Citrus Sinensis ID: 046682

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVIEGEKEWWEELQWEDQATQNAFSSGVVLGDDFH
Secondary Structure (PSIPRED)
ccccccccccccEEEEEcccccHHHHcccccccccEEEEEEEEccccccccccccccccccEEEEcccccccEEEccccccccccccccccccEEEEEcccccccccccHHcccccEEEEEccccccccccccccccccccccccccccccccEEEccccccccEEcccccccccccEEEEEcccccccccccccccccccEEEEccHHHHcccccccccccccccccEEcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcEEEEccHHHHHHHHccHHHHHHHHHHcHHccccccEEEcccHHHHcccEEEEEccccEEEEEEccccccccccccccccEEEEEcccccHHccHHHEEcccccEEEEcccHHHHHHHcccccccccccccccccccHHHEEEEHcccHHHHHHHccccccccccEEEEEccccccccccccccccccEEEEEccHHHHHHcccccHHHHHHccccEEEcHccc
Coil and Loop (DISEMBL)
mkellglkhlnvlswsfgSSLAVQKflkypklvsITQFVLVYHCKSAPFNLLHLAYMENLQeldledinleemkiDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKwgrnlksvypnplplpklkkiqvrgcpqlkklpvnsssvkeRRVVIEGEKEWWEELQWEDQATQNafssgvvlgddfh
Flexible Loop (DISEMBL)
mkellglkHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFqsgfrsldrvVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVypnplplpklkkIQVRGcpqlkklpvnsssvkerrVVIEGEKEWWEELQWEDQAtqnafssgvvlgddfh
Low Complexity Region (SEG)
MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNplplpklkkIQVRGCPQLKKLPVNSSSVKERRVVIEGEKEWWEELQWEDQATQNAFSSGVVLGDDFH
Disordered region (IsUnstruct)
***LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPV*****KERRVVIEGEKEWWEELQWEDQATQNAF***********
Disordered Region (DISOPRED)
MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPF**L*LAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKL************FFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKK***************EGEKEWWEELQWEDQATQNAFSSGVVLGDDFH
Disordered Region (DISEMBL)
MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLP*********RVVIEGEKEWWEELQWEDQATQNAFSSGVVLGDDFH
Disordered Region (DISPRO)
MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKL********SEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVIEGEKEWWEELQWEDQATQNAFSSGVVLGDDFH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVIEGEKEWWEELQWEDQATQNAFSSGVVLGDDFH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
O64973	889	Disease resistance protei	yes	no	0.936	0.248	0.372	2e-28
Q8RXS5	888	Probable disease resistan	no	no	0.872	0.231	0.322	4e-26
Q9FLB4	874	Putative disease resistan	no	no	0.944	0.255	0.319	7e-24
Q9C8T9	898	Putative disease resistan	no	no	0.898	0.236	0.329	1e-23
P60838	894	Probable disease resistan	no	no	0.851	0.224	0.354	6e-23
Q8L3R3	885	Disease resistance protei	no	no	0.864	0.230	0.342	3e-21
Q9LVT3	948	Probable disease resistan	no	no	0.872	0.217	0.306	4e-21
O64789	925	Probable disease resistan	no	no	0.885	0.225	0.331	1e-20
O23317	719	Probable disease resistan	no	no	0.724	0.237	0.355	2e-20
O22727	967	Probable disease resistan	no	no	0.911	0.222	0.338	1e-19

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  125 bits (315), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/231 (37%), Positives = 124/231 (53%), Gaps = 10/231 (4%)

Query: 1   MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENL 60
           +KEL  L+HL V++    SSL  +  L   +LV   + V   + K     +L L  M NL
Sbjct: 652 VKELQLLEHLEVITLDISSSLVAEPLLCSQRLVECIKEVDFKYLKEESVRVLTLPTMGNL 711

Query: 61  QELDLEDINLEEMKIDSTEEVKKLFQS----GFRSLDRVVISSCKKMKDLTWLVFVQILK 116
           ++L ++   + E+KI+ T       +S     F +L RV I+ C  +KDLTWL+F   L 
Sbjct: 712 RKLGIKRCGMREIKIERTTSSSSRNKSPTTPCFSNLSRVFIAKCHGLKDLTWLLFAPNLT 771

Query: 117 QLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKL 176
            L + F  E+E+IIS +K  + S  I      F +LE+L +   R LK +Y   L  P L
Sbjct: 772 FLEVGFSKEVEDIISEEKAEEHSATIVP----FRKLETLHLFELRGLKRIYAKALHFPCL 827

Query: 177 KKIQVRGCPQLKKLPVNSSS--VKERRVVIEGEKEWWEELQWEDQATQNAF 225
           K I V  C +L+KLP++S S    E  V+  GE+EW E ++WEDQATQ  F
Sbjct: 828 KVIHVEKCEKLRKLPLDSKSGIAGEELVIYYGEREWIERVEWEDQATQLRF 878

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  118 bits (295), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 125/220 (56%), Gaps = 14/220 (6%)

Query: 12  VLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLE 71
            L+ + G +  +++FL   +L S T+ + + +       +  +A M++LQEL   D ++ 
Sbjct: 657 TLTITLGLASILEQFLSNQRLASCTRALRIENLNPQSSVISFVATMDSLQELHFADSDIW 716

Query: 72  EMKIDSTEEVKKLF----QSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEME 127
           E+K+   E V  L      + F +L +V +  C +++DLTWL+F   L  LR++  ++++
Sbjct: 717 EIKVKRNETVLPLHIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVLRVISASDLK 776

Query: 128 EIISVDKLRDISEIIGSEHNF--FAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCP 185
           E+I+ +K          + N   F +L+ L ++  + LK ++  PLP P L+KI V GC 
Sbjct: 777 EVINKEK--------AEQQNLIPFQELKELRLENVQMLKHIHRGPLPFPCLQKILVNGCS 828

Query: 186 QLKKLPVNSSSVKERRVVIEGEKEWWEELQWEDQATQNAF 225
           +L+KLP+N +SV    +VIE  K+W E L+WED+AT+  F
Sbjct: 829 ELRKLPLNFTSVPRGDLVIEAHKKWIEILEWEDEATKARF 868

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score =  110 bits (276), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 126/235 (53%), Gaps = 12/235 (5%)

Query: 1   MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLV-----YHCKSAPFNLLHLA 55
           ++++  +KHL +L+ +  +S  ++ FL   +  S T+ + +     Y     P   +  +
Sbjct: 639 VRQIQAMKHLYLLTITLRNSSGLEIFLGDTRFSSYTEGLTLDEQSYYQSLKVPLATISSS 698

Query: 56  YMENLQELDLEDINLEEMKIDSTEEVKKLFQS--GFRSLDRVVISSCKKMKDLTWLVFVQ 113
               +Q+  +  I +E    + +E V    +    F +L +V + +C  +KDLTWLVF  
Sbjct: 699 RFLEIQDSHIPKIEIEGSSSNESEIVGPRVRRDISFINLRKVRLDNCTGLKDLTWLVFAP 758

Query: 114 ILKQLRIVFCTEMEEIISVD---KLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNP 170
            L  L +V   ++E IIS     +L+   E+ G     F +LE LT++    LKS+Y +P
Sbjct: 759 HLATLYVVCLPDIEHIISRSEESRLQKTCELAGVIP--FRELEFLTLRNLGQLKSIYRDP 816

Query: 171 LPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVIEGEKEWWEELQWEDQATQNAF 225
           L   KLK+I ++ CP+L KLP++S S  ++ VVI  E+EW + LQWED AT+  F
Sbjct: 817 LLFGKLKEINIKSCPKLTKLPLDSRSAWKQNVVINAEEEWLQGLQWEDVATKERF 871

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score =  109 bits (273), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 127/234 (54%), Gaps = 22/234 (9%)

Query: 1   MKELLGLKHLNVLSWSFGS-SLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHL---AY 56
           +KEL  L+HL VL+ +    +L   +FL   +L+S  +F+ + +  +   N   +     
Sbjct: 650 VKELEALEHLEVLTTTIDDCTLGTDQFLSSHRLMSCIRFLKISNNSNRNRNSSRISLPVT 709

Query: 57  MENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILK 116
           M+ LQE  +E  +  E+K+             F SL  V +S+C+++++LT+L+F   LK
Sbjct: 710 MDRLQEFTIEHCHTSEIKMGRI--------CSFSSLIEVNLSNCRRLRELTFLMFAPNLK 761

Query: 117 QLRIVFCTEMEEIISVDKLRDISEIIGSEHNF--FAQLESLTIKWGRNLKSVYPNPLPLP 174
           +L +V   ++E+II+ +K  D     G +     F +L  L +   R LK++Y +PLP P
Sbjct: 762 RLHVVSSNQLEDIINKEKAHD-----GEKSGIVPFPKLNELHLYNLRELKNIYWSPLPFP 816

Query: 175 KLKKIQVRGCPQLKKLPVNSSSVKERR---VVIEGEKEWWEELQWEDQATQNAF 225
            L+KI V GCP LKKLP++S S K      ++   E EW   ++WED+AT+  F
Sbjct: 817 CLEKINVMGCPNLKKLPLDSKSGKHGGNGLIITHREMEWITRVEWEDEATKTRF 870

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score =  107 bits (268), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 121/220 (55%), Gaps = 19/220 (8%)

Query: 16  SFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKI 75
           S  SSL V+K L  P+LV   Q +++   +     +L L  M+NL ++ +    + E+KI
Sbjct: 667 SIKSSLVVEKLLNAPRLVKCLQILVLRGVQEESSGVLTLPDMDNLNKVIIRKCGMCEIKI 726

Query: 76  DSTEEVKKLFQSGFRS--------LDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEME 127
               E K L  S  RS        L  V ISSC  +KDLTWL+F   L  L ++    +E
Sbjct: 727 ----ERKTLSLSSNRSPKTQFLHNLSTVHISSCDGLKDLTWLLFAPNLTSLEVLDSELVE 782

Query: 128 EIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQL 187
            II+ +K   +S II      F +LESL +     L+S+Y  PL  P LK I +  CP+L
Sbjct: 783 GIINQEKAMTMSGIIP-----FQKLESLRLHNLAMLRSIYWQPLSFPCLKTIHITKCPEL 837

Query: 188 KKLPVNSS-SVKERRVVIE-GEKEWWEELQWEDQATQNAF 225
           +KLP++S  ++++  +VI+  E+EW E ++W+++AT+  F
Sbjct: 838 RKLPLDSEIAIRDEELVIKYQEEEWLERVEWDNEATRLRF 877

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 9/213 (4%)

Query: 19  SSLAVQKFLKYPKLVSITQFVLVYHCKSAP---FNLLHLAYMENLQELDLEDINLEEMKI 75
           SS  V +   YP++    Q + +      P     +L L  + NL  + + +  + E+ I
Sbjct: 669 SSGLVGELFCYPRVGRCIQHIYIRDHWERPEESVGVLVLPAIHNLCYISIWNCWMWEIMI 728

Query: 76  DSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKL 135
           + T   K L    F +L  V I  C  +KDLTWL+F   L  LR+  C  +E+IIS +K 
Sbjct: 729 EKTPWKKNLTNPNFSNLSNVRIEGCDGLKDLTWLLFAPNLINLRVWGCKHLEDIISKEKA 788

Query: 136 RDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQV-RGCPQLKKLPVNS 194
             + E    E   F +LE L +     LKS+Y N LP  +L+ + +   CP+L+KLP++S
Sbjct: 789 ASVLE---KEILPFQKLECLNLYQLSELKSIYWNALPFQRLRCLDILNNCPKLRKLPLDS 845

Query: 195 SSV--KERRVVIEGEKEWWEELQWEDQATQNAF 225
            SV   E  V+   EK+W E ++WED+ATQ  F
Sbjct: 846 KSVVKVEEFVIKYKEKKWIERVEWEDEATQYRF 878

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT3|DRL38_ARATH Probable disease resistance protein At5g47260 OS=Arabidopsis thaliana GN=At5g47260 PE=3 SV=2

 Score =  101 bits (252), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 114/209 (54%), Gaps = 3/209 (1%)

Query: 18  GSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDS 77
           GSS+ +Q+ L   +L S  + + +         +L L  + +L ELD+   N+ E+ ID 
Sbjct: 650 GSSV-LQRLLSIQRLASSIRRLHLTETTIVDGGILSLNAIFSLCELDILGCNILEITIDW 708

Query: 78  TEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRD 137
              +++     F+++  + I  C+ ++DLTWL+    L +L +  C +MEE+IS DK   
Sbjct: 709 RCTIQREIIPQFQNIRTMTIHRCEYLRDLTWLLLAPCLGELSVSECPQMEEVISKDKA-- 766

Query: 138 ISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSV 197
           ++++  +    F  L  L +     L+S+Y  PLP P L+ + +R CP+L++LP NS S 
Sbjct: 767 MAKLGNTSEQPFQNLTKLVLDGLPKLESIYWTPLPFPVLEYLVIRRCPELRRLPFNSEST 826

Query: 198 KERRVVIEGEKEWWEELQWEDQATQNAFS 226
              +V    E++  + ++WED+AT+  FS
Sbjct: 827 IGNQVETIIEEQVIKIVEWEDEATKQRFS 855

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64789|DRL18_ARATH Probable disease resistance protein At1g61310 OS=Arabidopsis thaliana GN=At1g61310 PE=2 SV=1

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 123/235 (52%), Gaps = 26/235 (11%)

Query: 1   MKELLGLKHLNVLSWSFGSSLAV--QKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYME 58
           +KEL  L++L  L+ +  + L    Q+  K   ++ I  F+        PF+L  LA ME
Sbjct: 659 LKELQQLENLQDLAITLSAELISLDQRLAKVISILGIEGFL------QKPFDLSFLASME 712

Query: 59  NLQELDLEDINLEEMKIDSTEEVKKLFQ-----SGFRSLDRVVISSCKKMKDLTWLVFVQ 113
           NL  L +++    E+K   +E              F +L R+ I  C  MKDLTW++F  
Sbjct: 713 NLSSLWVKNSYFSEIKCRESETDSSYLHINPKIPCFTNLSRLDIVKCHSMKDLTWILFAP 772

Query: 114 ILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPL 173
            L  L I    E+ EII+ +K  +++ I       F +LE L + +   L+S+Y +PLP 
Sbjct: 773 NLVVLFIEDSREVGEIINKEKATNLTSITP-----FLKLERLILCYLPKLESIYWSPLPF 827

Query: 174 PKLKKIQVRGCPQLKKLPVNSSS---VKERRVVIEGEKEWWEELQWEDQATQNAF 225
           P L  I V  CP+L+KLP+N++S   V+E R+++     +  EL+WED+ T+N F
Sbjct: 828 PLLLNIDVEECPKLRKLPLNATSAPKVEEFRILM-----YPPELEWEDEDTKNRF 877

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O23317|DRL24_ARATH Probable disease resistance protein At4g14610 OS=Arabidopsis thaliana GN=At4g14610 PE=3 SV=1

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 101/180 (56%), Gaps = 9/180 (5%)

Query: 49  FNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW 108
           F +L    M N++ + +    ++E+K++          S F SL +VVI  C  +K+LTW
Sbjct: 537 FKILTFPSMCNIRRIGIWKCGMKEIKVEMRT------SSCFSSLSKVVIGQCDGLKELTW 590

Query: 109 LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP 168
           L+F   L  L   F  ++E+IIS +K   +++   S    F +LE L++     LKS+Y 
Sbjct: 591 LLFAPNLTYLDARFAEQLEDIISEEKAASVTDENASIIIPFQKLECLSLSDLPKLKSIYW 650

Query: 169 NPLPLPKLKKIQVR-GCPQLKKLPVNSSS--VKERRVVIEGEKEWWEELQWEDQATQNAF 225
           +PL  P+L ++ V+  CP+LKKLP+NS S       VV  GE +W E ++WED+AT+  F
Sbjct: 651 SPLSFPRLSELAVQEHCPKLKKLPLNSKSGTAGVELVVKYGENKWLEGVEWEDKATELRF 710

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O22727|DRL16_ARATH Probable disease resistance protein At1g61190 OS=Arabidopsis thaliana GN=At1g61190 PE=3 SV=1

 Score = 96.7 bits (239), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/236 (33%), Positives = 121/236 (51%), Gaps = 21/236 (8%)

Query: 1   MKELLGLKHLNVLSWSFGSSLAV--QKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYME 58
           +KEL  L++L  L  +  + L    Q+  K   ++ I  F+        PF+L  LA ME
Sbjct: 650 LKELQQLENLQDLRITESAELISLDQRLAKLISVLRIEGFL------QKPFDLSFLASME 703

Query: 59  NLQELDLEDINLEEMKIDSTE-EVKKLFQ------SGFRSLDRVVISSCKKMKDLTWLVF 111
           NL  L +E+    E+ I   E E +  +         F +L  ++I  C  MKDLTW++F
Sbjct: 704 NLYGLLVENSYFSEINIKCRESETESSYLHINPKIPCFTNLTGLIIMKCHSMKDLTWILF 763

Query: 112 VQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPL 171
              L  L I    E+ EII+ +K  +++ II      F +LE L +     L+S+Y +PL
Sbjct: 764 APNLVNLDIRDSREVGEIINKEKAINLTSIITP----FQKLERLFLYGLPKLESIYWSPL 819

Query: 172 PLPKLKKIQVRGCPQLKKLPVNSSSVK--ERRVVIEGEKEWWEELQWEDQATQNAF 225
           P P L  I V+ CP+L+KLP+N++SV   E   +     E   EL+WED+ T+N F
Sbjct: 820 PFPLLSNIVVKYCPKLRKLPLNATSVPLVEEFEIRMDPPEQENELEWEDEDTKNRF 875

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
24461865	892	NBS-LRR type disease resistance protein	0.936	0.247	0.449	1e-42
24461866	890	NBS-LRR type disease resistance protein	0.932	0.247	0.416	1e-38
24461861	890	NBS-LRR type disease resistance protein	0.889	0.235	0.441	4e-36
24461864	899	NBS-LRR type disease resistance protein	0.919	0.241	0.418	4e-35
24461863	889	NBS-LRR type disease resistance protein	0.944	0.250	0.432	1e-34
224122896	820	cc-nbs-lrr resistance protein [Populus t	0.894	0.257	0.373	3e-32
225443158	903	PREDICTED: probable disease resistance p	0.936	0.244	0.376	3e-30
255553059	812	Disease resistance protein RFL1, putativ	0.944	0.274	0.408	4e-30
296088271	565	unnamed protein product [Vitis vinifera]	0.927	0.387	0.374	2e-29
147852651	882	hypothetical protein VITISV_017542 [Viti	0.911	0.243	0.367	4e-29

>gi|24461865|gb|AAN62352.1|AF506028_19 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/227 (44%), Positives = 148/227 (65%), Gaps = 6/227 (2%)

Query: 1   MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCK-SAPFNLLHLAYMEN 59
           ++ELLGLKHL V++ +  SS  +Q FL   KL S TQ +L+ H K S    +  LA ++ 
Sbjct: 663 VEELLGLKHLEVITLTLRSSYGLQSFLNSHKLRSCTQALLLQHFKDSTSLEVSALADLKQ 722

Query: 60  LQELDLED-INLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQL 118
           L  L + + + LEE+K+D  EEV+   Q  FRSL+ V I +C ++KDLT+LVF   LK +
Sbjct: 723 LNRLQIANSVILEELKMDYAEEVQ---QFAFRSLNMVEICNCIQLKDLTFLVFAPNLKSI 779

Query: 119 RIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKK 178
           ++  C  MEEI S  K  ++ E++ +  N F +L++L +   RNLKS+Y   LP P LK 
Sbjct: 780 KVGICHAMEEIASEGKFAEVPEVMAN-LNPFEKLQNLEVAGARNLKSIYWKSLPFPHLKA 838

Query: 179 IQVRGCPQLKKLPVNSSSVKERRVVIEGEKEWWEELQWEDQATQNAF 225
           +    C +LKKLP++S+S KER++VI GE+ W E+LQWED+AT+NAF
Sbjct: 839 MSFLHCKKLKKLPLDSNSAKERKIVISGERNWREQLQWEDEATRNAF 885

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461866|gb|AAN62353.1|AF506028_20 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/228 (41%), Positives = 146/228 (64%), Gaps = 8/228 (3%)

Query: 1   MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHC--KSAPFNLLHLAYME 58
           ++ELLGLK+L V+S++  SS  +Q FL   KL S T+  L+  C   S    +  LA ++
Sbjct: 662 VEELLGLKYLEVISFTLRSSHGLQSFLSSHKLRSCTR-ALLLQCFNDSTSLEVSALADLK 720

Query: 59  NLQELDLEDIN-LEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQ 117
            L  L + +   LEE+K+D T EV++     F SL +V I +C K+KDLT+LVF   L+ 
Sbjct: 721 QLNRLWITECKKLEELKMDYTREVQQFV---FHSLKKVEILACSKLKDLTFLVFAPNLES 777

Query: 118 LRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLK 177
           + ++ C  MEE++S+ K  ++ E++ +  N FA+L++L +    NLKS+Y  PLP P LK
Sbjct: 778 IELMGCPAMEEMVSMGKFAEVPEVVAN-LNPFAKLQNLKLFGATNLKSIYWKPLPFPHLK 836

Query: 178 KIQVRGCPQLKKLPVNSSSVKERRVVIEGEKEWWEELQWEDQATQNAF 225
            +    C +LKKLP++S+S +ER +VI G + WWE+L+W D+AT+NAF
Sbjct: 837 SMSFSHCYKLKKLPLDSNSARERNIVISGTRRWWEQLEWVDEATRNAF 884

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461861|gb|AAN62348.1|AF506028_15 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 98/222 (44%), Positives = 133/222 (59%), Gaps = 12/222 (5%)

Query: 8   KHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCK-SAPFNLLHLAYMENLQELDLE 66
           KHL VLS + GSS A+Q FL    L S T+ +L+   + S   ++  LA ++ L+ L + 
Sbjct: 673 KHLEVLSLTLGSSRALQSFLTSHMLRSCTRAMLLQDFQGSTSVDVSGLADLKRLKRLRIS 732

Query: 67  DI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTE 125
           D   L E+KID   EV++    GF SL    ++ C K+KDLT LV +  LK + +  C  
Sbjct: 733 DCYELVELKIDYAGEVQRY---GFHSLQSFEVNYCSKLKDLTLLVLIPNLKSIEVTDCEA 789

Query: 126 MEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCP 185
           MEEIISV       E  G+  N FA+L+ L I    NLKS+Y  PLP P L+++ V  C 
Sbjct: 790 MEEIISV------GEFAGNP-NAFAKLQYLGIGNLPNLKSIYWKPLPFPCLEELTVSDCY 842

Query: 186 QLKKLPVNSSSVKERRVVIEGEKEWWEELQWEDQATQNAFSS 227
           +LKKLP++S+S KE ++VI G   WW  LQWED+ATQNAF S
Sbjct: 843 ELKKLPLDSNSAKEHKIVIRGAANWWRNLQWEDEATQNAFLS 884

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461864|gb|AAN62351.1|AF506028_18 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/227 (41%), Positives = 137/227 (60%), Gaps = 10/227 (4%)

Query: 1   MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCK-SAPFNLLHLAYMEN 59
           ++ L GLKHL VLS +  +S  +Q  L   KL S TQ + ++  K S P ++  LA +E+
Sbjct: 673 VEALRGLKHLEVLSLTLNNSQDLQCVLNSEKLRSCTQALYLHSFKRSEPLDVSALAGLEH 732

Query: 60  LQELDLEDIN-LEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQL 118
           L  L + +   LEE+K+     V       F+SL+++ I  C ++K+LT+L+F   LK +
Sbjct: 733 LNRLWIHECEELEELKMARQPFV-------FQSLEKIQIYGCHRLKNLTFLLFAPNLKSI 785

Query: 119 RIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKK 178
            +  C  MEEIIS  K  D  E++     F AQL SL +     LKS+Y  PLP P L+ 
Sbjct: 786 EVSSCFAMEEIISEVKFADFPEVMPIIKPF-AQLYSLRLGGLTVLKSIYKRPLPFPCLRD 844

Query: 179 IQVRGCPQLKKLPVNSSSVKERRVVIEGEKEWWEELQWEDQATQNAF 225
           + V  C +L+KLP++S+S KER++VI G  +WWE+LQWEDQ TQNAF
Sbjct: 845 LTVNSCDELRKLPLDSNSAKERKIVIRGYTKWWEQLQWEDQDTQNAF 891

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461863|gb|AAN62350.1|AF506028_17 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/231 (43%), Positives = 139/231 (60%), Gaps = 8/231 (3%)

Query: 1   MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAP--FNLLHLAYME 58
           ++ELLGLK+L VL  +  SS A+Q F    KL S  + +L+   +      +    A + 
Sbjct: 657 IQELLGLKYLEVLELTLRSSHALQLFFSSNKLKSCIRSLLLDEVRGTKSIIDATAFADLN 716

Query: 59  NLQELDLEDI-NLEEMKIDSTEEVKKLFQSG-FRSLDRVVISSCKKMKDLTWLVFVQILK 116
           +L EL ++ +  +EE+KID TE V+K  +   F SL RV +  C K+KDLT+LVF   LK
Sbjct: 717 HLNELRIDSVAEVEELKIDYTEIVRKRREPFVFGSLHRVTLGQCLKLKDLTFLVFAPNLK 776

Query: 117 QLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKL 176
            L+++ C  MEEIISV K  ++ E++G   + F  L+ L +     LKS+Y  PLP   L
Sbjct: 777 SLQLLNCRAMEEIISVGKFAEVPEVMG-HISPFENLQRLHLFDLPRLKSIYWKPLPFTHL 835

Query: 177 KKIQVRGCPQLKKLPVNSSSVKERRVVIEGEKEWWEELQWEDQATQNAFSS 227
           K+++V GC QLKKLP++S+S K    VI GE E W  LQWED ATQ AF S
Sbjct: 836 KEMRVHGCNQLKKLPLDSNSAK---FVIRGEAEGWNRLQWEDDATQIAFRS 883

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122896|ref|XP_002318943.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222857319|gb|EEE94866.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/230 (37%), Positives = 137/230 (59%), Gaps = 19/230 (8%)

Query: 2   KELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLV---YHCKSAPFNLLHLAYME 58
           ++L  L+HLN+L+ +  S  ++Q F  + K ++ TQ + +   +H +S   +LL    M 
Sbjct: 595 RDLQCLEHLNLLTITIRSQYSLQTFASFNKFLTATQALSLQKFHHARSLDISLLE--GMN 652

Query: 59  NLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQ 117
           +L +L+L D  NL+++ I+++   +   ++ F SL RV I +C K++DL WL     +K 
Sbjct: 653 SLDDLELIDCSNLKDLSINNSSITR---ETSFNSLRRVSIVNCTKLEDLAWLTLAPNIKF 709

Query: 118 LRIVFCTEMEEIISVDKLRDISEIIGSEHNF--FAQLESLTIKWGRNLKSVYPNPLPLPK 175
           L I  C++MEEII  +K          + N   F +LE L +     LK +YP+ LP P 
Sbjct: 710 LTISRCSKMEEIIRQEK--------SGQRNLKVFEELEFLRLVSLPKLKVIYPDALPFPS 761

Query: 176 LKKIQVRGCPQLKKLPVNSSSVKERRVVIEGEKEWWEELQWEDQATQNAF 225
           LK+I V  CP L+KLP+NS+S KE R+VI+G ++WW  L+WED+A Q+ F
Sbjct: 762 LKEIFVDDCPNLRKLPLNSNSAKEHRIVIQGWEDWWRRLEWEDEAAQHTF 811

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443158|ref|XP_002263674.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/242 (37%), Positives = 135/242 (55%), Gaps = 21/242 (8%)

Query: 1   MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENL 60
           + EL  L +L  L+ +  S+ A+Q+ L   K+   TQ + +        N L ++++EN+
Sbjct: 659 VNELECLNNLCDLNITIRSASALQRCLCSEKIEGCTQDLFLQFFNG--LNSLDISFLENM 716

Query: 61  QELDLEDIN----LEEMKIDSTEEVKKLFQS-------------GFRSLDRVVISSCKKM 103
           + LD   I+    L ++ I+ T+E +++  S              F SL  V I  C  +
Sbjct: 717 KRLDTLHISDCATLADLNINGTDEGQEILTSDNYLDNSKITSLKNFHSLRSVRIERCLML 776

Query: 104 KDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNL 163
           KDLTWLVF   L  L IVFC  +E++I   K  + +E  G   + FA+LE L +     L
Sbjct: 777 KDLTWLVFAPNLVNLWIVFCRNIEQVIDSGKWVEAAE--GRNMSPFAKLEDLILIDLPKL 834

Query: 164 KSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVIEGEKEWWEELQWEDQATQN 223
           KS+Y N L  P LK+++V  CP+LKKLP+NS+S K R +VI GEK+W  EL+WED+A  N
Sbjct: 835 KSIYRNTLAFPCLKEVRVHCCPKLKKLPLNSNSAKGRGMVIYGEKDWRNELEWEDEAAHN 894

Query: 224 AF 225
           AF
Sbjct: 895 AF 896

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553059|ref|XP_002517572.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223543204|gb|EEF44736.1| Disease resistance protein RFL1, putative [Ricinus communis]

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/235 (40%), Positives = 141/235 (60%), Gaps = 12/235 (5%)

Query: 1   MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAP--FNLLHLAYME 58
           ++EL  L++LN LS +   S  +Q F    + ++ T+ +L+  C  AP   ++  LA M+
Sbjct: 567 IEELQSLENLNELSITINFSSILQSFFNMDRFLNCTRALLLM-CFDAPRSVDISFLANMK 625

Query: 59  NLQELD-LEDINLEEMKID----STEEVKKLFQSG--FRSLDRVVISSCKKMKDLTWLVF 111
           NL  L+ L + +LE + +      T +V  +  S   F SL RVV+ +C+K+++LTWL  
Sbjct: 626 NLGILEILANSSLEVLDVGILTQGTSQVPSVISSKKCFDSLQRVVVYNCRKLRELTWLSL 685

Query: 112 VQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEH-NFFAQLESLTIKWGRNLKSVYPNP 170
              L  LR+ +   MEEI SV  L + + I GS +    A+LE L +     L+SV+PN 
Sbjct: 686 APNLAILRVKYNENMEEIFSVRILIEFA-IRGSINLKPLAKLEFLELGKLPRLESVHPNA 744

Query: 171 LPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVIEGEKEWWEELQWEDQATQNAF 225
           L  P LKKI+V  CP+LKKLP+NSSSVK   VVIE E +WWE+++WED AT+ AF
Sbjct: 745 LSFPFLKKIKVFKCPKLKKLPLNSSSVKGSEVVIEAEAKWWEDVEWEDDATKAAF 799

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088271|emb|CBI36497.3| unnamed protein product [Vitis vinifera]

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/235 (37%), Positives = 132/235 (56%), Gaps = 16/235 (6%)

Query: 1   MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLA-YMEN 59
           ++EL  LK+L  LS +  S+    +FL   KL++ T  + +   K +    L    Y+++
Sbjct: 330 VEELESLKYLTDLSVTIASASVFMRFLSSRKLLTCTHAICLKMFKGSSSLNLSSLEYLKD 389

Query: 60  LQELDLEDIN-LEEMKIDSTEEVKKLFQSG--------FRSLDRVVISSCKKMKDLTWLV 110
           L  L +ED++ L E+K D T + K+             F  L RVVI+ C+ +K+LTWL+
Sbjct: 390 LGGLKMEDLDSLREIKFDWTGKGKETVGYSSLNPKVKCFHGLRRVVINRCQMLKNLTWLI 449

Query: 111 FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNP 170
           F   L  L I  C E+EE+I      D     G   + F +L+ L +     LK+VY NP
Sbjct: 450 FAPNLLYLTIGQCDEIEEVIG-KGAED-----GGNLSPFTKLKRLELNGLPQLKNVYRNP 503

Query: 171 LPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVIEGEKEWWEELQWEDQATQNAF 225
           LP   L +I+V GCP+LK+LP+NS+S  + RVV+ G++EWW EL+WED+AT   F
Sbjct: 504 LPFLYLDRIEVVGCPKLKRLPLNSNSANQGRVVMVGKQEWWNELEWEDEATLTTF 558

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852651|emb|CAN80649.1| hypothetical protein VITISV_017542 [Vitis vinifera]

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 129/226 (57%), Gaps = 11/226 (4%)

Query: 1   MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENL 60
           ++EL  LK+L+ LS +  S+ A ++ L   KL S         C S     L ++   +L
Sbjct: 649 VEELESLKYLHDLSVTITSTSAFKRLLSSDKLRS---------CISRRLRNLFISNCGSL 699

Query: 61  QELDLEDINLEEMKIDSTEEVKKLF-QSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLR 119
           ++L+++ +   +  ++S     K+   + F SL+ + + SC ++KDLTW+ F   LK L 
Sbjct: 700 EDLEIDWVGEGKKTVESNYLNSKVSSHNSFHSLEALTVVSCSRLKDLTWVAFAPNLKVLT 759

Query: 120 IVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKI 179
           I+ C +M+E+I   K  D S   G     FA+L+ L +     LKS++   LPL  L +I
Sbjct: 760 IIDCDQMQEVIGTRK-SDESAENGENLGPFAKLQVLHLVGLPQLKSIFWKALPLIYLNRI 818

Query: 180 QVRGCPQLKKLPVNSSSVKERRVVIEGEKEWWEELQWEDQATQNAF 225
            VR CP LKKLP+N++S K  R+VI G+ EWW E++WED+AT NAF
Sbjct: 819 HVRNCPLLKKLPLNANSAKGHRIVISGQTEWWNEVEWEDEATHNAF 864

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.936	0.248	0.354	5e-26
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.936	0.249	0.337	3e-23
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.927	0.246	0.301	3.9e-23
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.932	0.246	0.324	6.5e-23
TAIR|locus:2153474	874	AT5G05400 [Arabidopsis thalian	0.944	0.255	0.297	6.8e-21
TAIR|locus:2031366	898	AT1G63350 "AT1G63350" [Arabido	0.906	0.238	0.310	1.5e-20
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.911	0.243	0.326	1.2e-18
TAIR|locus:2171589	948	AT5G47260 [Arabidopsis thalian	0.949	0.236	0.278	1.4e-18
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.944	0.25	0.286	1.9e-17
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.915	0.240	0.309	3.1e-17

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 5.0e-26, P = 5.0e-26
 Identities = 82/231 (35%), Positives = 120/231 (51%)

Query:     1 MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENL 60
             +KEL  L+HL V++    SSL  +  L   +LV   + V   + K     +L L  M NL
Sbjct:   652 VKELQLLEHLEVITLDISSSLVAEPLLCSQRLVECIKEVDFKYLKEESVRVLTLPTMGNL 711

Query:    61 QELDLEDINLEEMKIDSTEEVKKLFQSG----FRSLDRVVISSCKKMKDLTWLVFVQILK 116
             ++L ++   + E+KI+ T       +S     F +L RV I+ C  +KDLTWL+F   L 
Sbjct:   712 RKLGIKRCGMREIKIERTTSSSSRNKSPTTPCFSNLSRVFIAKCHGLKDLTWLLFAPNLT 771

Query:   117 QLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNXXXXXXX 176
              L + F  E+E+IIS +K  + S  I      F +LE+L +   R LK +Y         
Sbjct:   772 FLEVGFSKEVEDIISEEKAEEHSATIVP----FRKLETLHLFELRGLKRIYAKALHFPCL 827

Query:   177 XXIQVRGCPQLKKLPVNSSS--VKERRVVIEGEKEWWEELQWEDQATQNAF 225
               I V  C +L+KLP++S S    E  V+  GE+EW E ++WEDQATQ  F
Sbjct:   828 KVIHVEKCEKLRKLPLDSKSGIAGEELVIYYGEREWIERVEWEDQATQLRF 878

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 3.0e-23, P = 3.0e-23
 Identities = 78/231 (33%), Positives = 117/231 (50%)

Query:     1 MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAP---FNLLHLAYM 57
             MKEL  L+HL +++    S L  + F  YP++    Q + +      P     +L L  +
Sbjct:   652 MKELQLLEHLELITTDISSGLVGELFC-YPRVGRCIQHIYIRDHWERPEESVGVLVLPAI 710

Query:    58 ENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQ 117
              NL  + + +  + E+ I+ T   K L    F +L  V I  C  +KDLTWL+F   L  
Sbjct:   711 HNLCYISIWNCWMWEIMIEKTPWKKNLTNPNFSNLSNVRIEGCDGLKDLTWLLFAPNLIN 770

Query:   118 LRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNXXXXXXXX 177
             LR+  C  +E+IIS +K   + E    E   F +LE L +     LKS+Y N        
Sbjct:   771 LRVWGCKHLEDIISKEKAASVLE---KEILPFQKLECLNLYQLSELKSIYWNALPFQRLR 827

Query:   178 XIQV-RGCPQLKKLPVNSSSV-KERRVVIE-GEKEWWEELQWEDQATQNAF 225
              + +   CP+L+KLP++S SV K    VI+  EK+W E ++WED+ATQ  F
Sbjct:   828 CLDILNNCPKLRKLPLDSKSVVKVEEFVIKYKEKKWIERVEWEDEATQYRF 878

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 3.9e-23, P = 3.9e-23
 Identities = 69/229 (30%), Positives = 125/229 (54%)

Query:     1 MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENL 60
             + EL  L++L  L+ + G +  +++FL   +L S T+ + + +       +  +A M++L
Sbjct:   646 LNELQLLENLQTLTITLGLASILEQFLSNQRLASCTRALRIENLNPQSSVISFVATMDSL 705

Query:    61 QELDLEDINLEEMKIDSTEEVKKLF----QSGFRSLDRVVISSCKKMKDLTWLVFVQILK 116
             QEL   D ++ E+K+   E V  L      + F +L +V +  C +++DLTWL+F   L 
Sbjct:   706 QELHFADSDIWEIKVKRNETVLPLHIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLT 765

Query:   117 QLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNXXXXXXX 176
              LR++  ++++E+I+ +K      +I      F +L+ L ++  + LK ++         
Sbjct:   766 VLRVISASDLKEVINKEKAEQ-QNLIP-----FQELKELRLENVQMLKHIHRGPLPFPCL 819

Query:   177 XXIQVRGCPQLKKLPVNSSSVKERRVVIEGEKEWWEELQWEDQATQNAF 225
               I V GC +L+KLP+N +SV    +VIE  K+W E L+WED+AT+  F
Sbjct:   820 QKILVNGCSELRKLPLNFTSVPRGDLVIEAHKKWIEILEWEDEATKARF 868

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 6.5e-23, P = 6.5e-23
 Identities = 75/231 (32%), Positives = 125/231 (54%)

Query:     1 MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENL 60
             ++EL  L+HL VL+ S  SSL V+K L  P+LV   Q +++   +     +L L  M+NL
Sbjct:   652 VEELQLLEHLEVLNISIKSSLVVEKLLNAPRLVKCLQILVLRGVQEESSGVLTLPDMDNL 711

Query:    61 QELDLEDINLEEMKID----STEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILK 116
              ++ +    + E+KI+    S    +        +L  V ISSC  +KDLTWL+F   L 
Sbjct:   712 NKVIIRKCGMCEIKIERKTLSLSSNRSPKTQFLHNLSTVHISSCDGLKDLTWLLFAPNLT 771

Query:   117 QLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNXXXXXXX 176
              L ++    +E II+ +K   +S II      F +LESL +     L+S+Y         
Sbjct:   772 SLEVLDSELVEGIINQEKAMTMSGIIP-----FQKLESLRLHNLAMLRSIYWQPLSFPCL 826

Query:   177 XXIQVRGCPQLKKLPVNSS-SVKERRVVIE-GEKEWWEELQWEDQATQNAF 225
               I +  CP+L+KLP++S  ++++  +VI+  E+EW E ++W+++AT+  F
Sbjct:   827 KTIHITKCPELRKLPLDSEIAIRDEELVIKYQEEEWLERVEWDNEATRLRF 877

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153474 AT5G05400 [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 6.8e-21, P = 6.8e-21
 Identities = 70/235 (29%), Positives = 120/235 (51%)

Query:     1 MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLV-----YHCKSAPFNLLHLA 55
             ++++  +KHL +L+ +  +S  ++ FL   +  S T+ + +     Y     P   +  +
Sbjct:   639 VRQIQAMKHLYLLTITLRNSSGLEIFLGDTRFSSYTEGLTLDEQSYYQSLKVPLATISSS 698

Query:    56 YMENLQELDLEDINLEEMKIDSTEEVKKLFQS--GFRSLDRVVISSCKKMKDLTWLVFVQ 113
                 +Q+  +  I +E    + +E V    +    F +L +V + +C  +KDLTWLVF  
Sbjct:   699 RFLEIQDSHIPKIEIEGSSSNESEIVGPRVRRDISFINLRKVRLDNCTGLKDLTWLVFAP 758

Query:   114 ILKQLRIVFCTEMEEIIS---VDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNX 170
              L  L +V   ++E IIS     +L+   E+ G     F +LE LT++    LKS+Y + 
Sbjct:   759 HLATLYVVCLPDIEHIISRSEESRLQKTCELAGVIP--FRELEFLTLRNLGQLKSIYRDP 816

Query:   171 XXXXXXXXIQVRGCPQLKKLPVNSSSVKERRVVIEGEKEWWEELQWEDQATQNAF 225
                     I ++ CP+L KLP++S S  ++ VVI  E+EW + LQWED AT+  F
Sbjct:   817 LLFGKLKEINIKSCPKLTKLPLDSRSAWKQNVVINAEEEWLQGLQWEDVATKERF 871

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 72/232 (31%), Positives = 121/232 (52%)

Query:     1 MKELLGLKHLNVLSWSFGS-SLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAY--- 56
             +KEL  L+HL VL+ +    +L   +FL   +L+S  +F+ + +  +   N   ++    
Sbjct:   650 VKELEALEHLEVLTTTIDDCTLGTDQFLSSHRLMSCIRFLKISNNSNRNRNSSRISLPVT 709

Query:    57 MENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILK 116
             M+ LQE  +E  +  E+K+             F SL  V +S+C+++++LT+L+F   LK
Sbjct:   710 MDRLQEFTIEHCHTSEIKMGRI--------CSFSSLIEVNLSNCRRLRELTFLMFAPNLK 761

Query:   117 QLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNXXXXXXX 176
             +L +V   ++E+II+ +K  D  E  G     F +L  L +   R LK++Y +       
Sbjct:   762 RLHVVSSNQLEDIINKEKAHD-GEKSGIVP--FPKLNELHLYNLRELKNIYWSPLPFPCL 818

Query:   177 XXIQVRGCPQLKKLPVNSSSVKERR---VVIEGEKEWWEELQWEDQATQNAF 225
               I V GCP LKKLP++S S K      ++   E EW   ++WED+AT+  F
Sbjct:   819 EKINVMGCPNLKKLPLDSKSGKHGGNGLIITHREMEWITRVEWEDEATKTRF 870

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 1.2e-18, P = 1.2e-18
 Identities = 75/230 (32%), Positives = 122/230 (53%)

Query:     1 MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENL 60
             ++EL  L++L VL+    SS A+++ L   +LV   Q V V +       +L L  + +L
Sbjct:   654 LEELERLENLEVLTIEIISSSALEQLLCSHRLVRCLQKVSVKYLDEESVRILTLPSIGDL 713

Query:    61 QELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRI 120
             +E+ +    + ++ I   E    L    F +L +V+I+ C  +KDLTWL+F   L  L +
Sbjct:   714 REVFIGGCGMRDIII---ERNTSLTSPCFPNLSKVLITGCNGLKDLTWLLFAPNLTHLNV 770

Query:   121 VFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR-NLKSVYPNXXXXXXXXXI 179
                 ++EEIIS +K    ++I+      F +LE L + W    LKS+Y N         I
Sbjct:   771 WNSRQIEEIISQEKA-STADIVP-----FRKLEYLHL-WDLPELKSIYWNPLPFPCLNQI 823

Query:   180 QVRG-CPQLKKLPVNSSS--VKERRVVIE-GEKEWWEELQWEDQATQNAF 225
              V+  C +L KLP++S S  V    +VI+ G++EW E ++WED+AT+  F
Sbjct:   824 NVQNKCRKLTKLPLDSQSCIVAGEELVIQYGDEEWKERVEWEDKATRLRF 873

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2171589 AT5G47260 [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 63/226 (27%), Positives = 115/226 (50%)

Query:     1 MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENL 60
             M+++  LK L  LS +   S  +Q+ L   +L S  + + +         +L L  + +L
Sbjct:   632 MEDIQLLKSLKELSLTVRGSSVLQRLLSIQRLASSIRRLHLTETTIVDGGILSLNAIFSL 691

Query:    61 QELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRI 120
              ELD+   N+ E+ ID    +++     F+++  + I  C+ ++DLTWL+    L +L +
Sbjct:   692 CELDILGCNILEITIDWRCTIQREIIPQFQNIRTMTIHRCEYLRDLTWLLLAPCLGELSV 751

Query:   121 VFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNXXXXXXXXXIQ 180
               C +MEE+IS DK   ++++  +    F  L  L +     L+S+Y           + 
Sbjct:   752 SECPQMEEVISKDKA--MAKLGNTSEQPFQNLTKLVLDGLPKLESIYWTPLPFPVLEYLV 809

Query:   181 VRGCPQLKKLPVNSSSVKERRVVIEGEKEWWEELQWEDQATQNAFS 226
             +R CP+L++LP NS S    +V    E++  + ++WED+AT+  FS
Sbjct:   810 IRRCPELRRLPFNSESTIGNQVETIIEEQVIKIVEWEDEATKQRFS 855

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.9e-17, P = 1.9e-17
 Identities = 67/234 (28%), Positives = 120/234 (51%)

Query:     1 MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFV----LVYHCKSAPFNLLHLAY 56
             +KEL  L+HL +L+    S++ +++ +    L++  Q V    L+Y  +      L L  
Sbjct:   650 VKELHLLEHLEILTIDIVSTMVLEQMIDAGTLMNCMQEVSIRCLIYDQEQD--TKLRLPT 707

Query:    57 MENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILK 116
             M++L+ L + +  + E++I+            F +L +V+I  C  +KDLTWL+F   + 
Sbjct:   708 MDSLRSLTMWNCEISEIEIERLTWNTNPTSPCFFNLSQVIIHVCSSLKDLTWLLFAPNIT 767

Query:   117 QLRIVFCTEMEEIISVDKLRDISEIIGSE-HNF--FAQLESLTIKWGRNLKSVYPNXXXX 173
              L I    +++E+IS  K   ++E    + H    F +L+ L +     LKS+Y      
Sbjct:   768 YLMIEQLEQLQELISHAKATGVTEEEQQQLHKIIPFQKLQILHLSSLPELKSIYWISLSF 827

Query:   174 XXXXXIQVRGCPQLKKLPVNSSS--VKERRVVIEGEKEWWEELQWEDQATQNAF 225
                  I V  CP+L+KLP++S +  V ++ V+   E EW E ++W+D+AT+  F
Sbjct:   828 PCLSGIYVERCPKLRKLPLDSKTGTVGKKFVLQYKETEWIESVEWKDEATKLHF 881

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 3.1e-17, P = 3.1e-17
 Identities = 72/233 (30%), Positives = 115/233 (49%)

Query:     1 MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENL 60
             +KEL  L++L  L+ +  + L +    +  KL+S    + +      PF+L  LA MENL
Sbjct:   646 LKELQQLQNLQELAITVSAEL-ISLDQRLAKLISN---LCIEGFLQKPFDLSFLASMENL 701

Query:    61 QELDLEDINLEEMKIDSTEEVKKLFQSG-----FRSLDRVVISSCKKMKDLTWLVFVQIL 115
               L +E+    E+K   +E      +       F +L R+ I  C  MKDLTW++F   L
Sbjct:   702 SSLRVENSYFSEIKCRESETESSYLRINPKIPCFTNLSRLEIMKCHSMKDLTWILFAPNL 761

Query:   116 KQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNXXXXXX 175
               L I    E+ EII+ +K  +++ I       F +LE L +     L+S+Y +      
Sbjct:   762 VVLLIEDSREVGEIINKEKATNLTSITP-----FLKLEWLILYNLPKLESIYWSPLPFPV 816

Query:   176 XXXIQVRGCPQLKKLPVNSSSV---KERRVVIEGEKEWWEELQWEDQATQNAF 225
                + V  CP+L+KLP+N++SV   +E  + +    E   EL+WED  T+N F
Sbjct:   817 LLTMDVSNCPKLRKLPLNATSVSKVEEFEIHMYPPPEQENELEWEDDDTKNRF 869

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XIII000034 cc-nbs-lrr resistance protein (820 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	236
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.003

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 20/158 (12%)

Query: 59  NLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQL 118
           N+  LDL++  +EE            F S  R  +   +  C+ MK       VQ L  L
Sbjct: 726 NISWLDLDETAIEE------------FPSNLRLENLDELILCE-MKSEKLWERVQPLTPL 772

Query: 119 RIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKK 178
             +    +  +   D +  + E+  S  N   +LE L I+   NL+++ P  + L  L+ 
Sbjct: 773 MTMLSPSLTRLFLSD-IPSLVELPSSIQNLH-KLEHLEIENCINLETL-PTGINLESLES 829

Query: 179 IQVRGCPQLKKLP---VNSSSVKERRVVIEGEKEWWEE 213
           + + GC +L+  P    N S +   R  IE E  WW E
Sbjct: 830 LDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIE 866

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.45
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.31
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.26
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.55
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.49
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.06
PRK15386	426	type III secretion protein GogB; Provisional	97.91
PRK15386	426	type III secretion protein GogB; Provisional	97.82
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.66
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.61
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.44
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.38
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.38
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.34
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.33
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.29
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.28
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.27
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.15
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.11
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.03
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.02
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.0
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.78
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.71
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.65
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.49
KOG4341	483	consensus F-box protein containing LRR [General fu	96.46
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.42
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.23
KOG4341	483	consensus F-box protein containing LRR [General fu	96.2
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.03
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.03
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.02
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	95.83
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.82
KOG0617	264	consensus Ras suppressor protein (contains leucine	95.44
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.88
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	94.24
PLN03150	623	hypothetical protein; Provisional	93.86
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.4
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.3
KOG0472	565	consensus Leucine-rich repeat protein [Function un	92.71
KOG2123	388	consensus Uncharacterized conserved protein [Funct	92.18
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	92.15
PLN03150	623	hypothetical protein; Provisional	92.02
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.9
KOG0472	565	consensus Leucine-rich repeat protein [Function un	91.38
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	91.09
KOG2982	418	consensus Uncharacterized conserved protein [Funct	90.98
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	90.21
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	87.96
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	87.22
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	87.14
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	86.41
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	86.07
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	85.02
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	81.11

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.45  E-value=1.8e-14  Score=137.39  Aligned_cols=217  Identities=32%  Similarity=0.461  Sum_probs=166.5

Q ss_pred             CcccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCC-ccceeeecccc
Q 046682            1 MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTE   79 (236)
Q Consensus         1 l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~   79 (236)
                      ++||+.|++|+.++++..+...++.+..+.++....+.+.+.+|.. ....+++..+.+|+.|.|.+| ..+ +.+++..
T Consensus       661 l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e-~~~~~~~  738 (889)
T KOG4658|consen  661 LKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISE-IVIEWEE  738 (889)
T ss_pred             HHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCch-hhccccc
Confidence            4688999999999998877766778888888877888888766533 222367889999999999999 443 3332221


Q ss_pred             cccccCcc-CCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEE-ec
Q 046682           80 EVKKLFQS-GFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESL-TI  157 (236)
Q Consensus        80 ~~~~~~~~-~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L-~l  157 (236)
                      .   .... .|+++..+.+.+|..++.++|....|+|++|.+.+|..++++++.........   .....|+++..+ .+
T Consensus       739 ~---~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~---~~i~~f~~~~~l~~~  812 (889)
T KOG4658|consen  739 S---LIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELK---ELILPFNKLEGLRML  812 (889)
T ss_pred             c---cchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcc---cEEecccccccceee
Confidence            1   1112 37889999999999999999999999999999999999999986544332110   124577888888 68


Q ss_pred             cccccccccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCC-C--cceEEechHHHHhhccCCchhhhhhh
Q 046682          158 KWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVK-E--RRVVIEGEKEWWEELQWEDQATQNAF  225 (236)
Q Consensus       158 ~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~-~--~l~~~~~~~~w~~~l~w~~~~~~~~~  225 (236)
                      .+.++++.++.....++.|+.+.|..||+++.+|....... .  ...+.-.+.+|-+.++|++++++..+
T Consensus       813 ~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  883 (889)
T KOG4658|consen  813 CSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF  883 (889)
T ss_pred             ecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence            89999999988888899999999999999999999866543 1  22333455678899999999998877

>PLN03210 Resistant to P

Probab=99.31  E-value=7.7e-12  Score=123.85  Aligned_cols=97  Identities=18%  Similarity=0.224  Sum_probs=60.2

Q ss_pred             HHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCC
Q 046682           23 VQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCK  101 (236)
Q Consensus        23 l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~  101 (236)
                      ++.+.....-.++|+.|++++|..... ++.+..+++|+.|.+.+| .+..++         .....+++|+.|++.+|.
T Consensus       623 l~~L~~~~~~l~~Lk~L~Ls~~~~l~~-ip~ls~l~~Le~L~L~~c~~L~~lp---------~si~~L~~L~~L~L~~c~  692 (1153)
T PLN03210        623 LEKLWDGVHSLTGLRNIDLRGSKNLKE-IPDLSMATNLETLKLSDCSSLVELP---------SSIQYLNKLEDLDMSRCE  692 (1153)
T ss_pred             ccccccccccCCCCCEEECCCCCCcCc-CCccccCCcccEEEecCCCCccccc---------hhhhccCCCCEEeCCCCC
Confidence            334433333346777777777654211 145666777777787777 666552         234556777777777777


Q ss_pred             CCCcchhhhcccCccEEeEeccccccee
Q 046682          102 KMKDLTWLVFVQILKQLRIVFCTEMEEI  129 (236)
Q Consensus       102 ~l~~l~~l~~lp~L~~L~i~~C~~L~~i  129 (236)
                      .++.++....+++|+.|.+++|..++.+
T Consensus       693 ~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~  720 (1153)
T PLN03210        693 NLEILPTGINLKSLYRLNLSGCSRLKSF  720 (1153)
T ss_pred             CcCccCCcCCCCCCCEEeCCCCCCcccc
Confidence            7777665446777777777777665544

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.26  E-value=1.3e-11  Score=122.24  Aligned_cols=171  Identities=20%  Similarity=0.308  Sum_probs=102.3

Q ss_pred             cccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCC-ccceeeeccccccc
Q 046682            4 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTEEVK   82 (236)
Q Consensus         4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~~   82 (236)
                      .+.+.+|+.|+++.+.  .++.+.... ..++|+.|.+.+|........++.++++|+.|.+++| +++.++.       
T Consensus       630 ~~~l~~Lk~L~Ls~~~--~l~~ip~ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-------  699 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSK--NLKEIPDLS-MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-------  699 (1153)
T ss_pred             cccCCCCCEEECCCCC--CcCcCCccc-cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-------
Confidence            4567778887776432  233332222 2478999999999763222245788899999999999 8877632       


