Citrus Sinensis ID: 046696

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------61

MPEAPQNLLERAEHDGLVSDNNKKALKFIESVTSQADEVQDRVLAEILSCSANVEYLQRYGLNGHVDKGTFKKVMPVITYEDLKPYVDRIANGDCSPILCSQPISEFLTSSGTSGGERKLMPTIEEELERRSLLYSLLMPVVDQFVPGLDKGKAMYFLFIKSEAKTPGGLVARPVLTSYYKSSLFKDRPFDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQNLQVLRVGAVFASGFIRAIRFLEKHWPLLCNDIRKGTIDPKITDPSVREAVLKILKPNTQLADFIEAECSKESWKGIITRLWPNTKYIDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGLNLNPMCNPSEVSYTLLPTMAYFEFLPVNRKNGEPKSLKEDQQQVLDLTDVELGQEYELVVTTYAGLYRYRVGDILKVAGFKNKAPQFNFVCRKNVALSIDSDKTDEVELQNAVKNAANHLSPFDASLIEYTSYADTSTIPGRYVLFWEISQSGATQIPPSVFEDCCLSIEESLNSVYRQGRVSDKSIGPLEIKLVESGTFDKLMDYALSQGASINQYKTPRCVKYAPIIELLNSKVVSNYFSPKCPKWVPGQKQWCTEITK

ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHccccccccHHHHHHccccccccccHHHHHHHHcccccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccHHcccccccccHHHHHHHHHccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccEEEEEEEcccccccHHHHHHHcccccEEEcccccccEEEEEEccccccccccEEEEcccccEEEEEEcccccccccccccccccEEEccccccccEEEEEEEccccEEEcccccEEEEcEEEccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHccccccEEEEEEEEEccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccccccccccccEEEEEccccHHHHHHHHHHHcccccccccccEEEccHHHHHHHHcccccccccccccccccccccccccccc

ccccccHHHHccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHccccccccHHHHHHcccEEEHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEcccccccccEEccccEccccccHHHcccccccccccccccHEEEcccHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHccccEEEEEEEcccHHHHHHHHHHHcccccEEEccccccccEEEEEcccccccccEEEEEEcccEEEEEEEccccccccccccccccccEEEEEEEEccEEEEEEEEcccEEEEEEccEEEEEcccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHEccccccccEEEEEEcccHHHHHHHHHHHccccccccccccccccHHHHHHHHHcHHHHcccccccccccccccccHHccc

MPEAPQNLLEraehdglvsdnNKKALKFIESVTSQADEVQDRVLAEILSCSANVEYLQRyglnghvdkgtfkkvmpvityedlkpyvdriangdcspilcsqpisefltssgtsggerklmptIEEELERRSLLYSLLmpvvdqfvpgldkgkAMYFLFIKSeaktpgglvarpvltsyyksslfkdrpfdpytnytspnetilcpdsyqSMYSQMLCGLCQNLQVLRVGAVFASGFIRAIRFLEKHWPLLCndirkgtidpkitdpsVREAVLKILKPNTQLADFIEAECSKESWKGIItrlwpntkyIDVIVTGtmsqyiptldyysnglpLVCTMYAssecyfglnlnpmcnpsevsytllptmayfeflpvnrkngepkslkeDQQQVLDLTDVELGQEYELVVTTYAGLYRYRVGDILKVagfknkapqfnfvcrknvalsidsdktdEVELQNAVKNAanhlspfdaSLIEYtsyadtstipgrYVLFWEIsqsgatqippsvfeDCCLSIEESLNSVYrqgrvsdksigplEIKLVESGTFDKLMDYALSqgasinqyktprcvkyapiIELLnskvvsnyfspkcpkwvpgqkqwcteitk

MPEAPQNLLeraehdglvsdNNKKALKFIESVTSQADEVQDRVLAEILSCSANVEYLQRYGlnghvdkgtfkKVMPVITYEDLKPYVDRIANGDCSPILCSQPISEFltssgtsggerkLMPTIEEELERRSLLYSLLMPVVDQFVPGLDKGKAMYFLFIKSeaktpgglvarPVLTSYYKSslfkdrpfdpytnyTSPNETILCPDSYQSMYSQMLCGLCQNLQVLRVGAVFASGFIRAIRFLEKHWPLLCNDIRkgtidpkitdPSVREAVLKILKPNTQLADFieaecskeswkgiitrlwpntKYIDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGLNLNPMCNPSEVSYTLLPTMAYFEFLPVNRKNGEPKSLKEDQQQVLDLTDVELGQEYELVVTTYAGLYRYRVGDILKVAGfknkapqfnfvcRKNVALSIDSDKTDEVELQNAVKNAANHLSPFDASLIEYTSYADTSTIPGRYVLFWEISQSGATQIPPSVFEDCCLSIEESLNSVYRqgrvsdksigplEIKLVESGTFDKLMDYALSQgasinqyktprCVKYAPIIELLNSKVVSNYFSpkcpkwvpgqkqwcteitk

MPEAPQNLLERAEHDGLVSDNNKKALKFIESVTSQADEVQDRVLAEILSCSANVEYLQRYGLNGHVDKGTFKKVMPVITYEDLKPYVDRIANGDCSPILCSQPISEFLTSSGTSGGERKLMPTIeeelerrsllysllMPVVDQFVPGLDKGKAMYFLFIKSEAKTPGGLVARPVLTSYYKSSLFKDRPFDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQNLQVLRVGAVFASGFIRAIRFLEKHWPLLCNDIRKGTIDPKITDPSVREAVLKILKPNTQLADFIEAECSKESWKGIITRLWPNTKYIDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGLNLNPMCNPSEVSYTLLPTMAYFEFLPVNRKNGEPKSLKEDQQQVLDLTDVELGQEYELVVTTYAGLYRYRVGDILKVAGFKNKAPQFNFVCRKNVALSIDSDKTDEVELQNAVKNAANHLSPFDASLIEYTSYADTSTIPGRYVLFWEISQSGATQIPPSVFEDCCLSIEESLNSVYRQGRVSDKSIGPLEIKLVESGTFDKLMDYALSQGASINQYKTPRCVKYAPIIELLNSKVVSNYFSPKCPKWVPGQKQWCTEITK

**************************KFIESVT**ADEVQDRVLAEILSCSANVEYLQRYGLNGHVDKGTFKKVMPVITYEDLKPYVDRIANGDCSPILCSQPISEFL********************ERRSLLYSLLMPVVDQFVPGLDKGKAMYFLFIKSEAKTPGGLVARPVLTSYYKSSLFKDRPFDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQNLQVLRVGAVFASGFIRAIRFLEKHWPLLCNDIRKGTIDPKITDPSVREAVLKILKPNTQLADFIEAECSKESWKGIITRLWPNTKYIDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGLNLNPMCNPSEVSYTLLPTMAYFEFLPVN***************VLDLTDVELGQEYELVVTTYAGLYRYRVGDILKVAGFKNKAPQFNFVCRKNVALSIDSDKTDEVELQNAVKNAANHLSPFDASLIEYTSYADTSTIPGRYVLFWEISQSGATQIPPSVFEDCCLSIEESLNSVYRQGRVSDKSIGPLEIKLVESGTFDKLMDYALSQGASINQYKTPRCVKYAPIIELLNSKVVSNYFSPKCPKWVPGQKQWCT****

***********AEHDGLVSDNNKKALKFIESVTSQADEVQDRVLAEILSCSANVEYLQRYGLNGHVDKGTFKKVMPVITYEDLKPYVDRIANGDCSPILCSQPISEFL**********KLMPTIEEELERRSLLYSLLMPVVDQFVPGLDKGKAMYFLFIKSEAKTPGGLVARPVLTSYYKSSLFKDRPFDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQNLQVLRVGAVFASGFIRAIRFLEKHWPLLCNDIRKGTIDPKITDPSVREAVLKILKPNTQLADFIEAECSKESWKGIITRLWPNTKYIDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGLNLNPMCNPSEVSYTLLPTMAYFEFLPVNRKNGE****KEDQQQVLDLTDVELGQEYELVVTTYAGLYRYRVGDILKVAGFKNKAPQFNFVCRKNVALSIDSDKTDEVELQNAVKNAANHLSPFDASLIEYTSYADTSTIPGRYVLFWEISQSGATQIPPSVFEDCCLSIEESLNSVYRQGRVSDKSIGPLEIKLVESGTFDKLMD****************CVKYAPIIELLNSKVVSNYFSPKCPKWVPGQK********

******************SDNNKKALKFIESVTSQADEVQDRVLAEILSCSANVEYLQRYGLNGHVDKGTFKKVMPVITYEDLKPYVDRIANGDCSPILCSQPISEFLTSSGTSGGERKLMPTIEEELERRSLLYSLLMPVVDQFVPGLDKGKAMYFLFIKSEAKTPGGLVARPVLTSYYKSSLFKDRPFDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQNLQVLRVGAVFASGFIRAIRFLEKHWPLLCNDIRKGTIDPKITDPSVREAVLKILKPNTQLADFIEAECSKESWKGIITRLWPNTKYIDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGLNLNPMCNPSEVSYTLLPTMAYFEFLPVNRK***********QQVLDLTDVELGQEYELVVTTYAGLYRYRVGDILKVAGFKNKAPQFNFVCRKNVALSIDSDKTDEVELQNAVKNAANHLSPFDASLIEYTSYADTSTIPGRYVLFWEISQSGATQIPPSVFEDCCLSIEESLNSVYRQGRVSDKSIGPLEIKLVESGTFDKLMDYALSQGASINQYKTPRCVKYAPIIELLNSKVVSNYFSPKCPKWVPGQKQWC*****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		609	2.2.26 [Sep-21-2011]
Q9LSQ4		612	Indole-3-acetic acid-amid	yes	no	0.988	0.983	0.781	0.0
O81829		612	Indole-3-acetic acid-amid	no	no	0.986	0.982	0.775	0.0
Q8LQM5		610	Probable indole-3-acetic	yes	no	0.980	0.978	0.673	0.0
Q60EJ6		629	Probable indole-3-acetic	no	no	0.960	0.930	0.668	0.0
Q0D4Z6		605	Probable indole-3-acetic	no	no	0.963	0.970	0.629	0.0
A3BLS0		605	Probable indole-3-acetic	N/A	no	0.963	0.970	0.629	0.0
O82333		590	Probable indole-3-acetic	no	no	0.937	0.967	0.651	0.0
P0C0M2		614	Probable indole-3-acetic	no	no	0.952	0.944	0.632	0.0
O22190		595	Indole-3-acetic acid-amid	no	no	0.945	0.968	0.630	0.0
Q9LQ68		597	Indole-3-acetic acid-amid	no	no	0.973	0.993	0.589	0.0

