Citrus Sinensis ID: 046660

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470----
LNFTIQNFRFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEINVDAEEKTAWVQAGATLGQLYYRIAEGSKNLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLDRKSMGEDLFWAIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRTMKQNATKIVHEWQYIANKLHEGLFIDVVLIRANSTMVAAFTSLFLGGIDRLLPLMQESFPELGLKKEDCTEMSWIESAHTLAGFQKEEPLHFLLDRNSSSSKGFFKAKSDYVKQPIPESAFEGIYDRFAEEEGQSAVIALIPYGGKMNEISESEIPFPHRAGNIYKILYLVAWGEDGASQRYINWIRKLYGYTTPYVSNNPREAYLNYRDLDIGTNNHGYTSYKQASIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSILPLPSRAPKKIGA
cccccccccccccccccccEEEEcccHHHHHHHHHHHHHcccEEEEEcccccccccccccccccEEEEEccccccEEEcccccEEEEcccccHHHHHHHHHHccccEEEccccccccccccccccccHHHHHHHHcccccEEEEEEEEEccccEEEccccccccEEEEEccccccEEEEEEEEEEEEccccEEEEEEEEccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccEEEEEEEEEccHHHHHHHHHHccccccccccccccccHHHHHHHHcccccccHHHHcccccccccccccEEEcccccccccHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHccccccccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
ccccccccccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEcccccccccEEEcccccEEEEEcHHcccEEEEcccccEEEEccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHcccHHEEEEccccccEEEEEEEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHHcccccEEEEEEEEccccEEEEEEEEEEcccHHHHHHHHHHHccHccccHccHHEHHHHHHHHHHccccccccHHHHHccccccccHHHccccccccccccHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccEEEEEEEEEEcccccHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccccHHHHcccc
lnftiqnfrfstantpkpqviitplhVSHVQAAIKCSQKHGLQIrirsgghdfeglsyvsdhvPFVIIDLIKlseinvdaeeKTAWVQAGATLGQLYYRIAegsknlgfpagschtvgvgghfsgggyGFMMRKFGLAADHVVDAHLVDAEGRLLDRKSMGEDLFWAirggggasFGVVVAWKVRLVTVPSTVTLFTVIRTMKQNATKIVHEWQYIANKLHEGLFIDVVLIRANSTMVAAFTSLFLGGIdrllplmqesfpelglkkedctemswIESAhtlagfqkeeplhflldrnsssskgffkaksdyvkqpipesafeGIYDRFAEEEGQSAVIALIpyggkmneiseseipfphragnIYKILYLVAwgedgasqRYINWIRKLYgyttpyvsnnpreaylnyrdldigtnnhgytsykqasiWGKKYFKNNFDRLVHVKttvdphnffrneqsilplpsrapkkiga
lnftiqnfrfstantpkpqvIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEINVDAEEKTAWVQAGATLGQLYYRIAEGSKNLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLDRKSMGEDLFWAIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRTMKQNATKIVHEWQYIANKLHEGLFIDVVLIRANSTMVAAFTSLFLGGIDRLLPLMQESFPELGLKKEDCTEMSWIESAHTLAGFQKEEPLHFLLDRNSSSSKGFFKAKSDYVKQPIPESAFEGIYDRFAEEEGQSAVIALIPYGGKMNEISESEIPFPHRAGNIYKILYLVAWGEDGASQRYINWIRKLYGYTTPYVSNNPREAYLNYRDLDIGTNNHGYTSYKQASIWGKKYFKNNFDRLVHVKTtvdphnffrneqsilplpsrapkkiga
LNFTIQNFRFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEINVDAEEKTAWVQAGATLGQLYYRIAEGSKNLGFPAGSCHTVgvgghfsgggygFMMRKFGLAADHVVDAHLVDAEGRLLDRKSMGEDLFWairggggasfgvvvaWKVRLVTVPSTVTLFTVIRTMKQNATKIVHEWQYIANKLHEGLFIDVVLIRANSTMVAAFTSLFLGGIDRLLPLMQESFPELGLKKEDCTEMSWIESAHTLAGFQKEEPLHFLLDRNsssskgffkaksDYVKQPIPESAFEGIYDRFAEEEGQSAVIALIPYGGKMNEISESEIPFPHRAGNIYKILYLVAWGEDGASQRYINWIRKLYGYTTPYVSNNPREAYLNYRDLDIGTNNHGYTSYKQASIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSILPLPSRAPKKIGA
******NFRFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEINVDAEEKTAWVQAGATLGQLYYRIAEGSKNLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLDRKSMGEDLFWAIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRTMKQNATKIVHEWQYIANKLHEGLFIDVVLIRANSTMVAAFTSLFLGGIDRLLPLMQESFPELGLKKEDCTEMSWIESAHTLAGFQ**********************************AFEGIYDRFAEEEGQSAVIALIPYGGKMNEISESEIPFPHRAGNIYKILYLVAWGEDGASQRYINWIRKLYGYTTPYVSNNPREAYLNYRDLDIGTNNHGYTSYKQASIWGKKYFKNNFDRLVHVKTTVDPHNFFR******************
LNFTIQNFRFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEINVDAEEKTAWVQAGATLGQLYYRIAEGSKNLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLDRKSMGEDLFWAIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRTMKQNATKIVHEWQYIANKLHEGLFIDVVLIRANSTMVAAFTSLFLGGIDRLLPLMQESFPELGLKKEDCTEMSWIESAHTLAGFQKEEPLHFLLDRNSSSSKGFFKAKSDYVKQPIPESAFEGIYDRFAEEEGQSAVIALIPYGGKMNEISESEIPFPHRAGNIYKILYLVAWGEDGASQRYINWIRKLYGYTTPYVSNNPREAYLNYRDLDIGTNNHGYTSYKQASIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQS**************
LNFTIQNFRFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEINVDAEEKTAWVQAGATLGQLYYRIAEGSKNLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLDRKSMGEDLFWAIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRTMKQNATKIVHEWQYIANKLHEGLFIDVVLIRANSTMVAAFTSLFLGGIDRLLPLMQESFPELGLKKEDCTEMSWIESAHTLAGFQKEEPLHFLLDRNSSSSKGFFKAKSDYVKQPIPESAFEGIYDRFAEEEGQSAVIALIPYGGKMNEISESEIPFPHRAGNIYKILYLVAWGEDGASQRYINWIRKLYGYTTPYVSNNPREAYLNYRDLDIGTNNHGYTSYKQASIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSILPLPS********
****IQNFRFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEINVDAEEKTAWVQAGATLGQLYYRIAEGSKNLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLDRKSMGEDLFWAIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRTMKQNATKIVHEWQYIANKLHEGLFIDVVLIRANSTMVAAFTSLFLGGIDRLLPLMQESFPELGLKKEDCTEMSWIESAHTLAGFQKEEPLHFLLDRNSSSSKGFFKAKSDYVKQPIPESAFEGIYDRFAEEEGQSAVIALIPYGGKMNEISESEIPFPHRAGNIYKILYLVAWGEDGASQRYINWIRKLYGYTTPYVSNNPREAYLNYRDLDIGTNNHGYTSYKQASIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSILPLPS********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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LNFTIQNFRFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEINVDAEEKTAWVQAGATLGQLYYRIAEGSKNLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLDRKSMGEDLFWAIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRTMKQNATKIVHEWQYIANKLHEGLFIDVVLIRANSTMVAAFTSLFLGGIDRLLPLMQESFPELGLKKEDCTEMSWIESAHTLAGFQKEEPLHFLLDRNSSSSKGFFKAKSDYVKQPIPESAFEGIYDRFAEEEGQSAVIALIPYGGKMNEISESEIPFPHRAGNIYKILYLVAWGEDGASQRYINWIRKLYGYTTPYVSNNPREAYLNYRDLDIGTNNHGYTSYKQASIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSILPLPSRAPKKIGA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query474 2.2.26 [Sep-21-2011]
A6P6W0545 Cannabidiolic acid syntha N/A no 0.981 0.853 0.553 1e-144
A6P6W1545 Cannabidiolic acid syntha N/A no 0.981 0.853 0.547 1e-143
A6P6V9544 Cannabidiolic acid syntha N/A no 0.974 0.849 0.547 1e-143
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.968 0.842 0.547 1e-141
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.968 0.842 0.547 1e-141
Q9SVG4570 Reticuline oxidase-like p no no 0.964 0.801 0.497 1e-115
P30986538 Reticuline oxidase OS=Esc N/A no 0.964 0.849 0.437 2e-97
P93479535 Reticuline oxidase OS=Pap N/A no 0.966 0.856 0.417 6e-95
O06997447 Uncharacterized FAD-linke yes no 0.858 0.910 0.280 1e-22
Q796Y5451 Uncharacterized FAD-linke no no 0.854 0.898 0.259 1e-22
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function desciption
 Score =  513 bits (1320), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 267/482 (55%), Positives = 343/482 (71%), Gaps = 17/482 (3%)

