..++.+|||+|||+|..+..+++. | ..+|+++|.++ .++.+++|+...+. ..++.+..+|......
T Consensus 78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~-- 155 (223)
T d1r18a_ 78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP-- 155 (223)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG--
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccc--
Confidence 357889999999999998887643 2 13899999999 99999988754321 1358888888765443
Q ss_pred cccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 119 LSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 119 ~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+.++||.|++.......+ +.+.+.|++||++++.+
T Consensus 156 --~~~~fD~Iiv~~a~~~~p------~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 156 --PNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPV 190 (223)
T ss_dssp --GGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred --cccceeeEEEEeechhch------HHHHHhcCCCcEEEEEE
Confidence 567899999976654322 34678999999555443
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=2.5e-10 Score=87.23 Aligned_cols=145 Identities=17% Similarity=0.096 Sum_probs=101.8
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
.+.+|..++.. .+.++|||+|||+|..++.+++. + ..+++.+|.++ ..+.|+++++..+..++++++.+|..+.
T Consensus 47 ~g~lL~~L~~~---~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~ 123 (219)
T d2avda1 47 QAQLLANLARL---IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET 123 (219)
T ss_dssp HHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH
T ss_pred HHHHHHHHHHc---cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhc
Confidence 34455555444 46779999999999999999754 2 35999999999 9999999999999999999999876543
Q ss_pred Ccccc--ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccC--------------ChHHHHHHHHH
Q 046623 115 DLSQL--SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRT--------------RTGDCLHELIM 178 (218)
Q Consensus 115 ~~~~~--~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~--------------~~~~~~~~~~~ 178 (218)
..... ...++||+|+...- .......++.+.++|+||| ++++...... ...++.+.+..
T Consensus 124 l~~~~~~~~~~~fD~ifiD~d---k~~y~~~~~~~~~lL~~GG--vii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~ 198 (219)
T d2avda1 124 LDELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGG--ILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRR 198 (219)
T ss_dssp HHHHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEE--EEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHH
T ss_pred chhhhhhcccCCccEEEEeCC---HHHHHHHHHHHHHHhcCCc--EEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHh
Confidence 32111 13468999999532 3567888899999999999 4444333110 13344455534
Q ss_pred hCCcEEEEEEcc
Q 046623 179 SQGFRVIELTCQ 190 (218)
Q Consensus 179 ~~gf~~~~~~~~ 190 (218)
+..|....+|+.
T Consensus 199 d~r~~~~llPig 210 (219)
T d2avda1 199 DVRVYISLLPLG 210 (219)
T ss_dssp CTTEEEEEECST
T ss_pred CCCEEEEEeecC
Confidence 556776666653
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.12 E-value=1.6e-10 Score=89.78 Aligned_cols=122 Identities=11% Similarity=0.072 Sum_probs=89.0
Q ss_pred CCCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
....+|||+|||+|..+..++ +.+..+++..|..+.++ ..+...+++++.+|+.+.. ...|++++
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~-------~~~~~~ri~~~~gd~~~~~-------p~~D~~~l 145 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIE-------NAPPLSGIEHVGGDMFASV-------PQGDAMIL 145 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT-------TCCCCTTEEEEECCTTTCC-------CCEEEEEE
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhh-------ccCCCCCeEEecCCccccc-------ccceEEEE
Confidence 345799999999999999986 44556899999765432 2334477999999986532 24599999
Q ss_pred cccccCCcc--hHHHHHHHHHHhcCCCceEEEEEeec-------------------------cCChHHHHHHHHHhCCcE
Q 046623 131 SDVFYDPEE--MVGLGKTLKRVCGTGRHTVVWAVSEV-------------------------RTRTGDCLHELIMSQGFR 183 (218)
Q Consensus 131 ~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~~~~~~-------------------------~~~~~~~~~~~~~~~gf~ 183 (218)
..++|+.++ ...+++++++.|+|||+++|.-.... +....+.+..++++.||.
T Consensus 146 ~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~ 225 (244)
T d1fp1d2 146 KAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFS 225 (244)
T ss_dssp ESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCS
T ss_pred ehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCC
Confidence 999998754 67889999999999996665532210 111245566777999999
Q ss_pred EEEE
Q 046623 184 VIEL 187 (218)
Q Consensus 184 ~~~~ 187 (218)
..++
T Consensus 226 ~v~v 229 (244)
T d1fp1d2 226 KFQV 229 (244)
T ss_dssp EEEE
T ss_pred ceEE
Confidence 8887
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.09 E-value=6.6e-10 Score=89.86 Aligned_cols=162 Identities=12% Similarity=-0.014 Sum_probs=101.9
Q ss_pred hhHHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHh----C--CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEE
Q 046623 37 DSALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARL----G--ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRE 108 (218)
Q Consensus 37 ~~~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~----~--~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~ 108 (218)
.-...+.+++.. ....++.+|||.+||+|.+.+.+... . ..+++|+|+++ ++..|+.++...+.. ..+..
T Consensus 100 ~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~--~~~~~ 177 (328)
T d2f8la1 100 SIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK--MTLLH 177 (328)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC--CEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh--hhhhc
Confidence 344455555543 12245678999999999998887432 1 13799999999 999999999888754 56666
Q ss_pred eecCCCCccccccCCCCcEEEEcccccCCc------------------chHHHHHHHHHHhcCCCceEEEEEeec-cCCh
Q 046623 109 LVWGSDDLSQLSELGEFDMVIMSDVFYDPE------------------EMVGLGKTLKRVCGTGRHTVVWAVSEV-RTRT 169 (218)
Q Consensus 109 ~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~-~~~~ 169 (218)
.|..... ...+||+|++|+|+.... ....++..+.++|++||.+.+++.... ....
T Consensus 178 ~d~~~~~-----~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~ 252 (328)
T d2f8la1 178 QDGLANL-----LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSD 252 (328)
T ss_dssp SCTTSCC-----CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTT
T ss_pred ccccccc-----ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCch
Confidence 6644332 457899999999984211 133478889999999996666655432 2223
Q ss_pred HHHHHHHHHhCCcEEEEE---EccCCCCCCCceeEEEecC
Q 046623 170 GDCLHELIMSQGFRVIEL---TCQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 170 ~~~~~~~~~~~gf~~~~~---~~~~~~~~~~~~~l~~~~~ 206 (218)
.+.++..+.+. +.+..+ |-....+......++-+.+
T Consensus 253 ~~~lR~~L~~~-~~i~~ii~lp~~~F~~~~~~t~ilvl~K 291 (328)
T d2f8la1 253 FAKVDKFIKKN-GHIEGIIKLPETLFKSEQARKSILILEK 291 (328)
T ss_dssp HHHHHHHHHHH-EEEEEEEECCGGGSCC-CCCEEEEEEEE
T ss_pred hHHHHHHHHhC-CcEEEEEECCccccCCCCCCeEEEEEEC
Confidence 34344443433 333333 4333344444455555544
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.07 E-value=4.1e-10 Score=86.39 Aligned_cols=111 Identities=15% Similarity=0.236 Sum_probs=86.6
Q ss_pred HHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC
Q 046623 39 ALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD 115 (218)
Q Consensus 39 ~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 115 (218)
+++|..++.. .+.++|||+|+++|..++.+++. + ..+++.+|.++ ..+.|+++++..|..++++++.++..+..
T Consensus 48 g~~L~~L~~~---~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L 124 (227)
T d1susa1 48 GQFLSMLLKL---INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVL 124 (227)
T ss_dssp HHHHHHHHHH---HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHH
T ss_pred HHHHHHHHHh---cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHH
Confidence 4455555544 45679999999999999998754 2 35999999999 99999999999999888999998775443
Q ss_pred cccc---ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 116 LSQL---SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 116 ~~~~---~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
.... ...++||+|++.. +...+...++.+.++|+|||
T Consensus 125 ~~l~~~~~~~~~fD~iFiDa---~k~~y~~~~e~~~~ll~~gG 164 (227)
T d1susa1 125 DEMIKDEKNHGSYDFIFVDA---DKDNYLNYHKRLIDLVKVGG 164 (227)
T ss_dssp HHHHHCGGGTTCBSEEEECS---CSTTHHHHHHHHHHHBCTTC
T ss_pred HHHHhccccCCceeEEEecc---chhhhHHHHHHHHhhcCCCc
Confidence 2111 1246899999943 23667889999999999999
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.03 E-value=6.5e-10 Score=86.31 Aligned_cols=120 Identities=11% Similarity=0.169 Sum_probs=87.6
Q ss_pred CCeEEEECCCCCHHHHHHHH-hCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 54 NKSVLELGAGAGLPGLTAAR-LGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
..+|||+|||+|..+..+++ ++..+++..|..+.++. .+...++.++.+|+.+. ...+|++++..
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~-------~~~~~rv~~~~gD~f~~-------~p~aD~~~l~~ 146 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVEN-------LSGSNNLTYVGGDMFTS-------IPNADAVLLKY 146 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT-------CCCBTTEEEEECCTTTC-------CCCCSEEEEES
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHh-------CcccCceEEEecCcccC-------CCCCcEEEEEe
Confidence 46899999999999999864 45569999998654433 23447899999998753 23589999999
Q ss_pred cccCCcc--hHHHHHHHHHHhcCC---CceEEEEEee------------------------ccCChHHHHHHHHHhCCcE
Q 046623 133 VFYDPEE--MVGLGKTLKRVCGTG---RHTVVWAVSE------------------------VRTRTGDCLHELIMSQGFR 183 (218)
Q Consensus 133 ~~~~~~~--~~~~l~~~~~lL~~g---G~~~i~~~~~------------------------~~~~~~~~~~~~~~~~gf~ 183 (218)
++|+.++ ...+++++++.|+|| |+++|+-..- .+....+.+..++++.||.
T Consensus 147 vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~ 226 (244)
T d1fp2a2 147 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQ 226 (244)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCC
T ss_pred ecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCc
Confidence 9998754 468999999999998 4344431110 1122455677777999999
Q ss_pred EEEE
Q 046623 184 VIEL 187 (218)
Q Consensus 184 ~~~~ 187 (218)
..++
T Consensus 227 ~~~i 230 (244)
T d1fp2a2 227 HYKI 230 (244)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9887
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.89 E-value=2.5e-09 Score=82.86 Aligned_cols=120 Identities=18% Similarity=0.091 Sum_probs=86.9
Q ss_pred CCeEEEECCCCCHHHHHHHH-hCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 54 NKSVLELGAGAGLPGLTAAR-LGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
..+|||+|||+|..++.+++ ++..+++..|..+.++. .....++.+..+|+.+.. + ..|++++..
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~-------~~~~~r~~~~~~d~~~~~-----P--~ad~~~l~~ 147 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIED-------APSYPGVEHVGGDMFVSI-----P--KADAVFMKW 147 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTT-------CCCCTTEEEEECCTTTCC-----C--CCSCEECSS
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhh-------cccCCceEEecccccccC-----C--CcceEEEEE
Confidence 46899999999999999874 45569999998773322 223367999998886532 2 367788888
Q ss_pred cccCC--cchHHHHHHHHHHhcCCCceEEEEEe--------------------------eccCChHHHHHHHHHhCCcEE
Q 046623 133 VFYDP--EEMVGLGKTLKRVCGTGRHTVVWAVS--------------------------EVRTRTGDCLHELIMSQGFRV 184 (218)
Q Consensus 133 ~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~~~--------------------------~~~~~~~~~~~~~~~~~gf~~ 184 (218)
++|+. ++...+++++++.|+|||++++.-.. ..+....+.++.++++.||..
T Consensus 148 vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~ 227 (243)
T d1kyza2 148 ICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQG 227 (243)
T ss_dssp SSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSC
T ss_pred EeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCc
Confidence 88775 45788999999999999977665211 011223455667779999988
Q ss_pred EEE
Q 046623 185 IEL 187 (218)
Q Consensus 185 ~~~ 187 (218)
.++
T Consensus 228 vkv 230 (243)
T d1kyza2 228 FKV 230 (243)
T ss_dssp EEE
T ss_pred EEE
Confidence 877
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.83 E-value=2.2e-09 Score=88.10 Aligned_cols=106 Identities=18% Similarity=0.096 Sum_probs=78.5
Q ss_pred CCCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCc--------------eEEEEeecCCCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGR--------------VEVRELVWGSDD 115 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~--------------~~~~~~d~~~~~ 115 (218)
.++.+|||..||+|..++..+ +.++.+|++.|+|+ +++.+++|++.|+..+. +.+...|+....
T Consensus 44 ~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 44 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 367799999999999999765 46777999999999 99999999999986531 222222221111
Q ss_pred ccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeec
Q 046623 116 LSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV 165 (218)
Q Consensus 116 ~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~ 165 (218)
......||+|.+ ||+. .+.++++.+.+.++.|| ++.++++..
T Consensus 124 ---~~~~~~fDvIDi-DPfG---s~~pfldsAi~a~~~~G-ll~vTaTD~ 165 (375)
T d2dula1 124 ---AERHRYFHFIDL-DPFG---SPMEFLDTALRSAKRRG-ILGVTATDG 165 (375)
T ss_dssp ---HHSTTCEEEEEE-CCSS---CCHHHHHHHHHHEEEEE-EEEEEECCH
T ss_pred ---HhhcCcCCcccC-CCCC---CcHHHHHHHHHHhccCC-EEEEEecCc
Confidence 113457999999 6664 45889999999999988 666766663
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.83 E-value=4e-08 Score=74.31 Aligned_cols=151 Identities=14% Similarity=0.003 Sum_probs=89.6
Q ss_pred HHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHH-hC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc
Q 046623 42 LAQFIST-HFDFQNKSVLELGAGAGLPGLTAAR-LG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS 117 (218)
Q Consensus 42 l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~-~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (218)
++++|.. ....++.+|||.|||+|.+...+.+ .+ ...++++|+++ +...+ ....+...|.....
T Consensus 7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~----------~~~~~~~~~~~~~~-- 74 (223)
T d2ih2a1 7 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWE-- 74 (223)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCC--
T ss_pred HHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc----------ccceeeeeehhccc--
Confidence 4444444 2235678999999999998887753 33 35799999998 65332 22455665554332
Q ss_pred ccccCCCCcEEEEcccccCCc-----------------------------chHHHHHHHHHHhcCCCceEEEEEeecc-C
Q 046623 118 QLSELGEFDMVIMSDVFYDPE-----------------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVR-T 167 (218)
Q Consensus 118 ~~~~~~~~D~Iv~~~~~~~~~-----------------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~-~ 167 (218)
...+||+|++++|+.... ....++..+.++|++||.+.+++....- .
T Consensus 75 ---~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~ 151 (223)
T d2ih2a1 75 ---PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVL 151 (223)
T ss_dssp ---CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTC
T ss_pred ---cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccC
Confidence 457899999998874210 1346678888999999966666544321 1
Q ss_pred ChHHHHHHHHHhCCcEEEEEEccCCCCCCCceeEEEecCC
Q 046623 168 RTGDCLHELIMSQGFRVIELTCQLGGGCPEAFAVYELIPP 207 (218)
Q Consensus 168 ~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (218)
...+.+++.+.+...-....|.....+......++.+.+.
T Consensus 152 ~~~~~lR~~l~~~~~i~i~~~~~~F~~~~v~t~i~~~~k~ 191 (223)
T d2ih2a1 152 EDFALLREFLAREGKTSVYYLGEVFPQKKVSAVVIRFQKS 191 (223)
T ss_dssp GGGHHHHHHHHHHSEEEEEEEESCSTTCCCCEEEEEEESS
T ss_pred cchHHHHHHHHhcCCEEEEcchhcCCCCCCcEEEEEEEeC
Confidence 1233343433433322233354444444444555555544
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.81 E-value=4.9e-08 Score=77.13 Aligned_cols=146 Identities=14% Similarity=0.079 Sum_probs=97.8
Q ss_pred cchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecC
Q 046623 35 LWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWG 112 (218)
Q Consensus 35 ~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~ 112 (218)
+.|.+..+.-.+.. ..++.+|||+.+|.|.=+..++.... .+++++|.++ -+..++.+++..++.+ +.+...|..
T Consensus 86 vQD~sS~l~~~~L~--~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~~~~ 162 (284)
T d1sqga2 86 VQDASAQGCMTWLA--PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDGRY 162 (284)
T ss_dssp ECCHHHHTHHHHHC--CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCTTC
T ss_pred eccccccccccccC--ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccc-eeeeccccc
Confidence 45544444444433 25688999999999998888875543 5899999999 9999999999998763 333322211
Q ss_pred CCCccccccCCCCcEEEEcccccCCc----------------------chHHHHHHHHHHhcCCCceEEEEEeeccCChH
Q 046623 113 SDDLSQLSELGEFDMVIMSDVFYDPE----------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTG 170 (218)
Q Consensus 113 ~~~~~~~~~~~~~D~Iv~~~~~~~~~----------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~ 170 (218)
.........||.|++..|+.... ....++..+.++|+|||.++.-+++-....-+
T Consensus 163 ---~~~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE 239 (284)
T d1sqga2 163 ---PSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENS 239 (284)
T ss_dssp ---THHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTH
T ss_pred ---cchhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCH
Confidence 11122456899999988875321 14668888888999999444445544455566
Q ss_pred HHHHHHHHh-CCcEEEE
Q 046623 171 DCLHELIMS-QGFRVIE 186 (218)
Q Consensus 171 ~~~~~~~~~-~gf~~~~ 186 (218)
+.++.++++ .+|....
T Consensus 240 ~vv~~~l~~~~~~~~~~ 256 (284)
T d1sqga2 240 LQIKAFLQRTADAELCE 256 (284)
T ss_dssp HHHHHHHHHCTTCEECS
T ss_pred HHHHHHHHhCCCcEEec
Confidence 677776554 4565543
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.78 E-value=1e-07 Score=76.22 Aligned_cols=147 Identities=14% Similarity=0.017 Sum_probs=102.8
Q ss_pred ccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEee
Q 046623 34 WLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELV 110 (218)
Q Consensus 34 ~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d 110 (218)
.+.|.+..+.-.+.. ..++.+|||+.||.|.=+..++.. ....+++.|.++ -+..++++++..++.+ +.+...|
T Consensus 99 ~vQD~aS~l~~~~l~--~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~-i~~~~~d 175 (313)
T d1ixka_ 99 YIQEASSMYPPVALD--PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSS 175 (313)
T ss_dssp EECCHHHHHHHHHHC--CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSC
T ss_pred EEecccccchhhccc--CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc-ccccccc
Confidence 345655555555443 257889999999999988877643 235899999999 9999999999998764 4444433
Q ss_pred cCCCCccccccCCCCcEEEEcccccCCc----------------------chHHHHHHHHHHhcCCCceEEEEEeeccCC
Q 046623 111 WGSDDLSQLSELGEFDMVIMSDVFYDPE----------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTR 168 (218)
Q Consensus 111 ~~~~~~~~~~~~~~~D~Iv~~~~~~~~~----------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~ 168 (218)
..... .....||.|++..|+.... ...+++..+.+++||||.++.-+++-....