Q ss_pred             ccCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccc-----------------------------
Q 046682           83 KLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVD-----------------------------  133 (236)
Q Consensus        83 ~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~-----------------------------  133 (236)
                         ...+++|+.|.+++|..++.++..  .++|+.|+++++. ++.++...                             
T Consensus       700 ---~i~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~  773 (1153)
T PLN03210        700 ---GINLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLM  773 (1153)
T ss_pred             ---cCCCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhh
Confidence               124677777777777665544321  2334444443322 11111000                             


Q ss_pred             -------------ccccccccccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCC
Q 046682          134 -------------KLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPV  192 (236)
Q Consensus       134 -------------~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~  192 (236)
                                   ......+.. ..+..+++|+.|+|.+|.+++.++... .+++|+.|.+++|.+++.+|.
T Consensus       774 ~~~~~sL~~L~Ls~n~~l~~lP-~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        774 TMLSPSLTRLFLSDIPSLVELP-SSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             hhccccchheeCCCCCCccccC-hhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc
Confidence                         000000000 234567888888888888888887644 578888888888888877764

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.55  E-value=1.2e-07  Score=92.81  Aligned_cols=47  Identities=19%  Similarity=0.162  Sum_probs=27.6

Q ss_pred             cccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCC
Q 046682          147 NFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVN  193 (236)
Q Consensus       147 ~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~  193 (236)
                      ..+++|+.|++.++.-...++.....+++|+.|.+.+|.--..+|..
T Consensus       305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  351 (968)
T PLN00113        305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN  351 (968)
T ss_pred             cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH
Confidence            44566666666655433333333445778888888887654456643

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.49  E-value=2.3e-07  Score=90.89  Aligned_cols=46  Identities=17%  Similarity=0.104  Sum_probs=25.0

Q ss_pred             cccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCC
Q 046682          147 NFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPV  192 (236)
Q Consensus       147 ~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~  192 (236)
                      ..+++|+.|+++++.-...++.....+++|+.|.+.++.-...+|.
T Consensus       281 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~  326 (968)
T PLN00113        281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV  326 (968)
T ss_pred             hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence            4456666666665542223333334566777777776654444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=4.5e-07  Score=75.77  Aligned_cols=134  Identities=18%  Similarity=0.124  Sum_probs=89.9

Q ss_pred             ccceEEEEeccCCCCcccc--chhhcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCCCCCc---ch
Q 046682           34 SITQFVLVYHCKSAPFNLL--HLAYMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKD---LT  107 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~--~l~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~---l~  107 (236)
                      .+|+.|+|+.|.|....-.  -+.+++.|.+|++++| -..+.+- .      .-...-++|+.|+|+||.+--.   +.
T Consensus       234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt-v------~V~hise~l~~LNlsG~rrnl~~sh~~  306 (419)
T KOG2120|consen  234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT-V------AVAHISETLTQLNLSGYRRNLQKSHLS  306 (419)
T ss_pred             ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh-H------HHhhhchhhhhhhhhhhHhhhhhhHHH
Confidence            5788999999987322111  1467889999999999 3332210 0      0001135789999999965332   22


Q ss_pred             h-hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccc-cCCCCCCCCCccEEeEeCCC
Q 046682          108 W-LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKS-VYPNPLPLPKLKKIQVRGCP  185 (236)
Q Consensus       108 ~-l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~-i~~~~~~~p~L~~L~i~~C~  185 (236)
                      . ....|+|.+|++++|..++.-..            ..+..|+.|++|.++.|..+-. .-......|+|.+|+|.+|-
T Consensus       307 tL~~rcp~l~~LDLSD~v~l~~~~~------------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  307 TLVRRCPNLVHLDLSDSVMLKNDCF------------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             HHHHhCCceeeeccccccccCchHH------------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            2 34789999999999988864211            3456899999999999976532 11134568999999999984


Q ss_pred             C
Q 046682          186 Q  186 (236)
Q Consensus       186 ~  186 (236)
                      .
T Consensus       375 s  375 (419)
T KOG2120|consen  375 S  375 (419)
T ss_pred             C
Confidence            3

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.91  E-value=5e-05  Score=67.02  Aligned_cols=128  Identities=16%  Similarity=0.212  Sum_probs=66.7

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhcc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFV  112 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~l  112 (236)
                      ..++.|.|++|.=..+  +.++  .+|++|.+++| +++.++-           ...++|+.|.|.+|.++..+     .
T Consensus        52 ~~l~~L~Is~c~L~sL--P~LP--~sLtsL~Lsnc~nLtsLP~-----------~LP~nLe~L~Ls~Cs~L~sL-----P  111 (426)
T PRK15386         52 RASGRLYIKDCDIESL--PVLP--NELTEITIENCNNLTTLPG-----------SIPEGLEKLTVCHCPEISGL-----P  111 (426)
T ss_pred             cCCCEEEeCCCCCccc--CCCC--CCCcEEEccCCCCcccCCc-----------hhhhhhhheEccCccccccc-----c
Confidence            5677888888832222  2222  46888888888 7765421           11357888888888766554     2


Q ss_pred             cCccEEeEec--ccccceeccccccccccc---cccccc-ccc-CcccEEeccccccccccCCCCCCCCCccEEeEeCC
Q 046682          113 QILKQLRIVF--CTEMEEIISVDKLRDISE---IIGSEH-NFF-AQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGC  184 (236)
Q Consensus       113 p~L~~L~i~~--C~~L~~i~~~~~~~~~~~---~~~~~~-~~~-p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C  184 (236)
                      ++|++|.|.+  |..+..++..........   ...... ..+ ++|++|.+.+|..+. ++..  -.++|+.|.+..+
T Consensus       112 ~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~--LP~SLk~L~ls~n  187 (426)
T PRK15386        112 ESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEK--LPESLQSITLHIE  187 (426)
T ss_pred             cccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Cccc--ccccCcEEEeccc
Confidence            4577777653  223333332111000000   000000 012 467777777776543 2211  1247777777664

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.82  E-value=7e-05  Score=66.07  Aligned_cols=158  Identities=13%  Similarity=0.146  Sum_probs=86.1

Q ss_pred             cccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCC-ccceeeecccc---
Q 046682            4 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTE---   79 (236)
Q Consensus         4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~---   79 (236)
                      +..+.+++.|+|+.+   .+..+   +.++.+|+.|.+.+|.........++  ++|++|.|++| .+..++..-..   
T Consensus        48 ~~~~~~l~~L~Is~c---~L~sL---P~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe~L~L  119 (426)
T PRK15386         48 IEEARASGRLYIKDC---DIESL---PVLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVRSLEI  119 (426)
T ss_pred             HHHhcCCCEEEeCCC---CCccc---CCCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccccceEEe
Confidence            445678888888855   34444   34667999999999977322112233  58999999999 77655211000   


Q ss_pred             -cccccCccCC-CCccEEEEecCCCCCcch-hhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEe
Q 046682           80 -EVKKLFQSGF-RSLDRVVISSCKKMKDLT-WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLT  156 (236)
Q Consensus        80 -~~~~~~~~~l-~~L~~L~i~~c~~l~~l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~  156 (236)
                       .........+ ++|+.|.+.+........ .....++|++|.|.+|..+. ++             ..  -.++|+.|+
T Consensus       120 ~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP-------------~~--LP~SLk~L~  183 (426)
T PRK15386        120 KGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LP-------------EK--LPESLQSIT  183 (426)
T ss_pred             CCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Cc-------------cc--ccccCcEEE
Confidence             0000111222 345555553321111000 00123579999999887552 11             01  225899999


Q ss_pred             ccccc--cccccCCCCCCCCCccEEeEeCCCCCC
Q 046682          157 IKWGR--NLKSVYPNPLPLPKLKKIQVRGCPQLK  188 (236)
Q Consensus       157 l~~~~--~L~~i~~~~~~~p~L~~L~i~~C~~L~  188 (236)
                      +....  .++ +.....+ +++ .|.+.+|-++.
T Consensus       184 ls~n~~~sLe-I~~~sLP-~nl-~L~f~n~lkL~  214 (426)
T PRK15386        184 LHIEQKTTWN-ISFEGFP-DGL-DIDLQNSVLLS  214 (426)
T ss_pred             eccccccccc-Ccccccc-ccc-EechhhhcccC
Confidence            97532  222 2222222 466 89999986654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.66  E-value=6.9e-05  Score=58.82  Aligned_cols=103  Identities=13%  Similarity=0.193  Sum_probs=33.0

Q ss_pred             ccceEEEEeccCCCCccccchh-hcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch-hh-h
Q 046682           34 SITQFVLVYHCKSAPFNLLHLA-YMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT-WL-V  110 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~-~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~-~l-~  110 (236)
                      ..++.|++.++.-..+  ..+. .+.+|+.|++++|.++.+.          ....+++|+.|++++- +++++. .+ .
T Consensus        19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~----------~l~~L~~L~~L~L~~N-~I~~i~~~l~~   85 (175)
T PF14580_consen   19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE----------GLPGLPRLKTLDLSNN-RISSISEGLDK   85 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S--T----------T----TT--EEE--SS----S-CHHHHH
T ss_pred             cccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc----------CccChhhhhhcccCCC-CCCccccchHH
Confidence            3677888888754333  4454 4678888888888555441          2345788888888654 677764 23 3


Q ss_pred             cccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682          111 FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR  161 (236)
Q Consensus       111 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  161 (236)
                      .+|+|++|++++- ++.++-.         .  ..+..+|+|+.|++.+-|
T Consensus        86 ~lp~L~~L~L~~N-~I~~l~~---------l--~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   86 NLPNLQELYLSNN-KISDLNE---------L--EPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             H-TT--EEE-TTS----SCCC---------C--GGGGG-TT--EEE-TT-G
T ss_pred             hCCcCCEEECcCC-cCCChHH---------h--HHHHcCCCcceeeccCCc
Confidence            5788888888652 3333211         0  255678888888888766

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.61  E-value=0.00015  Score=46.52  Aligned_cols=37  Identities=27%  Similarity=0.502  Sum_probs=17.8

Q ss_pred             cccCcccEEeccccccccccCCCC-CCCCCccEEeEeCC
Q 046682          147 NFFAQLESLTIKWGRNLKSVYPNP-LPLPKLKKIQVRGC  184 (236)
Q Consensus       147 ~~~p~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~~C  184 (236)
                      ..+++|++|+|+ ..+++.+..+. ..+++|++|+++++
T Consensus        22 ~~l~~L~~L~l~-~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   22 SNLPNLETLDLS-NNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTGTTESEEEET-SSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCCCCCCEeEcc-CCccCccCHHHHcCCCCCCEEeCcCC
Confidence            345555555555 23344444332 34555555555554

...

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.44  E-value=3.6e-05  Score=65.53  Aligned_cols=12  Identities=58%  Similarity=0.529  Sum_probs=6.0

Q ss_pred             cccCCceeecCC
Q 046682           57 MENLQELDLEDI   68 (236)
Q Consensus        57 l~~L~~L~i~~c   68 (236)
                      +++|+.|++++|
T Consensus        80 ~~~L~~L~l~~~   91 (319)
T cd00116          80 GCGLQELDLSDN   91 (319)
T ss_pred             cCceeEEEccCC
Confidence            445555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.38  E-value=1.6e-05  Score=61.77  Aligned_cols=146  Identities=19%  Similarity=0.213  Sum_probs=90.3

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch-hhhcc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT-WLVFV  112 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~-~l~~l  112 (236)
                      ..+..|.++.-.-+.+ .+.+..+.+|+.|.++++.++++         +++++.++.|+.|++. ..++..++ ..+++
T Consensus        33 s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie~l---------p~~issl~klr~lnvg-mnrl~~lprgfgs~  101 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIEEL---------PTSISSLPKLRILNVG-MNRLNILPRGFGSF  101 (264)
T ss_pred             hhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhhhc---------Chhhhhchhhhheecc-hhhhhcCccccCCC
Confidence            5666777765533223 36688899999999998877777         3456778999999873 44565554 46789


Q ss_pred             cCccEEeEeccccccee--cccccccc----------ccccccccccccCcccEEeccccccccccCCCCCCCCCccEEe
Q 046682          113 QILKQLRIVFCTEMEEI--ISVDKLRD----------ISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQ  180 (236)
Q Consensus       113 p~L~~L~i~~C~~L~~i--~~~~~~~~----------~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~  180 (236)
                      |-|+.|++..- ++.+-  ++.-..+.          ..++-...++.+.+|+.|.+++- +|-+++...+.+..|++|.
T Consensus       102 p~levldltyn-nl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelh  179 (264)
T KOG0617|consen  102 PALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELH  179 (264)
T ss_pred             chhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHh
Confidence            99999999753 33321  11100000          00111134566677777777652 3444555555677788888


Q ss_pred             EeCCCCCCCcCCC
Q 046682          181 VRGCPQLKKLPVN  193 (236)
Q Consensus       181 i~~C~~L~~lp~~  193 (236)
                      |.+- .|..+|..
T Consensus       180 iqgn-rl~vlppe  191 (264)
T KOG0617|consen  180 IQGN-RLTVLPPE  191 (264)
T ss_pred             cccc-eeeecChh
Confidence            7774 56666654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.38  E-value=5.5e-05  Score=64.41  Aligned_cols=37  Identities=16%  Similarity=0.109  Sum_probs=18.7

Q ss_pred             cccCcccEEeccccccccc-----cCCC-CCCCCCccEEeEeCC
Q 046682          147 NFFAQLESLTIKWGRNLKS-----VYPN-PLPLPKLKKIQVRGC  184 (236)
Q Consensus       147 ~~~p~L~~L~l~~~~~L~~-----i~~~-~~~~p~L~~L~i~~C  184 (236)
                      ..+++|++|.+++++ +..     +... ....+.|++|.+.+|
T Consensus       218 ~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n  260 (319)
T cd00116         218 ASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCN  260 (319)
T ss_pred             cccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCC
Confidence            345667777776653 221     1100 002356777777776

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.34  E-value=0.00018  Score=56.49  Aligned_cols=134  Identities=14%  Similarity=0.079  Sum_probs=46.6

Q ss_pred             cccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccc
Q 046682            4 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKK   83 (236)
Q Consensus         4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~   83 (236)
                      ..+..+++.|++.......++.+..   ....|+.|+++++.-..+  ..+..+++|+.|.++++.+.++.. .      
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~L~~---~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~-~------   82 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIENLGA---TLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE-G------   82 (175)
T ss_dssp             ---------------------S--T---T-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH-H------
T ss_pred             cccccccccccccccccccccchhh---hhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc-c------
Confidence            4455667888877655555555432   126899999999965555  667888999999999986665521 0      


Q ss_pred             cCccCCCCccEEEEecCCCCCc---chhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEecccc
Q 046682           84 LFQSGFRSLDRVVISSCKKMKD---LTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWG  160 (236)
Q Consensus        84 ~~~~~l~~L~~L~i~~c~~l~~---l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~  160 (236)
                       -...+|+|++|++.+- ++.+   +..+..+|+|+.|++.+.+--.     ...+..     ..+..+|+|+.|+-...
T Consensus        83 -l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-----~~~YR~-----~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   83 -LDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCE-----KKNYRL-----FVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             -HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGG-----STTHHH-----HHHHH-TT-SEETTEET
T ss_pred             -hHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccc-----hhhHHH-----HHHHHcChhheeCCEEc
Confidence             0124899999999764 4544   4566789999999998765221     111110     13346778888776544


Q ss_pred             c
Q 046682          161 R  161 (236)
Q Consensus       161 ~  161 (236)
                      .
T Consensus       151 ~  151 (175)
T PF14580_consen  151 T  151 (175)
T ss_dssp             T
T ss_pred             c
Confidence            3

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.33  E-value=0.00045  Score=44.20  Aligned_cols=39  Identities=21%  Similarity=0.197  Sum_probs=16.9

Q ss_pred             cceEEEEeccCCCCccccchhhcccCCceeecCCcccee
Q 046682           35 ITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEM   73 (236)
Q Consensus        35 ~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l   73 (236)
                      +|+.|.+.++.-..++...+..+++|+.|+++++.+..+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i   40 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI   40 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc
Confidence            344555555422222222344455555555554444433

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.29  E-value=0.00031  Score=67.01  Aligned_cols=40  Identities=20%  Similarity=0.339  Sum_probs=23.8

Q ss_pred             CcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCC
Q 046682          150 AQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVN  193 (236)
Q Consensus       150 p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~  193 (236)
                      ++|+.|+++++ +++.++...  .++|+.|++++| +|..+|..
T Consensus       346 ~sL~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~N-~Lt~LP~~  385 (754)
T PRK15370        346 PELQVLDVSKN-QITVLPETL--PPTITTLDVSRN-ALTNLPEN  385 (754)
T ss_pred             CcccEEECCCC-CCCcCChhh--cCCcCEEECCCC-cCCCCCHh
Confidence            46666666654 344444321  357778888777 56677643

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.28  E-value=6.8e-05  Score=70.82  Aligned_cols=80  Identities=13%  Similarity=0.136  Sum_probs=43.7

Q ss_pred             ccceEEEEeccCCCCcc-ccch-hhcccCCceeecCC--ccceeeecccccccccCccCCCCccEEEEecCCCCCcchhh
Q 046682           34 SITQFVLVYHCKSAPFN-LLHL-AYMENLQELDLEDI--NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWL  109 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~-~~~l-~~l~~L~~L~i~~c--~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l  109 (236)
                      .+|+.|+|.|-..-... +..+ .-+|+|++|.|.+-  .-.++.         .--.+||+|.+|+|+++ +++++..+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~---------~lc~sFpNL~sLDIS~T-nI~nl~GI  191 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFS---------QLCASFPNLRSLDISGT-NISNLSGI  191 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHH---------HHhhccCccceeecCCC-CccCcHHH
Confidence            46777777663221000 0112 24577777777664  111110         01135777777777776 57777666


Q ss_pred             hcccCccEEeEecc
Q 046682          110 VFVQILKQLRIVFC  123 (236)
Q Consensus       110 ~~lp~L~~L~i~~C  123 (236)
                      +.++||+.|.+.+.
T Consensus       192 S~LknLq~L~mrnL  205 (699)
T KOG3665|consen  192 SRLKNLQVLSMRNL  205 (699)
T ss_pred             hccccHHHHhccCC
Confidence            77777777766543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.27  E-value=0.00027  Score=67.38  Aligned_cols=41  Identities=20%  Similarity=0.251  Sum_probs=29.4

Q ss_pred             cCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCC
Q 046682          149 FAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVN  193 (236)
Q Consensus       149 ~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~  193 (236)
                      .++|+.|+|+++ +|..++...  .++|+.|+++++ +|..+|..
T Consensus       366 p~~L~~LdLs~N-~Lt~LP~~l--~~sL~~LdLs~N-~L~~LP~s  406 (754)
T PRK15370        366 PPTITTLDVSRN-ALTNLPENL--PAALQIMQASRN-NLVRLPES  406 (754)
T ss_pred             cCCcCEEECCCC-cCCCCCHhH--HHHHHHHhhccC-CcccCchh
Confidence            368999999886 466665432  247888988886 67788764

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.15  E-value=0.00013  Score=68.91  Aligned_cols=17  Identities=35%  Similarity=0.571  Sum_probs=8.9

Q ss_pred             hhcccCCceeecCCccc
Q 046682           55 AYMENLQELDLEDINLE   71 (236)
Q Consensus        55 ~~l~~L~~L~i~~c~le   71 (236)
                      .++++|..|+|+++++.
T Consensus       170 ~sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  170 ASFPNLRSLDISGTNIS  186 (699)
T ss_pred             hccCccceeecCCCCcc
Confidence            34555555555555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=4.7e-05  Score=63.95  Aligned_cols=132  Identities=19%  Similarity=0.150  Sum_probs=85.4

Q ss_pred             cCCcceeEEeeeh---HHHHHHhcCCcccccceEEEEeccCCC--CccccchhhcccCCceeecCC--ccceeeeccccc
Q 046682            8 KHLNVLSWSFGSS---LAVQKFLKYPKLVSITQFVLVYHCKSA--PFNLLHLAYMENLQELDLEDI--NLEEMKIDSTEE   80 (236)
Q Consensus         8 ~~L~~L~i~~~~~---~~l~~l~~~~~l~~~L~~L~l~~c~~~--~~~~~~l~~l~~L~~L~i~~c--~le~l~~~~~~~   80 (236)
                      ++|..|+++.++.   .+++.++...   ++|..|+|.-|...  .+.+....--++|..|+++||  ++..-.+.    
T Consensus       234 ~~L~~lnlsm~sG~t~n~~~ll~~sc---s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~----  306 (419)
T KOG2120|consen  234 SNLVRLNLSMCSGFTENALQLLLSSC---SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS----  306 (419)
T ss_pred             ccceeeccccccccchhHHHHHHHhh---hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH----
Confidence            4556666665442   2344555443   58999999999652  111111122278999999999  55421110    


Q ss_pred             ccccCccCCCCccEEEEecCCCCCc--chhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEecc
Q 046682           81 VKKLFQSGFRSLDRVVISSCKKMKD--LTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIK  158 (236)
Q Consensus        81 ~~~~~~~~l~~L~~L~i~~c~~l~~--l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~  158 (236)
                         .-....|+|.+|++++|-.++.  +..+..++.|++|.++.|..+-   +..    .     ..+...|+|.+|++.
T Consensus       307 ---tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~---p~~----~-----~~l~s~psl~yLdv~  371 (419)
T KOG2120|consen  307 ---TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII---PET----L-----LELNSKPSLVYLDVF  371 (419)
T ss_pred             ---HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC---hHH----e-----eeeccCcceEEEEec
Confidence               1123478999999999998886  2235589999999999998662   110    0     245678999999998


Q ss_pred             ccc
Q 046682          159 WGR  161 (236)
Q Consensus       159 ~~~  161 (236)
                      +|-
T Consensus       372 g~v  374 (419)
T KOG2120|consen  372 GCV  374 (419)
T ss_pred             ccc
Confidence            763

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.03  E-value=2.7e-05  Score=71.29  Aligned_cols=79  Identities=19%  Similarity=0.224  Sum_probs=37.5

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCC--ccceeeecccccccccCccCCCCccEEEEecCCCCCcch-hhh
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI--NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT-WLV  110 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c--~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~-~l~  110 (236)
                      ..|++|.+++.+-..+++..+++|++|+.|++++-  .+..+         +++...+.+|+.++++ |.++..+| .+.
T Consensus       173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~---------Ptsld~l~NL~dvDlS-~N~Lp~vPecly  242 (1255)
T KOG0444|consen  173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNI---------PTSLDDLHNLRDVDLS-ENNLPIVPECLY  242 (1255)
T ss_pred             hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcC---------CCchhhhhhhhhcccc-ccCCCcchHHHh
Confidence            34555555554322223334556666666666655  22222         2333445555555553 33444443 233


Q ss_pred             cccCccEEeEec
Q 046682          111 FVQILKQLRIVF  122 (236)
Q Consensus       111 ~lp~L~~L~i~~  122 (236)
                      .+++|..|.+++
T Consensus       243 ~l~~LrrLNLS~  254 (1255)
T KOG0444|consen  243 KLRNLRRLNLSG  254 (1255)
T ss_pred             hhhhhheeccCc
Confidence            455555555544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.02  E-value=0.0033  Score=60.19  Aligned_cols=31  Identities=16%  Similarity=0.113  Sum_probs=15.7

Q ss_pred             cCCcceeEEeeehHHHHHHhcCCcccccceEEEEecc
Q 046682            8 KHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHC   44 (236)
Q Consensus         8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c   44 (236)
                      .+|++|+++...   +..+   +.++++|+.|.+.++
T Consensus       242 ~~Lk~LdLs~N~---LtsL---P~lp~sL~~L~Ls~N  272 (788)
T PRK15387        242 PELRTLEVSGNQ---LTSL---PVLPPGLLELSIFSN  272 (788)
T ss_pred             CCCcEEEecCCc---cCcc---cCcccccceeeccCC
Confidence            566777765432   2222   123346666666555

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.00  E-value=0.00013  Score=66.28  Aligned_cols=121  Identities=20%  Similarity=0.230  Sum_probs=68.3

Q ss_pred             hhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceecc
Q 046682           54 LAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIIS  131 (236)
Q Consensus        54 l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~  131 (236)
                      +-.++.|+.|+++.+.++.|.++.+        ...++|+.|+++.- ++..++.  +..+..|++|.+++- .+..+-.
T Consensus       289 lfgLt~L~~L~lS~NaI~rih~d~W--------sftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e  358 (873)
T KOG4194|consen  289 LFGLTSLEQLDLSYNAIQRIHIDSW--------SFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHN-SIDHLAE  358 (873)
T ss_pred             ccccchhhhhccchhhhheeecchh--------hhcccceeEecccc-ccccCChhHHHHHHHhhhhccccc-chHHHHh
Confidence            3467888888888776666665544        34577888877653 4555432  223444455444331 1111100


Q ss_pred             cc------------ccccc---cccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCCC
Q 046682          132 VD------------KLRDI---SEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGCP  185 (236)
Q Consensus       132 ~~------------~~~~~---~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~  185 (236)
                      ..            ...+.   .|+......++|+|+.|.+.+ .+++.|+.. ..++++|++|++-+=+
T Consensus       359 ~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  359 GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc
Confidence            00            00000   011113456789999999976 578888765 3468899999887643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.84  E-value=0.00032  Score=68.05  Aligned_cols=21  Identities=29%  Similarity=0.325  Sum_probs=12.3

Q ss_pred             cccCcccEEeccccccccccC
Q 046682          147 NFFAQLESLTIKWGRNLKSVY  167 (236)
Q Consensus       147 ~~~p~L~~L~l~~~~~L~~i~  167 (236)
                      ...|+|+.|++.+|+.++.+.
T Consensus       767 ~f~~~L~~l~l~~~~~~e~~i  787 (889)
T KOG4658|consen  767 LFAPHLTSLSLVSCRLLEDII  787 (889)
T ss_pred             hccCcccEEEEecccccccCC
Confidence            345666666666666655543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.78  E-value=0.0053  Score=58.81  Aligned_cols=30  Identities=17%  Similarity=0.131  Sum_probs=14.7

Q ss_pred             CccEEEEecCCCCCcchhhhcccCccEEeEecc
Q 046682           91 SLDRVVISSCKKMKDLTWLVFVQILKQLRIVFC  123 (236)
Q Consensus        91 ~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C  123 (236)
                      +|+.|+++++ +++.++.  .+++|+.|+++++
T Consensus       283 ~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N  312 (788)
T PRK15387        283 GLCKLWIFGN-QLTSLPV--LPPGLQELSVSDN  312 (788)
T ss_pred             hcCEEECcCC-ccccccc--cccccceeECCCC
Confidence            4555555544 3444432  2355666666554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.71  E-value=0.00022  Score=60.12  Aligned_cols=127  Identities=19%  Similarity=0.172  Sum_probs=82.1

Q ss_pred             cCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCcc
Q 046682            8 KHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQS   87 (236)
Q Consensus         8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~   87 (236)
                      +.|+.++++..   .+..+-++.++.+.++.|.++...-..+  .+++.+++|..|+++++.+..+  +++       ..
T Consensus       284 q~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~--~Gw-------h~  349 (490)
T KOG1259|consen  284 QELTELDLSGN---LITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC--VGW-------HL  349 (490)
T ss_pred             hhhhhcccccc---chhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh--hhh-------Hh
Confidence            45666666543   3455555667778889888887643333  5678888899999888733322  121       12


Q ss_pred             CCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682           88 GFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR  161 (236)
Q Consensus        88 ~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  161 (236)
                      .+.|.+.|.+.+- .++++..+..+=+|+.|++++- +++.+-.      .     ..++.+|+|+.+.+.+-|
T Consensus       350 KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N-~Ie~lde------V-----~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  350 KLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSSN-QIEELDE------V-----NHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhcCEeeeehhhh-hHhhhhhhHhhhhheecccccc-chhhHHH------h-----cccccccHHHHHhhcCCC
Confidence            4667888887664 5677777777778888888652 3332211      0     467788888888887655

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=0.00036  Score=61.34  Aligned_cols=82  Identities=18%  Similarity=0.207  Sum_probs=41.0

Q ss_pred             ccceEEEEeccCCCCcc--ccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCC--cchh-
Q 046682           34 SITQFVLVYHCKSAPFN--LLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMK--DLTW-  108 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~--~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~--~l~~-  108 (236)
                      ++++.|++++---....  ..-+..+++|+.|+++.+.+..... .      .....+++|+.|.+..| ++.  ++.| 
T Consensus       146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s------~~~~~l~~lK~L~l~~C-Gls~k~V~~~  217 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-S------NTTLLLSHLKQLVLNSC-GLSWKDVQWI  217 (505)
T ss_pred             CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-c------cchhhhhhhheEEeccC-CCCHHHHHHH
Confidence            56666666644211110  0113566777777777663322211 0      11124667777777777 333  2222 


Q ss_pred             hhcccCccEEeEecc
Q 046682          109 LVFVQILKQLRIVFC  123 (236)
Q Consensus       109 l~~lp~L~~L~i~~C  123 (236)
                      +..+|+|+.|++..-
T Consensus       218 ~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  218 LLTFPSLEVLYLEAN  232 (505)
T ss_pred             HHhCCcHHHhhhhcc
Confidence            235677777766644

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.49  E-value=0.0024  Score=58.47  Aligned_cols=115  Identities=14%  Similarity=0.117  Sum_probs=59.1

Q ss_pred             ccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccc-
Q 046682            3 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEV-   81 (236)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~-   81 (236)
                      ++.+|.+|+.+.+....   +..+........++..|.+..---..+.-.+++.++.|+.|+++.+.+.+|.-.....+ 
T Consensus        97 ~f~nl~nLq~v~l~~N~---Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~  173 (873)
T KOG4194|consen   97 FFYNLPNLQEVNLNKNE---LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKV  173 (873)
T ss_pred             HHhcCCcceeeeeccch---hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCC
Confidence            45567778887776543   33333333344577778777653333322345666667777766553333321110000 


Q ss_pred             ---------------cccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEe
Q 046682           82 ---------------KKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIV  121 (236)
Q Consensus        82 ---------------~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~  121 (236)
                                     +......|.+|..|.+++- +++.++.  ...+|.|+.|++.
T Consensus       174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLn  229 (873)
T KOG4194|consen  174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLN  229 (873)
T ss_pred             CceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhcc
Confidence                           0011233445666666543 4555543  3357888888775

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.46  E-value=0.00038  Score=60.88  Aligned_cols=64  Identities=16%  Similarity=0.247  Sum_probs=37.9

Q ss_pred             cccCcccEEecccccccccc-----CCCCCCCCCccEEeEeCCCCCCCcCCCCCCCC---CcceEEechHHH
Q 046682          147 NFFAQLESLTIKWGRNLKSV-----YPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVK---ERRVVIEGEKEW  210 (236)
Q Consensus       147 ~~~p~L~~L~l~~~~~L~~i-----~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~---~~l~~~~~~~~w  210 (236)
                      ..-|.|+.|.++.|.....-     .....+...|+.+.+.+||.+..--....+..   ++...|.|....
T Consensus       369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt  440 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT  440 (483)
T ss_pred             cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence            35678888888877655433     22344567788888888888766443332222   444455554433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.42  E-value=0.00048  Score=54.73  Aligned_cols=67  Identities=16%  Similarity=0.195  Sum_probs=33.0

Q ss_pred             cCCCCccEEEEecCCCCCcch--hh-hcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccc
Q 046682           87 SGFRSLDRVVISSCKKMKDLT--WL-VFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNL  163 (236)
Q Consensus        87 ~~l~~L~~L~i~~c~~l~~l~--~l-~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L  163 (236)
                      ..+++++.|.+.+|..+.+.-  .+ +-.|+|+.|+|++|+.+++-.-            ..+..|++|+.|.|++++..
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL------------~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL------------ACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH------------HHHHHhhhhHHHHhcCchhh
Confidence            345555555555555544421  11 1345566666666655543210            23445566666666655544


Q ss_pred             cc
Q 046682          164 KS  165 (236)
Q Consensus       164 ~~  165 (236)
                      ..
T Consensus       190 ~~  191 (221)
T KOG3864|consen  190 AN  191 (221)
T ss_pred             hc
Confidence            43

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.23  E-value=0.0061  Score=36.38  Aligned_cols=32  Identities=22%  Similarity=0.252  Sum_probs=17.2

Q ss_pred             CccEEEEecCCCCCcchh-hhcccCccEEeEecc
Q 046682           91 SLDRVVISSCKKMKDLTW-LVFVQILKQLRIVFC  123 (236)
Q Consensus        91 ~L~~L~i~~c~~l~~l~~-l~~lp~L~~L~i~~C  123 (236)
                      +|+.|+++++ ++++++. +..+++|+.|+++++
T Consensus         2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence            4555666555 4555554 555666666666555

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.20  E-value=0.00015  Score=63.37  Aligned_cols=164  Identities=13%  Similarity=0.170  Sum_probs=97.0

Q ss_pred             ccceEEEEeccCCCCcc-c-cchhhcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--
Q 046682           34 SITQFVLVYHCKSAPFN-L-LHLAYMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--  108 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~-~-~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--  108 (236)
                      ..|+.|+++||.+.... + ....+.+++++|.+.+| .+.+.....       -....+.|++|++..|..+++...  
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s-------la~~C~~l~~l~L~~c~~iT~~~Lk~  210 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLS-------LARYCRKLRHLNLHSCSSITDVSLKY  210 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHH-------HHHhcchhhhhhhcccchhHHHHHHH
Confidence            57899999999874331 0 12367799999999999 776543211       123578899999999999888642  


Q ss_pred             -hhcccCccEEeEecccccce----ecccc-cc--------cccccccc--ccccccCcccEEeccccccccccCC--CC
Q 046682          109 -LVFVQILKQLRIVFCTEMEE----IISVD-KL--------RDISEIIG--SEHNFFAQLESLTIKWGRNLKSVYP--NP  170 (236)
Q Consensus       109 -l~~lp~L~~L~i~~C~~L~~----i~~~~-~~--------~~~~~~~~--~~~~~~p~L~~L~l~~~~~L~~i~~--~~  170 (236)
                       ...+|+|++|.++.|+.+..    .+..+ ..        ....+.+.  ......+-+..+.+..|..++....  ..
T Consensus       211 la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~  290 (483)
T KOG4341|consen  211 LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA  290 (483)
T ss_pred             HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence             23689999999999998876    11100 00        00000000  0001123344444445655543321  12


Q ss_pred             CCCCCccEEeEeCCCCCCCcCCCCCCC-CCcceEE
Q 046682          171 LPLPKLKKIQVRGCPQLKKLPVNSSSV-KERRVVI  204 (236)
Q Consensus       171 ~~~p~L~~L~i~~C~~L~~lp~~~~~~-~~~l~~~  204 (236)
                      ..+..|+.|..++|..+...+...... ..+|.++
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l  325 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVL  325 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEE
Confidence            346778999999998877766433222 1455544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.03  E-value=0.00037  Score=62.57  Aligned_cols=87  Identities=18%  Similarity=0.276  Sum_probs=50.5

Q ss_pred             ccceEEEEecc-CCCCc----cccchhhcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCCCCCcch
Q 046682           34 SITQFVLVYHC-KSAPF----NLLHLAYMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT  107 (236)
Q Consensus        34 ~~L~~L~l~~c-~~~~~----~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~  107 (236)
                      +.|+.|.+.+| .....    .......+.+|+.|.+..| .+.+..+...       ....++|+.|.+.+|..+++..
T Consensus       214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l-------~~~c~~L~~L~l~~c~~lt~~g  286 (482)
T KOG1947|consen  214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL-------ASRCPNLETLSLSNCSNLTDEG  286 (482)
T ss_pred             chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH-------HhhCCCcceEccCCCCccchhH
Confidence            46666777663 21100    0012334466677777766 4443322111       1126789999888888766532


Q ss_pred             ---hhhcccCccEEeEecccccc
Q 046682          108 ---WLVFVQILKQLRIVFCTEME  127 (236)
Q Consensus       108 ---~l~~lp~L~~L~i~~C~~L~  127 (236)
                         ....+|+|++|+|++|..+.
T Consensus       287 l~~i~~~~~~L~~L~l~~c~~~~  309 (482)
T KOG1947|consen  287 LVSIAERCPSLRELDLSGCHGLT  309 (482)
T ss_pred             HHHHHHhcCcccEEeeecCccch
Confidence               23468889999999988873

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.03  E-value=0.0019  Score=59.67  Aligned_cols=46  Identities=15%  Similarity=0.179  Sum_probs=20.6

Q ss_pred             ccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCCCC
Q 046682          148 FFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSS  195 (236)
Q Consensus       148 ~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~  195 (236)
                      .+++|+.|.+++ .+++.+......+..|+.|.++. .+|..+|....
T Consensus       243 ~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avc  288 (1255)
T KOG0444|consen  243 KLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSR-NQLTVLPDAVC  288 (1255)
T ss_pred             hhhhhheeccCc-CceeeeeccHHHHhhhhhhcccc-chhccchHHHh
Confidence            344555555543 22333332333344555555554 25555555433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.02  E-value=0.011  Score=35.32  Aligned_cols=38  Identities=26%  Similarity=0.441  Sum_probs=18.3

Q ss_pred             cCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcc
Q 046682           59 NLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDL  106 (236)
Q Consensus        59 ~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l  106 (236)
                      +|++|++++++++++.         +....+++|+.|+++++ .++++
T Consensus         2 ~L~~L~l~~N~i~~l~---------~~l~~l~~L~~L~l~~N-~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLP---------PELSNLPNLETLNLSNN-PISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHG---------GHGTTCTTSSEEEETSS-CCSBE
T ss_pred             cceEEEccCCCCcccC---------chHhCCCCCCEEEecCC-CCCCC
Confidence            4556666655444431         11345666666666655 34443

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.00  E-value=0.0017  Score=54.98  Aligned_cols=103  Identities=18%  Similarity=0.144  Sum_probs=58.9

Q ss_pred             ccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccc---cccc---cc--ccc-cccccccCcccEEe
Q 046682           86 QSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVD---KLRD---IS--EII-GSEHNFFAQLESLT  156 (236)
Q Consensus        86 ~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~---~~~~---~~--~~~-~~~~~~~p~L~~L~  156 (236)
                      ....|.++.|+++.- ++..+..+..+++|+.|++++- .+.++.+..   ++..   ..  .++ -+.+..+-+|..|+
T Consensus       303 vKL~Pkir~L~lS~N-~i~~v~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLD  380 (490)
T KOG1259|consen  303 VKLAPKLRRLILSQN-RIRTVQNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLD  380 (490)
T ss_pred             hhhccceeEEecccc-ceeeehhhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheecc
Confidence            345678888888664 5666666788999999999763 233322111   0000   00  000 03445566777777


Q ss_pred             ccc--cccccccCCCCCCCCCccEEeEeCCCCCCCcCC
Q 046682          157 IKW--GRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPV  192 (236)
Q Consensus       157 l~~--~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~  192 (236)
                      +++  ..++.... +.+.+|+|+.+.+.+-| +..+|.
T Consensus       381 l~~N~Ie~ldeV~-~IG~LPCLE~l~L~~NP-l~~~vd  416 (490)
T KOG1259|consen  381 LSSNQIEELDEVN-HIGNLPCLETLRLTGNP-LAGSVD  416 (490)
T ss_pred             ccccchhhHHHhc-ccccccHHHHHhhcCCC-ccccch
Confidence            764  22333332 35679999999888754 444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=95.83  E-value=0.0019  Score=61.64  Aligned_cols=106  Identities=18%  Similarity=0.194  Sum_probs=51.2

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhccc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQ  113 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp  113 (236)
                      ++|+.|++.+-.=..++-..+.++..|++|+++|+.++.++         .....++.|+.|.-.+ ..+..+|.+.++|
T Consensus       383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp---------~tva~~~~L~tL~ahs-N~l~~fPe~~~l~  452 (1081)
T KOG0618|consen  383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP---------DTVANLGRLHTLRAHS-NQLLSFPELAQLP  452 (1081)
T ss_pred             cceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh---------HHHHhhhhhHHHhhcC-CceeechhhhhcC
Confidence            34444444443222222222344445555555555444332         1223344455443211 2244445566777


Q ss_pred             CccEEeEecccccceeccccccccccccccccccccCcccEEecccccc
Q 046682          114 ILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRN  162 (236)
Q Consensus       114 ~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~  162 (236)
                      +|+.+++ +|.++..+.-.            ....-|+|++|++.+-+.
T Consensus       453 qL~~lDl-S~N~L~~~~l~------------~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  453 QLKVLDL-SCNNLSEVTLP------------EALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             cceEEec-ccchhhhhhhh------------hhCCCcccceeeccCCcc
Confidence            8888877 46667655421            011127888888877654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.82  E-value=0.0016  Score=57.33  Aligned_cols=82  Identities=17%  Similarity=0.213  Sum_probs=38.2

Q ss_pred             cccceEEEEeccCCCCccc-cchhhcccCCceeecCC---ccceeeecccccccccCccCCCCccEEEEecCCCCCcch-
Q 046682           33 VSITQFVLVYHCKSAPFNL-LHLAYMENLQELDLEDI---NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT-  107 (236)
Q Consensus        33 ~~~L~~L~l~~c~~~~~~~-~~l~~l~~L~~L~i~~c---~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~-  107 (236)
                      .+.|+...+.+|.-..... ...+.+++++.|+++.+   +...+.         .-...||+|+.|+++.- ++.... 
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~---------~i~eqLp~Le~LNls~N-rl~~~~~  189 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVL---------KIAEQLPSLENLNLSSN-RLSNFIS  189 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHH---------HHHHhcccchhcccccc-cccCCcc
Confidence            3556666666664211100 12455666666666655   333220         01124666666666432 222210 


Q ss_pred             --hhhcccCccEEeEeccc
Q 046682          108 --WLVFVQILKQLRIVFCT  124 (236)
Q Consensus       108 --~l~~lp~L~~L~i~~C~  124 (236)
                        .-..+++|+.|.++.|.
T Consensus       190 s~~~~~l~~lK~L~l~~CG  208 (505)
T KOG3207|consen  190 SNTTLLLSHLKQLVLNSCG  208 (505)
T ss_pred             ccchhhhhhhheEEeccCC
Confidence              01245666666666664

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=95.44  E-value=0.0029  Score=49.48  Aligned_cols=108  Identities=18%  Similarity=0.226  Sum_probs=71.5

Q ss_pred             cchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch-hhhcccCccEEeEecccccceec
Q 046682           52 LHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT-WLVFVQILKQLRIVFCTEMEEII  130 (236)
Q Consensus        52 ~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~-~l~~lp~L~~L~i~~C~~L~~i~  130 (236)
                      +.+-.+.+...|.++.+.+..+         +|.+..+.+|+.|++++- .++.++ .+.++|.|+.|.++ ...+.-++
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~~v---------ppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvg-mnrl~~lp   95 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLTVV---------PPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVG-MNRLNILP   95 (264)
T ss_pred             ccccchhhhhhhhcccCceeec---------CCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecc-hhhhhcCc
Confidence            3345667778888877744433         456667888888888775 567765 56788888888885 33333222


Q ss_pred             cccccccccccccccccccCcccEEecccc-ccccccCCCCCCCCCccEEeEeC
Q 046682          131 SVDKLRDISEIIGSEHNFFAQLESLTIKWG-RNLKSVYPNPLPLPKLKKIQVRG  183 (236)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~-~~L~~i~~~~~~~p~L~~L~i~~  183 (236)
                                   ..+++||.|+.|++.+- -+=.++++..+.+..|+.|++.+
T Consensus        96 -------------rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d  136 (264)
T KOG0617|consen   96 -------------RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD  136 (264)
T ss_pred             -------------cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC
Confidence                         46778999999999642 22234555556667777776665

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.88  E-value=0.02  Score=26.77  Aligned_cols=17  Identities=29%  Similarity=0.667  Sum_probs=9.6

Q ss_pred             CCccEEeEeCCCCCCCcC
Q 046682          174 PKLKKIQVRGCPQLKKLP  191 (236)
Q Consensus       174 p~L~~L~i~~C~~L~~lp  191 (236)
                      |+|+.|++++|. |+.+|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            467777888776 77766

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=94.24  E-value=0.0048  Score=59.04  Aligned_cols=41  Identities=32%  Similarity=0.445  Sum_probs=28.4

Q ss_pred             cccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCCCC
Q 046682          145 EHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGCPQ  186 (236)
Q Consensus       145 ~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~  186 (236)
                      .+..+|.|+.++++ |.+|+.+... ....|.|++|++++=+.
T Consensus       447 e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  447 ELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCcc
Confidence            44567888888886 5667665432 33448999999998653

>PLN03150 hypothetical protein; Provisional

Probab=93.86  E-value=0.12  Score=48.65  Aligned_cols=92  Identities=15%  Similarity=0.117  Sum_probs=50.6

Q ss_pred             ccCCCCccEEEEecCCCCC-cch-hhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccc
Q 046682           86 QSGFRSLDRVVISSCKKMK-DLT-WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNL  163 (236)
Q Consensus        86 ~~~l~~L~~L~i~~c~~l~-~l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L  163 (236)
                      ...+++|+.|+++++ .+. .++ .+..+++|+.|+++++.--..++             ..+..+++|+.|++++..--
T Consensus       438 i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-------------~~l~~L~~L~~L~Ls~N~l~  503 (623)
T PLN03150        438 ISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-------------ESLGQLTSLRILNLNGNSLS  503 (623)
T ss_pred             HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCc-------------hHHhcCCCCCEEECcCCccc
Confidence            455677777777776 344 333 35677777777777653221222             24456777888887765422


Q ss_pred             cccCCCCC-CCCCccEEeEeCCCCCCCcC
Q 046682          164 KSVYPNPL-PLPKLKKIQVRGCPQLKKLP  191 (236)
Q Consensus       164 ~~i~~~~~-~~p~L~~L~i~~C~~L~~lp  191 (236)
                      ..++.... .+.++..+.+.+.+.+...|
T Consensus       504 g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        504 GRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             ccCChHHhhccccCceEEecCCccccCCC
Confidence            23332211 12345566666665555444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.40  E-value=0.016  Score=52.00  Aligned_cols=114  Identities=19%  Similarity=0.156  Sum_probs=56.8

Q ss_pred             ccceEEEEeccCCCCc--cccchhhcccCCceeecCC--ccceeeecccccccccCccCCCCccEEEEecCCCCCcch--
Q 046682           34 SITQFVLVYHCKSAPF--NLLHLAYMENLQELDLEDI--NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT--  107 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~--~~~~l~~l~~L~~L~i~~c--~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--  107 (236)
                      +.++.+.+.+|.....  ........++|+.|++.+|  ....... ..    .......++|++|++..|..+.+..  
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~----~~~~~~~~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL-LL----LLLLSICRKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh-Hh----hhhhhhcCCcCccchhhhhccCchhHH
Confidence            4566666666644211  0122345566666666663  2111100 00    0111234667777777776555432  


Q ss_pred             hhh-cccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccc
Q 046682          108 WLV-FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNL  163 (236)
Q Consensus       108 ~l~-~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L  163 (236)
                      .+. .+|+|++|.+.+|..++.-.     ..      ......|+|+.|+|++|..+
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt~~g-----l~------~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLTDEG-----LV------SIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HHHhhCCCcceEccCCCCccchhH-----HH------HHHHhcCcccEEeeecCccc
Confidence            222 36777777777776632211     00      12235667777777777765

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.30  E-value=0.004  Score=52.17  Aligned_cols=14  Identities=14%  Similarity=0.105  Sum_probs=7.3

Q ss_pred             ccCcccEEeccccc
Q 046682          148 FFAQLESLTIKWGR  161 (236)
Q Consensus       148 ~~p~L~~L~l~~~~  161 (236)
                      ++|+|+.|+|..-|
T Consensus        86 nlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   86 NLPSLRTLWLDENP   99 (388)
T ss_pred             cCchhhhHhhccCC
Confidence            45555555555443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.71  E-value=0.028  Score=49.45  Aligned_cols=106  Identities=13%  Similarity=0.081  Sum_probs=52.2

Q ss_pred             cccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccc-hhhcccCCceeecCCccceeeeccccccc
Q 046682            4 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLH-LAYMENLQELDLEDINLEEMKIDSTEEVK   82 (236)
Q Consensus         4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~-l~~l~~L~~L~i~~c~le~l~~~~~~~~~   82 (236)
                      +..+++|..|+++..-   +-++..-..-...||.|+|+.-....+  +. +-.+..|+.+-.++..+..+..+      
T Consensus       431 l~~l~kLt~L~L~NN~---Ln~LP~e~~~lv~Lq~LnlS~NrFr~l--P~~~y~lq~lEtllas~nqi~~vd~~------  499 (565)
T KOG0472|consen  431 LSQLQKLTFLDLSNNL---LNDLPEEMGSLVRLQTLNLSFNRFRML--PECLYELQTLETLLASNNQIGSVDPS------  499 (565)
T ss_pred             HHhhhcceeeecccch---hhhcchhhhhhhhhheecccccccccc--hHHHhhHHHHHHHHhccccccccChH------
Confidence            4556666666655321   222211111124577777776543222  21 12223344433333344433221      


Q ss_pred             ccCccCCCCccEEEEecCCCCCcch-hhhcccCccEEeEecc
Q 046682           83 KLFQSGFRSLDRVVISSCKKMKDLT-WLVFVQILKQLRIVFC  123 (236)
Q Consensus        83 ~~~~~~l~~L~~L~i~~c~~l~~l~-~l~~lp~L~~L~i~~C  123 (236)
                        ....+.+|..|++.+- .+..+| .++++.+|++|.+++-
T Consensus       500 --~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gN  538 (565)
T KOG0472|consen  500 --GLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGN  538 (565)
T ss_pred             --HhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCC
Confidence              2345677777777553 455554 3567788888877764

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.18  E-value=0.0034  Score=52.54  Aligned_cols=76  Identities=13%  Similarity=0.108  Sum_probs=40.6

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCc---chhhh
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKD---LTWLV  110 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~---l~~l~  110 (236)
                      .+.+.|+.+||.-..+  +-...|+.|+.|.++-+.+.++.          +.....+|++|++..- .+.+   +.-+.
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~----------pl~rCtrLkElYLRkN-~I~sldEL~YLk   85 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA----------PLQRCTRLKELYLRKN-CIESLDELEYLK   85 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch----------hHHHHHHHHHHHHHhc-ccccHHHHHHHh
Confidence            3556677777742222  44567778887777655333221          1123455666665321 2333   23455


Q ss_pred             cccCccEEeEec
Q 046682          111 FVQILKQLRIVF  122 (236)
Q Consensus       111 ~lp~L~~L~i~~  122 (236)
                      .+|+|..|+|..
T Consensus        86 nlpsLr~LWL~E   97 (388)
T KOG2123|consen   86 NLPSLRTLWLDE   97 (388)
T ss_pred             cCchhhhHhhcc
Confidence            667777776654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=92.15  E-value=0.15  Score=45.01  Aligned_cols=136  Identities=18%  Similarity=0.231  Sum_probs=67.5

Q ss_pred             cceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhh-ccc
Q 046682           35 ITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLV-FVQ  113 (236)
Q Consensus        35 ~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~-~lp  113 (236)
                      +|+.|++.+-.-..+. ..+..+++|+.|.+.++.+.++..         .....++|+.|++++. ++..++... .+.
T Consensus       141 nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l~~---------~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~  209 (394)
T COG4886         141 NLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSDLPK---------LLSNLSNLNNLDLSGN-KISDLPPEIELLS  209 (394)
T ss_pred             hcccccccccchhhhh-hhhhccccccccccCCchhhhhhh---------hhhhhhhhhheeccCC-ccccCchhhhhhh
Confidence            6777777665332221 246677888888888775544421         1114567777777665 566665442 333


Q ss_pred             CccEEeEecccccceeccccc--cc-----cccccc--cccccccCcccEEeccccccccccCCCCCCCCCccEEeEeC
Q 046682          114 ILKQLRIVFCTEMEEIISVDK--LR-----DISEII--GSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRG  183 (236)
Q Consensus       114 ~L~~L~i~~C~~L~~i~~~~~--~~-----~~~~~~--~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~  183 (236)
                      .|++|.+.+-..++.+.....  ..     ......  ...+..+++|++|.+.+. .+..+.. ...+.+|+.|++.+
T Consensus       210 ~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~  286 (394)
T COG4886         210 ALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSG  286 (394)
T ss_pred             hhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccc-ccccccc-ccccCccCEEeccC
Confidence            366666664422221110000  00     000000  023445566777776542 2333333 34456677776665

>PLN03150 hypothetical protein; Provisional

Probab=92.02  E-value=0.27  Score=46.34  Aligned_cols=88  Identities=13%  Similarity=0.161  Sum_probs=59.9

Q ss_pred             ccEEEEecCCCCCc-ch-hhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCC
Q 046682           92 LDRVVISSCKKMKD-LT-WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN  169 (236)
Q Consensus        92 L~~L~i~~c~~l~~-l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~  169 (236)
                      ++.|++.++ .+.. ++ .+..+++|+.|+++++.--..+.             ..+..+++|+.|++++..--..++..
T Consensus       420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP-------------~~~~~l~~L~~LdLs~N~lsg~iP~~  485 (623)
T PLN03150        420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIP-------------PSLGSITSLEVLDLSYNSFNGSIPES  485 (623)
T ss_pred             EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCC-------------hHHhCCCCCCEEECCCCCCCCCCchH
Confidence            667777665 3443 22 36688999999998864222222             24567899999999886433345555


Q ss_pred             CCCCCCccEEeEeCCCCCCCcCCC
Q 046682          170 PLPLPKLKKIQVRGCPQLKKLPVN  193 (236)
Q Consensus       170 ~~~~p~L~~L~i~~C~~L~~lp~~  193 (236)
                      ...+++|+.|++.++.--..+|..
T Consensus       486 l~~L~~L~~L~Ls~N~l~g~iP~~  509 (623)
T PLN03150        486 LGQLTSLRILNLNGNSLSGRVPAA  509 (623)
T ss_pred             HhcCCCCCEEECcCCcccccCChH
Confidence            567899999999998655466654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.90  E-value=0.039  Score=44.11  Aligned_cols=65  Identities=18%  Similarity=0.268  Sum_probs=43.8

Q ss_pred             ccceEEEEeccCCCC-ccccch-hhcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCCCCCcc
Q 046682           34 SITQFVLVYHCKSAP-FNLLHL-AYMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDL  106 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~-~~~~~l-~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l  106 (236)
                      ..+++|.+.+|.... .-+.-+ +-.++|+.|+|++| ++.+--+.        ....|++|+.|.|.+.+...+.
T Consensus       125 ~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~--------~L~~lknLr~L~l~~l~~v~~~  192 (221)
T KOG3864|consen  125 RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA--------CLLKLKNLRRLHLYDLPYVANL  192 (221)
T ss_pred             chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH--------HHHHhhhhHHHHhcCchhhhch
Confidence            678889999997511 100112 13489999999999 87754221        2346899999999887776654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.38  E-value=0.07  Score=47.06  Aligned_cols=40  Identities=18%  Similarity=0.348  Sum_probs=33.5