>sp\|Q9LSQ4\|GH36_ARATH Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1	Back alignment and function desciption

 Score =  997 bits (2577), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/610 (78%), Positives = 538/610 (88%), Gaps = 8/610 (1%)

Query: 1   MPEAPQNLLERAEHDGLVSDNNKKALKFIESVTSQADEVQDRVLAEILSCSANVEYLQRY 60
           MPEAP+ +      D  +++ NK  L+FIE VT+ AD+VQ RVL EILS +A+VEYL+R+
Sbjct: 1   MPEAPK-IAALEVSDESLAEKNKNKLQFIEDVTTNADDVQRRVLEEILSRNADVEYLKRH 59

Query: 61  GLNGHVDKGTFKKVMPVITYEDLKPYVDRIANGDCSPILCSQPISEFLTSSGTSGGERKL 120
           GL G  D+ TFK +MPV+TYED++P ++RIANGD S +LCS PISEFLTSSGTSGGERKL
Sbjct: 60  GLEGRTDRETFKHIMPVVTYEDIQPEINRIANGDKSQVLCSNPISEFLTSSGTSGGERKL 119

Query: 121 MPTIEEELERRSLLYSLLMPVVDQFVPGLDKGKAMYFLFIKSEAKTPGGLVARPVLTSYY 180
           MPTIEEEL+RRSLLYSLLMPV+DQFVPGLDKGK MYFLFIKSE+KTPGGL ARPVLTSYY
Sbjct: 120 MPTIEEELDRRSLLYSLLMPVMDQFVPGLDKGKGMYFLFIKSESKTPGGLPARPVLTSYY 179

Query: 181 KSSLFKDRPFDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQNLQVLRVGAVFASGFIRA 240
           KSS FK+RP+DPYTNYTSPN+TILC DSYQSMYSQMLCGLCQ+ +VLRVGAVFASGFIRA
Sbjct: 180 KSSHFKNRPYDPYTNYTSPNQTILCSDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRA 239

Query: 241 IRFLEKHWPLLCNDIRKGTIDPKITDPSVREAVLKILKPNTQLADFIEAECSKESWKGII 300
           I+FLEKHWP L  DIR GT+  +ITD SVREAV +ILKP+ +LADF+E+EC K SW+GII
Sbjct: 240 IKFLEKHWPELARDIRTGTLSSEITDSSVREAVGEILKPDPKLADFVESECRKTSWQGII 299

Query: 301 TRLWPNTKYIDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGLNLNPMCNPSEVS 360
           TRLWPNTKY+DVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFG+NL P+C PSEVS
Sbjct: 300 TRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLRPLCKPSEVS 359

Query: 361 YTLLPTMAYFEFLPVNRKNGE------PKSLKE-DQQQVLDLTDVELGQEYELVVTTYAG 413
           YTL+P MAYFEFLPV+R +G       PK+L E +QQ+++DL DV+LGQEYELVVTTYAG
Sbjct: 360 YTLIPNMAYFEFLPVHRNSGVTSSISLPKALTEKEQQELVDLVDVKLGQEYELVVTTYAG 419

Query: 414 LYRYRVGDILKVAGFKNKAPQFNFVCRKNVALSIDSDKTDEVELQNAVKNAANHLSPFDA 473
           LYRYRVGD+L VAGFKN APQF+F+CRKNV LSIDSDKTDEVELQNAVKNA  HL PFDA
Sbjct: 420 LYRYRVGDVLSVAGFKNNAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVTHLVPFDA 479

Query: 474 SLIEYTSYADTSTIPGRYVLFWEISQSGATQIPPSVFEDCCLSIEESLNSVYRQGRVSDK 533
           SL EYTSYADTS+IPG YVLFWE+  +G T IPPSVFEDCCL+IEESLNSVYRQGRVSDK
Sbjct: 480 SLSEYTSYADTSSIPGHYVLFWELCLNGNTPIPPSVFEDCCLTIEESLNSVYRQGRVSDK 539

Query: 534 SIGPLEIKLVESGTFDKLMDYALSQGASINQYKTPRCVKYAPIIELLNSKVVSNYFSPKC 593
           SIGPLEIK+VESGTFDKLMDYA+S GASINQYKTPRCVK+APIIELLNS+VV +YFSPKC
Sbjct: 540 SIGPLEIKMVESGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVDSYFSPKC 599

Query: 594 PKWVPGQKQW 603
           PKW PG KQW
Sbjct: 600 PKWSPGHKQW 609

Catalyzes the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin. Strongly reactive with Glu, Gln, Trp, Asp, Ala, Leu, Phe, Gly, Tyr, Met, Ile and Val. Little or no product formation with His, Ser, Thr, Arg, Lys, or Cys. Also active on pyruvic and butyric acid analogs of IAA, PAA and the synthetic auxin naphthaleneacetic acid (NAA). The two chlorinated synthetic auxin herbicides 2,4-D and 3,6-dichloro-o-anisic acid (dicamba) cannot be used as substrates.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|O81829\|GH35_ARATH Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana GN=GH3.5 PE=1 SV=1	Back alignment and function description

>sp\|Q8LQM5\|GH31_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Oryza sativa subsp. japonica GN=GH3.1 PE=2 SV=1	Back alignment and function description

>sp\|Q60EJ6\|GH34_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.4 OS=Oryza sativa subsp. japonica GN=GH3.4 PE=2 SV=1	Back alignment and function description

>sp\|Q0D4Z6\|GH38_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1	Back alignment and function description

>sp\|A3BLS0\|GH38_ORYSI Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. indica GN=GH3.8 PE=2 SV=2	Back alignment and function description

>sp\|O82333\|GH31_ARATH Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1	Back alignment and function description

>sp\|P0C0M2\|GH32_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.2 OS=Oryza sativa subsp. japonica GN=GH3.2 PE=2 SV=1	Back alignment and function description

>sp\|O22190\|GH33_ARATH Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1	Back alignment and function description

>sp\|Q9LQ68\|GH34_ARATH Indole-3-acetic acid-amido synthetase GH3.4 OS=Arabidopsis thaliana GN=GH3.4 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		609
255586158		612	Indole-3-acetic acid-amido synthetase GH	0.986	0.982	0.814	0.0
225461199		613	PREDICTED: indole-3-acetic acid-amido sy	0.995	0.988	0.808	0.0
224115146		611	GH3 family protein [Populus trichocarpa]	0.986	0.983	0.813	0.0
224124694		608	GH3 family protein [Populus trichocarpa]	0.978	0.980	0.829	0.0
359485734		614	PREDICTED: indole-3-acetic acid-amido sy	0.993	0.985	0.812	0.0
224124160		611	GH3 family protein [Populus trichocarpa]	0.986	0.983	0.806	0.0
225461203		596	PREDICTED: indole-3-acetic acid-amido sy	0.950	0.971	0.825	0.0
356514929		609	PREDICTED: indole-3-acetic acid-amido sy	0.978	0.978	0.784	0.0
356543199		607	PREDICTED: indole-3-acetic acid-amido sy	0.978	0.981	0.782	0.0
15239653		612	indole-3-acetic acid-amido synthetase GH	0.988	0.983	0.781	0.0

>gi\|255586158\|ref\|XP_002533739.1\| Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis] gi\|223526345\|gb\|EEF28642.1\| Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1047 bits (2707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/610 (81%), Positives = 559/610 (91%), Gaps = 9/610 (1%)

Query: 1   MPEAPQNLLERAEHDGLVSDNNKKALKFIESVTSQADEVQDRVLAEILSCSANVEYLQRY 60
           MPEAP+N L  ++++  +S+ N+K L+FIE VTS  DEVQ +VL EIL+ +A VEYLQ++
Sbjct: 1   MPEAPKNSLISSDYN--LSEKNRKTLQFIEDVTSNPDEVQKKVLEEILTRNARVEYLQKH 58

Query: 61  GLNGHVDKGTFKKVMPVITYEDLKPYVDRIANGDCSPILCSQPISEFLTSSGTSGGERKL 120
           GLNG+ D+ +FKK+MPVI YED++P+++RIANGD SPILCS+PISEFLTSSGTSGGERKL
Sbjct: 59  GLNGYTDRESFKKIMPVIAYEDIQPHINRIANGDTSPILCSKPISEFLTSSGTSGGERKL 118

Query: 121 MPTIEEELERRSLLYSLLMPVVDQFVPGLDKGKAMYFLFIKSEAKTPGGLVARPVLTSYY 180
           MPTIEEEL RRSLLYSLLMPV++QFVPGL+KGK MYFLFIKSEAKTPGGLVARPVLTSYY
Sbjct: 119 MPTIEEELGRRSLLYSLLMPVMNQFVPGLEKGKGMYFLFIKSEAKTPGGLVARPVLTSYY 178

Query: 181 KSSLFKDRPFDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQNLQVLRVGAVFASGFIRA 240
           KSS FKDRPFDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQ   VLRVGAVFASGFIRA
Sbjct: 179 KSSHFKDRPFDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQRNDVLRVGAVFASGFIRA 238

Query: 241 IRFLEKHWPLLCNDIRKGTIDPKITDPSVREAVLKILKPNTQLADFIEAECSKESWKGII 300
           IRFLEKHW LLCNDIR GT++P+ITD SVREAV+KILKP+ +LADFI AECS+ESW+GII
Sbjct: 239 IRFLEKHWQLLCNDIRTGTVNPQITDLSVREAVMKILKPDPKLADFIAAECSQESWQGII 298

Query: 301 TRLWPNTKYIDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGLNLNPMCNPSEVS 360
           TRLWPNTKY+DVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFG+NLNP+C PSEVS
Sbjct: 299 TRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVS 358

Query: 361 YTLLPTMAYFEFLPVNRKNG------EPKSLKE-DQQQVLDLTDVELGQEYELVVTTYAG 413
           YTL+PTMAYFEFLPV+R NG       PKSL E +QQ+++DL DV+LGQEYELVVTTYAG
Sbjct: 359 YTLIPTMAYFEFLPVHRNNGVTNSISMPKSLNEKEQQELVDLVDVKLGQEYELVVTTYAG 418

Query: 414 LYRYRVGDILKVAGFKNKAPQFNFVCRKNVALSIDSDKTDEVELQNAVKNAANHLSPFDA 473
           LYRYRVGD+L+VAGFKNKAPQFNF+CRKNV LSIDSDKTDEVELQNAVKNA NHL PFDA
Sbjct: 419 LYRYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDA 478

Query: 474 SLIEYTSYADTSTIPGRYVLFWEISQSGATQIPPSVFEDCCLSIEESLNSVYRQGRVSDK 533
           +L EYTSYADT++IPG YVLFWEI+ +G+T IPPS+FEDCCL+IEESLNSVYRQGRVSDK
Sbjct: 479 TLAEYTSYADTTSIPGHYVLFWEITLNGSTPIPPSIFEDCCLTIEESLNSVYRQGRVSDK 538

Query: 534 SIGPLEIKLVESGTFDKLMDYALSQGASINQYKTPRCVKYAPIIELLNSKVVSNYFSPKC 593
           SIGPLEIK+VE GTFDKLMDYA+S GASINQYKTPRCVK+API+ELLNS+VVS+YFSPKC
Sbjct: 539 SIGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIVELLNSRVVSSYFSPKC 598

Query: 594 PKWVPGQKQW 603
           PKWVPG KQW
Sbjct: 599 PKWVPGHKQW 608

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225461199\|ref\|XP_002283229.1\| PREDICTED: indole-3-acetic acid-amido synthetase GH3.6 isoform 1 [Vitis vinifera] gi\|147866579\|emb\|CAN83696.1\| hypothetical protein VITISV_013365 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224115146\|ref\|XP_002316954.1\| GH3 family protein [Populus trichocarpa] gi\|222860019\|gb\|EEE97566.1\| GH3 family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224124694\|ref\|XP_002319398.1\| GH3 family protein [Populus trichocarpa] gi\|222857774\|gb\|EEE95321.1\| GH3 family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359485734\|ref\|XP_002276241.2\| PREDICTED: indole-3-acetic acid-amido synthetase GH3.6-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224124160\|ref\|XP_002319260.1\| GH3 family protein [Populus trichocarpa] gi\|222857636\|gb\|EEE95183.1\| GH3 family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225461203\|ref\|XP_002283236.1\| PREDICTED: indole-3-acetic acid-amido synthetase GH3.6 isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356514929\|ref\|XP_003526154.1\| PREDICTED: indole-3-acetic acid-amido synthetase GH3.6-like [Glycine max]	Back alignment and taxonomy information

>gi\|356543199\|ref\|XP_003540050.1\| PREDICTED: indole-3-acetic acid-amido synthetase GH3.6-like [Glycine max]	Back alignment and taxonomy information

>gi|15239653|ref|NP_200262.1| indole-3-acetic acid-amido synthetase GH3.6 [Arabidopsis thaliana] gi|62900334|sp|Q9LSQ4.1|GH36_ARATH RecName: Full=Indole-3-acetic acid-amido synthetase GH3.6; AltName: Full=Auxin-responsive GH3-like protein 6; Short=AtGH3-6; AltName: Full=Protein DWARF IN LIGHT 1; Short=DFL-1 gi|8885594|dbj|BAA97524.1| auxin-responsive-like protein [Arabidopsis thaliana] gi|11041726|dbj|BAB17304.1| auxin-responsive GH3 homologue [Arabidopsis thaliana] gi|59958336|gb|AAX12878.1| At5g54510 [Arabidopsis thaliana] gi|209414530|gb|ACI46505.1| At5g54510 [Arabidopsis thaliana] gi|332009121|gb|AED96504.1| indole-3-acetic acid-amido synthetase GH3.6 [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		609
TAIR\|locus:2147314		612	DFL1 "DWARF IN LIGHT 1" [Arabi	0.988	0.983	0.760	2.3e-254
TAIR\|locus:2131739		612	WES1 [Arabidopsis thaliana (ta	0.986	0.982	0.756	7.1e-251
UNIPROTKB\|Q8LQM5		610	GH3.1 "Probable indole-3-aceti	0.980	0.978	0.657	2.8e-217
UNIPROTKB\|Q60EJ6		629	GH3.4 "Probable indole-3-aceti	0.988	0.957	0.636	1.7e-208
TAIR\|locus:2060500		590	GH3.1 "AT2G14960" [Arabidopsis	0.937	0.967	0.635	1.1e-199
UNIPROTKB\|P0C0M2		614	GH3.2 "Probable indole-3-aceti	0.952	0.944	0.615	6.8e-198
TAIR\|locus:2058588		595	GH3.3 [Arabidopsis thaliana (t	0.945	0.968	0.615	1.3e-194
TAIR\|locus:2202832		597	GH3.4 [Arabidopsis thaliana (t	0.972	0.991	0.577	1.1e-183
TAIR\|locus:2043308		585	GH3.9 "AT2G47750" [Arabidopsis	0.937	0.976	0.527	3.9e-163
UNIPROTKB\|P0C0M3		591	GH3.11 "Probable indole-3-acet	0.932	0.961	0.530	2.7e-162

TAIR\|locus:2147314 DFL1 "DWARF IN LIGHT 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2449 (867.1 bits), Expect = 2.3e-254, P = 2.3e-254
 Identities = 464/610 (76%), Positives = 523/610 (85%)

Query:     1 MPEAPQNLLERAEHDGLVSDNNKKALKFIESVTSQADEVQDRVLAEILSCSANVEYLQRY 60
             MPEAP+        + L ++ NK  L+FIE VT+ AD+VQ RVL EILS +A+VEYL+R+
Sbjct:     1 MPEAPKIAALEVSDESL-AEKNKNKLQFIEDVTTNADDVQRRVLEEILSRNADVEYLKRH 59

Query:    61 GLNGHVDKGTFKKVMPVITYEDLKPYVDRIANGDCSPILCSQPISEFLTSSGTSGGERKL 120
             GL G  D+ TFK +MPV+TYED++P ++RIANGD S +LCS PISEFLTSSGTSGGERKL
Sbjct:    60 GLEGRTDRETFKHIMPVVTYEDIQPEINRIANGDKSQVLCSNPISEFLTSSGTSGGERKL 119

Query:   121 MPTIXXXXXXXXXXXXXXMPVVDQFVPGLDKGKAMYFLFIKSEAKTPGGLVARPVLTSYY 180
             MPTI              MPV+DQFVPGLDKGK MYFLFIKSE+KTPGGL ARPVLTSYY
Sbjct:   120 MPTIEEELDRRSLLYSLLMPVMDQFVPGLDKGKGMYFLFIKSESKTPGGLPARPVLTSYY 179

Query:   181 KSSLFKDRPFDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQNLQVLRVGAVFASGFIRA 240
             KSS FK+RP+DPYTNYTSPN+TILC DSYQSMYSQMLCGLCQ+ +VLRVGAVFASGFIRA
Sbjct:   180 KSSHFKNRPYDPYTNYTSPNQTILCSDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRA 239

Query:   241 IRFLEKHWPLLCNDIRKGTIDPKITDPSVREAVLKILKPNTQLADFIEAECSKESWKGII 300
             I+FLEKHWP L  DIR GT+  +ITD SVREAV +ILKP+ +LADF+E+EC K SW+GII
Sbjct:   240 IKFLEKHWPELARDIRTGTLSSEITDSSVREAVGEILKPDPKLADFVESECRKTSWQGII 299

Query:   301 TRLWPNTKYIDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGLNLNPMCNPSEVS 360
             TRLWPNTKY+DVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFG+NL P+C PSEVS
Sbjct:   300 TRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLRPLCKPSEVS 359

Query:   361 YTLLPTMAYFEFLPVNRKNGE------PKSLKE-DQQQVLDLTDVELGQEYELVVTTYAG 413
             YTL+P MAYFEFLPV+R +G       PK+L E +QQ+++DL DV+LGQEYELVVTTYAG
Sbjct:   360 YTLIPNMAYFEFLPVHRNSGVTSSISLPKALTEKEQQELVDLVDVKLGQEYELVVTTYAG 419

Query:   414 LYRYRVGDILKVAGFKNKAPQFNFVCRKNVALSIDSDKTDEVELQNAVKNAANHLSPFDA 473
             LYRYRVGD+L VAGFKN APQF+F+CRKNV LSIDSDKTDEVELQNAVKNA  HL PFDA
Sbjct:   420 LYRYRVGDVLSVAGFKNNAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVTHLVPFDA 479

Query:   474 SLIEYTSYADTSTIPGRYVLFWEISQSGATQIPPSVFEDCCLSIEESLNSVYRQGRVSDK 533
             SL EYTSYADTS+IPG YVLFWE+  +G T IPPSVFEDCCL+IEESLNSVYRQGRVSDK
Sbjct:   480 SLSEYTSYADTSSIPGHYVLFWELCLNGNTPIPPSVFEDCCLTIEESLNSVYRQGRVSDK 539

Query:   534 SIGPLEIKLVESGTFDKLMDYALSQGASINQYKTPRCVKYAPIIELLNSKVVSNYFSPKC 593
             SIGPLEIK+VESGTFDKLMDYA+S GASINQYKTPRCVK+APIIELLNS+VV +YFSPKC
Sbjct:   540 SIGPLEIKMVESGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVDSYFSPKC 599

Query:   594 PKWVPGQKQW 603
             PKW PG KQW
Sbjct:   600 PKWSPGHKQW 609

GO:0005737 "cytoplasm" evidence=ISM;ISS

GO:0009733 "response to auxin stimulus" evidence=ISS;RCA;IMP

GO:0009734 "auxin mediated signaling pathway" evidence=RCA;IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0010252 "auxin homeostasis" evidence=TAS

GO:0010279 "indole-3-acetic acid amido synthetase activity" evidence=IDA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR\|locus:2131739 WES1 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8LQM5 GH3.1 "Probable indole-3-acetic acid-amido synthetase GH3.1" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

UNIPROTKB\|Q60EJ6 GH3.4 "Probable indole-3-acetic acid-amido synthetase GH3.4" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2060500 GH3.1 "AT2G14960" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|P0C0M2 GH3.2 "Probable indole-3-acetic acid-amido synthetase GH3.2" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2058588 GH3.3 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2202832 GH3.4 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2043308 GH3.9 "AT2G47750" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|P0C0M3 GH3.11 "Probable indole-3-acetic acid-amido synthetase GH3.11" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A3BLS0	GH38_ORYSI	6, ., 3, ., 2, ., -	0.6290	0.9638	0.9702	N/A	no
Q9LSQ4	GH36_ARATH	6, ., 3, ., 2, ., -	0.7819	0.9885	0.9836	yes	no
Q8LQM5	GH31_ORYSJ	6, ., 3, ., 2, ., -	0.6738	0.9802	0.9786	yes	no
O81829	GH35_ARATH	6, ., 3, ., 2, ., -	0.7757	0.9868	0.9820	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GH3-5	GH3 family protein (611 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		609
PLN02620		612	PLN02620, PLN02620, indole-3-acetic acid-amido syn	0.0
PLN02247		606	PLN02247, PLN02247, indole-3-acetic acid-amido syn	0.0
PLN02249		597	PLN02249, PLN02249, indole-3-acetic acid-amido syn	0.0
pfam03321		513	pfam03321, GH3, GH3 auxin-responsive promoter	0.0

>gnl\|CDD\|166261 PLN02620, PLN02620, indole-3-acetic acid-amido synthetase	Back alignment and domain information

 Score = 1174 bits (3038), Expect = 0.0
 Identities = 511/612 (83%), Positives = 559/612 (91%), Gaps = 8/612 (1%)

Query: 1   MPEAPQNLLERAEHDGLVSDNNKKALKFIESVTSQADEVQDRVLAEILSCSANVEYLQRY 60
           MPEAP+N L     D  +++ NKKAL+FIE VTS ADEVQ RVL EILS +A+VEYLQR+
Sbjct: 1   MPEAPKNSLLEVG-DYNLAEKNKKALQFIEDVTSNADEVQKRVLEEILSRNAHVEYLQRH 59

Query: 61  GLNGHVDKGTFKKVMPVITYEDLKPYVDRIANGDCSPILCSQPISEFLTSSGTSGGERKL 120
           GLNG  D+ TFKKVMPVITYED++P ++RIANGD SPILCS+PISEFLTSSGTSGGERKL
Sbjct: 60  GLNGRTDRETFKKVMPVITYEDIQPDINRIANGDTSPILCSKPISEFLTSSGTSGGERKL 119

Query: 121 MPTIEEELERRSLLYSLLMPVVDQFVPGLDKGKAMYFLFIKSEAKTPGGLVARPVLTSYY 180
           MPTIEEEL RRSLLYSLLMPV+ QFVPGL+KGK MYFLFIKSEAKTPGGLVARPVLTSYY
Sbjct: 120 MPTIEEELGRRSLLYSLLMPVMSQFVPGLEKGKGMYFLFIKSEAKTPGGLVARPVLTSYY 179

Query: 181 KSSLFKDRPFDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQNLQVLRVGAVFASGFIRA 240
           KSS FKDRP+DPYTNYTSPNETILCPDSYQSMYSQMLCGLCQ+ +VLRVGAVFASGFIRA
Sbjct: 180 KSSHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRA 239

Query: 241 IRFLEKHWPLLCNDIRKGTIDPKITDPSVREAVLKILKPNTQLADFIEAECSKESWKGII 300
           IRFLEKHW LLC DIR GTID +ITDPSVREAV+KILKP+ +LADF+EAEC KESW+GII
Sbjct: 240 IRFLEKHWTLLCRDIRTGTIDSQITDPSVREAVMKILKPDPKLADFVEAECRKESWQGII 299

Query: 301 TRLWPNTKYIDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGLNLNPMCNPSEVS 360
           TRLWPNTKY+DVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFG+NLNP+C PSEVS
Sbjct: 300 TRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVS 359

Query: 361 YTLLPTMAYFEFLPVNRKNG------EPKSLKE-DQQQVLDLTDVELGQEYELVVTTYAG 413
           YTL+PTMAYFEFLPV+R NG       PKSL E +QQ+++DL DV+LGQEYELVVTTYAG
Sbjct: 360 YTLIPTMAYFEFLPVHRNNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTYAG 419

Query: 414 LYRYRVGDILKVAGFKNKAPQFNFVCRKNVALSIDSDKTDEVELQNAVKNAANHLSPFDA 473
           LYRYRVGD+L+VAGFKNKAPQF+F+CRKNV LSIDSDKTDEVELQNAVKNA NHL PFDA
Sbjct: 420 LYRYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDA 479

Query: 474 SLIEYTSYADTSTIPGRYVLFWEISQSGATQIPPSVFEDCCLSIEESLNSVYRQGRVSDK 533
           SL EYTSYADTSTIPG YVLFWE+  +G+T IPPSVFEDCCL+IEESLNSVYRQGRVSDK
Sbjct: 480 SLTEYTSYADTSTIPGHYVLFWELCLNGSTPIPPSVFEDCCLTIEESLNSVYRQGRVSDK 539

Query: 534 SIGPLEIKLVESGTFDKLMDYALSQGASINQYKTPRCVKYAPIIELLNSKVVSNYFSPKC 593
           SIGPLEIK+VE GTFDKLMDYA+S GASINQYKTPRCVK+APIIELLNS+VVSNYFSPKC
Sbjct: 540 SIGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVSNYFSPKC 599

Query: 594 PKWVPGQKQWCT 605
           PKWVPG KQWC+
Sbjct: 600 PKWVPGHKQWCS 611

Length = 612

>gnl\|CDD\|165890 PLN02247, PLN02247, indole-3-acetic acid-amido synthetase	Back alignment and domain information

>gnl\|CDD\|177891 PLN02249, PLN02249, indole-3-acetic acid-amido synthetase	Back alignment and domain information

>gnl\|CDD\|217492 pfam03321, GH3, GH3 auxin-responsive promoter	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		609
PLN02620		612	indole-3-acetic acid-amido synthetase	100.0
PLN02247		606	indole-3-acetic acid-amido synthetase	100.0
PLN02249		597	indole-3-acetic acid-amido synthetase	100.0
PF03321		528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	100.0
COG1541		438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.97
TIGR03335		445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.96
TIGR02155		422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.94
TIGR02304		430	aden_form_hyp probable adenylate-forming enzyme. M	99.87
COG1021		542	EntE Peptide arylation enzymes [Secondary metaboli	99.69
PRK06334		539	long chain fatty acid--[acyl-carrier-protein] liga	99.58
PRK07529		632	AMP-binding domain protein; Validated	99.57
PRK00174		637	acetyl-CoA synthetase; Provisional	99.56
TIGR02188		625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.56
PRK07788		549	acyl-CoA synthetase; Validated	99.53
PRK05605		573	long-chain-fatty-acid--CoA ligase; Validated	99.52
PTZ00237		647	acetyl-CoA synthetase; Provisional	99.52
PLN02574		560	4-coumarate--CoA ligase-like	99.51
PRK09274		552	peptide synthase; Provisional	99.5
PRK04319		570	acetyl-CoA synthetase; Provisional	99.5
PRK06060		705	acyl-CoA synthetase; Validated	99.49
PRK06155		542	crotonobetaine/carnitine-CoA ligase; Provisional	99.49
PRK13295		547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.48
PRK08314		546	long-chain-fatty-acid--CoA ligase; Validated	99.48
PLN02860		563	o-succinylbenzoate-CoA ligase	99.47
PLN02654		666	acetate-CoA ligase	99.47
PRK06187		521	long-chain-fatty-acid--CoA ligase; Validated	99.46
PRK07514		504	malonyl-CoA synthase; Validated	99.46
TIGR01734		502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.46
COG0318		534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	99.46
PRK05677		562	long-chain-fatty-acid--CoA ligase; Validated	99.46
PLN03051		499	acyl-activating enzyme; Provisional	99.45
PRK10524		629	prpE propionyl-CoA synthetase; Provisional	99.45
TIGR02316		628	propion_prpE propionate--CoA ligase. This family c	99.45
PRK06164		540	acyl-CoA synthetase; Validated	99.45
PLN02246		537	4-coumarate--CoA ligase	99.45
PRK09088		488	acyl-CoA synthetase; Validated	99.44
TIGR03205		541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.44
TIGR03208		538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.44
PRK13383		516	acyl-CoA synthetase; Provisional	99.44
PRK06145		497	acyl-CoA synthetase; Validated	99.43
PRK07867		529	acyl-CoA synthetase; Validated	99.43
PRK08316		523	acyl-CoA synthetase; Validated	99.42
PRK07638		487	acyl-CoA synthetase; Validated	99.42
TIGR02275		527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	99.42
PRK04813		503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.42
PRK03584		655	acetoacetyl-CoA synthetase; Provisional	99.42
PRK07656		513	long-chain-fatty-acid--CoA ligase; Validated	99.42
PLN02614		666	long-chain acyl-CoA synthetase	99.41
PRK12583		558	acyl-CoA synthetase; Provisional	99.41
PLN02736		651	long-chain acyl-CoA synthetase	99.41
TIGR01217		652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.41
KOG1176		537	consensus Acyl-CoA synthetase [Lipid transport and	99.4
PRK13382		537	acyl-CoA synthetase; Provisional	99.4
PRK10946		536	entE enterobactin synthase subunit E; Provisional	99.4
TIGR03098		515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.4
PRK07787		471	acyl-CoA synthetase; Validated	99.4
PRK07470		528	acyl-CoA synthetase; Validated	99.4
TIGR01733		408	AA-adenyl-dom amino acid adenylation domain. This	99.39
PLN02330		546	4-coumarate--CoA ligase-like 1	99.39
KOG1177		596	consensus Long chain fatty acid acyl-CoA ligase [L	99.39
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.39
PRK05852		534	acyl-CoA synthetase; Validated	99.38
PRK07786		542	long-chain-fatty-acid--CoA ligase; Validated	99.38
PRK12492		562	long-chain-fatty-acid--CoA ligase; Provisional	99.37
PRK06839		496	acyl-CoA synthetase; Validated	99.36
PRK07769		631	long-chain-fatty-acid--CoA ligase; Validated	99.35
PTZ00342		746	acyl-CoA synthetase; Provisional	99.35
PRK06188		524	acyl-CoA synthetase; Validated	99.35
PRK10252		1296	entF enterobactin synthase subunit F; Provisional	99.34
PLN02861		660	long-chain-fatty-acid-CoA ligase	99.34
PRK08315		559	AMP-binding domain protein; Validated	99.34
PRK12406		509	long-chain-fatty-acid--CoA ligase; Provisional	99.34
PRK13388		540	acyl-CoA synthetase; Provisional	99.33
PRK03640		483	O-succinylbenzoic acid--CoA ligase; Provisional	99.33
PRK08974		560	long-chain-fatty-acid--CoA ligase; Validated	99.33
PLN03052		728	acetate--CoA ligase; Provisional	99.33
COG0365		528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.33
PRK12467		3956	peptide synthase; Provisional	99.33
PRK08043		718	bifunctional acyl-[acyl carrier protein] synthetas	99.33
TIGR03443		1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.32
PRK05857		540	acyl-CoA synthetase; Validated	99.32
PLN02387		696	long-chain-fatty-acid-CoA ligase family protein	99.32
PRK06710		563	long-chain-fatty-acid--CoA ligase; Validated	99.31
PRK07059		557	Long-chain-fatty-acid--CoA ligase; Validated	99.31
PRK12467		3956	peptide synthase; Provisional	99.3
TIGR02262		508	benz_CoA_lig benzoate-CoA ligase family. Character	99.3
PRK08276		502	long-chain-fatty-acid--CoA ligase; Validated	99.3
PRK05850		578	acyl-CoA synthetase; Validated	99.29
PRK07768		545	long-chain-fatty-acid--CoA ligase; Validated	99.28
PRK13390		501	acyl-CoA synthetase; Provisional	99.27
PRK06178		567	acyl-CoA synthetase; Validated	99.27
PRK12316		5163	peptide synthase; Provisional	99.27
PRK12476		612	putative fatty-acid--CoA ligase; Provisional	99.27
PRK12316		5163	peptide synthase; Provisional	99.26
PRK06087		547	short chain acyl-CoA synthetase; Reviewed	99.26
PRK08751		560	putative long-chain fatty acyl CoA ligase; Provisi	99.26
PRK05851		525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.25
PRK13391		511	acyl-CoA synthetase; Provisional	99.25
PLN03102		579	acyl-activating enzyme; Provisional	99.25
PRK08008		517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.24
PRK08279		600	long-chain-acyl-CoA synthetase; Validated	99.23
PLN02430		660	long-chain-fatty-acid-CoA ligase	99.23
COG1022		613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	99.22
PRK05620		576	long-chain-fatty-acid--CoA ligase; Validated	99.22
PRK05691		4334	peptide synthase; Validated	99.22
PRK08308		414	acyl-CoA synthetase; Validated	99.2
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.19
PRK07798		533	acyl-CoA synthetase; Validated	99.18
PRK09192		579	acyl-CoA synthetase; Validated	99.17
PF00501		417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	99.16
PRK07008		539	long-chain-fatty-acid--CoA ligase; Validated	99.16
PRK07445		452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.16
PRK08180		614	feruloyl-CoA synthase; Reviewed	99.15
KOG1175		626	consensus Acyl-CoA synthetase [Lipid transport and	99.15
TIGR01923		436	menE O-succinylbenzoate-CoA ligase. This model rep	99.15
PTZ00216		700	acyl-CoA synthetase; Provisional	99.15
PRK05691		4334	peptide synthase; Validated	99.14
PRK07824		358	O-succinylbenzoic acid--CoA ligase; Provisional	99.14
PRK12582		624	acyl-CoA synthetase; Provisional	99.12
PRK06018		542	putative acyl-CoA synthetase; Provisional	99.11
PLN02479		567	acetate-CoA ligase	99.1
KOG1256		691	consensus Long-chain acyl-CoA synthetases (AMP-for	99.08
PRK07868		994	acyl-CoA synthetase; Validated	99.07
PRK08162		545	acyl-CoA synthetase; Validated	99.0
PRK09029		458	O-succinylbenzoic acid--CoA ligase; Provisional	98.93
TIGR02372		386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	98.7
KOG1180		678	consensus Acyl-CoA synthetase [Lipid transport and	98.65
KOG1179		649	consensus Very long-chain acyl-CoA synthetase/fatt	98.54
PF04443		365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.35
COG1020		642	EntF Non-ribosomal peptide synthetase modules and	97.51
PTZ00297		1452	pantothenate kinase; Provisional	96.29
PF14535		96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	94.66
PRK09188		365	serine/threonine protein kinase; Provisional	94.04