Query: 1   LNFTIQNFRFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVS 60
           LN TIQN RF++  TPKP VIITPL+VSH+Q  I CS+K GLQIR RSGGHD EG+SY+S
Sbjct: 64  LNSTIQNLRFTSDTTPKPLVIITPLNVSHIQGTILCSKKVGLQIRTRSGGHDAEGMSYIS 123

Query: 61  DHVPFVIIDLIKLSEINVDAEEKTAWVQAGATLGQLYYRIAEGSKNLGFPAGSCHTVGVG 120
             VPFVI+DL  +  + +D   +TAWV+AGATLG++YY I E ++NL FPAG C TVG G
Sbjct: 124 -QVPFVIVDLRNMHSVKIDVHSQTAWVEAGATLGEVYYWINENNENLSFPAGYCPTVGAG 182

Query: 121 GHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLDRKSMGEDLFWAIRGGGGASFGVVV 180
           GHFSGGGYG +MR +GLAAD+++DAHLV+ +G++LDRKSMGEDLFWAIRGGGG +FG++ 
Sbjct: 183 GHFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIA 242

Query: 181 AWKVRLVTVPSTVTLFTVIRTMK-QNATKIVHEWQYIANKLHEGLFIDVVLIRAN----- 234
           AWK+RLV VPS  T+F+V + M+     K+V++WQ IA    + L +    I  N     
Sbjct: 243 AWKIRLVAVPSMSTIFSVKKNMEIHELVKLVNKWQNIAYMYEKELLLFTHFITRNITDNQ 302

Query: 235 ----STMVAAFTSLFLGGIDRLLPLMQESFPELGLKKEDCTEMSWIESAHTLAGFQKEEP 290
               +T+ + F+S+F GG+D L+ LM +SFPELG+KK DC ++SWI++    +G      
Sbjct: 303 GKNKTTIHSYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKQLSWIDTIIFYSGVVNYNT 362

Query: 291 LHF----LLDRNSSSSKGFFKAKSDYVKQPIPESAFEGIYDRFAEEEGQSAVIALIPYGG 346
            +F    LLDR S   K  F  K DYVK+PIPE+A   I ++  EE+    +    PYGG
Sbjct: 363 TYFKKEILLDR-SGGRKAAFSIKLDYVKKPIPETAMVTILEKLYEEDVGVGMFVFYPYGG 421