T Consensus 176 ~~~~~----~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eE 251 (313)
T d1ixka_ 176 SLHIG----ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEE 251 (313)
T ss_dssp GGGGG----GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGG
T ss_pred ccccc----cccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHh
Confidence 22221 1457899999988875431 156688888999999995444455555666
Q ss_pred hHHHHHHHHHhCCcEEEEE
Q 046623 169 TGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 169 ~~~~~~~~~~~~gf~~~~~ 187 (218)
-+..+.++++..+|....+
T Consensus 252 NE~VV~~~L~~~~~~~~~~ 270 (313)
T d1ixka_ 252 NEFVIQWALDNFDVELLPL 270 (313)
T ss_dssp THHHHHHHHHHSSEEEECC
T ss_pred HHHHHHHHHhcCCCEEeec
Confidence 6777788777777776544
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.77 E-value=2.2e-08 Score=77.03 Aligned_cols=85 Identities=13% Similarity=0.033 Sum_probs=64.0
Q ss_pred HHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccc
Q 046623 43 AQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLS 120 (218)
Q Consensus 43 ~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (218)
.+.+.+ ....++++|||||||+|.++..+++.+. +++++|+++ .++.+++++... .+++++.+|+.+...
T Consensus 10 ~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~~~---- 81 (235)
T d1qama_ 10 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKF---- 81 (235)
T ss_dssp HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCC----
T ss_pred HHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhccc----
Confidence 344433 3336789999999999999999998865 999999999 988888776443 569999999877654
Q ss_pred cCCCCcEEEEccccc
Q 046623 121 ELGEFDMVIMSDVFY 135 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~ 135 (218)
+......|++|-|++
T Consensus 82 ~~~~~~~vv~NLPYn 96 (235)
T d1qama_ 82 PKNQSYKIFGNIPYN 96 (235)
T ss_dssp CSSCCCEEEEECCGG
T ss_pred cccccceeeeeehhh
Confidence 333445677776764
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.77 E-value=3.1e-09 Score=79.35 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=79.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-ccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~D~I 128 (218)
.++..+||++||+|..+..+++. +..+++++|.++ +++.++++++..+ .++.++.+++.+.... .....+++|.|
T Consensus 22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~~~~~~~vdgI 99 (192)
T d1m6ya2 22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLGIEKVDGI 99 (192)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHHHcCCCCccee
Confidence 57889999999999999988654 456999999999 9999999987765 5688888776543211 01134789999
Q ss_pred EEcccccC---------CcchHHHHHHHHHHhcCCCceEEEE
Q 046623 129 IMSDVFYD---------PEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 129 v~~~~~~~---------~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
++...+.+ .......+..+.++|+|||.++++.
T Consensus 100 l~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 100 LMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp EEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred eeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 98544321 1335677888889999999555544
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.72 E-value=1.4e-08 Score=79.91 Aligned_cols=106 Identities=12% Similarity=0.003 Sum_probs=77.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh---------CCCCceEEEEeecCCCCcccccc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN---------GLGGRVEVRELVWGSDDLSQLSE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~---------~~~~~~~~~~~d~~~~~~~~~~~ 121 (218)
.++++||-+|+|.|..+..+.+.+..+++.+|+++ .++.+++.+..+ ...++++++..|...... .
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~----~ 146 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK----N 146 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH----H
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh----c
Confidence 45679999999999999988777777999999999 888888765322 124678898877654321 4
Q ss_pred CCCCcEEEEcccccCCc-----chHHHHHHHHHHhcCCCceEEEEE
Q 046623 122 LGEFDMVIMSDVFYDPE-----EMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 122 ~~~~D~Iv~~~~~~~~~-----~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
.++||+|++. .+.... ...++++.+.+.|+|+|.+++.+.
T Consensus 147 ~~~yDvIi~D-~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~ 191 (276)
T d1mjfa_ 147 NRGFDVIIAD-STDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 191 (276)
T ss_dssp CCCEEEEEEE-CCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCCCEEEEe-CCCCCCCcccccCHHHHHhhHhhcCCCceEEEecC
Confidence 5789999973 332211 136799999999999994444443
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.67 E-value=1.1e-07 Score=79.31 Aligned_cols=159 Identities=14% Similarity=0.089 Sum_probs=100.0
Q ss_pred HHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhC--------------CCeEEEecCcc-hHHHHHHHHHHhCCCC-ce
Q 046623 42 LAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLG--------------ATRVVLTDVKP-LLPGLINNVEANGLGG-RV 104 (218)
Q Consensus 42 l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~--------------~~~v~~~D~~~-~~~~a~~~~~~~~~~~-~~ 104 (218)
+.++|.. ....++.+|+|..||+|.+.+.+.+.- ...+.++|+++ +...++-|+...+... ..
T Consensus 150 Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~ 229 (425)
T d2okca1 150 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 229 (425)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred hhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence 4444444 122457799999999999988875421 02589999999 9999999998877642 24
Q ss_pred EEEEeecCCCCccccccCCCCcEEEEcccccCCc-----------------chHHHHHHHHHHhcCCCceEEEEEeec--
Q 046623 105 EVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPE-----------------EMVGLGKTLKRVCGTGRHTVVWAVSEV-- 165 (218)
Q Consensus 105 ~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~-----------------~~~~~l~~~~~lL~~gG~~~i~~~~~~-- 165 (218)
.+...|..... ...+||+|++|+|+.... ....++..+.++|++||++.+++....
T Consensus 230 ~i~~~d~l~~~-----~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~ 304 (425)
T d2okca1 230 PIVCEDSLEKE-----PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLF 304 (425)
T ss_dssp SEEECCTTTSC-----CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHH
T ss_pred eeecCchhhhh-----cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhh
Confidence 55555554332 457899999999985321 124588999999999997777766443
Q ss_pred cCChHHHHHHHHHhCCcEEEEE---EccCCCCCCCceeEEEecC
Q 046623 166 RTRTGDCLHELIMSQGFRVIEL---TCQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 166 ~~~~~~~~~~~~~~~gf~~~~~---~~~~~~~~~~~~~l~~~~~ 206 (218)
+......++..+.+. +.+..+ |-..-.+......++-+.+
T Consensus 305 ~~~~~~~iR~~Ll~~-~~i~aIi~LP~~~F~~t~v~t~Ilil~K 347 (425)
T d2okca1 305 EAGAGETIRKRLLQD-FNLHTILRLPTGIFYAQGVKANVLFFSK 347 (425)
T ss_dssp CSTHHHHHHHHHHHH-EEEEEEEECCSSSSSSTTCCEEEEEEEE
T ss_pred hhhhHHHHHHHHHHh-cchhHhhcCCcccccCCCCCeEEEEEEC
Confidence 333434444443332 233333 4433334444445555544
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.65 E-value=2.6e-07 Score=67.91 Aligned_cols=152 Identities=14% Similarity=0.090 Sum_probs=99.5
Q ss_pred hhHHHHHHHHhcCC-CCCCCeEEEECCCCCHHHHHHHH-hCC-CeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 37 DSALILAQFISTHF-DFQNKSVLELGAGAGLPGLTAAR-LGA-TRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 37 ~~~~~l~~~l~~~~-~~~~~~vLDlG~G~G~~~~~l~~-~~~-~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
.+...|.+...... ..++.+||||||++|.++..+.+ .+. ..++++|..++- .+ ..+.++.+|..+
T Consensus 5 RaafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~----------~i-~~~~~~~~d~~~ 73 (180)
T d1ej0a_ 5 RAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD----------PI-VGVDFLQGDFRD 73 (180)
T ss_dssp HHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC----------CC-TTEEEEESCTTS
T ss_pred HHHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc----------cc-CCceEeeccccc
Confidence 45566777655532 25778999999999999998864 333 589999987721 12 347888888776
Q ss_pred CCccc----cccCCCCcEEEEcccccCC-----------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHH
Q 046623 114 DDLSQ----LSELGEFDMVIMSDVFYDP-----------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIM 178 (218)
Q Consensus 114 ~~~~~----~~~~~~~D~Iv~~~~~~~~-----------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~ 178 (218)
..... .....++|+|++....... ......+..+.++|++||.+++=+... ....+++..+
T Consensus 74 ~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g--~~~~~l~~~l-- 149 (180)
T d1ej0a_ 74 ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG--EGFDEYLREI-- 149 (180)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS--TTHHHHHHHH--
T ss_pred chhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC--ccHHHHHHHH--
Confidence 43221 1234689999985443221 123456667788999999555555432 4455555555
Q ss_pred hCCcEEEEE--EccCCCCCCCceeEEE
Q 046623 179 SQGFRVIEL--TCQLGGGCPEAFAVYE 203 (218)
Q Consensus 179 ~~gf~~~~~--~~~~~~~~~~~~~l~~ 203 (218)
+.-|.-..+ |-..++...+.+.+..
T Consensus 150 ~~~F~~V~~~KP~aSR~~SsE~Ylv~~ 176 (180)
T d1ej0a_ 150 RSLFTKVKVRKPDSSRARSREVYIVAT 176 (180)
T ss_dssp HHHEEEEEEECCTTSCTTCCEEEEEEE
T ss_pred HhhcCEEEEECCCCcccCCceEEEEEe
Confidence 567776665 7777777877777644
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.58 E-value=4.1e-09 Score=81.64 Aligned_cols=85 Identities=15% Similarity=0.091 Sum_probs=64.2
Q ss_pred HHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccC
Q 046623 44 QFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSEL 122 (218)
Q Consensus 44 ~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 122 (218)
..+......++++|||||||+|.++..+++.+. +|+++|+++ +++.+++++... .++.++.+|+.+... +.
T Consensus 20 kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~~---~n~~ii~~D~l~~~~----~~ 91 (245)
T d1yuba_ 20 QIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKLN---TRVTLIHQDILQFQF----PN 91 (245)
T ss_dssp HHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTTC---SEEEECCSCCTTTTC----CC
T ss_pred HHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhhc---cchhhhhhhhhcccc----cc
Confidence 333333345778999999999999999998865 999999999 888876655332 468999999887765 44
Q ss_pred CCCcEEEEcccccC
Q 046623 123 GEFDMVIMSDVFYD 136 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~ 136 (218)
...+.|++|-|++-
T Consensus 92 ~~~~~vv~NLPY~I 105 (245)
T d1yuba_ 92 KQRYKIVGNIPYHL 105 (245)
T ss_dssp SSEEEEEEECCSSS
T ss_pred ceeeeEeeeeehhh
Confidence 56677888777654
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=1.7e-07 Score=73.57 Aligned_cols=88 Identities=20% Similarity=0.189 Sum_probs=68.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..++++|||+|+|.|.++..+++.+. +++++|+++ +++.+++.+.......+++++.+|+..... ...+.|+
T Consensus 19 ~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~------~~~~~vV 91 (278)
T d1zq9a1 19 LRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL------PFFDTCV 91 (278)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC------CCCSEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh------hhhhhhh
Confidence 35688999999999999999998875 999999999 999999888766555679999999876643 3467888
Q ss_pred EcccccCCcchHHHHHHHH
Q 046623 130 MSDVFYDPEEMVGLGKTLK 148 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~ 148 (218)
+|-|++- ..+++..+.
T Consensus 92 ~NLPY~I---ss~il~~~~ 107 (278)
T d1zq9a1 92 ANLPYQI---SSPFVFKLL 107 (278)
T ss_dssp EECCGGG---HHHHHHHHH
T ss_pred cchHHHH---HHHHHHHHH
Confidence 8888753 244544443
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=6.8e-07 Score=70.70 Aligned_cols=142 Identities=13% Similarity=0.075 Sum_probs=90.2
Q ss_pred cchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeec
Q 046623 35 LWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVW 111 (218)
Q Consensus 35 ~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~ 111 (218)
+.|.+..+.-.+.. ..++.+|||+.||+|.-+..++.. +..+++++|+++ -++.++.|++..|+.+ +.+...|.
T Consensus 78 ~QD~sS~l~~~~L~--~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~-~~~~~~d~ 154 (293)
T d2b9ea1 78 LQDRASCLPAMLLD--PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDF 154 (293)
T ss_dssp ECCTGGGHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCG
T ss_pred EcCCcccccccccC--CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc-eeeeehhh
Confidence 34444434333332 256889999999999988877533 345899999999 9999999999999864 77777665
Q ss_pred CCCCccccccCCCCcEEEEcccccCCcc------------------------hHHHHHHHHHHhcCCCceEEEEEeeccC
Q 046623 112 GSDDLSQLSELGEFDMVIMSDVFYDPEE------------------------MVGLGKTLKRVCGTGRHTVVWAVSEVRT 167 (218)
Q Consensus 112 ~~~~~~~~~~~~~~D~Iv~~~~~~~~~~------------------------~~~~l~~~~~lL~~gG~~~i~~~~~~~~ 167 (218)
...... ....++||.|++..|+..... ...++..+. .++|||.++..+++-...
T Consensus 155 ~~~~~~-~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ 232 (293)
T d2b9ea1 155 LAVSPS-DPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQE 232 (293)
T ss_dssp GGSCTT-CGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGG
T ss_pred hhhccc-ccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChh
Confidence 433211 113367999999888754210 112333333 357888444334444455
Q ss_pred ChHHHHHHHHHhCC
Q 046623 168 RTGDCLHELIMSQG 181 (218)
Q Consensus 168 ~~~~~~~~~~~~~g 181 (218)
.-++.+..+++++.
T Consensus 233 ENe~vV~~~L~~~~ 246 (293)
T d2b9ea1 233 ENEDVVRDALQQNP 246 (293)
T ss_dssp GTHHHHHHHHTTST
T ss_pred HhHHHHHHHHHhCC
Confidence 56677777755543
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.55 E-value=1.1e-07 Score=75.91 Aligned_cols=110 Identities=15% Similarity=0.050 Sum_probs=79.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhC----CCCceEEEEeecCCCCccccccCCCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANG----LGGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
...++||.||.|.|.....+.+.. ..+++.+|+++ .++.+++.+...+ -.++++++.+|...... ....+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~---~~~~~y 152 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE---RTEERY 152 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH---HCCCCE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhh---hcCCcc
Confidence 356799999999999999987664 46999999999 9999988875421 13578999888765432 145689
Q ss_pred cEEEEc--ccccCCc-----chHHHHHHHHHHhcCCCceEEEEEee
Q 046623 126 DMVIMS--DVFYDPE-----EMVGLGKTLKRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 126 D~Iv~~--~~~~~~~-----~~~~~l~~~~~lL~~gG~~~i~~~~~ 164 (218)
|+|++. +++.... -..++++.+.++|+|||.+++.+...
T Consensus 153 DvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~ 198 (312)
T d1uira_ 153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMI 198 (312)
T ss_dssp EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEE
T ss_pred cEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCc
Confidence 999963 2332211 13679999999999999555554433
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.52 E-value=7.1e-08 Score=71.87 Aligned_cols=101 Identities=14% Similarity=0.084 Sum_probs=64.9
Q ss_pred CCCCeEEEECCCCCH----HHHHHHHhCC-----CeEEEecCcc-hHHHHHHHHH--------------Hh----CCC--
Q 046623 52 FQNKSVLELGAGAGL----PGLTAARLGA-----TRVVLTDVKP-LLPGLINNVE--------------AN----GLG-- 101 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~----~~~~l~~~~~-----~~v~~~D~~~-~~~~a~~~~~--------------~~----~~~-- 101 (218)
.+..+|++.|||+|- +++.+..... .+++++|+++ +++.|++..- .. ...
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 345699999999995 3443433211 2699999999 9988874321 00 000
Q ss_pred ----------CceEEEEeecCCCCccccccCCCCcEEEEcccccCC--cchHHHHHHHHHHhcCCC
Q 046623 102 ----------GRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP--EEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 102 ----------~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG 155 (218)
..+.+...+...... .+.++||+|+|.+++.+. +...++++.+.+.|+|||
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG 165 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQY---NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDG 165 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSC---CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEE
T ss_pred ceeehHHHHHHHHHHhhhhcccccc---CCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCc
Confidence 112333322222211 145789999999998754 445789999999999999
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=8.3e-07 Score=75.73 Aligned_cols=161 Identities=12% Similarity=0.037 Sum_probs=96.5
Q ss_pred HHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHh----C---------------CCeEEEecCcc-hHHHHHHHHHHhCC
Q 046623 42 LAQFIST-HFDFQNKSVLELGAGAGLPGLTAARL----G---------------ATRVVLTDVKP-LLPGLINNVEANGL 100 (218)
Q Consensus 42 l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~----~---------------~~~v~~~D~~~-~~~~a~~~~~~~~~ 100 (218)
+.++|.. ....++.+|+|..||+|.+.+.+.++ . ...++++|+++ +...++-|+...+.
T Consensus 152 Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~ 231 (524)
T d2ar0a1 152 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 231 (524)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred hhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcc
Confidence 4444444 12245679999999999998876432 1 02589999999 99999999887765
Q ss_pred CCce----EEEEeecCCCCccccccCCCCcEEEEcccccCCc--------------chHHHHHHHHHHhcCCCceEEEEE
Q 046623 101 GGRV----EVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPE--------------EMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 101 ~~~~----~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~--------------~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
...+ .+...+.... ......+||+|++|||+.... ..-.++..+.+.|++||++.+++.
T Consensus 232 ~~~i~~~~~~~~~~~l~~---d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 232 EGNLDHGGAIRLGNTLGS---DGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp CCBGGGTBSEEESCTTSH---HHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccchhhhhhhhhh---cccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEe
Confidence 4221 1222221111 112446899999999985321 123488999999999997777766
Q ss_pred eec--cCChHHHHHHHHHhCCcEEEEE---EccCCCCCCCceeEEEecC
Q 046623 163 SEV--RTRTGDCLHELIMSQGFRVIEL---TCQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 163 ~~~--~~~~~~~~~~~~~~~gf~~~~~---~~~~~~~~~~~~~l~~~~~ 206 (218)
... +......+++.+.+. +.+..+ |-....+...-..++-|.+
T Consensus 309 ~~~Lf~~~~~~~iR~~Ll~~-~~i~aII~LP~~~F~~t~i~t~Il~l~K 356 (524)
T d2ar0a1 309 DNVLFEGGKGTDIRRDLMDK-CHLHTILRLPTGIFYAQGVKTNVLFFTK 356 (524)
T ss_dssp HHHHHCCTHHHHHHHHHHHH-EEEEEEEECCSSCSSSCSCCEEEEEEEE
T ss_pred hHHhhhhhhhHHHHHHHHHc-CCceEEEECCCCcCCCCCCCeEEEEEEC
Confidence 443 344444444443332 233333 4333334444455555543
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.39 E-value=5e-07 Score=70.78 Aligned_cols=105 Identities=12% Similarity=0.049 Sum_probs=76.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhC---CCCceEEEEeecCCCCccccccCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANG---LGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
.+.++||-+|.|.|..+..+.+. +..+++.+|+++ .++.+++.+..+. -..+++++..|...... ...++||
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~---~~~~~yD 150 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA---KSENQYD 150 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH---TCCSCEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHh---hcCCCCC
Confidence 35679999999999999999875 457999999999 8898888775432 13578888877544322 1457899
Q ss_pred EEEEccc--ccCCc--chHHHHHHHHHHhcCCCceEE
Q 046623 127 MVIMSDV--FYDPE--EMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 127 ~Iv~~~~--~~~~~--~~~~~l~~~~~lL~~gG~~~i 159 (218)
+|++..+ ..... -..++.+.+.++|+|+|.++.