>PLN02620 indole-3-acetic acid-amido synthetase	Back alignment and domain information

Probab=100.00  E-value=1.1e-133  Score=1107.20  Aligned_cols=586  Identities=85%  Similarity=1.374  Sum_probs=552.2

Q ss_pred             cccHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCChHHHhhCCCCCCChHhHhhhCCCCChhchhHHHHHHhcCCCCCcc
Q 046696           20 DNNKKALKFIESVTSQADEVQDRVLAEILSCSANVEYLQRYGLNGHVDKGTFKKVMPVITYEDLKPYVDRIANGDCSPIL   99 (609)
Q Consensus        20 ~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~i~s~edF~~~vPl~~Yedl~p~ier~~~Ge~~~vl   99 (609)
                      +.+++.++.+|..++|+.++|+++|++||+.|++|+|||+|||++|+++++||++|||++|||++|||+|+++|+.++||
T Consensus        19 ~~~~~~l~~ie~~t~~~~~vQ~~vL~~IL~~n~~Teyg~~~~f~~i~~~~~F~~~VPv~~Yedl~pyI~Ri~~Ge~s~vL   98 (612)
T PLN02620         19 EKNKKALQFIEDVTSNADEVQKRVLEEILSRNAHVEYLQRHGLNGRTDRETFKKVMPVITYEDIQPDINRIANGDTSPIL   98 (612)
T ss_pred             cchHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhHHhcCCCCCCCHHHHHHhCCCccHHHhHHHHHHHHcCCCCCcc
Confidence            44477789999999999999999999999999999999999999999999999999999999999999999999877999


Q ss_pred             cCCCcceeecccccCCCCccccccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccccccCCCCeeeecccccc
Q 046696          100 CSQPISEFLTSSGTSGGERKLMPTIEEELERRSLLYSLLMPVVDQFVPGLDKGKAMYFLFIKSEAKTPGGLVARPVLTSY  179 (609)
Q Consensus       100 ~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~s~~~  179 (609)
                      |++||.+|++|||||||++|+||+|+++++.+..++.+|..++++.+|++..||.||+++...+..|++|||+|++|+.+
T Consensus        99 ~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~~~~~~~~~~~~~~p~l~~Gk~~~~~~~~~~~~T~~Gip~g~~st~~  178 (612)
T PLN02620         99 CSKPISEFLTSSGTSGGERKLMPTIEEELGRRSLLYSLLMPVMSQFVPGLEKGKGMYFLFIKSEAKTPGGLVARPVLTSY  178 (612)
T ss_pred             CCCChhhhhhcCCCCCCceeeeecCHHHHHHHHHHHHHHHHHHHhhCCCcccCcEEEEEecccCccCCCCcccccccchh
Confidence            99999999999999988999999999999998888999999999989999999999999888899999999999999999


Q ss_pred             ccccccCCCCCCCCcccCCCcccccCCChhhhHHHHHHhhhccccceeEEeecchHHHHHHHHHHHhhHHHHHHHHHccc
Q 046696          180 YKSSLFKDRPFDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQNLQVLRVGAVFASGFIRAIRFLEKHWPLLCNDIRKGT  259 (609)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~~~~~~~ll~~~~~l~~~w~~l~~dI~~gt  259 (609)
                      +.|..|++++..+...|++|.++++++|..|+|||||||+|.++++|..++++|+++|+.+++.|+++|++||+||+.|+
T Consensus       179 y~s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~v~~v~svfa~~ll~a~~~Le~~w~~L~~DI~~G~  258 (612)
T PLN02620        179 YKSSHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIRFLEKHWTLLCRDIRTGT  258 (612)
T ss_pred             hhhhhhhhcccccccceeCcHHhccCCCHHHHHHHHHHHHhhcchhhceEEeechHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999988888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCChhhHHHHHhhcCcCHHHHHHHHHHhccccccccccccCCCCceeeEEEecCccchHHHHhhhcCCCCeecccc
Q 046696          260 IDPKITDPSVREAVLKILKPNTQLADFIEAECSKESWKGIITRLWPNTKYIDVIVTGTMSQYIPTLDYYSNGLPLVCTMY  339 (609)
Q Consensus       260 ~~~~i~~~~~r~~l~~~l~p~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~G~~~~y~~~l~~~~~g~~~~~~~Y  339 (609)
                      ++++++++++|.++++.|+|||++|+.|+.+|.+.+|+|++++||||+++|.||++|+|++|++.|+.|+||+|+++.+|
T Consensus       259 ls~~itd~~~R~av~~~L~p~pelA~~i~~~c~~~~w~gii~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y  338 (612)
T PLN02620        259 IDSQITDPSVREAVMKILKPDPKLADFVEAECRKESWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMY  338 (612)
T ss_pred             CCccCCCHHHHHHHHhhcCCCHHHHHHHHHHhccccccCcHHHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccc
Confidence            99999999999999999999999999999999988999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCCCCCceeeccCceEEEEEeCCCCCCCC-----C--CcccccccccccccCCCCCeEEEEEeecc
Q 046696          340 ASSECYFGLNLNPMCNPSEVSYTLLPTMAYFEFLPVNRKNGEP-----K--SLKEDQQQVLDLTDVELGQEYELVVTTYA  412 (609)
Q Consensus       340 gaSEg~~~i~~~~~~~~~~~~~~l~~~~~f~EFip~~~~~~~~-----~--~~~~~~~~~l~~~eve~G~~yelvvTt~~  412 (609)
                      +||||++|+|++|.|+|+.++|+|+|+.+||||||.++.+...     +  .+..+++++|+++||++|++|||||||++
T Consensus       339 ~ASE~~~ginl~P~~~p~~~sy~L~p~~~yFEFip~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt~~  418 (612)
T PLN02620        339 ASSECYFGVNLNPLCKPSEVSYTLIPTMAYFEFLPVHRNNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTYA  418 (612)
T ss_pred             cccceEEEeccCCCCCcccceeeecCCcEEEEEeeccCcccccccccccccccccccCccccHHHccCCCeEEEEEEecC
Confidence            9999999999999999988999999999999999987532100     0  01134577899999999999999999999


Q ss_pred             ceeeeecCCEEEEecccCCCCEEEEEeecCeeEeccccccCHHHHHHHHHHHHhhcCCCCceEEeEEEeecCCCCCceEE
Q 046696          413 GLYRYRVGDILKVAGFKNKAPQFNFVCRKNVALSIDSDKTDEVELQNAVKNAANHLSPFDASLIEYTSYADTSTIPGRYV  492 (609)
Q Consensus       413 GlyRYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~GEkv~e~~v~~av~~a~~~l~~~g~~l~~f~~~~d~~~~p~~Y~  492 (609)
                      ||||||+||||+|+||||++|.|+|+||.+.+++++|||++|++|..||.+|.+.|.+.+++|+||++++|.+..||||+
T Consensus       419 GLyRYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a~~~l~~~~~~l~dyts~~d~~~~PghYv  498 (612)
T PLN02620        419 GLYRYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDASLTEYTSYADTSTIPGHYV  498 (612)
T ss_pred             ceEEEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHHHHhhcccCceeeeEEeccccCCCCCceE
Confidence            99999999999999999999999999999999999999999999999999999888667999999999999989999999