Query: 347 KMNEISESEIPFPHRAGNIYKILYLVAWGEDGASQRYINWIRKLYGYTTPYVSNNPREAY 406
            M+EISES IPFPHRAG +Y+I Y+ +W +   ++++INWIR +Y +TTPYVS NPR AY
Sbjct: 422 IMDEISESAIPFPHRAGIMYEIWYIASWEKQEDNEKHINWIRNVYNFTTPYVSQNPRMAY 481

Query: 407 LNYRDLDIG-TNNHGYTSYKQASIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSILPLP 465
           LNYRDLD+G TN     +Y QA IWG+KYF  NF+RLV VKT VDP NFFRNEQSI PLP
Sbjct: 482 LNYRDLDLGKTNFESPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPDNFFRNEQSIPPLP 541

Query: 466 SR 467
            R
Sbjct: 542 LR 543
Has no cannabidiolic acid synthase activity.
Cannabis sativa (taxid: 3483)
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query474
224115242527 predicted protein [Populus trichocarpa] 0.978 0.880 0.666 1e-180
224122382534 predicted protein [Populus trichocarpa] 0.978 0.868 0.667 1e-177
224122386533 predicted protein [Populus trichocarpa] 0.978 0.870 0.662 1e-176
224122378535 predicted protein [Populus trichocarpa] 0.978 0.867 0.661 1e-175
224056831533 predicted protein [Populus trichocarpa] 0.976 0.868 0.663 1e-175
224110866533 predicted protein [Populus trichocarpa] 0.978 0.870 0.662 1e-175
224103509531 predicted protein [Populus trichocarpa] 0.978 0.873 0.641 1e-174
224108834533 predicted protein [Populus trichocarpa] 0.978 0.870 0.660 1e-174
224056789476 predicted protein [Populus trichocarpa] 0.974 0.970 0.641 1e-173
224108830533 predicted protein [Populus trichocarpa] 0.978 0.870 0.658 1e-173
>gi|224115242|ref|XP_002332196.1| predicted protein [Populus trichocarpa] gi|222875303|gb|EEF12434.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  639 bits (1648), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 318/477 (66%), Positives = 383/477 (80%), Gaps = 13/477 (2%)

Query: 1   LNFTIQNFRFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVS 60
           L F+IQN RF+T++TPKP VI+TP ++SH+QAAI CSQKHG+QIRIRSGGHD+EGLSYVS
Sbjct: 52  LQFSIQNLRFNTSSTPKPLVIVTPTNISHIQAAIICSQKHGMQIRIRSGGHDYEGLSYVS 111

Query: 61  DHVPFVIIDLIKLSEINVDAEEKTAWVQAGATLGQLYYRIAEGSKNLGFPAGSCHTVGVG 120
               FV+IDLI L  INV+AE KTAWVQ+G T+G++YYRIAE S+ L FPA  C TVGVG
Sbjct: 112 T-FSFVVIDLINLRTINVNAENKTAWVQSGVTIGEVYYRIAEKSRTLAFPASVCPTVGVG 170

Query: 121 GHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLDRKSMGEDLFWAIRGGGGASFGVVV 180
           GHFSGGGYG +MRK+GLAADH++DA LVD +GR+LDR+SMGEDLFWAIRGGGG +FGVV+
Sbjct: 171 GHFSGGGYGMLMRKYGLAADHIIDAQLVDVKGRILDRESMGEDLFWAIRGGGGNTFGVVI 230

Query: 181 AWKVRLVTVPSTVTLFTVIRTMKQNATKIVHEWQYIANKLHEGLFIDVVLIRANS----- 235
           AWK+ LV+ P TVT+F V RT++QNA+K+VH WQ++A+KLHE LFI ++L R NS     
Sbjct: 231 AWKISLVSAPPTVTVFNVQRTLEQNASKLVHRWQFVADKLHEDLFIRIILNRVNSTEEGK 290

Query: 236 ---TMVAAFTSLFLGGIDRLLPLMQESFPELGLKKEDCTEMSWIESAHTLAGFQKEEPLH 292
              T+ A+F SLFLGGIDRLLPL+Q+SFPELGL KEDC EMSWI+S     GF     L 
Sbjct: 291 SNTTIQASFNSLFLGGIDRLLPLIQDSFPELGLVKEDCIEMSWIQSVLYFDGFPSNSSLD 350

Query: 293 FLLDRNSSSSKGFFKAKSDYVKQPIPESAFEGIYDRFAEEEGQSAVIALIPYGGKMNEIS 352
            LLDR  S+ +  FKAKSDYVK+PIPE   EGI++RF +++  + ++   PYGGKM+EIS
Sbjct: 351 VLLDRTPSTRRN-FKAKSDYVKEPIPELGLEGIWERFFDKDINTPILIFSPYGGKMSEIS 409

Query: 353 ESEIPFPHRAGNIYKILYLVAWGEDG--ASQRYINWIRKLYGYTTPYVSNNPREAYLNYR 410
           ES IPFPHRAGNIYKI +L+ W E+G  A++R+I+WIR+LY Y  PYVS  PR AY+NYR
Sbjct: 410 ESSIPFPHRAGNIYKIQHLIYWDEEGIVATKRHISWIRRLYSYLAPYVSKTPRAAYVNYR 469

Query: 411 DLDIGTNNH-GYTSYKQASIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSILPLPS 466
           DLDIG NNH G TSY+QASIWG KYFKNNFDRLV VKT VDP NFFRNEQSI PL S
Sbjct: 470 DLDIGINNHAGNTSYRQASIWGLKYFKNNFDRLVRVKTAVDPANFFRNEQSIPPLSS 526