T Consensus 151 vIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~ 187 (274)
T d1iy9a_ 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVA 187 (274)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEE
T ss_pred EEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEE
Confidence 9998422 11111 257899999999999993333
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.37 E-value=4.7e-07 Score=71.55 Aligned_cols=105 Identities=13% Similarity=0.053 Sum_probs=76.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhC---CCCceEEEEeecCCCCccccccCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANG---LGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
...++||-||.|.|.....+.+.. ..+++++|+++ .++.+++.+..+. -.++++++..|...... ...++||
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~---~~~~~yD 164 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR---KFKNEFD 164 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG---GCSSCEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHh---cCCCCCC
Confidence 346799999999999999998764 46899999999 9999888775542 13678999877654432 1456899
Q ss_pred EEEEccc--ccCC---cchHHHHHHHHHHhcCCCceEE
Q 046623 127 MVIMSDV--FYDP---EEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 127 ~Iv~~~~--~~~~---~~~~~~l~~~~~lL~~gG~~~i 159 (218)
+|++... .... --..++++.+.+.|+|+|.+++
T Consensus 165 vIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~ 202 (295)
T d1inla_ 165 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSA 202 (295)
T ss_dssp EEEEEC----------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEE
Confidence 9997422 1111 1247899999999999993333
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.35 E-value=5.9e-07 Score=70.86 Aligned_cols=106 Identities=15% Similarity=0.024 Sum_probs=75.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhC---CCCceEEEEeecCCCCccccccCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANG---LGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
.+.++||=+|.|.|.....+.+. +..+++.+|+++ .++.+++.+..+. -.++++++..|....... ...++||
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~--~~~~~yD 156 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN--AAEGSYD 156 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT--SCTTCEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhh--ccccCcc
Confidence 35679999999999999999876 446899999999 9999988765432 236788888775433211 1345899
Q ss_pred EEEEcccccCCc-----chHHHHHHHHHHhcCCCceEEE
Q 046623 127 MVIMSDVFYDPE-----EMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 127 ~Iv~~~~~~~~~-----~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+|++. .+.... -..++++.+.+.|+|+|.+++.
T Consensus 157 vIi~D-~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 194 (290)
T d1xj5a_ 157 AVIVD-SSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 194 (290)
T ss_dssp EEEEC-CCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEc-CCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence 99973 332111 1367899999999999933333
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=4.5e-07 Score=71.40 Aligned_cols=106 Identities=10% Similarity=-0.025 Sum_probs=75.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhC---CCCceEEEEeecCCCCccccccCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANG---LGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
...++||-+|.|.|..+..+.+. +..+++.+|+++ .++.+++.+..+. -.++++++..|...... ...++||
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~---~~~~~yD 153 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK---QNQDAFD 153 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH---TCSSCEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHh---cCCCCCC
Confidence 35679999999999999999876 457999999999 9999988775421 23678999877544321 1456899
Q ss_pred EEEEcccccCC-----cchHHHHHHHHHHhcCCCceEEEE
Q 046623 127 MVIMSDVFYDP-----EEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 127 ~Iv~~~~~~~~-----~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+|++. .+... --..++++.+.+.|+|||.+++.+
T Consensus 154 vIi~D-~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 154 VIITD-SSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EEEEE-CC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEc-CCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 99984 32211 123568999999999999444433
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.31 E-value=2.6e-06 Score=64.91 Aligned_cols=151 Identities=13% Similarity=0.049 Sum_probs=84.8
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEe
Q 046623 32 GAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVREL 109 (218)
Q Consensus 32 g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~ 109 (218)
+...-.++..|.+........++.+|+|||||.|..+..++.... ..+.+.++-- ..+.-. .....+. +.+++...
T Consensus 45 ~~~~SR~~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~-~~~~~~~-ni~~~~~~ 122 (257)
T d2p41a1 45 HHAVSRGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPI-PMSTYGW-NLVRLQSG 122 (257)
T ss_dssp SCCSSTHHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCSTTG-GGEEEECS
T ss_pred CCCcchHHHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCc-ccccccc-ccccchhh
Confidence 444557888888777665445677999999999999999986532 4677777632 110000 0000010 11333321
Q ss_pred ecCCCCccccccCCCCcEEEEcccccCC------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcE
Q 046623 110 VWGSDDLSQLSELGEFDMVIMSDVFYDP------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFR 183 (218)
Q Consensus 110 d~~~~~~~~~~~~~~~D~Iv~~~~~~~~------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~ 183 (218)
+ . . ...+...+|+|+|.-...+. ...-.+++.+.++|+|||.+++-+..++.+...+.++.+....|=.
T Consensus 123 ~---d-v-~~l~~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~~fgg~ 197 (257)
T d2p41a1 123 V---D-V-FFIPPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHGGA 197 (257)
T ss_dssp C---C-T-TTSCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHHCCE
T ss_pred h---h-H-HhcCCCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHHHhCCe
Confidence 1 1 1 01145789999995322211 1233567777899999995544444443444555566663344445
Q ss_pred EEEEEc
Q 046623 184 VIELTC 189 (218)
Q Consensus 184 ~~~~~~ 189 (218)
..+.|.
T Consensus 198 lVR~P~ 203 (257)
T d2p41a1 198 LVRNPL 203 (257)
T ss_dssp EECCTT
T ss_pred eEcCCC
Confidence 666663
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.27 E-value=6.3e-07 Score=71.19 Aligned_cols=101 Identities=12% Similarity=0.004 Sum_probs=70.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCC---CCceEEEEeecCCCCccccccCCCCcE
Q 046623 53 QNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGL---GGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
..++||-+|.|.|.....+.+.. ..+++.+|+++ .++.+++.+..+.. .++++++..|...... ...++||+
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~---~~~~~yDv 182 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK---NHKNEFDV 182 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH---HCTTCEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHH---hCCCCCCE
Confidence 46799999999999999998764 46999999999 99998887654321 2568888776543321 24578999
Q ss_pred EEEccc--ccCC--cchHHHHHHHHHHhcCCCc
Q 046623 128 VIMSDV--FYDP--EEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 128 Iv~~~~--~~~~--~~~~~~l~~~~~lL~~gG~ 156 (218)
|++... .... --..++++.+.+.|+|+|.
T Consensus 183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi 215 (312)
T d2b2ca1 183 IITDSSDPVGPAESLFGQSYYELLRDALKEDGI 215 (312)
T ss_dssp EEECCC-------------HHHHHHHHEEEEEE
T ss_pred EEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcE
Confidence 998422 1111 1246788999999999993
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.26 E-value=9.1e-07 Score=67.52 Aligned_cols=123 Identities=7% Similarity=-0.020 Sum_probs=73.6
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHH----h-CCCeEEEecCcc-hHHHHHHHHHHhCCCCc
Q 046623 30 LTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAAR----L-GATRVVLTDVKP-LLPGLINNVEANGLGGR 103 (218)
Q Consensus 30 ~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~----~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~ 103 (218)
+-|..+|.....+..+-.-....++++|||+|++.|..++.++. . ..++++++|+++ ........ ..+
T Consensus 57 w~G~p~~k~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~------~~~ 130 (232)
T d2bm8a1 57 WRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD------MEN 130 (232)
T ss_dssp ETTEECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG------CTT
T ss_pred ccceecccCHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhcc------ccc
Confidence 44666676555554442112225678999999999987766542 2 236999999987 43322111 256
Q ss_pred eEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 104 VEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 104 ~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
++++.+|..+...-.......+|.|+..+. |.......-+ ...++|++|| ++++.
T Consensus 131 I~~i~gDs~~~~~~~~l~~~~~dlIfID~~-H~~~~v~~~~-~~~~lLk~GG--~iIve 185 (232)
T d2bm8a1 131 ITLHQGDCSDLTTFEHLREMAHPLIFIDNA-HANTFNIMKW-AVDHLLEEGD--YFIIE 185 (232)
T ss_dssp EEEEECCSSCSGGGGGGSSSCSSEEEEESS-CSSHHHHHHH-HHHHTCCTTC--EEEEC
T ss_pred eeeeecccccHHHHHHHHhcCCCEEEEcCC-cchHHHHHHH-HHhcccCcCC--EEEEE
Confidence 999998876554322224457899988655 3322111112 3568999999 44443
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=6.5e-07 Score=69.19 Aligned_cols=81 Identities=11% Similarity=0.097 Sum_probs=59.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccccc-CCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSE-LGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~D~Iv 129 (218)
.+++.|||||||.|.++..+++.+. +++++|+++ .++.++...... ++++++.+|.......+... .+.--.|+
T Consensus 20 ~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~---~~~~ii~~D~l~~~~~~~~~~~~~~~~vv 95 (252)
T d1qyra_ 20 QKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGELAEKMGQPLRVF 95 (252)
T ss_dssp CTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHHHHHHTSCEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHhhhc---cchhHHhhhhhhhcccccccccCCCeEEE
Confidence 5688999999999999999998765 899999999 888887654332 56999999987765433211 12233666
Q ss_pred EcccccC
Q 046623 130 MSDVFYD 136 (218)
Q Consensus 130 ~~~~~~~ 136 (218)
.|-|++-
T Consensus 96 gNlPY~I 102 (252)
T d1qyra_ 96 GNLPYNI 102 (252)
T ss_dssp EECCTTT
T ss_pred ecchHHH
Confidence 7666543
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.04 E-value=9.1e-06 Score=59.50 Aligned_cols=125 Identities=12% Similarity=0.054 Sum_probs=83.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-cccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-LSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~D~Iv 129 (218)
.++..++|..+|.|..+..+....+ +|+++|.++ +++.+++. ...++.++...+.+..... ....+++|.|+
T Consensus 17 ~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl 90 (182)
T d1wg8a2 17 RPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAALGVERVDGIL 90 (182)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHHTTCSCEEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHHcCCCccCEEE
Confidence 5788999999999999988877654 999999999 98887753 1245888887655432110 11346799999
Q ss_pred EcccccCC---------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEE
Q 046623 130 MSDVFYDP---------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 130 ~~~~~~~~---------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~ 185 (218)
+.--+.+. ......++....++++||.++++.... .....+...+++.++...
T Consensus 91 ~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs---~Ed~ivk~~~~e~~~k~i 152 (182)
T d1wg8a2 91 ADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS---LEDRVVKRFLRESGLKVL 152 (182)
T ss_dssp EECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH---HHHHHHHHHHHHHCSEES
T ss_pred EEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc---chhHHHHHHHhhccceec
Confidence 85433211 224557788889999999555554322 233456666677776654
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.03 E-value=3.7e-05 Score=58.82 Aligned_cols=93 Identities=14% Similarity=0.138 Sum_probs=63.3
Q ss_pred CeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCC--------CCceEEEEeecCCCCccccccCCCC
Q 046623 55 KSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGL--------GGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
.+|||..||.|..+..++..|+ +|+++|.++ ....++.+++.... ..+++++.+|..+.... ..+.|
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~---~~~~~ 165 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD---ITPRP 165 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT---CSSCC
T ss_pred CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhc---cCCCC
Confidence 4899999999999999999986 899999999 77777766654321 13578888775433221 34679
Q ss_pred cEEEEcccccCCc---chHHHHHHHHHHh
Q 046623 126 DMVIMSDVFYDPE---EMVGLGKTLKRVC 151 (218)
Q Consensus 126 D~Iv~~~~~~~~~---~~~~~l~~~~~lL 151 (218)
|+|++.++|.... ...+-++.+..++
T Consensus 166 DvIYlDPMFp~~~Ksa~~kk~m~~l~~l~ 194 (250)
T d2oyra1 166 QVVYLDPMFPHKQKSALVKKEMRVFQSLV 194 (250)
T ss_dssp SEEEECCCCCCCCC-----HHHHHHHHHS
T ss_pred CEEEECCCCccccccccchhHHHHHHhhc
Confidence 9999977764432 2334444444444
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=97.68 E-value=8.7e-05 Score=56.67 Aligned_cols=103 Identities=11% Similarity=-0.028 Sum_probs=71.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-----------------------------------------CeEEEecCcc-hHH
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA-----------------------------------------TRVVLTDVKP-LLP 89 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~-----------------------------------------~~v~~~D~~~-~~~ 89 (218)
..+..++|.-||+|++.++++.... ..+.+.|+++ +++
T Consensus 49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~ 128 (249)
T d1o9ga_ 49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 128 (249)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence 4456799999999999998754210 1346788888 887
Q ss_pred HH---HHHHHHhCCCCceEEEEeecCCCCcc-ccccCCCCcEEEEcccccCCc---------chHHHHHHHHHHhcCC
Q 046623 90 GL---INNVEANGLGGRVEVRELVWGSDDLS-QLSELGEFDMVIMSDVFYDPE---------EMVGLGKTLKRVCGTG 154 (218)
Q Consensus 90 ~a---~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~D~Iv~~~~~~~~~---------~~~~~l~~~~~lL~~g 154 (218)
.+ +.|++..++...+++...|+.+.... ........++|++|+|+...- .+.++...+.+.+...
T Consensus 129 ~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~ 206 (249)
T d1o9ga_ 129 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH 206 (249)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCC
Confidence 77 56888888888899999887654321 122346789999999986531 2455666677667543
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=97.52 E-value=0.0012 Score=51.52 Aligned_cols=136 Identities=10% Similarity=-0.026 Sum_probs=83.9
Q ss_pred eEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccc
Q 046623 56 SVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVF 134 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~ 134 (218)
+|||+.||.|.+++.+.+.|...+.++|+++ +.+..+.|. + -.+...|+.+.... .....|+++.++|+
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~------~-~~~~~~Di~~~~~~---~~~~~dll~~g~PC 71 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH------S-AKLIKGDISKISSD---EFPKCDGIIGGPPC 71 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC------C-SEEEESCTTTSCGG---GSCCCSEEEECCCC
T ss_pred eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC------C-CCCccCChhhCCHh---HcccccEEeecccc
Confidence 7999999999999999888886677999999 888877774 1 35567787766543 33579999999988
Q ss_pred cCC---------c-chHHHHHH---HHHHhcCCCceEEEEEeec------cCChHHHHHHHHHhCCcEEEEEE----ccC
Q 046623 135 YDP---------E-EMVGLGKT---LKRVCGTGRHTVVWAVSEV------RTRTGDCLHELIMSQGFRVIELT----CQL 191 (218)
Q Consensus 135 ~~~---------~-~~~~~l~~---~~~lL~~gG~~~i~~~~~~------~~~~~~~~~~~~~~~gf~~~~~~----~~~ 191 (218)
... . ....++-. +.+.++|. .+++=.... .......+..+ .+.|+.+...- ..-
T Consensus 72 q~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk--~~~lENV~~~~~~~~~~~~~~~l~~l-~~lGY~v~~~vlna~~~G 148 (324)
T d1dcta_ 72 QSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKGMMAQRHNKAVQEFIQEF-DNAGYDVHIILLNANDYG 148 (324)
T ss_dssp TTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCS--EEEEEEEGGGGSGGGHHHHHHHHHHH-HHHHEEEEEEEEEGGGGT
T ss_pred cccccccccccccccccchHHHHHHHHHhhCCc--eeeccccccccccccchhhHHHHhHH-hhCCCccceeeeeccccc
Confidence 532 1 12233322 34466784 344433221 11234444444 66677665542 223
Q ss_pred CCCCCCceeEEEe
Q 046623 192 GGGCPEAFAVYEL 204 (218)
Q Consensus 192 ~~~~~~~~~l~~~ 204 (218)
-+..+++..+.-+
T Consensus 149 vPQ~R~R~fiv~~ 161 (324)
T d1dcta_ 149 VAQDRKRVFYIGF 161 (324)
T ss_dssp CSBCCEEEEEEEE
T ss_pred CchhhceeeEeee
Confidence 3455555555433
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=97.47 E-value=0.00061 Score=53.56 Aligned_cols=73 Identities=15% Similarity=0.016 Sum_probs=55.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
..+.+||||.||.|.++..+.+.|..-+.++|+++ +++..+.|.... ...|+.+.... ....+|+++.
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~--------~~~Di~~~~~~---~~~~~Dll~g 77 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK--------PEGDITQVNEK---TIPDHDILCA 77 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC--------CBSCGGGSCGG---GSCCCSEEEE
T ss_pred CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC--------CcCchhcCchh---hcceeeeeec
Confidence 35679999999999999999888876677899999 999988887321 23555544332 3357999999
Q ss_pred ccccc
Q 046623 131 SDVFY 135 (218)
Q Consensus 131 ~~~~~ 135 (218)
++|+.
T Consensus 78 gpPCq 82 (327)
T d2c7pa1 78 GFPCQ 82 (327)
T ss_dssp ECCCT
T ss_pred ccccc
Confidence 99874
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.0014 Score=51.56 Aligned_cols=125 Identities=18% Similarity=0.097 Sum_probs=74.1
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCC--eEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 54 NKSVLELGAGAGLPGLTAARLGAT--RVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~~~--~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
+.+|+|+.||.|.++..+.+.|.. -+.++|+++ +++..+.|.. ...+...|+.+...... +...+|+++.
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~------~~~~~~~di~~~~~~~~-~~~~~Dll~g 74 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEF-DRLSFDMILM 74 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHH-HHHCCSEEEE
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC------CCCcccCchhhCCHhHc-CCCCccEEEe
Confidence 458999999999999988777753 377999999 8888777742 24455556654443222 2347999999
Q ss_pred cccccCC----------cchHHHHHHHHHHh-----cCCCceEEEEEeec--cCChHHHHHHHHHhCCcEEEEE
Q 046623 131 SDVFYDP----------EEMVGLGKTLKRVC-----GTGRHTVVWAVSEV--RTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 131 ~~~~~~~----------~~~~~~l~~~~~lL-----~~gG~~~i~~~~~~--~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
++|+... +....++-...+++ +| ..+++=.... .....+.+...+++.|+.+...
T Consensus 75 gpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kP--k~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v~~~ 146 (343)
T d1g55a_ 75 SPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLP--KYILLENVKGFEVSSTRDLLIQTIENCGFQYQEF 146 (343)
T ss_dssp CCC------------------CHHHHHHHHGGGCSSCC--SEEEEEEETTGGGSHHHHHHHHHHHHTTEEEEEE
T ss_pred ecccccccccccccccccccccccchhhhhHhhhcCCC--ceeeeeccCCcccchhhHHHHhhhhcccccccee
Confidence 9998532 22334555555554 35 3344422221 1112333444448899887664
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=97.25 E-value=0.0002 Score=54.23 Aligned_cols=56 Identities=20% Similarity=0.160 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHH
Q 046623 40 LILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVE 96 (218)
Q Consensus 40 ~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~ 96 (218)
..|.+.+.+....+|..|||..||+|+.+.++.+.+. +.+++|+++ .++.|++++.
T Consensus 199 ~~L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 199 RDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhCCCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence 3455555443346789999999999999999988875 999999999 9999998864
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.19 E-value=0.0012 Score=52.11 Aligned_cols=58 Identities=16% Similarity=0.090 Sum_probs=46.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
.++.+|||+|+|.|.++..+... .+.+++++|+++ ..+.++..+.. .++.++..|...
T Consensus 42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~----~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG----SPLQILKRDPYD 101 (322)
T ss_dssp TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT----SSCEEECSCTTC
T ss_pred cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC----CCcEEEeCchhh
Confidence 45779999999999999998765 456999999999 88888766532 458888887653
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=97.12 E-value=0.00037 Score=53.40 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=50.6
Q ss_pred ccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh
Q 046623 34 WLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN 98 (218)
Q Consensus 34 ~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~ 98 (218)
|...-...|.+.+......++..|||..+|+|+.++++.+.+. +.+++|+++ ..+.+++++...