Q ss_pred             cccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCC
Q 046682          145 EHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCP  185 (236)
Q Consensus       145 ~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~  185 (236)
                      .+..+.+|.+|++.+ ..++.++.+.+.+.+|++|.+.+=|
T Consensus       500 ~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  500 GLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             HhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence            467788999999875 5688899888899999999999854

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=91.09  E-value=0.082  Score=46.57  Aligned_cols=144  Identities=16%  Similarity=0.165  Sum_probs=83.5

Q ss_pred             ccceEEEEeccCCCCccccch-hhcc-cCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhh-
Q 046682           34 SITQFVLVYHCKSAPFNLLHL-AYME-NLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLV-  110 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l-~~l~-~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~-  110 (236)
                      ..+..|.+.+-....+  +.. ..+. +|+.|++++..++.+.         .....+++|+.|.+.++ .+.+++... 
T Consensus       116 ~~l~~L~l~~n~i~~i--~~~~~~~~~nL~~L~l~~N~i~~l~---------~~~~~l~~L~~L~l~~N-~l~~l~~~~~  183 (394)
T COG4886         116 TNLTSLDLDNNNITDI--PPLIGLLKSNLKELDLSDNKIESLP---------SPLRNLPNLKNLDLSFN-DLSDLPKLLS  183 (394)
T ss_pred             cceeEEecCCcccccC--ccccccchhhcccccccccchhhhh---------hhhhccccccccccCCc-hhhhhhhhhh
Confidence            4577777776654444  333 3443 8999999988666552         13457899999999998 688887765 


Q ss_pred             cccCccEEeEecccccceeccc---cccccccccc-------cccccccCcccEEeccccccccccCCCCCCCCCccEEe
Q 046682          111 FVQILKQLRIVFCTEMEEIISV---DKLRDISEII-------GSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQ  180 (236)
Q Consensus       111 ~lp~L~~L~i~~C~~L~~i~~~---~~~~~~~~~~-------~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~  180 (236)
                      .+++|+.|++++. ++..+...   ..........       ...+..+.++..+.+.+. .++.+......+++++.|.
T Consensus       184 ~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~~l~~l~~L~  261 (394)
T COG4886         184 NLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLD  261 (394)
T ss_pred             hhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc-eeeeccchhccccccceec
Confidence            8999999999874 45444432   1100000000       012233444444443221 1222223344567788888


Q ss_pred             EeCCCCCCCcCC
Q 046682          181 VRGCPQLKKLPV  192 (236)
Q Consensus       181 i~~C~~L~~lp~  192 (236)
                      +.++ ++..++.
T Consensus       262 ~s~n-~i~~i~~  272 (394)
T COG4886         262 LSNN-QISSISS  272 (394)
T ss_pred             cccc-ccccccc
Confidence            8876 5555543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.98  E-value=0.072  Score=45.26  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=14.2

Q ss_pred             CCCCCccEEeEeCCCCCCCcCCC
Q 046682          171 LPLPKLKKIQVRGCPQLKKLPVN  193 (236)
Q Consensus       171 ~~~p~L~~L~i~~C~~L~~lp~~  193 (236)
                      ..||+|..|.+.+-|-...+--+
T Consensus       246 n~f~~l~dlRv~~~Pl~d~l~~~  268 (418)
T KOG2982|consen  246 NGFPQLVDLRVSENPLSDPLRGG  268 (418)
T ss_pred             cCCchhheeeccCCcccccccCC
Confidence            35777777777766655554443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=90.21  E-value=0.16  Score=42.05  Aligned_cols=81  Identities=20%  Similarity=0.280  Sum_probs=38.6

Q ss_pred             cceEEEEeccCCCCccccchhhcccCCceeecCC--ccceeeecccccccccCccCCCCccEEEEecCCCCCc---chhh
Q 046682           35 ITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI--NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKD---LTWL  109 (236)
Q Consensus        35 ~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c--~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~---l~~l  109 (236)
                      .|+.|++.++.-.++  ..++.|++|+.|.++.+  .+. +.++       ......|+|+++++++- +++.   +.++
T Consensus        44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~-~~l~-------vl~e~~P~l~~l~ls~N-ki~~lstl~pl  112 (260)
T KOG2739|consen   44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVS-GGLE-------VLAEKAPNLKVLNLSGN-KIKDLSTLRPL  112 (260)
T ss_pred             chhhhhhhccceeec--ccCCCcchhhhhcccCCccccc-ccce-------ehhhhCCceeEEeecCC-ccccccccchh
Confidence            445555555532233  44556666666666654  211 1000       11123366666666543 3332   3344


Q ss_pred             hcccCccEEeEeccccc
Q 046682          110 VFVQILKQLRIVFCTEM  126 (236)
Q Consensus       110 ~~lp~L~~L~i~~C~~L  126 (236)
                      ..+++|..|++.+|+-.
T Consensus       113 ~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVT  129 (260)
T ss_pred             hhhcchhhhhcccCCcc
Confidence            45566666666666533

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=87.96  E-value=0.93  Score=36.48  Aligned_cols=60  Identities=18%  Similarity=0.287  Sum_probs=26.2

Q ss_pred             hhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecC--CCCCcchhhhcccCccEEeEe
Q 046682           54 LAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSC--KKMKDLTWLVFVQILKQLRIV  121 (236)
Q Consensus        54 l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c--~~l~~l~~l~~lp~L~~L~i~  121 (236)
                      ++.++.|.+|.+.++++..|.-+-        ...+++|+.|.+.+-  .++.++..+..+|.|++|.+-
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L--------~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDL--------DTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             CCCccccceEEecCCcceeeccch--------hhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            444455555555555444331110        112455555555442  123333344455555555443

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=87.22  E-value=0.4  Score=24.80  Aligned_cols=17  Identities=24%  Similarity=0.831  Sum_probs=12.7

Q ss_pred             CCCccEEeEeCCCCCCC
Q 046682          173 LPKLKKIQVRGCPQLKK  189 (236)
Q Consensus       173 ~p~L~~L~i~~C~~L~~  189 (236)
                      +|+|++|.+++|+++..
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            46788888888887654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=87.14  E-value=0.36  Score=43.11  Aligned_cols=76  Identities=22%  Similarity=0.239  Sum_probs=37.1

Q ss_pred             ccceEEEEeccCCCCccccc-hhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhcc
Q 046682           34 SITQFVLVYHCKSAPFNLLH-LAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFV  112 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~-l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~l  112 (236)
                      +.+..|.+++-.-..+  .+ +..+++|+.|.++++.+..+.          +...++.|+.|++.+. .+..+..+..+
T Consensus        95 ~~l~~l~l~~n~i~~i--~~~l~~~~~L~~L~ls~N~I~~i~----------~l~~l~~L~~L~l~~N-~i~~~~~~~~l  161 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKI--ENLLSSLVNLQVLDLSFNKITKLE----------GLSTLTLLKELNLSGN-LISDISGLESL  161 (414)
T ss_pred             cceeeeeccccchhhc--ccchhhhhcchheecccccccccc----------chhhccchhhheeccC-cchhccCCccc
Confidence            4445555544432233  44 566677777777766443331          1223444555555544 34444444445


Q ss_pred             cCccEEeEec
Q 046682          113 QILKQLRIVF  122 (236)
Q Consensus       113 p~L~~L~i~~  122 (236)
                      ++|+.+++++
T Consensus       162 ~~L~~l~l~~  171 (414)
T KOG0531|consen  162 KSLKLLDLSY  171 (414)
T ss_pred             hhhhcccCCc
Confidence            5555555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=86.41  E-value=0.36  Score=40.03  Aligned_cols=136  Identities=15%  Similarity=0.071  Sum_probs=76.5

Q ss_pred             cceEEEEeccCCCCccccc-hhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCC-CCC-cch-hhh
Q 046682           35 ITQFVLVYHCKSAPFNLLH-LAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCK-KMK-DLT-WLV  110 (236)
Q Consensus        35 ~L~~L~l~~c~~~~~~~~~-l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~-~l~-~l~-~l~  110 (236)
                      ..+.+.+.+|....-.+.. ...+..|+.|.+.++.+.++          .....+|+|+.|.++.-. +.. .+. .+.
T Consensus        19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~----------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e   88 (260)
T KOG2739|consen   19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTL----------TNFPKLPKLKKLELSDNYRRVSGGLEVLAE   88 (260)
T ss_pred             hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeec----------ccCCCcchhhhhcccCCcccccccceehhh
Confidence            4455566666542111122 23456777777777744433          123457889999885430 111 122 234


Q ss_pred             cccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCC---CCCCCCCccEEeEeCCCCC
Q 046682          111 FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP---NPLPLPKLKKIQVRGCPQL  187 (236)
Q Consensus       111 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~---~~~~~p~L~~L~i~~C~~L  187 (236)
                      .+|+|++|.+++- +++. +..        .  ..+..+++|..|.+.+|+-.+.--.   -..-+|+|++|+-.++..=
T Consensus        89 ~~P~l~~l~ls~N-ki~~-lst--------l--~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~  156 (260)
T KOG2739|consen   89 KAPNLKVLNLSGN-KIKD-LST--------L--RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE  156 (260)
T ss_pred             hCCceeEEeecCC-cccc-ccc--------c--chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence            5699999988753 2322 110        0  3455677888888888876652111   1234789999988888665


Q ss_pred             CCcCC
Q 046682          188 KKLPV  192 (236)
Q Consensus       188 ~~lp~  192 (236)
                      ..-+.
T Consensus       157 Ea~~~  161 (260)
T KOG2739|consen  157 EAPEA  161 (260)
T ss_pred             ccccc
Confidence            44443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=86.07  E-value=0.31  Score=24.21  Aligned_cols=18  Identities=22%  Similarity=0.541  Sum_probs=13.3

Q ss_pred             CccEEeEeCCCCCCCcCCC
Q 046682          175 KLKKIQVRGCPQLKKLPVN  193 (236)
Q Consensus       175 ~L~~L~i~~C~~L~~lp~~  193 (236)
                      +|++|++++| +++.+|.+
T Consensus         1 ~L~~Ldls~n-~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSS   18 (22)
T ss_dssp             TESEEEETSS-EESEEGTT
T ss_pred             CccEEECCCC-cCEeCChh
Confidence            4777888888 77777765

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=85.02  E-value=0.33  Score=43.34  Aligned_cols=103  Identities=19%  Similarity=0.148  Sum_probs=59.4

Q ss_pred             cccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccc
Q 046682            4 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKK   83 (236)
Q Consensus         4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~   83 (236)
                      +..+++|..+...-.   .++.+.....-..+|+.|.+++-.-..+  ..+..++.|+.|++.++.+..+.         
T Consensus        91 l~~~~~l~~l~l~~n---~i~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~---------  156 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDN---KIEKIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDIS---------  156 (414)
T ss_pred             cccccceeeeecccc---chhhcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhcc---------
Confidence            555666666665532   2444433122236788888876643333  55677778888888888554441         


Q ss_pred             cCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEec
Q 046682           84 LFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVF  122 (236)
Q Consensus        84 ~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~  122 (236)
                       ....+.+|+.+++.++ .+..+..  +..+.+|+.+++.+
T Consensus       157 -~~~~l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~~l~l~~  195 (414)
T KOG0531|consen  157 -GLESLKSLKLLDLSYN-RIVDIENDELSELISLEELDLGG  195 (414)
T ss_pred             -CCccchhhhcccCCcc-hhhhhhhhhhhhccchHHHhccC
Confidence             1123666777776665 3444444  35666666666654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=81.11  E-value=0.12  Score=49.01  Aligned_cols=80  Identities=18%  Similarity=0.140  Sum_probs=40.7

Q ss_pred             CcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhh
Q 046682           30 PKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWL  109 (236)
Q Consensus        30 ~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l  109 (236)
                      .++.+.+++|+++...-...  ..+..+++|++|+|+.+.+..++-  .      +... ..|..|.|.+- .++.+-.+
T Consensus       183 Lqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~--l------~~~g-c~L~~L~lrnN-~l~tL~gi  250 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQ--L------SMVG-CKLQLLNLRNN-ALTTLRGI  250 (1096)
T ss_pred             HHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccc--c------chhh-hhheeeeeccc-HHHhhhhH
Confidence            33445666666665533333  345666777777776553322210  0      0011 12555655543 45555455


Q ss_pred             hcccCccEEeEe
Q 046682          110 VFVQILKQLRIV  121 (236)
Q Consensus       110 ~~lp~L~~L~i~  121 (236)
                      .++.+|..|+++
T Consensus       251 e~LksL~~LDls  262 (1096)
T KOG1859|consen  251 ENLKSLYGLDLS  262 (1096)
T ss_pred             Hhhhhhhccchh
Confidence            566666666665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 31/198 (15%), Positives = 65/198 (32%), Gaps = 39/198 (19%)

Query: 42  YHCKSAPFNLLHLAYMENL-QELDLEDINLEEMKIDSTEEVKKLFQSGFR--SLDRVVIS 98
           Y  K    ++L + + +      D +D+      I S EE+  +  S        R+  +
Sbjct: 16  YQYK----DILSV-FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 99  SCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIK 158
              K ++     FV+ + ++   F   M  I +  +             +  Q + L   
Sbjct: 71  LLSKQEE-MVQKFVEEVLRINYKFL--MSPIKTEQRQPS-----MMTRMYIEQRDRL--- 119

Query: 159 WGRNLKSVYPNPLPLPKLKKI-QVRGCPQLKKLPVNSSSVKERRVVIEGE----KEW--W 211
           +  N   V+     + +L+   ++R    L +L         + V+I+G     K W   
Sbjct: 120 YNDN--QVFA-KYNVSRLQPYLKLRQA--LLELR------PAKNVLIDGVLGSGKTWVAL 168

Query: 212 EELQWEDQATQNAFSSGV 229
           +         Q      +
Sbjct: 169 DVCL--SYKVQCKMDFKI 184

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.53
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.41
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.2
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.2
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.1
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.03
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.01
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.0
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.99
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.99
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.99
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.98
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.97
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.97
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.96
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.94
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.88
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.85
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.85
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.84
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.84
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.81
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.81
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.81
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.8
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.8
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.78
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.78
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.77
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.77
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.76
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.76
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.76
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.75
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.74
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.74
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.73
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.72
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.71
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.71
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.7
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.67
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.67
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.66
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.65
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.65
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.64
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.63
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.63
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.62
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.62
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.62
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.61
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.61
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.6
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.57
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.57
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.57
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.56
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.55
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.54
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.53
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.53
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.53
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.52
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.52
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.51
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.5
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.5
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.46
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.44
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.44
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.44
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.43
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.4
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.39
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.38
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.35
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.33
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.33
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.32
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.31
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.29
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.28
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.25
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.19
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.17
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.16
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.13
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.1
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.04
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.97
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.96
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.94
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.92
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.8
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.72
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.71
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.7
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.65
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.55
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.52
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.43
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.27
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.1
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.26
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.15
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	94.67
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	93.61
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	92.66
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	91.43
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	89.37
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	88.99

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.53  E-value=4.7e-14  Score=120.28  Aligned_cols=209  Identities=16%  Similarity=0.159  Sum_probs=121.0

Q ss_pred             ccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCC-ccceeeecccccc
Q 046682            3 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTEEV   81 (236)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~   81 (236)
                      ++..+.+|++|+++.....   .+.....-.++|+.|+++++.-..+ ...+..+++|+.|++++| .+..++.......
T Consensus        99 ~l~~l~~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~  174 (328)
T 4fcg_A           99 QAFRLSHLQHMTIDAAGLM---ELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPEPLASTD  174 (328)
T ss_dssp             CGGGGTTCSEEEEESSCCC---CCCSCGGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred             hhhhCCCCCEEECCCCCcc---chhHHHhccCCCCEEECCCCccccC-cHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence            3556788888888754322   2222222236888888888854433 135778888888888887 4444422111000


Q ss_pred             cccCccCCCCccEEEEecCCCCCcch-hhhcccCccEEeEecccccceeccccccc---c--------cccccccccccc
Q 046682           82 KKLFQSGFRSLDRVVISSCKKMKDLT-WLVFVQILKQLRIVFCTEMEEIISVDKLR---D--------ISEIIGSEHNFF  149 (236)
Q Consensus        82 ~~~~~~~l~~L~~L~i~~c~~l~~l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~---~--------~~~~~~~~~~~~  149 (236)
                      .......+++|+.|+++++ ++..++ .+..+++|++|++++|. +..++..-...   .        ..+.....+..+
T Consensus       175 ~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l  252 (328)
T 4fcg_A          175 ASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR  252 (328)
T ss_dssp             -CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred             chhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence            0001122455555555554 343332 23445555555555442 22221100000   0        000000345678


Q ss_pred             CcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEEechHHHHhhccCCc
Q 046682          150 AQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVIEGEKEWWEELQWED  218 (236)
Q Consensus       150 p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~~~~~w~~~l~w~~  218 (236)
                      ++|++|+++++..+..++.....+++|+.|++++|+.+..+|...... ++++.+.....+...+.+..
T Consensus       253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L-~~L~~l~l~~~~~~~l~~~~  320 (328)
T 4fcg_A          253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL-PANCIILVPPHLQAQLDQHR  320 (328)
T ss_dssp             CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS-CTTCEEECCGGGSCC-----
T ss_pred             CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc-cCceEEeCCHHHHHHHhhhh
Confidence            999999999999888888777789999999999999999999876654 78888887776666665543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.41  E-value=3.2e-12  Score=108.86  Aligned_cols=183  Identities=15%  Similarity=0.168  Sum_probs=127.7

Q ss_pred             CcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCc
Q 046682            7 LKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQ   86 (236)
Q Consensus         7 L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~   86 (236)
                      ..+++.|+++.....   .+.....-.++|+.|+++++.-..++ ..+..+++|++|++++|.+..++         ...
T Consensus        80 ~~~l~~L~L~~n~l~---~lp~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp---------~~l  146 (328)
T 4fcg_A           80 QPGRVALELRSVPLP---QFPDQAFRLSHLQHMTIDAAGLMELP-DTMQQFAGLETLTLARNPLRALP---------ASI  146 (328)
T ss_dssp             STTCCEEEEESSCCS---SCCSCGGGGTTCSEEEEESSCCCCCC-SCGGGGTTCSEEEEESCCCCCCC---------GGG
T ss_pred             ccceeEEEccCCCch---hcChhhhhCCCCCEEECCCCCccchh-HHHhccCCCCEEECCCCccccCc---------HHH
Confidence            467888888754322   33332222479999999998654332 34789999999999999655552         234


Q ss_pred             cCCCCccEEEEecCCCCCcchh-h---------hcccCccEEeEecccccceeccccccc---c--------cccccccc
Q 046682           87 SGFRSLDRVVISSCKKMKDLTW-L---------VFVQILKQLRIVFCTEMEEIISVDKLR---D--------ISEIIGSE  145 (236)
Q Consensus        87 ~~l~~L~~L~i~~c~~l~~l~~-l---------~~lp~L~~L~i~~C~~L~~i~~~~~~~---~--------~~~~~~~~  145 (236)
                      ..+++|+.|++++|..+..++. +         ..+++|++|+++++ .++.++..-...   .        ..+.. ..
T Consensus       147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~-~~  224 (328)
T 4fcg_A          147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALG-PA  224 (328)
T ss_dssp             GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCC-GG
T ss_pred             hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCc-hh
Confidence            5689999999999977776643 2         24999999999987 454443211110   0        00111 34


Q ss_pred             ccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEEe
Q 046682          146 HNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVIE  205 (236)
Q Consensus       146 ~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  205 (236)
                      +..+++|++|+++++.....++.....+++|+.|++.+|..+..+|...... ++|+.+.
T Consensus       225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l-~~L~~L~  283 (328)
T 4fcg_A          225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL-TQLEKLD  283 (328)
T ss_dssp             GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC-TTCCEEE
T ss_pred             hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC-CCCCEEe
Confidence            5678999999999988888887777789999999999999999999765443 5666553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.20  E-value=5.7e-11  Score=93.62  Aligned_cols=130  Identities=15%  Similarity=0.280  Sum_probs=67.5

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCc--chhhhc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKD--LTWLVF  111 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~--l~~l~~  111 (236)
                      ++++.|+++++.-..+  +.+..+++|++|++++|.++.+          +....+++|+.|+++++ .+..  ...+..
T Consensus        44 ~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~l~~n~~~~~----------~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~  110 (197)
T 4ezg_A           44 NSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNY----------NPISGLSNLERLRIMGK-DVTSDKIPNLSG  110 (197)
T ss_dssp             HTCCEEEEESSCCSCC--TTGGGCTTCSEEEEESCCCSCC----------GGGTTCTTCCEEEEECT-TCBGGGSCCCTT
T ss_pred             CCccEEeccCCCccCh--HHHhcCCCCCEEEccCCCCCcc----------hhhhcCCCCCEEEeECC-ccCcccChhhcC
Confidence            4566666666533322  3455666666666666633322          12234566666666665 3443  233455


Q ss_pred             ccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcC
Q 046682          112 VQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLP  191 (236)
Q Consensus       112 lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp  191 (236)
                      +++|++|++++|. +.....            ..+..+++|++|+++++..+..++ ....+++|+.|++.+| ++..+|
T Consensus       111 l~~L~~L~Ls~n~-i~~~~~------------~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~  175 (197)
T 4ezg_A          111 LTSLTLLDISHSA-HDDSIL------------TKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR  175 (197)
T ss_dssp             CTTCCEEECCSSB-CBGGGH------------HHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT
T ss_pred             CCCCCEEEecCCc-cCcHhH------------HHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH
Confidence            6666666666552 211100            133455666666666655444443 2334566666666665 344444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.20  E-value=7.7e-11  Score=97.48  Aligned_cols=133  Identities=17%  Similarity=0.216  Sum_probs=70.3

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVF  111 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~  111 (236)
                      ++|+.|++.++.-..+  ..+..+++|++|.+++|.+..+...        ....+++|+.|+++++ ++..++.  +..
T Consensus        63 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~L~~n-~l~~~~~~~~~~  131 (272)
T 3rfs_A           63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNG--------VFDKLTNLKELVLVEN-QLQSLPDGVFDK  131 (272)
T ss_dssp             TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTT--------TTTTCTTCCEEECTTS-CCCCCCTTTTTT
T ss_pred             CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChh--------HhcCCcCCCEEECCCC-cCCccCHHHhcc
Confidence            5677777776643332  4556667777777777644433211        1234666777777666 4555433  455


Q ss_pred             ccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCCC-CCCCCccEEeEeCCCCCCCc
Q 046682          112 VQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNP-LPLPKLKKIQVRGCPQLKKL  190 (236)
Q Consensus       112 lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~~l  190 (236)
                      +++|++|++++| .+..+..            ..+..+++|++|+++++ ++..+.... ..+++|+.|.+++| ++..+
T Consensus       132 l~~L~~L~L~~n-~l~~~~~------------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~  196 (272)
T 3rfs_A          132 LTNLTYLNLAHN-QLQSLPK------------GVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN-QLKSV  196 (272)
T ss_dssp             CTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred             CCCCCEEECCCC-ccCccCH------------HHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCC-cCCcc
Confidence            667777777665 3433321            12334556666666554 244433322 23555666666555 34444


Q ss_pred             CC
Q 046682          191 PV  192 (236)
Q Consensus       191 p~  192 (236)
                      |.
T Consensus       197 ~~  198 (272)
T 3rfs_A          197 PD  198 (272)
T ss_dssp             CT
T ss_pred             CH
Confidence            43

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.14  E-value=2.3e-10  Score=94.59  Aligned_cols=158  Identities=15%  Similarity=0.154  Sum_probs=111.6

Q ss_pred             cccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccc
Q 046682            2 KELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEV   81 (236)
Q Consensus         2 ~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~   81 (236)
                      ..+..+++|++|+++......+..+.   . .++|+.|++.++.-..+....+..+++|++|++++|.+..+..      
T Consensus        57 ~~l~~l~~L~~L~l~~n~l~~~~~l~---~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------  126 (272)
T 3rfs_A           57 QGIQYLPNVRYLALGGNKLHDISALK---E-LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD------  126 (272)
T ss_dssp             TTGGGCTTCCEEECTTSCCCCCGGGT---T-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT------
T ss_pred             cccccCCCCcEEECCCCCCCCchhhc---C-CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH------
Confidence            34667788888887644322233222   2 2689999999986444432346889999999999996655421      


Q ss_pred             cccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccc
Q 046682           82 KKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKW  159 (236)
Q Consensus        82 ~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~  159 (236)
                        .....+++|+.|+++++ .+..++.  +..+++|++|++++| .+..+..            ..+..+++|++|++++
T Consensus       127 --~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~------------~~~~~l~~L~~L~L~~  190 (272)
T 3rfs_A          127 --GVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPE------------GVFDKLTQLKDLRLYQ  190 (272)
T ss_dssp             --TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCS
T ss_pred             --HHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccCH------------HHhcCCccCCEEECCC
Confidence              12356899999999998 6777654  568999999999988 3444331            2346789999999987


Q ss_pred             cccccccCCC-CCCCCCccEEeEeCCCC
Q 046682          160 GRNLKSVYPN-PLPLPKLKKIQVRGCPQ  186 (236)
Q Consensus       160 ~~~L~~i~~~-~~~~p~L~~L~i~~C~~  186 (236)
                      + .++.+... ...+++|+.|++.+++-
T Consensus       191 N-~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          191 N-QLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             S-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             C-cCCccCHHHHhCCcCCCEEEccCCCc
Confidence            6 46666554 35689999999998753

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.14  E-value=2.9e-10  Score=91.98  Aligned_cols=137  Identities=14%  Similarity=0.046  Sum_probs=60.7

Q ss_pred             ccceEEEEeccC-CCCccccchhhcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhc
Q 046682           34 SITQFVLVYHCK-SAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVF  111 (236)
Q Consensus        34 ~~L~~L~l~~c~-~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~  111 (236)
                      ++|+.|++.++. -..+....+..+++|++|++++| .++.+..+        ....+++|+.|++.++ .++.++.+..
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~--------~f~~l~~L~~L~l~~n-~l~~lp~~~~  125 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD--------ALKELPLLKFLGIFNT-GLKMFPDLTK  125 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT--------SEECCTTCCEEEEEEE-CCCSCCCCTT
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH--------HhCCCCCCCEEeCCCC-CCcccccccc
Confidence            455555555553 22221123444555555555553 44433211        1123455566666555 3444443444


Q ss_pred             ccCcc---EEeEecccccceeccccccccccccccccccccCccc-EEeccccccccccCCCCCCCCCccEEeEeCCCCC
Q 046682          112 VQILK---QLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLE-SLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQL  187 (236)
Q Consensus       112 lp~L~---~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~-~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L  187 (236)
                      +++|+   +|+++++..++.+..            ..+..+++|+ .|++++. +++.++...+..++|+.|++.+++.+
T Consensus       126 l~~L~~L~~L~l~~N~~l~~i~~------------~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l  192 (239)
T 2xwt_C          126 VYSTDIFFILEITDNPYMTSIPV------------NAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYL  192 (239)
T ss_dssp             CCBCCSEEEEEEESCTTCCEECT------------TTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTC
T ss_pred             ccccccccEEECCCCcchhhcCc------------ccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCc
Confidence            44454   555555544444432            1223344444 5554432 23334333322344555555555444


Q ss_pred             CCcCC
Q 046682          188 KKLPV  192 (236)
Q Consensus       188 ~~lp~  192 (236)
                      +.+|.
T Consensus       193 ~~i~~  197 (239)
T 2xwt_C          193 TVIDK  197 (239)
T ss_dssp             CEECT
T ss_pred             ccCCH
Confidence            44443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.12  E-value=1.8e-10  Score=96.35  Aligned_cols=157  Identities=15%  Similarity=0.174  Sum_probs=76.4

Q ss_pred             cCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccC
Q 046682            6 GLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLF   85 (236)
Q Consensus         6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~   85 (236)
                      .+.+|+.|+++.+....++.+.    ..++|+.|+++++.-..+  ..+..+++|+.|.+++|.+..+          +.
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~~~----~l~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~----------~~  107 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQGIQ----YLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDL----------SS  107 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGG----GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCG----------GG
T ss_pred             hcCcccEEEccCCCcccChhHh----cCCCCCEEEccCCccCCC--cccccCCCCCEEECCCCcCCCC----------hh
Confidence            3455666655433222222211    125677777776643333  2256667777777766643332          11


Q ss_pred             ccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccc--cc--------cccccccccccccCcccEE
Q 046682           86 QSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDK--LR--------DISEIIGSEHNFFAQLESL  155 (236)
Q Consensus        86 ~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~--~~--------~~~~~~~~~~~~~p~L~~L  155 (236)
                      ...+++|+.|+++++ .+..++.+..+++|++|+++++. +..+.....  ..        .....  ..+..+++|+.|
T Consensus       108 l~~l~~L~~L~L~~n-~i~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~--~~l~~l~~L~~L  183 (291)
T 1h6t_A          108 LKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNL  183 (291)
T ss_dssp             GTTCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred             hccCCCCCEEECCCC-cCCCChhhcCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCCccccc--hhhcCCCccCEE
Confidence            234555555555554 34444444455555555555442 222100000  00        00000  124566777777


Q ss_pred             eccccccccccCCCCCCCCCccEEeEeCC
Q 046682          156 TIKWGRNLKSVYPNPLPLPKLKKIQVRGC  184 (236)
Q Consensus       156 ~l~~~~~L~~i~~~~~~~p~L~~L~i~~C  184 (236)
                      +++++ .++.++. ...+++|+.|++.++
T Consensus       184 ~L~~N-~i~~l~~-l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          184 YLSKN-HISDLRA-LAGLKNLDVLELFSQ  210 (291)
T ss_dssp             ECCSS-CCCBCGG-GTTCTTCSEEEEEEE
T ss_pred             ECCCC-cCCCChh-hccCCCCCEEECcCC
Confidence            77765 3444432 345778888888776

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.11  E-value=1.1e-10  Score=99.29  Aligned_cols=155  Identities=16%  Similarity=0.197  Sum_probs=106.4

Q ss_pred             cccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccc
Q 046682            4 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKK   83 (236)
Q Consensus         4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~   83 (236)
                      +..+++|+.|+++......+..+.    -.+.|+.+.+.++.-...  ..+..+++|++|++++|.+..+.         
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~~~----~l~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~~---------  237 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIEDISPLA----SLTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKITDLS---------  237 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCCCGGGG----GCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG---------
T ss_pred             hccCCCCCEEEccCCccccccccc----CCCccceeecccCCCCCC--chhhcCCcCCEEEccCCccCCCc---------
Confidence            567788888887654333332222    236889999998854433  33778899999999998555432         


Q ss_pred             cCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccc
Q 046682           84 LFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNL  163 (236)
Q Consensus        84 ~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L  163 (236)
                       ....+++|+.|++++| .+..++.+..+++|++|++++| .+..+              ..+..+++|+.|+++++. +
T Consensus       238 -~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~--------------~~~~~l~~L~~L~L~~n~-l  299 (347)
T 4fmz_A          238 -PLANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDI--------------SVLNNLSQLNSLFLNNNQ-L  299 (347)
T ss_dssp             -GGTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCC--------------GGGGGCTTCSEEECCSSC-C
T ss_pred             -chhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-ccCCC--------------hhhcCCCCCCEEECcCCc-C
Confidence             1356889999999888 6777777788899999999887 34433              134567888889888874 3


Q ss_pred             cccC-CCCCCCCCccEEeEeCCCCCCCcCC
Q 046682          164 KSVY-PNPLPLPKLKKIQVRGCPQLKKLPV  192 (236)
Q Consensus       164 ~~i~-~~~~~~p~L~~L~i~~C~~L~~lp~  192 (236)
                      .... .....+++|+.|++++|+ +..++.
T Consensus       300 ~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~  328 (347)
T 4fmz_A          300 GNEDMEVIGGLTNLTTLFLSQNH-ITDIRP  328 (347)
T ss_dssp             CGGGHHHHHTCTTCSEEECCSSS-CCCCGG
T ss_pred             CCcChhHhhccccCCEEEccCCc-cccccC
Confidence            3322 223457888999988886 555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.11  E-value=2.5e-10  Score=96.28  Aligned_cols=98  Identities=17%  Similarity=0.261  Sum_probs=46.1

Q ss_pred             cCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccccccc----------ccccccccccccCcccEEe
Q 046682           87 SGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRD----------ISEIIGSEHNFFAQLESLT  156 (236)
Q Consensus        87 ~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~----------~~~~~~~~~~~~p~L~~L~  156 (236)
                      ..+++|+.|+++++ .+..++.+..+++|++|++++| .+..+........          ....  ..+..+++|++|+
T Consensus       126 ~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  201 (308)
T 1h6u_A          126 AGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVH  201 (308)
T ss_dssp             TTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEE
T ss_pred             cCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCC-cCCCChhhcCCCCCCEEECCCCccCcC--hhhcCCCCCCEEE
Confidence            44566666666655 4555555556666666666655 2332221000000          0000  1234555666666


Q ss_pred             ccccccccccCCCCCCCCCccEEeEeCCCCCCCcC
Q 046682          157 IKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLP  191 (236)
Q Consensus       157 l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp  191 (236)
                      ++++ .+..+.. ...+++|+.|.+.+++ +...|
T Consensus       202 L~~N-~l~~~~~-l~~l~~L~~L~l~~N~-i~~~~  233 (308)
T 1h6u_A          202 LKNN-QISDVSP-LANTSNLFIVTLTNQT-ITNQP  233 (308)
T ss_dssp             CTTS-CCCBCGG-GTTCTTCCEEEEEEEE-EECCC
T ss_pred             ccCC-ccCcccc-ccCCCCCCEEEccCCe-eecCC
Confidence            6554 2333321 3346667777766653 34433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.10  E-value=4.9e-10  Score=98.80  Aligned_cols=188  Identities=18%  Similarity=0.199  Sum_probs=101.5

Q ss_pred             ccccCcCCcceeEEeeehHHHH-HHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccc
Q 046682            3 ELLGLKHLNVLSWSFGSSLAVQ-KFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEV   81 (236)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~l~-~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~   81 (236)
                      .+..+.+|+.|+++......+. ..+  .. .++|+.|+++++.-..+....+..+++|++|+++++.+..+...     
T Consensus        83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~--~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-----  154 (440)
T 3zyj_A           83 SFKHLRHLEILQLSRNHIRTIEIGAF--NG-LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY-----  154 (440)
T ss_dssp             TTSSCSSCCEEECCSSCCCEECGGGG--TT-CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTT-----
T ss_pred             HhhCCCCCCEEECCCCcCCccChhhc--cC-CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHH-----
Confidence            4667888888887643222111 111  11 26788888888754444323467778888888887755544221     


Q ss_pred             cccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccccc----------ccccccccccccc
Q 046682           82 KKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKLR----------DISEIIGSEHNFF  149 (236)
Q Consensus        82 ~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~----------~~~~~~~~~~~~~  149 (236)
                         ....+++|+.|++.+|..+..++.  +..+++|++|+++++ +++.+.......          .........+..+
T Consensus       155 ---~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  230 (440)
T 3zyj_A          155 ---AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL  230 (440)
T ss_dssp             ---TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTC
T ss_pred             ---HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCCccCccChhhhccC
Confidence               123345555555555544444321  334455555555443 222221100000          0000001345677


Q ss_pred             CcccEEeccccccccccCCC-CCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          150 AQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       150 p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      ++|+.|++.+. +++.+... ...+++|+.|+++++ +++.+|........+|+.+
T Consensus       231 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  284 (440)
T 3zyj_A          231 MHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERI  284 (440)
T ss_dssp             TTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEE
T ss_pred             ccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEE
Confidence            88899988875 45555443 346889999999998 7888886543323455544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.08  E-value=8e-10  Score=86.95  Aligned_cols=148  Identities=15%  Similarity=0.199  Sum_probs=101.3

Q ss_pred             cCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccC
Q 046682            6 GLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLF   85 (236)
Q Consensus         6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~   85 (236)
                      .+.+|+.|+++......++.+    ...++|+.|++.+|.....  ..+..+++|++|++++|.+....        +..
T Consensus        42 ~l~~L~~L~l~~n~i~~l~~l----~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~--------~~~  107 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLTGI----EYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDK--------IPN  107 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCTTG----GGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGG--------SCC
T ss_pred             hcCCccEEeccCCCccChHHH----hcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCccc--------Chh
Confidence            456778888775433333322    2236899999999844333  56778899999999988544321        123


Q ss_pred             ccCCCCccEEEEecCCCCCc--chhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccc
Q 046682           86 QSGFRSLDRVVISSCKKMKD--LTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNL  163 (236)
Q Consensus        86 ~~~l~~L~~L~i~~c~~l~~--l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L  163 (236)
                      ...+++|+.|+++++ .+.+  ...+..+++|++|++++|..+..+.              .+..+++|++|+++++. +
T Consensus       108 l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--------------~l~~l~~L~~L~l~~n~-i  171 (197)
T 4ezg_A          108 LSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDIM--------------PLKTLPELKSLNIQFDG-V  171 (197)
T ss_dssp             CTTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--------------GGGGCSSCCEEECTTBC-C
T ss_pred             hcCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCccccH--------------hhcCCCCCCEEECCCCC-C
Confidence            456889999999887 5665  3456788999999999887565542              34578899999998764 4


Q ss_pred             cccCCCCCCCCCccEEeEeCC
Q 046682          164 KSVYPNPLPLPKLKKIQVRGC  184 (236)
Q Consensus       164 ~~i~~~~~~~p~L~~L~i~~C  184 (236)
                      ..+. ....+++|+.|++.+.
T Consensus       172 ~~~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          172 HDYR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CCCT-TGGGCSSCCEEEECBC
T ss_pred             cChH-HhccCCCCCEEEeeCc
Confidence            4444 3446788888888775

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.08  E-value=4e-10  Score=95.89  Aligned_cols=163  Identities=15%  Similarity=0.169  Sum_probs=104.6

Q ss_pred             cccCcCCcceeEEeeeh-HHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceee--------
Q 046682            4 LLGLKHLNVLSWSFGSS-LAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMK--------   74 (236)
Q Consensus         4 L~~L~~L~~L~i~~~~~-~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~--------   74 (236)
                      +..+++|+.|++..+.. ..+..+   . -.++|+.|.+.+|.-...  ..+..+++|+.|++++|.+..+.        
T Consensus       128 ~~~l~~L~~L~l~~n~~~~~~~~~---~-~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L  201 (347)
T 4fmz_A          128 LANLTKMYSLNLGANHNLSDLSPL---S-NMTGLNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQIEDISPLASLTSL  201 (347)
T ss_dssp             GTTCTTCCEEECTTCTTCCCCGGG---T-TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECTTSCCCCCGGGGGCTTC
T ss_pred             hccCCceeEEECCCCCCcccccch---h-hCCCCcEEEecCCCcCCc--hhhccCCCCCEEEccCCcccccccccCCCcc
Confidence            45667777777654311 111121   1 125788888887754333  33667778888888776333221        


Q ss_pred             ----ecccccccccCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccccccccccccccccccC
Q 046682           75 ----IDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFA  150 (236)
Q Consensus        75 ----~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p  150 (236)
                          +....-........+++|+.|++++| .+..++.+..+++|++|++++| .+..+              ..+..++
T Consensus       202 ~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~--------------~~~~~l~  265 (347)
T 4fmz_A          202 HYFTAYVNQITDITPVANMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGTN-QISDI--------------NAVKDLT  265 (347)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCC--------------GGGTTCT
T ss_pred             ceeecccCCCCCCchhhcCCcCCEEEccCC-ccCCCcchhcCCCCCEEECCCC-ccCCC--------------hhHhcCC
Confidence                11100001122556889999999998 6777777889999999999987 34433              2355789


Q ss_pred             cccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcC
Q 046682          151 QLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLP  191 (236)
Q Consensus       151 ~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp  191 (236)
                      +|++|+++++ .+..+. ....+++|+.|++++|+ +...+
T Consensus       266 ~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~-l~~~~  303 (347)
T 4fmz_A          266 KLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQ-LGNED  303 (347)
T ss_dssp             TCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCGGG
T ss_pred             CcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCc-CCCcC
Confidence            9999999987 455553 24568999999999994 44433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.07  E-value=7.4e-10  Score=97.96  Aligned_cols=189  Identities=17%  Similarity=0.152  Sum_probs=104.5

Q ss_pred             ccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeeccccccc
Q 046682            3 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVK   82 (236)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~   82 (236)
                      .+..+.+|+.|+++......+.  .....-.++|+.|+++++.-..+....+..+++|++|+++++.++.+...      
T Consensus        94 ~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------  165 (452)
T 3zyi_A           94 TFRHLHHLEVLQLGRNSIRQIE--VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY------  165 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTT------
T ss_pred             HcCCCCCCCEEECCCCccCCcC--hhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHh------
Confidence            4567888888887643221111  01111126788888888754433223366778888888888755544321      


Q ss_pred             ccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccccc----------cccccccccccccC
Q 046682           83 KLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKLR----------DISEIIGSEHNFFA  150 (236)
Q Consensus        83 ~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~----------~~~~~~~~~~~~~p  150 (236)
                        ....+++|+.|++.+|..+..++.  +..+++|++|+++++ ++..+.......          ...+.....+..++
T Consensus       166 --~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  242 (452)
T 3zyi_A          166 --AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLS  242 (452)
T ss_dssp             --TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCT
T ss_pred             --HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccccEEECcCCcCcccCcccccCcc
Confidence              123455666666666555554432  344555666655544 222221100000          00001013456788


Q ss_pred             cccEEeccccccccccCC-CCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          151 QLESLTIKWGRNLKSVYP-NPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       151 ~L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      +|+.|+++++. +..+.. ....+++|+.|+++++ +++.+|........+|+.+
T Consensus       243 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  295 (452)
T 3zyi_A          243 SLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVEL  295 (452)
T ss_dssp             TCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEE
T ss_pred             CCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEE
Confidence            99999998753 455543 3446899999999998 7888886543323455544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.06  E-value=2.8e-10  Score=95.25  Aligned_cols=139  Identities=19%  Similarity=0.305  Sum_probs=96.6

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhccc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQ  113 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp  113 (236)
                      +.|+.|.+.+|.-..+  +.+..+++|+.|++++|.+..+.          ....+++|+.|+++++ .++.++.+..++
T Consensus        46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~----------~l~~l~~L~~L~l~~n-~l~~~~~l~~l~  112 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK----------PLANLKNLGWLFLDEN-KVKDLSSLKDLK  112 (291)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG----------GGTTCTTCCEEECCSS-CCCCGGGGTTCT
T ss_pred             CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCc----------ccccCCCCCEEECCCC-cCCCChhhccCC
Confidence            6789999999854444  56788999999999999665442          2457899999999988 688888888999


Q ss_pred             CccEEeEecccccceecccccc--c--------cccccccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeC
Q 046682          114 ILKQLRIVFCTEMEEIISVDKL--R--------DISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRG  183 (236)
Q Consensus       114 ~L~~L~i~~C~~L~~i~~~~~~--~--------~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~  183 (236)
                      +|++|++++|. +..+......  .        .....  ..+..+++|+.|+++++ .++.+.. ...+++|+.|++++
T Consensus       113 ~L~~L~L~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~  187 (291)
T 1h6t_A          113 KLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSK  187 (291)
T ss_dssp             TCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCS
T ss_pred             CCCEEECCCCc-CCCChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCC
Confidence            99999998873 4443211000  0        00001  24556778888888765 3444433 45678899999888


Q ss_pred             CCCCCCcC
Q 046682          184 CPQLKKLP  191 (236)
Q Consensus       184 C~~L~~lp  191 (236)
                      + +++.+|
T Consensus       188 N-~i~~l~  194 (291)
T 1h6t_A          188 N-HISDLR  194 (291)
T ss_dssp             S-CCCBCG
T ss_pred             C-cCCCCh
Confidence            7 566554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.05  E-value=3.1e-10  Score=104.34  Aligned_cols=158  Identities=15%  Similarity=0.175  Sum_probs=80.2

Q ss_pred             cCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccC
Q 046682            6 GLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLF   85 (236)
Q Consensus         6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~   85 (236)
                      .|.+|+.|++.......++.+    ...++|+.|.|++|.-..+  ..+..+++|+.|.+++|.+..+          +.
T Consensus        41 ~L~~L~~L~l~~n~i~~l~~l----~~l~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~l----------~~  104 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQGI----QYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDL----------SS  104 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCTTG----GGCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC----------TT
T ss_pred             cCCCCCEEECcCCCCCCChHH----ccCCCCCEEEeeCCCCCCC--hhhccCCCCCEEECcCCCCCCC----------hh
Confidence            455566666543322222222    1225777777777743333  3366677777777777644332          12


Q ss_pred             ccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccc--cc--------cccccccccccccCcccEE
Q 046682           86 QSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDK--LR--------DISEIIGSEHNFFAQLESL  155 (236)
Q Consensus        86 ~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~--~~--------~~~~~~~~~~~~~p~L~~L  155 (236)
                      ...+++|+.|+++++ .+..++.+..+++|+.|+|++|. +..+.....  ..        .....  ..+..+++|+.|
T Consensus       105 l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L  180 (605)
T 1m9s_A          105 LKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNL  180 (605)
T ss_dssp             STTCTTCCEEECTTS-CCCCCGGGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred             hccCCCCCEEEecCC-CCCCCccccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCCc--hhhccCCCCCEE
Confidence            234555555555555 34444445555555555555442 222100000  00        00000  124567788888


Q ss_pred             eccccccccccCCCCCCCCCccEEeEeCCC
Q 046682          156 TIKWGRNLKSVYPNPLPLPKLKKIQVRGCP  185 (236)
Q Consensus       156 ~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~  185 (236)
                      .|+++ .+..++ ....+++|+.|.+.+|+
T Consensus       181 ~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          181 YLSKN-HISDLR-ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             ECCSS-CCCBCG-GGTTCTTCSEEECCSEE
T ss_pred             ECcCC-CCCCCh-HHccCCCCCEEEccCCc
Confidence            88765 344442 23457888888888773

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.04  E-value=6.4e-10  Score=93.70  Aligned_cols=149  Identities=16%  Similarity=0.148  Sum_probs=80.5

Q ss_pred             ccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceee--------
Q 046682            3 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMK--------   74 (236)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~--------   74 (236)
                      .+..+.+|+.|+++......+..+   .. .++|+.|+++++.-..+  +.+..+++|+.|.+++|.+..+.        
T Consensus        58 ~~~~l~~L~~L~L~~n~i~~~~~~---~~-l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L  131 (308)
T 1h6u_A           58 GVQYLNNLIGLELKDNQITDLAPL---KN-LTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNL  131 (308)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGGG---TT-CCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCGGGTTCTTC
T ss_pred             hhhccCCCCEEEccCCcCCCChhH---cc-CCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCchhhcCCCCC
Confidence            455667777777764433223222   11 25677777776643322  34555666666666655222221        


Q ss_pred             ----ecccccccccCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccccc----------cccc
Q 046682           75 ----IDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLR----------DISE  140 (236)
Q Consensus        75 ----~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~----------~~~~  140 (236)
                          +....-...+....+++|+.|+++++ .+.+++.+..+++|++|+++++. +..+.......          ....
T Consensus       132 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~  209 (308)
T 1h6u_A          132 QVLYLDLNQITNISPLAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNNQISD  209 (308)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTSCCCB
T ss_pred             CEEECCCCccCcCccccCCCCccEEEccCC-cCCCChhhcCCCCCCEEECCCCc-cCcChhhcCCCCCCEEEccCCccCc
Confidence                11110011122456778888888877 67777667778888888887653 33332110000          0001


Q ss_pred             cccccccccCcccEEeccccc
Q 046682          141 IIGSEHNFFAQLESLTIKWGR  161 (236)
Q Consensus       141 ~~~~~~~~~p~L~~L~l~~~~  161 (236)
                      .  ..+..+++|+.|++++.+
T Consensus       210 ~--~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          210 V--SPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             C--GGGTTCTTCCEEEEEEEE
T ss_pred             c--ccccCCCCCCEEEccCCe
Confidence            1  245678899999998765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.03  E-value=9.9e-10  Score=91.11  Aligned_cols=89  Identities=16%  Similarity=0.157  Sum_probs=52.4

Q ss_pred             CCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccc
Q 046682           88 GFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKS  165 (236)
Q Consensus        88 ~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~  165 (236)
                      .+++|+.|+++++ .+..++.  +..+++|++|+++++ .++.+..            ..+..+++|++|++++.. +..
T Consensus       127 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~------------~~~~~l~~L~~L~l~~n~-l~~  191 (285)
T 1ozn_A          127 GLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPE------------RAFRGLHSLDRLLLHQNR-VAH  191 (285)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECT------------TTTTTCTTCCEEECCSSC-CCE
T ss_pred             CCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccCH------------HHhcCccccCEEECCCCc-ccc
Confidence            4555666666554 3444332  345566666666554 2333221            235567888888888764 444


Q ss_pred             c-CCCCCCCCCccEEeEeCCCCCCCcCC
Q 046682          166 V-YPNPLPLPKLKKIQVRGCPQLKKLPV  192 (236)
Q Consensus       166 i-~~~~~~~p~L~~L~i~~C~~L~~lp~  192 (236)
                      + +.....+++|+.|+++++ +++.+|.
T Consensus       192 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~  218 (285)
T 1ozn_A          192 VHPHAFRDLGRLMTLYLFAN-NLSALPT  218 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSS-CCSCCCH
T ss_pred             cCHhHccCcccccEeeCCCC-cCCcCCH
Confidence            4 333456788999999887 6666663

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.01  E-value=5.2e-10  Score=102.83  Aligned_cols=139  Identities=19%  Similarity=0.308  Sum_probs=93.7

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhccc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQ  113 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp  113 (236)
                      ..|+.|.+.++.-..+  +.+..+++|+.|.+++|.+..+.          +...+++|+.|++++| .+..++.+..++
T Consensus        43 ~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~----------~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~  109 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK----------PLTNLKNLGWLFLDEN-KIKDLSSLKDLK  109 (605)
T ss_dssp             TTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCG----------GGGGCTTCCEEECCSS-CCCCCTTSTTCT
T ss_pred             CCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCCh----------hhccCCCCCEEECcCC-CCCCChhhccCC
Confidence            5788888888854444  56888999999999999665442          2456899999999998 688888888999


Q ss_pred             CccEEeEecccccceecccccc--c--------cccccccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeC
Q 046682          114 ILKQLRIVFCTEMEEIISVDKL--R--------DISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRG  183 (236)
Q Consensus       114 ~L~~L~i~~C~~L~~i~~~~~~--~--------~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~  183 (236)
                      +|+.|++++|. +..+......  .        .....  ..+..+++|+.|.|+++ .+..+.. ...+++|+.|.+++
T Consensus       110 ~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~  184 (605)
T 1m9s_A          110 KLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSK  184 (605)
T ss_dssp             TCCEEECTTSC-CCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCS
T ss_pred             CCCEEEecCCC-CCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcC
Confidence            99999998874 3333210000  0        00001  24556777788877765 3444332 44678888888888


Q ss_pred             CCCCCCcC
Q 046682          184 CPQLKKLP  191 (236)
Q Consensus       184 C~~L~~lp  191 (236)
                      | ++..+|
T Consensus       185 N-~i~~l~  191 (605)
T 1m9s_A          185 N-HISDLR  191 (605)
T ss_dssp             S-CCCBCG
T ss_pred             C-CCCCCh
Confidence            7 444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.00  E-value=1.9e-09  Score=94.95  Aligned_cols=182  Identities=14%  Similarity=0.109  Sum_probs=109.8

Q ss_pred             cCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCcc
Q 046682            8 KHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQS   87 (236)
Q Consensus         8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~   87 (236)
                      .+++.|+++......+..  ....-.++|+.|+++++.-..+....+..+++|+.|+++++.+..+..+        ...
T Consensus        64 ~~l~~L~L~~n~i~~~~~--~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~  133 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKV--NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG--------AFV  133 (440)
T ss_dssp             TTCSEEECCSCCCCEECT--TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTT--------TSC
T ss_pred             CCCcEEEccCCcCCeeCH--HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHh--------Hhh
Confidence            456777766432221110  1111237899999999864444334578899999999999966655321        235


Q ss_pred             CCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccc----ccc--------ccccccccccccCccc
Q 046682           88 GFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDK----LRD--------ISEIIGSEHNFFAQLE  153 (236)
Q Consensus        88 ~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~----~~~--------~~~~~~~~~~~~p~L~  153 (236)
                      .+++|+.|+++++ .+..++.  +..+++|++|++.+|..+..+....-    ...        ....  ..+..+++|+
T Consensus       134 ~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  210 (440)
T 3zyj_A          134 YLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLD  210 (440)
T ss_dssp             SCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--CCCTTCSSCC
T ss_pred             ccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--cccCCCcccC
Confidence            6899999999987 5776643  56899999999999888877653110    000        0001  2344556677


Q ss_pred             EEeccccccccccCC-CCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          154 SLTIKWGRNLKSVYP-NPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       154 ~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      .|+++++ .++.+.. ....+++|+.|.+.++ +++.++.......++|+.+
T Consensus       211 ~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  260 (440)
T 3zyj_A          211 ELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEI  260 (440)
T ss_dssp             EEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEE
T ss_pred             EEECCCC-ccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEE
Confidence            7777665 4444433 2345677777777776 4555543322222444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.99  E-value=1.8e-09  Score=89.00  Aligned_cols=170  Identities=16%  Similarity=0.166  Sum_probs=107.0

Q ss_pred             cCCcceeEEeeehHHHHHHhc-CCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCc
Q 046682            8 KHLNVLSWSFGSSLAVQKFLK-YPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQ   86 (236)
Q Consensus         8 ~~L~~L~i~~~~~~~l~~l~~-~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~   86 (236)
                      .+|+.|+++.....   .+.. ...-.++|+.|++.++.-..+....+..+++|++|+++++.+..+...        ..
T Consensus        37 ~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~  105 (270)
T 2o6q_A           37 ADTKKLDLQSNKLS---SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG--------VF  105 (270)
T ss_dssp             TTCSEEECCSSCCS---CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT--------TT
T ss_pred             CCCCEEECcCCCCC---eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHh--------Hc
Confidence            35777776643322   2211 111236899999988854444323357789999999998866554321        22


Q ss_pred             cCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEecccccccc
Q 046682           87 SGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLK  164 (236)
Q Consensus        87 ~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~  164 (236)
                      ..+++|+.|+++++ .+..++.  +..+++|++|+++++ .++.+..            ..+..+++|++|+++++ .++
T Consensus       106 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~------------~~~~~l~~L~~L~L~~n-~l~  170 (270)
T 2o6q_A          106 DQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPK------------GVFDKLTSLKELRLYNN-QLK  170 (270)
T ss_dssp             TTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCS
T ss_pred             ccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCC-cCCccCH------------hHccCCcccceeEecCC-cCc
Confidence            45788999999887 5666543  467889999999876 3443331            13456788888888765 455


Q ss_pred             ccCCC-CCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          165 SVYPN-PLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       165 ~i~~~-~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      .++.. ...+++|+.|+++++ +++.+|.......++|+.+
T Consensus       171 ~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  210 (270)
T 2o6q_A          171 RVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKML  210 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred             EeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEE
Confidence            55543 335788888888887 6777776533222445444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.99  E-value=2.6e-09  Score=86.38  Aligned_cols=173  Identities=11%  Similarity=0.051  Sum_probs=117.3