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224122382|ref|XP_002330609.1| predicted protein [Populus trichocarpa] gi|222872167|gb|EEF09298.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122386|ref|XP_002330610.1| predicted protein [Populus trichocarpa] gi|222872168|gb|EEF09299.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122378|ref|XP_002330608.1| predicted protein [Populus trichocarpa] gi|222872166|gb|EEF09297.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056831|ref|XP_002299045.1| predicted protein [Populus trichocarpa] gi|222846303|gb|EEE83850.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224110866|ref|XP_002333020.1| predicted protein [Populus trichocarpa] gi|222834634|gb|EEE73097.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224103509|ref|XP_002334045.1| predicted protein [Populus trichocarpa] gi|222839749|gb|EEE78072.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224108834|ref|XP_002333339.1| predicted protein [Populus trichocarpa] gi|222836259|gb|EEE74680.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056789|ref|XP_002299024.1| predicted protein [Populus trichocarpa] gi|222846282|gb|EEE83829.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224108830|ref|XP_002333338.1| predicted protein [Populus trichocarpa] gi|222836258|gb|EEE74679.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query474
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.976 0.855 0.501 2.5e-120
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.974 0.860 0.487 4.1e-120
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.955 0.851 0.479 3.8e-117
TAIR|locus:2158700532 AT5G44360 [Arabidopsis thalian 0.962 0.857 0.482 8.2e-115
TAIR|locus:2163411535 AT5G44410 [Arabidopsis thalian 0.959 0.850 0.467 8.2e-115
TAIR|locus:2163441533 AT5G44440 [Arabidopsis thalian 0.978 0.870 0.466 2.2e-114
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.976 0.854 0.477 2.8e-114
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.959 0.855 0.462 4.5e-114
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.957 0.850 0.457 1.6e-111
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.962 0.860 0.456 4.3e-109
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1184 (421.8 bits), Expect = 2.5e-120, P = 2.5e-120
 Identities = 237/473 (50%), Positives = 304/473 (64%)

Query:     1 LNFTIQNFRFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVS 60
             L  T QN +F   + PKP  I  P+H S VQA+I CS+K G+  R+RSGGHDFE LSYVS
Sbjct:    70 LESTAQNLQFLAKSMPKPGFIFRPIHQSQVQASIICSKKLGIHFRVRSGGHDFEALSYVS 129

Query:    61 D-HVPFVIIDLIKLSEINVDAEEKTAWVQAGATLGQLYYRIAEGSKNLGFPAGSCHTVXX 119
                 PF+++DL KL +INVD E  +AWVQ GATLG+LYYRIAE SK  GFPAG C +V  
Sbjct:   130 RIEKPFILLDLSKLKQINVDIESNSAWVQPGATLGELYYRIAEKSKIHGFPAGLCTSVGI 189

Query:   120 XXXXXXXXXXFMMRKFGLAADHVVDAHLVDAEGRLLDRKSMGEDLFWXXXXXXXXXXXXX 179
                        +MRK+GLA D+V+D  +VDA G+LLDR +MGEDLFW             
Sbjct:   190 GGYMTGGGYGTLMRKYGLAGDNVLDVKMVDANGKLLDRAAMGEDLFWAIRGGGGASFGIV 249

Query:   180 XXWKVRLVTVPSTVTLFTVIRTMKQNAT-KIVHEWQYIANKLHEGLFIDVVLIRA----N 234
               WK++LV VP TVT+FTV +T++Q+A  K + +WQ I++K+ E + I VVL  A    N
Sbjct:   250 LAWKIKLVPVPKTVTVFTVTKTLEQDARLKTISKWQQISSKIIEEIHIRVVLRAAGNDGN 309

Query:   235 STMVAAFTSLFLGGIDRLLPLMQESFPELGLKKEDCTEMSWIESAHTLAGFQKEEPLHFL 294
              T+   +   FLG    LL +M+++FPELGL ++DCTEMSWIE+A    GF    P+  L
Sbjct:   310 KTVTMTYLGQFLGEKGTLLKVMEKAFPELGLTQKDCTEMSWIEAALFHGGFPTGSPIEIL 369

Query:   295 LDRNXXXXXXXXXXXXDYVKQPIPESAFEGIYDRFAEEEGQSAVIALIPYGGKMNEISES 354
             L               D+VK+PIP    +GI+ R  E  G +  +   PYGG M++I ES
Sbjct:   370 LQLKSPLGKDYFKATSDFVKEPIPVIGLKGIFKRLIE--GNTTFLNWTPYGGMMSKIPES 427

Query:   355 EIPFPHRAGNIYKILYLVAWGE-DGASQRYINWIRKLYGYTTPYVSNNPREAYLNYRDLD 413
              IPFPHR G ++KILY   W E D  S R INWI+++Y Y  PYVS+NPR+AY+NYRDLD
Sbjct:   428 AIPFPHRNGTLFKILYYANWLENDKTSSRKINWIKEIYNYMAPYVSSNPRQAYVNYRDLD 487