T Consensus 188 Hp~~kP~~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 188 HPTQKPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp CTTCCCHHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred CccccchhHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 3334444555555553446889999999999999999999875 999999999 999999998653
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=97.02 E-value=0.00024 Score=55.51 Aligned_cols=57 Identities=19% Similarity=0.273 Sum_probs=45.8
Q ss_pred HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh
Q 046623 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN 98 (218)
Q Consensus 41 ~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~ 98 (218)
.|.+.+......++..|||..||+|+.+.++.+.|. +.+++|+++ +++.+++++...
T Consensus 238 ~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 238 KLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp HHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCS
T ss_pred HHHHHhhhhcccCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHhc
Confidence 444444443345789999999999999999998875 999999999 999998886543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.68 E-value=0.0075 Score=42.45 Aligned_cols=98 Identities=21% Similarity=0.112 Sum_probs=58.8
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc----c--ccC
Q 046623 51 DFQNKSVLELGAG-AGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ----L--SEL 122 (218)
Q Consensus 51 ~~~~~~vLDlG~G-~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~--~~~ 122 (218)
..++.+||=+||| .|..+..+++....+|+++|.++ .++.+++. +.. ..+ ..+-....... . ...
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----ga~--~~~-~~~~~~~~~~~~~~~~~~~~g 96 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GAD--VTL-VVDPAKEEESSIIERIRSAIG 96 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCS--EEE-ECCTTTSCHHHHHHHHHHHSS
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----CCc--EEE-eccccccccchhhhhhhcccc
Confidence 3578899999987 55556656654345999999998 88777653 221 222 22211111111 0 013
Q ss_pred CCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 123 GEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
..+|+|+-.- -....++.+.++++++|+++++.
T Consensus 97 ~g~D~vid~~------g~~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 97 DLPNVTIDCS------GNEKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp SCCSEEEECS------CCHHHHHHHHHHSCTTCEEEECS
T ss_pred cCCceeeecC------CChHHHHHHHHHHhcCCceEEEe
Confidence 5689888421 12467788889999999555443
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.14 E-value=0.017 Score=41.00 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=60.6
Q ss_pred CCCCCeEEEECCCC-CHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc---ccCCC
Q 046623 51 DFQNKSVLELGAGA-GLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL---SELGE 124 (218)
Q Consensus 51 ~~~~~~vLDlG~G~-G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~ 124 (218)
..++.+||=+|||. |..++.++ ..|+..|+.+|.++ .++.+++. |.. .++...-.+...... .....
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~~~~~~G 98 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GAT---DCLNPRELDKPVQDVITELTAGG 98 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHHHHHHTSC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CCC---cccCCccchhhhhhhHhhhhcCC
Confidence 36788999999984 77777776 45667899999999 87776653 322 233211111111111 13467
Q ss_pred CcEEEEcccccCCcchHHHHHHHHHHhcCC-CceEEE
Q 046623 125 FDMVIMSDVFYDPEEMVGLGKTLKRVCGTG-RHTVVW 160 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~g-G~~~i~ 160 (218)
+|+++- +. -....++...++++++ |+++++
T Consensus 99 ~d~vie--~~----G~~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 99 VDYSLD--CA----GTAQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp BSEEEE--SS----CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred CcEEEE--ec----ccchHHHHHHHHhhcCCeEEEec
Confidence 999984 21 1256788888999996 755444
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.95 E-value=0.0045 Score=44.29 Aligned_cols=94 Identities=23% Similarity=0.206 Sum_probs=57.5
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-------ccc
Q 046623 52 FQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-------LSE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~ 121 (218)
.++++||=+|+| .|...+.+++ .|+.+|+++|.++ .++.+++. |.. .++ +..+....+ ...
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi--~~~~~~~~~~~~~i~~~~~ 97 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD---LTL--NRRETSVEERRKAIMDITH 97 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS---EEE--ETTTSCHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cce---EEE--eccccchHHHHHHHHHhhC
Confidence 578999999987 4555666654 4656899999999 88777543 322 222 222222111 012
Q ss_pred CCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 122 LGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 122 ~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
...+|+|+- +... ...++...++++++|+++++
T Consensus 98 ~~g~Dvvid--~vG~----~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 98 GRGADFILE--ATGD----SRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp TSCEEEEEE--CSSC----TTHHHHHHHHEEEEEEEEEC
T ss_pred CCCceEEee--cCCc----hhHHHHHHHHhcCCCEEEEE
Confidence 346898883 2222 34677788999999955444
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.93 E-value=0.004 Score=44.43 Aligned_cols=95 Identities=21% Similarity=0.239 Sum_probs=57.9
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-ccc---ccCC
Q 046623 51 DFQNKSVLELGAGA-GLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQL---SELG 123 (218)
Q Consensus 51 ~~~~~~vLDlG~G~-G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~---~~~~ 123 (218)
..++.+||=+|||. |..++.+++ .|+.+|+++|.++ ..+.+++ .|.. +++. ..+... +.. ....
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~----lGa~---~~i~--~~~~~~~~~v~~~t~g~ 95 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF----YGAT---DILN--YKNGHIEDQVMKLTNGK 95 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH----HTCS---EEEC--GGGSCHHHHHHHHTTTS
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh----hCcc---cccc--ccchhHHHHHHHHhhcc
Confidence 35788898899984 666777664 4556899999998 7777653 3322 2322 122211 111 1224
Q ss_pred CCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 124 EFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.+|+|+-. ... ...++...++++|+|.++++
T Consensus 96 G~D~vid~--~g~----~~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 96 GVDRVIMA--GGG----SETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp CEEEEEEC--SSC----TTHHHHHHHHEEEEEEEEEC
T ss_pred CcceEEEc--cCC----HHHHHHHHHHHhcCCEEEEE
Confidence 59988742 211 35677788999999955444
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.91 E-value=0.02 Score=40.23 Aligned_cols=97 Identities=21% Similarity=0.185 Sum_probs=59.2
Q ss_pred CCCCCeEEEECCCC-CHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc------cc
Q 046623 51 DFQNKSVLELGAGA-GLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL------SE 121 (218)
Q Consensus 51 ~~~~~~vLDlG~G~-G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~------~~ 121 (218)
..++.+||=+|+|. |.....++ ..|+.+|+++|.++ .++.+++. |.. .+... .+...... ..
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~---~~~~~--~~~~~~~~~~~~~~~~ 94 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD---LVLQI--SKESPQEIARKVEGQL 94 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS---EEEEC--SSCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCc---ccccc--cccccccccccccccC
Confidence 35788999999974 44444444 45767899999998 88877543 422 22221 11111100 12
Q ss_pred CCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 122 LGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 122 ~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
...+|+|+-.-. ....++.+.++++++|+++++..
T Consensus 95 g~g~Dvvid~~G------~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 95 GCKPEVTIECTG------AEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp TSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred CCCceEEEeccC------CchhHHHHHHHhcCCCEEEEEec
Confidence 347899885211 25678889999999995555543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.89 E-value=0.002 Score=45.71 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=56.3
Q ss_pred CCCCCeEEEECCC-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 51 DFQNKSVLELGAG-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 51 ~~~~~~vLDlG~G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
..++++||-+|+| .|..+..++ ..|+ +++++|.++ .++.+++. |.. .++... .+... .....+.+|+
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~-~~~~~-~~~~~~~~d~ 94 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----GAD---HYIATL-EEGDW-GEKYFDTFDL 94 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS---EEEEGG-GTSCH-HHHSCSCEEE
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhcc----CCc---EEeecc-chHHH-HHhhhcccce
Confidence 4678899999987 556666665 4565 899999999 88877643 432 222211 11111 1124467998
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
++....-... ..+....++++++|+++++
T Consensus 95 vi~~~~~~~~----~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 95 IVVCASSLTD----IDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp EEECCSCSTT----CCTTTGGGGEEEEEEEEEC
T ss_pred EEEEecCCcc----chHHHHHHHhhccceEEEe
Confidence 8853221111 1134467789999955444
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.052 Score=40.80 Aligned_cols=83 Identities=16% Similarity=0.168 Sum_probs=60.5
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc------ccc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ------LSE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~~ 121 (218)
++++++|=-|+++|. .+..+++.|. +|+.++.++ .++.+.+.+...+...++.++.+|+.+...-+ ...
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~ 86 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 86 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 678899999988774 3444567777 899999999 88888888877765556888899987653111 113
Q ss_pred CCCCcEEEEccccc
Q 046623 122 LGEFDMVIMSDVFY 135 (218)
Q Consensus 122 ~~~~D~Iv~~~~~~ 135 (218)
.++.|+++.+....
T Consensus 87 ~g~iD~lVnnAg~~ 100 (257)
T d1xg5a_ 87 HSGVDICINNAGLA 100 (257)
T ss_dssp HCCCSEEEECCCCC
T ss_pred cCCCCEEEeccccc
Confidence 36899999765443
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.69 E-value=0.011 Score=41.85 Aligned_cols=95 Identities=22% Similarity=0.156 Sum_probs=59.0
Q ss_pred CCCCCeEEEECCC-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c--ccCCC
Q 046623 51 DFQNKSVLELGAG-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L--SELGE 124 (218)
Q Consensus 51 ~~~~~~vLDlG~G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~--~~~~~ 124 (218)
..++.+||=+||| .|..+..++ ..|...++.+|.++ .++.+++. |. .+++. ..+....+ . ...+.
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga---~~~i~--~~~~~~~~~i~~~t~gg 96 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA---THVIN--SKTQDPVAAIKEITDGG 96 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC---SEEEE--TTTSCHHHHHHHHTTSC
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CC---eEEEe--CCCcCHHHHHHHHcCCC
Confidence 3678899999987 334444554 55777888999988 77777643 32 23332 22222111 1 12457
Q ss_pred CcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 125 FDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+|+|+-. . -..+.++...++++++|+++++
T Consensus 97 ~D~vid~--~----G~~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 97 VNFALES--T----GSPEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp EEEEEEC--S----CCHHHHHHHHHTEEEEEEEEEC
T ss_pred CcEEEEc--C----CcHHHHHHHHhcccCceEEEEE
Confidence 9998842 1 1256778889999999955544
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.24 E-value=0.01 Score=42.33 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=33.6
Q ss_pred CCCCCeEEEECCC-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHH
Q 046623 51 DFQNKSVLELGAG-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINN 94 (218)
Q Consensus 51 ~~~~~~vLDlG~G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~ 94 (218)
..++++|+=+|+| .|..++.++ ..|+.+|+++|.++ .++.+++.
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~ 73 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV 73 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence 4678899999998 444555555 45667999999999 99887755
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.16 E-value=0.013 Score=40.95 Aligned_cols=94 Identities=16% Similarity=0.086 Sum_probs=53.9
Q ss_pred CCCCeEEEECCC-CCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-ccCCCCcE
Q 046623 52 FQNKSVLELGAG-AGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-SELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-~~~~~~D~ 127 (218)
.++++||=+|+| .|.....+++....+|+++|.++ .++.+++ .|.. .++. ..+....+ . .....+|.
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~----~Ga~---~~i~--~~~~~~~~~~~~~~~g~~~ 96 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARK----LGAS---LTVN--ARQEDPVEAIQRDIGGAHG 96 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS---EEEE--TTTSCHHHHHHHHHSSEEE
T ss_pred CCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhc----cCcc---cccc--ccchhHHHHHHHhhcCCcc
Confidence 567888889987 45555555654345999999998 7776653 3422 2332 22222111 1 11233444
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
++.... ....++...++++++|+++++
T Consensus 97 ~i~~~~------~~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 97 VLVTAV------SNSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp EEECCS------CHHHHHHHHTTEEEEEEEEEC
T ss_pred cccccc------cchHHHHHHHHhcCCcEEEEE
Confidence 443111 135677788999999955544
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=95.14 E-value=0.016 Score=44.15 Aligned_cols=144 Identities=15% Similarity=0.151 Sum_probs=95.5
Q ss_pred EECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC
Q 046623 59 ELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP 137 (218)
Q Consensus 59 DlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~ 137 (218)
.+-+||-.++..+.+. ..+.+.+|.-+ -.+.+++++... .++.+...|-.........+.++--+|++.+++...
T Consensus 88 ~~YPGSP~ia~~llR~-~Drl~l~ELHp~e~~~L~~~~~~~---~~~~v~~~DG~~~l~allPP~~rRgLVLIDPpYE~k 163 (271)
T d2oo3a1 88 SYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHFN---KKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERK 163 (271)
T ss_dssp CEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCTT---SCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCST
T ss_pred CcCCCCHHHHHHhCCC-CCceEEeecCHHHHHHHHHHhccC---CCceEEcCchHHHHHhhCCCCCCceEEEecCCcCCH
Confidence 4556655555555444 35899999999 888887776432 457777655433322223355666799998888888
Q ss_pred cchHHHHHHHHHHhc--CCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCC---CCCCceeEEEecCC
Q 046623 138 EEMVGLGKTLKRVCG--TGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGG---GCPEAFAVYELIPP 207 (218)
Q Consensus 138 ~~~~~~l~~~~~lL~--~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~---~~~~~~~l~~~~~~ 207 (218)
+++..+.+.+.+.++ |.|..++|-....+.....+.+.+ .+.+.....+.....+ .....-=++.+.+|
T Consensus 164 ~ey~~v~~~l~~a~kr~~~g~~~iWYPi~~~~~~~~~~~~l-~~~~~k~l~~El~~~~~~~~gm~GSGm~iiNPP 237 (271)
T d2oo3a1 164 EEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKM-REISSKSVRIELHLNPLINEGMTGCGLWIINPP 237 (271)
T ss_dssp THHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHH-HHHCSSEEEEEEECCCSSCCSCCEEEEEEESCC
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEeeccCcHHHHHHHHHH-HhcCccceeEEEeeCCCCCCCcceeEEEEECCC
Confidence 899999999988887 688888887777777777777777 6667665555333222 12333445666666
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.11 E-value=0.08 Score=37.23 Aligned_cols=97 Identities=15% Similarity=0.145 Sum_probs=56.4
Q ss_pred CCCCCeEEEECCCC-CHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc---ccCCC
Q 046623 51 DFQNKSVLELGAGA-GLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL---SELGE 124 (218)
Q Consensus 51 ~~~~~~vLDlG~G~-G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~ 124 (218)
..++++||=+|||. |..++.++ ..|+.+|+++|.++ .++.+++. |. ..++.-.-.+...... .....
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l----Ga---~~~i~~~~~d~~~~~~~~~~~~~G 97 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GA---TECLNPKDYDKPIYEVICEKTNGG 97 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TC---SEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc----CC---cEEEcCCCchhHHHHHHHHhcCCC
Confidence 46788999999983 34445444 56778999999999 88887653 43 2333211112111111 12357
Q ss_pred CcEEEEcccccCCcchHHHHHHHHHHhcC-CCceEEE
Q 046623 125 FDMVIMSDVFYDPEEMVGLGKTLKRVCGT-GRHTVVW 160 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~-gG~~~i~ 160 (218)
+|+++-. . .....+......+++ +|.++++
T Consensus 98 ~d~vid~--~----g~~~~~~~~~~~~~~~~G~~v~v 128 (174)
T d1p0fa2 98 VDYAVEC--A----GRIETMMNALQSTYCGSGVTVVL 128 (174)
T ss_dssp BSEEEEC--S----CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred CcEEEEc--C----CCchHHHHHHHHHHHhcCceEEE
Confidence 9998852 1 124555666666655 5744444
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.00 E-value=0.14 Score=35.56 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=58.6
Q ss_pred CCCCCeEEEECCC-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc---ccCCC
Q 046623 51 DFQNKSVLELGAG-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL---SELGE 124 (218)
Q Consensus 51 ~~~~~~vLDlG~G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~ 124 (218)
..++.+||=.||| .|..++.++ ..|+..|+++|.++ ..+.+++. |.. +++..+-........ .....
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga~---~~i~~~~~~~~~~~~~~~~~~~g 98 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT---ECINPQDFSKPIQEVLIEMTDGG 98 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CCc---EEEeCCchhhHHHHHHHHHcCCC
Confidence 3678899999987 334555554 56778999999998 87776643 422 333211111111111 12357
Q ss_pred CcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 125 FDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+|+|+-.- . ....++.+..++++||..+++
T Consensus 99 ~D~vid~~--G----~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 99 VDYSFECI--G----NVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp BSEEEECS--C----CHHHHHHHHHTBCTTTCEEEE
T ss_pred CcEeeecC--C----CHHHHHHHHHhhcCCceeEEE
Confidence 99998521 1 246777888889988755544
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.77 E-value=0.0059 Score=43.29 Aligned_cols=93 Identities=20% Similarity=0.099 Sum_probs=57.3
Q ss_pred CCCCeEEEECC--CCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c---ccCCC
Q 046623 52 FQNKSVLELGA--GAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L---SELGE 124 (218)
Q Consensus 52 ~~~~~vLDlG~--G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~---~~~~~ 124 (218)
.++.+||=.|+ |.|..++.+++.-..++++++.++ ..+.+++ .|.. .++ |..+....+ . .....
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~---~vi--~~~~~~~~~~i~~~t~~~g 97 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAH---EVF--NHREVNYIDKIKKYVGEKG 97 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEE--ETTSTTHHHHHHHHHCTTC
T ss_pred CCCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCcc---ccc--ccccccHHHHhhhhhccCC
Confidence 57889999996 255666666655444899988777 6666543 3432 222 333322111 1 13456
Q ss_pred CcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 125 FDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+|+|+-.. -.+.++...++++|+|+++.+
T Consensus 98 ~d~v~d~~-------g~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 98 IDIIIEML-------ANVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp EEEEEESC-------HHHHHHHHHHHEEEEEEEEEC
T ss_pred ceEEeecc-------cHHHHHHHHhccCCCCEEEEE
Confidence 99988622 145678888999999955554
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=94.47 E-value=0.093 Score=41.52 Aligned_cols=44 Identities=25% Similarity=0.292 Sum_probs=31.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh--------CCCeEEEecCcc-hHHHHHHHH
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL--------GATRVVLTDVKP-LLPGLINNV 95 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~--------~~~~v~~~D~~~-~~~~a~~~~ 95 (218)
.+...|+|+|+|+|.++..+.+. ...+++.+|.++ ..+..++++
T Consensus 78 ~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l 130 (365)
T d1zkda1 78 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL 130 (365)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred CccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHh
Confidence 34558999999999998876332 123689999999 555555444
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.26 E-value=0.044 Score=38.02 Aligned_cols=95 Identities=17% Similarity=0.100 Sum_probs=54.8
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-ccCCCCc
Q 046623 51 DFQNKSVLELGAGA-GLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-SELGEFD 126 (218)
Q Consensus 51 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-~~~~~~D 126 (218)
..++++||=.|+|+ |...+.+++....+|++++.++ .++.+++ .|.. .++ +..+..... . .....+|
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~----~Ga~---~~~--~~~~~~~~~~~~~~~~~~~ 95 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGAD---LVV--NPLKEDAAKFMKEKVGGVH 95 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS---EEE--CTTTSCHHHHHHHHHSSEE
T ss_pred CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh----cCcc---eec--ccccchhhhhcccccCCCc
Confidence 35788999999884 4445555655445899999988 7776654 3422 121 222222111 1 1123344
Q ss_pred EEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.++.... ....+....++++++|.++++
T Consensus 96 ~~v~~~~------~~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 96 AAVVTAV------SKPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp EEEESSC------CHHHHHHHHHHEEEEEEEEEC
T ss_pred eEEeecC------CHHHHHHHHHHhccCCceEec
Confidence 4443222 256788899999999954444
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.69 E-value=0.034 Score=39.03 Aligned_cols=94 Identities=15% Similarity=0.098 Sum_probs=57.8
Q ss_pred CCCCeEEEECCCC-CHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc---ccCCCC
Q 046623 52 FQNKSVLELGAGA-GLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL---SELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G~-G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~ 125 (218)
.++.+||=+|+|. |..+..++ ..|+..++.+|.++ .++.+++. +. .+++. ..+...... .....+
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga---~~~i~--~~~~~~~~~~~~~~~~g~ 101 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GA---DHVVD--ARRDPVKQVMELTRGRGV 101 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TC---SEEEE--TTSCHHHHHHHHTTTCCE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----cc---ceeec--CcccHHHHHHHhhCCCCc
Confidence 5788999999873 44445554 56777899999998 77776643 32 23332 222222111 122468
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|+|+-. . -....++...++++++|+++++
T Consensus 102 d~vid~--~----g~~~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 102 NVAMDF--V----GSQATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp EEEEES--S----CCHHHHHHGGGGEEEEEEEEEC
T ss_pred eEEEEe--c----CcchHHHHHHHHHhCCCEEEEE
Confidence 888842 1 1245678888899999955554
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.66 E-value=0.31 Score=33.56 Aligned_cols=103 Identities=18% Similarity=0.226 Sum_probs=59.8
Q ss_pred eEEEECCCC--CHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 56 SVLELGAGA--GLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 56 ~vLDlG~G~--G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
+|+=+|||. |.++..+.+.+. .+|+++|.++ .++.+++. +. +.....+... . .....|+|+..