Q ss_pred             ccccCcCCcceeEEeee-hHHHHHHhcCCcccccceEEEEeccCC-CCccccchhhcccCCceeecCCccceeeeccccc
Q 046682            3 ELLGLKHLNVLSWSFGS-SLAVQKFLKYPKLVSITQFVLVYHCKS-APFNLLHLAYMENLQELDLEDINLEEMKIDSTEE   80 (236)
Q Consensus         3 eL~~L~~L~~L~i~~~~-~~~l~~l~~~~~l~~~L~~L~l~~c~~-~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~   80 (236)
                      .+..+++|+.|++.... ...+..-  ...-.++|+.|++.+|.. ..+....+..+++|+.|++++|.++.++      
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~~~--~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp------  121 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLESH--SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP------  121 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEECTT--TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCC------
T ss_pred             HccCCCCCcEEeCCCCCCcceeCHh--HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccc------
Confidence            35678889999887543 2222110  111236899999998644 3332234678899999999998655442      


Q ss_pred             ccccCccCCCCcc---EEEEecCCCCCcchh--hhcccCcc-EEeEecccccceeccccccccccccccccccccCcccE
Q 046682           81 VKKLFQSGFRSLD---RVVISSCKKMKDLTW--LVFVQILK-QLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLES  154 (236)
Q Consensus        81 ~~~~~~~~l~~L~---~L~i~~c~~l~~l~~--l~~lp~L~-~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~  154 (236)
                          ....+++|+   .|++++++.++.++.  +..+++|+ +|+++++ .++.+..            ..... ++|+.
T Consensus       122 ----~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~------------~~~~~-~~L~~  183 (239)
T 2xwt_C          122 ----DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQG------------YAFNG-TKLDA  183 (239)
T ss_dssp             ----CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECT------------TTTTT-CEEEE
T ss_pred             ----ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCH------------hhcCC-CCCCE
Confidence                123466666   999999877887753  56789999 9999876 4555432            11223 78999


Q ss_pred             EeccccccccccCCCC-CCC-CCccEEeEeCCCCCCCcCCCCCCCCCcceEEe
Q 046682          155 LTIKWGRNLKSVYPNP-LPL-PKLKKIQVRGCPQLKKLPVNSSSVKERRVVIE  205 (236)
Q Consensus       155 L~l~~~~~L~~i~~~~-~~~-p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  205 (236)
                      |++.+++.++.++... ..+ ++|+.|+++++ +++.+|...   .++++.+.
T Consensus       184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~---~~~L~~L~  232 (239)
T 2xwt_C          184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKG---LEHLKELI  232 (239)
T ss_dssp             EECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTT---CTTCSEEE
T ss_pred             EEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhH---hccCceee
Confidence            9999988888887653 356 89999999995 788888762   24555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.99  E-value=3e-09  Score=88.86  Aligned_cols=182  Identities=14%  Similarity=0.125  Sum_probs=103.2

Q ss_pred             ccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeeccccccc
Q 046682            3 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVK   82 (236)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~   82 (236)
                      +++++.+|+.++++..   .+..+..  .+++.++.|+++++.-..+....+..+++|+.|.++++.+..+...      
T Consensus         5 ~~~~l~~l~~l~~~~~---~l~~ip~--~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------   73 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKR---NLTALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD------   73 (290)
T ss_dssp             EEECSTTCCEEECTTS---CCSSCCS--CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC------
T ss_pred             cccccCCccEEECCCC---CCCcCCC--CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC------
Confidence            4566777777776532   2333322  2347899999998865444334577889999999998866555321      


Q ss_pred             ccCccCCCCccEEEEecCCCCCcchh-hhcccCccEEeEecccccceecccc-cc---cc--------cccccccccccc
Q 046682           83 KLFQSGFRSLDRVVISSCKKMKDLTW-LVFVQILKQLRIVFCTEMEEIISVD-KL---RD--------ISEIIGSEHNFF  149 (236)
Q Consensus        83 ~~~~~~l~~L~~L~i~~c~~l~~l~~-l~~lp~L~~L~i~~C~~L~~i~~~~-~~---~~--------~~~~~~~~~~~~  149 (236)
                          ..+++|+.|+++++ .+..++. +..+++|++|+++++ .++.+.... ..   ..        ........+..+
T Consensus        74 ----~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  147 (290)
T 1p9a_G           74 ----GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT  147 (290)
T ss_dssp             ----SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             ----CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccc
Confidence                23455555555544 3444332 234455555555443 222221100 00   00        000000234567


Q ss_pred             CcccEEeccccccccccCCCC-CCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          150 AQLESLTIKWGRNLKSVYPNP-LPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       150 p~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      ++|+.|++++. +++.++.+. ..+++|+.|.++++ +++.+|.+.... ..|+.+
T Consensus       148 ~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~-~~L~~l  200 (290)
T 1p9a_G          148 PKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGS-HLLPFA  200 (290)
T ss_dssp             TTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT-CCCSEE
T ss_pred             cCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCccChhhccc-ccCCeE
Confidence            88999999865 466776654 35889999999887 678888765443 344433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.98  E-value=1.8e-09  Score=93.55  Aligned_cols=108  Identities=13%  Similarity=0.178  Sum_probs=58.2

Q ss_pred             CCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccc-cc---cc--------ccccccccccccCcccEEe
Q 046682           89 FRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVD-KL---RD--------ISEIIGSEHNFFAQLESLT  156 (236)
Q Consensus        89 l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~-~~---~~--------~~~~~~~~~~~~p~L~~L~  156 (236)
                      +++|+.|++.++ .+...+++..+++|++|+++++. +..+.... ..   ..        ..... .....+|+|++|+
T Consensus       225 ~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~  301 (390)
T 3o6n_A          225 NVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLD  301 (390)
T ss_dssp             CSSCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCCCEEE-CSSSCCTTCCEEE
T ss_pred             cccccEEECCCC-CCcccHHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCcCcccC-cccCCCCCCCEEE
Confidence            345666666665 45566667778888888887763 33332110 00   00        00000 1234566777777


Q ss_pred             ccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          157 IKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       157 l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      ++++ .+..++.....+++|+.|++.+++ +..+|....   ++|+.+
T Consensus       302 L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~---~~L~~L  344 (390)
T 3o6n_A          302 LSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTH---HTLKNL  344 (390)
T ss_dssp             CCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTT---CCCSEE
T ss_pred             CCCC-cceecCccccccCcCCEEECCCCc-cceeCchhh---ccCCEE
Confidence            7665 445554434456777777777763 566664332   445544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.97  E-value=2.5e-09  Score=94.96  Aligned_cols=172  Identities=19%  Similarity=0.211  Sum_probs=86.6

Q ss_pred             ccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeeccccc--
Q 046682            3 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEE--   80 (236)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~--   80 (236)
                      .+..+.+|++|+++......+.  .....-.++|+.|++.++.-..+....+..+++|++|+++++.+..+.......  
T Consensus        51 ~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  128 (477)
T 2id5_A           51 EFASFPHLEELELNENIVSAVE--PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY  128 (477)
T ss_dssp             TTTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             HccCCCCCCEEECCCCccCEeC--hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence            4566778888887632211110  011111257888888877543332233567788888888776443331111000  


Q ss_pred             ------------c--cccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccccccccccccc
Q 046682           81 ------------V--KKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGS  144 (236)
Q Consensus        81 ------------~--~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~  144 (236)
                                  .  .+.....+++|+.|++.++ ++..++.  +..+++|+.|++.++. +..+..            .
T Consensus       129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~------------~  194 (477)
T 2id5_A          129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLN-INAIRD------------Y  194 (477)
T ss_dssp             TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCC-CCEECT------------T
T ss_pred             cCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCc-CcEeCh------------h
Confidence                        0  0112234455555555555 3444331  3455555555555442 222211            2


Q ss_pred             cccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcC
Q 046682          145 EHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLP  191 (236)
Q Consensus       145 ~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp  191 (236)
                      .+..+++|+.|++++++.+..++......++|+.|++.+| +++.+|
T Consensus       195 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~  240 (477)
T 2id5_A          195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVP  240 (477)
T ss_dssp             CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCC
T ss_pred             hcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccC
Confidence            3456677777777777666666554444445666665555 344443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.97  E-value=3.9e-09  Score=80.67  Aligned_cols=136  Identities=17%  Similarity=0.161  Sum_probs=98.4

Q ss_pred             ccccceEEEEeccCCC--CccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCc-chh
Q 046682           32 LVSITQFVLVYHCKSA--PFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKD-LTW  108 (236)
Q Consensus        32 l~~~L~~L~l~~c~~~--~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~-l~~  108 (236)
                      .++.++.|++.+|.-.  .++ ..+..+++|+.|++++|.+..+  .        ....+++|+.|+++++ .+.. ++.
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n~l~~~--~--------~~~~l~~L~~L~Ls~N-~l~~~~~~   89 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISV--S--------NLPKLPKLKKLELSEN-RIFGGLDM   89 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESSCCCCC--S--------SCCCCSSCCEEEEESC-CCCSCCCH
T ss_pred             CcccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCCCCCCh--h--------hhccCCCCCEEECcCC-cCchHHHH
Confidence            3478999999999643  331 2358899999999999966544  1        2356899999999998 5666 544


Q ss_pred             h-hcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCC----CCCCCCCccEEeEeC
Q 046682          109 L-VFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP----NPLPLPKLKKIQVRG  183 (236)
Q Consensus       109 l-~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~----~~~~~p~L~~L~i~~  183 (236)
                      . ..+++|++|+++++ .++.+...           ..+..+++|+.|++++++ +..++.    ....+|+|+.|++.+
T Consensus        90 ~~~~l~~L~~L~Ls~N-~l~~~~~~-----------~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A           90 LAEKLPNLTHLNLSGN-KLKDISTL-----------EPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             HHHHCTTCCEEECBSS-SCCSSGGG-----------GGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             HHhhCCCCCEEeccCC-ccCcchhH-----------HHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCC
Confidence            3 45999999999988 45443210           245578999999998863 455543    244689999999999


Q ss_pred             CCCCCCcCCC
Q 046682          184 CPQLKKLPVN  193 (236)
Q Consensus       184 C~~L~~lp~~  193 (236)
                      | .+..+|..
T Consensus       157 n-~~~~~~~~  165 (168)
T 2ell_A          157 R-EDQEAPDS  165 (168)
T ss_dssp             T-TSCBCCSS
T ss_pred             C-Chhhcccc
Confidence            9 45666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.96  E-value=1.8e-10  Score=97.59  Aligned_cols=110  Identities=17%  Similarity=0.134  Sum_probs=63.9

Q ss_pred             ccCcCCcceeEEeeeh--HHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCC-ccceeeecccccc
Q 046682            5 LGLKHLNVLSWSFGSS--LAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTEEV   81 (236)
Q Consensus         5 ~~L~~L~~L~i~~~~~--~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~   81 (236)
                      ..+.+|+.|+++.+..  ..+...+...   ++|+.|++.+|.-.......+..+++|++|++++| .+....+.     
T Consensus        90 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~---~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~-----  161 (336)
T 2ast_B           90 FSPFRVQHMDLSNSVIEVSTLHGILSQC---SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ-----  161 (336)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTB---CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH-----
T ss_pred             ccCCCCCEEEccCCCcCHHHHHHHHhhC---CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHH-----
Confidence            3457777777654332  2244444332   57888888887432111133566788888888888 66531110     


Q ss_pred             cccCccCCCCccEEEEecCCCCCcc--h-hhhccc-CccEEeEeccc
Q 046682           82 KKLFQSGFRSLDRVVISSCKKMKDL--T-WLVFVQ-ILKQLRIVFCT  124 (236)
Q Consensus        82 ~~~~~~~l~~L~~L~i~~c~~l~~l--~-~l~~lp-~L~~L~i~~C~  124 (236)
                        .....+++|+.|++++|..+.+.  + .+..+| +|++|++++|.
T Consensus       162 --~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          162 --TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             --HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             --HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence              11234677777777777666642  2 245677 77777777774

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.96  E-value=5.5e-09  Score=92.72  Aligned_cols=38  Identities=11%  Similarity=0.073  Sum_probs=19.6

Q ss_pred             ccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCC
Q 046682          146 HNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCP  185 (236)
Q Consensus       146 ~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~  185 (236)
                      +..+++|++|+++++ .+..+. ....+++|+.|++++|+
T Consensus       327 ~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          327 VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred             hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc
Confidence            345566666666654 333331 22345566666666653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.96  E-value=1.2e-08  Score=83.19  Aligned_cols=149  Identities=14%  Similarity=0.139  Sum_probs=101.3

Q ss_pred             ccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch--hh
Q 046682           32 LVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT--WL  109 (236)
Q Consensus        32 l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--~l  109 (236)
                      ++..++.|.+.++.-..+....+..+++|++|+++++.+..+..        .....+++|+.|+++++ ++..++  .+
T Consensus        33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n-~l~~~~~~~~  103 (251)
T 3m19_A           33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA--------GVFDDLTELGTLGLANN-QLASLPLGVF  103 (251)
T ss_dssp             CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT--------TTTTTCTTCCEEECTTS-CCCCCCTTTT
T ss_pred             CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH--------hHhccCCcCCEEECCCC-cccccChhHh
Confidence            34689999999886544433457888999999999986655421        12356789999999887 576664  34


Q ss_pred             hcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCCCCCC
Q 046682          110 VFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGCPQLK  188 (236)
Q Consensus       110 ~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~  188 (236)
                      ..+++|++|+++++ .++.+..            ..+..+++|++|++++. +++.++.. ...+++|+.|+++++ +++
T Consensus       104 ~~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~  168 (251)
T 3m19_A          104 DHLTQLDKLYLGGN-QLKSLPS------------GVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQ  168 (251)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCS
T ss_pred             cccCCCCEEEcCCC-cCCCcCh------------hHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCC
Confidence            67889999999876 4544431            13456788899988875 56666653 346788899988887 666


Q ss_pred             CcCCCCCCCCCcceEE
Q 046682          189 KLPVNSSSVKERRVVI  204 (236)
Q Consensus       189 ~lp~~~~~~~~~l~~~  204 (236)
                      .+|........+|+.+
T Consensus       169 ~~~~~~~~~l~~L~~L  184 (251)
T 3m19_A          169 SVPHGAFDRLGKLQTI  184 (251)
T ss_dssp             CCCTTTTTTCTTCCEE
T ss_pred             ccCHHHHhCCCCCCEE
Confidence            7765332222445444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.96  E-value=1.9e-09  Score=95.28  Aligned_cols=169  Identities=14%  Similarity=0.086  Sum_probs=103.9

Q ss_pred             cCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCcc
Q 046682            8 KHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQS   87 (236)
Q Consensus         8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~   87 (236)
                      .+|+.|+++......+.  .....-.++|+.|+++++.-..+....+..+++|+.|+++++.+..+..+        ...
T Consensus        75 ~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~  144 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQ--ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSG--------AFE  144 (452)
T ss_dssp             TTCSEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTT--------TSS
T ss_pred             CCccEEECcCCcCceEC--HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChh--------hhc
Confidence            46777777643222110  01111237899999999854444334578899999999999966655321        235


Q ss_pred             CCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccc----ccc--------ccccccccccccCccc
Q 046682           88 GFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDK----LRD--------ISEIIGSEHNFFAQLE  153 (236)
Q Consensus        88 ~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~----~~~--------~~~~~~~~~~~~p~L~  153 (236)
                      .+++|+.|+++++ .+..++.  +..+++|++|++++|..+..+....-    ...        ....  ..+..+++|+
T Consensus       145 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  221 (452)
T 3zyi_A          145 YLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLE  221 (452)
T ss_dssp             SCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCC
T ss_pred             ccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--cccccccccc
Confidence            6899999999988 5776653  56899999999999988887753210    000        0000  2344556666


Q ss_pred             EEeccccccccccCC-CCCCCCCccEEeEeCCCCCCCcC
Q 046682          154 SLTIKWGRNLKSVYP-NPLPLPKLKKIQVRGCPQLKKLP  191 (236)
Q Consensus       154 ~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp  191 (236)
                      .|++++.. +..+.. ....+++|+.|.+.++ ++..++
T Consensus       222 ~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~  258 (452)
T 3zyi_A          222 ELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNS-QVSLIE  258 (452)
T ss_dssp             EEECTTSC-CSEECGGGGTTCTTCCEEECTTS-CCCEEC
T ss_pred             EEECcCCc-CcccCcccccCccCCCEEEeCCC-cCceEC
Confidence            66666542 333322 2345677777777776 344443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.95  E-value=9.6e-09  Score=91.15  Aligned_cols=176  Identities=16%  Similarity=0.145  Sum_probs=95.5

Q ss_pred             cccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccc
Q 046682            4 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKK   83 (236)
Q Consensus         4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~   83 (236)
                      +..+.+|+.|++.......+.  .....-.++|+.|++.++.-..+....+..+++|+.|.++++.+..+...       
T Consensus       124 ~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~-------  194 (477)
T 2id5_A          124 FQDLYNLKSLEVGDNDLVYIS--HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY-------  194 (477)
T ss_dssp             TTTCTTCCEEEECCTTCCEEC--TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT-------
T ss_pred             ccccccCCEEECCCCccceeC--hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh-------
Confidence            556778888887632211110  00111125788888888754433223356777888888877644433211       


Q ss_pred             cCccCCCCccEEEEecCCC-----------------------CCcch--hhhcccCccEEeEecccccceeccccccccc
Q 046682           84 LFQSGFRSLDRVVISSCKK-----------------------MKDLT--WLVFVQILKQLRIVFCTEMEEIISVDKLRDI  138 (236)
Q Consensus        84 ~~~~~l~~L~~L~i~~c~~-----------------------l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~  138 (236)
                       ....+++|+.|++.+|..                       ++.++  .+..+++|++|+++++. +..+..       
T Consensus       195 -~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-------  265 (477)
T 2id5_A          195 -SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG-------  265 (477)
T ss_dssp             -CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECT-------
T ss_pred             -hcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccCh-------
Confidence             122344455555544443                       43333  13345555555555442 222221       


Q ss_pred             cccccccccccCcccEEeccccccccccCC-CCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          139 SEIIGSEHNFFAQLESLTIKWGRNLKSVYP-NPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       139 ~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                           ..+..+++|+.|.+.++ ++..+.. ....+++|+.|+++++ +++.+|.......++|+.+
T Consensus       266 -----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  325 (477)
T 2id5_A          266 -----SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETL  325 (477)
T ss_dssp             -----TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEE
T ss_pred             -----hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEE
Confidence                 24557788999998875 3455533 3446889999999988 7777776432222444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.94  E-value=1.6e-08  Score=83.24  Aligned_cols=128  Identities=19%  Similarity=0.206  Sum_probs=60.2

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVF  111 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~  111 (236)
                      ++|+.|.+.++.-..+....+..+++|++|.++++.+..+..        .....+++|+.|+++++ .+..++.  +..
T Consensus        85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~  155 (270)
T 2o6q_A           85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP--------RVFDSLTKLTYLSLGYN-ELQSLPKGVFDK  155 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT--------TTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred             CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH--------HHhCcCcCCCEEECCCC-cCCccCHhHccC
Confidence            455666665553322221234455566666666554333311        11234556666666555 3444432  345


Q ss_pred             ccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCC
Q 046682          112 VQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGC  184 (236)
Q Consensus       112 lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C  184 (236)
                      +++|++|+++++ .++.+..            ..+..+++|++|+++++ .++.++.. ...+++|+.|.+.+.
T Consensus       156 l~~L~~L~L~~n-~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          156 LTSLKELRLYNN-QLKRVPE------------GAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CTTCCEEECCSS-CCSCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcccceeEecCC-cCcEeCh------------hHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCC
Confidence            556666666554 2222211            12334556666666554 34444432 223555666655554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.94  E-value=2e-09  Score=88.77  Aligned_cols=146  Identities=16%  Similarity=0.206  Sum_probs=89.1

Q ss_pred             ccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeeccccccccc
Q 046682            5 LGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKL   84 (236)
Q Consensus         5 ~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~   84 (236)
                      ..+.+|+.|+++......++.+.    -.++|+.|+++++.-..+  +.+..+++|+.|++++|.+..+.          
T Consensus        38 ~~l~~L~~L~l~~n~i~~l~~l~----~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~L~~N~l~~l~----------  101 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQSLAGMQ----FFTNLKELHLSHNQISDL--SPLKDLTKLEELSVNRNRLKNLN----------  101 (263)
T ss_dssp             HHHTTCSEEECTTSCCCCCTTGG----GCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSSCCSCCT----------
T ss_pred             hhcCcCcEEECcCCCcccchHHh----hCCCCCEEECCCCccCCC--hhhccCCCCCEEECCCCccCCcC----------
Confidence            34455666655433222222111    125677777776643333  22666777777777777544331          


Q ss_pred             CccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEecccccccc
Q 046682           85 FQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLK  164 (236)
Q Consensus        85 ~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~  164 (236)
                      .... ++|+.|+++++ +++.++.+..+++|++|+++++. ++.+              ..+..+++|+.|+++++ .+.
T Consensus       102 ~~~~-~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N~-i~~~--------------~~l~~l~~L~~L~L~~N-~i~  163 (263)
T 1xeu_A          102 GIPS-ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNNK-LKSI--------------VMLGFLSKLEVLDLHGN-EIT  163 (263)
T ss_dssp             TCCC-SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTSC-CCBC--------------GGGGGCTTCCEEECTTS-CCC
T ss_pred             cccc-CcccEEEccCC-ccCCChhhcCcccccEEECCCCc-CCCC--------------hHHccCCCCCEEECCCC-cCc
Confidence            1122 77888888877 67777667778888888887653 4332              13457889999999875 344


Q ss_pred             ccCCCCCCCCCccEEeEeCCC
Q 046682          165 SVYPNPLPLPKLKKIQVRGCP  185 (236)
Q Consensus       165 ~i~~~~~~~p~L~~L~i~~C~  185 (236)
                      .+ .....+++|+.|++++++
T Consensus       164 ~~-~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          164 NT-GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             BC-TTSTTCCCCCEEEEEEEE
T ss_pred             ch-HHhccCCCCCEEeCCCCc
Confidence            44 334568899999998874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.92  E-value=3.6e-09  Score=93.86  Aligned_cols=166  Identities=16%  Similarity=0.236  Sum_probs=88.4

Q ss_pred             cccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccc
Q 046682            4 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKK   83 (236)
Q Consensus         4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~   83 (236)
                      +..+.+|+.|++.......+..+..    .++|+.|++.+|.-...  ..+..+++|+.|.+++|.+..+.         
T Consensus       217 ~~~l~~L~~L~l~~n~l~~~~~l~~----l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~---------  281 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNIS---------  281 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGGG----CTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG---------
T ss_pred             ccccCCCCEEECCCCCcccchhhhc----CCCCCEEECCCCccccc--hhhhcCCCCCEEECCCCccCccc---------
Confidence            4456777777776443322222221    25778888887754333  33666777777777776333221         


Q ss_pred             cCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccccc----------cccccccccccccCccc
Q 046682           84 LFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLR----------DISEIIGSEHNFFAQLE  153 (236)
Q Consensus        84 ~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~----------~~~~~~~~~~~~~p~L~  153 (236)
                       ....+++|+.|++++| ++..++.+..+++|++|++++|. +..+.......          ...+.  ..+..+++|+
T Consensus       282 -~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~  356 (466)
T 1o6v_A          282 -PLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNIN  356 (466)
T ss_dssp             -GGTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCC
T ss_pred             -cccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCc-CCCchhhccCccCCEeECCCCccCCc--hhhccCCCCC
Confidence             1223444555555444 34444334444445555444442 22211100000          00000  2456789999


Q ss_pred             EEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCC
Q 046682          154 SLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPV  192 (236)
Q Consensus       154 ~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~  192 (236)
                      .|+++++. +..+.. ...+++|+.|.+.+|+ +..+|.
T Consensus       357 ~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-~~~~p~  392 (466)
T 1o6v_A          357 WLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA-WTNAPV  392 (466)
T ss_dssp             EEECCSSC-CCBCGG-GTTCTTCCEEECCCEE-EECCCB
T ss_pred             EEeCCCCc-cCccch-hhcCCCCCEEeccCCc-ccCCch
Confidence            99999875 444433 5678999999999983 444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.88  E-value=3.7e-09  Score=89.20  Aligned_cols=101  Identities=10%  Similarity=0.082  Sum_probs=46.3

Q ss_pred             cccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccc
Q 046682            4 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKK   83 (236)
Q Consensus         4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~   83 (236)
                      +..+.+|++|+++.....   .+.    ..+.|+.|.+.++.-..+.   ...+++|+.|+++++.+..+..        
T Consensus        76 ~~~l~~L~~L~Ls~n~l~---~l~----~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~N~l~~~~~--------  137 (317)
T 3o53_A           76 LESLSTLRTLDLNNNYVQ---ELL----VGPSIETLHAANNNISRVS---CSRGQGKKNIYLANNKITMLRD--------  137 (317)
T ss_dssp             ETTCTTCCEEECCSSEEE---EEE----ECTTCCEEECCSSCCSEEE---ECCCSSCEEEECCSSCCCSGGG--------
T ss_pred             hhhcCCCCEEECcCCccc---ccc----CCCCcCEEECCCCccCCcC---ccccCCCCEEECCCCCCCCccc--------
Confidence            456677777776643211   111    1146666666665322211   1234556666666653332211        


Q ss_pred             cCccCCCCccEEEEecCCCCCcch--hh-hcccCccEEeEecc
Q 046682           84 LFQSGFRSLDRVVISSCKKMKDLT--WL-VFVQILKQLRIVFC  123 (236)
Q Consensus        84 ~~~~~l~~L~~L~i~~c~~l~~l~--~l-~~lp~L~~L~i~~C  123 (236)
                      .....+++|+.|+++++ .+..+.  .+ ..+++|++|+++++
T Consensus       138 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          138 LDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             BCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             hhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCC
Confidence            01223455555555554 343321  11 23455555555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.86  E-value=9e-09  Score=89.07  Aligned_cols=35  Identities=14%  Similarity=-0.086  Sum_probs=15.2

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCC
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI   68 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c   68 (236)
                      ++|+.|++.++.-..+....+..+++|++|++++|
T Consensus        93 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  127 (390)
T 3o6n_A           93 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN  127 (390)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC
Confidence            34455555444322221122344555555555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.85  E-value=5.5e-09  Score=87.39  Aligned_cols=155  Identities=15%  Similarity=0.158  Sum_probs=99.2

Q ss_pred             cCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccc-cchhhcccCCceeecCCccceeeeccccccccc
Q 046682            6 GLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNL-LHLAYMENLQELDLEDINLEEMKIDSTEEVKKL   84 (236)
Q Consensus         6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~-~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~   84 (236)
                      .+.+|++|+++......+   .....-.++|+.|++.++.-..... ..+..+++|+.|.+++|.+..+..        .
T Consensus        76 ~~~~L~~L~Ls~n~i~~l---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~  144 (306)
T 2z66_A           76 GTTSLKYLDLSFNGVITM---SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--------G  144 (306)
T ss_dssp             SCSCCCEEECCSCSEEEE---EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST--------T
T ss_pred             cccccCEEECCCCccccC---hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch--------h
Confidence            467888888764322211   1111113689999998875433321 346788999999999885443321        1


Q ss_pred             CccCCCCccEEEEecCCCCCc--c-hhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682           85 FQSGFRSLDRVVISSCKKMKD--L-TWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR  161 (236)
Q Consensus        85 ~~~~l~~L~~L~i~~c~~l~~--l-~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  161 (236)
                      ....+++|+.|+++++ .+..  + ..+..+++|++|+++++ .++.+..            ..+..+++|++|+++++.
T Consensus       145 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~------------~~~~~l~~L~~L~L~~N~  210 (306)
T 2z66_A          145 IFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP------------TAFNSLSSLQVLNMSHNN  210 (306)
T ss_dssp             TTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECT------------TTTTTCTTCCEEECTTSC
T ss_pred             hcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCC-CcCCcCH------------HHhcCCCCCCEEECCCCc
Confidence            2345788999999887 3443  2 23567889999999887 3444421            245577889999998754


Q ss_pred             cccccCC-CCCCCCCccEEeEeCCCC
Q 046682          162 NLKSVYP-NPLPLPKLKKIQVRGCPQ  186 (236)
Q Consensus       162 ~L~~i~~-~~~~~p~L~~L~i~~C~~  186 (236)
                       +..+.. ....+++|+.|+++++.-
T Consensus       211 -l~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          211 -FFSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             -CSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             -cCccChhhccCcccCCEeECCCCCC
Confidence             444443 234578899999998843

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.85  E-value=4.3e-08  Score=86.21  Aligned_cols=58  Identities=22%  Similarity=0.294  Sum_probs=40.6

Q ss_pred             cccccCcccEEeccccccccccC-CCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          145 EHNFFAQLESLTIKWGRNLKSVY-PNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       145 ~~~~~p~L~~L~l~~~~~L~~i~-~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      .+..+++|++|+++++ .+..+. .....+++|++|+++++ +++.+|.......++|+.+
T Consensus       342 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  400 (455)
T 3v47_A          342 MFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKI  400 (455)
T ss_dssp             GGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred             HhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEE
Confidence            4567889999999876 345553 34557899999999997 7888887543323555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.84  E-value=4e-08  Score=81.31  Aligned_cols=160  Identities=13%  Similarity=0.122  Sum_probs=77.9

Q ss_pred             cccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch--hhh
Q 046682           33 VSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT--WLV  110 (236)
Q Consensus        33 ~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--~l~  110 (236)
                      ++.++.|++.++.-..+....+..+++|++|.++++.+..+..        .....+++|+.|+++++..+..+.  .+.
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~~l~~~~~~~~~  102 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA--------AAFTGLALLEQLDLSDNAQLRSVDPATFH  102 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT--------TTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH--------hhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence            3566666666664333322235566666666666664443311        112334555555555553344431  233


Q ss_pred             cccCccEEeEecccccceecccc----cccc--------ccccccccccccCcccEEeccccccccccCCC-CCCCCCcc
Q 046682          111 FVQILKQLRIVFCTEMEEIISVD----KLRD--------ISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLK  177 (236)
Q Consensus       111 ~lp~L~~L~i~~C~~L~~i~~~~----~~~~--------~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~  177 (236)
                      .+++|++|+++++. +..+....    ....        ........+..+++|++|+++++ +++.++.. ...+++|+
T Consensus       103 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~  180 (285)
T 1ozn_A          103 GLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLD  180 (285)
T ss_dssp             TCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred             CCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccC
Confidence            45555555555442 22211100    0000        00000023456788888888765 46666553 34578888


Q ss_pred             EEeEeCCCCCCCc-CCCCCCCCCcceEE
Q 046682          178 KIQVRGCPQLKKL-PVNSSSVKERRVVI  204 (236)
Q Consensus       178 ~L~i~~C~~L~~l-p~~~~~~~~~l~~~  204 (236)
                      .|.+.++. +..+ |..... .++|+.+
T Consensus       181 ~L~l~~n~-l~~~~~~~~~~-l~~L~~L  206 (285)
T 1ozn_A          181 RLLLHQNR-VAHVHPHAFRD-LGRLMTL  206 (285)
T ss_dssp             EEECCSSC-CCEECTTTTTT-CTTCCEE
T ss_pred             EEECCCCc-ccccCHhHccC-cccccEe
Confidence            88888874 5544 333222 2455544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.84  E-value=9.8e-09  Score=86.83  Aligned_cols=47  Identities=11%  Similarity=0.063  Sum_probs=33.0

Q ss_pred             cccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCC
Q 046682          145 EHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVN  193 (236)
Q Consensus       145 ~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~  193 (236)
                      .+..+++|++|+++++ .+..++.....+++|+.|++.++ +++.+|..
T Consensus       235 ~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~  281 (330)
T 1xku_A          235 SLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSN  281 (330)
T ss_dssp             TGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred             hccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChh
Confidence            3456778888888776 45666665666788888888887 56666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.84  E-value=7.7e-09  Score=94.70  Aligned_cols=99  Identities=14%  Similarity=0.211  Sum_probs=48.5

Q ss_pred             CCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccc-ccc---c--------ccccccccccccCcccEEec
Q 046682           90 RSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVD-KLR---D--------ISEIIGSEHNFFAQLESLTI  157 (236)
Q Consensus        90 ~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~-~~~---~--------~~~~~~~~~~~~p~L~~L~l  157 (236)
                      ++|+.|+++++ .+....++..+++|++|+++++. +..++... ...   .        ..... .....+|+|+.|++
T Consensus       232 ~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L  308 (597)
T 3oja_B          232 VELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDL  308 (597)
T ss_dssp             SCCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCCCEEE-CSSSCCTTCCEEEC
T ss_pred             CCCCEEECCCC-CCCCChhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCCCCCC-cccccCCCCcEEEC
Confidence            34555555555 45555556667777777777653 33332110 000   0        00000 12234566666666


Q ss_pred             cccccccccCCCCCCCCCccEEeEeCCCCCCCcCCC
Q 046682          158 KWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVN  193 (236)
Q Consensus       158 ~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~  193 (236)
                      +++ .+..++.....+++|+.|++++| ++..+|..
T Consensus       309 s~N-~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~~~  342 (597)
T 3oja_B          309 SHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLKLS  342 (597)
T ss_dssp             CSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCCCC
T ss_pred             CCC-CCCccCcccccCCCCCEEECCCC-CCCCcChh
Confidence            654 23344433344667777777776 35555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.83  E-value=5.5e-09  Score=95.31  Aligned_cols=174  Identities=17%  Similarity=0.126  Sum_probs=112.0

Q ss_pred             cccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccc-cchhhcccCCceeecCCccceeeeccccccc
Q 046682            4 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNL-LHLAYMENLQELDLEDINLEEMKIDSTEEVK   82 (236)
Q Consensus         4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~-~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~   82 (236)
                      +..+.+|+.|+++......+.   ....-.++|+.|++.++.-..... ..+..+++|+.|++++|.+..+.        
T Consensus       372 ~~~~~~L~~L~L~~n~l~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------  440 (606)
T 3vq2_A          372 DLGTNSLRHLDLSFNGAIIMS---ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF--------  440 (606)
T ss_dssp             HHCCSCCCEEECCSCSEEEEC---CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC--------
T ss_pred             hccCCcccEeECCCCccccch---hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc--------
Confidence            456788888887654322221   222223689999999885432211 35678899999999998544331        


Q ss_pred             ccCccCCCCccEEEEecCCCCCc--ch-hhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccc
Q 046682           83 KLFQSGFRSLDRVVISSCKKMKD--LT-WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKW  159 (236)
Q Consensus        83 ~~~~~~l~~L~~L~i~~c~~l~~--l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~  159 (236)
                      +.....+++|+.|+++++ .+..  ++ .+..+++|++|++++| .+..+..            ..+..+++|++|++++
T Consensus       441 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~------------~~~~~l~~L~~L~Ls~  506 (606)
T 3vq2_A          441 DGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISW------------GVFDTLHRLQLLNMSH  506 (606)
T ss_dssp             TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECT------------TTTTTCTTCCEEECCS
T ss_pred             hhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccCh------------hhhcccccCCEEECCC
Confidence            123456788999999887 3443  22 3567889999999887 4444432            2455788899999887


Q ss_pred             ccccccc-CCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          160 GRNLKSV-YPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       160 ~~~L~~i-~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      +. +..+ +.....+++|+.|++++| +++.+|......+.+|+.+
T Consensus       507 N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l  550 (606)
T 3vq2_A          507 NN-LLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFF  550 (606)
T ss_dssp             SC-CSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEE
T ss_pred             Cc-CCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEE
Confidence            73 4444 334456788999999888 4778887643332345544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.81  E-value=4.6e-08  Score=77.21  Aligned_cols=130  Identities=18%  Similarity=0.159  Sum_probs=91.8

Q ss_pred             cccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hh
Q 046682           33 VSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LV  110 (236)
Q Consensus        33 ~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~  110 (236)
                      ++.++.|++.++.-..+....+..+++|++|+++++.++.+...        ....+++|+.|+++++ ++..++.  +.
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~Ls~n-~l~~~~~~~~~   97 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG--------VFNKLTSLTYLNLSTN-QLQSLPNGVFD   97 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT--------TTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh--------hcCCCCCcCEEECCCC-cCCccCHhHhc
Confidence            46899999998854444223367889999999998866554221        1246789999999887 5776653  46


Q ss_pred             cccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCCC
Q 046682          111 FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGCP  185 (236)
Q Consensus       111 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~  185 (236)
                      .+++|++|+++++ .++.+..            ..+..+++|++|++++. .++.+... ...+++|+.|++.+++
T Consensus        98 ~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A           98 KLTQLKELALNTN-QLQSLPD------------GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             TCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CccCCCEEEcCCC-cCcccCH------------hHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence            7899999999876 3444331            23457889999999875 46666554 3458899999998864

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.81  E-value=1.2e-08  Score=85.23  Aligned_cols=89  Identities=16%  Similarity=0.107  Sum_probs=52.2

Q ss_pred             cCCCCccEEEEecCCCCCcch--hhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEecccccccc
Q 046682           87 SGFRSLDRVVISSCKKMKDLT--WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLK  164 (236)
Q Consensus        87 ~~l~~L~~L~i~~c~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~  164 (236)
                      ..+++|+.|+++++ .+....  .+..+++|++|+++++.--.....            ..+..+++|++|+++++ .++
T Consensus       123 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~~l~~L~~L~Ls~n-~l~  188 (306)
T 2z66_A          123 LSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------------DIFTELRNLTFLDLSQC-QLE  188 (306)
T ss_dssp             TTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEGGGEEC------------SCCTTCTTCCEEECTTS-CCC
T ss_pred             hhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCccccccch------------hHHhhCcCCCEEECCCC-CcC
Confidence            34556666666655 233321  234556666666665532111110            34567899999999876 455


Q ss_pred             ccCC-CCCCCCCccEEeEeCCCCCCCc
Q 046682          165 SVYP-NPLPLPKLKKIQVRGCPQLKKL  190 (236)
Q Consensus       165 ~i~~-~~~~~p~L~~L~i~~C~~L~~l  190 (236)
                      .+.. ....+++|+.|+++++. +..+
T Consensus       189 ~~~~~~~~~l~~L~~L~L~~N~-l~~~  214 (306)
T 2z66_A          189 QLSPTAFNSLSSLQVLNMSHNN-FFSL  214 (306)
T ss_dssp             EECTTTTTTCTTCCEEECTTSC-CSBC
T ss_pred             CcCHHHhcCCCCCCEEECCCCc-cCcc
Confidence            5533 34568999999999873 4443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.81  E-value=1.6e-08  Score=83.36  Aligned_cols=155  Identities=13%  Similarity=0.190  Sum_probs=74.4

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeeccccc--------------cc--ccCccCCCCccEEEE
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEE--------------VK--KLFQSGFRSLDRVVI   97 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~--------------~~--~~~~~~l~~L~~L~i   97 (236)
                      ++|+.|+++++.-..+....+..+++|+.|+++++.+..+..+....              ..  ......+++|+.|++
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  131 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  131 (276)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred             cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence            56777777766433332223566677777777766444332111100              00  012334555666666


Q ss_pred             ecCCCCCc--c-hhhhcccCccEEeEecccccceeccccccccccccccccccccCccc----EEeccccccccccCCCC
Q 046682           98 SSCKKMKD--L-TWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLE----SLTIKWGRNLKSVYPNP  170 (236)
Q Consensus        98 ~~c~~l~~--l-~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~----~L~l~~~~~L~~i~~~~  170 (236)
                      +++ .+..  + ..+..+++|++|+++++. ++.+..            ..+..+++|+    +|++++. .++.+....
T Consensus       132 ~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~  196 (276)
T 2z62_A          132 AHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYC------------TDLRVLHQMPLLNLSLDLSLN-PMNFIQPGA  196 (276)
T ss_dssp             CSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEECG------------GGGHHHHTCTTCCEEEECCSS-CCCEECTTS
T ss_pred             cCC-ccceecCchhhccCCCCCEEECCCCC-CCcCCH------------HHhhhhhhccccceeeecCCC-cccccCccc
Confidence            554 3333  1 134455666666665542 222221            1122233333    4555442 344454444


Q ss_pred             CCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          171 LPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       171 ~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      ...++|+.|+++++. ++.+|.......++|+.+
T Consensus       197 ~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  229 (276)
T 2z62_A          197 FKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKI  229 (276)
T ss_dssp             SCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEE
T ss_pred             cCCCcccEEECCCCc-eeecCHhHhcccccccEE
Confidence            555578888888773 777776432222444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.80  E-value=1.9e-09  Score=91.12  Aligned_cols=158  Identities=18%  Similarity=0.136  Sum_probs=105.5

Q ss_pred             cccCcCCcceeEEeeeh--HHHHHHhcCCcccccceEEEEeccCCCCc-ccc-chhhcccCCceeecCC-ccceeeeccc
Q 046682            4 LLGLKHLNVLSWSFGSS--LAVQKFLKYPKLVSITQFVLVYHCKSAPF-NLL-HLAYMENLQELDLEDI-NLEEMKIDST   78 (236)
Q Consensus         4 L~~L~~L~~L~i~~~~~--~~l~~l~~~~~l~~~L~~L~l~~c~~~~~-~~~-~l~~l~~L~~L~i~~c-~le~l~~~~~   78 (236)
                      +..+++|++|+++.+..  .....+..    .++|+.|++.+|....- .+. .+..+++|++|++++| .+....+.  
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~----~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--  187 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNTLAK----NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ--  187 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTT----CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH--
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHHHhc----CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH--
Confidence            46778899998875432  23344433    26999999999954221 112 2678899999999999 87642110  


Q ss_pred             ccccccCccCCC-CccEEEEecCC-CCCc--ch-hhhcccCccEEeEecccccceeccccccccccccccccccccCccc
Q 046682           79 EEVKKLFQSGFR-SLDRVVISSCK-KMKD--LT-WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLE  153 (236)
Q Consensus        79 ~~~~~~~~~~l~-~L~~L~i~~c~-~l~~--l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~  153 (236)
                           .....++ +|+.|++++|. .+.+  ++ .+..+++|++|++++|..+.....            ..+..+++|+
T Consensus       188 -----~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~------------~~l~~l~~L~  250 (336)
T 2ast_B          188 -----VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF------------QEFFQLNYLQ  250 (336)
T ss_dssp             -----HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG------------GGGGGCTTCC
T ss_pred             -----HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH------------HHHhCCCCCC
Confidence                 1124578 99999999986 4542  22 345789999999999875543211            2445679999


Q ss_pred             EEeccccccccccCC-CCCCCCCccEEeEeCC
Q 046682          154 SLTIKWGRNLKSVYP-NPLPLPKLKKIQVRGC  184 (236)
Q Consensus       154 ~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C  184 (236)
                      +|++++|..+..-.. ....+|+|+.|++.+|
T Consensus       251 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          251 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            999998874432211 1235889999999988

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.80  E-value=9.9e-09  Score=91.87  Aligned_cols=38  Identities=13%  Similarity=0.091  Sum_probs=19.6

Q ss_pred             cccCcccEEeccccccccccCCCCCCCCCccEEeEeCCC
Q 046682          147 NFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCP  185 (236)
Q Consensus       147 ~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~  185 (236)
                      ..+++|+.|+++++ .+..++.....+++|+.|++.+++
T Consensus       211 ~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          211 QSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             GGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred             cCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCC
Confidence            34555566665542 344444444445556666555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.80  E-value=1.6e-08  Score=89.91  Aligned_cols=99  Identities=14%  Similarity=0.099  Sum_probs=52.1

Q ss_pred             ccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeeccccccccc
Q 046682            5 LGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKL   84 (236)
Q Consensus         5 ~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~   84 (236)
                      ..+++|++|+++......++.+    .-.++|+.|+++++.-..+   .+..+++|++|++++|.+..+.          
T Consensus        39 ~~l~~L~~L~Ls~n~l~~~~~l----~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~~----------  101 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSITDMTGI----EKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNLD----------  101 (457)
T ss_dssp             HHHTTCCEEECCSSCCCCCTTG----GGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC----------
T ss_pred             hHcCCCCEEEccCCCcccChhh----cccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCceee----------
Confidence            3456666666654322222211    1125677777776643222   2556667777777766444331          


Q ss_pred             CccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecc
Q 046682           85 FQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFC  123 (236)
Q Consensus        85 ~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C  123 (236)
                       ...+++|+.|+++++ +++.++ +..+++|++|+++++
T Consensus       102 -~~~l~~L~~L~L~~N-~l~~l~-~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A          102 -VTPLTKLTYLNCDTN-KLTKLD-VSQNPLLTYLNCARN  137 (457)
T ss_dssp             -CTTCTTCCEEECCSS-CCSCCC-CTTCTTCCEEECTTS
T ss_pred             -cCCCCcCCEEECCCC-cCCeec-CCCCCcCCEEECCCC
Confidence             234566666666655 455543 455666666666554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.78  E-value=4.7e-08  Score=78.67  Aligned_cols=129  Identities=17%  Similarity=0.165  Sum_probs=82.5

Q ss_pred             cccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hh
Q 046682           33 VSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LV  110 (236)
Q Consensus        33 ~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~  110 (236)
                      +++|+.|.++++.-..+....+..+++|+.|+++++.+..+...        ....+++|+.|+++++ +++.++.  +.
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~--------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~  109 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG--------VFDSLTQLTVLDLGTN-QLTVLPSAVFD  109 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------TTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh--------hcccCCCcCEEECCCC-cCCccChhHhC
Confidence            36788888887754333224466778888888887755544211        1245778888888776 5666643  45


Q ss_pred             cccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCCC
Q 046682          111 FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGCP  185 (236)
Q Consensus       111 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~  185 (236)
                      .+++|++|+++++ .+..+.             ..+..+++|++|++++. +++.+... ...+++|+.|.+.+.|
T Consensus       110 ~l~~L~~L~Ls~N-~l~~lp-------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          110 RLVHLKELFMCCN-KLTELP-------------RGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TCTTCCEEECCSS-CCCSCC-------------TTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             cchhhCeEeccCC-cccccC-------------cccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence            6788888888765 344433             23456778888888764 55665543 3356777777777653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.78  E-value=1.1e-08  Score=94.31  Aligned_cols=183  Identities=15%  Similarity=0.078  Sum_probs=101.0

Q ss_pred             ccccCcCCcceeEEeeehHH---------------HHHHhcCCc--ccccceEEEEeccCCCCccccchhhcccCCceee
Q 046682            3 ELLGLKHLNVLSWSFGSSLA---------------VQKFLKYPK--LVSITQFVLVYHCKSAPFNLLHLAYMENLQELDL   65 (236)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~---------------l~~l~~~~~--l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i   65 (236)
                      ++..+++|++|+++.....+               ...+.....  -.++|+.|.+++|.-.......+.++++|+.|++
T Consensus       201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  280 (636)
T 4eco_A          201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV  280 (636)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred             HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence            46788899999988544222               001333333  3478999999998643222245788899999999


Q ss_pred             cCCc-cce--eeecccccccccCccCCCCccEEEEecCCCCCcchh---hhcccCccEEeEecccccc-eeccccc--cc
Q 046682           66 EDIN-LEE--MKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW---LVFVQILKQLRIVFCTEME-EIISVDK--LR  136 (236)
Q Consensus        66 ~~c~-le~--l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~---l~~lp~L~~L~i~~C~~L~-~i~~~~~--~~  136 (236)
                      ++|. +..  ++.....   ......+++|+.|+++++ ++..++.   +..+++|++|+++++. +. .+.....  ..
T Consensus       281 s~n~~l~~~~lp~~~~~---L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip~~~~l~~L  355 (636)
T 4eco_A          281 ACNRGISGEQLKDDWQA---LADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEIKL  355 (636)
T ss_dssp             TTCTTSCHHHHHHHHHH---HHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCC-CEEECCCCEEEEEE
T ss_pred             cCCCCCccccchHHHHh---hhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCc-CccchhhhCCCCCC
Confidence            9884 653  3211000   000112367777777776 4556543   5677777777777653 22 2220000  00


Q ss_pred             --------cccccccccccccCc-ccEEeccccccccccCCCCC--CCCCccEEeEeCCCCCCCcCC
Q 046682          137 --------DISEIIGSEHNFFAQ-LESLTIKWGRNLKSVYPNPL--PLPKLKKIQVRGCPQLKKLPV  192 (236)
Q Consensus       137 --------~~~~~~~~~~~~~p~-L~~L~l~~~~~L~~i~~~~~--~~p~L~~L~i~~C~~L~~lp~  192 (236)
                              ...... ..+..+++ |++|++++.. ++.++....  .+++|+.|+++++.--...|.
T Consensus       356 ~~L~L~~N~l~~lp-~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~  420 (636)
T 4eco_A          356 ASLNLAYNQITEIP-ANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK  420 (636)
T ss_dssp             SEEECCSSEEEECC-TTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred             CEEECCCCcccccc-HhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchh
Confidence                    000000 23455666 7777777654 445554322  244777888777754444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.77  E-value=1.1e-08  Score=87.44  Aligned_cols=40  Identities=18%  Similarity=0.122  Sum_probs=18.9

Q ss_pred             CCCCccEEEEecCCCCCcchh---hhcccCccEEeEecccccce
Q 046682           88 GFRSLDRVVISSCKKMKDLTW---LVFVQILKQLRIVFCTEMEE  128 (236)
Q Consensus        88 ~l~~L~~L~i~~c~~l~~l~~---l~~lp~L~~L~i~~C~~L~~  128 (236)
                      .+++|+.|+++++ .++.++.   +..+++|++|+++++..+..
T Consensus       122 ~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~  164 (353)
T 2z80_A          122 PLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTK  164 (353)
T ss_dssp             TCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred             CCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccc
Confidence            3455555555544 3444332   33455555555555543433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.77  E-value=5.9e-08  Score=78.96  Aligned_cols=129  Identities=18%  Similarity=0.223  Sum_probs=96.3

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVF  111 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~  111 (236)
                      ++|+.|+++++.-..+....+..+++|+.|+++++.+..+..+        ....+++|+.|+++++ +++.++.  +..
T Consensus        59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~L~~N-~l~~~~~~~~~~  129 (251)
T 3m19_A           59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG--------VFDHLTQLDKLYLGGN-QLKSLPSGVFDR  129 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT--------TTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred             ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChh--------HhcccCCCCEEEcCCC-cCCCcChhHhcc
Confidence            7899999999864444334478899999999999966655321        2356899999999987 6777754  467


Q ss_pred             ccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCCC
Q 046682          112 VQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGCP  185 (236)
Q Consensus       112 lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~  185 (236)
                      +++|++|+++++ .++.+..            ..+..+++|++|++++. .++.++.. ...+++|+.|.+.+++
T Consensus       130 l~~L~~L~Ls~N-~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          130 LTKLKELRLNTN-QLQSIPA------------GAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CCcccEEECcCC-cCCccCH------------HHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence            999999999887 5554432            24567899999999875 46666553 3468999999999864

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.76  E-value=2.1e-08  Score=91.81  Aligned_cols=37  Identities=16%  Similarity=-0.025  Sum_probs=18.3

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCcc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINL   70 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~l   70 (236)
                      ++|+.|+++++.-..+....+..+++|+.|++++|.+
T Consensus        99 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  135 (597)
T 3oja_B           99 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL  135 (597)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCC
Confidence            4555666655533222212245556666666665533

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.76  E-value=1.9e-08  Score=84.05  Aligned_cols=84  Identities=18%  Similarity=0.206  Sum_probs=53.6

Q ss_pred             cCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEecccccccc
Q 046682           87 SGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLK  164 (236)
Q Consensus        87 ~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~  164 (236)
                      ..+++|+.|+++++ .+..++.  +..+++|+.|+++++ +++.+..            ..+..+++|++|++++. .++
T Consensus       121 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~------------~~~~~l~~L~~L~L~~N-~l~  185 (290)
T 1p9a_G          121 RGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPA------------GLLNGLENLDTLLLQEN-SLY  185 (290)
T ss_dssp             TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCT------------TTTTTCTTCCEEECCSS-CCC
T ss_pred             cCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCccCH------------HHhcCcCCCCEEECCCC-cCC
Confidence            34556666666655 4554432  235566666666554 2333321            23456899999999874 577


Q ss_pred             ccCCCCCCCCCccEEeEeCCC
Q 046682          165 SVYPNPLPLPKLKKIQVRGCP  185 (236)
Q Consensus       165 ~i~~~~~~~p~L~~L~i~~C~  185 (236)
                      .++.+....++|+.|.+.+.|
T Consensus       186 ~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          186 TIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CCCTTTTTTCCCSEEECCSCC
T ss_pred             ccChhhcccccCCeEEeCCCC
Confidence            888777778899999988643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.76  E-value=4.7e-08  Score=87.55  Aligned_cols=157  Identities=15%  Similarity=0.144  Sum_probs=87.1

Q ss_pred             cceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch----hhh
Q 046682           35 ITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT----WLV  110 (236)
Q Consensus        35 ~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~----~l~  110 (236)
                      +++.|.+.++.-...  .....+++|++|++++|.+....        +.....+++|+.|+++++ ++..++    .+.
T Consensus       303 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~  371 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHM--LCPSKISPFLHLDFSNNLLTDTV--------FENCGHLTELETLILQMN-QLKELSKIAEMTT  371 (520)
T ss_dssp             CCSEEEEESSCCCCC--CCCSSCCCCCEEECCSSCCCTTT--------TTTCCCCSSCCEEECCSS-CCCBHHHHHHHHT
T ss_pred             ceeEEEcCCCccccc--cchhhCCcccEEEeECCccChhh--------hhhhccCCCCCEEEccCC-ccCccccchHHHh
Confidence            466666666643222  11246677777777777433211        122345677777777776 455432    245


Q ss_pred             cccCccEEeEecccccceecccc-ccc-ccc-------cccccccccc-CcccEEeccccccccccCCCCCCCCCccEEe
Q 046682          111 FVQILKQLRIVFCTEMEEIISVD-KLR-DIS-------EIIGSEHNFF-AQLESLTIKWGRNLKSVYPNPLPLPKLKKIQ  180 (236)
Q Consensus       111 ~lp~L~~L~i~~C~~L~~i~~~~-~~~-~~~-------~~~~~~~~~~-p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~  180 (236)
                      .+++|++|+++++.--..+.... ... ...       .........+ ++|++|+++++ +++.++.....+++|+.|+
T Consensus       372 ~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~  450 (520)
T 2z7x_B          372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELN  450 (520)
T ss_dssp             TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEE
T ss_pred             hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEE
Confidence            67777777777654222122110 000 000       0000011122 68999999876 5667776666899999999


Q ss_pred             EeCCCCCCCcCCCCCCCCCcceEE
Q 046682          181 VRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       181 i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      +++| +++.+|.......++|+.+
T Consensus       451 L~~N-~l~~l~~~~~~~l~~L~~L  473 (520)
T 2z7x_B          451 VASN-QLKSVPDGIFDRLTSLQKI  473 (520)
T ss_dssp             CCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCCC-cCCccCHHHhccCCcccEE
Confidence            9998 7888987622222455544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.75  E-value=6.7e-08  Score=82.47  Aligned_cols=132  Identities=14%  Similarity=0.101  Sum_probs=89.4