Query:   414 IGTN-NHGYTSYKQASIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSILPLP 465
              G N N+   ++ +A IWG KYFK NFDRLV +KT VDP NFFR+EQSI P+P
Sbjct:   488 FGQNKNNAKVNFIEAKIWGPKYFKGNFDRLVKIKTKVDPENFFRHEQSIPPMP 540
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
GO:0006979 "response to oxidative stress" evidence=IEP
GO:0009506 "plasmodesma" evidence=IDA
GO:0010167 "response to nitrate" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158700 AT5G44360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163411 AT5G44410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163441 AT5G44440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GTB6THCAS_CANSA1, ., 2, 1, ., 3, ., 70.54750.96830.8422N/Ano
A6P6W0CASL1_CANSANo assigned EC number0.55390.98100.8532N/Ano
A6P6W1CASL2_CANSANo assigned EC number0.54770.98100.8532N/Ano
Q33DQ2THCAI_CANSANo assigned EC number0.54750.96830.8422N/Ano
A6P6V9CBDAS_CANSA1, ., 2, 1, ., 3, ., 80.54790.97460.8492N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.202.20.1
hypothetical protein (503 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 3e-33
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 4e-24
pfam0803145 pfam08031, BBE, Berberine and berberine like 2e-17
TIGR01678438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 8e-04
COG0812291 COG0812, MurB, UDP-N-acetylmuramate dehydrogenase 0.001
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score =  122 bits (308), Expect = 3e-33
 Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 4/140 (2%)

Query: 18  PQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEI- 76
           P  ++ P     V A ++ + ++GL + +R GG    G + ++  V   ++DL +L+ I 
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVLTGGV---VLDLSRLNGIL 57

Query: 77  NVDAEEKTAWVQAGATLGQLYYRIAEGSKNLGFPAGSCHTVGVGGHFSGGGYGFMMRKFG 136
            +D E+ TA V+AG TLG L   +A     LG   GS     VGG  +  G G+   ++G
Sbjct: 58  EIDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSERYG 117

Query: 137 LAADHVVDAHLVDAEGRLLD 156
           L  D+V+   +V A+G ++ 
Sbjct: 118 LTRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information
>gnl|CDD|223882 COG0812, MurB, UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 474
PLN02441525 cytokinin dehydrogenase 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
KOG1231505 consensus Proteins containing the FAD binding doma 99.97
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.97
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.97
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.97
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.95
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.92
PRK11183564 D-lactate dehydrogenase; Provisional 99.88
KOG1232511 consensus Proteins containing the FAD binding doma 99.87
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.87
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.87
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.86
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.85
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.85
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.84
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.77
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.76
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.68
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.68
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.65
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.6
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.59
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.56
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.53
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.36
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 98.95
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 96.79
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 94.77
PRK09799258 putative oxidoreductase; Provisional 94.32
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 93.42
PLN00107257 FAD-dependent oxidoreductase; Provisional 93.18
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 91.17
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 89.53
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 89.5
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 88.59
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 88.56
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 86.65
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=4.2e-41  Score=345.42  Aligned_cols=190  Identities=20%  Similarity=0.330  Sum_probs=169.1

Q ss_pred             ccccCCCCCCCCccEEEEcCCHHHHHHHHHHHH--HcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCc-------e
Q 046660            6 QNFRFSTANTPKPQVIITPLHVSHVQAAIKCSQ--KHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSE-------I   76 (474)
Q Consensus         6 ~~~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~--~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~-------i   76 (474)
                      +...|.......|.+|++|+|++||+++|++|+  ++++++++||+|||+.|.+...+   +++|||++||+       +
T Consensus        53 ~s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~---GivIdms~Ln~i~~~~~ii  129 (525)
T PLN02441         53 ASKDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG---GVVVDMRSLRGGVRGPPVI  129 (525)
T ss_pred             HhcCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC---eEEEECCCCCCcCccCceE
Confidence            456788877889999999999999999999997  67999999999999998877655   89999999999       3


Q ss_pred             EEcCCCCEEEEcCCCcHHHHHHHHHhcCCceeec-CCCCCcccccccccCCCCCCccccccccccceeEEEEEccCCcEE
Q 046660           77 NVDAEEKTAWVQAGATLGQLYYRIAEGSKNLGFP-AGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLL  155 (474)
Q Consensus        77 ~~d~~~~~~~v~~G~~~~~~~~~l~~~~~~~~~~-~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~  155 (474)
                      ++|.+..+|+|++|++|.|+++++.++|  ++.+ .+.+..+++||.+.+||+|..+.+||..+|+|+++|||++||+++
T Consensus       130 ~vd~~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv  207 (525)
T PLN02441        130 VVSGDGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVV  207 (525)
T ss_pred             EEcCCCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEE
Confidence            7889999999999999999999999986  4332 345567889999999999999999999999999999999999999


Q ss_pred             e-ccCCCchhhhhhccccCcceeEEEEEEEEEeecCceEEEEEEEec
Q 046660          156 D-RKSMGEDLFWAIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRT  201 (474)
Q Consensus       156 ~-~~~~~~dl~~a~rG~g~~~fGvvt~~~~~~~p~~~~~~~~~~~~~  201 (474)
                      + ++++|+|||||++||+ |+|||||++++|++|.|+......+.|.
T Consensus       208 ~~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~  253 (525)
T PLN02441        208 TCSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYS  253 (525)
T ss_pred             EeCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcC
Confidence            6 7778999999999988 7999999999999999997666566554