Q ss_pred             EEEEEeeCCCCCCChhhHHHHHHHHHHHhChHhHhhccCCCccCCeEEEEcCCccHHHHHHHHHhcCCCCCCCCCCcccC
Q 046696          493 LFWEISQSGATQIPPSVFEDCCLSIEESLNSVYRQGRVSDKSIGPLEIKLVESGTFDKLMDYALSQGASINQYKTPRCVK  572 (609)
Q Consensus       493 l~~E~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~iv~~gtF~~~~~~~~~~G~~~~Q~K~Pr~~~  572 (609)
                      ||||+...+....+.+++++||..||++||.+|+.+|..+++|+|++|++|++|||+++|++++++|++.+|||+|||++
T Consensus       499 l~~El~~~~~~~~~~~~l~~cc~~lE~~Ln~~Yr~~R~~~~sIgPLeirvv~~GtF~~l~~~~~~~G~s~~QyK~Pr~v~  578 (612)
T PLN02620        499 LFWELCLNGSTPIPPSVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVK  578 (612)
T ss_pred             EEEEEecCCCCCCCHHHHHHHHHHHHHHhCHHHHHHHhcCCcCCCcEEEEeCCChHHHHHHHHHHcCCccccccCceEec
Confidence            99999532222356679999999999999999999996655799999999999999999999999999999999999999


Q ss_pred             CHhHHHHHhcccccccccCCCCCCCCCcccccc
Q 046696          573 YAPIIELLNSKVVSNYFSPKCPKWVPGQKQWCT  605 (609)
Q Consensus       573 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~  605 (609)
                      +++++++|+++|+++|+|+++|.|+|+.++||+
T Consensus       579 ~~~~~~~l~~~v~~~~~s~~~~~~~~~~~~~~~  611 (612)
T PLN02620        579 FAPIIELLNSRVVSNYFSPKCPKWVPGHKQWCS  611 (612)
T ss_pred             CHHHHHHHHhhhheeeccccCCCCCccccCcCC
Confidence            999999999999999999999999999999997

>PLN02247 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PLN02249 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin	Back alignment and domain information

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]	Back alignment and domain information

>TIGR03335 F390_ftsA coenzyme F390 synthetase	Back alignment and domain information

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase	Back alignment and domain information

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme	Back alignment and domain information

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>PRK07529 AMP-binding domain protein; Validated	Back alignment and domain information

>PRK00174 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase	Back alignment and domain information

>PRK07788 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PTZ00237 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02574 4-coumarate--CoA ligase-like	Back alignment and domain information

>PRK09274 peptide synthase; Provisional	Back alignment and domain information

>PRK04319 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK06060 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional	Back alignment and domain information

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed	Back alignment and domain information

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PLN02860 o-succinylbenzoate-CoA ligase	Back alignment and domain information

>PLN02654 acetate-CoA ligase	Back alignment and domain information

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK07514 malonyl-CoA synthase; Validated	Back alignment and domain information

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1	Back alignment and domain information

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PLN03051 acyl-activating enzyme; Provisional	Back alignment and domain information

>PRK10524 prpE propionyl-CoA synthetase; Provisional	Back alignment and domain information

>TIGR02316 propion_prpE propionate--CoA ligase	Back alignment and domain information

>PRK06164 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02246 4-coumarate--CoA ligase	Back alignment and domain information

>PRK09088 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR03205 pimA dicarboxylate--CoA ligase PimA	Back alignment and domain information

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase	Back alignment and domain information

>PRK13383 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK06145 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07867 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08316 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07638 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase	Back alignment and domain information

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional	Back alignment and domain information

>PRK03584 acetoacetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PLN02614 long-chain acyl-CoA synthetase	Back alignment and domain information

>PRK12583 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02736 long-chain acyl-CoA synthetase	Back alignment and domain information

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase	Back alignment and domain information

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PRK13382 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK10946 entE enterobactin synthase subunit E; Provisional	Back alignment and domain information

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated	Back alignment and domain information

>PRK07787 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07470 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR01733 AA-adenyl-dom amino acid adenylation domain	Back alignment and domain information

>PLN02330 4-coumarate--CoA ligase-like 1	Back alignment and domain information

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>PRK05852 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK06839 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PTZ00342 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK06188 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK10252 entF enterobactin synthase subunit F; Provisional	Back alignment and domain information

>PLN02861 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>PRK08315 AMP-binding domain protein; Validated	Back alignment and domain information

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK13388 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PLN03052 acetate--CoA ligase; Provisional	Back alignment and domain information

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated	Back alignment and domain information

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase	Back alignment and domain information

>PRK05857 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02387 long-chain-fatty-acid-CoA ligase family protein	Back alignment and domain information

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family	Back alignment and domain information

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK05850 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK13390 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK06178 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PRK12476 putative fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PRK06087 short chain acyl-CoA synthetase; Reviewed	Back alignment and domain information

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional	Back alignment and domain information

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>PRK13391 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN03102 acyl-activating enzyme; Provisional	Back alignment and domain information

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated	Back alignment and domain information

>PRK08279 long-chain-acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02430 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	Back alignment and domain information

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>PRK08308 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>PRK07798 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK09192 acyl-CoA synthetase; Validated	Back alignment and domain information

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]	Back alignment and domain information

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed	Back alignment and domain information

>PRK08180 feruloyl-CoA synthase; Reviewed	Back alignment and domain information

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>TIGR01923 menE O-succinylbenzoate-CoA ligase	Back alignment and domain information

>PTZ00216 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK12582 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK06018 putative acyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02479 acetate-CoA ligase	Back alignment and domain information

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]	Back alignment and domain information

>PRK07868 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08162 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family	Back alignment and domain information

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]	Back alignment and domain information

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria	Back alignment and domain information

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PTZ00297 pantothenate kinase; Provisional	Back alignment and domain information

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B	Back alignment and domain information

>PRK09188 serine/threonine protein kinase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		609
4b2g_A		609	Crystal Structure Of An Indole-3-acetic Acid Amido		0.0
4ewv_A		581	Crystal Structure Of Gh3.12 In Complex With Ampcpp		1e-157
4eq4_A		581	Crystal Structure Of Seleno-Methionine Derivatized		1e-150
4epl_A		581	Crystal Structure Of Arabidopsis Thaliana Gh3.11 (J		1e-113

>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido Synthase From Vitis Vinifera Involved In Auxin Homeostasis Length = 609

Back alignment and structure

Iteration: 1

Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/586 (64%), Positives = 461/586 (78%), Gaps = 3/586 (0%) Query: 18 VSDNNKKALKFIESVTSQADEVQDRVLAEILSCSANVEYLQRYGLNGHVDKGTFKKVMPV 77 S+ + KAL+FIE +T AD VQ+RVLAEILS + EYL+R+ L G + TFK +PV Sbjct: 15 ASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTVRETFKSKIPV 74 Query: 78 ITYEDLKPYVDRIANGDCSPILCSQPISEFLTSSGTSGGERKLMPTIXXXXXXXXXXXXX 137 I YEDL+P + RIANGD S IL + PISEFLTSSGTS GERKLMPTI Sbjct: 75 IKYEDLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSL 134 Query: 138 XMPVVDQFVPGLDKGKAMYFLFIKSEAKTPGGLVARPVLTSYYKSSLFKDRPFDPYTNYT 197 MPV++ +VPGLDKGK +YFLF+KSE +TPGGL+ARPVLTSYYKS FK RP+DPY YT Sbjct: 135 LMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSEHFKTRPYDPYNVYT 194 Query: 198 SPNETILCPDSYQSMYSQMLCGLCQNLQVLRVGAVFASGFIRAIRFLEKHWPLLCNDIRK 257 SPNE ILC DS+QSMY+QMLCG+ + QVLR+GAVFASG +RAIRFL+ +W L +DIR Sbjct: 195 SPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQLTHDIRT 254 Query: 258 GTIDPKITDPSVREAVLKILKPNTQLADFIEAECSKESWKGIITRLWPNTKYIDVIVTGT 317 GT+ PKITDPSVR V +LKP+ +LAD + ECSK++W+GIITR+WPNTKY+DVIVTG Sbjct: 255 GTLSPKITDPSVRNCVAGVLKPDPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGA 314 Query: 318 MSQYIPTLDYYSNGLPLVCTMYASSECYFGLNLNPMCNPSEVSYTLLPTMAYFEFLPVNR 377 M+QYIPTLDYYS GLPL CTMYASSECYFGLNLNPM PSEVSYT++P MAYFEFLP + Sbjct: 315 MAQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLP-HE 373 Query: 378 KNGEPKSLKEDQQQVLDLTDVELGQEYELVVTTYAGLYRYRVGDILKVAGFKNKAPQFNF 437 + P S ++ +++DL VE+G+EYELV+TTYAGLYRYRVGDIL+V GF N APQF+F Sbjct: 374 HSSIPLS-RDSPPRLVDLAHVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHF 432 Query: 438 VCRKNVALSIDSDKTDEVELQNAVKNAANHLSPFDASLIEYTSYADTSTIPGRYVLFWEI 497 V RKNV LSIDSDKTDE ELQ AV NA+ L + S++EYTS+ADT TIPG YV++WE+ Sbjct: 433 VRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPGHYVIYWEL 492 Query: 498 SQSGATQIPP-SVFEDCCLSIEESLNSVYRQGRVSDKSIGPLEIKLVESGTFDKLMDYAL 556 + P + CCL++EESLNSVYRQGRV+D SIGPLEI++V+SGTF++LMDYA+ Sbjct: 493 LVKDSANSPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAI 552 Query: 557 SQGASINQYKTPRCVKYAPIIELLNSKVVSNYFSPKCPKWVPGQKQ 602 S+GASINQYK PRCV + PI+ELL+S+VVS++FSP P W P +++ Sbjct: 553 SRGASINQYKVPRCVNFTPIMELLDSRVVSSHFSPALPHWTPARRR 598

PyMOL of 4b2g

>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp Length = 581

Back alignment and structure

>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12 Length = 581

Back alignment and structure

>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In Complex With Ja-Ile Length = 581

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		609
4epl_A		581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	1e-176
4eql_A		581	4-substituted benzoates-glutamate ligase GH3.12; f	1e-174
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-15

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} Length = 581	Back alignment and structure

 Score =  510 bits (1313), Expect = e-176
 Identities = 221/581 (38%), Positives = 336/581 (57%), Gaps = 16/581 (2%)

Query: 17  LVSDNNKKALKFIESVTSQADEVQDRVLAEILSCSANVEYLQRYGLNGHVDKG--TFKKV 74
           + + +  + +   + +T  A +VQ + L EIL  + +  YLQ  GLNG+       FK +
Sbjct: 11  VETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEAFKSM 70

Query: 75  MPVITYEDLKPYVDRIANGDCSPILCSQPISEFLTSSGTSGGERKLMPTIEEELERRSLL 134
           +P++T  +L+PY+ R+ +GD SPIL   P+     SSGTS G  K +P  +E +E    L
Sbjct: 71  VPLVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQL 130

Query: 135 YSLLMPVVDQFVPGLDKGKAMYFLFIKSEAKTPGGLVARPVLTSYYKSSLFKDRPFDPYT 194
           +       ++  P  D GKA+ F+F   +  + GG+      T+ Y++  FK       +
Sbjct: 131 FRTAFAFRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMKSITS 190

Query: 195 NYTSPNETILCPDSYQSMYSQMLCGLCQNLQVLRVGAVFASGFIRAIRFLEKHWPLLCND 254
              SP+E I  PD +Q++Y  +L G+    QV  V AVFA G + A R  E+ W  +  D
Sbjct: 191 PSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTD 250

Query: 255 IRKGTIDPKITDPSVREAVLKILKPNTQLADFIEAEC-SKESWKGIITRLWPNTKYIDVI 313
           I+ G +  +IT PSVR A+ K+L PN +LA+ I  +C S  +W G+I  L+PN KY+  I
Sbjct: 251 IKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGI 310

Query: 314 VTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGLNLNPMCNPSEVSYTLLPTMAYFEFL 373
           +TG+M  Y+P L +Y+  LPLV   Y SSE +   N+ P  +P E ++ ++P + YFEFL
Sbjct: 311 MTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFL 370

Query: 374 PVNRKNGEPKSLKEDQQQVLDLTDVELGQEYELVVTTYAGLYRYRVGDILKVAGFKNKAP 433
           PV+          E +++ + LT V++G+EYE+V+T YAGLYRYR+GD++KV GF N  P
Sbjct: 371 PVSETG-------EGEEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIGFYNNTP 423

Query: 434 QFNFVCRKNVALSIDSDKTDEVELQNAVKNAANHLSPFDASLIEYTSYADTSTIPGRYVL 493
           Q  F+CR+N+ LSI+ DK  E +LQ +V++AA  LS     +I+++SY D ST PG Y +
Sbjct: 424 QLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAI 483

Query: 494 FWEISQSGATQIPPSVFEDCCLSIEESLNSVYRQGRVSDKSIGPLEIKLVESGTFDKLMD 553
           FWEIS          V +DCC  ++ +            K+IG LE+++V  GTF K+ +
Sbjct: 484 FWEISGE----TNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQE 539

Query: 554 YALSQGASINQYKTPRCVK--YAPIIELLNSKVVSNYFSPK 592
           + L  G+S  Q+K PRCVK   A ++++L   VVS+YFS  
Sbjct: 540 HFLGLGSSAGQFKMPRCVKPSNAKVLQILCENVVSSYFSTA 580

PyMOL of 4epl

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* Length = 581	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		609
4b2g_A		609	GH3-1 auxin conjugating enzyme; signaling protein,	100.0
4eql_A		581	4-substituted benzoates-glutamate ligase GH3.12; f	100.0
4epl_A		581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	100.0
3qov_A		436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.92
2y27_A		437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.91
2y4o_A		443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.91
3hgu_A		369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.68
2d1s_A		548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	99.66
3etc_A		580	AMP-binding protein; adenylate-forming acyl-COA sy	99.64
3e7w_A		511	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.64
3ni2_A		536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	99.63
3fce_A		512	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.62
4fuq_A		503	Malonyl COA synthetase; ANL superfamily, methylma	99.61
3kxw_A		590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.6
3g7s_A		549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	99.59
1t5h_X		504	4-chlorobenzoyl COA ligase; adenylate-forming coen	99.59
1mdb_A		539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	99.59
3rix_A		550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	99.58
3l8c_A		521	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.58
1pg4_A		652	Acetyl-COA synthetase; AMP-forming, adenylate-form	99.58
3ivr_A		509	Putative long-chain-fatty-acid COA ligase; structu	99.56
3o83_A		544	Peptide arylation enzyme; ligase, adenylation of 2	99.56
3c5e_A		570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	99.56
3ite_A		562	SIDN siderophore synthetase; ligase, non-ribosomal	99.55
3r44_A		517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	99.55
2v7b_A		529	Benzoate-coenzyme A ligase; benzoate oxidation, be	99.55
3nyq_A		505	Malonyl-COA ligase; A/B topology ababa sandwich be	99.55
1ry2_A		663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.53
3rg2_A		617	Enterobactin synthase component E (ENTE), 2,3-DIH	99.53
4gr5_A		570	Non-ribosomal peptide synthetase; MBTH-like domain	99.52
1amu_A		563	GRSA, gramicidin synthetase 1; peptide synthetase,	99.51
3ipl_A		501	2-succinylbenzoate--COA ligase; structural genomic	99.5
3tsy_A		979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.5
3gqw_A		576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	99.48
4dg8_A		620	PA1221; ANL superfamily, adenylation domain, pepti	99.45
1v25_A		541	Long-chain-fatty-acid-COA synthetase; ligase, stru	99.43
4gs5_A		358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.38
2vsq_A		1304	Surfactin synthetase subunit 3; ligase, peptidyl c	99.33
3t5a_A		480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	98.83
3lax_A		109	Phenylacetate-coenzyme A ligase; structural genomi	97.17
3gxs_A		109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	96.96

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}	Back alignment and structure

Probab=100.00  E-value=1.2e-131  Score=1104.27  Aligned_cols=583  Identities=66%  Similarity=1.134  Sum_probs=531.7

Q ss_pred             ccccHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCChHHHhhCCCCCCChHhHhhhCCCCChhchhHHHHHHhcCCCCCc
Q 046696           19 SDNNKKALKFIESVTSQADEVQDRVLAEILSCSANVEYLQRYGLNGHVDKGTFKKVMPVITYEDLKPYVDRIANGDCSPI   98 (609)
Q Consensus        19 ~~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~i~s~edF~~~vPl~~Yedl~p~ier~~~Ge~~~v   98 (609)
                      ...+++.++.||+.++++.++|+++|++||+.|++|+|||+|||++|+|++||+++|||++|||++|||||+++|+.+++
T Consensus        16 ~~~~~~~l~~~e~~~~~~~~~Q~~~L~~lL~~~~~T~~gr~~gf~~i~~~~dF~~~VPv~~Yedl~p~ieRi~~Ge~~~i   95 (609)
T 4b2g_A           16 SEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTVRETFKSKIPVIKYEDLQPEIQRIANGDRSAI   95 (609)
T ss_dssp             CHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSTTSHHHHTTCCTTCCSHHHHHHHSCCBCHHHHHHHHHHHHTTCCSSS
T ss_pred             ccchHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCChHHHhcCCCCCCCHHHHHHhCCCccHHHHHHHHHHHhcCCCCCc
Confidence            46678889999999999999999999999999999999999999999999999999999999999999999999997789


Q ss_pred             ccCCCcceeecccccCCCCccccccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccccccCCCCeeeeccccc
Q 046696           99 LCSQPISEFLTSSGTSGGERKLMPTIEEELERRSLLYSLLMPVVDQFVPGLDKGKAMYFLFIKSEAKTPGGLVARPVLTS  178 (609)
Q Consensus        99 l~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~s~~  178 (609)
                      ||++|+.+|++|||||||++|+||+|+++++.+..++++|..++++.+|.++.||.|++++++.+..|++|+|+|++|+.
T Consensus        96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t~~Gi~~g~~s~~  175 (609)
T 4b2g_A           96 LSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTS  175 (609)
T ss_dssp             SCSSCCCEEEEEEEEETTEEEEEEECTTHHHHHHHHHHHHHHHHHHHSCCGGGSEEEECCCCCCCEECTTSCEEECHHHH
T ss_pred             cCCCCCCeEEeCCCCCCCCceeeecCHHHHHHHHHHHHHHHHHHHhcCCcccCCCeEEEcccCCcccCCCCcccccchhh
Confidence            99999999999999999999999999999999888899999999988998888999999878888889999999999999


Q ss_pred             cccccccCCCCCCCCcccCCCcccccCCChhhhHHHHHHhhhccccceeEEeecchHHHHHHHHHHHhhHHHHHHHHHcc
Q 046696          179 YYKSSLFKDRPFDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQNLQVLRVGAVFASGFIRAIRFLEKHWPLLCNDIRKG  258 (609)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~~~~~~~ll~~~~~l~~~w~~l~~dI~~g  258 (609)
                      ++++.+|+++|.+|...|++|.+++.++|..+++||||||||.++++|++|+++|+++++++++.|+++|+++|+||++|
T Consensus       176 ~~~s~~f~~~p~~~~~~~~sP~~~i~~~D~~~~~Y~~Ll~~L~~~~~v~~lsa~fa~~ll~~~~~L~~~Weel~~dI~~g  255 (609)
T 4b2g_A          176 YYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQLTHDIRTG  255 (609)
T ss_dssp             HHTSHHHHTCCCCTTCCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhccchhhccccchhhcccCcHHHhcCcCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCChhhHHHHHhhcCcCHHHHHHHHHHhccccccccccccCCCCceeeEEEecCccchHHHHhhhcCCCCeeccc
Q 046696          259 TIDPKITDPSVREAVLKILKPNTQLADFIEAECSKESWKGIITRLWPNTKYIDVIVTGTMSQYIPTLDYYSNGLPLVCTM  338 (609)
Q Consensus       259 t~~~~i~~~~~r~~l~~~l~p~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~G~~~~y~~~l~~~~~g~~~~~~~  338 (609)
                      +++++++++++|++++++++|+|++|++|+++|.+.+|.|++++|||||++|.||++|||.+|++++++++||+|+++.+
T Consensus       256 tl~~~it~~~~r~a~~~~lsp~~~la~~l~~~~~~~~~~g~i~~lWPnlk~l~~~~tG~~~~Y~~~l~~~~g~~p~~~~~  335 (609)
T 4b2g_A          256 TLSPKITDPSVRNCVAGVLKPDPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAMAQYIPTLDYYSGGLPLACTM  335 (609)
T ss_dssp             CCCTTCCCHHHHHHTTTTCCCCHHHHHHHHHHHTSSCCTTTHHHHSTTCCEEEEECSGGGGGGHHHHHHHHTSCCEECCE
T ss_pred             cCCcCCCCHHHHHHHhcCCCcCHHHHHHHHHHhCCCccccCHHHhCCCCcEEEEEccCChHHHHHHHHHHcCCCccccCc
Confidence            99999999999999999999999999999999998779999999999999999999999999999999999999999999


Q ss_pred             cccccccccccCCCCCCCCCCceeeccCceEEEEEeCCCCCCCCCCcccccccccccccCCCCCeEEEEEeeccceeeee
Q 046696          339 YASSECYFGLNLNPMCNPSEVSYTLLPTMAYFEFLPVNRKNGEPKSLKEDQQQVLDLTDVELGQEYELVVTTYAGLYRYR  418 (609)
Q Consensus       339 YgaSEg~~~i~~~~~~~~~~~~~~l~~~~~f~EFip~~~~~~~~~~~~~~~~~~l~~~eve~G~~yelvvTt~~GlyRYr  418 (609)
                      |+||||++|+|++|.|+|+..+|+|+|+.+||||||+++.+..  ..+.+++++|+++||++|++|||||||.+||||||
T Consensus       336 Y~ASEg~~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~--~~~~~~~~~v~l~eVe~G~~YelViTt~~GL~RYr  413 (609)
T 4b2g_A          336 YASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIP--LSRDSPPRLVDLAHVEVGKEYELVITTYAGLYRYR  413 (609)
T ss_dssp             EECSSCEEEECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSC--CCSSSCCCCEEGGGCCTTCEEEEEEECTTSCCSEE
T ss_pred             ccccceeeeeecCCCCCcccCceeecCCcEEEEEEeccccccc--cccCCCCccccHhHcCCCCeEEEehhhhhhhhhee
Confidence            9999999999999999988889999999999999998864100  00145688999999999999999999999999999


Q ss_pred             cCCEEEEecccCCCCEEEEEeecCeeEeccccccCHHHHHHHHHHHHhhcCCCCceEEeEEEeecCCCCCceEEEEEEEe
Q 046696          419 VGDILKVAGFKNKAPQFNFVCRKNVALSIDSDKTDEVELQNAVKNAANHLSPFDASLIEYTSYADTSTIPGRYVLFWEIS  498 (609)
Q Consensus       419 ~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~GEkv~e~~v~~av~~a~~~l~~~g~~l~~f~~~~d~~~~p~~Y~l~~E~~  498 (609)
                      +||+|+|+||++++|+|+|+||.+++||++||||++++|++||.+|++.|+++|+.|.|||+++|.++.||||+||||++
T Consensus       414 ~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~Hyv~~wEl~  493 (609)
T 4b2g_A          414 VGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPGHYVIYWELL  493 (609)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred             cCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCCCcEEEEEEEe
Confidence            99999999999999999999999999999999999999999999999877778999999999999888899999999997


Q ss_pred             eC-CCCCCChhhHHHHHHHHHHHhChHhHhhccCCCccCCeEEEEcCCccHHHHHHHHHhcCCCCCCCCCCcccCCHhHH
Q 046696          499 QS-GATQIPPSVFEDCCLSIEESLNSVYRQGRVSDKSIGPLEIKLVESGTFDKLMDYALSQGASINQYKTPRCVKYAPII  577 (609)
Q Consensus       499 ~~-~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~iv~~gtF~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~  577 (609)
                      +. +...++++++++||..||++||++|+.+|.++|+|+|++|++|++|+|++|+++++++|+++||||+|||+++++++
T Consensus       494 ~~~~~~~~~~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~v~~v~~GtF~~~~~~~~~~G~~~gQ~K~PR~~~~~~~~  573 (609)
T 4b2g_A          494 VKDSANSPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGASINQYKVPRCVNFTPIM  573 (609)
T ss_dssp             ESCGGGCCCHHHHHHHHHHHHHHSCHHHHHHHHTSCCSCCCEEEEECTTCSCC----------------CCSSCC--CCH
T ss_pred             cccccCCCCHHHHHHHHHHHHHHhCHHHHHHhhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCCCcCCCcccCCHHHH
Confidence            41 11234668999999999999999999999777799999999999999999999999999999999999999999999


Q ss_pred             HHHhcccccccccCCCCCCCCCcccc
Q 046696          578 ELLNSKVVSNYFSPKCPKWVPGQKQW  603 (609)
Q Consensus       578 ~~L~~~~~~~~~~~~~~~~~~~~~~~  603 (609)
                      ++|+++||++|+|+++|.|+|.+.++
T Consensus       574 ~~L~~~v~~~~~s~~~~~~~~~~~~~  599 (609)
T 4b2g_A          574 ELLDSRVVSSHFSPALPHWTPARRRA  599 (609)
T ss_dssp             HHHHTTEEEEEECCSCCCCCSCCC--
T ss_pred             HHHHhcccccccCCCCCCCCcccchh
Confidence            99999999999999999999987765

PyMOL of 4b2g

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*	Back alignment and structure

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}	Back alignment and structure

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*	Back alignment and structure

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*	Back alignment and structure

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}	Back alignment and structure

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*	Back alignment and structure

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*	Back alignment and structure

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}	Back alignment and structure

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*	Back alignment and structure

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*	Back alignment and structure

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*	Back alignment and structure

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*	Back alignment and structure

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*	Back alignment and structure

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}	Back alignment and structure

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*	Back alignment and structure

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A	Back alignment and structure

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A	Back alignment and structure

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*	Back alignment and structure

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*	Back alignment and structure

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0	Back alignment and structure

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*	Back alignment and structure

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*	Back alignment and structure

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}	Back alignment and structure

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A	Back alignment and structure

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}	Back alignment and structure

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*	Back alignment and structure

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1	Back alignment and structure

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}	Back alignment and structure

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A	Back alignment and structure

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1	Back alignment and structure

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}	Back alignment and structure

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}	Back alignment and structure

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*	Back alignment and structure

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*	Back alignment and structure

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}	Back alignment and structure

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}	Back alignment and structure

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A	Back alignment and structure

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		609
d1pg4a_		643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.56
d1lcia_		541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	99.49
d1amua_		514	Phenylalanine activating domain of gramicidin synt	99.39
d1ry2a_		640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	99.29
d1v25a_		534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	99.14
d1mdba_		536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.13
d3cw9a1		503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.11

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.56  E-value=2.7e-13  Score=151.77  Aligned_cols=180  Identities=11%  Similarity=0.104  Sum_probs=110.2

Q ss_pred             CceeeEEEecCc---cchHHHHhhhcC--CCCeecccccccccc-ccccCCCC---CCCCCCceeeccCceEEEEEeCCC
Q 046696          307 TKYIDVIVTGTM---SQYIPTLDYYSN--GLPLVCTMYASSECY-FGLNLNPM---CNPSEVSYTLLPTMAYFEFLPVNR  377 (609)
Q Consensus       307 l~~l~~~~~G~~---~~y~~~l~~~~~--g~~~~~~~YgaSEg~-~~i~~~~~---~~~~~~~~~l~~~~~f~EFip~~~  377 (609)
                      +..|+.+.+||.   ....+.+.+.++  +++++ +.||+||.. +.+...+.   ..++..+.+ .|+.. +..++.+ 
T Consensus       373 l~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~-~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p-~~g~~-v~ivd~~-  448 (643)
T d1pg4a_         373 RSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV-DTWWQTETGGFMITPLPGAIELKAGSATRP-FFGVQ-PALVDNE-  448 (643)
T ss_dssp             CTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEE-EEBCCGGGSSCSBCCCTTTCCBCTTCCBSB-CTTCC-EEEECTT-
T ss_pred             CCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEE-EeechhhccceEEecCCCccCCCCCccccc-cCCCE-EEEECCC-
Confidence            344778888775   345566666664  58898 999999963 22211111   112223332 23322 3333322 


Q ss_pred             CCCCCCCcccccccccccccCCCCCeEEEEEee-----cccee----------------eeecCCEEEEecccCCCCEEE
Q 046696          378 KNGEPKSLKEDQQQVLDLTDVELGQEYELVVTT-----YAGLY----------------RYRVGDILKVAGFKNKAPQFN  436 (609)
Q Consensus       378 ~~~~~~~~~~~~~~~l~~~eve~G~~yelvvTt-----~~Gly----------------RYr~GDvv~v~gf~~~~P~i~  436 (609)
                       +                .+++.|+.|||+|+.     ..|+|                +|+|||+++++    ..+.+.
T Consensus       449 -g----------------~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d----~dG~l~  507 (643)
T d1pg4a_         449 -G----------------HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRD----EDGYYW  507 (643)
T ss_dssp             -C----------------CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEEC----TTSCEE
T ss_pred             -C----------------CCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEEC----CCceEE
Confidence             1                246789999999975     23454                49999999998    478999


Q ss_pred             EEeecCeeEeccccccCHHHHHHHHHHHHhhcCCCCceEEeEEEee--cCCCCCceEEEEEEEeeCCCCCCChhhHHHHH
Q 046696          437 FVCRKNVALSIDSDKTDEVELQNAVKNAANHLSPFDASLIEYTSYA--DTSTIPGRYVLFWEISQSGATQIPPSVFEDCC  514 (609)
Q Consensus       437 f~gR~~~~l~~~GEkv~e~~v~~av~~a~~~l~~~g~~l~~f~~~~--d~~~~p~~Y~l~~E~~~~~~~~~~~~~l~~~~  514 (609)
                      |+||.+|+|+++|++|++.|||++|.+.      .+  |.+-+|+.  +.. ....-+.|+.+..  ....+.+...++.
T Consensus       508 i~GR~dd~ik~~G~ri~p~eIE~~l~~~------p~--V~eaaVvg~~d~~-~ge~~~a~Vv~~~--~~~~~~~~~~~i~  576 (643)
T d1pg4a_         508 ITGRVDDVLNVSGHRLGTAEIESALVAH------PK--IAEAAVVGIPHAI-KGQAIYAYVTLNH--GEEPSPELYAEVR  576 (643)
T ss_dssp             EEEESSSEEEETTEEEEHHHHHHHHHHS------TT--EEEEEEEEEEETT-TEEEEEEEEEECT--TCCCCHHHHHHHH
T ss_pred             EecccccEEEECCEEECHHHHHHHHHhC------CC--cceEEEEEEECCC-CCeEEEEEEEECC--CCCCCHHHHHHHH
Confidence            9999999999999999999999999762      22  33444432  221 1113346776642  2234444444455


Q ss_pred             HHHHHHhC
Q 046696          515 LSIEESLN  522 (609)
Q Consensus       515 ~~ld~~Ln  522 (609)
                      +.+.+.|.
T Consensus       577 ~~~~~~L~  584 (643)
T d1pg4a_         577 NWVRKEIG  584 (643)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHhhCC
Confidence            55555553

PyMOL of d1pg4a_

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}	Back information, alignment and structure

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}	Back information, alignment and structure

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}	Back information, alignment and structure