Q ss_pred             ccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--h
Q 046682           32 LVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--L  109 (236)
Q Consensus        32 l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l  109 (236)
                      +.++++.|+++++.-..+....+..+++|+.|+++++.+..+..        .....+++|+.|+++++ +++.++.  +
T Consensus        50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~  120 (353)
T 2z80_A           50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE--------DSFSSLGSLEHLDLSYN-YLSNLSSSWF  120 (353)
T ss_dssp             CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECT--------TTTTTCTTCCEEECCSS-CCSSCCHHHH
T ss_pred             ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCH--------hhcCCCCCCCEEECCCC-cCCcCCHhHh
Confidence            34689999999886444432357889999999999986665522        12456889999999987 6777754  5


Q ss_pred             hcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCC
Q 046682          110 VFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGC  184 (236)
Q Consensus       110 ~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C  184 (236)
                      ..+++|++|+++++ .++.+...           ..+..+++|++|+++++..+..+... ...+++|++|++.++
T Consensus       121 ~~l~~L~~L~L~~n-~l~~l~~~-----------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          121 KPLSSLTFLNLLGN-PYKTLGET-----------SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             TTCTTCSEEECTTC-CCSSSCSS-----------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             CCCccCCEEECCCC-CCcccCch-----------hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            68999999999876 34433310           12345677777777766555555432 334666777777666

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.74  E-value=4.1e-08  Score=87.17  Aligned_cols=166  Identities=11%  Similarity=0.073  Sum_probs=100.9

Q ss_pred             ccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeeccccccc
Q 046682            3 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVK   82 (236)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~   82 (236)
                      ++..+.+|++|+++......+    .... .++|+.|+++++.-..+   .+..+++|++|++++|.+..+.        
T Consensus        59 ~l~~l~~L~~L~Ls~n~l~~~----~~~~-l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~N~l~~l~--------  122 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNITTL----DLSQ-NTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLD--------  122 (457)
T ss_dssp             TGGGCTTCSEEECCSSCCSCC----CCTT-CTTCSEEECCSSCCSCC---CCTTCTTCCEEECCSSCCSCCC--------
T ss_pred             hhcccCCCCEEEccCCcCCeE----cccc-CCCCCEEECcCCCCcee---ecCCCCcCCEEECCCCcCCeec--------
Confidence            456778888888875443322    1222 37899999998854333   3678889999999988555442        


Q ss_pred             ccCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccc-ccccc-----cccccccccccCcccEEe
Q 046682           83 KLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVD-KLRDI-----SEIIGSEHNFFAQLESLT  156 (236)
Q Consensus        83 ~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~-~~~~~-----~~~~~~~~~~~p~L~~L~  156 (236)
                         ...+++|+.|+++++ .++.+ .+..+++|++|++++|..+..+.... .....     .......+..+++|+.|.
T Consensus       123 ---~~~l~~L~~L~l~~N-~l~~l-~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~  197 (457)
T 3bz5_A          123 ---VSQNPLLTYLNCARN-TLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLN  197 (457)
T ss_dssp             ---CTTCTTCCEEECTTS-CCSCC-CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEE
T ss_pred             ---CCCCCcCCEEECCCC-cccee-ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccCCCCCEEE
Confidence               234677777777766 45555 35566777777777665444331000 00000     000001245677888888


Q ss_pred             ccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCC
Q 046682          157 IKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVN  193 (236)
Q Consensus       157 l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~  193 (236)
                      ++++ +++.+.  ...+++|+.|+++++ ++..+|.+
T Consensus       198 l~~N-~l~~~~--l~~l~~L~~L~Ls~N-~l~~ip~~  230 (457)
T 3bz5_A          198 CDTN-NITKLD--LNQNIQLTFLDCSSN-KLTEIDVT  230 (457)
T ss_dssp             CCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCCCT
T ss_pred             CcCC-cCCeec--cccCCCCCEEECcCC-cccccCcc
Confidence            8764 344442  446789999999987 67777743

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.74  E-value=4.2e-08  Score=89.47  Aligned_cols=154  Identities=14%  Similarity=0.049  Sum_probs=74.8

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCCCCCcc----hh
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDL----TW  108 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l----~~  108 (236)
                      ++|+.|++.+|.-..+  +.+ .+++|+.|.+++| .+..+           ....+++|+.|+++++ .+..+    ..
T Consensus       307 ~~L~~L~l~~n~l~~l--p~~-~l~~L~~L~l~~n~~~~~~-----------~~~~l~~L~~L~ls~n-~l~~~~~~~~~  371 (606)
T 3vq2_A          307 FKWQSLSIIRCQLKQF--PTL-DLPFLKSLTLTMNKGSISF-----------KKVALPSLSYLDLSRN-ALSFSGCCSYS  371 (606)
T ss_dssp             CCCSEEEEESCCCSSC--CCC-CCSSCCEEEEESCSSCEEC-----------CCCCCTTCCEEECCSS-CEEEEEECCHH
T ss_pred             ccCCEEEcccccCccc--ccC-CCCccceeeccCCcCccch-----------hhccCCCCCEEECcCC-ccCCCcchhhh
Confidence            4555555555543222  233 5555555555555 33322           1234566666666665 34332    12


Q ss_pred             hhcccCccEEeEecccccceeccccccc---c--------cccccc-ccccccCcccEEeccccccccccCCCCCCCCCc
Q 046682          109 LVFVQILKQLRIVFCTEMEEIISVDKLR---D--------ISEIIG-SEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKL  176 (236)
Q Consensus       109 l~~lp~L~~L~i~~C~~L~~i~~~~~~~---~--------~~~~~~-~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L  176 (236)
                      +..+++|++|++++|. +..+...-...   .        ...... ..+..+++|++|+++++.-....+.....+++|
T Consensus       372 ~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  450 (606)
T 3vq2_A          372 DLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL  450 (606)
T ss_dssp             HHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred             hccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC
Confidence            3456667777766654 33222100000   0        000000 234566777777777765333333344567788


Q ss_pred             cEEeEeCCCCCCC-cCCCCCCCCCcceEE
Q 046682          177 KKIQVRGCPQLKK-LPVNSSSVKERRVVI  204 (236)
Q Consensus       177 ~~L~i~~C~~L~~-lp~~~~~~~~~l~~~  204 (236)
                      +.|.+.+|.--.. +|...... .+|+.+
T Consensus       451 ~~L~l~~n~l~~~~~~~~~~~l-~~L~~L  478 (606)
T 3vq2_A          451 NTLKMAGNSFKDNTLSNVFANT-TNLTFL  478 (606)
T ss_dssp             CEEECTTCEEGGGEECSCCTTC-TTCCEE
T ss_pred             CEEECCCCcCCCcchHHhhccC-CCCCEE
Confidence            8888887743322 44433222 445444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.73  E-value=1.5e-08  Score=75.79  Aligned_cols=125  Identities=14%  Similarity=0.137  Sum_probs=86.6

Q ss_pred             cccceEEEEeccCCC--CccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCc-chhh
Q 046682           33 VSITQFVLVYHCKSA--PFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKD-LTWL  109 (236)
Q Consensus        33 ~~~L~~L~l~~c~~~--~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~-l~~l  109 (236)
                      +++++.|++.+|.-.  .++ ..+..+++|+.|.+++|.+..+  .        ....+++|+.|+++++ .+.. ++..
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~--------~~~~l~~L~~L~Ls~n-~i~~~~~~~   83 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI--A--------NLPKLNKLKKLELSDN-RVSGGLEVL   83 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC--T--------TCCCCTTCCEEECCSS-CCCSCTHHH
T ss_pred             CccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc--h--------hhhcCCCCCEEECCCC-cccchHHHH
Confidence            378999999998543  231 3457889999999999865544  1        2356889999999988 5666 5443


Q ss_pred             -hcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCC----CCCCCCCccEEeEe
Q 046682          110 -VFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP----NPLPLPKLKKIQVR  182 (236)
Q Consensus       110 -~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~----~~~~~p~L~~L~i~  182 (236)
                       ..+++|++|+++++. ++.+...           ..+..+++|++|+++++ .+..++.    ....+|+|+.|+++
T Consensus        84 ~~~l~~L~~L~ls~N~-i~~~~~~-----------~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           84 AEKCPNLTHLNLSGNK-IKDLSTI-----------EPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHHCTTCCEEECTTSC-CCSHHHH-----------GGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             hhhCCCCCEEECCCCc-CCChHHH-----------HHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence             458999999998874 4432100           24567889999999886 4555543    23357888888665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.72  E-value=2.9e-08  Score=93.51  Aligned_cols=121  Identities=18%  Similarity=0.078  Sum_probs=53.8

Q ss_pred             ccccCcCCcceeEEeeehH-HHHHHhcCCcccccceEEEEeccCCC-CccccchhhcccCCceeecCCcccee-------
Q 046682            3 ELLGLKHLNVLSWSFGSSL-AVQKFLKYPKLVSITQFVLVYHCKSA-PFNLLHLAYMENLQELDLEDINLEEM-------   73 (236)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~-~l~~l~~~~~l~~~L~~L~l~~c~~~-~~~~~~l~~l~~L~~L~i~~c~le~l-------   73 (236)
                      .+..+.+|++|+++..... .+........ .++|+.|+++++.-. ......+.++++|++|++++|.+...       
T Consensus        95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  173 (768)
T 3rgz_A           95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL  173 (768)
T ss_dssp             CCCCCTTCCEEECCSSEEEEEGGGGGGGGG-CTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred             hhccCCCCCEEECCCCcCCCcCCChHHHhC-CCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence            4556677777776532211 0111001111 256777777766321 11111124556666666655522211       


Q ss_pred             ----------eecccccccccCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEeccc
Q 046682           74 ----------KIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCT  124 (236)
Q Consensus        74 ----------~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~  124 (236)
                                .+....-.+..+...+++|+.|+++++.--..++.+..+++|++|++++|.
T Consensus       174 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~  234 (768)
T 3rgz_A          174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK  234 (768)
T ss_dssp             TTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC
T ss_pred             hccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc
Confidence                      111100001112245566666666666322223335566666666666653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.71  E-value=1.1e-08  Score=92.38  Aligned_cols=179  Identities=15%  Similarity=0.029  Sum_probs=97.2

Q ss_pred             cCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCcc--ccchhhcccCCceeecCCccceeeec-------
Q 046682            6 GLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFN--LLHLAYMENLQELDLEDINLEEMKID-------   76 (236)
Q Consensus         6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~--~~~l~~l~~L~~L~i~~c~le~l~~~-------   76 (236)
                      .+.+|+.|++......   ..... .-.++|+.|+++++.-....  ...+..+++|+.|++++|.+..+...       
T Consensus       323 ~l~~L~~L~l~~n~~~---~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L  398 (570)
T 2z63_A          323 KLKSLKRLTFTSNKGG---NAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL  398 (570)
T ss_dssp             BCSSCCEEEEESCBSC---CBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred             cccccCEEeCcCCccc---ccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCC
Confidence            4566777776643211   11111 22367777777776432111  12345667777777776633333211       


Q ss_pred             ------cccccc-c--cCccCCCCccEEEEecCCCCCcc-h-hhhcccCccEEeEecccccc-eeccccccccccccccc
Q 046682           77 ------STEEVK-K--LFQSGFRSLDRVVISSCKKMKDL-T-WLVFVQILKQLRIVFCTEME-EIISVDKLRDISEIIGS  144 (236)
Q Consensus        77 ------~~~~~~-~--~~~~~l~~L~~L~i~~c~~l~~l-~-~l~~lp~L~~L~i~~C~~L~-~i~~~~~~~~~~~~~~~  144 (236)
                            ...-.+ .  .....+++|+.|++++| .+... + .+..+++|++|++++|.-.. .++             .
T Consensus       399 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p-------------~  464 (570)
T 2z63_A          399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-------------D  464 (570)
T ss_dssp             CEEECTTSEEESCTTSCTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-------------S
T ss_pred             CEEEccCCccccccchhhhhcCCCCCEEeCcCC-cccccchhhhhcCCcCcEEECcCCcCccccch-------------h
Confidence                  000000 0  12344566777777666 33332 1 24456777777777664221 111             2


Q ss_pred             cccccCcccEEecccccccccc-CCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          145 EHNFFAQLESLTIKWGRNLKSV-YPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       145 ~~~~~p~L~~L~l~~~~~L~~i-~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      .+..+++|++|+++++. ++.+ +.....+++|+.|++++| +++.+|.......++|+.+
T Consensus       465 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L  523 (570)
T 2z63_A          465 IFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKI  523 (570)
T ss_dssp             CCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred             hhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEE
Confidence            45678899999998874 4555 334556889999999998 6777775433223555554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.71  E-value=3.1e-08  Score=89.21  Aligned_cols=158  Identities=19%  Similarity=0.155  Sum_probs=102.7

Q ss_pred             ccCcCCcceeEEeeehHH-HHHHhcCCcccccceEEEEeccCCCCccc--cchhhcccCCceeecCCccceeeecccccc
Q 046682            5 LGLKHLNVLSWSFGSSLA-VQKFLKYPKLVSITQFVLVYHCKSAPFNL--LHLAYMENLQELDLEDINLEEMKIDSTEEV   81 (236)
Q Consensus         5 ~~L~~L~~L~i~~~~~~~-l~~l~~~~~l~~~L~~L~l~~c~~~~~~~--~~l~~l~~L~~L~i~~c~le~l~~~~~~~~   81 (236)
                      +.+++|+.|+++...... +..-.....-.++|+.|+++++.-..+..  ..+..+++|+.|++++|.+..++       
T Consensus       331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-------  403 (549)
T 2z81_A          331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP-------  403 (549)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCC-------
T ss_pred             hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCC-------
Confidence            468889999987543222 11111112223789999999985433321  22678899999999999665552       


Q ss_pred             cccCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682           82 KKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR  161 (236)
Q Consensus        82 ~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  161 (236)
                        .....+++|+.|+++++ +++.++. ...++|++|++++| +++.++                ..+++|++|+++++ 
T Consensus       404 --~~~~~~~~L~~L~Ls~N-~l~~l~~-~~~~~L~~L~Ls~N-~l~~~~----------------~~l~~L~~L~Ls~N-  461 (549)
T 2z81_A          404 --DSCQWPEKMRFLNLSST-GIRVVKT-CIPQTLEVLDVSNN-NLDSFS----------------LFLPRLQELYISRN-  461 (549)
T ss_dssp             --SCCCCCTTCCEEECTTS-CCSCCCT-TSCTTCSEEECCSS-CCSCCC----------------CCCTTCCEEECCSS-
T ss_pred             --hhhcccccccEEECCCC-Ccccccc-hhcCCceEEECCCC-Chhhhc----------------ccCChhcEEECCCC-
Confidence              23345788999999888 4666542 22468889988877 333321                25678888888776 


Q ss_pred             cccccCCCCCCCCCccEEeEeCCCCCCCcCCC
Q 046682          162 NLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVN  193 (236)
Q Consensus       162 ~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~  193 (236)
                      +++.++. ...+++|+.|+++++ +++.+|..
T Consensus       462 ~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~  491 (549)
T 2z81_A          462 KLKTLPD-ASLFPVLLVMKISRN-QLKSVPDG  491 (549)
T ss_dssp             CCSSCCC-GGGCTTCCEEECCSS-CCCCCCTT
T ss_pred             ccCcCCC-cccCccCCEEecCCC-ccCCcCHH
Confidence            5666654 235778888888887 66666654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.70  E-value=8.5e-08  Score=80.46  Aligned_cols=137  Identities=15%  Similarity=0.193  Sum_probs=67.4

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccce---eeecccccccccCccCCCCccEEEEecCCCCCcchh--
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEE---MKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--  108 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~---l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--  108 (236)
                      ++|+.|+++++.-.......+..+++|++|++++|.+..   +..       ......+++|+.|++++| +++.++.  
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~l~~~~  216 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA-------ALCPHKFPAIQNLALRNT-GMETPTGVC  216 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT-------TSCTTSSCCCCSCBCCSS-CCCCHHHHH
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH-------HHhhhcCCCCCEEECCCC-CCCchHHHH
Confidence            455555555553322221234455555555555552211   100       001134556666666665 4544432  


Q ss_pred             ---hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCC
Q 046682          109 ---LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCP  185 (236)
Q Consensus       109 ---l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~  185 (236)
                         ...+++|++|+++++. +..+.+..       .  .....+++|++|+++++ .++.++...  +++|+.|+++++ 
T Consensus       217 ~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-------~--~~~~~~~~L~~L~Ls~N-~l~~lp~~~--~~~L~~L~Ls~N-  282 (310)
T 4glp_A          217 AALAAAGVQPHSLDLSHNS-LRATVNPS-------A--PRCMWSSALNSLNLSFA-GLEQVPKGL--PAKLRVLDLSSN-  282 (310)
T ss_dssp             HHHHHHTCCCSSEECTTSC-CCCCCCSC-------C--SSCCCCTTCCCEECCSS-CCCSCCSCC--CSCCSCEECCSC-
T ss_pred             HHHHhcCCCCCEEECCCCC-CCccchhh-------H--HhccCcCcCCEEECCCC-CCCchhhhh--cCCCCEEECCCC-
Confidence               2345666666666543 22221100       0  11222368888888764 355555433  378888888877 


Q ss_pred             CCCCcCC
Q 046682          186 QLKKLPV  192 (236)
Q Consensus       186 ~L~~lp~  192 (236)
                      +++.+|.
T Consensus       283 ~l~~~~~  289 (310)
T 4glp_A          283 RLNRAPQ  289 (310)
T ss_dssp             CCCSCCC
T ss_pred             cCCCCch
Confidence            5666655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.67  E-value=1.3e-07  Score=90.26  Aligned_cols=118  Identities=14%  Similarity=0.048  Sum_probs=67.7

Q ss_pred             ccccCcCCcceeEEeeehHH--------------H-HHHhcCCc--ccccceEEEEeccCCCCccccchhhcccCCceee
Q 046682            3 ELLGLKHLNVLSWSFGSSLA--------------V-QKFLKYPK--LVSITQFVLVYHCKSAPFNLLHLAYMENLQELDL   65 (236)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~--------------l-~~l~~~~~--l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i   65 (236)
                      ++.+|++|+.|+++......              + ..+.....  -.++|+.|.+++|.-.......+.++++|+.|.+
T Consensus       443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L  522 (876)
T 4ecn_A          443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI  522 (876)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred             HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence            46788999999988544222              0 01333322  3478999999998642221245788899999999


Q ss_pred             cCCc-cce--eeecccccccccCccCCCCccEEEEecCCCCCcchh---hhcccCccEEeEecc
Q 046682           66 EDIN-LEE--MKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW---LVFVQILKQLRIVFC  123 (236)
Q Consensus        66 ~~c~-le~--l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~---l~~lp~L~~L~i~~C  123 (236)
                      ++|. +..  ++.....-  ......+++|+.|+++++ .+..++.   +..+++|+.|+++++
T Consensus       523 s~N~~lsg~~iP~~i~~L--~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N  583 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRL--ADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHN  583 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHH--HHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTS
T ss_pred             cCCCCcccccchHHHHhh--hhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCC
Confidence            9883 653  22110000  001223456666666665 3445543   456666666666654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.67  E-value=1.4e-07  Score=86.01  Aligned_cols=142  Identities=13%  Similarity=0.077  Sum_probs=65.4

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccc-eeeecccccccccCccCCCCccEEEEecCCCCCcch----h
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLE-EMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT----W  108 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le-~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~----~  108 (236)
                      ++|+.|++.++.-.......+..+++|+.|.+++|.+. .+..        .....+++|+.|+++++ .+..+.    .
T Consensus       301 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~  371 (606)
T 3t6q_A          301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT--------GCLENLENLRELDLSHD-DIETSDCCNLQ  371 (606)
T ss_dssp             TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS--------STTTTCTTCCEEECCSS-CCCEEEESTTT
T ss_pred             ccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch--------hhhhccCcCCEEECCCC-ccccccCcchh
Confidence            45555555555332221123455555666655555211 1211        11334566666666665 344332    2


Q ss_pred             hhcccCccEEeEecccccceecccc----cccc--------cccc-ccccccccCcccEEeccccccccccCCCCCCCCC
Q 046682          109 LVFVQILKQLRIVFCTEMEEIISVD----KLRD--------ISEI-IGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPK  175 (236)
Q Consensus       109 l~~lp~L~~L~i~~C~~L~~i~~~~----~~~~--------~~~~-~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~  175 (236)
                      +..+++|++|+++++. +..+....    ....        .... ....+..+++|++|+++++.--...+.....+++
T Consensus       372 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  450 (606)
T 3t6q_A          372 LRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA  450 (606)
T ss_dssp             TTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred             cccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence            4456666666666653 22221100    0000        0000 0012445677777777665422222222345677


Q ss_pred             ccEEeEeCCC
Q 046682          176 LKKIQVRGCP  185 (236)
Q Consensus       176 L~~L~i~~C~  185 (236)
                      |++|++++|+
T Consensus       451 L~~L~L~~n~  460 (606)
T 3t6q_A          451 LQHLNLQGNH  460 (606)
T ss_dssp             CCEEECTTCB
T ss_pred             CCEEECCCCC
Confidence            7777777774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.67  E-value=4.5e-08  Score=82.83  Aligned_cols=47  Identities=21%  Similarity=0.268  Sum_probs=36.0

Q ss_pred             cccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCC
Q 046682          145 EHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVN  193 (236)
Q Consensus       145 ~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~  193 (236)
                      .+..+++|++|+++++ .++.++.....+++|+.|+++++ +++.+|..
T Consensus       236 ~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~  282 (332)
T 2ft3_A          236 SLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVN  282 (332)
T ss_dssp             GGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTT
T ss_pred             HhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChh
Confidence            4567889999999876 56677766667889999999987 57777654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.66  E-value=9.7e-08  Score=78.53  Aligned_cols=125  Identities=19%  Similarity=0.246  Sum_probs=90.1

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhccc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQ  113 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp  113 (236)
                      ++|+.|++.++.-..+  +.+..+++|+.|++++|.+..+.          ....+++|+.|+++++ +++.++.+.. +
T Consensus        41 ~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~L~~N~i~~~~----------~l~~l~~L~~L~L~~N-~l~~l~~~~~-~  106 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQISDLS----------PLKDLTKLEELSVNRN-RLKNLNGIPS-A  106 (263)
T ss_dssp             TTCSEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG----------GGTTCSSCCEEECCSS-CCSCCTTCCC-S
T ss_pred             CcCcEEECcCCCcccc--hHHhhCCCCCEEECCCCccCCCh----------hhccCCCCCEEECCCC-ccCCcCcccc-C
Confidence            6788888888854444  46778889999999888655442          1456888999999887 6777765555 8


Q ss_pred             CccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCc
Q 046682          114 ILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKL  190 (236)
Q Consensus       114 ~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~l  190 (236)
                      +|++|+++++ .++.+              ..+..+++|+.|++++.. ++.+. ....+++|+.|+++++ ++..+
T Consensus       107 ~L~~L~L~~N-~l~~~--------------~~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N-~i~~~  165 (263)
T 1xeu_A          107 CLSRLFLDNN-ELRDT--------------DSLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGN-EITNT  165 (263)
T ss_dssp             SCCEEECCSS-CCSBS--------------GGGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTS-CCCBC
T ss_pred             cccEEEccCC-ccCCC--------------hhhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCC-cCcch
Confidence            8999999887 34433              245578999999998753 55553 3446899999999987 44444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.65  E-value=6.9e-08  Score=74.33  Aligned_cols=125  Identities=11%  Similarity=0.100  Sum_probs=82.9

Q ss_pred             ccceEEEEeccCCCCccccchhhcc-cCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hh
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYME-NLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LV  110 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~-~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~  110 (236)
                      ..++.|.+.++.-..+  +.+..+. +|+.|++++|.+..+  .        ....+++|+.|+++++ .+..++.  ..
T Consensus        19 ~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~l~~~--~--------~l~~l~~L~~L~Ls~N-~l~~~~~~~~~   85 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKL--D--------GFPLLRRLKTLLVNNN-RICRIGEGLDQ   85 (176)
T ss_dssp             TSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCEE--C--------CCCCCSSCCEEECCSS-CCCEECSCHHH
T ss_pred             CCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCCCCcc--c--------ccccCCCCCEEECCCC-cccccCcchhh
Confidence            6788999988854433  4455555 899999998866654  1        2346788999999887 5777653  36


Q ss_pred             cccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCC----CCCCCCccEEeEeCC
Q 046682          111 FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN----PLPLPKLKKIQVRGC  184 (236)
Q Consensus       111 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~----~~~~p~L~~L~i~~C  184 (236)
                      .+++|++|+++++. +..+...           ..+..+++|+.|++.+.+ +..++..    ...+|+|+.|++.++
T Consensus        86 ~l~~L~~L~L~~N~-i~~~~~~-----------~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           86 ALPDLTELILTNNS-LVELGDL-----------DPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             HCTTCCEEECCSCC-CCCGGGG-----------GGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             cCCCCCEEECCCCc-CCcchhh-----------HhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence            78999999998763 4433210           145578889999998764 3333332    234666666666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.65  E-value=6.1e-08  Score=88.36  Aligned_cols=37  Identities=11%  Similarity=0.037  Sum_probs=21.7

Q ss_pred             cCCCCccEEEEecCCCCCcch--hhhcccCccEEeEeccc
Q 046682           87 SGFRSLDRVVISSCKKMKDLT--WLVFVQILKQLRIVFCT  124 (236)
Q Consensus        87 ~~l~~L~~L~i~~c~~l~~l~--~l~~lp~L~~L~i~~C~  124 (236)
                      ..+++|+.|++++| .+....  .+..+++|++|++++|.
T Consensus       422 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~  460 (606)
T 3t6q_A          422 QNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNH  460 (606)
T ss_dssp             TTCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred             hCcccCCEEECCCC-ccCCcCHHHHhCCCCCCEEECCCCC
Confidence            45566777777666 343321  24456777777776663

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.64  E-value=2.8e-07  Score=73.66  Aligned_cols=129  Identities=14%  Similarity=0.135  Sum_probs=78.8

Q ss_pred             cccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hh
Q 046682           33 VSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LV  110 (236)
Q Consensus        33 ~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~  110 (236)
                      ++.++.|++.+..-..+....+..+++|+.|+++++.+..+..        .....+++|+.|+++++ +++.++.  +.
T Consensus        31 ~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~  101 (220)
T 2v9t_B           31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP--------DAFQGLRSLNSLVLYGN-KITELPKSLFE  101 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT--------TTTTTCSSCCEEECCSS-CCCCCCTTTTT
T ss_pred             CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH--------HHhhCCcCCCEEECCCC-cCCccCHhHcc
Confidence            3577778877774333322346677788888887775554421        12345677888888776 5666643  35


Q ss_pred             cccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCC
Q 046682          111 FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGC  184 (236)
Q Consensus       111 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C  184 (236)
                      .+++|++|+++++ .+..+..            ..+..+++|++|++++. .++.+... ...+++|+.|.+.+.
T Consensus       102 ~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          102 GLFSLQLLLLNAN-KINCLRV------------DAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             TCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCC-CCCEeCH------------HHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence            6778888888765 3333321            24456777888888764 35555443 334677777777654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.63  E-value=3.4e-07  Score=77.26  Aligned_cols=147  Identities=13%  Similarity=0.152  Sum_probs=94.9

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhccc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQ  113 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp  113 (236)
                      ++|+.|+++++.-..+....+..+++|+.|+++++.+....+.      ......+++|+.|++.++ .+..++. ...+
T Consensus       121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~~~l~~L~~L~l~~n-~l~~l~~-~~~~  192 (330)
T 1xku_A          121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE------NGAFQGMKKLSYIRIADT-NITTIPQ-GLPP  192 (330)
T ss_dssp             TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC------TTGGGGCTTCCEEECCSS-CCCSCCS-SCCT
T ss_pred             ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcC------hhhccCCCCcCEEECCCC-ccccCCc-cccc
Confidence            6899999998854444323467889999999998844321111      112345788888888877 5666543 2237


Q ss_pred             CccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCC-CCCCCCCccEEeEeCCCCCCCcCC
Q 046682          114 ILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP-NPLPLPKLKKIQVRGCPQLKKLPV  192 (236)
Q Consensus       114 ~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~  192 (236)
                      +|++|+++++. ++.+..            ..+..+++|++|+++++. ++.+.. ....+++|++|++++| ++..+|.
T Consensus       193 ~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~  257 (330)
T 1xku_A          193 SLTELHLDGNK-ITKVDA------------ASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPG  257 (330)
T ss_dssp             TCSEEECTTSC-CCEECT------------GGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSCCT
T ss_pred             cCCEEECCCCc-CCccCH------------HHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCC-cCccCCh
Confidence            88888888763 444321            245567888888887653 444443 2345788888888888 6777776


Q ss_pred             CCCCCCCcceEE
Q 046682          193 NSSSVKERRVVI  204 (236)
Q Consensus       193 ~~~~~~~~l~~~  204 (236)
                      ..... ++|+.+
T Consensus       258 ~l~~l-~~L~~L  268 (330)
T 1xku_A          258 GLADH-KYIQVV  268 (330)
T ss_dssp             TTTTC-SSCCEE
T ss_pred             hhccC-CCcCEE
Confidence            54332 455544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.63  E-value=3.7e-07  Score=82.68  Aligned_cols=157  Identities=12%  Similarity=0.090  Sum_probs=84.9

Q ss_pred             cceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh----hh
Q 046682           35 ITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW----LV  110 (236)
Q Consensus        35 ~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~----l~  110 (236)
                      +++.|++.++.-...  .....+++|++|+++++.+....        +.....+++|+.|+++++ +++.++.    +.
T Consensus       332 ~L~~L~l~~n~~~~~--~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~  400 (562)
T 3a79_B          332 NIKMLSISDTPFIHM--VCPPSPSSFTFLNFTQNVFTDSV--------FQGCSTLKRLQTLILQRN-GLKNFFKVALMTK  400 (562)
T ss_dssp             CCSEEEEESSCCCCC--CCCSSCCCCCEEECCSSCCCTTT--------TTTCCSCSSCCEEECCSS-CCCBTTHHHHTTT
T ss_pred             cceEEEccCCCcccc--cCccCCCCceEEECCCCccccch--------hhhhcccCCCCEEECCCC-CcCCcccchhhhc
Confidence            466677766643222  11245667777777766333211        112244566666666665 4554321    34


Q ss_pred             cccCccEEeEecccccceecccc----ccccc---c--cccccccccc-CcccEEeccccccccccCCCCCCCCCccEEe
Q 046682          111 FVQILKQLRIVFCTEMEEIISVD----KLRDI---S--EIIGSEHNFF-AQLESLTIKWGRNLKSVYPNPLPLPKLKKIQ  180 (236)
Q Consensus       111 ~lp~L~~L~i~~C~~L~~i~~~~----~~~~~---~--~~~~~~~~~~-p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~  180 (236)
                      .+++|++|+++++.--..+....    .....   .  .........+ ++|++|+++++ +++.++.....+++|+.|+
T Consensus       401 ~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~  479 (562)
T 3a79_B          401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELN  479 (562)
T ss_dssp             TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEE
T ss_pred             CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEE
Confidence            56666666666553211121100    00000   0  0000111233 69999999887 7888887777899999999


Q ss_pred             EeCCCCCCCcCCCCCCCCCcceEE
Q 046682          181 VRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       181 i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      ++++ +++.+|.......++|+.+
T Consensus       480 L~~N-~l~~l~~~~~~~l~~L~~L  502 (562)
T 3a79_B          480 VASN-QLKSVPDGVFDRLTSLQYI  502 (562)
T ss_dssp             CCSS-CCCCCCTTSTTTCTTCCCE
T ss_pred             CCCC-CCCCCCHHHHhcCCCCCEE
Confidence            9997 7888987622222455544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.62  E-value=6.8e-08  Score=81.21  Aligned_cols=181  Identities=15%  Similarity=0.085  Sum_probs=86.5

Q ss_pred             cCcCCcceeEEeeehHHHHHHhcCC--cccccceEEEEeccCCCCccccchhhc-----ccCCceeecCCccceeeeccc
Q 046682            6 GLKHLNVLSWSFGSSLAVQKFLKYP--KLVSITQFVLVYHCKSAPFNLLHLAYM-----ENLQELDLEDINLEEMKIDST   78 (236)
Q Consensus         6 ~L~~L~~L~i~~~~~~~l~~l~~~~--~l~~~L~~L~l~~c~~~~~~~~~l~~l-----~~L~~L~i~~c~le~l~~~~~   78 (236)
                      .+.+|++|+++......  .+....  .-.++|+.|+++++.-... ...+..+     ++|++|+++++.+..+..   
T Consensus        93 ~l~~L~~L~L~~n~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~---  166 (312)
T 1wwl_A           93 GISGLQELTLENLEVTG--TAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSC---  166 (312)
T ss_dssp             TTSCCCEEEEEEEBCBS--CCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCT---
T ss_pred             CcCCccEEEccCCcccc--hhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchH---
Confidence            57788888877543221  111110  2236788888887754333 1334555     788888888775444321   


Q ss_pred             ccccccCccCCCCccEEEEecCCCCCcc---hhh--hcccCccEEeEecccccceecccc-------cccc--------c
Q 046682           79 EEVKKLFQSGFRSLDRVVISSCKKMKDL---TWL--VFVQILKQLRIVFCTEMEEIISVD-------KLRD--------I  138 (236)
Q Consensus        79 ~~~~~~~~~~l~~L~~L~i~~c~~l~~l---~~l--~~lp~L~~L~i~~C~~L~~i~~~~-------~~~~--------~  138 (236)
                           .....+++|+.|+++++.-...+   ..+  ..+++|++|+++++. +..+....       ....        .
T Consensus       167 -----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l  240 (312)
T 1wwl_A          167 -----EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSL  240 (312)
T ss_dssp             -----TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred             -----HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence                 12234566666666655321111   111  455666666665542 22110000       0000        0


Q ss_pred             cccc-cccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          139 SEII-GSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       139 ~~~~-~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      .... ......+++|++|+++++. ++.++....  ++|+.|+++++ +++.+|. ... .++|+.+
T Consensus       241 ~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~-l~~L~~L  301 (312)
T 1wwl_A          241 RDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYN-RLDRNPS-PDE-LPQVGNL  301 (312)
T ss_dssp             CSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSS-CCCSCCC-TTT-SCEEEEE
T ss_pred             CcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCC-CCCCChh-Hhh-CCCCCEE
Confidence            0000 0122335667777776542 444443322  66777777766 5666655 222 2455554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.62  E-value=7.9e-08  Score=86.08  Aligned_cols=40  Identities=28%  Similarity=0.242  Sum_probs=31.8

Q ss_pred             cccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCCC
Q 046682          145 EHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGCP  185 (236)
Q Consensus       145 ~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~  185 (236)
                      .+..+++|++|+++++ +++.++.. ...+++|+.|++.++|
T Consensus       439 ~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          439 QVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence            3458899999999986 67777765 4568889999988875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.62  E-value=1.1e-07  Score=79.99  Aligned_cols=176  Identities=11%  Similarity=0.037  Sum_probs=93.1

Q ss_pred             ccccCcCCcceeEEe-eehH-HHH-HHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccc
Q 046682            3 ELLGLKHLNVLSWSF-GSSL-AVQ-KFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTE   79 (236)
Q Consensus         3 eL~~L~~L~~L~i~~-~~~~-~l~-~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~   79 (236)
                      .+..+++|++|+++. .... .+. .+.    -.++|+.|+++++.-.......+..+++|++|+++++.+....     
T Consensus        71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~----~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-----  141 (313)
T 1ogq_A           71 SLANLPYLNFLYIGGINNLVGPIPPAIA----KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL-----  141 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESCCCGGGG----GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCC-----
T ss_pred             hHhCCCCCCeeeCCCCCcccccCChhHh----cCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcC-----
Confidence            467788999999873 2111 111 121    1268999999988543222245788899999999988443211     


Q ss_pred             cccccCccCCCCccEEEEecCCCCC-cch-hhhccc-CccEEeEecccccceeccccccccc----------cccccccc
Q 046682           80 EVKKLFQSGFRSLDRVVISSCKKMK-DLT-WLVFVQ-ILKQLRIVFCTEMEEIISVDKLRDI----------SEIIGSEH  146 (236)
Q Consensus        80 ~~~~~~~~~l~~L~~L~i~~c~~l~-~l~-~l~~lp-~L~~L~i~~C~~L~~i~~~~~~~~~----------~~~~~~~~  146 (236)
                         +.....+++|+.|+++++ .+. .++ .+..++ +|++|+++++.--..++..-.....          .......+
T Consensus       142 ---p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~  217 (313)
T 1ogq_A          142 ---PPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLF  217 (313)
T ss_dssp             ---CGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGC
T ss_pred             ---ChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHH
Confidence               122345778888888776 444 232 345555 7777777765322121110000000          00001234


Q ss_pred             cccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCC
Q 046682          147 NFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPV  192 (236)
Q Consensus       147 ~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~  192 (236)
                      ..+++|++|++++.. +.........+++|++|+++++.--..+|.
T Consensus       218 ~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  262 (313)
T 1ogq_A          218 GSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ  262 (313)
T ss_dssp             CTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCCEECCCG
T ss_pred             hcCCCCCEEECCCCc-eeeecCcccccCCCCEEECcCCcccCcCCh
Confidence            456677777776543 221111233456666666666633224443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.62  E-value=2.3e-07  Score=83.52  Aligned_cols=130  Identities=15%  Similarity=0.102  Sum_probs=68.9

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVF  111 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~  111 (236)
                      +.++.|+++++.-..+....+..+++|++|++++|.+..+..        .....+++|+.|+++++ .+..++.  +..
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~--------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~   96 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG--------DAFYSLGSLEHLDLSDN-HLSSLSSSWFGP   96 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT--------TTTTTCTTCCEEECTTS-CCCSCCHHHHTT
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh--------hhccccccCCEEECCCC-ccCccCHHHhcc
Confidence            567777777774332322345667777777777775544421        12344666777777666 4555432  456


Q ss_pred             ccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCC-CCCCCCCccEEeEeCC
Q 046682          112 VQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP-NPLPLPKLKKIQVRGC  184 (236)
Q Consensus       112 lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C  184 (236)
                      +++|++|+++++. ++.+...           ..+..+++|++|+++++..+..++. ....+++|++|++.++
T Consensus        97 l~~L~~L~Ls~n~-l~~~~~~-----------~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n  158 (549)
T 2z81_A           97 LSSLKYLNLMGNP-YQTLGVT-----------SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL  158 (549)
T ss_dssp             CTTCCEEECTTCC-CSSSCSS-----------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             CCCCcEEECCCCc-ccccchh-----------hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence            6667777666652 2211000           1233455566666655544444432 2334555555555555

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.62  E-value=4.9e-07  Score=72.64  Aligned_cols=123  Identities=16%  Similarity=0.140  Sum_probs=91.5

Q ss_pred             ccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceecccccc
Q 046682           58 ENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKL  135 (236)
Q Consensus        58 ~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~  135 (236)
                      ++|+.|+++++.+..+..        .....+++|+.|+++++ ++..++.  +..+++|++|+++++ .++.+..    
T Consensus        40 ~~L~~L~Ls~n~i~~~~~--------~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~----  105 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEP--------GVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPS----  105 (229)
T ss_dssp             TTCSEEECCSSCCCCCCT--------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT----
T ss_pred             CCCCEEEcCCCccCccCH--------HHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccCh----
Confidence            789999999996665422        22356899999999987 5777753  568999999999987 5555432    


Q ss_pred             ccccccccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          136 RDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       136 ~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                              ..+..+++|++|.+++. +++.++.....+++|+.|+++++ +++.+|........+|+.+
T Consensus       106 --------~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  164 (229)
T 3e6j_A          106 --------AVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHA  164 (229)
T ss_dssp             --------TTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             --------hHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEE
Confidence                    23467899999999875 57777776778999999999997 7888886433323555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.61  E-value=2.7e-08  Score=83.78  Aligned_cols=172  Identities=10%  Similarity=0.028  Sum_probs=98.6

Q ss_pred             ccccCcCCcceeEEeeehH-HHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccc-eeeeccccc
Q 046682            3 ELLGLKHLNVLSWSFGSSL-AVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLE-EMKIDSTEE   80 (236)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~-~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le-~l~~~~~~~   80 (236)
                      .+..+++|++|+++..... .+...+   .-.++|+.|+++++.-.......+..+++|++|++++|.+. .++......
T Consensus        96 ~l~~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  172 (313)
T 1ogq_A           96 AIAKLTQLHYLYITHTNVSGAIPDFL---SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF  172 (313)
T ss_dssp             GGGGCTTCSEEEEEEECCEEECCGGG---GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred             hHhcCCCCCEEECcCCeeCCcCCHHH---hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhh
Confidence            4678889999998754322 111111   11268888888887533222244677888888888877433 221100000


Q ss_pred             --------------c--cccCccCCCCccEEEEecCCCCCcch--hhhcccCccEEeEecccccceeccccccccccccc
Q 046682           81 --------------V--KKLFQSGFRSLDRVVISSCKKMKDLT--WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEII  142 (236)
Q Consensus        81 --------------~--~~~~~~~l~~L~~L~i~~c~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~  142 (236)
                                    .  .+.....++ |+.|+++++ .+....  .+..+++|++|+++++.- ...+            
T Consensus       173 ~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~------------  237 (313)
T 1ogq_A          173 SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKNSL-AFDL------------  237 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS-EEEECCGGGCCTTSCCSEEECCSSEE-CCBG------------
T ss_pred             hhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC-cccCcCCHHHhcCCCCCEEECCCCce-eeec------------
Confidence                          0  011223333 777777766 344321  345788999999987742 2221            


Q ss_pred             cccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCC
Q 046682          143 GSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVN  193 (236)
Q Consensus       143 ~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~  193 (236)
                       ..+..+++|++|+++++.--..++.....+++|+.|++++++--..+|..
T Consensus       238 -~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          238 -GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             -GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             -CcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence             12446688888888876432244444456788888888887443356654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.61  E-value=2.5e-07  Score=81.27  Aligned_cols=131  Identities=15%  Similarity=0.107  Sum_probs=81.0

Q ss_pred             cceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch--hhhcc
Q 046682           35 ITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT--WLVFV  112 (236)
Q Consensus        35 ~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--~l~~l  112 (236)
                      +|+.|++.++.-.......+..+++|+.|++++|.+..+..        .....+++|+.|+++++ .+..+.  .+..+
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l  346 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD--------NAFWGLTHLLKLNLSQN-FLGSIDSRMFENL  346 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT--------TTTTTCTTCCEEECCSS-CCCEECGGGGTTC
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh--------hHhcCcccCCEEECCCC-ccCCcChhHhcCc
Confidence            44444444443222211234556666666666664443321        12345778888888777 555542  34567


Q ss_pred             cCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCCC-CCCCCccEEeEeCCCCCC
Q 046682          113 QILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNP-LPLPKLKKIQVRGCPQLK  188 (236)
Q Consensus       113 p~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~  188 (236)
                      ++|++|+++++. +..+..            ..+..+++|++|++++. +++.++... ..+++|+.|++.+++=-.
T Consensus       347 ~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          347 DKLEVLDLSYNH-IRALGD------------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             TTCCEEECCSSC-CCEECT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccCCEEECCCCc-ccccCh------------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCccc
Confidence            888888887763 443321            35567899999999984 577776543 468999999999875433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.60  E-value=4.5e-08  Score=82.48  Aligned_cols=175  Identities=13%  Similarity=0.104  Sum_probs=111.1

Q ss_pred             ccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeeccccccc
Q 046682            3 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVK   82 (236)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~   82 (236)
                      .+..+.+|+.|+++......+.   .... .++|+.|+++++.-     ..+...++|+.|.+++|.+..+..       
T Consensus        53 ~~~~l~~L~~L~Ls~n~l~~~~---~~~~-l~~L~~L~Ls~n~l-----~~l~~~~~L~~L~l~~n~l~~~~~-------  116 (317)
T 3o53_A           53 DLAPFTKLELLNLSSNVLYETL---DLES-LSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSC-------  116 (317)
T ss_dssp             HHTTCTTCCEEECTTSCCEEEE---EETT-CTTCCEEECCSSEE-----EEEEECTTCCEEECCSSCCSEEEE-------
T ss_pred             HhhCCCcCCEEECCCCcCCcch---hhhh-cCCCCEEECcCCcc-----ccccCCCCcCEEECCCCccCCcCc-------
Confidence            3567888888887643221111   1122 26899999998842     334455899999999996665532       


Q ss_pred             ccCccCCCCccEEEEecCCCCCcch--hhhcccCccEEeEecccccceecccc-----cccc--------cccccccccc
Q 046682           83 KLFQSGFRSLDRVVISSCKKMKDLT--WLVFVQILKQLRIVFCTEMEEIISVD-----KLRD--------ISEIIGSEHN  147 (236)
Q Consensus        83 ~~~~~~l~~L~~L~i~~c~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~-----~~~~--------~~~~~~~~~~  147 (236)
                          ..+++|+.|+++++ ++..+.  .+..+++|++|+++++. +..+....     ....        ....  ....
T Consensus       117 ----~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~  188 (317)
T 3o53_A          117 ----SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQV  188 (317)
T ss_dssp             ----CCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCC
T ss_pred             ----cccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCccc--cccc
Confidence                23788999999988 577664  35678999999998863 44432110     0000        0001  1233


Q ss_pred             ccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          148 FFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       148 ~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      .+++|++|+++++ +++.++.....+++|+.|+++++ +++.+|...... ++|+.+
T Consensus       189 ~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l-~~L~~L  242 (317)
T 3o53_A          189 VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFS-QNLEHF  242 (317)
T ss_dssp             CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCC-TTCCEE
T ss_pred             ccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhhHhhcC-CCCCEE
Confidence            4778888888765 45555555556788999999888 777887654332 556655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.57  E-value=1.2e-07  Score=87.50  Aligned_cols=185  Identities=14%  Similarity=0.087  Sum_probs=102.2

Q ss_pred             cCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCC-C--Cccccchhhc------ccCCceeecCCccceeeec
Q 046682            6 GLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKS-A--PFNLLHLAYM------ENLQELDLEDINLEEMKID   76 (236)
Q Consensus         6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~-~--~~~~~~l~~l------~~L~~L~i~~c~le~l~~~   76 (236)
                      ++++|++|++......  ..+.....-.++|+.|+++++.. .  .+ ...+..+      ++|+.|++++|.+..++..
T Consensus       247 ~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~~l~~~~l-p~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~  323 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNL--TKLPTFLKALPEMQLINVACNRGISGEQL-KDDWQALADAPVGEKIQIIYIGYNNLKTFPVE  323 (636)
T ss_dssp             GCTTCCEEEEECCTTC--SSCCTTTTTCSSCCEEECTTCTTSCHHHH-HHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred             ccCCCCEEEecCCcCC--ccChHHHhcCCCCCEEECcCCCCCccccc-hHHHHhhhccccCCCCCEEECCCCcCCccCch
Confidence            7888999998754311  11112222236888999988852 2  12 1234444      8899999988855444210


Q ss_pred             ccccccccCccCCCCccEEEEecCCCCC-cchhhhcccCccEEeEecccccceeccccc---c-cc--------cccccc
Q 046682           77 STEEVKKLFQSGFRSLDRVVISSCKKMK-DLTWLVFVQILKQLRIVFCTEMEEIISVDK---L-RD--------ISEIIG  143 (236)
Q Consensus        77 ~~~~~~~~~~~~l~~L~~L~i~~c~~l~-~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~---~-~~--------~~~~~~  143 (236)
                             .....+++|+.|+++++ .+. .++.+..+++|++|+++++. +..++..-.   . ..        ..+.. 
T Consensus       324 -------~~l~~l~~L~~L~L~~N-~l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp-  393 (636)
T 4eco_A          324 -------TSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIP-  393 (636)
T ss_dssp             -------HHHTTCTTCCEEECCSC-CCEEECCCCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCC-
T ss_pred             -------hhhccCCCCCEEeCcCC-cCccchhhhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccc-
Confidence                   02345677777777776 455 45545566777777776653 222221100   0 00        00000 


Q ss_pred             ccc--cccCcccEEeccccccccccCCCC-------CCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          144 SEH--NFFAQLESLTIKWGRNLKSVYPNP-------LPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       144 ~~~--~~~p~L~~L~l~~~~~L~~i~~~~-------~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      ..+  ..+++|++|+++++.--..++...       ..+++|+.|.++++ ++..+|.......++|+.+
T Consensus       394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L  462 (636)
T 4eco_A          394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSI  462 (636)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEE
T ss_pred             hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEE
Confidence            111  234589999998765322222222       25679999999998 6778886432222445544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.57  E-value=1.7e-07  Score=85.28  Aligned_cols=135  Identities=13%  Similarity=0.151  Sum_probs=92.4

Q ss_pred             ccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch--hh
Q 046682           32 LVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT--WL  109 (236)
Q Consensus        32 l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--~l  109 (236)
                      ++..++.|++++..-..+...++.++++|+.|++++|.++.+..+        ....+++|+.|+++++ +++.++  .+
T Consensus        50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~--------~f~~L~~L~~L~Ls~N-~l~~l~~~~f  120 (635)
T 4g8a_A           50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG--------AYQSLSHLSTLILTGN-PIQSLALGAF  120 (635)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT--------TTTTCTTCCEEECTTC-CCCEECGGGG
T ss_pred             CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChh--------HhcCCCCCCEEEccCC-cCCCCCHHHh
Confidence            456889999987744444334578889999999998877766321        2346788999999887 577765  35


Q ss_pred             hcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccC--CCCCCCCCccEEeEeCCCCC
Q 046682          110 VFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVY--PNPLPLPKLKKIQVRGCPQL  187 (236)
Q Consensus       110 ~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~--~~~~~~p~L~~L~i~~C~~L  187 (236)
                      ..+++|++|+++++ +++.+..            ..+..+++|++|++++.. ++.+.  .....+++|++|.+.++ ++
T Consensus       121 ~~L~~L~~L~Ls~N-~l~~l~~------------~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~l  185 (635)
T 4g8a_A          121 SGLSSLQKLVAVET-NLASLEN------------FPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KI  185 (635)
T ss_dssp             TTCTTCCEEECTTS-CCCCSTT------------CCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS-CC
T ss_pred             cCCCCCCEEECCCC-cCCCCCh------------hhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCc-cc
Confidence            67889999999887 3544431            245678889999887653 33332  22345788888888876 44


Q ss_pred             CCc
Q 046682          188 KKL  190 (236)
Q Consensus       188 ~~l  190 (236)
                      +.+
T Consensus       186 ~~~  188 (635)
T 4g8a_A          186 QSI  188 (635)
T ss_dssp             CEE
T ss_pred             ccc
Confidence            444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.57  E-value=1e-07  Score=86.00  Aligned_cols=183  Identities=15%  Similarity=0.049  Sum_probs=97.9

Q ss_pred             ccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeeccccccccc
Q 046682            5 LGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKL   84 (236)
Q Consensus         5 ~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~   84 (236)
                      ..+ +|+.|++......   .+..  ...++|+.|.+.++.....  .....+++|+.|++++|.+..+...      +.
T Consensus       302 ~~~-~L~~L~l~~n~~~---~l~~--~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~------~~  367 (570)
T 2z63_A          302 YNF-GWQHLELVNCKFG---QFPT--LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCC------SQ  367 (570)
T ss_dssp             SCC-CCSEEEEESCBCS---SCCB--CBCSSCCEEEEESCBSCCB--CCCCBCTTCCEEECCSSCCBEEEEE------EH
T ss_pred             ccC-CccEEeeccCccc---ccCc--ccccccCEEeCcCCccccc--cccccCCCCCEEeCcCCccCccccc------cc
Confidence            345 7888888755433   2222  1237899999999865322  2226789999999998854433200      00


Q ss_pred             CccCCCCccEEEEecCCCCCcch-hhhcccCccEEeEecccccceeccc-----ccccc--------ccccccccccccC
Q 046682           85 FQSGFRSLDRVVISSCKKMKDLT-WLVFVQILKQLRIVFCTEMEEIISV-----DKLRD--------ISEIIGSEHNFFA  150 (236)
Q Consensus        85 ~~~~l~~L~~L~i~~c~~l~~l~-~l~~lp~L~~L~i~~C~~L~~i~~~-----~~~~~--------~~~~~~~~~~~~p  150 (236)
                      ....+++|+.|++++| .+..++ .+..+++|++|++++|.- ..+...     .....        ........+..++
T Consensus       368 ~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  445 (570)
T 2z63_A          368 SDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS  445 (570)
T ss_dssp             HHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEE-ESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred             cccccCccCEEECCCC-ccccccccccccCCCCEEEccCCcc-ccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC
Confidence            1123455555555554 222221 133444455554444321 111000     00000        0000002456788


Q ss_pred             cccEEeccccccc-cccCCCCCCCCCccEEeEeCCCCCCCc-CCCCCCCCCcceEEe
Q 046682          151 QLESLTIKWGRNL-KSVYPNPLPLPKLKKIQVRGCPQLKKL-PVNSSSVKERRVVIE  205 (236)
Q Consensus       151 ~L~~L~l~~~~~L-~~i~~~~~~~p~L~~L~i~~C~~L~~l-p~~~~~~~~~l~~~~  205 (236)
                      +|++|++.++.-. ..++.....+++|+.|++++| +++.+ |..... .++|+.+.
T Consensus       446 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~  500 (570)
T 2z63_A          446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNS-LSSLQVLN  500 (570)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTT-CTTCCEEE
T ss_pred             cCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhc-ccCCCEEe
Confidence            9999999887643 245555667899999999998 45555 433322 25566553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.56  E-value=9.4e-08  Score=85.49  Aligned_cols=185  Identities=13%  Similarity=0.087  Sum_probs=103.8

Q ss_pred             CcCCcceeEEeeehHHHH-HHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeec---------
Q 046682            7 LKHLNVLSWSFGSSLAVQ-KFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKID---------   76 (236)
Q Consensus         7 L~~L~~L~i~~~~~~~l~-~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~---------   76 (236)
                      ..+|+.|+++......+. ..+  . -.++|+.|+++++.-...  ..+..+++|+.|++++|.+..+...         
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~--~-~l~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~  107 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADL--A-PFTKLELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAA  107 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGG--T-TCTTCCEEECTTSCCEEE--EECTTCTTCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred             CCCccEEEeeCCcCCCCCHHHH--h-CCCCCCEEEeeCCCCCCC--cccccCCCCCEEEecCCcCCCCCCCCCcCEEECc
Confidence            347888887754322221 111  1 126889999988854322  3367788888888888744433211         


Q ss_pred             ccccccccCccCCCCccEEEEecCCCCCcch--hhhcccCccEEeEecccccceeccccc-----ccc--------cccc
Q 046682           77 STEEVKKLFQSGFRSLDRVVISSCKKMKDLT--WLVFVQILKQLRIVFCTEMEEIISVDK-----LRD--------ISEI  141 (236)
Q Consensus        77 ~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~-----~~~--------~~~~  141 (236)
                      ...-.+. ....+++|+.|+++++ .+..+.  .+..+++|++|+++++. +..++...-     ...        ....
T Consensus       108 ~N~l~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRV-SCSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCE-EECCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCC-CccccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCccccc
Confidence            1100001 1234677888888776 465543  24567788888887653 333221100     000        0000