>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-131
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-110
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 1e-104
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 5e-93
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 8e-93
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 8e-93
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 9e-93
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 8e-92
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-91
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-91
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 1e-19
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 2e-13
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 5e-10
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 2e-08
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 3e-09
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 2e-07
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 3e-07
1dii_A521 Crystal Structure Of P-Cresol Methylhydroxylase At 2e-04
1wve_A520 P-Cresol Methylhydroxylase: Alteration Of The Struc 2e-04
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  465 bits (1197), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 239/484 (49%), Positives = 312/484 (64%), Gaps = 25/484 (5%)
Query: 1   LNFTIQNFRFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVS 60
           LN TIQN RF +  TPKP VI+TP + SH+QA I CS+K GLQIR RSGGHD EG+SY+S
Sbjct: 37  LNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYIS 96
Query: 61  DHVPFVIIDLIKLSEINVDAEEKTAWVQAGATLGQLYYRIAEGSKNLGFPAGSCHTVXXX 120
             VPFV++DL  +  I +D   +TAWV+AGATLG++YY I E ++NL FP G C TV   
Sbjct: 97  -QVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVG 155
Query: 121 XXXXXXXXXFMMRKFGLAADHVVDAHLVDAEGRLLDRKSMGEDLFWXXXXXXXXXXXXXX 180
                     +MR +GLAAD+++DAHLV+ +G++LDRKSMGEDLFW              
Sbjct: 156 GHFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIA 215
Query: 181 XWKVRLVTVPSTVTLFTVIRTMK-QNATKIVHEWQYIANKLHEGLFIDVVLIRAN----- 234
            WK++LV VPS  T+F+V + M+     K+ ++WQ IA K  + L +    I  N     
Sbjct: 216 AWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNH 275
Query: 235 ----STMVAAFTSLFLGGIDRLLPLMQESFPELGLKKEDCTEMSWIESA--------HTL 282
               +T+   F+S+F GG+D L+ LM +SFPELG+KK DC E SWI++            
Sbjct: 276 GKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNT 335
Query: 283 AGFQKEEPLHFLLDRNXXXXXXXXXXXXDYVKQPIPESAFEGIYDRFAEEEGQSAVIALI 342
           A F+KE     LLDR+            DYVK+PIPE+A   I ++  EE+  + +  L 
Sbjct: 336 ANFKKE----ILLDRS-AGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLY 390
Query: 343 PYGGKMNEISESEIPFPHRAGNIYKILYLVAWGEDGASQRYINWIRKLYGYTTPYVSNNP 402
           PYGG M EISES IPFPHRAG +Y++ Y  +W +   ++++INW+R +Y +TTPYVS NP
Sbjct: 391 PYGGIMEEISESAIPFPHRAGIMYELWYTASWEKQEDNEKHINWVRSVYNFTTPYVSQNP 450
Query: 403 REAYLNYRDLDIGTNNHGY-TSYKQASIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSI 461
           R AYLNYRDLD+G  NH    +Y QA IWG+KYF  NF+RLV VKT VDP+NFFRNEQSI
Sbjct: 451 RLAYLNYRDLDLGKTNHASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSI 510
Query: 462 LPLP 465
            PLP
Sbjct: 511 PPLP 514
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A Resolution Length = 521 Back     alignment and structure
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of The Flavoprotein Subunit Upon Its Binding To The Cytochrome Subunit Length = 520 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 0.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 0.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-174
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-174
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-174
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-174
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-174
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-169
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-125
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 3e-52
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 1e-46
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 1e-21
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 8e-21
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 2e-16
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 3e-15
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 1e-07
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 3e-07
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 2e-05
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 2e-04
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 5e-04
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  569 bits (1468), Expect = 0.0
 Identities = 262/482 (54%), Positives = 338/482 (70%), Gaps = 17/482 (3%)

Query: 1   LNFTIQNFRFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVS 60
           LN TIQN RF +  TPKP VI+TP + SH+QA I CS+K GLQIR RSGGHD EG+SY+S
Sbjct: 37  LNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYIS 96

Query: 61  DHVPFVIIDLIKLSEINVDAEEKTAWVQAGATLGQLYYRIAEGSKNLGFPAGSCHTVGVG 120
             VPFV++DL  +  I +D   +TAWV+AGATLG++YY I E ++NL FP G C TVGVG
Sbjct: 97  Q-VPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVG 155

Query: 121 GHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLDRKSMGEDLFWAIRGGGGASFGVVV 180
           GHFSGGGYG +MR +GLAAD+++DAHLV+ +G++LDRKSMGEDLFWAIRGGGG +FG++ 
Sbjct: 156 GHFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIA 215

Query: 181 AWKVRLVTVPSTVTLFTVIRTMK-QNATKIVHEWQYIANKLHEGLFIDVVLIRAN----- 234
           AWK++LV VPS  T+F+V + M+     K+ ++WQ IA K  + L +    I  N     
Sbjct: 216 AWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNH 275

Query: 235 ----STMVAAFTSLFLGGIDRLLPLMQESFPELGLKKEDCTEMSWIESAHTLAGFQK--- 287
               +T+   F+S+F GG+D L+ LM +SFPELG+KK DC E SWI++    +G      
Sbjct: 276 GKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNT 335

Query: 288 -EEPLHFLLDRNSSSSKGFFKAKSDYVKQPIPESAFEGIYDRFAEEEGQSAVIALIPYGG 346
                  LLDR S+  K  F  K DYVK+PIPE+A   I ++  EE+  + +  L PYGG
Sbjct: 336 ANFKKEILLDR-SAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGG 394

Query: 347 KMNEISESEIPFPHRAGNIYKILYLVAWGEDGASQRYINWIRKLYGYTTPYVSNNPREAY 406
            M EISES IPFPHRAG +Y++ Y  +W +   ++++INW+R +Y +TTPYVS NPR AY
Sbjct: 395 IMEEISESAIPFPHRAGIMYELWYTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAY 454

Query: 407 LNYRDLDIGTNNH-GYTSYKQASIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSILPLP 465
           LNYRDLD+G  NH    +Y QA IWG+KYF  NF+RLV VKT VDP+NFFRNEQSI PLP
Sbjct: 455 LNYRDLDLGKTNHASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 514