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~---~~~~~~~~~~--~----~~~~~dlIila 69 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI---IDEGTTSIAK--V----EDFSPDFVMLS 69 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS---CSEEESCGGG--G----GGTCCSEEEEC
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc---chhhhhhhhh--h----hcccccccccc
Confidence 577789883 234555556654 4899999998 88777654 21 2222111111 1 23468999976
Q ss_pred ccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHH
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHEL 176 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~ 176 (218)
-+. .....+++.+...++++. ++.-.........+.+...
T Consensus 70 ~p~---~~~~~vl~~l~~~~~~~~--ii~d~~s~k~~~~~~~~~~ 109 (171)
T d2g5ca2 70 SPV---RTFREIAKKLSYILSEDA--TVTDQGSVKGKLVYDLENI 109 (171)
T ss_dssp SCH---HHHHHHHHHHHHHSCTTC--EEEECCSCCTHHHHHHHHH
T ss_pred CCc---hhhhhhhhhhhccccccc--cccccccccHHHHHHHHHh
Confidence 553 446778888888898876 4433333333344444443
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=93.51 E-value=0.086 Score=41.67 Aligned_cols=107 Identities=15% Similarity=0.093 Sum_probs=64.3
Q ss_pred CeEEEECCCCCHHHHHH-------H-Hh------C---CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc
Q 046623 55 KSVLELGAGAGLPGLTA-------A-RL------G---ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL 116 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l-------~-~~------~---~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 116 (218)
-+|.|+||.+|..++.+ . +. . .-+|..-|... -...+-+.+....-.....|+.+-.... .
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSF-Y 131 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF-Y 131 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS-S
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCch-h
Confidence 57999999999766432 1 10 1 13788899887 6655555543322111122332211211 2
Q ss_pred cccccCCCCcEEEEcccccCCc---------------------------------chHHHHHHHHHHhcCCCceEEEEE
Q 046623 117 SQLSELGEFDMVIMSDVFYDPE---------------------------------EMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 117 ~~~~~~~~~D~Iv~~~~~~~~~---------------------------------~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
....|.++.|+++++..+|+.. |...+|+.-++=|+|||++++...
T Consensus 132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 2334889999999888777531 245577777888899996665543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=93.36 E-value=0.035 Score=39.07 Aligned_cols=94 Identities=23% Similarity=0.253 Sum_probs=58.1
Q ss_pred CCCCeEEEECCC-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAG-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|+=||+| .|..++..+ ..|+ +|+.+|.++ .++..+.....+ ++....+ +.... ..-...|+|
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~~-----~~~~~~~--~~~l~--~~~~~aDiv 99 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSR-----VELLYSN--SAEIE--TAVAEADLL 99 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGG-----SEEEECC--HHHHH--HHHHTCSEE
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhccc-----ceeehhh--hhhHH--HhhccCcEE
Confidence 357899999999 666677666 4555 999999999 888777665332 3443211 11111 123468999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
+..--..-...+.=+-+...+.+|||.
T Consensus 100 I~aalipG~~aP~lIt~~mv~~Mk~GS 126 (168)
T d1pjca1 100 IGAVLVPGRRAPILVPASLVEQMRTGS 126 (168)
T ss_dssp EECCCCTTSSCCCCBCHHHHTTSCTTC
T ss_pred EEeeecCCcccCeeecHHHHhhcCCCc
Confidence 974332222223334466777889988
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.07 E-value=0.38 Score=35.52 Aligned_cols=81 Identities=20% Similarity=0.289 Sum_probs=59.9
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-----c-cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-----L-SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~-~~ 121 (218)
..|+++|=-|++.|. ++..+++.|. +|+.+|.++ .++.+.+.+...+ .++..+.+|+.+...-. . ..
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~ 81 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAE 81 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 578888888888874 4555677787 899999999 8888888887766 45888999988764211 1 24
Q ss_pred CCCCcEEEEccccc
Q 046623 122 LGEFDMVIMSDVFY 135 (218)
Q Consensus 122 ~~~~D~Iv~~~~~~ 135 (218)
.+..|+++.+....
T Consensus 82 ~g~idilinnag~~ 95 (244)
T d1yb1a_ 82 IGDVSILVNNAGVV 95 (244)
T ss_dssp TCCCSEEEECCCCC
T ss_pred cCCCceeEeecccc
Confidence 57899999776554
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=92.90 E-value=0.13 Score=35.67 Aligned_cols=94 Identities=17% Similarity=0.087 Sum_probs=54.2
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 51 DFQNKSVLELGAG-AGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 51 ~~~~~~vLDlG~G-~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
..++++||=+|+| .|..++.+++.-..+++.+|.++ ..+.+++ .|.. .++ |..+... .......+|++
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~----lGad---~~i--~~~~~~~-~~~~~~~~D~v 97 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----LGAD---EVV--NSRNADE-MAAHLKSFDFI 97 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTCS---EEE--ETTCHHH-HHTTTTCEEEE
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhc----cCCc---EEE--ECchhhH-HHHhcCCCcee
Confidence 4678899989986 45556666654334778889888 7666553 3422 222 2222211 11234579988
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+-. ... ...++...++++++|+++++
T Consensus 98 id~--~g~----~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 98 LNT--VAA----PHNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp EEC--CSS----CCCHHHHHTTEEEEEEEEEC
T ss_pred eee--eec----chhHHHHHHHHhcCCEEEEe
Confidence 842 111 22355667799999955544
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.63 E-value=0.65 Score=34.58 Aligned_cols=107 Identities=15% Similarity=0.227 Sum_probs=69.0
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc--hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-c-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP--LLPGLINNVEANGLGGRVEVRELVWGSDDLS-Q-----LS 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~-----~~ 120 (218)
++++++|=-|++.|. ++..+++.|+ +|+.++.+. .++.+.+.++..+. .+.+..+|+.+...- . ..
T Consensus 16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~ 92 (272)
T d1g0oa_ 16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVK 92 (272)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHHH
Confidence 678888888887774 4455567776 899988775 66777777777764 488888888764311 1 11
Q ss_pred cCCCCcEEEEcccccCCcc-------------------hHHHHHHHHHHhcCCCceEEEE
Q 046623 121 ELGEFDMVIMSDVFYDPEE-------------------MVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~~~-------------------~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
..++.|+++.+........ .-.+.+.+.+.|+.+|..+++.
T Consensus 93 ~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 93 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred HhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 3368999997654432211 2334556667778888555553
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=92.48 E-value=0.16 Score=35.77 Aligned_cols=131 Identities=15% Similarity=0.118 Sum_probs=68.6
Q ss_pred CCCCCCCeEEEECCCCCHHHH--HHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCC
Q 046623 49 HFDFQNKSVLELGAGAGLPGL--TAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~--~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
..+.++++||=+|||.-.-++ .+.+.+..+++.++.++ ..+.+...++..+..........++.+...- ......+
T Consensus 13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 91 (182)
T d1vi2a1 13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAF-AEALASA 91 (182)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHH-HHHHHTC
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccch-hhhhccc
Confidence 335678999999998322222 33566778899999887 6666554433221111133444555443210 0122578
Q ss_pred cEEEEcccccCCcc-hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEE
Q 046623 126 DMVIMSDVFYDPEE-MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 126 D~Iv~~~~~~~~~~-~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~ 185 (218)
|+|+-..+...... .+.+... ...+++++ +++ ...+.+....+++.. +..|+...
T Consensus 92 diiIN~Tp~G~~~~~~~~~~~~-~~~~~~~~--~v~-Di~Y~p~~T~ll~~a-~~~g~~~i 147 (182)
T d1vi2a1 92 DILTNGTKVGMKPLENESLVND-ISLLHPGL--LVT-ECVYNPHMTKLLQQA-QQAGCKTI 147 (182)
T ss_dssp SEEEECSSTTSTTSCSCCSCCC-GGGSCTTC--EEE-ECCCSSSSCHHHHHH-HTTTCEEE
T ss_pred ceeccccCCccccccchhhhhH-HHhhhcch--hhH-HhhcCccccHHHHHH-HHCcCeEe
Confidence 99997665542211 0111000 12356655 222 223334455667776 77787664
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.35 E-value=0.22 Score=37.00 Aligned_cols=87 Identities=14% Similarity=0.086 Sum_probs=56.9
Q ss_pred CCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----ccC
Q 046623 53 QNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----SEL 122 (218)
Q Consensus 53 ~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~~ 122 (218)
.|+++|=-|++.|. .+..+++.|+ +|+.+|.++ .++.+.+.+....-..++.++.+|+.+...- .. ...
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 46778888877663 3444567776 899999998 7777666654433234578888998765311 11 123
Q ss_pred CCCcEEEEcccccCCcch
Q 046623 123 GEFDMVIMSDVFYDPEEM 140 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~~ 140 (218)
++.|+++.+.......+.
T Consensus 81 G~iDilVnnAg~~~~~~~ 98 (254)
T d2gdza1 81 GRLDILVNNAGVNNEKNW 98 (254)
T ss_dssp SCCCEEEECCCCCCSSSH
T ss_pred CCcCeecccccccccccc
Confidence 689999987666554443
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=92.35 E-value=0.91 Score=31.21 Aligned_cols=98 Identities=15% Similarity=0.083 Sum_probs=56.8
Q ss_pred CCCCCeEEEECCCCC-HHHHHH-HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc---cccCCC
Q 046623 51 DFQNKSVLELGAGAG-LPGLTA-ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ---LSELGE 124 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G-~~~~~l-~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~ 124 (218)
..++++||=+|+|.+ .....+ +..++.+|+++|.++ ..+.+++. +. .+++.-.-.+..... ....+.
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----Ga---~~~i~~~~~~~~~~~~~~~~~~~G 98 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GA---TECVNPQDYKKPIQEVLTEMSNGG 98 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC---SEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----CC---eeEEecCCchhHHHHHHHHHhcCC
Confidence 367889999999743 333333 456777999999999 88777654 32 222221001111111 113357
Q ss_pred CcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 125 FDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+|+++-... ....++....+++++|..+++.
T Consensus 99 ~D~vid~~G------~~~~~~~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 99 VDFSFEVIG------RLDTMVTALSCCQEAYGVSVIV 129 (176)
T ss_dssp BSEEEECSC------CHHHHHHHHHHBCTTTCEEEEC
T ss_pred CCEEEecCC------chhHHHHHHHHHhcCCcceEEe
Confidence 998885221 2456677777888875455443
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=92.15 E-value=0.7 Score=31.75 Aligned_cols=97 Identities=20% Similarity=0.173 Sum_probs=56.4
Q ss_pred CCCCCeEEEECCCCCHH-HHHH-HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc---ccCCC
Q 046623 51 DFQNKSVLELGAGAGLP-GLTA-ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL---SELGE 124 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~-~~~l-~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~ 124 (218)
..++++||=+|+|.+.. +..+ +..++..|+++|.++ .++.+++ .|.. +++.-.-.+...... .....
T Consensus 26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~----~GAd---~~in~~~~~~~~~~~~~~~~~~G 98 (175)
T d1cdoa2 26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT---DFVNPNDHSEPISQVLSKMTNGG 98 (175)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC---EEECGGGCSSCHHHHHHHHHTSC
T ss_pred CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH----cCCc---EEEcCCCcchhHHHHHHhhccCC
Confidence 36788999999987544 3333 466777999999999 8877654 3432 333211111111111 12357
Q ss_pred CcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 125 FDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+|+++-.-- ....+.....+++++|..+++
T Consensus 99 ~d~vid~~G------~~~~~~~a~~~~~~g~~~~~~ 128 (175)
T d1cdoa2 99 VDFSLECVG------NVGVMRNALESCLKGWGVSVL 128 (175)
T ss_dssp BSEEEECSC------CHHHHHHHHHTBCTTTCEEEE
T ss_pred cceeeeecC------CHHHHHHHHHHhhCCCcceeE
Confidence 899985211 245566677777776644444
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=91.85 E-value=0.11 Score=37.18 Aligned_cols=101 Identities=24% Similarity=0.237 Sum_probs=61.3
Q ss_pred CCCCCeEEEECCCC-CHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc---ccCC
Q 046623 51 DFQNKSVLELGAGA-GLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL---SELG 123 (218)
Q Consensus 51 ~~~~~~vLDlG~G~-G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~---~~~~ 123 (218)
..++.+||-+|||. |..+..++ ..++.+|+.+|.++ .++.+++. | .+... +..+.... .. -...
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----G----a~~~~-~~~~~~~~~~i~~~t~g~ 93 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----G----FEIAD-LSLDTPLHEQIAALLGEP 93 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T----CEEEE-TTSSSCHHHHHHHHHSSS
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----c----ccEEE-eCCCcCHHHHHHHHhCCC
Confidence 36788999999985 55555555 45777999999998 88877654 3 22222 11111111 11 1234
Q ss_pred CCcEEEEccccc---------CCcchHHHHHHHHHHhcCCCceEEE
Q 046623 124 EFDMVIMSDVFY---------DPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 124 ~~D~Iv~~~~~~---------~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.+|+++-.--.. ........++...++++|+|++.++
T Consensus 94 g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 94 EVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp CEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 689888321100 1122457899999999999955544
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=91.77 E-value=0.24 Score=36.89 Aligned_cols=80 Identities=26% Similarity=0.395 Sum_probs=55.0
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-cc-----ccc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQ-----LSE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~-----~~~ 121 (218)
++++++|=-|++.|. .+..+++.|+ +|+.++.++ .++.+.+.++..+ .++.++.+|+.+... .. ...
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~ 85 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 678888877766653 3334456676 899999998 8888888777766 448888899876531 11 112
Q ss_pred CCCCcEEEEcccc
Q 046623 122 LGEFDMVIMSDVF 134 (218)
Q Consensus 122 ~~~~D~Iv~~~~~ 134 (218)
.++.|+++.+.-.
T Consensus 86 ~g~iDilvnnAG~ 98 (255)
T d1fmca_ 86 LGKVDILVNNAGG 98 (255)
T ss_dssp HSSCCEEEECCCC
T ss_pred cCCCCEeeeCCcC
Confidence 3689999976543
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=91.52 E-value=0.21 Score=36.67 Aligned_cols=63 Identities=5% Similarity=0.044 Sum_probs=39.8
Q ss_pred cCCCCcEEEEcccccCC-------c-------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEE
Q 046623 121 ELGEFDMVIMSDVFYDP-------E-------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIE 186 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~-------~-------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~ 186 (218)
+.+++|+|+.++|+... . .+...++.+.++|+|+|.++++.. ......+...+.+.||....
T Consensus 20 pd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~----~~~~~~~~~~~~~~g~~~~~ 95 (256)
T d1g60a_ 20 ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT----PFNCAFICQYLVSKGMIFQN 95 (256)
T ss_dssp CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC----HHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccC----chhhhhhhhhhhcccceeee
Confidence 66889999998886421 1 144577788999999994333322 11222333334788998766
Q ss_pred E
Q 046623 187 L 187 (218)
Q Consensus 187 ~ 187 (218)
.
T Consensus 96 ~ 96 (256)
T d1g60a_ 96 W 96 (256)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=91.50 E-value=0.32 Score=36.04 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=55.5
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc------ccc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ------LSE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~~ 121 (218)
++++.+|=-|++.|. .+..+++.|+ +|+.+|.++ .++.+.+.++..+ .++..+.+|+.+...-. ...
T Consensus 8 lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~ 84 (251)
T d2c07a1 8 GENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTE 84 (251)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHh
Confidence 577788888876662 2333455565 899999998 8888888877766 34888889987653111 123
Q ss_pred CCCCcEEEEcccc
Q 046623 122 LGEFDMVIMSDVF 134 (218)
Q Consensus 122 ~~~~D~Iv~~~~~ 134 (218)
.++.|+++.+...
T Consensus 85 ~g~iDilvnnag~ 97 (251)
T d2c07a1 85 HKNVDILVNNAGI 97 (251)
T ss_dssp CSCCCEEEECCCC
T ss_pred cCCceeeeecccc
Confidence 4789999976554
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=91.41 E-value=0.78 Score=32.21 Aligned_cols=80 Identities=18% Similarity=0.110 Sum_probs=53.0
Q ss_pred CCCCCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCC
Q 046623 49 HFDFQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGE 124 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 124 (218)
..+.+++++|=.|++.|. ++..+++.|. +|+.++.++ ..+.+.+.+..+. .+.+..+|..+...- ....+.
T Consensus 18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~-~~~~~~ 92 (191)
T d1luaa1 18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASR-AEAVKG 92 (191)
T ss_dssp TSCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHH-HHHTTT
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHH-HHHhcC
Confidence 346889999999977663 3445567776 899999998 7777776665542 245566666543211 113467
Q ss_pred CcEEEEccc
Q 046623 125 FDMVIMSDV 133 (218)
Q Consensus 125 ~D~Iv~~~~ 133 (218)
.|+++.+..
T Consensus 93 iDilin~Ag 101 (191)
T d1luaa1 93 AHFVFTAGA 101 (191)
T ss_dssp CSEEEECCC
T ss_pred cCeeeecCc
Confidence 899987644
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=91.34 E-value=0.45 Score=32.55 Aligned_cols=81 Identities=10% Similarity=0.034 Sum_probs=48.8
Q ss_pred eEEEECCCC--CHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 56 SVLELGAGA--GLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 56 ~vLDlG~G~--G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
+|.=||+|. +.++..+.+.|. +|++.|.++ .++.+++. +. +.... .... .....|+|+..-
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~----~~---~~~~~---~~~~-----~~~~~DiIilav 65 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVER----QL---VDEAG---QDLS-----LLQTAKIIFLCT 65 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT----TS---CSEEE---SCGG-----GGTTCSEEEECS
T ss_pred EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHh----hc---cceee---eecc-----cccccccccccC
Confidence 455577762 234445556665 899999998 77765542 22 11111 1111 235689999754
Q ss_pred cccCCcchHHHHHHHHHHhcCCC
Q 046623 133 VFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 133 ~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
|. ...+++++.+...++++.
T Consensus 66 p~---~~~~~vl~~l~~~l~~~~ 85 (165)
T d2f1ka2 66 PI---QLILPTLEKLIPHLSPTA 85 (165)
T ss_dssp CH---HHHHHHHHHHGGGSCTTC
T ss_pred cH---hhhhhhhhhhhhhccccc
Confidence 42 456778888888888876
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=91.27 E-value=0.21 Score=39.91 Aligned_cols=48 Identities=17% Similarity=0.091 Sum_probs=39.5
Q ss_pred CCCeEEEECCCCCHHHHHHHH-hC--CCeEEEecCcc-hHHHHHHHHHHhCC
Q 046623 53 QNKSVLELGAGAGLPGLTAAR-LG--ATRVVLTDVKP-LLPGLINNVEANGL 100 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~-~~--~~~v~~~D~~~-~~~~a~~~~~~~~~ 100 (218)
++..++|+||-.|..+..+++ .. ..+|+++|+++ ..+.+++|++.+..
T Consensus 212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~ 263 (395)
T d2py6a1 212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD 263 (395)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence 567899999999998887643 32 25899999999 99999999987754
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=90.52 E-value=2.3 Score=31.06 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=54.6
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHH-HHhCCCCceEEEEeecCCCCcc-cc-----
Q 046623 51 DFQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNV-EANGLGGRVEVRELVWGSDDLS-QL----- 119 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~-~~~~~~~~~~~~~~d~~~~~~~-~~----- 119 (218)
+++++++|=-|++.|. .+..+++.|+ +|+.+|.++ .++.+.+.+ +..+ .++..+.+|+.+...- ..
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVK 78 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHH
Confidence 3678899999988773 4445577787 899999998 666655544 4445 3477888898765311 11
Q ss_pred ccCCCCcEEEEcccc
Q 046623 120 SELGEFDMVIMSDVF 134 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~ 134 (218)
...++.|+++.+.-.
T Consensus 79 ~~~g~iDiLVnnAG~ 93 (251)
T d1vl8a_ 79 EKFGKLDTVVNAAGI 93 (251)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHcCCCCEEEECCCC
Confidence 123689999976543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.30 E-value=0.58 Score=34.37 Aligned_cols=76 Identities=24% Similarity=0.337 Sum_probs=51.4
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-c-cccCCCC
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-Q-LSELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~~~~ 125 (218)
++|+++|=-|+++|. .+..+++.|+ +|+.+|.++ .++.+.+.. ..+..+.+|+.+...- . +...++.
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~g~i 77 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGSVGPV 77 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHhCCc
Confidence 678999999988773 4445567777 899999998 666554332 2367778888765311 1 1244789
Q ss_pred cEEEEcccc
Q 046623 126 DMVIMSDVF 134 (218)
Q Consensus 126 D~Iv~~~~~ 134 (218)
|+++.+...
T Consensus 78 DilVnnAg~ 86 (244)
T d1pr9a_ 78 DLLVNNAAV 86 (244)
T ss_dssp CEEEECCCC
T ss_pred eEEEecccc
Confidence 999976544
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=90.29 E-value=0.61 Score=34.62 Aligned_cols=81 Identities=22% Similarity=0.249 Sum_probs=57.2
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~ 121 (218)
++++++|=-|++.|. .+..+++.|+ +|..+|.++ .++.+.+.+...+...++..+.+|+.+...- .. ..
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 567888888888774 4555677787 899999999 8887777766655445678888898765321 11 12
Q ss_pred CCCCcEEEEccc
Q 046623 122 LGEFDMVIMSDV 133 (218)
Q Consensus 122 ~~~~D~Iv~~~~ 133 (218)
.++.|+++.|.-
T Consensus 81 ~G~iDiLVnnAG 92 (258)
T d1iy8a_ 81 FGRIDGFFNNAG 92 (258)
T ss_dssp HSCCSEEEECCC
T ss_pred hCCCCEEEECCc
Confidence 368999997643
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.24 E-value=0.65 Score=34.28 Aligned_cols=75 Identities=23% Similarity=0.213 Sum_probs=50.6
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~ 121 (218)
++++++|=-|+++|. .+..+++.|+ +|+.+|.++ .++.+.+.. ....++.+|+.+...- .. ..
T Consensus 4 l~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~~~~~ 76 (250)
T d1ydea1 4 YAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIRR 76 (250)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHHHHHHHHHHHHh
Confidence 678899999987773 3445567777 899999998 766654432 2377888888765311 11 12
Q ss_pred CCCCcEEEEccc
Q 046623 122 LGEFDMVIMSDV 133 (218)
Q Consensus 122 ~~~~D~Iv~~~~ 133 (218)
.++.|+++.+.-
T Consensus 77 ~g~iDilVnnAG 88 (250)
T d1ydea1 77 FGRLDCVVNNAG 88 (250)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCCCEEEeccc
Confidence 368999997654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=90.22 E-value=0.64 Score=34.48 Aligned_cols=81 Identities=20% Similarity=0.174 Sum_probs=57.2
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-----cc-c
Q 046623 51 DFQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-----QL-S 120 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~-~ 120 (218)
+++++++|=.|+..|. .+..+++.|. +|+.++.++ .++.+.+.+...+. .+.++.+|+.+...- .. .
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~ 79 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAH 79 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHH
Confidence 3678899999987663 3445567777 999999999 88888888877773 478888998766421 11 1
Q ss_pred c-CCCCcEEEEcccc
Q 046623 121 E-LGEFDMVIMSDVF 134 (218)
Q Consensus 121 ~-~~~~D~Iv~~~~~ 134 (218)
. .+..|+++.+...
T Consensus 80 ~~~g~idilinnag~ 94 (258)
T d1ae1a_ 80 VFDGKLNILVNNAGV 94 (258)
T ss_dssp HTTSCCCEEEECCCC
T ss_pred HhCCCcEEEeccccc
Confidence 2 2568888875544
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=90.17 E-value=0.81 Score=33.78 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=50.4
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-----~~ 121 (218)
++++++|=-|++.|. .+..+++.|+ +|+.+|.++ .++.+.+.+ + .+..++.+|+.+...-+ . ..
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 77 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAEL---G--ERSMFVRHDVSSEADWTLVMAAVQRR 77 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---C--TTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C--CCeEEEEeecCCHHHHHHHHHHHHHH
Confidence 578888877776663 3444566776 899999998 776665443 3 34677788877653211 1 12
Q ss_pred CCCCcEEEEcccc
Q 046623 122 LGEFDMVIMSDVF 134 (218)
Q Consensus 122 ~~~~D~Iv~~~~~ 134 (218)
.++.|+++.+.-.
T Consensus 78 ~g~iDilVnnAG~ 90 (253)
T d1hxha_ 78 LGTLNVLVNNAGI 90 (253)
T ss_dssp HCSCCEEEECCCC
T ss_pred hCCCCeEEecccc
Confidence 3689999976544
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=90.02 E-value=0.55 Score=34.84 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=56.5
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-cc-----ccc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQ-----LSE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~-----~~~ 121 (218)
++++++|=-|+++|. .+..+++.|+ +|+.+|.++ .++.+.+.++..+. ++..+.+|+.+... .. ...
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVRD 79 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence 578889988877763 4445577777 899999999 88888888877663 48888899876531 11 113
Q ss_pred CCCCcEEEEccc
Q 046623 122 LGEFDMVIMSDV 133 (218)
Q Consensus 122 ~~~~D~Iv~~~~ 133 (218)
.++.|+++.+.-
T Consensus 80 ~g~iDilVnnaG 91 (260)
T d1zema1 80 FGKIDFLFNNAG 91 (260)
T ss_dssp HSCCCEEEECCC
T ss_pred hCCCCeehhhhc
Confidence 368999997543
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.96 E-value=0.96 Score=33.54 Aligned_cols=82 Identities=22% Similarity=0.308 Sum_probs=53.2
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc------ccc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ------LSE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~~ 121 (218)
++|+++|=-|+++|. ++..+++.|. +|+.++.++ .++.+.+....... ..+.....|..+..... ...
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~ 89 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMTFAEQFVAQAGKL 89 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhc-ccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 578899988888873 4455577776 999999998 88877666544332 33666666655432111 012
Q ss_pred CCCCcEEEEccccc
Q 046623 122 LGEFDMVIMSDVFY 135 (218)
Q Consensus 122 ~~~~D~Iv~~~~~~ 135 (218)
.+..|+++.+....
T Consensus 90 ~g~~~~li~nag~~ 103 (269)
T d1xu9a_ 90 MGGLDMLILNHITN 103 (269)
T ss_dssp HTSCSEEEECCCCC
T ss_pred hCCccccccccccc
Confidence 36789888765543
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.95 E-value=0.65 Score=34.06 Aligned_cols=75 Identities=24% Similarity=0.298 Sum_probs=49.6
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-c-cccCCCC
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-Q-LSELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~~~~ 125 (218)
++|+++|=-|++.|. .+..+++.|+ +|+.+|.++ .++.+.+.. ..+..+.+|+.+...- . +...++.
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~g~i 75 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGGIGPV 75 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 678899988877763 3444567776 899999987 665544332 2367788888765321 1 1234789
Q ss_pred cEEEEccc
Q 046623 126 DMVIMSDV 133 (218)
Q Consensus 126 D~Iv~~~~ 133 (218)
|+++.+.-
T Consensus 76 DilVnnAg 83 (242)
T d1cyda_ 76 DLLVNNAA 83 (242)
T ss_dssp SEEEECCC
T ss_pred eEEEECCc
Confidence 99997643
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.89 E-value=0.45 Score=35.60 Aligned_cols=81 Identities=22% Similarity=0.318 Sum_probs=57.6
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC-CceEEEEeecCCCCcc-c----c-
Q 046623 51 DFQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG-GRVEVRELVWGSDDLS-Q----L- 119 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~-~----~- 119 (218)
.++++++|=-|++.|. .+..+++.|+ +|+.+|.++ .++.+.+.+...+.. .++..+.+|+.+...- . .
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 80 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 80 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHH
Confidence 4678888888877763 4445577777 899999999 888888888776543 3578889998765311 1 1
Q ss_pred ccCCCCcEEEEcc
Q 046623 120 SELGEFDMVIMSD 132 (218)
Q Consensus 120 ~~~~~~D~Iv~~~ 132 (218)
...++.|+++.+.
T Consensus 81 ~~~g~iDilvnnA 93 (272)
T d1xkqa_ 81 KQFGKIDVLVNNA 93 (272)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHhCCceEEEeCC
Confidence 1236899999764
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.88 E-value=0.51 Score=33.02 Aligned_cols=94 Identities=15% Similarity=-0.038 Sum_probs=55.3
Q ss_pred CCCCeEEEECCC--CCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc--ccCCCCc
Q 046623 52 FQNKSVLELGAG--AGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL--SELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G--~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~D 126 (218)
.++.+||=-|++ .|..++.+++.-..+|+++-.++ ..+.+++. |.. .++. ..+...... ...+.+|
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l----Ga~---~vi~--~~~~~~~~~~~~~~~gvD 100 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL----GAK---EVLA--REDVMAERIRPLDKQRWA 100 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT----TCS---EEEE--CC---------CCSCCEE
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc----ccc---eeee--cchhHHHHHHHhhccCcC
Confidence 457789888864 45677777755445899998887 77776533 432 1221 111111111 1345799
Q ss_pred EEEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+|+= +.. ...+....++|+++|+++.+.
T Consensus 101 ~vid--~vg-----g~~~~~~l~~l~~~Griv~~G 128 (176)
T d1xa0a2 101 AAVD--PVG-----GRTLATVLSRMRYGGAVAVSG 128 (176)
T ss_dssp EEEE--CST-----TTTHHHHHHTEEEEEEEEECS
T ss_pred EEEE--cCC-----chhHHHHHHHhCCCceEEEee
Confidence 8774 222 345778889999999555553
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=89.52 E-value=0.7 Score=34.24 Aligned_cols=81 Identities=17% Similarity=0.223 Sum_probs=56.4
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-----cc-c
Q 046623 51 DFQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-----QL-S 120 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~-~ 120 (218)
+++++++|=-|++.|. ++..+++.|+ +|+.+|.++ .++.+.+.+...+ .++.++.+|+.+...- .. .
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVAN 81 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHH
Confidence 3678899988887763 3445567777 899999998 8888877777765 4478888888764311 11 1
Q ss_pred cC-CCCcEEEEcccc
Q 046623 121 EL-GEFDMVIMSDVF 134 (218)
Q Consensus 121 ~~-~~~D~Iv~~~~~ 134 (218)
.. .+.|+++.+.-.
T Consensus 82 ~~~~~idilvnnAG~ 96 (259)
T d2ae2a_ 82 HFHGKLNILVNNAGI 96 (259)
T ss_dssp HTTTCCCEEEECCCC
T ss_pred HhCCCceEEEECCce
Confidence 22 379999976543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.48 E-value=0.26 Score=36.63 Aligned_cols=67 Identities=6% Similarity=-0.021 Sum_probs=44.3
Q ss_pred cCCCCcEEEEcccccCC-----------cchHHHHHHHHHHhcCCCceEEEEEeecc-----CChHHHHHHHHHhCCcEE
Q 046623 121 ELGEFDMVIMSDVFYDP-----------EEMVGLGKTLKRVCGTGRHTVVWAVSEVR-----TRTGDCLHELIMSQGFRV 184 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~-----------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~-----~~~~~~~~~~~~~~gf~~ 184 (218)
+.+++|+|+.++|+... +.+...+..+.++|+++|.+++.+..... ......+..++...+|..
T Consensus 20 ~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (279)
T d1eg2a_ 20 PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLISIISHMRQNSKMLL 99 (279)
T ss_dssp CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHHHHHHHHHHHCCCEE
T ss_pred cCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchhhHHHHHHhccCcee
Confidence 67899999998886421 22567778899999999955555433321 123344445557889887
Q ss_pred EEE
Q 046623 185 IEL 187 (218)
Q Consensus 185 ~~~ 187 (218)
...
T Consensus 100 ~~~ 102 (279)
T d1eg2a_ 100 ANL 102 (279)
T ss_dssp EEE
T ss_pred eee
Confidence 665
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=88.78 E-value=0.73 Score=34.08 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=53.9
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHH-HHhCCCCceEEEEeecCCCCcc-----cc-
Q 046623 51 DFQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNV-EANGLGGRVEVRELVWGSDDLS-----QL- 119 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~-~~~~~~~~~~~~~~d~~~~~~~-----~~- 119 (218)
+++++++|=-|++.|. .+..+++.|+ +|+.+|.++ .++.+.+.+ +..+ .++..+.+|+.+...- ..
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSNTDIVTKTIQQID 82 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHH
Confidence 3678889988877663 3444567777 899999998 665554444 4445 3478888998765411 11
Q ss_pred ccCCCCcEEEEcccc
Q 046623 120 SELGEFDMVIMSDVF 134 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~ 134 (218)
...++.|+++.+...
T Consensus 83 ~~~g~iDilVnnAg~ 97 (260)
T d1h5qa_ 83 ADLGPISGLIANAGV 97 (260)
T ss_dssp HHSCSEEEEEECCCC
T ss_pred HHhCCCcEecccccc
Confidence 234789999876544
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=88.63 E-value=0.7 Score=34.16 Aligned_cols=106 Identities=17% Similarity=0.191 Sum_probs=64.7
Q ss_pred CCCCeEEEECCCCC---HHHHHHHHhCCCeEEEe-cCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-c-----cc
Q 046623 52 FQNKSVLELGAGAG---LPGLTAARLGATRVVLT-DVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-Q-----LS 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G---~~~~~l~~~~~~~v~~~-D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~-----~~ 120 (218)
+.|+++|=-|++.| ..+..+++.|+ +|+.. ..++ ..+.+.+.+...+. ++.++.+|+.+...- . ..
T Consensus 4 L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~ 80 (259)
T d1ja9a_ 4 LAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVS 80 (259)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHHH
Confidence 56888886665544 23444466677 67765 4555 77888888887773 488899998754311 1 11
Q ss_pred cCCCCcEEEEcccccCCcc-------------------hHHHHHHHHHHhcCCCceEEE
Q 046623 121 ELGEFDMVIMSDVFYDPEE-------------------MVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~~~-------------------~~~~l~~~~~lL~~gG~~~i~ 160 (218)
..+..|+++.+.-...... .-.+.+.+.+.|+.+|..+++
T Consensus 81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii 139 (259)
T d1ja9a_ 81 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT 139 (259)
T ss_dssp HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence 3368999997655443221 223445556667777755554
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=88.58 E-value=0.2 Score=34.83 Aligned_cols=93 Identities=20% Similarity=0.182 Sum_probs=54.9
Q ss_pred CCCCCCeEEEECC-C-CCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCc
Q 046623 50 FDFQNKSVLELGA-G-AGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 50 ~~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
...++++||=.|+ | .|..++.+++....+|++++.++ ..+.+++ .|.. .++ |..+. .........+|
T Consensus 24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~----lGa~---~~i--~~~~~-~~~~~~~~g~D 93 (171)
T d1iz0a2 24 QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE---EAA--TYAEV-PERAKAWGGLD 93 (171)
T ss_dssp TCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS---EEE--EGGGH-HHHHHHTTSEE
T ss_pred CCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc----cccc---eee--ehhhh-hhhhhcccccc
Confidence 3467889998874 3 34566666655444899999887 7766654 3433 122 22211 11122346799
Q ss_pred EEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+|+- +.. + .+....++++++|+++.+
T Consensus 94 ~v~d--~~G--~----~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 94 LVLE--VRG--K----EVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EEEE--CSC--T----THHHHHTTEEEEEEEEEC
T ss_pred cccc--ccc--h----hHHHHHHHHhcCCcEEEE
Confidence 8873 322 1 246677899999965554
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=88.54 E-value=0.23 Score=35.19 Aligned_cols=43 Identities=37% Similarity=0.472 Sum_probs=32.8
Q ss_pred CCCCeEEEECCC-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHH
Q 046623 52 FQNKSVLELGAG-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNV 95 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~ 95 (218)
.++.+|+=||+| .|..+...| ..|+ +|+.+|.++ .++.++...
T Consensus 27 V~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~ 72 (183)
T d1l7da1 27 VPPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLG 72 (183)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTT
T ss_pred cCCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhh
Confidence 356799999999 556666665 4565 999999999 888876553
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=88.41 E-value=0.98 Score=33.28 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=52.0
Q ss_pred CeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc------cccCCC
Q 046623 55 KSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ------LSELGE 124 (218)
Q Consensus 55 ~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~~~~~ 124 (218)
+.+|=-|++.|. .+..+++.|+ +|+.+|.++ .++.+.+.++..+. ++.++.+|+.+...-+ ....++
T Consensus 3 KValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYGP 79 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 445656665553 3344567776 899999999 88888888877663 4888999987654111 123478
Q ss_pred CcEEEEcccc
Q 046623 125 FDMVIMSDVF 134 (218)
Q Consensus 125 ~D~Iv~~~~~ 134 (218)
.|+++.+.-.
T Consensus 80 iDilVnnAG~ 89 (257)
T d2rhca1 80 VDVLVNNAGR 89 (257)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEecccc
Confidence 9999976433
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=88.20 E-value=1.1 Score=31.25 Aligned_cols=101 Identities=8% Similarity=-0.012 Sum_probs=54.3
Q ss_pred CCCCeEEEECCCCC---HHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc--ccc--ccC
Q 046623 52 FQNKSVLELGAGAG---LPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL--SQL--SEL 122 (218)
Q Consensus 52 ~~~~~vLDlG~G~G---~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~--~~~ 122 (218)
.++.+||=+.+|+| ..++.+++ .|+ +++++-.++ ..+...+.+++.|....+.....+..+... .+. ...
T Consensus 27 ~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g 105 (189)
T d1gu7a2 27 TPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSG 105 (189)
T ss_dssp CTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhcc
Confidence 56778888855554 44555554 465 788775555 666666666677654211111111111100 000 023
Q ss_pred CCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 123 GEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
..+|+++= +.. .+.+....++|+++|+++.+
T Consensus 106 ~~vdvv~D--~vg-----~~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 106 GEAKLALN--CVG-----GKSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp CCEEEEEE--SSC-----HHHHHHHHHTSCTTCEEEEC
T ss_pred CCceEEEE--CCC-----cchhhhhhhhhcCCcEEEEE
Confidence 46888872 321 34567778999999955544
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=87.87 E-value=1.7 Score=29.88 Aligned_cols=116 Identities=17% Similarity=0.144 Sum_probs=61.0
Q ss_pred CCCCCCeEEEECCCCCHHHHH-HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 50 FDFQNKSVLELGAGAGLPGLT-AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 50 ~~~~~~~vLDlG~G~G~~~~~-l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
...++++||=+|||.-.-++. ....+..+++.+..+. ..+...+.+.... .+.... +... ....+|+
T Consensus 14 ~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~---~~~~~~--~~~~------~~~~~di 82 (171)
T d1p77a1 14 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG---NIQAVS--MDSI------PLQTYDL 82 (171)
T ss_dssp CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS---CEEEEE--GGGC------CCSCCSE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcc---ccchhh--hccc------cccccce
Confidence 456788999999984433332 2234567899999888 6666666664432 233332 2211 3467999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCc
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGF 182 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf 182 (218)
++..-+......... .....++++..++-+++. .+....++... ++.|.
T Consensus 83 iIN~tp~g~~~~~~~---~~~~~~~~~~~~~D~vy~--~p~~T~~l~~A-~~~g~ 131 (171)
T d1p77a1 83 VINATSAGLSGGTAS---VDAEILKLGSAFYDMQYA--KGTDTPFIALC-KSLGL 131 (171)
T ss_dssp EEECCCC-------C---CCHHHHHHCSCEEESCCC--TTSCCHHHHHH-HHTTC
T ss_pred eeecccccccccccc---hhhhhhcccceeeeeecc--CcccHHHHHHH-HHcCC
Confidence 997666543222111 122345566522212221 12334566666 66776
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.87 E-value=0.21 Score=34.83 Aligned_cols=93 Identities=18% Similarity=0.098 Sum_probs=52.9
Q ss_pred CCCCeEEEECC--CCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-cccc---cCCC
Q 046623 52 FQNKSVLELGA--GAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQLS---ELGE 124 (218)
Q Consensus 52 ~~~~~vLDlG~--G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~---~~~~ 124 (218)
.++++||=.|+ |.|..++.+++.-..+++++..++ ..+.++ ..|.. .++ +..+... .+.. ....
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~----~~Ga~---~vi--~~~~~~~~~~v~~~t~~~g 94 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS----RLGVE---YVG--DSRSVDFADEILELTDGYG 94 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH----TTCCS---EEE--ETTCSTHHHHHHHHTTTCC
T ss_pred CCCCEEEEECCCCCcccccchhhccccccceeeecccccccccc----ccccc---ccc--cCCccCHHHHHHHHhCCCC
Confidence 56788888773 245556666644334888877666 555554 34432 222 2233322 1111 2357
Q ss_pred CcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 125 FDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+|+|+-.-. .+.++.+.++|+++|+++.+
T Consensus 95 ~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 95 VDVVLNSLA-------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp EEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred EEEEEeccc-------chHHHHHHHHhcCCCEEEEE
Confidence 999995221 34667788999999944443
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.85 E-value=0.85 Score=33.77 Aligned_cols=81 Identities=19% Similarity=0.102 Sum_probs=57.2
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-c----c-c
Q 046623 51 DFQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-Q----L-S 120 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~----~-~ 120 (218)
+++++++|=-|+++|. .+..+++.|+ +|+.++.++ .++.+.+.+...+ .++....+|+.+...- . . .
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSS 81 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHH
Confidence 4678899988887774 4445577777 899999998 8888777777665 3488888888755311 1 1 1
Q ss_pred c-CCCCcEEEEcccc
Q 046623 121 E-LGEFDMVIMSDVF 134 (218)
Q Consensus 121 ~-~~~~D~Iv~~~~~ 134 (218)
. .+..|+++.+.-.
T Consensus 82 ~~~g~idilvnnAG~ 96 (259)
T d1xq1a_ 82 MFGGKLDILINNLGA 96 (259)
T ss_dssp HHTTCCSEEEEECCC
T ss_pred HhCCCcccccccccc
Confidence 1 2679999976544
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=87.75 E-value=0.61 Score=32.35 Aligned_cols=124 Identities=12% Similarity=0.011 Sum_probs=67.6
Q ss_pred EEEECCCCC--HHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEccc
Q 046623 57 VLELGAGAG--LPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDV 133 (218)
Q Consensus 57 vLDlG~G~G--~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~ 133 (218)
|==||.|.- .++..+.+.|. +|++.|.++ ..+...++-.... . ... . . ............|.++..-+
T Consensus 5 Ig~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~--~-~~~--a--~-~~~~~~~~~~~~~~ii~~~~ 75 (176)
T d2pgda2 5 IALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEAKGT--K-VLG--A--H-SLEEMVSKLKKPRRIILLVK 75 (176)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTTTTS--S-CEE--C--S-SHHHHHHHBCSSCEEEECSC
T ss_pred EEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhccccc--c-ccc--h--h-hhhhhhhhhcccceEEEecC
Confidence 444666632 23334456666 899999999 7766554321111 0 100 0 0 00000112345677776333
Q ss_pred ccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCC
Q 046623 134 FYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGG 193 (218)
Q Consensus 134 ~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~ 193 (218)
...........+...+++|- +++-.++.......+..+.+ .+.+....+.|+.--+
T Consensus 76 --~~~~v~~v~~~l~~~~~~g~-iiid~sT~~~~~~~~~~~~~-~~~g~~~ldapvsGg~ 131 (176)
T d2pgda2 76 --AGQAVDNFIEKLVPLLDIGD-IIIDGGNSEYRDTMRRCRDL-KDKGILFVGSGVSGGE 131 (176)
T ss_dssp --TTHHHHHHHHHHHHHCCTTC-EEEECSCCCHHHHHHHHHHH-HHTTCEEEEEEEESHH
T ss_pred --chHHHHHHHHHHHhccccCc-EEEecCcchhHHHHHHHHHH-HhcCCceeccccccCc
Confidence 33455667778888888876 33333333333444555555 8899999998777544
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=87.68 E-value=0.56 Score=32.40 Aligned_cols=93 Identities=15% Similarity=0.026 Sum_probs=55.8
Q ss_pred CCCCeEEEECCCC--CHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-ccc---cCCC
Q 046623 52 FQNKSVLELGAGA--GLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QLS---ELGE 124 (218)
Q Consensus 52 ~~~~~vLDlG~G~--G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~---~~~~ 124 (218)
.++++||=.|++. |...+.+++....+|++++.++ ..+.+++ .|.. +++ |..+.... .+. ....
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~----lGa~---~vi--~~~~~d~~~~v~~~t~g~g 97 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK----AGAW---QVI--NYREEDLVERLKEITGGKK 97 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTCS---EEE--ETTTSCHHHHHHHHTTTCC
T ss_pred CCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh----cCCe---EEE--ECCCCCHHHHHHHHhCCCC
Confidence 5688998886664 4566666654334999999998 7777654 3432 232 33333221 111 2346
Q ss_pred CcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 125 FDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+|+|+-.-. .+.+.....+++++|+++++
T Consensus 98 ~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 98 VRVVYDSVG-------RDTWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp EEEEEECSC-------GGGHHHHHHTEEEEEEEEEC
T ss_pred eEEEEeCcc-------HHHHHHHHHHHhcCCeeeec
Confidence 887774211 23567788899999954443
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.67 E-value=0.78 Score=34.27 Aligned_cols=80 Identities=19% Similarity=0.313 Sum_probs=56.9
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC-CceEEEEeecCCCCcc-cc-----c
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG-GRVEVRELVWGSDDLS-QL-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~-~~-----~ 120 (218)
++++++|=-|+++|. .+..+++.|+ +|+.+|.++ .++.+.+.+...+.. .++..+.+|+.+...- .. .
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 568888888887773 3445567777 899999999 888888888776543 3578899998765311 11 1
Q ss_pred cCCCCcEEEEcc
Q 046623 121 ELGEFDMVIMSD 132 (218)
Q Consensus 121 ~~~~~D~Iv~~~ 132 (218)
..++.|+++.+.
T Consensus 81 ~~G~iDilVnnA 92 (274)
T d1xhla_ 81 KFGKIDILVNNA 92 (274)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCceEEEeec
Confidence 236899999764
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=87.66 E-value=0.28 Score=33.85 Aligned_cols=95 Identities=17% Similarity=0.151 Sum_probs=57.3
Q ss_pred CCCCCeEEEECCC--CCHHHHHH-HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-ccc---ccC
Q 046623 51 DFQNKSVLELGAG--AGLPGLTA-ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQL---SEL 122 (218)
Q Consensus 51 ~~~~~~vLDlG~G--~G~~~~~l-~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~---~~~ 122 (218)
..++.+||=+|++ .|...+.+ ...+...|+.+|.++ ..+.+++. |.. .++. ..+... ... ...
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~---~~i~--~~~~~~~~~~~~~~~~ 95 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD---YVIN--ASMQDPLAEIRRITES 95 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS---EEEE--TTTSCHHHHHHHHTTT
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc---eeec--cCCcCHHHHHHHHhhc
Confidence 4678899999974 44444544 356767999999998 77777653 422 2232 222211 111 123
Q ss_pred CCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 123 GEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
..+|+++-.. --...++.+.++++|+|+++++
T Consensus 96 ~~~d~vid~~------g~~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 96 KGVDAVIDLN------NSEKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp SCEEEEEESC------CCHHHHTTGGGGEEEEEEEEEC
T ss_pred ccchhhhccc------ccchHHHhhhhhcccCCEEEEe
Confidence 4689888521 1255667788899999954444
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=87.65 E-value=1 Score=34.25 Aligned_cols=103 Identities=12% Similarity=0.051 Sum_probs=58.0
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCC--CceEEEEeecCCCCcccccc----CCCCcE
Q 046623 54 NKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLG--GRVEVRELVWGSDDLSQLSE----LGEFDM 127 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~----~~~~D~ 127 (218)
...|+.||||-=.-...+...+..+++=+|..+.++.-++.++..+.. .+...+..|+.+...+.... .+..-+
T Consensus 90 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ptl 169 (297)
T d2uyoa1 90 IRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA 169 (297)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred CCeEEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCEE
Confidence 346777999865554444222223555555444555555566666543 44677777776542222111 122234
Q ss_pred EEEcccccC--CcchHHHHHHHHHHhcCCCc
Q 046623 128 VIMSDVFYD--PEEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 128 Iv~~~~~~~--~~~~~~~l~~~~~lL~~gG~ 156 (218)
+++-.++.+ .+...++++.+..+..||+.
T Consensus 170 ~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~ 200 (297)
T d2uyoa1 170 WLAEGLLMYLPATAQDGLFTEIGGLSAVGSR 200 (297)
T ss_dssp EEECSCGGGSCHHHHHHHHHHHHHTCCTTCE
T ss_pred EEEccccccCCHHHHHHHHHHHHHhCCCCCE
Confidence 444444443 46788899999999889883
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=87.39 E-value=3.7 Score=29.69 Aligned_cols=74 Identities=24% Similarity=0.233 Sum_probs=49.1
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~ 121 (218)
++++++|=-|+++|. .+..+++.|+ +|+.+|.++ .++.+.+.+ ...++.+|+.+...- .. ..
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~~ 74 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAV-------GAHPVVMDVADPASVERGFAEALAH 74 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT-------TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc-------CCeEEEEecCCHHHHHHHHHHHHHh
Confidence 567888888887773 3444567776 899999998 766654432 266788888765321 11 12
Q ss_pred CCCCcEEEEccc
Q 046623 122 LGEFDMVIMSDV 133 (218)
Q Consensus 122 ~~~~D~Iv~~~~ 133 (218)
.++.|+++.+.-
T Consensus 75 ~g~iDilVnnAG 86 (242)
T d1ulsa_ 75 LGRLDGVVHYAG 86 (242)
T ss_dssp HSSCCEEEECCC
T ss_pred cCCceEEEECCc
Confidence 368999987643
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=87.19 E-value=0.81 Score=33.97 Aligned_cols=81 Identities=21% Similarity=0.275 Sum_probs=54.7
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc--hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----
Q 046623 51 DFQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP--LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL----- 119 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~----- 119 (218)
+++++++|=-|++.|. .+..+++.|+ +|+.++.+. .++.+.+.++..+ .++..+.+|+.+...- ..
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAI 80 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHH
Confidence 3678888887877763 3444567776 899999875 6677777777666 3478888898765311 11
Q ss_pred ccCCCCcEEEEcccc
Q 046623 120 SELGEFDMVIMSDVF 134 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~ 134 (218)
...++.|+++.+.-.
T Consensus 81 ~~~G~iDiLVnnAG~ 95 (261)
T d1geea_ 81 KEFGKLDVMINNAGL 95 (261)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHhCCCCEeecccee
Confidence 123689999976544
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=87.19 E-value=1.6 Score=32.57 Aligned_cols=81 Identities=23% Similarity=0.301 Sum_probs=54.4
Q ss_pred CCCCCeEEEECCCCC---HHHHHHHHhCCCeEEEecCcc-hHHHHHHHH-HHhCCCCceEEEEeecCCCCccc------c
Q 046623 51 DFQNKSVLELGAGAG---LPGLTAARLGATRVVLTDVKP-LLPGLINNV-EANGLGGRVEVRELVWGSDDLSQ------L 119 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G---~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~-~~~~~~~~~~~~~~d~~~~~~~~------~ 119 (218)
.++|+++|=-|+..| ..+..+++.|+ +|+.+|.++ .++.+.+.+ ...+ ..+.++.+|+.+...-+ .
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~ 98 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTG--NKVHAIQCDVRDPDMVQNTVSELI 98 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcC--CceEEEEecccChHHHHHHhhhhh
Confidence 367889999988776 24445567776 999999998 776655554 3444 34778888887654211 1
Q ss_pred ccCCCCcEEEEcccc
Q 046623 120 SELGEFDMVIMSDVF 134 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~ 134 (218)
...+..|+++.+.-.
T Consensus 99 ~~~g~iDilvnnAg~ 113 (294)
T d1w6ua_ 99 KVAGHPNIVINNAAG 113 (294)
T ss_dssp HHTCSCSEEEECCCC
T ss_pred hhccccchhhhhhhh
Confidence 234789999976543
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=86.96 E-value=1.2 Score=32.65 Aligned_cols=77 Identities=22% Similarity=0.230 Sum_probs=51.0
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-ccc-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQL-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~-----~~ 121 (218)
++++++|=-|++.|. .+..+++.|+ +|+.+|.++ .++.+.+.+. .+...+.+|+.+... ... ..
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAE 75 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcc
Confidence 578888888877663 3444567776 899999998 7777665542 236777888876531 111 23
Q ss_pred CCCCcEEEEcccc
Q 046623 122 LGEFDMVIMSDVF 134 (218)
Q Consensus 122 ~~~~D~Iv~~~~~ 134 (218)
.++.|+++.+...
T Consensus 76 ~g~iDilVnnAg~ 88 (243)
T d1q7ba_ 76 FGEVDILVNNAGI 88 (243)
T ss_dssp TCSCSEEEECCCC
T ss_pred cCCcceehhhhhh
Confidence 4689999976433
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=86.96 E-value=1.6 Score=32.02 Aligned_cols=74 Identities=22% Similarity=0.330 Sum_probs=50.3
Q ss_pred EEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc------cccCCCCc
Q 046623 57 VLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ------LSELGEFD 126 (218)
Q Consensus 57 vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~~~~~~D 126 (218)
+|=-|++.|. .+..+++.|+ +|+.+|.++ .++.+.+.+...+ .++..+.+|+.+...-. ....++.|
T Consensus 4 alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 4 ALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred EEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 3555666553 3344467776 899999999 8888888887766 34888889987653111 12347899
Q ss_pred EEEEccc
Q 046623 127 MVIMSDV 133 (218)
Q Consensus 127 ~Iv~~~~ 133 (218)
+++.+.-
T Consensus 81 ilVnnAG 87 (255)
T d1gega_ 81 VIVNNAG 87 (255)
T ss_dssp EEEECCC
T ss_pred EEEeccc
Confidence 9997643
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=86.87 E-value=0.7 Score=32.13 Aligned_cols=93 Identities=12% Similarity=-0.011 Sum_probs=55.8
Q ss_pred CCCCeEEEECCCCC--HHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-ccc---ccCCC
Q 046623 52 FQNKSVLELGAGAG--LPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQL---SELGE 124 (218)
Q Consensus 52 ~~~~~vLDlG~G~G--~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~---~~~~~ 124 (218)
.++++||=.|++.| ..++.+++....+|+++..++ ..+.+++. +.. +++. ..+... +.. .....
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga~---~vi~--~~~~~~~~~~~~~~~~~G 98 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GFD---AAFN--YKTVNSLEEALKKASPDG 98 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS---EEEE--TTSCSCHHHHHHHHCTTC
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hhh---hhcc--cccccHHHHHHHHhhcCC
Confidence 57889997777543 455556655455999999887 66555443 422 2222 122221 111 13356
Q ss_pred CcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 125 FDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+|+|+= +.. .+.++...++++++|.++++
T Consensus 99 vd~v~D--~vG-----~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 99 YDCYFD--NVG-----GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp EEEEEE--SSC-----HHHHHHHGGGEEEEEEEEEC
T ss_pred CceeEE--ecC-----chhhhhhhhhccCCCeEEee
Confidence 999884 221 45778899999999944444
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=86.87 E-value=0.77 Score=34.12 Aligned_cols=78 Identities=21% Similarity=0.289 Sum_probs=53.5
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~ 121 (218)
++++++|=-|+++|. .+..+++.|+ +|+.+|.++ .++.+.+.+... ..+.++.+|+.+...- .. ..
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIAK 79 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCC---CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 678899999988774 3444567776 899999998 777766665332 4577888898765311 11 13
Q ss_pred CCCCcEEEEccc
Q 046623 122 LGEFDMVIMSDV 133 (218)
Q Consensus 122 ~~~~D~Iv~~~~ 133 (218)
.++.|+++.+.-
T Consensus 80 ~g~iD~lVnnAG 91 (268)
T d2bgka1 80 HGKLDIMFGNVG 91 (268)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCcceeccccc
Confidence 368999997653
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=85.61 E-value=1.2 Score=33.00 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=55.6
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC-CceEEEEeecCCCCcc-cc-----c
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG-GRVEVRELVWGSDDLS-QL-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~-~~-----~ 120 (218)
++++.+|=-|++.|. .+..+++.|+ +|+.+|.++ .++.+.+.+...+.. .++.++.+|+.+...- .. .
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 567788877877663 3444567777 899999998 888888877766543 4578888998765311 11 1
Q ss_pred cCCCCcEEEEcc
Q 046623 121 ELGEFDMVIMSD 132 (218)
Q Consensus 121 ~~~~~D~Iv~~~ 132 (218)
..++.|+++.+.
T Consensus 82 ~~g~iDilvnnA 93 (264)
T d1spxa_ 82 KFGKLDILVNNA 93 (264)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCEeeccc
Confidence 236899999764
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=84.43 E-value=1.5 Score=30.30 Aligned_cols=126 Identities=11% Similarity=0.007 Sum_probs=61.2
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 50 FDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 50 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
...++++||=+|+|.-.-++..+.....+++.+..+. ..+...+.+............ ++.+... ....+|++
T Consensus 14 ~~~~~k~vlIlGaGG~arai~~aL~~~~~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~dli 87 (177)
T d1nvta1 14 GRVKDKNIVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEIAEKLNKKFGEEV--KFSGLDV----DLDGVDII 87 (177)
T ss_dssp CCCCSCEEEEECCSHHHHHHHHHHTSSSEEEEECSSHHHHHHHHHHHHHHHTCCHHHHE--EEECTTC----CCTTCCEE
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHccccceeeehhhhhHHHHHHHHHHHhhchhhhhhh--hhhhhhh----ccchhhhh
Confidence 3478899999999854444443434445888888887 666555554332211111111 1111111 23568988
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~ 185 (218)
+...+.............-...++++. ++....+.+....+++.. ++.|+.+.
T Consensus 88 In~tp~g~~~~~~~~~~~~~~~~~~~~---~v~D~~y~p~~T~l~~~a-~~~G~~~i 140 (177)
T d1nvta1 88 INATPIGMYPNIDVEPIVKAEKLREDM---VVMDLIYNPLETVLLKEA-KKVNAKTI 140 (177)
T ss_dssp EECSCTTCTTCCSSCCSSCSTTCCSSS---EEEECCCSSSSCHHHHHH-HTTTCEEE
T ss_pred ccCCcccccccccccchhhhhccCccc---ceeeecCCcHhHHHHHHH-HHCCCccc
Confidence 876655421111100000011233443 222222334445666666 77776654
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=84.01 E-value=2.2 Score=30.72 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=45.8
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.+++++|=-|+++|. .+..+++.|+ +|+.+|.++ .++. .+ ..+..+|+.+.........++.|+
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~l~~-------~~----~~~~~~Dv~~~~~~~~~~~g~iD~ 69 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELLKR-------SG----HRYVVCDLRKDLDLLFEKVKEVDI 69 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH-------TC----SEEEECCTTTCHHHHHHHSCCCSE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHh-------cC----CcEEEcchHHHHHHHHHHhCCCcE
Confidence 467889988887773 3444567777 899999887 5432 12 456777876543222234578999
Q ss_pred EEEccc
Q 046623 128 VIMSDV 133 (218)
Q Consensus 128 Iv~~~~ 133 (218)
++.+.-
T Consensus 70 lVnnAG 75 (234)
T d1o5ia_ 70 LVLNAG 75 (234)
T ss_dssp EEECCC
T ss_pred EEeccc
Confidence 997643
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=83.32 E-value=1.1 Score=30.88 Aligned_cols=94 Identities=16% Similarity=-0.023 Sum_probs=53.5
Q ss_pred CCCCeEEEECCC--CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 52 FQNKSVLELGAG--AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G--~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.++.+||=-|++ .|..++.+++ .|+ +|+++..++ ..+.+++. +.. ..+..-|....... ....+.+|+
T Consensus 22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~l----Gad--~vi~~~~~~~~~~~-~~~~~gvd~ 93 (167)
T d1tt7a2 22 PEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL----GAS--EVISREDVYDGTLK-ALSKQQWQG 93 (167)
T ss_dssp GGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH----TCS--EEEEHHHHCSSCCC-SSCCCCEEE
T ss_pred CCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhh----ccc--ceEeccchhchhhh-cccCCCceE
Confidence 345577766642 4566666665 455 899999887 77776543 433 11111111111110 013357888
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|+= +.. .+.+....++|+++|+++++
T Consensus 94 vid--~vg-----g~~~~~~~~~l~~~G~iv~~ 119 (167)
T d1tt7a2 94 AVD--PVG-----GKQLASLLSKIQYGGSVAVS 119 (167)
T ss_dssp EEE--SCC-----THHHHHHHTTEEEEEEEEEC
T ss_pred EEe--cCc-----HHHHHHHHHHhccCceEEEe
Confidence 774 221 45778889999999955554
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=83.19 E-value=1.2 Score=33.27 Aligned_cols=81 Identities=14% Similarity=-0.072 Sum_probs=48.5
Q ss_pred EEEEeecCCCCccccccCCCCcEEEEcccccCC--------------cchHHHHHHHHHHhcCCCceEEEEEeec-----
Q 046623 105 EVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP--------------EEMVGLGKTLKRVCGTGRHTVVWAVSEV----- 165 (218)
Q Consensus 105 ~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~--------------~~~~~~l~~~~~lL~~gG~~~i~~~~~~----- 165 (218)
.++.+|..+... ..+.+++|+|+.++|+... +.+...+..+.++|+++|.+++.+....
T Consensus 14 ~l~~GD~le~l~--~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~~~~~ 91 (320)
T d1booa_ 14 SMYIGDSLELLE--SFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVP 91 (320)
T ss_dssp EEEESCHHHHGG--GSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEE
T ss_pred EEEehhHHHHHh--hCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccchhhcccc
Confidence 566666543221 1267899999998876421 1256678889999999995555443221
Q ss_pred --cCChHHHHHHHHHhCCcEEEEE
Q 046623 166 --RTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 166 --~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
.......+...+...++.....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T d1booa_ 92 ARSIYNFRVLIRMIDEVGFFLAED 115 (320)
T ss_dssp EECCHHHHHHHHHHHTTCCEEEEE
T ss_pred cccchhHHHHHHHHHhcCceEeee
Confidence 1112233333446778876665
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=82.02 E-value=4.6 Score=26.69 Aligned_cols=90 Identities=6% Similarity=-0.000 Sum_probs=49.3
Q ss_pred eEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 56 SVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
+|+=+|+ |..+..+ .+.+. .++.+|.++ ............ .+.++.+|..+...-....-+..|.+++
T Consensus 5 HiII~G~--g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~~----~~~vi~Gd~~d~~~L~~a~i~~a~~vi~ 77 (153)
T d1id1a_ 5 HFIVCGH--SILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGD----NADVIPGDSNDSSVLKKAGIDRCRAILA 77 (153)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCT----TCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred EEEEECC--CHHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhcC----CcEEEEccCcchHHHHHhccccCCEEEE
Confidence 4555555 4455544 34444 899999988 544443333332 3788998877654322224467888887
Q ss_pred cccccCCcchHHHHHHHHHHhcCCC
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
... .+...-......+-+.|..
T Consensus 78 ~~~---~d~~n~~~~~~~r~~~~~~ 99 (153)
T d1id1a_ 78 LSD---NDADNAFVVLSAKDMSSDV 99 (153)
T ss_dssp CSS---CHHHHHHHHHHHHHHTSSS
T ss_pred ccc---cHHHHHHHHHHHHHhCCCC
Confidence 432 1122223333445556655
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=81.78 E-value=3.1 Score=28.25 Aligned_cols=122 Identities=11% Similarity=-0.039 Sum_probs=64.2
Q ss_pred HHHHhcCCCCCCCeEEEECCCCCHHHHH--HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc
Q 046623 43 AQFISTHFDFQNKSVLELGAGAGLPGLT--AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL 119 (218)
Q Consensus 43 ~~~l~~~~~~~~~~vLDlG~G~G~~~~~--l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (218)
...+.+....++++||=+|||.-.-++. +.+.|..+++.+..+. ..+...+.+ + .... +..
T Consensus 6 ~~~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~---~----~~~~--~~~------- 69 (167)
T d1npya1 6 VKLIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY---G----YAYI--NSL------- 69 (167)
T ss_dssp HHHHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH---T----CEEE--SCC-------
T ss_pred HHHHHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhh---h----hhhh--hcc-------
Confidence 3444444434678999999986554443 4567777888888887 555544332 2 1111 111
Q ss_pred ccCCCCcEEEEcccccCCcchHHH-HHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEE
Q 046623 120 SELGEFDMVIMSDVFYDPEEMVGL-GKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~~~~~~~~~~-l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~ 185 (218)
....+|+|+-.-|+...+..... +..-...++++. ++....+.+....+++.. ++.|....
T Consensus 70 -~~~~~DliINaTpiGm~~~~~~~~l~~~~~~~~~~~---~v~D~vY~P~~T~ll~~A-~~~G~~~i 131 (167)
T d1npya1 70 -ENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNAS---VAFDVVAMPVETPFIRYA-QARGKQTI 131 (167)
T ss_dssp -TTCCCSEEEECSSTTCTTSTTTTSCSSCHHHHHHCS---EEEECCCSSSSCHHHHHH-HHTTCEEE
T ss_pred -cccchhhheeccccCCccccccccccccHhhcCCcc---eEEEEeeccCCCHHHHHH-HHCCCeEE
Confidence 23468999865555321111100 000012344443 233333334555677777 78887754
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=81.66 E-value=1.4 Score=32.40 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=53.7
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~ 121 (218)
++++++|=-|++.|. .+..+++.|+ +|+.+|.++ .++.+.+.+.. ..++.++.+|+.+...- .. ..
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCC---CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 678888888876663 3444567777 899999998 77777666532 24588899998765411 11 13
Q ss_pred CCCCcEEEEcccc
Q 046623 122 LGEFDMVIMSDVF 134 (218)
Q Consensus 122 ~~~~D~Iv~~~~~ 134 (218)
.++.|+++.+...
T Consensus 80 ~G~iDiLVnnAg~ 92 (251)
T d1zk4a1 80 FGPVSTLVNNAGI 92 (251)
T ss_dssp HSSCCEEEECCCC
T ss_pred hCCceEEEecccc
Confidence 3689999976544
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=81.54 E-value=3.7 Score=29.65 Aligned_cols=77 Identities=22% Similarity=0.172 Sum_probs=50.9
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-c----c-cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-Q----L-SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~----~-~~ 121 (218)
++++++|=.|++.|. .+..+++.|+ +|+.++.+. .++...+ ..+ ..+.++.+|+.+...- . . ..
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~---~~~--~~~~~~~~Dls~~~~i~~~~~~i~~~ 76 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVA---ALE--AEAIAVVADVSDPKAVEAVFAEALEE 76 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---TCC--SSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH---HcC--CceEEEEecCCCHHHHHHHHHHHHHH
Confidence 578899989988774 3444567776 999999987 6554333 333 4578888998765421 1 0 12
Q ss_pred CCCCcEEEEcccc
Q 046623 122 LGEFDMVIMSDVF 134 (218)
Q Consensus 122 ~~~~D~Iv~~~~~ 134 (218)
.++.|+++.+...
T Consensus 77 ~g~iDiLinnAg~ 89 (241)
T d2a4ka1 77 FGRLHGVAHFAGV 89 (241)
T ss_dssp HSCCCEEEEGGGG
T ss_pred hCCccEecccccc
Confidence 3689999986544
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=81.46 E-value=1.9 Score=31.61 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=51.6
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc--hHHHHHHHHH-HhCCCCceEEEEeecCCCCcc-cc-----
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP--LLPGLINNVE-ANGLGGRVEVRELVWGSDDLS-QL----- 119 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~--~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~-~~----- 119 (218)
++++++|=-|++.|. .+..+++.|+ +|+.++.++ .++.+.+.+. ..+ .++.++.+|+.+...- ..
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHG--VKVLYDGADLSKGEAVRGLVDNAV 78 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHT--SCEEEECCCTTSHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence 467788866766663 3444567777 899999874 6666666553 344 3478888998765311 11
Q ss_pred ccCCCCcEEEEcccc
Q 046623 120 SELGEFDMVIMSDVF 134 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~ 134 (218)
...++.|+++.|.-.
T Consensus 79 ~~~G~iDiLVnnAG~ 93 (260)
T d1x1ta1 79 RQMGRIDILVNNAGI 93 (260)
T ss_dssp HHHSCCSEEEECCCC
T ss_pred HHhCCCcEEEeeccc
Confidence 123689999976543
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=81.26 E-value=0.54 Score=32.10 Aligned_cols=116 Identities=16% Similarity=0.183 Sum_probs=62.7
Q ss_pred EEEECCCCCHH--HHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEccc
Q 046623 57 VLELGAGAGLP--GLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDV 133 (218)
Q Consensus 57 vLDlG~G~G~~--~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~ 133 (218)
|-=||+|.=.. +..+++.|. +|++.|.++ ..+.+.+. + .... .... + .....|+|++.-+
T Consensus 3 IgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~----~----~~~~-----~~~~-e--~~~~~d~ii~~v~ 65 (161)
T d1vpda2 3 VGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAA----G----AETA-----STAK-A--IAEQCDVIITMLP 65 (161)
T ss_dssp EEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT----T----CEEC-----SSHH-H--HHHHCSEEEECCS
T ss_pred EEEEehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHh----h----hhhc-----ccHH-H--HHhCCCeEEEEcC
Confidence 34467774433 334556666 899999998 76665432 2 1111 1111 1 2245799887322
Q ss_pred ccCCcchHHHH---HHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCC
Q 046623 134 FYDPEEMVGLG---KTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGG 193 (218)
Q Consensus 134 ~~~~~~~~~~l---~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~ 193 (218)
+.+....++ +.+...+++|. +++-.++.......+..+.+ .+.+....+.|+...+
T Consensus 66 --~~~~v~~v~~~~~~~~~~~~~g~-iiid~sT~~p~~~~~~~~~~-~~~g~~~vdapv~gg~ 124 (161)
T d1vpda2 66 --NSPHVKEVALGENGIIEGAKPGT-VLIDMSSIAPLASREISDAL-KAKGVEMLDAPVSGGE 124 (161)
T ss_dssp --SHHHHHHHHHSTTCHHHHCCTTC-EEEECSCCCHHHHHHHHHHH-HTTTCEEEECCEESHH
T ss_pred --CHHHHHHHHhCCcchhhccCCCC-EEEECCCCCHHHHHHHHHHH-HHcCCceecccccCCh
Confidence 223334444 33566677765 33334333333344444555 8889988887765433
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=81.09 E-value=2.1 Score=31.40 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=51.8
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-----~~ 121 (218)
++++++|=-|+++|. .+..+++.|+ +|+.+|.++ .++.+.+.+ + .++..+.+|+.+...-+ . ..
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~---~--~~~~~~~~Dvt~~~~v~~~~~~~~~~ 76 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEI---G--PAACAIALDVTDQASIDRCVAELLDR 76 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C--CceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 567888888887763 3445567776 899999987 666654433 3 44788888987654211 1 12
Q ss_pred CCCCcEEEEccccc
Q 046623 122 LGEFDMVIMSDVFY 135 (218)
Q Consensus 122 ~~~~D~Iv~~~~~~ 135 (218)
.++.|+++.+.-..
T Consensus 77 ~g~iDilVnnAg~~ 90 (256)
T d1k2wa_ 77 WGSIDILVNNAALF 90 (256)
T ss_dssp HSCCCEEEECCCCC
T ss_pred hCCccEEEeecccc
Confidence 36899999765543
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=80.88 E-value=3.8 Score=29.72 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=50.0
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-----ccC
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-----SEL 122 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-----~~~ 122 (218)
++++++|=-|++.|. .+..+++.|+ +|+.+|.++. +.+...++..+ .++..+.+|+.+...-+ . ...
T Consensus 3 L~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~-~~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 78 (247)
T d2ew8a1 3 LKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPA-PEAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTF 78 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCC-HHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCch-HHHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 678888888877663 3444567777 8999998772 12223344444 45888889987653111 1 123
Q ss_pred CCCcEEEEcccc
Q 046623 123 GEFDMVIMSDVF 134 (218)
Q Consensus 123 ~~~D~Iv~~~~~ 134 (218)
++.|+++.|.-.
T Consensus 79 G~iDilVnnAG~ 90 (247)
T d2ew8a1 79 GRCDILVNNAGI 90 (247)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 689999976544
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=80.33 E-value=4.5 Score=29.44 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=50.4
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCc-chHHHHHHHHHHhCCCCceEEEEeecCCCC--cccc-----c
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVK-PLLPGLINNVEANGLGGRVEVRELVWGSDD--LSQL-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~-~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~-----~ 120 (218)
+++++||=-|+++|. ++..+++.|+ +++.+..+ +..+.+.+...... ...+.+...|..... .... .
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~r~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~ 80 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTALAELKAINP-KVNITFHTYDVTVPVAESKKLLKKIFD 80 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHHHHHHHHCT-TSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCcccHHHHHHHHhhCC-CCCEEEEEeecCCCHHHHHHHHHHHHH
Confidence 678889988888774 4445567777 55555433 33333332222222 245788888876332 1111 1
Q ss_pred cCCCCcEEEEcccccCCcchH
Q 046623 121 ELGEFDMVIMSDVFYDPEEMV 141 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~~~~~ 141 (218)
..++.|+++.+.-....+..+
T Consensus 81 ~~g~iDilvnnAG~~~~~~~~ 101 (254)
T d1sbya1 81 QLKTVDILINGAGILDDHQIE 101 (254)
T ss_dssp HHSCCCEEEECCCCCCTTCHH
T ss_pred HcCCCCEEEeCCCCCCHHHHH
Confidence 236899999876655544433
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=80.16 E-value=5.4 Score=27.04 Aligned_cols=125 Identities=15% Similarity=0.132 Sum_probs=62.1
Q ss_pred EECCCC-C-HHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEccccc
Q 046623 59 ELGAGA-G-LPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFY 135 (218)
Q Consensus 59 DlG~G~-G-~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~ 135 (218)
=||+|. | .++..+++.|. +|++.|.++ ..+.+.+.............. .............+.+...-+
T Consensus 6 vIGlG~MG~~ma~~L~~~G~-~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-- 77 (178)
T d1pgja2 6 VVGLGVMGANLALNIAEKGF-KVAVFNRTYSKSEEFMKANASAPFAGNLKAF-----ETMEAFAASLKKPRKALILVQ-- 77 (178)
T ss_dssp EECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTTTSTTGGGEEEC-----SCHHHHHHHBCSSCEEEECCC--
T ss_pred EEeehHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCCccccccchhhh-----hhhhHHHHhcccceEEEEeec--
Confidence 355553 1 23344456665 899999998 666655443221111111111 000000001123333333111
Q ss_pred CCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCC
Q 046623 136 DPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGG 193 (218)
Q Consensus 136 ~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~ 193 (218)
........+..+...++++. .++-.++.......+..+.+ .+.++...+.|+...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~-iii~~st~~~~~~~~~~~~l-~~~~~~~ldapv~g~~ 133 (178)
T d1pgja2 78 AGAATDSTIEQLKKVFEKGD-ILVDTGNAHFKDQGRRAQQL-EAAGLRFLGMGISGGE 133 (178)
T ss_dssp CSHHHHHHHHHHHHHCCTTC-EEEECCCCCHHHHHHHHHHH-HTTTCEEEEEEEESHH
T ss_pred Ccchhhhhhhhhhhhccccc-eecccCccchhHHHHHHHHH-hhcceeEecccccCCc
Confidence 22344566777888888877 33333333333344555555 8899999888776543
|