Q ss_pred             ccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          142 IGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       142 ~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                        .....+++|++|+++++ .+..++.....+++|+.|+++++ ++..+|...... ++|+.+
T Consensus       185 --~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l-~~L~~L  242 (487)
T 3oja_A          185 --KGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFS-QNLEHF  242 (487)
T ss_dssp             --ECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCC-TTCCEE
T ss_pred             --cccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cCcccchhhccC-CCCCEE
Confidence              12335778888888765 45666555556788999999886 577777664332 555555

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.55  E-value=8e-07  Score=70.98  Aligned_cols=130  Identities=10%  Similarity=0.133  Sum_probs=85.6

Q ss_pred             cccceEEEEeccCCCCccc-cchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--h
Q 046682           33 VSITQFVLVYHCKSAPFNL-LHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--L  109 (236)
Q Consensus        33 ~~~L~~L~l~~c~~~~~~~-~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l  109 (236)
                      +..++.|++++..-..+.. ..+..+++|+.|+++++.+..+..        .....+++|+.|+++++ .+..++.  +
T Consensus        31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~  101 (220)
T 2v70_A           31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE--------GAFEGASGVNEILLTSN-RLENVQHKMF  101 (220)
T ss_dssp             CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT--------TTTTTCTTCCEEECCSS-CCCCCCGGGG
T ss_pred             CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH--------HHhCCCCCCCEEECCCC-ccCccCHhHh
Confidence            3567888888775333311 236778888888888886665532        12356788888888877 5666643  5


Q ss_pred             hcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCC-CCCCCCCccEEeEeCCC
Q 046682          110 VFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP-NPLPLPKLKKIQVRGCP  185 (236)
Q Consensus       110 ~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~  185 (236)
                      ..+++|++|+++++. +..+..            ..+..+++|++|++++. .++.+.. ....+++|+.|++.+.+
T Consensus       102 ~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          102 KGLESLKTLMLRSNR-ITCVGN------------DSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TTCSSCCEEECTTSC-CCCBCT------------TSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             cCCcCCCEEECCCCc-CCeECH------------hHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence            678888888888763 433321            24557788888888764 4555533 34457888888877653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.54  E-value=3.7e-07  Score=78.29  Aligned_cols=137  Identities=21%  Similarity=0.187  Sum_probs=97.8

Q ss_pred             ccccceEEEEeccCCCCccccchh-hcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--
Q 046682           32 LVSITQFVLVYHCKSAPFNLLHLA-YMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--  108 (236)
Q Consensus        32 l~~~L~~L~l~~c~~~~~~~~~l~-~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--  108 (236)
                      ++..++.|++++..-..+....+. .+++|+.|+++++.+..+..+        ....+++|+.|+++++ +++.++.  
T Consensus        37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~--------~~~~l~~L~~L~Ls~N-~l~~~~~~~  107 (361)
T 2xot_A           37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE--------AFVPVPNLRYLDLSSN-HLHTLDEFL  107 (361)
T ss_dssp             CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTT--------TTTTCTTCCEEECCSS-CCCEECTTT
T ss_pred             CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChh--------hccCCCCCCEEECCCC-cCCcCCHHH
Confidence            346788999998854333223344 789999999999877666321        2356889999999887 5777653  


Q ss_pred             hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCCC----CCCCCccEEeEeCC
Q 046682          109 LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNP----LPLPKLKKIQVRGC  184 (236)
Q Consensus       109 l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~----~~~p~L~~L~i~~C  184 (236)
                      +..+++|++|+++++. +..+..            ..+..+++|+.|++++. .++.++...    ..+++|+.|++++.
T Consensus       108 ~~~l~~L~~L~L~~N~-i~~~~~------------~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A          108 FSDLQALEVLLLYNNH-IVVVDR------------NAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             TTTCTTCCEEECCSSC-CCEECT------------TTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS
T ss_pred             hCCCcCCCEEECCCCc-ccEECH------------HHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC
Confidence            5678999999998763 444421            24567899999999874 466665433    45899999999997


Q ss_pred             CCCCCcCC
Q 046682          185 PQLKKLPV  192 (236)
Q Consensus       185 ~~L~~lp~  192 (236)
                       +++.+|.
T Consensus       174 -~l~~l~~  180 (361)
T 2xot_A          174 -KLKKLPL  180 (361)
T ss_dssp             -CCCCCCH
T ss_pred             -CCCccCH
Confidence             6777774

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.53  E-value=3e-07  Score=75.65  Aligned_cols=83  Identities=14%  Similarity=0.122  Sum_probs=58.0

Q ss_pred             ccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch--hh
Q 046682           32 LVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT--WL  109 (236)
Q Consensus        32 l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--~l  109 (236)
                      +++.++.|+++++.-..+....+.++++|+.|++++|.+..+...        ....+++|+.|+++++ .+..++  .+
T Consensus        26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~L~~n-~l~~~~~~~~   96 (276)
T 2z62_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG--------AYQSLSHLSTLILTGN-PIQSLALGAF   96 (276)
T ss_dssp             SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTT--------TTTTCTTCCEEECTTC-CCCEECTTTT
T ss_pred             CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHH--------HccCCcCCCEEECCCC-ccCccChhhh
Confidence            346899999998854444323578899999999999966655321        2345778888888776 455543  35


Q ss_pred             hcccCccEEeEecc
Q 046682          110 VFVQILKQLRIVFC  123 (236)
Q Consensus       110 ~~lp~L~~L~i~~C  123 (236)
                      ..+++|++|++.++
T Consensus        97 ~~l~~L~~L~l~~n  110 (276)
T 2z62_A           97 SGLSSLQKLVAVET  110 (276)
T ss_dssp             TTCTTCCEEECTTS
T ss_pred             cCCccccEEECCCC
Confidence            56788888888765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.53  E-value=7.5e-08  Score=89.01  Aligned_cols=164  Identities=17%  Similarity=0.195  Sum_probs=96.4

Q ss_pred             ccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCC--CccccchhhcccCCceeecCCccceeeeccccc
Q 046682            3 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSA--PFNLLHLAYMENLQELDLEDINLEEMKIDSTEE   80 (236)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~--~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~   80 (236)
                      .+.++.+|+.|+++......+..  ......+.|+.|.+.++.-.  ......+..+++|+.|++++|.+..+..+    
T Consensus       425 ~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~----  498 (680)
T 1ziw_A          425 EWRGLENIFEIYLSYNKYLQLTR--NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD----  498 (680)
T ss_dssp             GGTTCTTCCEEECCSCSEEECCT--TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT----
T ss_pred             cccCcccccEEecCCCCcceeCh--hhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh----
Confidence            45677888888876433111100  01112368888999887532  12123467788899999988865544221    


Q ss_pred             ccccCccCCCCccEEEEecCCCCCcch----------hhhcccCccEEeEecccccceeccccccccccccccccccccC
Q 046682           81 VKKLFQSGFRSLDRVVISSCKKMKDLT----------WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFA  150 (236)
Q Consensus        81 ~~~~~~~~l~~L~~L~i~~c~~l~~l~----------~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p  150 (236)
                          ....+++|+.|+++++ .+..+.          .+..+++|++|+++++ .++.+..            ..+..++
T Consensus       499 ----~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~------------~~~~~l~  560 (680)
T 1ziw_A          499 ----MLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV------------EVFKDLF  560 (680)
T ss_dssp             ----TTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCT
T ss_pred             ----hhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCH------------HHccccc
Confidence                2345778888888776 455431          1456778888888765 3443331            1344566


Q ss_pred             cccEEeccccccccccCCCC-CCCCCccEEeEeCCCCCCCcCC
Q 046682          151 QLESLTIKWGRNLKSVYPNP-LPLPKLKKIQVRGCPQLKKLPV  192 (236)
Q Consensus       151 ~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~~lp~  192 (236)
                      +|+.|++++ .+++.++... ..+++|+.|+++++ +++.+|.
T Consensus       561 ~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~  601 (680)
T 1ziw_A          561 ELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEK  601 (680)
T ss_dssp             TCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCH
T ss_pred             CcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccCh
Confidence            777777754 3455555443 34667777777776 5555543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.53  E-value=3.4e-07  Score=76.92  Aligned_cols=161  Identities=16%  Similarity=0.069  Sum_probs=94.7

Q ss_pred             ccceEEEEeccCCCCccccch--hhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch--hh
Q 046682           34 SITQFVLVYHCKSAPFNLLHL--AYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT--WL  109 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l--~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--~l  109 (236)
                      ++|+.|+++++.-.......+  ..+++|++|+++++.+..+. .....   .....+++|+.|+++++ .+..++  .+
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~---l~~~~~~~L~~L~L~~N-~l~~~~~~~~  169 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAE---LQQWLKPGLKVLSIAQA-HSLNFSCEQV  169 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHH---HHTTCCTTCCEEEEESC-SCCCCCTTTC
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHH---HHHhhcCCCcEEEeeCC-CCccchHHHh
Confidence            689999999996432211233  78899999999999655441 11000   00112389999999998 577664  35


Q ss_pred             hcccCccEEeEeccccccee--c-----cccccccc---c--ccc------cccccccCcccEEeccccccccccCC--C
Q 046682          110 VFVQILKQLRIVFCTEMEEI--I-----SVDKLRDI---S--EII------GSEHNFFAQLESLTIKWGRNLKSVYP--N  169 (236)
Q Consensus       110 ~~lp~L~~L~i~~C~~L~~i--~-----~~~~~~~~---~--~~~------~~~~~~~p~L~~L~l~~~~~L~~i~~--~  169 (236)
                      ..+++|++|+++++.-...+  +     ........   .  .+.      ......+++|++|++++.. +.....  .
T Consensus       170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~  248 (312)
T 1wwl_A          170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPS  248 (312)
T ss_dssp             CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSC
T ss_pred             ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhh
Confidence            68999999999988632211  1     00000000   0  000      0011244788888887653 433321  1


Q ss_pred             CCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          170 PLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       170 ~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      ...+++|+.|+++++ +++.+|....   .+|+.+
T Consensus       249 ~~~l~~L~~L~Ls~N-~l~~ip~~~~---~~L~~L  279 (312)
T 1wwl_A          249 CDWPSQLNSLNLSFT-GLKQVPKGLP---AKLSVL  279 (312)
T ss_dssp             CCCCTTCCEEECTTS-CCSSCCSSCC---SEEEEE
T ss_pred             hhhcCCCCEEECCCC-ccChhhhhcc---CCceEE
Confidence            234688999999888 5777776543   455554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.52  E-value=5e-07  Score=77.15  Aligned_cols=55  Identities=24%  Similarity=0.167  Sum_probs=40.8

Q ss_pred             cccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          145 EHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       145 ~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      .+..+++|++|++++. +++.++.  ..|.+|+.|.+.+|.+++.+|.-..  ..+|+..
T Consensus       197 ~f~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~--l~~L~~l  251 (350)
T 4ay9_X          197 VFHGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNLKKLPTLEK--LVALMEA  251 (350)
T ss_dssp             TTTTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTT--CCSCCEE
T ss_pred             HhccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCCcCcCCCchh--CcChhhC
Confidence            3467789999999876 5777764  3478999999999999999995322  2555555

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.52  E-value=8.3e-07  Score=74.97  Aligned_cols=56  Identities=14%  Similarity=0.277  Sum_probs=35.6

Q ss_pred             ccccCcccEEeccccccccccCC-CCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          146 HNFFAQLESLTIKWGRNLKSVYP-NPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       146 ~~~~p~L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      +..+++|++|+++++ .++.+.. ....+++|+.|+++++ ++..+|...... ++|+.+
T Consensus       213 l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l-~~L~~L  269 (332)
T 2ft3_A          213 LLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDL-KLLQVV  269 (332)
T ss_dssp             STTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGC-TTCCEE
T ss_pred             hcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcC-ccCCEE
Confidence            445667777777654 3444433 2345789999999988 677888764332 555555

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.52  E-value=1.6e-06  Score=68.17  Aligned_cols=124  Identities=19%  Similarity=0.202  Sum_probs=88.4

Q ss_pred             cccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccc
Q 046682           57 MENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDK  134 (236)
Q Consensus        57 l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~  134 (236)
                      .++|++|+++++.+..+...        ....+++|+.|++.++ +++.++.  +..+++|++|+++++ .++.+..   
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~---   93 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNG--------VFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPN---   93 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTT--------TTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT---
T ss_pred             CCCCcEEEcCCCccCcCChh--------hhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCH---
Confidence            46899999999966554221        2356899999999987 6777653  467899999999987 3444331   


Q ss_pred             cccccccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          135 LRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       135 ~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                               ..+..+++|++|++++. .++.+... ...+++|+.|+++++ +++.+|........+|+.+
T Consensus        94 ---------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L  153 (208)
T 2o6s_A           94 ---------GVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYI  153 (208)
T ss_dssp             ---------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred             ---------hHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEE
Confidence                     23567899999999875 46666654 346899999999997 6777776532223555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.51  E-value=1.4e-07  Score=88.83  Aligned_cols=146  Identities=11%  Similarity=-0.053  Sum_probs=73.2

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeeccccc--------------c--cccCccCCCCccEEEE
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEE--------------V--KKLFQSGFRSLDRVVI   97 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~--------------~--~~~~~~~l~~L~~L~i   97 (236)
                      ++|+.|++.+|.-.......+..+++|+.|++++|.+..........              .  .+.....+++|+.|++
T Consensus       394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  473 (768)
T 3rgz_A          394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL  473 (768)
T ss_dssp             CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence            56777777777432121234566777777777776332111000000              0  0111223444444444


Q ss_pred             ecCCCCCc-ch-hhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCCCCCCCC
Q 046682           98 SSCKKMKD-LT-WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPK  175 (236)
Q Consensus        98 ~~c~~l~~-l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~  175 (236)
                      .++ .+.. ++ .+..+++|++|++++|.-...++             ..+..+++|++|+++++.-...++.....+++
T Consensus       474 ~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-------------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  539 (768)
T 3rgz_A          474 DFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEIP-------------KWIGRLENLAILKLSNNSFSGNIPAELGDCRS  539 (768)
T ss_dssp             CSS-CCCSCCCGGGGGCTTCCEEECCSSCCCSCCC-------------GGGGGCTTCCEEECCSSCCEEECCGGGGGCTT
T ss_pred             cCC-cccCcCCHHHhcCCCCCEEEccCCccCCcCC-------------hHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence            444 2221 11 23344445555554443111111             24556778888888777544455555556788


Q ss_pred             ccEEeEeCCCCCCCcCCC
Q 046682          176 LKKIQVRGCPQLKKLPVN  193 (236)
Q Consensus       176 L~~L~i~~C~~L~~lp~~  193 (236)
                      |+.|++.+|+--..+|..
T Consensus       540 L~~L~Ls~N~l~g~ip~~  557 (768)
T 3rgz_A          540 LIWLDLNTNLFNGTIPAA  557 (768)
T ss_dssp             CCEEECCSSEEESBCCGG
T ss_pred             CCEEECCCCccCCcCChH
Confidence            888888877655556643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.50  E-value=2.5e-07  Score=70.42  Aligned_cols=112  Identities=16%  Similarity=0.188  Sum_probs=82.7

Q ss_pred             hcccCCceeecCCccc--eeeecccccccccCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccc
Q 046682           56 YMENLQELDLEDINLE--EMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVD  133 (236)
Q Consensus        56 ~l~~L~~L~i~~c~le--~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~  133 (236)
                      ..++|+.|++++|.+.  .+.         .....+++|+.|++.+| .++.+..+..+++|++|+++++. +...+.  
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~---------~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--   88 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIE---------GLTAEFVNLEFLSLINV-GLISVSNLPKLPKLKKLELSENR-IFGGLD--   88 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCS---------SCCGGGGGCCEEEEESS-CCCCCSSCCCCSSCCEEEEESCC-CCSCCC--
T ss_pred             CcccCCEEECCCCCCChhhHH---------HHHHhCCCCCEEeCcCC-CCCChhhhccCCCCCEEECcCCc-CchHHH--
Confidence            3478999999999654  442         12356899999999998 48877667789999999999874 333221  


Q ss_pred             ccccccccccccccccCcccEEeccccccccccC--CCCCCCCCccEEeEeCCCCCCCcCC
Q 046682          134 KLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVY--PNPLPLPKLKKIQVRGCPQLKKLPV  192 (236)
Q Consensus       134 ~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~--~~~~~~p~L~~L~i~~C~~L~~lp~  192 (236)
                                .....+++|++|+++++ .++.++  .....+++|+.|+++++ .+..+|.
T Consensus        89 ----------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~  137 (168)
T 2ell_A           89 ----------MLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLND  137 (168)
T ss_dssp             ----------HHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTT
T ss_pred             ----------HHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHH
Confidence                      12345899999999987 566654  23456899999999998 5666665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.50  E-value=2.7e-07  Score=81.83  Aligned_cols=136  Identities=16%  Similarity=0.191  Sum_probs=73.0

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhccc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQ  113 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp  113 (236)
                      ++|+.|+++++.-..+  +.+..+++|++|++++|.++.+.            ..+++|+.|+++++ .+..++.+..++
T Consensus       131 ~~L~~L~L~~n~l~~l--p~~~~l~~L~~L~l~~N~l~~lp------------~~~~~L~~L~L~~n-~l~~l~~~~~l~  195 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKL--PELQNSSFLKIIDVDNNSLKKLP------------DLPPSLEFIAAGNN-QLEELPELQNLP  195 (454)
T ss_dssp             TTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSCCC------------CCCTTCCEEECCSS-CCSSCCCCTTCT
T ss_pred             CCCCEEECcCCCCCCC--cccCCCCCCCEEECCCCcCcccC------------CCcccccEEECcCC-cCCcCccccCCC
Confidence            4566666665533333  34566666677766666443321            11346777777766 566665566677


Q ss_pred             CccEEeEecccccceeccccccc--------cccccccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCC
Q 046682          114 ILKQLRIVFCTEMEEIISVDKLR--------DISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCP  185 (236)
Q Consensus       114 ~L~~L~i~~C~~L~~i~~~~~~~--------~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~  185 (236)
                      +|++|+++++. +..+.......        ...+.  ..+..+++|++|+++++ .++.++.   .+++|+.|++.+| 
T Consensus       196 ~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~l--p~~~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N-  267 (454)
T 1jl5_A          196 FLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEEL--PELQNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDN-  267 (454)
T ss_dssp             TCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSS-
T ss_pred             CCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCcc--cccCCCCCCCEEECCCC-cCCcccc---cccccCEEECCCC-
Confidence            77777776653 22221100000        00011  23456778888888764 3444432   2467777777776 


Q ss_pred             CCCCcCC
Q 046682          186 QLKKLPV  192 (236)
Q Consensus       186 ~L~~lp~  192 (236)
                      ++..+|.
T Consensus       268 ~l~~l~~  274 (454)
T 1jl5_A          268 YLTDLPE  274 (454)
T ss_dssp             CCSCCCC
T ss_pred             cccccCc
Confidence            3555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.46  E-value=6.7e-07  Score=80.98  Aligned_cols=80  Identities=20%  Similarity=0.165  Sum_probs=48.8

Q ss_pred             CCCccEEEEecCCCCCcchhhhcc-cCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccC
Q 046682           89 FRSLDRVVISSCKKMKDLTWLVFV-QILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVY  167 (236)
Q Consensus        89 l~~L~~L~i~~c~~l~~l~~l~~l-p~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~  167 (236)
                      +++|+.|+++++ .+..... ..+ ++|++|+++++ .++.+.             ..+..+++|++|++++. +++.++
T Consensus       427 l~~L~~L~l~~n-~l~~~~~-~~l~~~L~~L~L~~N-~l~~ip-------------~~~~~l~~L~~L~L~~N-~l~~l~  489 (562)
T 3a79_B          427 AESILVLNLSSN-MLTGSVF-RCLPPKVKVLDLHNN-RIMSIP-------------KDVTHLQALQELNVASN-QLKSVP  489 (562)
T ss_dssp             CTTCCEEECCSS-CCCGGGG-SSCCTTCSEEECCSS-CCCCCC-------------TTTTSSCCCSEEECCSS-CCCCCC
T ss_pred             cccCCEEECCCC-CCCcchh-hhhcCcCCEEECCCC-cCcccC-------------hhhcCCCCCCEEECCCC-CCCCCC
Confidence            455555555554 2322111 112 45666666555 344332             23447899999999875 577777


Q ss_pred             CC-CCCCCCccEEeEeCCC
Q 046682          168 PN-PLPLPKLKKIQVRGCP  185 (236)
Q Consensus       168 ~~-~~~~p~L~~L~i~~C~  185 (236)
                      .. ...+++|+.|++.+.|
T Consensus       490 ~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          490 DGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             TTSTTTCTTCCCEECCSCC
T ss_pred             HHHHhcCCCCCEEEecCCC
Confidence            65 5568899999988875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.45  E-value=1.6e-07  Score=72.72  Aligned_cols=66  Identities=15%  Similarity=0.279  Sum_probs=34.8

Q ss_pred             CCCCccEEEEecCCCCCcc--hhhhc----ccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682           88 GFRSLDRVVISSCKKMKDL--TWLVF----VQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR  161 (236)
Q Consensus        88 ~l~~L~~L~i~~c~~l~~l--~~l~~----lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  161 (236)
                      .+++|++|++++|..+++-  ..+..    .++|++|+|++|.++++-.-            ..+..+++|++|.|++|+
T Consensus        83 ~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl------------~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A           83 GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI------------IALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH------------HHGGGCTTCCEEEEESCT
T ss_pred             CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH------------HHHhcCCCCCEEECCCCC
Confidence            4566666666666655542  12222    23566666666665543210            123345666666666666


Q ss_pred             cccc
Q 046682          162 NLKS  165 (236)
Q Consensus       162 ~L~~  165 (236)
                      +++.
T Consensus       151 ~Itd  154 (176)
T 3e4g_A          151 GVKE  154 (176)
T ss_dssp             TCCC
T ss_pred             CCCc
Confidence            5554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.44  E-value=9.1e-07  Score=81.73  Aligned_cols=90  Identities=13%  Similarity=0.172  Sum_probs=48.7

Q ss_pred             cCCCCccEEEEecCCCCCcch--hhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEecccccccc
Q 046682           87 SGFRSLDRVVISSCKKMKDLT--WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLK  164 (236)
Q Consensus        87 ~~l~~L~~L~i~~c~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~  164 (236)
                      ..+++|+.|+++++ ++..++  .+..+++|++|++++|. +..+..            ..+..+++|++|++.++. ++
T Consensus        94 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~L~~n~-l~  158 (680)
T 1ziw_A           94 AFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNG-LSSTKL------------GTQVQLENLQELLLSNNK-IQ  158 (680)
T ss_dssp             TTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSC-CSCCCC------------CSSSCCTTCCEEECCSSC-CC
T ss_pred             ccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCc-ccccCc------------hhhcccccCCEEEccCCc-cc
Confidence            34556666666655 344443  24456666666666552 221110            234467788888887653 33


Q ss_pred             ccCCC---CCCCCCccEEeEeCCCCCCCcCC
Q 046682          165 SVYPN---PLPLPKLKKIQVRGCPQLKKLPV  192 (236)
Q Consensus       165 ~i~~~---~~~~p~L~~L~i~~C~~L~~lp~  192 (236)
                      .+...   ....++|+.|+++++ +++.++.
T Consensus       159 ~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~  188 (680)
T 1ziw_A          159 ALKSEELDIFANSSLKKLELSSN-QIKEFSP  188 (680)
T ss_dssp             CBCHHHHGGGTTCEESEEECTTC-CCCCBCT
T ss_pred             ccCHHHhhccccccccEEECCCC-cccccCh
Confidence            33221   224578888888887 4555443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.44  E-value=6.9e-07  Score=82.33  Aligned_cols=106  Identities=15%  Similarity=0.095  Sum_probs=55.0

Q ss_pred             CCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccccccccc-----ccccccccccCcccEEecccccc
Q 046682           88 GFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDIS-----EIIGSEHNFFAQLESLTIKWGRN  162 (236)
Q Consensus        88 ~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~-----~~~~~~~~~~p~L~~L~l~~~~~  162 (236)
                      .+++|+.|+++++ .++.++.  .+++|+.|++.++ .++.+..........     .+. ..-..+++|++|+++++ +
T Consensus       179 ~~~~L~~L~Ls~N-~l~~l~~--~~~~L~~L~L~~N-~l~~l~~~~~~L~~L~Ls~N~L~-~lp~~l~~L~~L~Ls~N-~  252 (622)
T 3g06_A          179 LPSGLQELSVSDN-QLASLPT--LPSELYKLWAYNN-RLTSLPALPSGLKELIVSGNRLT-SLPVLPSELKELMVSGN-R  252 (622)
T ss_dssp             CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSS-C
T ss_pred             cCCCCcEEECCCC-CCCCCCC--ccchhhEEECcCC-cccccCCCCCCCCEEEccCCccC-cCCCCCCcCcEEECCCC-C
Confidence            3467777777776 4555432  2456666666654 222222110000000     000 00034567777777765 5


Q ss_pred             ccccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          163 LKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       163 L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      ++.++.   .+++|+.|++++| +++.+|...... ++|+.+
T Consensus       253 L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l-~~L~~L  289 (622)
T 3g06_A          253 LTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHL-SSETTV  289 (622)
T ss_dssp             CSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGS-CTTCEE
T ss_pred             CCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhc-cccCEE
Confidence            555554   4677888888777 666777543322 444444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.44  E-value=7.9e-07  Score=81.06  Aligned_cols=119  Identities=15%  Similarity=0.127  Sum_probs=66.5

Q ss_pred             cceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhcccC
Q 046682           35 ITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQI  114 (236)
Q Consensus        35 ~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~  114 (236)
                      .|+.|.++++.-..+  +.+..+++|+.|.+++|.+..++         .....+++|+.|+++++ .++.++.+..+++
T Consensus       442 ~L~~L~Ls~n~l~~l--p~~~~l~~L~~L~Ls~N~l~~lp---------~~~~~l~~L~~L~Ls~N-~l~~lp~l~~l~~  509 (567)
T 1dce_A          442 DVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALP---------PALAALRCLEVLQASDN-ALENVDGVANLPR  509 (567)
T ss_dssp             TCSEEECTTSCCSSC--CCGGGGTTCCEEECCSSCCCCCC---------GGGGGCTTCCEEECCSS-CCCCCGGGTTCSS
T ss_pred             CceEEEecCCCCCCC--cCccccccCcEeecCcccccccc---------hhhhcCCCCCEEECCCC-CCCCCcccCCCCC
Confidence            466677766643333  34666677777777766544442         23345667777777665 5666665666777


Q ss_pred             ccEEeEecccccceec-cccccccccccccccccccCcccEEeccccccccccCCCCC----CCCCccEE
Q 046682          115 LKQLRIVFCTEMEEII-SVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPL----PLPKLKKI  179 (236)
Q Consensus       115 L~~L~i~~C~~L~~i~-~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~----~~p~L~~L  179 (236)
                      |++|+++++ .+..+. +            ..+..+++|+.|++++.+ +..++....    .+|+|+.|
T Consensus       510 L~~L~Ls~N-~l~~~~~p------------~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          510 LQELLLCNN-RLQQSAAI------------QPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             CCEEECCSS-CCCSSSTT------------GGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred             CcEEECCCC-CCCCCCCc------------HHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCcc
Confidence            777777664 333331 1            244566677777776543 443332211    25566655

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.43  E-value=3.4e-06  Score=71.89  Aligned_cols=168  Identities=14%  Similarity=0.052  Sum_probs=99.0

Q ss_pred             cccceEEEEeccCCCCccccchhhcccCCceeecCC-ccceeeeccccc--c-------------c--ccCccCCCCccE
Q 046682           33 VSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTEE--V-------------K--KLFQSGFRSLDR   94 (236)
Q Consensus        33 ~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~--~-------------~--~~~~~~l~~L~~   94 (236)
                      +.+++.|++++..-..+....+.++++|++|++++| -++.+..+....  .             .  +.....+++|+.
T Consensus        29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            457777777776433342233567777777777777 334332111100  0             0  112345678888


Q ss_pred             EEEecCCCCCcchhh--hcccCccEEeEecccccceecccccc-----cc--------ccccccccccccCcccEEeccc
Q 046682           95 VVISSCKKMKDLTWL--VFVQILKQLRIVFCTEMEEIISVDKL-----RD--------ISEIIGSEHNFFAQLESLTIKW  159 (236)
Q Consensus        95 L~i~~c~~l~~l~~l--~~lp~L~~L~i~~C~~L~~i~~~~~~-----~~--------~~~~~~~~~~~~p~L~~L~l~~  159 (236)
                      |++.++ ++..++..  ....++..|++.++.++..+......     ..        ..++. ......++|+.|.+.+
T Consensus       109 L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~-~~~f~~~~L~~l~l~~  186 (350)
T 4ay9_X          109 LLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH-NSAFNGTQLDELNLSD  186 (350)
T ss_dssp             EEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC-TTSSTTEEEEEEECTT
T ss_pred             cccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC-hhhccccchhHHhhcc
Confidence            888776 46555432  24456677777777777666432100     00        00111 2233456889999988


Q ss_pred             cccccccCCCC-CCCCCccEEeEeCCCCCCCcCCCCCCCCCcceE
Q 046682          160 GRNLKSVYPNP-LPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVV  203 (236)
Q Consensus       160 ~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~  203 (236)
                      ...++.++.+. ..+++|+.|+++++ +++.+|.+......+|+.
T Consensus       187 ~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~  230 (350)
T 4ay9_X          187 NNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRA  230 (350)
T ss_dssp             CTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEEC
T ss_pred             CCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhh
Confidence            88999998764 46889999999998 799999764432234433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.40  E-value=3.1e-07  Score=68.44  Aligned_cols=112  Identities=15%  Similarity=0.205  Sum_probs=82.4

Q ss_pred             hcccCCceeecCCccc--eeeecccccccccCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccc
Q 046682           56 YMENLQELDLEDINLE--EMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVD  133 (236)
Q Consensus        56 ~l~~L~~L~i~~c~le--~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~  133 (236)
                      ..++|+.|++++|.+.  .+.         .....+++|+.|++++| .++.+..+..+++|++|+++++. +...++  
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~---------~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~--   81 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLE---------GLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNR-VSGGLE--   81 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCC---------SCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSC-CCSCTH--
T ss_pred             CCccCeEEEccCCcCChhHHH---------HHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCc-ccchHH--
Confidence            3478999999999554  332         23356899999999998 68877667889999999999874 333211  


Q ss_pred             ccccccccccccccccCcccEEeccccccccccC--CCCCCCCCccEEeEeCCCCCCCcCC
Q 046682          134 KLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVY--PNPLPLPKLKKIQVRGCPQLKKLPV  192 (236)
Q Consensus       134 ~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~--~~~~~~p~L~~L~i~~C~~L~~lp~  192 (236)
                                .....+++|++|+++++. ++.++  .....+++|+.|++++| ++..+|.
T Consensus        82 ----------~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~  130 (149)
T 2je0_A           82 ----------VLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLND  130 (149)
T ss_dssp             ----------HHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTT
T ss_pred             ----------HHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHH
Confidence                      133458999999999864 55543  33456899999999998 5666665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.39  E-value=2.3e-06  Score=81.72  Aligned_cols=97  Identities=13%  Similarity=0.165  Sum_probs=61.0

Q ss_pred             CCCccEEEEecCCCCCcchh-hh--cccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccc----
Q 046682           89 FRSLDRVVISSCKKMKDLTW-LV--FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR----  161 (236)
Q Consensus        89 l~~L~~L~i~~c~~l~~l~~-l~--~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~----  161 (236)
                      +++|+.|++++| ++..++. +.  .+++|+.|+++++ .+..++             ..+..+++|+.|.+++.+    
T Consensus       727 l~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp-------------~~l~~L~~L~~L~Ls~N~~ls~  791 (876)
T 4ecn_A          727 TYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFP-------------TQPLNSSQLKAFGIRHQRDAEG  791 (876)
T ss_dssp             GGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCC-------------CGGGGCTTCCEEECCCCBCTTC
T ss_pred             cCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccc-------------hhhhcCCCCCEEECCCCCCccc
Confidence            347788888777 5666543 32  6778888888765 333332             244577888888887633    


Q ss_pred             --cccccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          162 --NLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       162 --~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                        -...++.....+++|+.|++++|. +..+|....   ++|+.+
T Consensus       792 N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~---~~L~~L  832 (876)
T 4ecn_A          792 NRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLT---PQLYIL  832 (876)
T ss_dssp             CBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC---SSSCEE
T ss_pred             ccccccChHHHhcCCCCCEEECCCCC-CCccCHhhc---CCCCEE
Confidence              223344444567888888888884 477887633   355544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.38  E-value=7e-07  Score=79.16  Aligned_cols=75  Identities=13%  Similarity=0.115  Sum_probs=40.7

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhccc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQ  113 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp  113 (236)
                      .+|+.|+++++.-..+  +.+..+++|+.|++++|.+..+.            ...++|+.|+++++ .+..++.+..++
T Consensus       173 ~~L~~L~L~~n~l~~l--~~~~~l~~L~~L~l~~N~l~~l~------------~~~~~L~~L~l~~n-~l~~lp~~~~l~  237 (454)
T 1jl5_A          173 PSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKKLP------------DLPLSLESIVAGNN-ILEELPELQNLP  237 (454)
T ss_dssp             TTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSSCC------------CCCTTCCEEECCSS-CCSSCCCCTTCT
T ss_pred             ccccEEECcCCcCCcC--ccccCCCCCCEEECCCCcCCcCC------------CCcCcccEEECcCC-cCCcccccCCCC
Confidence            4666666666543333  34566677777777666333221            01235666666655 444554455566


Q ss_pred             CccEEeEecc
Q 046682          114 ILKQLRIVFC  123 (236)
Q Consensus       114 ~L~~L~i~~C  123 (236)
                      +|++|+++++
T Consensus       238 ~L~~L~l~~N  247 (454)
T 1jl5_A          238 FLTTIYADNN  247 (454)
T ss_dssp             TCCEEECCSS
T ss_pred             CCCEEECCCC
Confidence            6666666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.37  E-value=1.8e-07  Score=72.42  Aligned_cols=87  Identities=11%  Similarity=0.104  Sum_probs=65.5

Q ss_pred             CccEEEEecCCCCCcc--hhhhcccCccEEeEecccccceeccccccccccccccccccc----cCcccEEecccccccc
Q 046682           91 SLDRVVISSCKKMKDL--TWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNF----FAQLESLTIKWGRNLK  164 (236)
Q Consensus        91 ~L~~L~i~~c~~l~~l--~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~----~p~L~~L~l~~~~~L~  164 (236)
                      +|++|++++|. +++.  ..+..+++|++|++++|..+++-.-            ..+..    -++|++|+|++|++++
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL------------~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL------------ERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHH------------HHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHH------------HHHHhcccccCCCCEEEcCCCCcCC
Confidence            69999999996 7763  3466899999999999998865320            12222    2589999999999877


Q ss_pred             ccCCC-CCCCCCccEEeEeCCCCCCCc
Q 046682          165 SVYPN-PLPLPKLKKIQVRGCPQLKKL  190 (236)
Q Consensus       165 ~i~~~-~~~~p~L~~L~i~~C~~L~~l  190 (236)
                      .-... ...+++|++|.+++|++++..
T Consensus       129 D~Gl~~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          129 DKGIIALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             HHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred             HHHHHHHhcCCCCCEEECCCCCCCCch
Confidence            53221 235899999999999998863

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.36  E-value=1e-06  Score=83.76  Aligned_cols=105  Identities=15%  Similarity=0.112  Sum_probs=49.5

Q ss_pred             cCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCC-CCccccchhhcccCCceeecCCccceeeecccccccccCc
Q 046682            8 KHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKS-APFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQ   86 (236)
Q Consensus         8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~-~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~   86 (236)
                      .+|+.|+++......+.  .....-.++|+.|+++++.. ..+....+.++++|+.|.+++|.+..+..        ...
T Consensus        24 ~~l~~LdLs~N~i~~i~--~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p--------~~~   93 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVT--ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP--------DAF   93 (844)
T ss_dssp             TTCCEEEEESCCCCEEC--SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT--------TSS
T ss_pred             CCcCEEECCCCcCCccC--hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH--------hHc
Confidence            56667776643211110  01111225777777777733 22222345667777777777764443321        122


Q ss_pred             cCCCCccEEEEecCCCCCc-ch---hhhcccCccEEeEecc
Q 046682           87 SGFRSLDRVVISSCKKMKD-LT---WLVFVQILKQLRIVFC  123 (236)
Q Consensus        87 ~~l~~L~~L~i~~c~~l~~-l~---~l~~lp~L~~L~i~~C  123 (236)
                      ..+++|+.|++++| .+.. ++   ++..+++|++|+++++
T Consensus        94 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N  133 (844)
T 3j0a_A           94 QGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN  133 (844)
T ss_dssp             CSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC
T ss_pred             cCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC
Confidence            33455555555554 2332 11   1334555555555544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.35  E-value=1.7e-06  Score=82.24  Aligned_cols=132  Identities=18%  Similarity=0.190  Sum_probs=85.7

Q ss_pred             ccccceEEEEeccCCCCccccchhhcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCCCCCcc--hh
Q 046682           32 LVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDL--TW  108 (236)
Q Consensus        32 l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l--~~  108 (236)
                      ++++++.|+++++.-..+....+.++++|+.|++++| ....+..        .....+++|+.|+++++ ++..+  ..
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~--------~~f~~L~~L~~L~Ls~N-~l~~~~p~~   92 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK--------EAFRNLPNLRILDLGSS-KIYFLHPDA   92 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECT--------TTTSSCTTCCEEECTTC-CCCEECTTS
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCH--------HHhcCCCCCCEEECCCC-cCcccCHhH
Confidence            6689999999998654443356889999999999999 6554422        23467899999999988 56665  24


Q ss_pred             hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCC--CCCCCCCccEEeEeCC
Q 046682          109 LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP--NPLPLPKLKKIQVRGC  184 (236)
Q Consensus       109 l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~--~~~~~p~L~~L~i~~C  184 (236)
                      +..+++|++|++++|.--..++..           ..+..+++|++|+++++. +..+..  ....+++|+.|++.++
T Consensus        93 ~~~l~~L~~L~Ls~n~l~~~~~~~-----------~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A           93 FQGLFHLFELRLYFCGLSDAVLKD-----------GYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             SCSCSSCCCEECTTCCCSSCCSTT-----------CCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             ccCCcccCEeeCcCCCCCcccccC-----------ccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCC
Confidence            678999999999988432222211           123455666666665542 222211  1234555666655554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.33  E-value=4.9e-07  Score=75.77  Aligned_cols=161  Identities=14%  Similarity=0.052  Sum_probs=86.3

Q ss_pred             ccceEEEEeccCCCCccccch--hhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch--hh
Q 046682           34 SITQFVLVYHCKSAPFNLLHL--AYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT--WL  109 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l--~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--~l  109 (236)
                      ++|+.|++.++.-.......+  ..+++|++|+++++.+........    ......+++|+.|+++++ .+..++  .+
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~----~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~  165 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA----ELQQWLKPGLKVLSIAQA-HSPAFSCEQV  165 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH----HHHTTBCSCCCEEEEECC-SSCCCCTTSC
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH----HHHhhhccCCCEEEeeCC-CcchhhHHHh
Confidence            469999999886432222333  678889999998884332100000    001124667777777766 344443  23


Q ss_pred             hcccCccEEeEecccccce--ec-----ccccccc--------cccccc--c-cccccCcccEEecccccccccc-CCCC
Q 046682          110 VFVQILKQLRIVFCTEMEE--II-----SVDKLRD--------ISEIIG--S-EHNFFAQLESLTIKWGRNLKSV-YPNP  170 (236)
Q Consensus       110 ~~lp~L~~L~i~~C~~L~~--i~-----~~~~~~~--------~~~~~~--~-~~~~~p~L~~L~l~~~~~L~~i-~~~~  170 (236)
                      ..+++|++|+++++.-...  +.     .......        ......  . ....+++|++|++++.. +..+ +...
T Consensus       166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~  244 (310)
T 4glp_A          166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSA  244 (310)
T ss_dssp             CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCC
T ss_pred             ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhH
Confidence            4667777777776642211  00     0000000        000000  0 12356888999988754 4443 3222


Q ss_pred             CC---CCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          171 LP---LPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       171 ~~---~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      ..   +++|++|+++++ +++.+|....   ++|+.+
T Consensus       245 ~~~~~~~~L~~L~Ls~N-~l~~lp~~~~---~~L~~L  277 (310)
T 4glp_A          245 PRCMWSSALNSLNLSFA-GLEQVPKGLP---AKLRVL  277 (310)
T ss_dssp             SSCCCCTTCCCEECCSS-CCCSCCSCCC---SCCSCE
T ss_pred             HhccCcCcCCEEECCCC-CCCchhhhhc---CCCCEE
Confidence            33   379999999887 6778887543   344444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.33  E-value=9.6e-06  Score=64.63  Aligned_cols=123  Identities=15%  Similarity=0.173  Sum_probs=87.0

Q ss_pred             ccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch--hhhcccCccEEeEecccccceecccccc
Q 046682           58 ENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT--WLVFVQILKQLRIVFCTEMEEIISVDKL  135 (236)
Q Consensus        58 ~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~  135 (236)
                      ++|+.|+++++.++.+...        ....+++|+.|+++++ .+..+.  .+..+++|++|+++++ .++.+..    
T Consensus        32 ~~l~~L~l~~n~i~~i~~~--------~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~----   97 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPG--------AFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN-KITELPK----   97 (220)
T ss_dssp             TTCCEEECCSSCCCEECTT--------SSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS-CCCCCCT----
T ss_pred             cCCCEEECCCCcCCCcCHh--------HhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC-cCCccCH----
Confidence            6899999999977665321        3356889999999987 577662  4678999999999886 4544431    


Q ss_pred             ccccccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          136 RDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       136 ~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                              ..+..+++|++|++++. .++.+... ...+++|+.|+++++ +++.+|.+......+|+.+
T Consensus        98 --------~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  157 (220)
T 2v9t_B           98 --------SLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTM  157 (220)
T ss_dssp             --------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred             --------hHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEE
Confidence                    23457899999999875 45655443 446899999999997 6777776432222444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.32  E-value=7.2e-07  Score=68.55  Aligned_cols=115  Identities=15%  Similarity=0.149  Sum_probs=82.5

Q ss_pred             hhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccc
Q 046682           54 LAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVD  133 (236)
Q Consensus        54 l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~  133 (236)
                      .....+|+.|.+++|.+..+.  ..       ....++|+.|+++++ .+..+..+..+++|++|+++++ .+..+..  
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~--~~-------~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~--   81 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIE--NL-------GATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNN-RICRIGE--   81 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCC--CG-------GGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSS-CCCEECS--
T ss_pred             cCCcCCceEEEeeCCCCchhH--Hh-------hhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCC-cccccCc--
Confidence            445678999999999655441  11       122459999999998 6887777788999999999987 3555431  


Q ss_pred             ccccccccccccccccCcccEEeccccccccccCC--CCCCCCCccEEeEeCCCCCCCcCCC
Q 046682          134 KLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP--NPLPLPKLKKIQVRGCPQLKKLPVN  193 (236)
Q Consensus       134 ~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~--~~~~~p~L~~L~i~~C~~L~~lp~~  193 (236)
                                .....+++|++|++++. .+..++.  ....+++|+.|.+.+++ +..+|..
T Consensus        82 ----------~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~  131 (176)
T 1a9n_A           82 ----------GLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHY  131 (176)
T ss_dssp             ----------CHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTH
T ss_pred             ----------chhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhH
Confidence                      12357899999999876 3455554  34468999999999985 5566653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.31  E-value=5.1e-06  Score=63.64  Aligned_cols=105  Identities=20%  Similarity=0.232  Sum_probs=66.1

Q ss_pred             ccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceecccccc
Q 046682           58 ENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKL  135 (236)
Q Consensus        58 ~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~  135 (236)
                      ++|+.|.++++.+..+...        ....+++|+.|+++++ ++..++.  +..+++|++|+++++ .++.+..    
T Consensus        28 ~~l~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~----   93 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHG--------VFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPN----   93 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTT--------TTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT----
T ss_pred             CCCcEEEeCCCcccEeCHH--------HhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCH----
Confidence            5778888877755443211        1245677888888776 5666543  456778888888765 3433321    


Q ss_pred             ccccccccccccccCcccEEeccccccccccCCCC-CCCCCccEEeEeCCC
Q 046682          136 RDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNP-LPLPKLKKIQVRGCP  185 (236)
Q Consensus       136 ~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~~C~  185 (236)
                              ..+..+++|++|++++. .++.++... ..+++|+.|++.+.+
T Consensus        94 --------~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           94 --------GVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             --------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             --------HHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence                    13456778888888765 566665543 347788888877763

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.31  E-value=8.3e-07  Score=81.79  Aligned_cols=38  Identities=18%  Similarity=0.254  Sum_probs=30.8

Q ss_pred             ccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCC
Q 046682          148 FFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQ  186 (236)
Q Consensus       148 ~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~  186 (236)
                      .+++|+.|+++++ +++.++.....+++|+.|++.+++-
T Consensus       259 ~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          259 LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred             ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence            5688999999886 6777776666789999999999853

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.29  E-value=1.4e-06  Score=79.13  Aligned_cols=148  Identities=13%  Similarity=0.109  Sum_probs=88.4

Q ss_pred             ccceEEEEeccCCC-CccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch--hhh
Q 046682           34 SITQFVLVYHCKSA-PFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT--WLV  110 (236)
Q Consensus        34 ~~L~~L~l~~c~~~-~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--~l~  110 (236)
                      ..|+.+.+.++... ......+..+++++.+.++.+.+..+..        .....+++|+.|+++++.....+.  .+.
T Consensus       420 ~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~--------~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~  491 (635)
T 4g8a_A          420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--------GIFNGLSSLEVLKMAGNSFQENFLPDIFT  491 (635)
T ss_dssp             TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCT--------TTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred             ccccchhhhhccccccccccccccccccccccccccccccccc--------cccccchhhhhhhhhhcccccccCchhhh
Confidence            57777777766432 1222345677788888887774443311        122456778888887765444322  245


Q ss_pred             cccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCCCCCCC
Q 046682          111 FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGCPQLKK  189 (236)
Q Consensus       111 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~  189 (236)
                      .+++|++|++++| +++.+++            ..+..+++|++|+|++. +++.+... ...+++|+.|+++++ ++..
T Consensus       492 ~l~~L~~L~Ls~N-~L~~l~~------------~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~  556 (635)
T 4g8a_A          492 ELRNLTFLDLSQC-QLEQLSP------------TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMT  556 (635)
T ss_dssp             TCTTCCEEECTTS-CCCEECT------------TTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCB
T ss_pred             hccccCEEECCCC-ccCCcCh------------HHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCC
Confidence            6788888888877 4555542            24556788888888765 46665543 335778888888876 5555


Q ss_pred             cCCCCC-CCCCcceEE
Q 046682          190 LPVNSS-SVKERRVVI  204 (236)
Q Consensus       190 lp~~~~-~~~~~l~~~  204 (236)
                      ++.... ..+.+|+.+
T Consensus       557 ~~~~~l~~l~~~L~~L  572 (635)
T 4g8a_A          557 SKKQELQHFPSSLAFL  572 (635)
T ss_dssp             CCSSCTTCCCTTCCEE
T ss_pred             CCHHHHHhhhCcCCEE
Confidence            544322 222345544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.28  E-value=3.6e-06  Score=64.51  Aligned_cols=107  Identities=11%  Similarity=0.097  Sum_probs=78.3

Q ss_pred             cccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hh
Q 046682           33 VSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LV  110 (236)
Q Consensus        33 ~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~  110 (236)
                      ++.++.|.+.++.-..+....+..+++|+.|+++++.+..+...        ....+++|+.|+++++ +++.++.  +.
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~N-~l~~~~~~~~~   97 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG--------VFDKLTKLTILYLHEN-KLQSLPNGVFD   97 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT--------TTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh--------HccCCCccCEEECCCC-CccccCHHHhh
Confidence            46899999998864444323467889999999999966655221        2356889999999987 6777654  56


Q ss_pred             cccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682          111 FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR  161 (236)
Q Consensus       111 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  161 (236)
                      .+++|++|+++++ .++.+..            ..+..+++|++|++.+.+
T Consensus        98 ~l~~L~~L~l~~N-~l~~~~~------------~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           98 KLTQLKELALDTN-QLKSVPD------------GIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TCTTCCEEECCSS-CCSCCCT------------TTTTTCTTCCEEECCSSC
T ss_pred             CCcccCEEECcCC-cceEeCH------------HHhcCCcccCEEEecCCC
Confidence            7899999999887 5554432            134568999999998764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.25  E-value=9.2e-08  Score=82.61  Aligned_cols=38  Identities=13%  Similarity=0.049  Sum_probs=20.3

Q ss_pred             cccCcccEEecccccccccc-----CCCC--CCCCCccEEeEeCCC
Q 046682          147 NFFAQLESLTIKWGRNLKSV-----YPNP--LPLPKLKKIQVRGCP  185 (236)
Q Consensus       147 ~~~p~L~~L~l~~~~~L~~i-----~~~~--~~~p~L~~L~i~~C~  185 (236)
                      ..+++|++|.++++. +...     +...  ..+++|+.|.+++|.
T Consensus       241 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          241 KSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             GGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             ccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence            455666666666554 2211     1111  236777777777773

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.22  E-value=2.8e-07  Score=83.52  Aligned_cols=111  Identities=18%  Similarity=0.177  Sum_probs=54.9

Q ss_pred             cCcCCcceeEEeee--hHHHHHHhcCCcccccceEEEEeccCCC-Cccccc-hhhcccCCceeecCCccceeeecccccc
Q 046682            6 GLKHLNVLSWSFGS--SLAVQKFLKYPKLVSITQFVLVYHCKSA-PFNLLH-LAYMENLQELDLEDINLEEMKIDSTEEV   81 (236)
Q Consensus         6 ~L~~L~~L~i~~~~--~~~l~~l~~~~~l~~~L~~L~l~~c~~~-~~~~~~-l~~l~~L~~L~i~~c~le~l~~~~~~~~   81 (236)
                      .+.+|+.|+++.+.  ...+..+...   .++|+.|++.+|... ...+.. ..++++|++|++++|.+........   
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~---~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l---  176 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKS---FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL---  176 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHH---CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG---
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHh---CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH---
Confidence            34566666665432  1223333211   247777777777431 100122 2366777777777773222111100   


Q ss_pred             cccCccCCCCccEEEEecCC-CCCc--chh-hhcccCccEEeEecc
Q 046682           82 KKLFQSGFRSLDRVVISSCK-KMKD--LTW-LVFVQILKQLRIVFC  123 (236)
Q Consensus        82 ~~~~~~~l~~L~~L~i~~c~-~l~~--l~~-l~~lp~L~~L~i~~C  123 (236)
                       ......+++|+.|++++|. .+..  +.. ...+|+|++|++.+|
T Consensus       177 -~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          177 -SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             -GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             -HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence             0112246677888777774 1211  111 234577777777766

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.19  E-value=4.7e-06  Score=76.01  Aligned_cols=55  Identities=13%  Similarity=0.061  Sum_probs=30.5

Q ss_pred             CCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccce
Q 046682            9 HLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEE   72 (236)
Q Consensus         9 ~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~   72 (236)
                      +|+.|+++...   +..+...  +.++|+.|+++++.-..+  +  ..+++|+.|++++|.+..
T Consensus        60 ~L~~L~Ls~n~---L~~lp~~--l~~~L~~L~Ls~N~l~~i--p--~~l~~L~~L~Ls~N~l~~  114 (571)
T 3cvr_A           60 QFSELQLNRLN---LSSLPDN--LPPQITVLEITQNALISL--P--ELPASLEYLDACDNRLST  114 (571)
T ss_dssp             TCSEEECCSSC---CSCCCSC--CCTTCSEEECCSSCCSCC--C--CCCTTCCEEECCSSCCSC
T ss_pred             CccEEEeCCCC---CCccCHh--HcCCCCEEECcCCCCccc--c--cccCCCCEEEccCCCCCC
Confidence            56666665332   2222221  235788888877743333  2  345777777777774433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.17  E-value=9.7e-08  Score=86.60  Aligned_cols=107  Identities=14%  Similarity=0.115  Sum_probs=55.8

Q ss_pred             cCcCCcceeEEee---ehHHHHHHhcCCcccccceEEEEeccCCC--Cc-cccc-hhhcccCCceeecCCccceeeeccc
Q 046682            6 GLKHLNVLSWSFG---SSLAVQKFLKYPKLVSITQFVLVYHCKSA--PF-NLLH-LAYMENLQELDLEDINLEEMKIDST   78 (236)
Q Consensus         6 ~L~~L~~L~i~~~---~~~~l~~l~~~~~l~~~L~~L~l~~c~~~--~~-~~~~-l~~l~~L~~L~i~~c~le~l~~~~~   78 (236)
                      .+++|+.|++..+   ....+..+...   .++|+.|++.+|.-.  .. .+.. ...+++|++|.+++|. ..+.....
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~---~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l  203 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGLAAIAAT---CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSAL  203 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHHHHHHHH---CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHH
T ss_pred             hCCCCcEEeCCCcCCCCHHHHHHHHHh---CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHH
Confidence            5788999988754   23345555432   258888888888511  11 0112 2356678888877663 11100000


Q ss_pred             ccccccCccCCCCccEEEEecCCCCCcch-hhhcccCccEEeE
Q 046682           79 EEVKKLFQSGFRSLDRVVISSCKKMKDLT-WLVFVQILKQLRI  120 (236)
Q Consensus        79 ~~~~~~~~~~l~~L~~L~i~~c~~l~~l~-~l~~lp~L~~L~i  120 (236)
                          ..-...+++|+.|++.+|..+..++ .+..+++|++|.+
T Consensus       204 ----~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l  242 (594)
T 2p1m_B          204 ----ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT  242 (594)
T ss_dssp             ----HHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred             ----HHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence                0001225677777777765444432 2335566666653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.16  E-value=2.7e-06  Score=79.78  Aligned_cols=107  Identities=15%  Similarity=0.106  Sum_probs=72.0

Q ss_pred             hhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch-hhhcccCccEEeEecccccceeccc
Q 046682           54 LAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT-WLVFVQILKQLRIVFCTEMEEIISV  132 (236)
Q Consensus        54 l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~-~l~~lp~L~~L~i~~C~~L~~i~~~  132 (236)
                      +..+++|+.|+++++.+..+..         ....+++|+.|+++++ ++..++ .+..+++|++|+++++. ++.++  
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~---------~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp--  286 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISA---------NIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLP--  286 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCG---------GGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCC--
T ss_pred             hccCCCCcEEECCCCCCCCCCh---------hhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccC--
Confidence            5567778888888775444421         2235778888888776 566664 35678888888887764 44443  


Q ss_pred             cccccccccccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCC
Q 046682          133 DKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCP  185 (236)
Q Consensus       133 ~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~  185 (236)
                                 ..+..+++|++|+|+++ .+..++.....+++|+.|.+++++
T Consensus       287 -----------~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          287 -----------AELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             -----------SSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSC
T ss_pred             -----------hhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCc
Confidence                       24557788888888765 566776666677888888888774

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.16  E-value=1.9e-07  Score=80.68  Aligned_cols=37  Identities=14%  Similarity=0.226  Sum_probs=25.9

Q ss_pred             ccCcccEEeccccccccc-----cCCCC-CCCCCccEEeEeCCC
Q 046682          148 FFAQLESLTIKWGRNLKS-----VYPNP-LPLPKLKKIQVRGCP  185 (236)
Q Consensus       148 ~~p~L~~L~l~~~~~L~~-----i~~~~-~~~p~L~~L~i~~C~  185 (236)
                      .+++|++|.++++. +..     ++... ..+|+|+.|++.+|+
T Consensus       272 ~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          272 ENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             SSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             cCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            37889999998764 333     43322 347899999999884

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.14  E-value=2.6e-06  Score=77.65  Aligned_cols=152  Identities=11%  Similarity=0.087  Sum_probs=72.9

Q ss_pred             cCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCcc
Q 046682            8 KHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQS   87 (236)
Q Consensus         8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~   87 (236)
                      .+|+.|+++.....   .+.   ...++|+.|+++++.-..+  +.+..  +|+.|++++|.+..++.            
T Consensus        80 ~~L~~L~Ls~N~l~---~ip---~~l~~L~~L~Ls~N~l~~i--p~l~~--~L~~L~Ls~N~l~~lp~------------  137 (571)
T 3cvr_A           80 PQITVLEITQNALI---SLP---ELPASLEYLDACDNRLSTL--PELPA--SLKHLDVDNNQLTMLPE------------  137 (571)
T ss_dssp             TTCSEEECCSSCCS---CCC---CCCTTCCEEECCSSCCSCC--CCCCT--TCCEEECCSSCCSCCCC------------
T ss_pred             CCCCEEECcCCCCc---ccc---cccCCCCEEEccCCCCCCc--chhhc--CCCEEECCCCcCCCCCC------------
Confidence            56777776643322   222   3346888888887743333  22332  77888877774443311            


Q ss_pred             CCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccccccccccccccccc----ccCcc-------cEEe
Q 046682           88 GFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHN----FFAQL-------ESLT  156 (236)
Q Consensus        88 ~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~----~~p~L-------~~L~  156 (236)
                      .+++|+.|+++++ .++.++.  .+++|++|+++++. ++.+................+.    ..++|       +.|+
T Consensus       138 ~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~  213 (571)
T 3cvr_A          138 LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFR  213 (571)
T ss_dssp             CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCC--------CCEEEE
T ss_pred             cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCCC-CCCcchhhCCCCEEECcCCCCCchhhHHHhhhcccccceEEe
Confidence            2445555555444 3444332  34445555554442 2221110000000000000000    01145       7888


Q ss_pred             ccccccccccCCCCCCCCCccEEeEeCCCC
Q 046682          157 IKWGRNLKSVYPNPLPLPKLKKIQVRGCPQ  186 (236)
Q Consensus       157 l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~  186 (236)
                      ++++ .++.++.....+++|+.|++.+++-
T Consensus       214 Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          214 CREN-RITHIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             CCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred             cCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence            8764 5666666555688888888888754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.13  E-value=1.1e-06  Score=79.55  Aligned_cols=41  Identities=17%  Similarity=0.209  Sum_probs=28.0

Q ss_pred             cccCcccEEeccccccccc--cCCCCCCCCCccEEeEeCCCCCCC
Q 046682          147 NFFAQLESLTIKWGRNLKS--VYPNPLPLPKLKKIQVRGCPQLKK  189 (236)
Q Consensus       147 ~~~p~L~~L~l~~~~~L~~--i~~~~~~~p~L~~L~i~~C~~L~~  189 (236)
                      ..+++|++|+|++|+ +..  +......+|+|+.|.+++|. +..
T Consensus       485 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~  527 (592)
T 3ogk_B          485 RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM  527 (592)
T ss_dssp             TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred             hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence            456888999998887 432  11112357889999999997 443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.11  E-value=1.5e-05  Score=62.27  Aligned_cols=36  Identities=11%  Similarity=0.053  Sum_probs=15.4

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCcc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINL   70 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~l   70 (236)
                      +.++.|++.+..-..+. ..+..+++|+.|+++++.+
T Consensus        31 ~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i   66 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRI   66 (193)
T ss_dssp             TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCC
T ss_pred             CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcC
Confidence            34455555444322221 2344444555555544433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.10  E-value=3.1e-05  Score=66.26  Aligned_cols=112  Identities=18%  Similarity=0.205  Sum_probs=82.8

Q ss_pred             ccCCceeecCCccceeeecccccccccCcc-CCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccc
Q 046682           58 ENLQELDLEDINLEEMKIDSTEEVKKLFQS-GFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDK  134 (236)
Q Consensus        58 ~~L~~L~i~~c~le~l~~~~~~~~~~~~~~-~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~  134 (236)
                      ++++.|+++++.+..+..+.        .. .+++|+.|+++++ ++..++.  +..+++|++|+++++. ++.+..   
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~--------~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~---  105 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEW--------TPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDE---  105 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTS--------SSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECT---
T ss_pred             CCCCEEECCCCCCCccChhh--------hhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-CCcCCH---
Confidence            56899999999776663221        22 6899999999987 6777653  5689999999999863 655542   


Q ss_pred             cccccccccccccccCcccEEeccccccccccCC-CCCCCCCccEEeEeCCCCCCCcCCC
Q 046682          135 LRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP-NPLPLPKLKKIQVRGCPQLKKLPVN  193 (236)
Q Consensus       135 ~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~  193 (236)
                               ..+..+++|++|++++.. +..+.. ....+++|+.|.+.++ +++.+|..
T Consensus       106 ---------~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~  154 (361)
T 2xot_A          106 ---------FLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRFPVE  154 (361)
T ss_dssp             ---------TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCSCCGG
T ss_pred             ---------HHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-cCCeeCHH
Confidence                     245678999999998754 555543 3456899999999987 67777754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.09  E-value=3.7e-05  Score=61.14  Aligned_cols=124  Identities=11%  Similarity=0.158  Sum_probs=85.0

Q ss_pred             ccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceecccccc
Q 046682           58 ENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKL  135 (236)
Q Consensus        58 ~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~  135 (236)
                      +.++.|+++++.+..+....       ....+++|+.|+++++ +++.++.  +..+++|++|+++++. ++.+..    
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~-------~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~----   98 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATG-------IFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNR-LENVQH----   98 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCC-------CGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCG----
T ss_pred             CCCCEEEcCCCcCCccCchh-------hhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCc-cCccCH----
Confidence            46789999988666552211       1346899999999887 5777653  6789999999998863 444331    


Q ss_pred             ccccccccccccccCcccEEeccccccccccCC-CCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          136 RDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP-NPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       136 ~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                              ..+..+++|++|++++.. ++.+.. ....+++|+.|+++++ +++.++........+|+.+
T Consensus        99 --------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  158 (220)
T 2v70_A           99 --------KMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTL  158 (220)
T ss_dssp             --------GGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEE
T ss_pred             --------hHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEE
Confidence                    245678999999998753 555543 3456899999999997 6777743322222455544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.06  E-value=2.9e-05  Score=60.54  Aligned_cols=103  Identities=15%  Similarity=0.173  Sum_probs=68.0

Q ss_pred             ccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceecccccc
Q 046682           58 ENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKL  135 (236)
Q Consensus        58 ~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~  135 (236)
                      ++|+.|+++++.+..+.         .....+++|+.|+++++ .+..+..  +..+++|++|+++++. ++.+..    
T Consensus        31 ~~l~~L~L~~n~i~~ip---------~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~----   95 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVP---------KELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR-LRCIPP----   95 (193)
T ss_dssp             TTCCEEECCSSCCCSCC---------GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCT----
T ss_pred             CCCCEEECCCCcCchhH---------HHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc-cCEeCH----
Confidence            57888888888555442         12345788888888876 5666643  5678888888887753 444331    


Q ss_pred             ccccccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCC
Q 046682          136 RDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGC  184 (236)
Q Consensus       136 ~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C  184 (236)
                              ..+..+++|++|++++. .++.++.+ ...+++|+.|.+.+-
T Consensus        96 --------~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           96 --------RTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             --------TTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             --------HHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCC
Confidence                    24556788888888764 45666554 335777887777653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.06  E-value=1.9e-07  Score=73.27  Aligned_cols=106  Identities=18%  Similarity=0.265  Sum_probs=62.9

Q ss_pred             chhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh-hhcccCccEEeEecccccceecc
Q 046682           53 HLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW-LVFVQILKQLRIVFCTEMEEIIS  131 (236)
Q Consensus        53 ~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~-l~~lp~L~~L~i~~C~~L~~i~~  131 (236)
                      .+..+++|+.|++++|.+..+.          ....+++|+.|+++++ .+..++. ...+++|++|+++++ .+..+. 
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~----------~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-  109 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS----------SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-  109 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC----------CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH-
T ss_pred             HHhcCCCCCEEECCCCCCcccc----------ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC-
Confidence            4567777888887777444431          2234677777877776 4555543 335577788877766 343321 


Q ss_pred             ccccccccccccccccccCcccEEeccccccccccCC--CCCCCCCccEEeEeCCC
Q 046682          132 VDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP--NPLPLPKLKKIQVRGCP  185 (236)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~--~~~~~p~L~~L~i~~C~  185 (236)
                                   .+..+++|++|++++.. +..++.  ....+++|+.|.+.+++
T Consensus       110 -------------~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          110 -------------GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             -------------HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             -------------ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence                         23456777777776542 333221  12356777777777764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.05  E-value=3.7e-05  Score=59.78  Aligned_cols=34  Identities=6%  Similarity=0.083  Sum_probs=15.3

Q ss_pred             CCCCccEEEEecCCCCCcch--hhhcccCccEEeEec
Q 046682           88 GFRSLDRVVISSCKKMKDLT--WLVFVQILKQLRIVF  122 (236)
Q Consensus        88 ~l~~L~~L~i~~c~~l~~l~--~l~~lp~L~~L~i~~  122 (236)
                      .+++|+.|+++++ .+..+.  .+..+++|++|++++
T Consensus        52 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           52 RLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             GCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC
Confidence            3445555555444 343331  233445555555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.04  E-value=2.2e-05  Score=61.06  Aligned_cols=107  Identities=14%  Similarity=0.165  Sum_probs=77.6

Q ss_pred             cccceEEEEeccCCCCcccc-chhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--h
Q 046682           33 VSITQFVLVYHCKSAPFNLL-HLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--L  109 (236)
Q Consensus        33 ~~~L~~L~l~~c~~~~~~~~-~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l  109 (236)
                      +..++.|.+.+..-..+... .+..+++|+.|+++++.+..+..        .....+++|+.|++++. +++.++.  +
T Consensus        28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~   98 (192)
T 1w8a_A           28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP--------NAFEGASHIQELQLGEN-KIKEISNKMF   98 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT--------TTTTTCTTCCEEECCSC-CCCEECSSSS
T ss_pred             CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH--------hHcCCcccCCEEECCCC-cCCccCHHHh
Confidence            35899999998854444222 27889999999999996665522        23456899999999987 6777653  5


Q ss_pred             hcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682          110 VFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR  161 (236)
Q Consensus       110 ~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  161 (236)
                      ..+++|++|+++++ .+..+..            ..+..+++|++|++++.+
T Consensus        99 ~~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           99 LGLHQLKTLNLYDN-QISCVMP------------GSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             TTCTTCCEEECCSS-CCCEECT------------TSSTTCTTCCEEECTTCC
T ss_pred             cCCCCCCEEECCCC-cCCeeCH------------HHhhcCCCCCEEEeCCCC
Confidence            67899999999876 4544432            245678899999997643

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.97  E-value=1.5e-05  Score=74.75  Aligned_cols=103  Identities=14%  Similarity=0.054  Sum_probs=78.5

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch-hhhcc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT-WLVFV  112 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~-~l~~l  112 (236)
                      ..|+.|+|+++.-..+. ..+..+++|+.|++++|.+..++         .....+++|+.|+++++ +++.++ .+..+
T Consensus       224 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~lp---------~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l  292 (727)
T 4b8c_D          224 QLWHALDLSNLQIFNIS-ANIFKYDFLTRLYLNGNSLTELP---------AEIKNLSNLRVLDLSHN-RLTSLPAELGSC  292 (727)
T ss_dssp             CCCCEEECTTSCCSCCC-GGGGGCCSCSCCBCTTSCCSCCC---------GGGGGGTTCCEEECTTS-CCSSCCSSGGGG
T ss_pred             CCCcEEECCCCCCCCCC-hhhcCCCCCCEEEeeCCcCcccC---------hhhhCCCCCCEEeCcCC-cCCccChhhcCC
Confidence            68999999988654442 34668999999999999665552         23457899999999988 577775 46789


Q ss_pred             cCccEEeEecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682          113 QILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR  161 (236)
Q Consensus       113 p~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  161 (236)
                      ++|++|+++++ .+..++             ..+..+++|+.|+|++.+
T Consensus       293 ~~L~~L~L~~N-~l~~lp-------------~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          293 FQLKYFYFFDN-MVTTLP-------------WEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             TTCSEEECCSS-CCCCCC-------------SSTTSCTTCCCEECTTSC
T ss_pred             CCCCEEECCCC-CCCccC-------------hhhhcCCCccEEeCCCCc
Confidence            99999999987 455543             246678899999998654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.96  E-value=4.1e-06  Score=72.13  Aligned_cols=14  Identities=21%  Similarity=0.285  Sum_probs=8.3

Q ss_pred             hhcccCCceeecCC
Q 046682           55 AYMENLQELDLEDI   68 (236)
Q Consensus        55 ~~l~~L~~L~i~~c   68 (236)
                      ..+++|++|.+++|
T Consensus       169 ~~~P~L~~L~L~g~  182 (362)
T 2ra8_A          169 DAMPLLNNLKIKGT  182 (362)
T ss_dssp             HTCTTCCEEEEECC
T ss_pred             hcCCCCcEEEEeCC
Confidence            44566666666655

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.94  E-value=1.1e-06  Score=68.91  Aligned_cols=104  Identities=15%  Similarity=0.135  Sum_probs=77.9

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhccc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQ  113 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp  113 (236)
                      ++|+.|++.++.-..+  +.+..+++|+.|++++|.+..+.         .....+++|+.|+++++ ++..++.+..++
T Consensus        48 ~~L~~L~ls~n~l~~l--~~~~~l~~L~~L~l~~n~l~~l~---------~~~~~~~~L~~L~L~~N-~l~~l~~~~~l~  115 (198)
T 1ds9_A           48 KACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIE---------NLDAVADTLEELWISYN-QIASLSGIEKLV  115 (198)
T ss_dssp             TTCSEEECSEEEESCC--CCHHHHTTCCEEEEEEEEECSCS---------SHHHHHHHCSEEEEEEE-ECCCHHHHHHHH
T ss_pred             CCCCEEECCCCCCccc--cccccCCCCCEEECCCCCccccc---------chhhcCCcCCEEECcCC-cCCcCCccccCC
Confidence            6899999998854444  47889999999999999555442         11234689999999998 788888788899


Q ss_pred             CccEEeEecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682          114 ILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR  161 (236)
Q Consensus       114 ~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  161 (236)
                      +|++|+++++. +..+...           ..+..+++|++|++.+++
T Consensus       116 ~L~~L~l~~N~-i~~~~~~-----------~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          116 NLRVLYMSNNK-ITNWGEI-----------DKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HSSEEEESEEE-CCCHHHH-----------HHHTTTTTCSEEEECSCH
T ss_pred             CCCEEECCCCc-CCchhHH-----------HHHhcCCCCCEEEecCCc
Confidence            99999998863 3332210           134578999999998875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.93  E-value=1.9e-05  Score=71.98  Aligned_cols=88  Identities=15%  Similarity=0.186  Sum_probs=46.1

Q ss_pred             cCCCCccEEEEecCCCCCcch-hhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccc
Q 046682           87 SGFRSLDRVVISSCKKMKDLT-WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKS  165 (236)
Q Consensus        87 ~~l~~L~~L~i~~c~~l~~l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~  165 (236)
                      ..+++|+.|+++++ .++.++ .+..+++|++|+++++ .++.+              +.+..+++|+.|++++. .++.
T Consensus       460 ~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~l--------------p~l~~l~~L~~L~Ls~N-~l~~  522 (567)
T 1dce_A          460 EQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENV--------------DGVANLPRLQELLLCNN-RLQQ  522 (567)
T ss_dssp             GGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCC--------------GGGTTCSSCCEEECCSS-CCCS
T ss_pred             cccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCC--------------cccCCCCCCcEEECCCC-CCCC
Confidence            44556666666555 455443 3445666666666554 23222              12345666666666653 3444


Q ss_pred             c--CCCCCCCCCccEEeEeCCCCCCCcCC
Q 046682          166 V--YPNPLPLPKLKKIQVRGCPQLKKLPV  192 (236)
Q Consensus       166 i--~~~~~~~p~L~~L~i~~C~~L~~lp~  192 (236)
                      +  +.....+++|+.|.++++ .+..+|.
T Consensus       523 ~~~p~~l~~l~~L~~L~L~~N-~l~~~~~  550 (567)
T 1dce_A          523 SAAIQPLVSCPRLVLLNLQGN-SLCQEEG  550 (567)
T ss_dssp             SSTTGGGGGCTTCCEEECTTS-GGGGSSS
T ss_pred             CCCcHHHhcCCCCCEEEecCC-cCCCCcc
Confidence            4  333345666666666665 3444443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.92  E-value=2.3e-06  Score=77.57  Aligned_cols=60  Identities=10%  Similarity=0.055  Sum_probs=29.9

Q ss_pred             cCcCCcceeEEeee-----hHHHHHHhcCCcccccceEEEEeccCCCCccc---c-chhhcccCCceeecCC
Q 046682            6 GLKHLNVLSWSFGS-----SLAVQKFLKYPKLVSITQFVLVYHCKSAPFNL---L-HLAYMENLQELDLEDI   68 (236)
Q Consensus         6 ~L~~L~~L~i~~~~-----~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~---~-~l~~l~~L~~L~i~~c   68 (236)
                      ++++|++|++..+.     ...+..+...   .++|+.|++.++.-..+..   . .+.++++|+.|.+.+|
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~---~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~  230 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQH---NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF  230 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHH---CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhc---CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence            56777777765332     1113333222   2467777776553221110   1 1245667777777665

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.80  E-value=3e-06  Score=74.40  Aligned_cols=85  Identities=15%  Similarity=0.132  Sum_probs=48.1

Q ss_pred             CCccEEEEecCCCCCcc------hhhhcccCccEEeEecccccceeccccccccccccccccc-cccCcccEEecccccc
Q 046682           90 RSLDRVVISSCKKMKDL------TWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEH-NFFAQLESLTIKWGRN  162 (236)
Q Consensus        90 ~~L~~L~i~~c~~l~~l------~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~-~~~p~L~~L~l~~~~~  162 (236)
                      ++|+.|++++|. +...      ..+..+++|++|+++++ .+......    .   .. ..+ ...++|++|+++++. 
T Consensus       313 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~----~---l~-~~l~~~~~~L~~L~L~~n~-  381 (461)
T 1z7x_W          313 CQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVR----E---LC-QGLGQPGSVLRVLWLADCD-  381 (461)
T ss_dssp             CCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHH----H---HH-HHHTSTTCCCCEEECTTSC-
T ss_pred             ccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHH----H---HH-HHHcCCCCceEEEECCCCC-
Confidence            577777777773 5442      12345677777777766 33321100    0   00 011 125789999998873 


Q ss_pred             cc-----ccCCCCCCCCCccEEeEeCCC
Q 046682          163 LK-----SVYPNPLPLPKLKKIQVRGCP  185 (236)
Q Consensus       163 L~-----~i~~~~~~~p~L~~L~i~~C~  185 (236)
                      +.     .++.....+++|++|++++|+
T Consensus       382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          382 VSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            33     233223347889999998883

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.72  E-value=4.8e-06  Score=73.08  Aligned_cols=40  Identities=20%  Similarity=0.375  Sum_probs=24.3

Q ss_pred             ccCcccEEeccccccccc-----cCCC-CCCCCCccEEeEeCCCCCCC
Q 046682          148 FFAQLESLTIKWGRNLKS-----VYPN-PLPLPKLKKIQVRGCPQLKK  189 (236)
Q Consensus       148 ~~p~L~~L~l~~~~~L~~-----i~~~-~~~~p~L~~L~i~~C~~L~~  189 (236)
                      .+++|++|+++++. +..     +... ...+++|++|++++| ++..
T Consensus       225 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~  270 (461)
T 1z7x_W          225 SKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITA  270 (461)
T ss_dssp             HCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCH
T ss_pred             hCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC-CCCH
Confidence            45777777777663 222     1111 124678888888888 5555

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.71  E-value=0.0002  Score=54.81  Aligned_cols=80  Identities=19%  Similarity=0.157  Sum_probs=38.6

Q ss_pred             CCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccC
Q 046682           90 RSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVY  167 (236)
Q Consensus        90 ~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~  167 (236)
                      ++|+.|++++. .+..++.  +..+++|++|++++. +++.+..            ..+..+++|++|++++. +++.++
T Consensus        33 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~------------~~~~~l~~L~~L~L~~N-~l~~l~   97 (174)
T 2r9u_A           33 TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPT------------GVFDKLTQLTQLDLNDN-HLKSIP   97 (174)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCCCCC
T ss_pred             CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccCh------------hHhCCcchhhEEECCCC-ccceeC
Confidence            45555555554 3444421  345555666665544 3333321            12234556666666542 344444


Q ss_pred             CC-CCCCCCccEEeEeCC
Q 046682          168 PN-PLPLPKLKKIQVRGC  184 (236)
Q Consensus       168 ~~-~~~~p~L~~L~i~~C  184 (236)
                      .. ...+++|+.|.+.+.
T Consensus        98 ~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           98 RGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             TTTTTTCTTCSEEECCSS
T ss_pred             HHHhccccCCCEEEeCCC
Confidence            33 234556666666554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.70  E-value=0.00021  Score=54.42  Aligned_cols=79  Identities=15%  Similarity=0.120  Sum_probs=35.1

Q ss_pred             CCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccC
Q 046682           90 RSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVY  167 (236)
Q Consensus        90 ~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~  167 (236)
                      ++|+.|++++. +++.+..  +..+++|++|++++. .++.+..            ..+..+++|++|++++. +++.++
T Consensus        30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~------------~~f~~l~~L~~L~L~~N-~l~~~~   94 (170)
T 3g39_A           30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPA------------GVFDKLTQLTQLSLNDN-QLKSIP   94 (170)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCCCCC
T ss_pred             CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccCh------------hhccCCCCCCEEECCCC-ccCEeC
Confidence            44555555444 3444321  334555555555543 2332221            12234555555555443 344444


Q ss_pred             CC-CCCCCCccEEeEeC
Q 046682          168 PN-PLPLPKLKKIQVRG  183 (236)
Q Consensus       168 ~~-~~~~p~L~~L~i~~  183 (236)
                      .. ...+++|+.|.+.+
T Consensus        95 ~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           95 RGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             TTTTTTCTTCCEEECCS
T ss_pred             HHHhcCCCCCCEEEeCC
Confidence            32 22345555555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.65  E-value=0.00012  Score=62.94  Aligned_cols=131  Identities=18%  Similarity=0.174  Sum_probs=69.6

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCC-------CCCcc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCK-------KMKDL  106 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~-------~l~~l  106 (236)
                      ++|+.|+|.++.+..+  +.+. +++|++|.+..|.+..-.+..      .....+|+|++|+++.+.       .+..+
T Consensus       172 P~L~~L~L~g~~~l~l--~~~~-~~~L~~L~L~~~~l~~~~l~~------l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          172 PLLNNLKIKGTNNLSI--GKKP-RPNLKSLEIISGGLPDSVVED------ILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             TTCCEEEEECCBTCBC--CSCB-CTTCSEEEEECSBCCHHHHHH------HHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             CCCcEEEEeCCCCcee--cccc-CCCCcEEEEecCCCChHHHHH------HHHccCCCCcEEEEeccccccccchhHHHH
Confidence            5788888877744332  2232 678888888766332110000      011247788888875321       12222


Q ss_pred             hh---hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccc-----cCCCCCCCCCccE
Q 046682          107 TW---LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKS-----VYPNPLPLPKLKK  178 (236)
Q Consensus       107 ~~---l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~-----i~~~~~~~p~L~~  178 (236)
                      ..   ...+|+|++|.+.+|.--.....     .   .  .....+|+|++|+|+. ..+..     +..+...+++|+.
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~-----~---l--a~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~  311 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVE-----M---F--LESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKF  311 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHH-----H---H--HHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSE
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHH-----H---H--HhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceE
Confidence            21   12467888888877643211100     0   0  1123578888888864 33443     2222234678888


Q ss_pred             EeEeCC
Q 046682          179 IQVRGC  184 (236)
Q Consensus       179 L~i~~C  184 (236)
                      |++++|
T Consensus       312 L~L~~n  317 (362)
T 2ra8_A          312 INMKYN  317 (362)
T ss_dssp             EECCSB
T ss_pred             EECCCC
Confidence            888877

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.55  E-value=0.00019  Score=54.87  Aligned_cols=80  Identities=14%  Similarity=0.123  Sum_probs=40.4

Q ss_pred             ccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceecccccc
Q 046682           58 ENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKL  135 (236)
Q Consensus        58 ~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~  135 (236)
                      ++|+.|+++++.+..+..        .....+++|+.|++++. +++.++.  +..+++|++|++++. .++.+..    
T Consensus        33 ~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~----   98 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEP--------GVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPR----   98 (174)
T ss_dssp             TTCSEEECCSSCCCCCCT--------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT----
T ss_pred             CCCcEEEeCCCCccccCH--------HHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeCH----
Confidence            556666666664443311        12234566666666655 4555543  245666666666553 3333321    


Q ss_pred             ccccccccccccccCcccEEeccc
Q 046682          136 RDISEIIGSEHNFFAQLESLTIKW  159 (236)
Q Consensus       136 ~~~~~~~~~~~~~~p~L~~L~l~~  159 (236)
                              ..+..+++|++|++.+
T Consensus        99 --------~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           99 --------GAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             --------TTTTTCTTCSEEECCS
T ss_pred             --------HHhccccCCCEEEeCC
Confidence                    1234556666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.52  E-value=0.0011  Score=55.61  Aligned_cols=36  Identities=3%  Similarity=0.005  Sum_probs=18.3

Q ss_pred             CcCCcceeEEee-ehHHHHHHhcCCcccccceEEEEeccC
Q 046682            7 LKHLNVLSWSFG-SSLAVQKFLKYPKLVSITQFVLVYHCK   45 (236)
Q Consensus         7 L~~L~~L~i~~~-~~~~l~~l~~~~~l~~~L~~L~l~~c~   45 (236)
                      +.+++.|.++.. ....+..+...   .++|+.|+|++..
T Consensus        24 ~~~l~~L~l~g~i~~~~~~~l~~~---l~~L~~LdLs~n~   60 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDFRHLRDE---FPSLKVLDISNAE   60 (329)
T ss_dssp             HHHCSEEEEEEEECHHHHHHHHHS---CTTCCEEEEEEEE
T ss_pred             hCceeEEEEeccccHHHHHHHHHh---hccCeEEecCcce
Confidence            345566666532 22334444332   3567777777653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.51  E-value=1.3e-05  Score=68.61  Aligned_cols=35  Identities=14%  Similarity=-0.002  Sum_probs=19.2

Q ss_pred             CcccEEeccccccccccC-----CCCCCCCCccEEeEeCCC
Q 046682          150 AQLESLTIKWGRNLKSVY-----PNPLPLPKLKKIQVRGCP  185 (236)
Q Consensus       150 p~L~~L~l~~~~~L~~i~-----~~~~~~p~L~~L~i~~C~  185 (236)
                      ++|++|+++++. +....     .....+++|+.|.+++|.
T Consensus       225 ~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          225 NHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             TTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            367777776542 22211     112346777777777774

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.43  E-value=0.00032  Score=53.37  Aligned_cols=33  Identities=18%  Similarity=0.167  Sum_probs=14.7

Q ss_pred             CCCccEEEEecCCCCCcchh--hhcccCccEEeEec
Q 046682           89 FRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVF  122 (236)
Q Consensus        89 l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~  122 (236)
                      +++|+.|++++. ++..++.  +..+++|++|++++
T Consensus        53 l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           53 LTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence            444555555443 3444332  23444555555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.30  E-value=0.0023  Score=53.65  Aligned_cols=35  Identities=11%  Similarity=0.066  Sum_probs=17.7

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDIN   69 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~   69 (236)
                      .+|+.+.|.+ .-..+.-..+..+++|+.|.+.++.
T Consensus       101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~  135 (329)
T 3sb4_A          101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT  135 (329)
T ss_dssp             TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS
T ss_pred             CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC
Confidence            3455555544 1122222335667777777776553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.27  E-value=0.0008  Score=56.75  Aligned_cols=86  Identities=22%  Similarity=0.303  Sum_probs=59.9

Q ss_pred             cchhhcccCCceeecC-CccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccce
Q 046682           52 LHLAYMENLQELDLED-INLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEE  128 (236)
Q Consensus        52 ~~l~~l~~L~~L~i~~-c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~  128 (236)
                      +.+..+++|+.|++++ +.+..+..+        ....+++|+.|++++. ++..++.  +..+++|+.|+|++. ++..
T Consensus        25 p~l~~~~~L~~L~l~~~n~l~~~~~~--------~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~   94 (347)
T 2ifg_A           25 HHLPGAENLTELYIENQQHLQHLELR--------DLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALES   94 (347)
T ss_dssp             TTSCSCSCCSEEECCSCSSCCEECGG--------GSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSC
T ss_pred             CCCCCCCCeeEEEccCCCCCCCcChh--------HhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC-ccce
Confidence            3377788899999997 477766321        2356899999999887 6877653  568999999999874 4554


Q ss_pred             eccccccccccccccccccccCcccEEecccc
Q 046682          129 IISVDKLRDISEIIGSEHNFFAQLESLTIKWG  160 (236)
Q Consensus       129 i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~  160 (236)
                      ++..            .+..++ |+.|.+.+.
T Consensus        95 ~~~~------------~~~~~~-L~~l~l~~N  113 (347)
T 2ifg_A           95 LSWK------------TVQGLS-LQELVLSGN  113 (347)
T ss_dssp             CCST------------TTCSCC-CCEEECCSS
T ss_pred             eCHH------------HcccCC-ceEEEeeCC
Confidence            4321            122333 889988753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.15  E-value=0.0001  Score=62.85  Aligned_cols=139  Identities=11%  Similarity=-0.004  Sum_probs=68.2

Q ss_pred             cceEEEEeccCCCCccccchhhc-----ccCCceeecCCccceeeecccccccccCccCC-CCccEEEEecCCCCCcchh
Q 046682           35 ITQFVLVYHCKSAPFNLLHLAYM-----ENLQELDLEDINLEEMKIDSTEEVKKLFQSGF-RSLDRVVISSCKKMKDLTW  108 (236)
Q Consensus        35 ~L~~L~l~~c~~~~~~~~~l~~l-----~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l-~~L~~L~i~~c~~l~~l~~  108 (236)
                      +|+.|++++|.-.......+..+     ++|++|++++|.+.........    .....+ ++|+.|++++| .+.....
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~----~~l~~~~~~L~~L~Ls~N-~l~~~~~  126 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV----KTLAAIPFTITVLDLGWN-DFSSKSS  126 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH----HHHHTSCTTCCEEECCSS-CGGGSCH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH----HHHHhCCCCccEEECcCC-cCCcHHH
Confidence            67777777663222111223332     6677777776643322111000    001223 57777777776 3554321


Q ss_pred             ------hhc-ccCccEEeEecccccceeccccccccccccccccccccC-cccEEeccccccccccCC-----CCCCC-C
Q 046682          109 ------LVF-VQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFA-QLESLTIKWGRNLKSVYP-----NPLPL-P  174 (236)
Q Consensus       109 ------l~~-lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p-~L~~L~l~~~~~L~~i~~-----~~~~~-p  174 (236)
                            +.. .++|++|++++|. +.....    ...   . ..+..++ +|++|+++++. +.....     ....+ +
T Consensus       127 ~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~----~~l---~-~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~  196 (362)
T 3goz_A          127 SEFKQAFSNLPASITSLNLRGND-LGIKSS----DEL---I-QILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPA  196 (362)
T ss_dssp             HHHHHHHTTSCTTCCEEECTTSC-GGGSCH----HHH---H-HHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCT
T ss_pred             HHHHHHHHhCCCceeEEEccCCc-CCHHHH----HHH---H-HHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCC
Confidence                  112 2477777777652 221100    000   0 1223344 89999998863 333221     11234 4


Q ss_pred             CccEEeEeCCCCCCC
Q 046682          175 KLKKIQVRGCPQLKK  189 (236)
Q Consensus       175 ~L~~L~i~~C~~L~~  189 (236)
                      +|+.|++++|. +..
T Consensus       197 ~L~~L~Ls~N~-i~~  210 (362)
T 3goz_A          197 SVTSLDLSANL-LGL  210 (362)
T ss_dssp             TCCEEECTTSC-GGG
T ss_pred             CCCEEECCCCC-CCh
Confidence            89999999884 444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.10  E-value=0.0022  Score=54.03  Aligned_cols=85  Identities=19%  Similarity=0.274  Sum_probs=59.3

Q ss_pred             ccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccc
Q 046682           86 QSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNL  163 (236)
Q Consensus        86 ~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L  163 (236)
                      ...+++|+.|++++...+..++.  +..+++|+.|++++. ++..++.            ..+..+++|++|+|++ .+|
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~------------~~~~~l~~L~~L~l~~-N~l   92 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAP------------DAFHFTPRLSRLNLSF-NAL   92 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECT------------TGGGSCSCCCEEECCS-SCC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCH------------HHhcCCcCCCEEeCCC-Ccc
Confidence            45677889998887667877653  567888999998876 5666542            2445788899998876 356


Q ss_pred             cccCCCCCCCCCccEEeEeCC
Q 046682          164 KSVYPNPLPLPKLKKIQVRGC  184 (236)
Q Consensus       164 ~~i~~~~~~~p~L~~L~i~~C  184 (236)
                      ..++...+...+|+.|.+.+.
T Consensus        93 ~~~~~~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           93 ESLSWKTVQGLSLQELVLSGN  113 (347)
T ss_dssp             SCCCSTTTCSCCCCEEECCSS
T ss_pred             ceeCHHHcccCCceEEEeeCC
Confidence            666655444334888877764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.26  E-value=0.00025  Score=61.04  Aligned_cols=86  Identities=9%  Similarity=0.039  Sum_probs=48.4

Q ss_pred             CCCccEEEEecCCCCCcch------hhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEecccccc
Q 046682           89 FRSLDRVVISSCKKMKDLT------WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRN  162 (236)
Q Consensus        89 l~~L~~L~i~~c~~l~~l~------~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~  162 (236)
                      .++|+.|++++| .+.+..      .+...++|++|++++|. +.....    ...   . ..+...++|++|+++++. 
T Consensus       154 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~----~~L---~-~~L~~~~~L~~L~Ls~N~-  222 (372)
T 3un9_A          154 QCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGL----ELL---A-AQLDRNRQLQELNVAYNG-  222 (372)
T ss_dssp             TCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHH----HHH---H-HHGGGCSCCCEEECCSSC-
T ss_pred             CCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHH----HHH---H-HHHhcCCCcCeEECCCCC-
Confidence            456788888777 454421      12456778888877764 322100    000   0 133456789999998763 


Q ss_pred             ccccC-----CCCCCCCCccEEeEeCCC
Q 046682          163 LKSVY-----PNPLPLPKLKKIQVRGCP  185 (236)
Q Consensus       163 L~~i~-----~~~~~~p~L~~L~i~~C~  185 (236)
                      +....     ......++|+.|++.+++
T Consensus       223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          223 AGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            22211     111235889999999884

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.15  E-value=0.00028  Score=60.79  Aligned_cols=11  Identities=18%  Similarity=0.130  Sum_probs=5.5

Q ss_pred             cCccEEeEecc
Q 046682          113 QILKQLRIVFC  123 (236)
Q Consensus       113 p~L~~L~i~~C  123 (236)
                      ++|++|++++|
T Consensus       155 ~~L~~L~Ls~n  165 (372)
T 3un9_A          155 CQITTLRLSNN  165 (372)
T ss_dssp             CCCCEEECCSS
T ss_pred             CccceeeCCCC
Confidence            44555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=94.67  E-value=0.012  Score=48.25  Aligned_cols=34  Identities=18%  Similarity=0.065  Sum_probs=18.2

Q ss_pred             CCCCccEEEEecCCCCCcchh----hhcccCccEEeEec
Q 046682           88 GFRSLDRVVISSCKKMKDLTW----LVFVQILKQLRIVF  122 (236)
Q Consensus        88 ~l~~L~~L~i~~c~~l~~l~~----l~~lp~L~~L~i~~  122 (236)
                      .+++|+.|++++. ++..+..    +..+|+|+.|++++
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~  205 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG  205 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred             hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC
Confidence            3556666666554 4544432    23566666666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=93.61  E-value=0.59  Score=40.22  Aligned_cols=37  Identities=16%  Similarity=0.195  Sum_probs=18.8

Q ss_pred             ccccCcccEEeccccc----cccccCCCC-CCCCCccEEeEe
Q 046682          146 HNFFAQLESLTIKWGR----NLKSVYPNP-LPLPKLKKIQVR  182 (236)
Q Consensus       146 ~~~~p~L~~L~l~~~~----~L~~i~~~~-~~~p~L~~L~i~  182 (236)
                      ....++|+.+.+.+..    ..+.+.... ..+++|+.+.+.
T Consensus       267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP  308 (401)
T ss_dssp             TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred             hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence            3445666666664311    122344332 246677777765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=92.66  E-value=0.029  Score=42.99  Aligned_cols=114  Identities=10%  Similarity=-0.051  Sum_probs=62.2

Q ss_pred             ccceEEEEecc-CCCCc----cccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcc--
Q 046682           34 SITQFVLVYHC-KSAPF----NLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDL--  106 (236)
Q Consensus        34 ~~L~~L~l~~c-~~~~~----~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l--  106 (236)
                      +.|+.|++.+| .-...    ....+...++|++|++++|.+.+-.....    .......++|++|+++++ .+.+-  
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l----~~~L~~n~~L~~L~L~~N-~i~~~g~  110 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL----AEMLKVNNTLKSLNVESN-FISGSGI  110 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH----HHHHHHCSSCCEEECCSS-CCCHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH----HHHHHhCCCcCEEECcCC-cCCHHHH
Confidence            58899999888 32110    01224556889999998884322100000    011123467899999887 56552  


Q ss_pred             ----hhhhcccCccEEeE--ecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682          107 ----TWLVFVQILKQLRI--VFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR  161 (236)
Q Consensus       107 ----~~l~~lp~L~~L~i--~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  161 (236)
                          ..+...++|++|++  +++ .+..-.    .....    ..+...++|++|+++++.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g----~~~l~----~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQ-PLGNNV----EMEIA----NMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSS-CCCHHH----HHHHH----HHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHhCCCceEEEecCCCC-CCCHHH----HHHHH----HHHHhCCCcCEEeccCCC
Confidence                12445678999999  433 232110    00000    233455788888887653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=91.43  E-value=0.025  Score=43.28  Aligned_cols=116  Identities=15%  Similarity=0.065  Sum_probs=66.8

Q ss_pred             hhhcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCCCCCcch------hhhcccCccEEeEeccccc
Q 046682           54 LAYMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT------WLVFVQILKQLRIVFCTEM  126 (236)
Q Consensus        54 l~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~------~l~~lp~L~~L~i~~C~~L  126 (236)
                      +...++|++|++++| .+..-.+...    .......++|++|++++| .+.+-.      .+...++|++|++++|. +
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l----~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i  105 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKAC----AEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-I  105 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHH----HHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-C
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHH----HHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-C
Confidence            456789999999988 7653211000    012234578999999988 465421      23456889999998873 2


Q ss_pred             ceeccccccccccccccccccccCcccEEec--cccccccc-----cCCCCCCCCCccEEeEeCC
Q 046682          127 EEIISVDKLRDISEIIGSEHNFFAQLESLTI--KWGRNLKS-----VYPNPLPLPKLKKIQVRGC  184 (236)
Q Consensus       127 ~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l--~~~~~L~~-----i~~~~~~~p~L~~L~i~~C  184 (236)
                      ..-    ......    ..+...++|++|++  .+.. +..     +.......++|++|++.+|
T Consensus       106 ~~~----g~~~l~----~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          106 SGS----GILALV----EALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             CHH----HHHHHH----HGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             CHH----HHHHHH----HHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            211    000000    23445678999999  4332 221     1111123477888888776

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=89.37  E-value=3.2  Score=35.58  Aligned_cols=31  Identities=10%  Similarity=0.341  Sum_probs=14.0

Q ss_pred             cccEEeccccccccccCCCCC-CCCCccEEeEeC
Q 046682          151 QLESLTIKWGRNLKSVYPNPL-PLPKLKKIQVRG  183 (236)
Q Consensus       151 ~L~~L~l~~~~~L~~i~~~~~-~~p~L~~L~i~~  183 (236)
                      +|+.+.+.  .+++.|....+ .+++|+.+.+.+
T Consensus       249 ~L~~i~lp--~~i~~I~~~aF~~c~~L~~l~l~~  280 (401)
T 4fdw_A          249 GITTVKLP--NGVTNIASRAFYYCPELAEVTTYG  280 (401)
T ss_dssp             CCSEEEEE--TTCCEECTTTTTTCTTCCEEEEES
T ss_pred             CccEEEeC--CCccEEChhHhhCCCCCCEEEeCC
Confidence            44444442  22444443322 345566655544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=88.99  E-value=0.5  Score=38.48  Aligned_cols=92  Identities=14%  Similarity=0.035  Sum_probs=55.8

Q ss_pred             hhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhccc--CccEEeEecccccceeccc
Q 046682           55 AYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQ--ILKQLRIVFCTEMEEIISV  132 (236)
Q Consensus        55 ~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp--~L~~L~i~~C~~L~~i~~~  132 (236)
                      .++++|+.|.++++.+..+..  .    +.....+++|+.|++++- ++.++..+..+.  +|++|.+.+.+--..+...
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~--l----~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~  239 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDD--M----SSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLCDTFRDQ  239 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGG--G----TTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSH
T ss_pred             hhCCCCCEEECCCCCCCCCcc--c----hhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCcCccccCcc
Confidence            467899999999885554310  0    011235899999999775 677665455455  8999999876522211100


Q ss_pred             cccccccccccccccccCcccEEeccc
Q 046682          133 DKLRDISEIIGSEHNFFAQLESLTIKW  159 (236)
Q Consensus       133 ~~~~~~~~~~~~~~~~~p~L~~L~l~~  159 (236)
                       .....     ..+..||+|+.|+=..
T Consensus       240 -~~y~~-----~il~~~P~L~~LDg~~  260 (267)
T 3rw6_A          240 -STYIS-----AIRERFPKLLRLDGHE  260 (267)
T ss_dssp             -HHHHH-----HHHHHCTTCCEESSCB
T ss_pred             -hhHHH-----HHHHHCcccCeECCcC
Confidence             00000     2356889999887644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.17
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.13
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.12
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.07
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.06
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.06
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.99
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.9
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.8
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.69
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.68
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.63
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.59
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.48
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.47
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.38
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.3
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.25
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.21
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.2
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.08
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.05
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.0
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.0
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.95
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.84
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.49
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.29
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.25
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.04
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	95.69
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	94.43
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	92.86
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	88.7
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	88.21
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	85.59
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	85.28
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	80.23

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.17  E-value=7.9e-11  Score=92.89  Aligned_cols=96  Identities=14%  Similarity=0.267  Sum_probs=60.4

Q ss_pred             CCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccC
Q 046682           88 GFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVY  167 (236)
Q Consensus        88 ~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~  167 (236)
                      ..+.++.+.+.++ .+.....+..+++|++|.+.+|. +...              ..+..+++|+.|+++++ +++.+.
T Consensus       127 ~~~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~n~-~~~~--------------~~l~~l~~L~~L~Ls~n-~l~~l~  189 (227)
T d1h6ua2         127 GLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQ-VSDL--------------TPLANLSKLTTLKADDN-KISDIS  189 (227)
T ss_dssp             TCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSC-CCCC--------------GGGTTCTTCCEEECCSS-CCCCCG
T ss_pred             cccchhhhhchhh-hhchhhhhccccccccccccccc-cccc--------------hhhcccccceecccCCC-ccCCCh
Confidence            3456666666555 34444455677888888887653 2211              23456788888888876 566654


Q ss_pred             CCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          168 PNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       168 ~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      . ...+|+|++|++++| +++.+|.- .. .++|+.+
T Consensus       190 ~-l~~l~~L~~L~Ls~N-~lt~i~~l-~~-l~~L~~L  222 (227)
T d1h6ua2         190 P-LASLPNLIEVHLKNN-QISDVSPL-AN-TSNLFIV  222 (227)
T ss_dssp             G-GGGCTTCCEEECTTS-CCCBCGGG-TT-CTTCCEE
T ss_pred             h-hcCCCCCCEEECcCC-cCCCCccc-cc-CCCCCEE
Confidence            3 345788888888888 68887631 12 2555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.13  E-value=1.1e-10  Score=91.27  Aligned_cols=161  Identities=16%  Similarity=0.218  Sum_probs=107.0

Q ss_pred             CcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCc
Q 046682            7 LKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQ   86 (236)
Q Consensus         7 L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~   86 (236)
                      |.+|+.|.+..+....+..+    ...++|+.|+++++.-..+  ..+..+++|+.|++++|.++.+.          ..
T Consensus        45 L~~L~~L~l~~~~i~~l~~l----~~l~~L~~L~L~~n~i~~l--~~~~~l~~L~~L~l~~n~i~~l~----------~l  108 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGI----QYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDLS----------SL  108 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTG----GGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCGG----------GG
T ss_pred             hcCccEEECcCCCCCCchhH----hhCCCCCEEeCCCccccCc--cccccCccccccccccccccccc----------cc
Confidence            45566666543322222222    2237899999999854444  55778899999999988665542          23


Q ss_pred             cCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEecccccccccc
Q 046682           87 SGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSV  166 (236)
Q Consensus        87 ~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i  166 (236)
                      ..+++|+.|++.++. +..+..+..+++|+.++++++. +...              .....+++|+++.+.++ ++..+
T Consensus       109 ~~l~~L~~L~l~~~~-~~~~~~l~~l~~l~~l~~~~n~-l~~~--------------~~~~~l~~L~~l~l~~n-~l~~i  171 (210)
T d1h6ta2         109 KDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNK-ITDI--------------TVLSRLTKLDTLSLEDN-QISDI  171 (210)
T ss_dssp             TTCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSC-CCCC--------------GGGGGCTTCSEEECCSS-CCCCC
T ss_pred             ccccccccccccccc-cccccccccccccccccccccc-cccc--------------ccccccccccccccccc-ccccc
Confidence            568899999998884 5667777888999999887653 3322              13346788899988876 45554


Q ss_pred             CCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          167 YPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       167 ~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      .. ...+++|++|++++| +++.+|. ... ..+|+.+
T Consensus       172 ~~-l~~l~~L~~L~Ls~N-~i~~l~~-l~~-l~~L~~L  205 (210)
T d1h6ta2         172 VP-LAGLTKLQNLYLSKN-HISDLRA-LAG-LKNLDVL  205 (210)
T ss_dssp             GG-GTTCTTCCEEECCSS-CCCBCGG-GTT-CTTCSEE
T ss_pred             cc-ccCCCCCCEEECCCC-CCCCChh-hcC-CCCCCEE
Confidence            32 346788999999888 6887763 222 2555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.12  E-value=9.4e-11  Score=90.80  Aligned_cols=151  Identities=12%  Similarity=0.186  Sum_probs=105.8

Q ss_pred             CcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCc
Q 046682            7 LKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQ   86 (236)
Q Consensus         7 L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~   86 (236)
                      +.+++.|.+.......++.+    ...++|+.|+++++.-..+  ..+.++++|+.|++.+|.+..+          +..
T Consensus        39 l~~l~~L~l~~~~i~~l~~l----~~l~nL~~L~Ls~N~l~~~--~~l~~l~~L~~L~l~~n~~~~~----------~~l  102 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDGV----EYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADI----------TPL  102 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTTG----GGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC----------GGG
T ss_pred             hcCCCEEECCCCCCCCcccc----ccCCCcCcCccccccccCc--ccccCCcccccccccccccccc----------ccc
Confidence            45666666654332233222    1237999999999854444  4578899999999998844433          123


Q ss_pred             cCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEecccccccccc
Q 046682           87 SGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSV  166 (236)
Q Consensus        87 ~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i  166 (236)
                      ..+++|+.|++.++. ...+..+..+++|+.|+++++. +..+              ..+..+++|+.|.+.++ +++.+
T Consensus       103 ~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~n~-l~~~--------------~~l~~~~~L~~L~l~~n-~l~~l  165 (199)
T d2omxa2         103 ANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNT-ISDI--------------SALSGLTSLQQLNFSSN-QVTDL  165 (199)
T ss_dssp             TTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSC-CCCC--------------GGGTTCTTCSEEECCSS-CCCCC
T ss_pred             ccccccccccccccc-cccccccchhhhhHHhhhhhhh-hccc--------------ccccccccccccccccc-cccCC
Confidence            568899999998874 5556667889999999998763 4332              23457889999999875 45555


Q ss_pred             CCCCCCCCCccEEeEeCCCCCCCcCC
Q 046682          167 YPNPLPLPKLKKIQVRGCPQLKKLPV  192 (236)
Q Consensus       167 ~~~~~~~p~L~~L~i~~C~~L~~lp~  192 (236)
                      .. ...+++|++|+++++ +++.+|.
T Consensus       166 ~~-l~~l~~L~~L~ls~N-~i~~i~~  189 (199)
T d2omxa2         166 KP-LANLTTLERLDISSN-KVSDISV  189 (199)
T ss_dssp             GG-GTTCTTCCEEECCSS-CCCCCGG
T ss_pred             cc-ccCCCCCCEEECCCC-CCCCCcc
Confidence            42 446899999999999 5888763

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.07  E-value=1.7e-10  Score=89.25  Aligned_cols=139  Identities=12%  Similarity=0.164  Sum_probs=100.0

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhccc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQ  113 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp  113 (236)
                      .+++.|.+.++.-..+  ..++.+++|++|++++|.+..+          ++...+++|+.|++.++ .+..++.+..++
T Consensus        40 ~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~----------~~l~~l~~L~~L~l~~n-~~~~~~~l~~l~  106 (199)
T d2omxa2          40 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI----------TPLKNLTKLVDILMNNN-QIADITPLANLT  106 (199)
T ss_dssp             TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC----------GGGTTCTTCCEEECCSS-CCCCCGGGTTCT
T ss_pred             cCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCc----------ccccCCccccccccccc-cccccccccccc
Confidence            5788999998854444  5678899999999999865544          12456899999999887 567777788899


Q ss_pred             CccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCC
Q 046682          114 ILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVN  193 (236)
Q Consensus       114 ~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~  193 (236)
                      +|+.|++++|.... +              ..+..+++|+.|+++++. +..+. ....+++|+.|.+.+| +++.++.-
T Consensus       107 ~L~~L~l~~~~~~~-~--------------~~~~~l~~L~~L~l~~n~-l~~~~-~l~~~~~L~~L~l~~n-~l~~l~~l  168 (199)
T d2omxa2         107 NLTGLTLFNNQITD-I--------------DPLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLNFSSN-QVTDLKPL  168 (199)
T ss_dssp             TCSEEECCSSCCCC-C--------------GGGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSS-CCCCCGGG
T ss_pred             cccccccccccccc-c--------------cccchhhhhHHhhhhhhh-hcccc-cccccccccccccccc-cccCCccc
Confidence            99999998775432 1              234578999999998763 44443 2346889999999987 67777531


Q ss_pred             CCCCCCcceEEe
Q 046682          194 SSSVKERRVVIE  205 (236)
Q Consensus       194 ~~~~~~~l~~~~  205 (236)
                       .. .++|+.+.
T Consensus       169 -~~-l~~L~~L~  178 (199)
T d2omxa2         169 -AN-LTTLERLD  178 (199)
T ss_dssp             -TT-CTTCCEEE
T ss_pred             -cC-CCCCCEEE
Confidence             11 25666553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.06  E-value=2.4e-10  Score=89.18  Aligned_cols=127  Identities=20%  Similarity=0.268  Sum_probs=76.3

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhccc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQ  113 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp  113 (236)
                      ..++.|.+.+|.-..+  ..+..+++|++|++++|.++.+.          +...+++|+.|+++++ ++++++.+..++
T Consensus        46 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~----------~~~~l~~L~~L~l~~n-~i~~l~~l~~l~  112 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK----------PLANLKNLGWLFLDEN-KVKDLSSLKDLK  112 (210)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG----------GGTTCTTCCEEECCSS-CCCCGGGGTTCT
T ss_pred             cCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCcc----------ccccCccccccccccc-cccccccccccc
Confidence            3566777776643333  44667777777777777544431          2245677777777776 577766666777


Q ss_pred             CccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcC
Q 046682          114 ILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLP  191 (236)
Q Consensus       114 ~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp  191 (236)
                      +|+.|++.+|.. ..+              ..+..+++|+.+.+.+.. +.... ....+++|+.+.+.++ ++..++
T Consensus       113 ~L~~L~l~~~~~-~~~--------------~~l~~l~~l~~l~~~~n~-l~~~~-~~~~l~~L~~l~l~~n-~l~~i~  172 (210)
T d1h6ta2         113 KLKSLSLEHNGI-SDI--------------NGLVHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDN-QISDIV  172 (210)
T ss_dssp             TCCEEECTTSCC-CCC--------------GGGGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSS-CCCCCG
T ss_pred             cccccccccccc-ccc--------------cccccccccccccccccc-ccccc-cccccccccccccccc-cccccc
Confidence            777777776642 111              133456677777776542 33222 1334677777777776 455554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.7e-11  Score=99.15  Aligned_cols=161  Identities=16%  Similarity=0.121  Sum_probs=82.0

Q ss_pred             CcCCcceeEEee--ehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCC-ccceeeecccccccc
Q 046682            7 LKHLNVLSWSFG--SSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTEEVKK   83 (236)
Q Consensus         7 L~~L~~L~i~~~--~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~~~   83 (236)
                      ..+|++|+++.+  ....+..++...   ++|+.|++.+|.-....+..+..+++|++|++++| .+.+..+..      
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c---~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~------  115 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQC---SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT------  115 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTB---CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH------
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhC---CCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccch------
Confidence            446667765432  234455554443   47788888777421111233556677888888777 654321100      


Q ss_pred             cCccCCCCccEEEEecCCCCCcch--h-hh-cccCccEEeEeccc-ccceeccccccccccccccccccccCcccEEecc
Q 046682           84 LFQSGFRSLDRVVISSCKKMKDLT--W-LV-FVQILKQLRIVFCT-EMEEIISVDKLRDISEIIGSEHNFFAQLESLTIK  158 (236)
Q Consensus        84 ~~~~~l~~L~~L~i~~c~~l~~l~--~-l~-~lp~L~~L~i~~C~-~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~  158 (236)
                       -...+++|++|+|++|.++.+-.  . +. ..++|+.|++.+|. ++....-     .      .-....|+|++|+++
T Consensus       116 -l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l-----~------~l~~~~~~L~~L~L~  183 (284)
T d2astb2         116 -LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL-----S------TLVRRCPNLVHLDLS  183 (284)
T ss_dssp             -HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH-----H------HHHHHCTTCSEEECT
T ss_pred             -hhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccc-----c------ccccccccccccccc
Confidence             01235677777777776665421  1 11 24567777776653 2221100     0      011234666666666


Q ss_pred             ccccccccCC-CCCCCCCccEEeEeCCCCCC
Q 046682          159 WGRNLKSVYP-NPLPLPKLKKIQVRGCPQLK  188 (236)
Q Consensus       159 ~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~  188 (236)
                      +|+.++.-.. ....+|+|++|.+.+|+++.
T Consensus       184 ~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~  214 (284)
T d2astb2         184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDII  214 (284)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             cccCCCchhhhhhcccCcCCEEECCCCCCCC
Confidence            6665543211 12235666666666666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=9.2e-11  Score=95.90  Aligned_cols=159  Identities=18%  Similarity=0.131  Sum_probs=104.4

Q ss_pred             cccCcCCcceeEEeee--hHHHHHHhcCCcccccceEEEEeccCCCCc-cccc-hhhcccCCceeecCC-ccceeeeccc
Q 046682            4 LLGLKHLNVLSWSFGS--SLAVQKFLKYPKLVSITQFVLVYHCKSAPF-NLLH-LAYMENLQELDLEDI-NLEEMKIDST   78 (236)
Q Consensus         4 L~~L~~L~~L~i~~~~--~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~-~~~~-l~~l~~L~~L~i~~c-~le~l~~~~~   78 (236)
                      +.++.+|++|++..+.  ...+..+...    ++|+.|++++|.+..- .+.. +.++++|++|++++| ++.+-.+...
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~l~~~----~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~  142 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNTLAKN----SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA  142 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTC----TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred             HHhCCCcccccccccCCCcHHHHHHhcC----CCCcCccccccccccccccchhhHHHHhccccccccccccccccchhh
Confidence            4567888888876543  3445555432    5899999999976321 1122 357899999999999 7643211000


Q ss_pred             ccccccCccCCCCccEEEEecCC-CCCc--chh-hhcccCccEEeEecccccceeccccccccccccccccccccCcccE
Q 046682           79 EEVKKLFQSGFRSLDRVVISSCK-KMKD--LTW-LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLES  154 (236)
Q Consensus        79 ~~~~~~~~~~l~~L~~L~i~~c~-~l~~--l~~-l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~  154 (236)
                            .....++|++|++.+|. .+.+  +.. ...+|+|++|++++|..++.-..            ..+..+|+|++
T Consensus       143 ------~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~------------~~l~~~~~L~~  204 (284)
T d2astb2         143 ------VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF------------QEFFQLNYLQH  204 (284)
T ss_dssp             ------HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG------------GGGGGCTTCCE
T ss_pred             ------hcccccccchhhhcccccccccccccccccccccccccccccccCCCchhh------------hhhcccCcCCE
Confidence                  01234689999998874 3443  222 34688999999999887753221            24556889999


Q ss_pred             EeccccccccccCC-CCCCCCCccEEeEeCC
Q 046682          155 LTIKWGRNLKSVYP-NPLPLPKLKKIQVRGC  184 (236)
Q Consensus       155 L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C  184 (236)
                      |.+++|.++..-.. ....+|+|+.|++.+|
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            99999987754322 1235789999999888

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.96  E-value=1.3e-09  Score=85.74  Aligned_cols=157  Identities=15%  Similarity=0.145  Sum_probs=87.2

Q ss_pred             ccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceee-e------
Q 046682            3 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMK-I------   75 (236)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~-~------   75 (236)
                      .+..+++|+.|+++......+..+   .. .++++.+.+.++....+  ..+..+++|+.+.+.+|....+. .      
T Consensus        58 ~l~~l~~L~~L~ls~n~i~~~~~l---~~-l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~  131 (227)
T d1h6ua2          58 GVQYLNNLIGLELKDNQITDLAPL---KN-LTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNL  131 (227)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGGG---TT-CCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCGGGTTCTTC
T ss_pred             hHhcCCCCcEeecCCceeeccccc---cc-ccccccccccccccccc--ccccccccccccccccccccccchhccccch
Confidence            445556666666543221112111   11 14566666665543333  44566677777777666111110 0      


Q ss_pred             -----cccccccccCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccccccccccccccccccC
Q 046682           76 -----DSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFA  150 (236)
Q Consensus        76 -----~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p  150 (236)
                           ..............++|+.|.+.++ .+.....+..+++|++|+++++ +++.+.              .+..+|
T Consensus       132 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~Ls~n-~l~~l~--------------~l~~l~  195 (227)
T d1h6ua2         132 QVLYLDLNQITNISPLAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDN-KISDIS--------------PLASLP  195 (227)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCG--------------GGGGCT
T ss_pred             hhhhchhhhhchhhhhcccccccccccccc-ccccchhhcccccceecccCCC-ccCCCh--------------hhcCCC
Confidence                 0000001223345677888888776 4555556677888888888776 455442              345678


Q ss_pred             cccEEeccccccccccCCCCCCCCCccEEeEeC
Q 046682          151 QLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRG  183 (236)
Q Consensus       151 ~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~  183 (236)
                      +|++|+++++ +++.+.. ...+++|+.|++++
T Consensus       196 ~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         196 NLIEVHLKNN-QISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             TCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEE
T ss_pred             CCCEEECcCC-cCCCCcc-cccCCCCCEEEeeC
Confidence            8888888877 5776653 34677888887764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.90  E-value=2.3e-09  Score=89.82  Aligned_cols=153  Identities=15%  Similarity=0.175  Sum_probs=93.5

Q ss_pred             cccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccc
Q 046682            4 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKK   83 (236)
Q Consensus         4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~   83 (236)
                      .....+|+.|+++......+..+.    ..+.++.+.+.++.-..+  ..+..+++|+.|.++++.+..+.         
T Consensus       215 ~~~~~~L~~L~l~~n~l~~~~~l~----~l~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~~~l~~~~---------  279 (384)
T d2omza2         215 LGILTNLDELSLNGNQLKDIGTLA----SLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNIS---------  279 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGG----GCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG---------
T ss_pred             ccccCCCCEEECCCCCCCCcchhh----cccccchhccccCccCCC--CcccccccCCEeeccCcccCCCC---------
Confidence            344567777777644322232222    226889999998854333  55778899999999887444331         


Q ss_pred             cCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccc
Q 046682           84 LFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNL  163 (236)
Q Consensus        84 ~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L  163 (236)
                       +...++.++.+.+.++ .+..+..+..+++++.|+++++ +++.+.              .+..+|+|++|+++++ ++
T Consensus       280 -~~~~~~~l~~l~~~~n-~l~~~~~~~~~~~l~~L~ls~n-~l~~l~--------------~l~~l~~L~~L~L~~n-~l  341 (384)
T d2omza2         280 -PLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN-NISDIS--------------PVSSLTKLQRLFFANN-KV  341 (384)
T ss_dssp             -GGTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS-CCSCCG--------------GGGGCTTCCEEECCSS-CC
T ss_pred             -cccccccccccccccc-ccccccccchhcccCeEECCCC-CCCCCc--------------ccccCCCCCEEECCCC-CC
Confidence             2234566677766655 4555555666777777777665 343332              2346677777777766 45


Q ss_pred             cccCCCCCCCCCccEEeEeCCCCCCCcC
Q 046682          164 KSVYPNPLPLPKLKKIQVRGCPQLKKLP  191 (236)
Q Consensus       164 ~~i~~~~~~~p~L~~L~i~~C~~L~~lp  191 (236)
                      +.+. ....+|+|++|+++++ +++.+|
T Consensus       342 ~~l~-~l~~l~~L~~L~l~~N-~l~~l~  367 (384)
T d2omza2         342 SDVS-SLANLTNINWLSAGHN-QISDLT  367 (384)
T ss_dssp             CCCG-GGGGCTTCCEEECCSS-CCCBCG
T ss_pred             CCCh-hHcCCCCCCEEECCCC-cCCCCh
Confidence            5443 2334677777777766 566654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.80  E-value=1.1e-08  Score=85.63  Aligned_cols=166  Identities=17%  Similarity=0.218  Sum_probs=109.7

Q ss_pred             cccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccc
Q 046682            4 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKK   83 (236)
Q Consensus         4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~   83 (236)
                      ...+.+++.+.+.......+...    ....+|+.|++.++.-..+  +.+..+++|+.|.+.+|.+..+          
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~~----~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~----------  256 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITPL----GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL----------  256 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGG----GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC----------
T ss_pred             cccccccceeeccCCccCCCCcc----cccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCC----------
Confidence            34456666666543222222111    2236899999998854433  5677889999999998855443          


Q ss_pred             cCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccc
Q 046682           84 LFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNL  163 (236)
Q Consensus        84 ~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L  163 (236)
                      ++...+++|+.|+++++ .+..++.+..++.++.+.+.++. +..+              .....+++++.|++++. ++
T Consensus       257 ~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~l~~l~~~~n~-l~~~--------------~~~~~~~~l~~L~ls~n-~l  319 (384)
T d2omza2         257 APLSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQ-LEDI--------------SPISNLKNLTYLTLYFN-NI  319 (384)
T ss_dssp             GGGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSC-CSCC--------------GGGGGCTTCSEEECCSS-CC
T ss_pred             CcccccccCCEeeccCc-ccCCCCccccccccccccccccc-cccc--------------cccchhcccCeEECCCC-CC
Confidence            12345789999999876 57777777788888888887652 2222              23457788999999865 55


Q ss_pred             cccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEEec
Q 046682          164 KSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVIEG  206 (236)
Q Consensus       164 ~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~~  206 (236)
                      +.+.. ...+|+|++|++++| +++.+|. ... .++|+.+..
T Consensus       320 ~~l~~-l~~l~~L~~L~L~~n-~l~~l~~-l~~-l~~L~~L~l  358 (384)
T d2omza2         320 SDISP-VSSLTKLQRLFFANN-KVSDVSS-LAN-LTNINWLSA  358 (384)
T ss_dssp             SCCGG-GGGCTTCCEEECCSS-CCCCCGG-GGG-CTTCCEEEC
T ss_pred             CCCcc-cccCCCCCEEECCCC-CCCCChh-HcC-CCCCCEEEC
Confidence            55532 456899999999999 7888773 222 367776654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2.1e-08  Score=80.56  Aligned_cols=166  Identities=16%  Similarity=0.094  Sum_probs=102.4

Q ss_pred             cCCcceeEEeeehHHHH-HHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCc
Q 046682            8 KHLNVLSWSFGSSLAVQ-KFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQ   86 (236)
Q Consensus         8 ~~L~~L~i~~~~~~~l~-~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~   86 (236)
                      ++|++|+++......+. ..+  .. .++|+.|++.++.-..+  +....+++|+.|+++++.+..+.         ...
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f--~~-l~~L~~L~L~~N~l~~l--~~~~~l~~L~~L~Ls~N~l~~~~---------~~~   96 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATL--MP-YTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSLP---------LLG   96 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGG--TT-CTTCCEEECTTSCCCEE--ECCSCCTTCCEEECCSSCCSSCC---------CCT
T ss_pred             cCCCEEECcCCcCCCcCHHHh--hc-ccccccccccccccccc--ccccccccccccccccccccccc---------ccc
Confidence            46777776532221121 111  11 26899999998843333  44567899999999988554331         223


Q ss_pred             cCCCCccEEEEecCCCCCcch--hhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEecccccccc
Q 046682           87 SGFRSLDRVVISSCKKMKDLT--WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLK  164 (236)
Q Consensus        87 ~~l~~L~~L~i~~c~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~  164 (236)
                      ..+++|+.|+++++. +..+.  ....++++++|.+.++ .+..+..            .....+++|+.+.+++. +++
T Consensus        97 ~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~l~~n-~l~~l~~------------~~~~~l~~l~~l~l~~N-~l~  161 (266)
T d1p9ag_          97 QTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN-ELKTLPP------------GLLTPTPKLEKLSLANN-NLT  161 (266)
T ss_dssp             TTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS-CCCCCCT------------TTTTTCTTCCEEECTTS-CCS
T ss_pred             ccccccccccccccc-cceeecccccccccccccccccc-ccceecc------------ccccccccchhcccccc-ccc
Confidence            457889999998774 44432  2356788888888765 3444331            23345677888888764 566


Q ss_pred             ccCCCC-CCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682          165 SVYPNP-LPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI  204 (236)
Q Consensus       165 ~i~~~~-~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  204 (236)
                      .+..+. ..+++|++|++++. +|+.+|.+.... .+|+.+
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N-~L~~lp~~~~~~-~~L~~L  200 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGS-HLLPFA  200 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT-CCCSEE
T ss_pred             ccCccccccccccceeecccC-CCcccChhHCCC-CCCCEE
Confidence            665543 35778888888887 477887664432 444444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.7e-07  Score=75.11  Aligned_cols=147  Identities=20%  Similarity=0.257  Sum_probs=104.2

Q ss_pred             ccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch-hhh
Q 046682           32 LVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT-WLV  110 (236)
Q Consensus        32 l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~-~l~  110 (236)
                      +++.++.|+|++..-..+....+..+++|++|+++++.++.+..          ...+++|+.|+++++ ++...+ .+.
T Consensus        29 lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~----------~~~l~~L~~L~Ls~N-~l~~~~~~~~   97 (266)
T d1p9ag_          29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV----------DGTLPVLGTLDLSHN-QLQSLPLLGQ   97 (266)
T ss_dssp             CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC----------CSCCTTCCEEECCSS-CCSSCCCCTT
T ss_pred             cCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc----------ccccccccccccccc-cccccccccc
Confidence            45789999999875444433457889999999999997776632          245889999999987 566543 356


Q ss_pred             cccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCCC-CCCCCccEEeEeCCCCCCC
Q 046682          111 FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNP-LPLPKLKKIQVRGCPQLKK  189 (236)
Q Consensus       111 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~~  189 (236)
                      .+++|+.|+++++... .+..            .....++++++|.+.+. .++.++... ..+++|+.+.+.++ +++.
T Consensus        98 ~l~~L~~L~l~~~~~~-~~~~------------~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N-~l~~  162 (266)
T d1p9ag_          98 TLPALTVLDVSFNRLT-SLPL------------GALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTE  162 (266)
T ss_dssp             TCTTCCEEECCSSCCC-CCCS------------STTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSC
T ss_pred             cccccccccccccccc-eeec------------ccccccccccccccccc-ccceeccccccccccchhcccccc-cccc
Confidence            7899999999876432 2221            24457789999999865 556665543 35889999999997 7888


Q ss_pred             cCCCCCCCCCcceEE
Q 046682          190 LPVNSSSVKERRVVI  204 (236)
Q Consensus       190 lp~~~~~~~~~l~~~  204 (236)
                      +|.+......+|+.+
T Consensus       163 ~~~~~~~~l~~L~~L  177 (266)
T d1p9ag_         163 LPAGLLNGLENLDTL  177 (266)
T ss_dssp             CCTTTTTTCTTCCEE
T ss_pred             cCcccccccccccee
Confidence            886543323455544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.64  E-value=9.8e-08  Score=77.70  Aligned_cols=179  Identities=13%  Similarity=0.067  Sum_probs=106.6

Q ss_pred             cCCcceeEEeeehHHHHHHhc-CCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeeccccc------
Q 046682            8 KHLNVLSWSFGSSLAVQKFLK-YPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEE------   80 (236)
Q Consensus         8 ~~L~~L~i~~~~~~~l~~l~~-~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~------   80 (236)
                      .++++|+++...   ++.+.. ...-.++|+.|.+.++.-..+....+.++++|+.|.++++.++.+.......      
T Consensus        31 ~~l~~L~Ls~N~---i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~  107 (305)
T d1xkua_          31 PDTALLDLQNNK---ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV  107 (305)
T ss_dssp             TTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEEC
T ss_pred             CCCCEEECcCCc---CCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhc
Confidence            557777766432   222221 1112267888888888655443334677888888888876444332111000      


Q ss_pred             -----cc----------------------------ccCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccc
Q 046682           81 -----VK----------------------------KLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEME  127 (236)
Q Consensus        81 -----~~----------------------------~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~  127 (236)
                           ..                            ......+++|+.+.+.++ ++..++. ..+++|++|++.++....
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~-~~~~~L~~L~l~~n~~~~  185 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQ-GLPPSLTELHLDGNKITK  185 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCS-SCCTTCSEEECTTSCCCE
T ss_pred             cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC-CccccCc-ccCCccCEEECCCCcCCC
Confidence                 00                            011234567888888776 4555532 346788888887765443


Q ss_pred             eecccccc---c--------cccccccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCC
Q 046682          128 EIISVDKL---R--------DISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVN  193 (236)
Q Consensus       128 ~i~~~~~~---~--------~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~  193 (236)
                      ........   .        ...+.....+..+++|++|+++++ +++.++.+...+++|++|+++++ +++.++..
T Consensus       186 ~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~  260 (305)
T d1xkua_         186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSN  260 (305)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred             CChhHhhccccccccccccccccccccccccccccceeeecccc-cccccccccccccCCCEEECCCC-ccCccChh
Confidence            32211000   0        001111134567899999999998 78888776777999999999997 79998753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=5.3e-08  Score=72.61  Aligned_cols=103  Identities=12%  Similarity=0.083  Sum_probs=67.7

Q ss_pred             ccceEEEEeccCCCCccccc-hhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hh
Q 046682           34 SITQFVLVYHCKSAPFNLLH-LAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LV  110 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~-l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~  110 (236)
                      ..+|.|+++++.-..+  +. ...+++|+.|+++++.++++.          ....+++|+.|+++++ +++.++.  ..
T Consensus        18 ~~lr~L~L~~n~I~~i--~~~~~~l~~L~~L~Ls~N~i~~l~----------~~~~l~~L~~L~ls~N-~i~~l~~~~~~   84 (162)
T d1a9na_          18 VRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKLD----------GFPLLRRLKTLLVNNN-RICRIGEGLDQ   84 (162)
T ss_dssp             TSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCEEC----------CCCCCSSCCEEECCSS-CCCEECSCHHH
T ss_pred             CcCcEEECCCCCCCcc--CccccccccCCEEECCCCCCCccC----------CcccCcchhhhhcccc-cccCCCccccc
Confidence            4678888888754444  33 356788888888888666551          2345788888888887 5776643  34


Q ss_pred             cccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682          111 FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR  161 (236)
Q Consensus       111 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  161 (236)
                      .+|+|++|++.++. ++.+..         .  ..+..+|+|++|++.+++
T Consensus        85 ~l~~L~~L~L~~N~-i~~~~~---------l--~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          85 ALPDLTELILTNNS-LVELGD---------L--DPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             HCTTCCEEECCSCC-CCCGGG---------G--GGGGGCTTCCEEECCSSG
T ss_pred             cccccccceecccc-cccccc---------c--cccccccccchhhcCCCc
Confidence            68888888887762 332211         0  234567888888887764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.59  E-value=9.3e-08  Score=68.05  Aligned_cols=118  Identities=15%  Similarity=0.157  Sum_probs=78.3

Q ss_pred             eEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhcccCcc
Q 046682           37 QFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILK  116 (236)
Q Consensus        37 ~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~  116 (236)
                      |.|++++..-..+  +.+..+++|++|+++++.+..++         +....+++|+.|++++. .++.++.+..+|+|+
T Consensus         1 R~L~Ls~n~l~~l--~~l~~l~~L~~L~ls~N~l~~lp---------~~~~~l~~L~~L~l~~N-~i~~l~~~~~l~~L~   68 (124)
T d1dcea3           1 RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALP---------PALAALRCLEVLQASDN-ALENVDGVANLPRLQ   68 (124)
T ss_dssp             SEEECTTSCCSSC--CCGGGGTTCCEEECCSSCCCCCC---------GGGGGCTTCCEEECCSS-CCCCCGGGTTCSSCC
T ss_pred             CEEEcCCCCCCCC--cccccCCCCCEEECCCCccCcch---------hhhhhhhcccccccccc-cccccCccccccccC
Confidence            4566666643333  56788899999999888666552         22356889999999886 788888788899999


Q ss_pred             EEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCC----CCCCCCccEE
Q 046682          117 QLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN----PLPLPKLKKI  179 (236)
Q Consensus       117 ~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~----~~~~p~L~~L  179 (236)
                      +|++++. .+..+...           ..+..+|+|+.|++++-+ +..+...    ...+|+|+.|
T Consensus        69 ~L~l~~N-~i~~~~~~-----------~~l~~~~~L~~L~l~~N~-i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          69 ELLLCNN-RLQQSAAI-----------QPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             EEECCSS-CCCSSSTT-----------GGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred             eEECCCC-ccCCCCCc-----------hhhcCCCCCCEEECCCCc-CCcCccHHHHHHHHCcCcceE
Confidence            9999875 33333210           245578899999997632 2222211    1236777665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=8.4e-08  Score=71.50  Aligned_cols=128  Identities=14%  Similarity=0.120  Sum_probs=89.7

Q ss_pred             hhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccc
Q 046682           54 LAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVD  133 (236)
Q Consensus        54 l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~  133 (236)
                      +.+...|++|+++++.+..+.  .       ....+++|+.|+++++ .++.+..+..+++|++|++++|. ++.+..  
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~--~-------~~~~l~~L~~L~Ls~N-~i~~l~~~~~l~~L~~L~ls~N~-i~~l~~--   80 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIE--N-------LGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNR-ICRIGE--   80 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCC--C-------GGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSC-CCEECS--
T ss_pred             ccCcCcCcEEECCCCCCCccC--c-------cccccccCCEEECCCC-CCCccCCcccCcchhhhhccccc-ccCCCc--
Confidence            455678999999999666552  1       1135789999999997 68888777889999999999884 665542  


Q ss_pred             ccccccccccccccccCcccEEeccccccccccCC--CCCCCCCccEEeEeCCCCCCCcCCCCC---CCCCcceEEec
Q 046682          134 KLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP--NPLPLPKLKKIQVRGCPQLKKLPVNSS---SVKERRVVIEG  206 (236)
Q Consensus       134 ~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~--~~~~~p~L~~L~i~~C~~L~~lp~~~~---~~~~~l~~~~~  206 (236)
                                .....+|+|+.|++.++. ++.+..  ....+|+|+.|.+.+|| +..+|....   ...++|+.+++
T Consensus        81 ----------~~~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          81 ----------GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             ----------CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ----------cccccccccccceecccc-ccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCC
Confidence                      123468999999998753 333322  23468999999999995 556664211   11267777754

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.47  E-value=2.2e-07  Score=75.53  Aligned_cols=125  Identities=10%  Similarity=0.141  Sum_probs=73.9

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch--hhhc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT--WLVF  111 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--~l~~  111 (236)
                      ..|+.+.+.++.-..+.   ....++|++|++.++.......        .....+++++.|.++++ .+..+.  ++..
T Consensus       150 ~~L~~l~l~~n~l~~l~---~~~~~~L~~L~l~~n~~~~~~~--------~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~  217 (305)
T d1xkua_         150 KKLSYIRIADTNITTIP---QGLPPSLTELHLDGNKITKVDA--------ASLKGLNNLAKLGLSFN-SISAVDNGSLAN  217 (305)
T ss_dssp             TTCCEEECCSSCCCSCC---SSCCTTCSEEECTTSCCCEECT--------GGGTTCTTCCEEECCSS-CCCEECTTTGGG
T ss_pred             cccCccccccCCccccC---cccCCccCEEECCCCcCCCCCh--------hHhhccccccccccccc-cccccccccccc
Confidence            46677777766433221   1234677788877772222211        12234567777777776 555542  3456


Q ss_pred             ccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCCC-------CCCCCccEEeEeCC
Q 046682          112 VQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNP-------LPLPKLKKIQVRGC  184 (236)
Q Consensus       112 lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~-------~~~p~L~~L~i~~C  184 (236)
                      +++|++|+++++ .++.+.             ..+..+++|++|++++. +++.+....       ...++|+.|.+.+.
T Consensus       218 l~~L~~L~L~~N-~L~~lp-------------~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N  282 (305)
T d1xkua_         218 TPHLRELHLNNN-KLVKVP-------------GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSN  282 (305)
T ss_dssp             STTCCEEECCSS-CCSSCC-------------TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred             cccceeeecccc-cccccc-------------cccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCC
Confidence            778888888777 455443             23456778888888774 466664322       13467777877776


Q ss_pred             C
Q 046682          185 P  185 (236)
Q Consensus       185 ~  185 (236)
                      |
T Consensus       283 ~  283 (305)
T d1xkua_         283 P  283 (305)
T ss_dssp             S
T ss_pred             c
Confidence            5

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=4.6e-07  Score=72.98  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=65.0

Q ss_pred             hhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceecc
Q 046682           54 LAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIIS  131 (236)
Q Consensus        54 l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~  131 (236)
                      +.++++|+.|++.++.+..+..        .....+++|+.+++.+. .++.++.  +..+++|++|+++++ +++.+..
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~--------~~~~~~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~  170 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGP--------GLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPE  170 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCT--------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECT
T ss_pred             hcccccCCEEecCCcccccccc--------cccchhcccchhhhccc-cccccChhHhccccchhhcccccC-cccccch
Confidence            3445556666665553222211        12234556677766654 4555532  345667777777665 4544432


Q ss_pred             ccccccccccccccccccCcccEEeccccccccccC-CCCCCCCCccEEeEeCCCCCCCcCC
Q 046682          132 VDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVY-PNPLPLPKLKKIQVRGCPQLKKLPV  192 (236)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~-~~~~~~p~L~~L~i~~C~~L~~lp~  192 (236)
                                  ..+..+++|+++.+.+.. +..+. .....+++|+.|+++++ ++..+|.
T Consensus       171 ------------~~f~~l~~L~~l~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N-~i~~~~~  218 (284)
T d1ozna_         171 ------------RAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN-NLSALPT  218 (284)
T ss_dssp             ------------TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCH
T ss_pred             ------------hhhccccccchhhhhhcc-ccccChhHhhhhhhccccccccc-ccccccc
Confidence                        234567888888887654 33443 34456788899988886 4555553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.38  E-value=1.2e-09  Score=84.49  Aligned_cols=105  Identities=19%  Similarity=0.284  Sum_probs=50.6

Q ss_pred             hhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhh-cccCccEEeEecccccceeccc
Q 046682           54 LAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLV-FVQILKQLRIVFCTEMEEIISV  132 (236)
Q Consensus        54 l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~-~lp~L~~L~i~~C~~L~~i~~~  132 (236)
                      +..+++|++|++++++++.+.          +...+++|+.|+++++ .++.++.+. .+++|++|+++++ .++.+.  
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~----------~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N-~i~~l~--  109 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKIS----------SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS--  109 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCC----------CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEE-ECCCHH--
T ss_pred             HhcccccceeECcccCCCCcc----------cccCCccccChhhccc-ccccccccccccccccccccccc-cccccc--
Confidence            555666666666655444331          1233556666666655 355543322 3445666666554 333321  


Q ss_pred             cccccccccccccccccCcccEEeccccccccccCC--CCCCCCCccEEeEeCCC
Q 046682          133 DKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP--NPLPLPKLKKIQVRGCP  185 (236)
Q Consensus       133 ~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~--~~~~~p~L~~L~i~~C~  185 (236)
                                  .+..+++|+.|++++.. ++.+..  ....+|+|+.|.+.++|
T Consensus       110 ------------~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         110 ------------GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             ------------HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ------------cccccccccccccccch-hccccccccccCCCccceeecCCCc
Confidence                        23345566666665431 222111  12245666666666553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=4.4e-06  Score=67.01  Aligned_cols=167  Identities=13%  Similarity=0.133  Sum_probs=90.9

Q ss_pred             ehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccc-----------------
Q 046682           19 SSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEV-----------------   81 (236)
Q Consensus        19 ~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~-----------------   81 (236)
                      +..+++.+..  .+++.++.|.|++..-..++...+.++++|++|+++++.+..+........                 
T Consensus        19 ~~~~L~~iP~--~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l   96 (284)
T d1ozna_          19 PQQGLQAVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV   96 (284)
T ss_dssp             CSSCCSSCCT--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred             CCCCCCccCC--CCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccc
Confidence            3333444432  245789999999885444543457889999999999875554432111100                 


Q ss_pred             cccCccCCCCccEEEEecCCCCCcch--hhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccc
Q 046682           82 KKLFQSGFRSLDRVVISSCKKMKDLT--WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKW  159 (236)
Q Consensus        82 ~~~~~~~l~~L~~L~i~~c~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~  159 (236)
                      .+.....+++|+.|++.++. +..+.  ....+++|+.+++.+. +++.+..            ..+..+++|+.|.+.+
T Consensus        97 ~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N-~l~~i~~------------~~f~~~~~L~~L~l~~  162 (284)
T d1ozna_          97 DPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDN-ALQALPD------------DTFRDLGNLTHLFLHG  162 (284)
T ss_dssp             CTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCS
T ss_pred             cchhhcccccCCEEecCCcc-cccccccccchhcccchhhhccc-cccccCh------------hHhccccchhhccccc
Confidence            01112334445555554442 22221  1223444555544432 2322221            2345678899999987


Q ss_pred             cccccccCCCC-CCCCCccEEeEeCCCCCCCc-CCCCCCCCCcceEE
Q 046682          160 GRNLKSVYPNP-LPLPKLKKIQVRGCPQLKKL-PVNSSSVKERRVVI  204 (236)
Q Consensus       160 ~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~~l-p~~~~~~~~~l~~~  204 (236)
                      . +++.+.... ..+++|+.+.+.++. +..+ |..... .+++..+
T Consensus       163 N-~l~~l~~~~f~~l~~L~~l~l~~N~-l~~i~~~~f~~-l~~L~~L  206 (284)
T d1ozna_         163 N-RISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRD-LGRLMTL  206 (284)
T ss_dssp             S-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTT-CTTCCEE
T ss_pred             C-cccccchhhhccccccchhhhhhcc-ccccChhHhhh-hhhcccc
Confidence            6 577776644 357899999998884 4444 433322 2445444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.5e-06  Score=67.90  Aligned_cols=83  Identities=13%  Similarity=0.157  Sum_probs=43.8

Q ss_pred             cCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCC-ccccchhhcccCCceeecCC-ccceeeecccccccccC
Q 046682            8 KHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAP-FNLLHLAYMENLQELDLEDI-NLEEMKIDSTEEVKKLF   85 (236)
Q Consensus         8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~-~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~   85 (236)
                      .++++|+++......+..- .+.. .++|+.|++.++.... ++...+..++++++|.+..+ ++..+..+.        
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~-~f~~-l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~--------   98 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKG-AFSG-FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA--------   98 (242)
T ss_dssp             SCCSEEEEESCCCCEECTT-TTTT-CTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS--------
T ss_pred             CCCCEEECcCCcCCccChh-Hhhc-cchhhhhhhccccccceeecccccccccccccccccccccccccccc--------
Confidence            3677788764332222110 1122 2678888888875422 22233566777777777766 655442211        


Q ss_pred             ccCCCCccEEEEecC
Q 046682           86 QSGFRSLDRVVISSC  100 (236)
Q Consensus        86 ~~~l~~L~~L~i~~c  100 (236)
                      ...+++|+.+.+.++
T Consensus        99 ~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          99 FQNLPNLQYLLISNT  113 (242)
T ss_dssp             EECCTTCCEEEEESC
T ss_pred             ccccccccccccchh
Confidence            123455555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.3e-05  Score=60.90  Aligned_cols=85  Identities=14%  Similarity=0.080  Sum_probs=61.8

Q ss_pred             ccccceEEEEeccCCCCccccchhhcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--
Q 046682           32 LVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--  108 (236)
Q Consensus        32 l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--  108 (236)
                      ++.+++.|++.+..-..+....+.++++|++|+++++ ....+...        ....+++++++.+..+.++..+..  
T Consensus        27 l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~--------~f~~l~~l~~l~~~~~n~l~~~~~~~   98 (242)
T d1xwdc1          27 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD--------VFSNLPKLHEIRIEKANNLLYINPEA   98 (242)
T ss_dssp             SCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSS--------SEESCTTCCEEEEECCTTCCEECTTS
T ss_pred             CCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecc--------cccccccccccccccccccccccccc
Confidence            3468999999987544443234788999999999999 44433221        224578899999988888776543  


Q ss_pred             hhcccCccEEeEeccc
Q 046682          109 LVFVQILKQLRIVFCT  124 (236)
Q Consensus       109 l~~lp~L~~L~i~~C~  124 (236)
                      +..+++|+++.+.++.
T Consensus        99 ~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTG  114 (242)
T ss_dssp             EECCTTCCEEEEESCC
T ss_pred             ccccccccccccchhh
Confidence            4678999999998863

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.20  E-value=8.9e-07  Score=72.15  Aligned_cols=62  Identities=19%  Similarity=0.195  Sum_probs=33.1

Q ss_pred             cccccCcCCcceeEEeeehH--HHH-HHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecC
Q 046682            2 KELLGLKHLNVLSWSFGSSL--AVQ-KFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLED   67 (236)
Q Consensus         2 ~eL~~L~~L~~L~i~~~~~~--~l~-~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~   67 (236)
                      .++..|++|++|++..+...  .++ .+.   . .++|+.|+++++.-.......+..+.+|+.+.+.+
T Consensus        70 ~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~---~-L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~  134 (313)
T d1ogqa_          70 SSLANLPYLNFLYIGGINNLVGPIPPAIA---K-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY  134 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESCCCGGGG---G-CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred             hHHhcCccccccccccccccccccccccc---c-ccccchhhhccccccccccccccchhhhccccccc
Confidence            36778899999998743211  121 121   1 26888888888753222112233444445444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.08  E-value=2.4e-05  Score=63.51  Aligned_cols=33  Identities=18%  Similarity=0.107  Sum_probs=16.9

Q ss_pred             CCcceeEEeeehHHHHHHhcCCcccccceEEEEeccC
Q 046682            9 HLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCK   45 (236)
Q Consensus         9 ~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~   45 (236)
                      .|++|+++...   +..+.... ..+.|+.|.+.++.
T Consensus        99 ~L~~L~L~~n~---l~~lp~~~-~l~~L~~L~l~~~~  131 (353)
T d1jl5a_          99 LLEYLGVSNNQ---LEKLPELQ-NSSFLKIIDVDNNS  131 (353)
T ss_dssp             TCCEEECCSSC---CSSCCCCT-TCTTCCEEECCSSC
T ss_pred             ccccccccccc---cccccchh-hhccceeecccccc
Confidence            46666665332   22222222 23577777777664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.05  E-value=9.2e-08  Score=73.62  Aligned_cols=104  Identities=16%  Similarity=0.142  Sum_probs=77.1

Q ss_pred             ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhccc
Q 046682           34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQ  113 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp  113 (236)
                      ++|+.|+++++.-..+  ..+..+++|+.|++++|.+.++..         ....+++|+.|++.++ .++.++.+..++
T Consensus        48 ~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~~i~~---------~~~~~~~L~~L~l~~N-~i~~l~~~~~l~  115 (198)
T d1m9la_          48 KACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIEN---------LDAVADTLEELWISYN-QIASLSGIEKLV  115 (198)
T ss_dssp             TTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEECSCSS---------HHHHHHHCCEEECSEE-ECCCHHHHHHHH
T ss_pred             cccceeECcccCCCCc--ccccCCccccChhhcccccccccc---------cccccccccccccccc-cccccccccccc
Confidence            6899999988853444  568899999999999986555421         1123568999999887 688887788899


Q ss_pred             CccEEeEecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682          114 ILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR  161 (236)
Q Consensus       114 ~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  161 (236)
                      +|++|+++++ .++.+..         .  ..+..+|+|+.|++++.+
T Consensus       116 ~L~~L~L~~N-~i~~~~~---------~--~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         116 NLRVLYMSNN-KITNWGE---------I--DKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HSSEEEESEE-ECCCHHH---------H--HHHTTTTTCSEEEECSSH
T ss_pred             cccccccccc-hhccccc---------c--ccccCCCccceeecCCCc
Confidence            9999999876 3333321         0  245678999999999865

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.00  E-value=1.1e-05  Score=65.44  Aligned_cols=103  Identities=15%  Similarity=0.148  Sum_probs=61.1

Q ss_pred             cceEEEEeccCCC-Cccc-cchhhcccCCceeecCC-ccc-eeeecccccccccCccCCCCccEEEEecCCCCCcch--h
Q 046682           35 ITQFVLVYHCKSA-PFNL-LHLAYMENLQELDLEDI-NLE-EMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT--W  108 (236)
Q Consensus        35 ~L~~L~l~~c~~~-~~~~-~~l~~l~~L~~L~i~~c-~le-~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--~  108 (236)
                      +++.|++.++.-. ...+ ..+.++++|++|++++| ++. .+         +.....+++|+.|+++++ ++..+.  .
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~i---------P~~i~~L~~L~~L~Ls~N-~l~~~~~~~  120 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI---------PPAIAKLTQLHYLYITHT-NVSGAIPDF  120 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCC---------CGGGGGCTTCSEEEEEEE-CCEEECCGG
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccc---------ccccccccccchhhhccc-ccccccccc
Confidence            5777888777432 1111 45777888888888876 554 23         234456778888888777 455432  2


Q ss_pred             hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEecccc
Q 046682          109 LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWG  160 (236)
Q Consensus       109 l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~  160 (236)
                      ...+++|+.+++.++.....++             ..+..+++|+.+.+.+.
T Consensus       121 ~~~~~~L~~l~l~~N~~~~~~p-------------~~l~~l~~L~~l~l~~n  159 (313)
T d1ogqa_         121 LSQIKTLVTLDFSYNALSGTLP-------------PSISSLPNLVGITFDGN  159 (313)
T ss_dssp             GGGCTTCCEEECCSSEEESCCC-------------GGGGGCTTCCEEECCSS
T ss_pred             ccchhhhcccccccccccccCc-------------hhhccCcccceeecccc
Confidence            4466777777777654433322             23345556666665544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.00  E-value=8.5e-06  Score=57.46  Aligned_cols=96  Identities=16%  Similarity=0.206  Sum_probs=67.4

Q ss_pred             CceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch-hhhcccCccEEeEecccccceecccccccccc
Q 046682           61 QELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT-WLVFVQILKQLRIVFCTEMEEIISVDKLRDIS  139 (236)
Q Consensus        61 ~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~  139 (236)
                      |.|+++++++..+          +....+++|++|++++. +++.++ .+..+++|++|++++. .++.+.         
T Consensus         1 R~L~Ls~n~l~~l----------~~l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~---------   59 (124)
T d1dcea3           1 RVLHLAHKDLTVL----------CHLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD---------   59 (124)
T ss_dssp             SEEECTTSCCSSC----------CCGGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG---------
T ss_pred             CEEEcCCCCCCCC----------cccccCCCCCEEECCCC-ccCcchhhhhhhhcccccccccc-cccccC---------
Confidence            4567777755544          23456889999999876 788885 4678999999999874 455432         


Q ss_pred             ccccccccccCcccEEeccccccccccCC--CCCCCCCccEEeEeC
Q 046682          140 EIIGSEHNFFAQLESLTIKWGRNLKSVYP--NPLPLPKLKKIQVRG  183 (236)
Q Consensus       140 ~~~~~~~~~~p~L~~L~l~~~~~L~~i~~--~~~~~p~L~~L~i~~  183 (236)
                           .+..+|+|++|++.+. .++.++.  ....+|+|+.|++++
T Consensus        60 -----~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          60 -----GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             -----GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             -----ccccccccCeEECCCC-ccCCCCCchhhcCCCCCCEEECCC
Confidence                 4557899999999764 3333332  234578899998876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.95  E-value=2.1e-05  Score=59.39  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=15.1

Q ss_pred             ccCcccEEeccccccccccCCCC-CCCCCccEEeEe
Q 046682          148 FFAQLESLTIKWGRNLKSVYPNP-LPLPKLKKIQVR  182 (236)
Q Consensus       148 ~~p~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~  182 (236)
                      .+++|++|+|++. .++.+..+. ..+++|++|.+.
T Consensus       100 ~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~  134 (192)
T d1w8aa_         100 GLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECT
T ss_pred             CCCcccccccCCc-cccccCHHHhcCCccccccccc
Confidence            4455555555442 344444332 234445544443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.84  E-value=5e-05  Score=57.19  Aligned_cols=108  Identities=14%  Similarity=0.170  Sum_probs=76.5

Q ss_pred             ccccceEEEEeccCCCC-ccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--
Q 046682           32 LVSITQFVLVYHCKSAP-FNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--  108 (236)
Q Consensus        32 l~~~L~~L~l~~c~~~~-~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--  108 (236)
                      ++..++.|+|++..-.. .....+..+++|+.|+++++.+..+..+        ....+++|+.|++++. +++.++.  
T Consensus        27 lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~--------~~~~~~~L~~L~Ls~N-~l~~l~~~~   97 (192)
T d1w8aa_          27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN--------AFEGASHIQELQLGEN-KIKEISNKM   97 (192)
T ss_dssp             CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT--------TTTTCTTCCEEECCSC-CCCEECSSS
T ss_pred             CCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccc--------ccccccccceeeeccc-cccccCHHH
Confidence            45688999998875432 3224467889999999988855544321        2345788999999877 6777653  


Q ss_pred             hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682          109 LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR  161 (236)
Q Consensus       109 l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  161 (236)
                      +..+++|++|++++. .++.+..            ..+..+++|++|++.+-+
T Consensus        98 F~~l~~L~~L~L~~N-~l~~i~~------------~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          98 FLGLHQLKTLNLYDN-QISCVMP------------GSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             STTCTTCCEEECCSS-CCCEECT------------TSSTTCTTCCEEECTTCC
T ss_pred             HhCCCcccccccCCc-cccccCH------------HHhcCCcccccccccccc
Confidence            567899999999875 5666542            245578899999997643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00019  Score=52.22  Aligned_cols=60  Identities=25%  Similarity=0.375  Sum_probs=31.1

Q ss_pred             hhhcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEec
Q 046682           54 LAYMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVF  122 (236)
Q Consensus        54 l~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~  122 (236)
                      +..+++|++|++.+. .++.+..+        ....+++|+.|++++. +++.+..  +..+++|++|++++
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~--------~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELR--------DLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGG--------GSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred             ccCccccCeeecCCCccccccCch--------hhccccccCcceeecc-ccCCcccccccccccccceeccC
Confidence            445556666666555 55554321        1233556666666555 4555432  34555666666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.29  E-value=0.0012  Score=52.95  Aligned_cols=70  Identities=16%  Similarity=0.116  Sum_probs=34.1

Q ss_pred             cceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhcccC
Q 046682           35 ITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQI  114 (236)
Q Consensus        35 ~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~  114 (236)
                      +++.|+++++.=..+  +.  ..++|++|.++++++++++            ..+.+|+.|++.++ +++.++.+  .++
T Consensus        39 ~l~~LdLs~~~L~~l--p~--~~~~L~~L~Ls~N~l~~lp------------~~~~~L~~L~l~~n-~l~~l~~l--p~~   99 (353)
T d1jl5a_          39 QAHELELNNLGLSSL--PE--LPPHLESLVASCNSLTELP------------ELPQSLKSLLVDNN-NLKALSDL--PPL   99 (353)
T ss_dssp             TCSEEECTTSCCSCC--CS--CCTTCSEEECCSSCCSSCC------------CCCTTCCEEECCSS-CCSCCCSC--CTT
T ss_pred             CCCEEEeCCCCCCCC--CC--CCCCCCEEECCCCCCcccc------------cchhhhhhhhhhhc-ccchhhhh--ccc
Confidence            456666666532222  22  2356666666654555442            12345666666554 34433221  234


Q ss_pred             ccEEeEecc
Q 046682          115 LKQLRIVFC  123 (236)
Q Consensus       115 L~~L~i~~C  123 (236)
                      |++|+++++
T Consensus       100 L~~L~L~~n  108 (353)
T d1jl5a_         100 LEYLGVSNN  108 (353)
T ss_dssp             CCEEECCSS
T ss_pred             ccccccccc
Confidence            666666544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.0013  Score=47.54  Aligned_cols=84  Identities=19%  Similarity=0.285  Sum_probs=53.7

Q ss_pred             ccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccc
Q 046682           86 QSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNL  163 (236)
Q Consensus        86 ~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L  163 (236)
                      ...+++|++|+|.+...++.++.  +..+++|+.|+++++ +++.+..            ..+..+++|++|+|++- ++
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~------------~~f~~l~~L~~L~Ls~N-~l   92 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAP------------DAFHFTPRLSRLNLSFN-AL   92 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECT------------TGGGSCSCCCEEECCSS-CC
T ss_pred             ccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCccc------------ccccccccccceeccCC-CC
Confidence            34567788888876666776643  456778888888765 4555432            23456778888888653 36


Q ss_pred             cccCCCCCCCCCccEEeEeC
Q 046682          164 KSVYPNPLPLPKLKKIQVRG  183 (236)
Q Consensus       164 ~~i~~~~~~~p~L~~L~i~~  183 (236)
                      +.++.+.+...+|+.|++.+
T Consensus        93 ~~l~~~~~~~~~l~~L~L~~  112 (156)
T d2ifga3          93 ESLSWKTVQGLSLQELVLSG  112 (156)
T ss_dssp             SCCCSTTTCSCCCCEEECCS
T ss_pred             cccChhhhccccccccccCC
Confidence            66666555555677776654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.04  E-value=0.0009  Score=54.38  Aligned_cols=12  Identities=8%  Similarity=0.022  Sum_probs=7.3

Q ss_pred             CCCccEEeEeCC
Q 046682          173 LPKLKKIQVRGC  184 (236)
Q Consensus       173 ~p~L~~L~i~~C  184 (236)
                      .++|++|+++++
T Consensus       272 ~~~L~~L~ls~N  283 (344)
T d2ca6a1         272 NIGLQTLRLQYN  283 (344)
T ss_dssp             SCCCCEEECCSS
T ss_pred             CCCCCEEECCCC
Confidence            455666666665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.69  E-value=0.0049  Score=49.82  Aligned_cols=68  Identities=10%  Similarity=0.138  Sum_probs=35.6

Q ss_pred             hcccCccEEeEecccccceeccccccccccccccccccccCcccEEecccccc----ccccCCCCCCCCCccEEeEeCCC
Q 046682          110 VFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRN----LKSVYPNPLPLPKLKKIQVRGCP  185 (236)
Q Consensus       110 ~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~----L~~i~~~~~~~p~L~~L~i~~C~  185 (236)
                      ...++|++|++++|. +..-   .......    ..+...++|+.|++++.+-    .+.+.......++|++|.+.+|.
T Consensus       183 ~~~~~L~~L~L~~n~-i~~~---g~~~~l~----~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNG-IRPE---GIEHLLL----EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             HHCTTCCEEECCSSC-CCHH---HHHHHHH----TTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             hhhhhhccccccccc-cccc---ccccchh----hhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc
Confidence            356778888887763 2110   0000000    2344677888888876531    11121122346778888888874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=0.0052  Score=50.71  Aligned_cols=108  Identities=14%  Similarity=0.142  Sum_probs=64.6

Q ss_pred             CCcceeEEeee--hHHHHHHhcCCcccccceEEEEeccCCCCccc----cchhhcccCCceeecCCccceeeeccccccc
Q 046682            9 HLNVLSWSFGS--SLAVQKFLKYPKLVSITQFVLVYHCKSAPFNL----LHLAYMENLQELDLEDINLEEMKIDSTEEVK   82 (236)
Q Consensus         9 ~L~~L~i~~~~--~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~----~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~   82 (236)
                      +|+.|+++...  ...+.++.+.   .++++.|++.+|.-....+    ..+..+++|++|+++++.+.+..+....   
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~---l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~---   76 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPL---LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL---   76 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHH---HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH---
T ss_pred             CCCEEEeeCCcCChHHHHHHHHh---CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHH---
Confidence            57788887432  2233444322   3689999999994211111    1246788999999998844321100000   


Q ss_pred             ccCc-cCCCCccEEEEecCCCCCcch------hhhcccCccEEeEeccc
Q 046682           83 KLFQ-SGFRSLDRVVISSCKKMKDLT------WLVFVQILKQLRIVFCT  124 (236)
Q Consensus        83 ~~~~-~~l~~L~~L~i~~c~~l~~l~------~l~~lp~L~~L~i~~C~  124 (236)
                       ... ...++|++|++++| .+++..      .+..+++|++|+++++.
T Consensus        77 -~~l~~~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          77 -QGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             -HTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             -HHHhcCCCCCCEEECCCC-Cccccccccccchhhcccccccccccccc
Confidence             000 12347999999999 476532      23467899999998764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.86  E-value=0.0053  Score=44.40  Aligned_cols=13  Identities=23%  Similarity=0.401  Sum_probs=6.5

Q ss_pred             cccCCceeecCCc
Q 046682           57 MENLQELDLEDIN   69 (236)
Q Consensus        57 l~~L~~L~i~~c~   69 (236)
                      +++|+.|+++++.
T Consensus        64 ~~~L~~L~Ls~N~   76 (162)
T d1koha1          64 IPELLSLNLSNNR   76 (162)
T ss_dssp             CTTCCCCCCCSSC
T ss_pred             CCCCCEeeCCCcc
Confidence            4455555555553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.70  E-value=0.049  Score=38.95  Aligned_cols=60  Identities=17%  Similarity=0.055  Sum_probs=37.8

Q ss_pred             CCCCccEEEEecCCCCCcchh----hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682           88 GFRSLDRVVISSCKKMKDLTW----LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR  161 (236)
Q Consensus        88 ~l~~L~~L~i~~c~~l~~l~~----l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  161 (236)
                      .+++|+.|++++. +++++..    +..+++|+.|++++. .++++...            ......+|+.|.+.+-|
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l------------~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSEREL------------DKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGH------------HHHTTCCCSSCCCTTST
T ss_pred             hCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccC-ccccchhh------------hhhhccccceeecCCCC
Confidence            4788999999887 6776643    346888999988864 34333210            11133467777777654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.21  E-value=0.11  Score=37.12  Aligned_cols=85  Identities=8%  Similarity=-0.006  Sum_probs=38.0

Q ss_pred             ccceEEEEeccCCCCc-----cccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch-
Q 046682           34 SITQFVLVYHCKSAPF-----NLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT-  107 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~-----~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~-  107 (236)
                      +.|+.|+|.++.....     ....+...++|++|.+++|.+..-.+...    .......++|++|+|++| .+..-. 
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~l----a~~L~~n~~L~~L~L~~n-~i~~~g~   89 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL----IELIETSPSLRVLNVESN-FLTPELL   89 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTH----HHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHH----hhhhhhcccccceeeehh-hcchHHH
Confidence            3666677765532111     00123444566677766663221100000    001122355677777666 344311 


Q ss_pred             -----hhhcccCccEEeEecc
Q 046682          108 -----WLVFVQILKQLRIVFC  123 (236)
Q Consensus       108 -----~l~~lp~L~~L~i~~C  123 (236)
                           .+...++|++|++.++
T Consensus        90 ~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          90 ARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHhCCcCCEEECCCC
Confidence                 1234456677666543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.59  E-value=0.081  Score=43.09  Aligned_cols=93  Identities=10%  Similarity=0.008  Sum_probs=49.8

Q ss_pred             cccCcCCcceeEEeee--hHHHHHHhcCCcccccceEEEEeccCCCCccccch----h-hcccCCceeecCCccceeeec
Q 046682            4 LLGLKHLNVLSWSFGS--SLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHL----A-YMENLQELDLEDINLEEMKID   76 (236)
Q Consensus         4 L~~L~~L~~L~i~~~~--~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l----~-~l~~L~~L~i~~c~le~l~~~   76 (236)
                      ++.+++|+.|++..+.  ..+++.+.....-.++|+.|+++++.-....+..+    . ...+|++|.+++|.+.+..+.
T Consensus        23 ~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~  102 (460)
T d1z7xw1          23 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  102 (460)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             HHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccc
Confidence            3557788888887653  23444443322223578999998774211100111    1 224788888888844322110


Q ss_pred             ccccccccCccCCCCccEEEEecC
Q 046682           77 STEEVKKLFQSGFRSLDRVVISSC  100 (236)
Q Consensus        77 ~~~~~~~~~~~~l~~L~~L~i~~c  100 (236)
                      ..    .......++|++|++.++
T Consensus       103 ~l----~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1         103 VL----SSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             HH----HHHTTSCTTCCEEECCSS
T ss_pred             cc----cchhhccccccccccccc
Confidence            00    012234678888888765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.28  E-value=0.12  Score=36.88  Aligned_cols=91  Identities=9%  Similarity=0.125  Sum_probs=51.0

Q ss_pred             hcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCCCCCcch------hhhcccCccEEeEecccccce
Q 046682           56 YMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT------WLVFVQILKQLRIVFCTEMEE  128 (236)
Q Consensus        56 ~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~------~l~~lp~L~~L~i~~C~~L~~  128 (236)
                      +.++|++|.++++ .+..-.+...    .......++|++|+|++| .+.+-.      .+...++|++|++++|. +..
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l----~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~   86 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSL----IEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF-LTP   86 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHH----HHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHH----HHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhh-cch
Confidence            4578999999876 4432110000    112234567999999887 455421      23456789999998873 322


Q ss_pred             eccccccccccccccccccccCcccEEecccc
Q 046682          129 IISVDKLRDISEIIGSEHNFFAQLESLTIKWG  160 (236)
Q Consensus       129 i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~  160 (236)
                      -.    .....    ..+..-++|++|++.+.
T Consensus        87 ~g----~~~l~----~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          87 EL----LARLL----RSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HH----HHHHH----HHTTTTCCCSEEECCCC
T ss_pred             HH----HHHHH----HHHHhCCcCCEEECCCC
Confidence            10    00000    13344577888888754

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=80.23  E-value=0.28  Score=34.65  Aligned_cols=85  Identities=12%  Similarity=-0.042  Sum_probs=41.1

Q ss_pred             ccceEEEEeccCCCCc-----cccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcc--
Q 046682           34 SITQFVLVYHCKSAPF-----NLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDL--  106 (236)
Q Consensus        34 ~~L~~L~l~~c~~~~~-----~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l--  106 (236)
                      +.|+.|++.++.....     ....+...++|++|.+++|.+..-.....    .......++++.+++.+|. +..-  
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L----~~~l~~~~~l~~l~l~~~~-~~~~g~   91 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL----AEMLKVNNTLKSLNVESNF-ISGSGI   91 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH----HHHHHHCSSCCEEECCSSC-CCHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHH----HHHHhhcccchhhhhcccc-ccchhH
Confidence            4677777776543111     01123456777777777773221100000    0011234567777776663 3221  


Q ss_pred             ----hhhhcccCccEEeEecc
Q 046682          107 ----TWLVFVQILKQLRIVFC  123 (236)
Q Consensus       107 ----~~l~~lp~L~~L~i~~C  123 (236)
                          ..+...++|+.++|..|
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~  112 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQ  112 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCC
T ss_pred             HHHHHHHHhCccccEEeeccC
Confidence                12345566777666544