Query: 466 SR 467
             
Sbjct: 515 PH 516
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Length = 571 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query474
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 100.0
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 100.0
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.98
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.97
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.96
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.96
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.96
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.93
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.92
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.91
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.9
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.87
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.82
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 97.82
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 96.87
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 96.46
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 93.08
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 92.66
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 91.78
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 85.94
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 85.86
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 85.02
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=7e-88  Score=699.85  Aligned_cols=462  Identities=56%  Similarity=1.012  Sum_probs=400.6

Q ss_pred             cccccccCCCCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCceEEcCCC
Q 046660            3 FTIQNFRFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEINVDAEE   82 (474)
Q Consensus         3 ~~~~~~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i~~d~~~   82 (474)
                      ++.+|.||+.....+|.+||+|+|++||+++|++|+++++++.||||||++.+.+...+ .++++|||++|++|++|+++
T Consensus        39 ~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~vrggGh~~~g~~~~~~-~~gvvIdl~~l~~i~vd~~~  117 (518)
T 3vte_A           39 STIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQ-VPFVVVDLRNMHSIKIDVHS  117 (518)
T ss_dssp             HTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEEEESSCCCTTCTTTCCS-SSEEEEECTTCCCEEEETTT
T ss_pred             hhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCCccCCC-CCeEEEECCCCceeEEeCCC
Confidence            45789999998899999999999999999999999999999999999999988774221 13899999999999999999


Q ss_pred             CEEEEcCCCcHHHHHHHHHhcCCceeecCCCCCcccccccccCCCCCCccccccccccceeEEEEEccCCcEEeccCCCc
Q 046660           83 KTAWVQAGATLGQLYYRIAEGSKNLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLDRKSMGE  162 (474)
Q Consensus        83 ~~~~v~~G~~~~~~~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~~~~~~  162 (474)
                      .+++||+|+++++|+++|.+++++|.+++|.|++|||||+++|||+|+++++||+.+|+|++++||++||++++.+.+|+
T Consensus       118 ~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~gGg~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~  197 (518)
T 3vte_A          118 QTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGE  197 (518)
T ss_dssp             TEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHTCCCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCH
T ss_pred             CEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCCCCCccccCCCCchhheEEEEEEEccCCeEEEeecccc
Confidence            99999999999999999999887899999999999999999999999999999999999999999999999997545689


Q ss_pred             hhhhhhccccCcceeEEEEEEEEEeecCceEEEEEEEecch-HHHHHHHHHHHHHHHhhccCceEEEEEEec--------
Q 046660          163 DLFWAIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRTMK-QNATKIVHEWQYIANKLHEGLFIDVVLIRA--------  233 (474)
Q Consensus       163 dl~~a~rG~g~~~fGvvt~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--------  233 (474)
                      |||||+||||+|+|||||+++||++|.|+.++.+.+.+.+. +++.+++..|+++.+.+|+++++.+.+...        
T Consensus       198 DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~  277 (518)
T 3vte_A          198 DLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGK  277 (518)
T ss_dssp             HHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHHHHHHHHHHHHHHGGGSCTTEEEEEEEEEESCC-----
T ss_pred             chhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHHHHHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCc
Confidence            99999999866899999999999999998887888877654 567889999999999999999998876531        


Q ss_pred             -CCceEEEEEEEEeCCccchhhhhhhccCcCCCCcCcccccchHHHHHhhcccCCC-Cc---chhcccCCCCCCCCcccc
Q 046660          234 -NSTMVAAFTSLFLGGIDRLLPLMQESFPELGLKKEDCTEMSWIESAHTLAGFQKE-EP---LHFLLDRNSSSSKGFFKA  308 (474)
Q Consensus       234 -~~~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~  308 (474)
                       +..+.+.+.++|+|+.+++.+.|.+.+++++....++.+++|.+.+.+++..+.+ .+   ++.++++... ...+||.
T Consensus       278 ~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~k~  356 (518)
T 3vte_A          278 NKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAG-KKTAFSI  356 (518)
T ss_dssp             --CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECHHHHHHHTSSSCCC-----CGGGGGCTTCS-CCBEEEE
T ss_pred             CCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecchhhhhhhhhcCCccCCccchhhhhccCCcC-cccceee
Confidence             1235678889999999999888888777787666778899999998888765543 33   4555555433 3456788


Q ss_pred             cccCcCCCCCHHHHHHHHHHHhhcCCCcEEEEEEecCCccCCCCCCCCCCccccCceEEEEEEEecCCCchhHHHHHHHH
Q 046660          309 KSDYVKQPIPESAFEGIYDRFAEEEGQSAVIALIPYGGKMNEISESEIPFPHRAGNIYKILYLVAWGEDGASQRYINWIR  388 (474)
Q Consensus       309 ~s~~~~~~l~~~~i~~i~~~~~~~~~~~~~i~~~~~GGai~~~~~~~tAf~~R~~~~~~v~~~~~W~d~~~d~~~~~w~~  388 (474)
                      ||.|+++++++++++.+++.+.+.+...+.+.+.++||+++++++++|||+||++..|.+++.+.|.++++++++.+|++
T Consensus       357 ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa~~~v~~~~TAf~hR~~~~~~~~~~~~w~~~~~~~~~~~w~~  436 (518)
T 3vte_A          357 KLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWEKQEDNEKHINWVR  436 (518)
T ss_dssp             EEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGGGGTSCTTSSSCCCCTTCCEEEEEEEEECCTTTHHHHHHHHH
T ss_pred             echhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCccccCCCCCCCcccccCcceEEEEEEEecCCcchhHHHHHHHH
Confidence            99999888999999999998876443358899999999999999999999999955899999999998888899999999


Q ss_pred             HHHhcccCCccCCCCcccccCCCCccC-CCCCCCcchhhhhhhhhhhccccHHHHHHhhhhcCCCCCccCCCCCCCCCC
Q 046660          389 KLYGYTTPYVSNNPREAYLNYRDLDIG-TNNHGYTSYKQASIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSILPLPS  466 (474)
Q Consensus       389 ~~~~~l~~~~~~~~~~~Y~Ny~d~d~~-~~~~~~~~~~~~~~~~~~yfg~n~~RL~~IK~kyDP~~vF~~~q~I~~~~~  466 (474)
                      ++++.|.|+.+..+.++|+||+|.+++ .+..++++++....|++.|||+||+||++||+||||+|||+++|||+|..+
T Consensus       437 ~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~~~~~~~~~~w~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~~  515 (518)
T 3vte_A          437 SVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPP  515 (518)
T ss_dssp             HHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTSCCCHHHHHHHHHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCCT
T ss_pred             HHHHHhccccCCCCccccccCCCccccccccccccchhhhhhHHHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCCCC
Confidence            999999998654567899999998876 332345566667789999999999999999999999999999999999754
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 474
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 9e-20
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 9e-17
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 7e-04
d1e8ga2268 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fung 0.001
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 85.4 bits (210), Expect = 9e-20
 Identities = 34/185 (18%), Positives = 61/185 (32%), Gaps = 9/185 (4%)

Query: 10  FSTANTPKPQVIITPLHVSHVQAAIKCSQKH---GLQIRIRSGGHDFEGLSYVSDHVPFV 66
           F    +  P  ++ P     + A +  +         I  R  GH   G ++    V   
Sbjct: 22  FGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVN 81

Query: 67  II---DLIKLSEINVDAEEKTAWVQAGATLGQLYYRIAEGSKNLGFPAGSCHTVGVGGHF 123
           +    D      INV A+ +            +                    + VGG  
Sbjct: 82  MASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSW-TDYLYLTVGGTL 140

Query: 124 SGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLD-RKSMGEDLFWAIRGGGGASFGVVVAW 182
           S  G      + G    +V++  ++   G ++   K +  DLF A+ GG G  FGV+   
Sbjct: 141 SNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRA 199

Query: 183 KVRLV 187
           ++ + 
Sbjct: 200 RIAVE 204
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query474
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 100.0
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.97
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.97
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.85
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.82
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.76
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 95.98
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 93.17
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 92.81
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 92.59
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 92.08
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 91.08
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 91.04
d1e8ga1287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 80.82
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=6.1e-39  Score=294.12  Aligned_cols=178  Identities=18%  Similarity=0.311  Sum_probs=160.0

Q ss_pred             ccccCCCCCCCCccEEEEcCCHHHHHHHHHHHHHc---CCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCce------
Q 046660            6 QNFRFSTANTPKPQVIITPLHVSHVQAAIKCSQKH---GLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEI------   76 (474)
Q Consensus         6 ~~~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~---~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i------   76 (474)
                      ....|.......|.+|++|+|++||+++|++|+++   ++|+++|||||++.+.+...+   +++|||++||+|      
T Consensus        18 ~~~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~~---~ividl~~l~~i~~~~~~   94 (206)
T d1w1oa2          18 ASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPG---GVVVNMASLGDAAAPPRI   94 (206)
T ss_dssp             TSCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCTT---SEEEEGGGGGCSSSSCSE
T ss_pred             hEECcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccCC---CEeeeccccceeeeceeE
Confidence            44556666678999999999999999999999997   689999999999998877665   899999999985      


Q ss_pred             EEcCCCCEEEEcCCCcHHHHHHHHHhcCCceeec-CCCCCcccccccccCCCCCCccccccccccceeEEEEEccCCcEE
Q 046660           77 NVDAEEKTAWVQAGATLGQLYYRIAEGSKNLGFP-AGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLL  155 (474)
Q Consensus        77 ~~d~~~~~~~v~~G~~~~~~~~~l~~~~~~~~~~-~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~  155 (474)
                      ++|++..+++||+|++|.||+++|.++|  +.++ .+.+..+++||++++||+|..+++||+.+|+|+++|+|++||+++
T Consensus        95 ~id~~~~~v~v~aG~~~~~l~~~l~~~G--l~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~  172 (206)
T d1w1oa2          95 NVSADGRYVDAGGEQVWIDVLRASLARG--VAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMV  172 (206)
T ss_dssp             EECTTSSEEEEETTCBHHHHHHHHHTTT--EEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEE
T ss_pred             EEecCCCEEEEEcceehhhhhhhhhccc--cccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEE
Confidence            6899999999999999999999999986  5544 344466789999999999999999999999999999999999999


Q ss_pred             e-ccCCCchhhhhhccccCcceeEEEEEEEEEeec
Q 046660          156 D-RKSMGEDLFWAIRGGGGASFGVVVAWKVRLVTV  189 (474)
Q Consensus       156 ~-~~~~~~dl~~a~rG~g~~~fGvvt~~~~~~~p~  189 (474)
                      + ++.+|+|||||+||++ |+|||||+++||++|+
T Consensus       173 ~~s~~~~~dl~~a~~g~~-G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         173 TCSKQLNADLFDAVLGGL-GQFGVITRARIAVEPA  206 (206)
T ss_dssp             EEESSSSHHHHHHHTTCT-TCSEEEEEEEEEEEEC
T ss_pred             EECCCCCHHHHHHHhhCC-CccEeEEEEEEEEEcC
Confidence            6 6678999999999998 7999999999999995
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure