Citrus Sinensis ID: 046719
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 808 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FMQ1 | 816 | Pentatricopeptide repeat- | yes | no | 0.971 | 0.962 | 0.518 | 0.0 | |
| Q940A6 | 838 | Pentatricopeptide repeat- | no | no | 0.733 | 0.707 | 0.306 | 2e-85 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | no | no | 0.808 | 0.719 | 0.296 | 6e-85 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.820 | 0.887 | 0.279 | 2e-83 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.897 | 0.661 | 0.257 | 3e-82 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.809 | 0.714 | 0.284 | 8e-80 | |
| Q9SV46 | 851 | Pentatricopeptide repeat- | no | no | 0.792 | 0.752 | 0.295 | 7e-79 | |
| Q9LER0 | 940 | Pentatricopeptide repeat- | no | no | 0.722 | 0.621 | 0.285 | 1e-76 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.680 | 0.867 | 0.301 | 8e-76 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.668 | 0.966 | 0.303 | 5e-75 |
| >sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/799 (51%), Positives = 570/799 (71%), Gaps = 14/799 (1%)
Query: 20 SLSLSLSRSLCSQSSNSNHNSHGDQER-------NEQVRKIRILFQNNRTEAAQSLIKSI 72
S+S R L S S++ S +Q +E++R +R+L Q NR E A+ ++ S+
Sbjct: 22 SVSACSCRRLFSASTDPEPESQPEQAPPTNPVTGDEKLRNLRVLLQQNRIETARGVLSSL 81
Query: 73 VLSNASPFTSPHELFSLFSVSSPYYKPTFTNILLSIL-SSAKLPSEALQLYASTKADGTR 131
+ S+++PF SP ELFS FS+SSP K F+ +LLS+L + +K+ SEA L+ + + +G
Sbjct: 82 LRSDSTPFASPKELFSAFSLSSPSLKHDFSYLLLSVLLNESKMISEAADLFFALRNEGIY 141
Query: 132 LSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEI 191
S DS+ +LL+ LV+ Q+ +++F I+ FRP KF YGKA+QAAVK+ D+ + E+
Sbjct: 142 PSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLEL 201
Query: 192 FDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCK 251
F+ M+ R P+VF+YNVLI G CK K++ DAE+LFDEM R+L+P+ +TYNTL+DGYCK
Sbjct: 202 FNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCK 261
Query: 252 VGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFT 311
G EK +RERMK D +E SL+ FN+LL G KA +E+A++V KEM+ GF PD FT
Sbjct: 262 AGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFT 321
Query: 312 YSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEI 371
+S+LFDGYS E + +YE G ++N+YTCSILLNALCKEGK+E AEEI+G+E+
Sbjct: 322 FSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREM 381
Query: 372 ENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMD 431
GLVP+EV++NT++ GYCR GDL A + I+ ME G+ P+ + +N LI +FCELGEM+
Sbjct: 382 AKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEME 441
Query: 432 KAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLI 491
AE+ V +M KGVSP+V+T N LI GYGR FDKCF IL+EME++G PNVVSYG+LI
Sbjct: 442 NAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLI 501
Query: 492 NWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMG 551
N LCK KLLEA+IV +DME+RGV P +IYNMLIDG C+ G+I+DAF+F EM+K+ +
Sbjct: 502 NCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIE 561
Query: 552 PTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLEL 611
LVT+N LI+GL G++ EAED+L +I+ GL PDV TYNSLISGY G+ Q+C+ L
Sbjct: 562 LNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIAL 621
Query: 612 YENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEH 671
YE MK+ GIKP+L+TYH L+S C +EGI E+LF EM +L PDLLVYN ++HCYA H
Sbjct: 622 YEEMKRSGIKPTLKTYHLLISLCTKEGIELTERLFGEM---SLKPDLLVYNGVLHCYAVH 678
Query: 672 GDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTY 731
GD++KA L +M+++ I DK TYNSLI G L+ GKL EV+ L+++M + + P+ADTY
Sbjct: 679 GDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTY 738
Query: 732 NILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEIS- 790
NI+VKG+C +KD+ AY+WYREM E GF+ CI NEL +GLK+E + KEA+I+ SE++
Sbjct: 739 NIIVKGHCEVKDYMSAYVWYREMQEKGFLLDVCIGNELVSGLKEEWRSKEAEIVISEMNG 798
Query: 791 -IVGKDAWTNEDQSAVAKM 808
++G D +ED SA K+
Sbjct: 799 RMLG-DVTVDEDLSATEKL 816
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 317 bits (812), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 184/600 (30%), Positives = 315/600 (52%), Gaps = 7/600 (1%)
Query: 145 VRCNQYDR-----ALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSR 199
V C Q+ R ALD+F + G P K T + + V+ + ++ CE FD + K
Sbjct: 210 VYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCKG- 268
Query: 200 TRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVS 259
P+V+++ I+ FCK K+ +A KLF +M + + P VT+NT++DG G +++
Sbjct: 269 VSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAF 328
Query: 260 ALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGY 319
+E+M +E +L+ ++ L+ G +AKR+ +A V KEM GF P+ Y+ L D +
Sbjct: 329 MFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSF 388
Query: 320 SKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDE 379
+ G + + + + +G + S T + L+ CK G+ + AE ++ + + G ++
Sbjct: 389 IEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQ 448
Query: 380 VMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKR 439
F +++ C + A+ + +M ++P TLI C+ G+ KA E +
Sbjct: 449 GSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQ 508
Query: 440 MLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCK 499
L KG + +T+N L+ G G D+ F+I +E+ G + VSY +LI+ C K
Sbjct: 509 FLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKK 568
Query: 500 LLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNA 559
L EA + L +M RG+ P+ Y++LI G M ++++A +F+D+ + M P + T++
Sbjct: 569 LDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSV 628
Query: 560 LINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLG 619
+I+G CK R E ++ ++ S + P+ + YN LI Y G LEL E+MK G
Sbjct: 629 MIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKG 688
Query: 620 IKPSLRTYHPLLSG-CIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKAL 678
I P+ TY L+ G I + + LF EM L P++ Y ALI Y + G + K
Sbjct: 689 ISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVE 748
Query: 679 VLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGY 738
L EM + + P+K+TY +I G+ R+G ++E L+N+M+ KG++P + TY + GY
Sbjct: 749 CLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGY 808
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 316 bits (809), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 205/691 (29%), Positives = 340/691 (49%), Gaps = 38/691 (5%)
Query: 136 SINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGM 195
+++ LL LV+ + A++LF+++V +G RPD + Y +++ ++ DL RA E+ M
Sbjct: 194 TLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHM 253
Query: 196 EKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEF 255
E + N+ YNVLI G CK++K+ +A + ++ + L P VTY TLV G CKV EF
Sbjct: 254 EATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEF 313
Query: 256 E-------------------KVSALRERM-KRDKVEVSL---------------VMFNSL 280
E VS+L E + KR K+E +L ++N+L
Sbjct: 314 EIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNAL 373
Query: 281 LGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGF 340
+ CK ++ EA+ + M G P+ TYS+L D + + G + ++ E+ G
Sbjct: 374 IDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGL 433
Query: 341 RINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAML 400
+++ Y + L+N CK G + AE + + I L P V + +++ GYC G +N+A+
Sbjct: 434 KLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALR 493
Query: 401 AIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYG 460
+M G+AP+ TF TL+ G + A + M E V PN T N +I+GY
Sbjct: 494 LYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYC 553
Query: 461 RMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQ 520
G K F+ L+EM G+ P+ SY LI+ LC + EA++ + + N
Sbjct: 554 EEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEI 613
Query: 521 IYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQI 580
Y L+ G C G++++A EMV+R + LV + LI+G K +L ++
Sbjct: 614 CYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEM 673
Query: 581 TSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIV 640
GL PD + Y S+I S G ++ +++ M G P+ TY +++G + G V
Sbjct: 674 HDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFV 733
Query: 641 -AVEKLFNEMLQINLVPDLLVYNALIHCYAE-HGDVQKALVLHSEMVDQGIRPDKMTYNS 698
E L ++M ++ VP+ + Y + + D+QKA+ LH+ ++ +G+ + TYN
Sbjct: 734 NEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAIL-KGLLANTATYNM 792
Query: 699 LIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENG 758
LI G R+G++ E EL+ M G+ P TY ++ C D A + M E G
Sbjct: 793 LIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKG 852
Query: 759 FIPSFCIYNELTNGLKQEGKLKEAQILCSEI 789
P YN L +G G++ +A L +E+
Sbjct: 853 IRPDRVAYNTLIHGCCVAGEMGKATELRNEM 883
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 311 bits (796), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 194/694 (27%), Positives = 352/694 (50%), Gaps = 31/694 (4%)
Query: 80 FTSPHELFSL------FSVSSPYYKPTFTNILLSILSSAKLPSEALQLYASTKADGTRLS 133
+ +PH+ F+L + + + IL +++ L E L + + L
Sbjct: 71 WANPHQFFTLRCKCITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFKSLQETYDLC 130
Query: 134 LDS---INVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIG-DLKRAC 189
+ +++++ R + D+AL + GF P +Y + A ++ ++ A
Sbjct: 131 YSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAE 190
Query: 190 EIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGY 249
+F M +S+ PNVF YN+LI GFC I A LFD+M + +P VTYNTL+DGY
Sbjct: 191 NVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGY 250
Query: 250 CKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDG 309
CK+ + + L M +E +L+ +N ++ G C+ RM+E V EM G+ D
Sbjct: 251 CKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDE 310
Query: 310 FTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGK 369
TY+ L GY K G+ + ++ E+ G + T + L++++CK G + A E + +
Sbjct: 311 VTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQ 370
Query: 370 EIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGE 429
GL P+E + T+V G+ + G +N A +++M ++G +P+ +T+N LI+ C G+
Sbjct: 371 MRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGK 430
Query: 430 MDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGS 489
M+ A ++ M EKG+SP+V + +T++ G+ R D+ ++ EM G+KP+ ++Y S
Sbjct: 431 MEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSS 490
Query: 490 LINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKRE 549
LI C+ + EA + ++M G+ P+ Y LI+ C G ++ A + +EMV++
Sbjct: 491 LIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKG 550
Query: 550 MGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCL 609
+ P +VT++ LINGL K+ R EA+ +L ++ P +TY++LI S++
Sbjct: 551 VLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNI------- 603
Query: 610 ELYENMKKLGIKPSLRTYHPLLSG-CIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCY 668
++ L+ G C++ + +++F ML N PD YN +IH +
Sbjct: 604 -------------EFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGH 650
Query: 669 AEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA 728
GD++KA L+ EMV G +T +L+ +EGK++E+ ++ + + +A
Sbjct: 651 CRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEA 710
Query: 729 DTYNILVKGYCNLKDFGGAYIWYREMFENGFIPS 762
+ +LV+ + EM ++GF+P+
Sbjct: 711 EQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPN 744
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 306 bits (785), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 188/729 (25%), Positives = 352/729 (48%), Gaps = 4/729 (0%)
Query: 54 RILFQNNRTEAAQSLIKSIVLSNASPFTSPHELFSLFSVSSPYYKPTFTNILLSILSSAK 113
IL + + A+ ++K + L + L + + + + P+ +IL+ +
Sbjct: 80 HILVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCNS--NPSVYDILIRVYLREG 137
Query: 114 LPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYG 173
+ ++L+++ G S+ + N +L +V+ + E++ PD T+
Sbjct: 138 MIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFN 197
Query: 174 KAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQR 233
+ G +++ + MEKS P + YN ++ +CK+ + + A +L D M +
Sbjct: 198 ILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSK 257
Query: 234 KLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEA 293
+ TYN L+ C+ K L M++ + + V +N+L+ GF ++ A
Sbjct: 258 GVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIA 317
Query: 294 KSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNA 353
+ EM + G P+ T++ L DG+ G+ + + ++ + +G + + +LL+
Sbjct: 318 SQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDG 377
Query: 354 LCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPN 413
LCK + ++A + NG+ + + ++ G C+ G L+ A++ + +M G+ P+
Sbjct: 378 LCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPD 437
Query: 414 CITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILE 473
+T++ LI+ FC++G A+E V R+ G+SPN +TLI RMG + +I E
Sbjct: 438 IVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYE 497
Query: 474 EMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMG 533
M G + ++ L+ LCK K+ EAE ++ M + G+LPN ++ LI+G G
Sbjct: 498 AMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSG 557
Query: 534 RIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYN 593
AF FDEM K PT T+ +L+ GLCK G + EAE L + + D + YN
Sbjct: 558 EGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYN 617
Query: 594 SLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQI- 652
+L++ G+ K + L+ M + I P TY L+SG R+G + LF + +
Sbjct: 618 TLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEAR 677
Query: 653 -NLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSE 711
N++P+ ++Y + + G + + +M + G PD +T N++I G+ R GK+ +
Sbjct: 678 GNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEK 737
Query: 712 VKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTN 771
+L+ +M + P TYNIL+ GY KD +++ YR + NG +P + L
Sbjct: 738 TNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVL 797
Query: 772 GLKQEGKLK 780
G+ + L+
Sbjct: 798 GICESNMLE 806
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (764), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 194/682 (28%), Positives = 337/682 (49%), Gaps = 28/682 (4%)
Query: 133 SLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIF 192
S DS+ L L C + ++ DE + ++ Y + + + G + +++
Sbjct: 152 SCDSVGDALYVLDLCRKMNK-----DERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVY 206
Query: 193 DGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKV 252
M + + PN++ YN +++G+CK + +A + ++ + L P TY +L+ GYC+
Sbjct: 207 MEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQR 266
Query: 253 GEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTY 312
+ + + M + V + L+ G C A+R++EA + +M+ P TY
Sbjct: 267 KDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTY 326
Query: 313 SMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIE 372
++L + L +E+ G + N +T ++L+++LC + K E A E++G+ +E
Sbjct: 327 TVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLE 386
Query: 373 NGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDK 432
GL+P+ + +N +++GYC+ G + A+ ++ ME+ L+PN T+N LI +C+ + K
Sbjct: 387 KGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHK 445
Query: 433 AEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLIN 492
A + +MLE+ V P+V T N+LIDG R G+FD +++L M + G+ P+ +Y S+I+
Sbjct: 446 AMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMID 505
Query: 493 WLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGP 552
LCK ++ EA + +E +GV PN +Y LIDG C G++ +A ++M+ + P
Sbjct: 506 SLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLP 565
Query: 553 TLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELY 612
+TFNALI+GLC G++ EA + ++ GL P V T LI G +
Sbjct: 566 NSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRF 625
Query: 613 ENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEH 671
+ M G KP TY + REG ++ E + +M + + PDL Y++LI Y +
Sbjct: 626 QQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDL 685
Query: 672 GDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVK------------------ 713
G A + M D G P + T+ SLI HL E K + K
Sbjct: 686 GQTNFAFDVLKRMRDTGCEPSQHTFLSLI-KHLLEMKYGKQKGSEPELCAMSNMMEFDTV 744
Query: 714 -ELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFEN-GFIPSFCIYNELTN 771
EL+ M + P A +Y L+ G C + + A + M N G PS ++N L +
Sbjct: 745 VELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLS 804
Query: 772 GLKQEGKLKEAQILCSEISIVG 793
+ K EA + ++ VG
Sbjct: 805 CCCKLKKHNEAAKVVDDMICVG 826
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980, mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (756), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 191/646 (29%), Positives = 321/646 (49%), Gaps = 6/646 (0%)
Query: 95 PYYKPTFTNILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRAL 154
P++ + N LS L +EA +LY+ A G + +L+ +R + AL
Sbjct: 196 PFFP--YVNRTLSALVQRNSLTEAKELYSRMVAIGVDGDNVTTQLLMRASLREEKPAEAL 253
Query: 155 DLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGM-EKSRTRPNVFVYNVLISG 213
++ + G PD Y AVQA K DL A + M EK P+ Y +I
Sbjct: 254 EVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILA 313
Query: 214 FCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVS 273
K+ + DA +L DEM + V +L+ G+CK + L ++M+++ +
Sbjct: 314 SVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPN 373
Query: 274 LVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYE 333
V F+ L+ F K ME+A K+ME G P F + G+ K E + L++
Sbjct: 374 SVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFD 433
Query: 334 ELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTG 393
E G N + C+ +L+ LCK+GK + A E++ K G+ P+ V +N ++ G+CR
Sbjct: 434 ESFETGL-ANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQK 492
Query: 394 DLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNN 453
+++ A + + GL PN T++ LID + A E V M + N
Sbjct: 493 NMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQ 552
Query: 454 TLIDGYGRMGHFDKCFQILEEM-ENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMEN 512
T+I+G ++G K ++L M E + + +SY S+I+ K+ ++ A ++M
Sbjct: 553 TIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCG 612
Query: 513 RGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVME 572
G+ PN Y L++G C R+ A + DEM + + + + ALI+G CK+ +
Sbjct: 613 NGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMES 672
Query: 573 AEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLS 632
A + ++ GLNP YNSLISG+ +LG+ L+LY+ M K G++ L TY L+
Sbjct: 673 ASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLID 732
Query: 633 GCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP 691
G +++G ++ +L+ EM + LVPD ++Y +++ ++ G K + + EM + P
Sbjct: 733 GLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTP 792
Query: 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKG 737
+ + YN++I GH REG L E L ++M KG++P T++ILV G
Sbjct: 793 NVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSG 838
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LER0|PP381_ARATH Pentatricopeptide repeat-containing protein At5g14770, mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 288 bits (737), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 168/588 (28%), Positives = 303/588 (51%), Gaps = 4/588 (0%)
Query: 156 LFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFC 215
L E+ M P+ TY V + K + A ++ M ++ VY VL+ G
Sbjct: 283 LLREMEEMSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLF 342
Query: 216 KEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLV 275
K +R+AEK F + + VP VTY LVDG CK G+ + +M V ++V
Sbjct: 343 KAGDLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVV 402
Query: 276 MFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEEL 335
++S++ G+ K +EEA S+ ++ME P+GFTY + DG K G E + L +E+
Sbjct: 403 TYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEM 462
Query: 336 SGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDL 395
G N+Y L+N L + G+++ + +V + G+ D++ + +++ + + GD
Sbjct: 463 RLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDE 522
Query: 396 NRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWV-KRMLEKGVSPNVKTNNT 454
A+ ++M+ G+ + +++N LI + G++ +W K M EKG+ P++ T N
Sbjct: 523 EAALAWAEEMQERGMPWDVVSYNVLISGMLKFGKV--GADWAYKGMREKGIEPDIATFNI 580
Query: 455 LIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRG 514
+++ + G + ++ ++M++ G+KP+++S ++ LC++ K+ EA +L M
Sbjct: 581 MMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLME 640
Query: 515 VLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAE 574
+ PN Y + +D S R FK + ++ + + +N LI LCK G +A
Sbjct: 641 IHPNLTTYRIFLDTSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAA 700
Query: 575 DMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGC 634
++ + + G PD +T+NSL+ GY +K L Y M + GI P++ TY+ ++ G
Sbjct: 701 MVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGL 760
Query: 635 IREGIVA-VEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDK 693
G++ V+K +EM + PD YNALI A+ G+++ ++ ++ EM+ G+ P
Sbjct: 761 SDAGLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKT 820
Query: 694 MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNL 741
TYN LI GK+ + +EL+ +M +G+ P TY ++ G C L
Sbjct: 821 STYNVLISEFANVGKMLQARELLKEMGKRGVSPNTSTYCTMISGLCKL 868
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (730), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 166/551 (30%), Positives = 288/551 (52%), Gaps = 1/551 (0%)
Query: 185 LKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNT 244
L A +F GM KSR P++ +N L+S K KK L ++M + ++V TYN
Sbjct: 66 LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNI 125
Query: 245 LVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHG 304
L++ +C+ + AL +M + E S+V +SLL G+C KR+ +A ++ +M G
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185
Query: 305 FDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAE 364
+ PD T++ L G +AL + + RG + N T +++N LCK G ++A
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 245
Query: 365 EIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKF 424
++ K + D V+FNTI+ C+ ++ A+ ++ME G+ PN +T+++LI
Sbjct: 246 NLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 305
Query: 425 CELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNV 484
C G A + + M+EK ++PN+ T N LID + + G F + ++ ++M + P++
Sbjct: 306 CSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDI 365
Query: 485 VSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDE 544
+Y SL+N C +L +A+ + + M ++ P+ YN LI G C R++D + F E
Sbjct: 366 FTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFRE 425
Query: 545 MVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGS 604
M R + VT+ LI GL G A+ + Q+ S G+ PD++TY+ L+ G + G
Sbjct: 426 MSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK 485
Query: 605 SQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIV-AVEKLFNEMLQINLVPDLLVYNA 663
+K LE+++ M+K IK + Y ++ G + G V LF + + P+++ YN
Sbjct: 486 LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNT 545
Query: 664 LIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKG 723
+I +Q+A L +M + G P+ TYN+LI HLR+G + EL+ +M+
Sbjct: 546 MISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCR 605
Query: 724 LIPKADTYNIL 734
+ A T ++
Sbjct: 606 FVGDASTIGLV 616
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 283 bits (723), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 164/541 (30%), Positives = 283/541 (52%), Gaps = 1/541 (0%)
Query: 195 MEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGE 254
M KSR P++F +N L+S K KK L ++M + + TYN L++ +C+ +
Sbjct: 1 MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60
Query: 255 FEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSM 314
AL +M + E S+V +SLL G+C KR+ +A ++ +M G+ PD T++
Sbjct: 61 ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 120
Query: 315 LFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENG 374
L G +AL + + RG + N T +++N LCK G +++A ++ K
Sbjct: 121 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK 180
Query: 375 LVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAE 434
+ D V+FNTI+ C+ ++ A+ ++ME G+ PN +T+++LI C G A
Sbjct: 181 IEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDAS 240
Query: 435 EWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWL 494
+ + M+EK ++PN+ T N LID + + G F + ++ ++M + P++ +Y SLIN
Sbjct: 241 QLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGF 300
Query: 495 CKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTL 554
C +L +A+ + + M ++ P+ YN LI G C R++D + F EM R +
Sbjct: 301 CMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT 360
Query: 555 VTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYEN 614
VT+ LI GL G A+ + Q+ S G+ PD++TY+ L+ G + G +K LE+++
Sbjct: 361 VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDY 420
Query: 615 MKKLGIKPSLRTYHPLLSGCIREGIVAV-EKLFNEMLQINLVPDLLVYNALIHCYAEHGD 673
M+K IK + Y ++ G + G V LF + + P+++ YN +I
Sbjct: 421 MQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRL 480
Query: 674 VQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNI 733
+Q+A L +M + G PD TYN+LI HLR+G + EL+ +M+ + A T +
Sbjct: 481 LQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGL 540
Query: 734 L 734
+
Sbjct: 541 V 541
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 808 | ||||||
| 255575351 | 817 | pentatricopeptide repeat-containing prot | 0.990 | 0.979 | 0.616 | 0.0 | |
| 359481971 | 819 | PREDICTED: pentatricopeptide repeat-cont | 0.943 | 0.930 | 0.603 | 0.0 | |
| 224113307 | 707 | predicted protein [Populus trichocarpa] | 0.872 | 0.997 | 0.622 | 0.0 | |
| 15239874 | 816 | pentatricopeptide repeat-containing prot | 0.971 | 0.962 | 0.518 | 0.0 | |
| 297807255 | 1202 | hypothetical protein ARALYDRAFT_350399 [ | 0.969 | 0.651 | 0.510 | 0.0 | |
| 356503775 | 777 | PREDICTED: pentatricopeptide repeat-cont | 0.929 | 0.966 | 0.513 | 0.0 | |
| 125561476 | 687 | hypothetical protein OsI_29163 [Oryza sa | 0.710 | 0.835 | 0.405 | 1e-125 | |
| 37572999 | 691 | putative fertility restorer homologue [O | 0.710 | 0.830 | 0.405 | 1e-124 | |
| 357141282 | 686 | PREDICTED: pentatricopeptide repeat-cont | 0.659 | 0.776 | 0.435 | 1e-123 | |
| 242079087 | 695 | hypothetical protein SORBIDRAFT_07g02001 | 0.694 | 0.807 | 0.401 | 1e-122 |
| >gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 995 bits (2573), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/805 (61%), Positives = 624/805 (77%), Gaps = 5/805 (0%)
Query: 6 RHPPKFPPIFLPSLSLSLSLSRSLCSQSSNSNHNSHGDQERNEQVRKIRILFQNNRTEAA 65
R+ P P+F PS S + S +Q++ SN NS DQER EQV K++IL Q N EAA
Sbjct: 16 RNNPNPFPVF-PSFSTIPTPEESEQTQNTLSN-NSSKDQERYEQVNKLQILLQQNCNEAA 73
Query: 66 QSLIKSIVLSNASPFTSPHELFSLFSVSSPYYKPTFTNILLSILSSAKLPSEALQLYAST 125
SL KS++L+ S F+SP +LFS FS S + T +++LLS+ +K+ EA++LY
Sbjct: 74 YSLAKSLILTK-STFSSPSDLFSCFSACSIPLRITLSDMLLSVCCKSKMLREAVELYEFM 132
Query: 126 KADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDL 185
+ DG SL S+++L CLV Q+ + +DLF EI GFR D F Y KA+QAAVK+ +L
Sbjct: 133 RRDGKLPSLVSLSLLFSCLVNEKQFVKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNL 192
Query: 186 KRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTL 245
K E D M K RPNVF+YNVLI G C+EK+IRDAEK+FDEMC LV + VTYNTL
Sbjct: 193 KMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTL 252
Query: 246 VDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGF 305
+DGYCKVGE + +RERMK V +++ FNSLL G CK ++M+EA+S+ KEME +GF
Sbjct: 253 IDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGF 312
Query: 306 DPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEE 365
PDG+TYS+LFDG +C DG G M LYE+ + +G RIN+YT SILLN LCK+GKVE AEE
Sbjct: 313 MPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEE 372
Query: 366 IVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFC 425
I+ K ENGLV DEV++NT V+GYCR GD+N+A+L I++ME+ GL PN ITFN+LIDKFC
Sbjct: 373 ILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFC 432
Query: 426 ELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVV 485
++ EMDKAEEWVK+M EKGV+P+V+T NTLIDGYG++ FD+CFQILE+ME G+KPNVV
Sbjct: 433 DMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVV 492
Query: 486 SYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEM 545
SYGSLIN LCKD K+LEAEIVL+DM RGVLPNAQ+YNMLIDGSC +G++KDA +FFDEM
Sbjct: 493 SYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEM 552
Query: 546 VKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSS 605
++ E+ PTLVT+N LI+GLCKKG++ EAED L QITSSG +PDVITYNSLISGY++ G+
Sbjct: 553 MRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNV 612
Query: 606 QKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALI 665
KCL LYE MK LGIKP++RTYHPL+SGC +EGI VEKL+NEMLQ+NL+PD +VYNA+I
Sbjct: 613 SKCLGLYETMKNLGIKPTVRTYHPLISGCSKEGIELVEKLYNEMLQMNLLPDRVVYNAMI 672
Query: 666 HCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLI 725
HCYAE G+ QKA LH M+DQGI PDKMTYNSLI GH REGKLS +K+LVN+MK K L
Sbjct: 673 HCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELA 732
Query: 726 PKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQIL 785
PKADTY+ILVKG+C+LKDF GAY+WYREM EN F+P+ I NELT GL+QEG+L+E Q++
Sbjct: 733 PKADTYDILVKGHCDLKDFSGAYVWYREMVENNFLPNASICNELTAGLEQEGRLQEVQVI 792
Query: 786 CSEISIVG-KDAW-TNEDQSAVAKM 808
CSE+++ G + W + E+ SAVAKM
Sbjct: 793 CSEMNVKGIINHWPSKEEISAVAKM 817
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 967 bits (2501), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/764 (60%), Positives = 593/764 (77%), Gaps = 2/764 (0%)
Query: 43 DQERNEQVRKIRILFQNNRTEAAQSLIKSIVLSNASPFTSPHELFSLFSVSSPYYKPTFT 102
+Q R+E V+K++ L Q RTE A+ LI+S++L SPF+SP L++LFS+SS KP F+
Sbjct: 57 EQARHEHVQKLQTLLQQGRTETARRLIRSMLLPK-SPFSSPSHLYTLFSLSSTPMKPLFS 115
Query: 103 NILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVC 162
++LLSI S +K+ SE+ +LY K DG S+ S+N+ LE LV +Y+ L LF EIV
Sbjct: 116 DMLLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVE 175
Query: 163 MGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRD 222
G RPD+F YGKA+QAAVK+GDLKRA E+ M++ P VFVYNV+I G CKEK+++D
Sbjct: 176 SGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKD 235
Query: 223 AEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLG 282
AEKLFDEM R++ P R+TYNTL+DGYCKVG+ E+ +RERMK + VE +++ FNSLL
Sbjct: 236 AEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLN 295
Query: 283 GFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRI 342
G C+A+ MEEA+ V +EME +GF PD FTY+ LFDG+ KCG+ + + L EE +G +I
Sbjct: 296 GLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQI 355
Query: 343 NSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAI 402
YTCSILLNALCKEG +E AEE++ K +ENGL P V FNTIV+GYC+ GD+N+A I
Sbjct: 356 LDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTI 415
Query: 403 QQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRM 462
++ME GL PN +T+N+L+ KFCE+ M++AE+ +K+M+EKGV PNV+T NTLIDGYGR
Sbjct: 416 EKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRS 475
Query: 463 GHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIY 522
FD+CFQILEEME G+KPNV+SYG LIN LCKD +LEAE++L DM +RGV+PNAQIY
Sbjct: 476 CLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIY 535
Query: 523 NMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITS 582
NMLIDGSC G++KDAF+FFDEMV RE+ PTLVT+N LINGLCKKG+VMEAE++ +IT
Sbjct: 536 NMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITR 595
Query: 583 SGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAV 642
GL+ DVITYNSLISGYSS G+ QK LELYE MKK GIKP+L TYH L++GC +EG+V V
Sbjct: 596 KGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEGLVLV 655
Query: 643 EKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFG 702
EK++ EMLQ+NLVPD ++YNALIHCY EHGDVQKA LHS M QGI+PDKMTYN LI G
Sbjct: 656 EKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILG 715
Query: 703 HLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPS 762
H +EG++ +VK LVNDMK++GLIPK +TY+IL+ G+C LKDF GAY+WYREMFENGF PS
Sbjct: 716 HFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTPS 775
Query: 763 FCIYNELTNGLKQEGKLKEAQILCSEISIVGK-DAWTNEDQSAV 805
I + L GL++EG+ +A ++CSE+++ GK D +ED SAV
Sbjct: 776 VSICDNLITGLREEGRSHDADVICSEMNMKGKDDCRADEDASAV 819
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa] gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 925 bits (2390), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/707 (62%), Positives = 563/707 (79%), Gaps = 2/707 (0%)
Query: 104 ILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCM 163
+LLS+ S +K+ S+ +LY + +G S + +++E LV ++D LDLF E+V +
Sbjct: 1 MLLSVCSESKMHSQVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGL 60
Query: 164 GFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDA 223
GFRPDK YG+A+ AAVK+GDLK A E+F+ M++ + PNVFVYNVLI G CKEK+IRDA
Sbjct: 61 GFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDA 120
Query: 224 EKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGG 283
EKLF EM R LVP RVT+NTL+DGYCK GE + LRERMK++KVE S++ FNSLL G
Sbjct: 121 EKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSG 180
Query: 284 FCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGV-MALYEELSGRGFRI 342
CKA+R+EEA+ + E++ +GF PDGFTYS++FDG K DG G + LY E G+G +I
Sbjct: 181 LCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKI 240
Query: 343 NSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAI 402
++YTCSILLN LCKEGKVE AEE++ +E+GLVP EV++NTIV+GYC+ GD++RA+L I
Sbjct: 241 DNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTI 300
Query: 403 QQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRM 462
+QME+ GL PNCI FN++IDKFCE+ +DKAEEWVK+M+ KG++P+V+T N LIDGYGR+
Sbjct: 301 EQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRL 360
Query: 463 GHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIY 522
F +CFQILEEME +G KPNV+SYGSLIN LCKD K+LEAE+VL+DM RGVLPNA IY
Sbjct: 361 CVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIY 420
Query: 523 NMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITS 582
NMLIDGSCT+G++++A +FFDEM K +G T+VT+N+LI GLCK G++ EAE+M ITS
Sbjct: 421 NMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITS 480
Query: 583 SGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAV 642
+G PDVITYNSLISGYS+ G+SQKCLELYE MKKLG+KP++ T+HPL+SGC +EGI
Sbjct: 481 TGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEGIKLK 540
Query: 643 EKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFG 702
E LFNEMLQ+NL PD +VYNA+IHCY E G VQKA L EMVD G+RPD TYNSLI G
Sbjct: 541 ETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILG 600
Query: 703 HLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPS 762
HL+EGKLSE K+LV+DMK KGLIP+ADTY++L++G+C+LKDF GAY+WYREM ENGF+P+
Sbjct: 601 HLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPN 660
Query: 763 FCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAW-TNEDQSAVAKM 808
CI NEL+ GL+++G+L+EAQ +CSE+ G D TNED S VAKM
Sbjct: 661 VCICNELSTGLRKDGRLQEAQSICSEMIANGMDNLDTNEDLSDVAKM 707
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g12100, mitochondrial; Flags: Precursor gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana] gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana] gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana] gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana] gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/799 (51%), Positives = 570/799 (71%), Gaps = 14/799 (1%)
Query: 20 SLSLSLSRSLCSQSSNSNHNSHGDQER-------NEQVRKIRILFQNNRTEAAQSLIKSI 72
S+S R L S S++ S +Q +E++R +R+L Q NR E A+ ++ S+
Sbjct: 22 SVSACSCRRLFSASTDPEPESQPEQAPPTNPVTGDEKLRNLRVLLQQNRIETARGVLSSL 81
Query: 73 VLSNASPFTSPHELFSLFSVSSPYYKPTFTNILLSIL-SSAKLPSEALQLYASTKADGTR 131
+ S+++PF SP ELFS FS+SSP K F+ +LLS+L + +K+ SEA L+ + + +G
Sbjct: 82 LRSDSTPFASPKELFSAFSLSSPSLKHDFSYLLLSVLLNESKMISEAADLFFALRNEGIY 141
Query: 132 LSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEI 191
S DS+ +LL+ LV+ Q+ +++F I+ FRP KF YGKA+QAAVK+ D+ + E+
Sbjct: 142 PSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLEL 201
Query: 192 FDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCK 251
F+ M+ R P+VF+YNVLI G CK K++ DAE+LFDEM R+L+P+ +TYNTL+DGYCK
Sbjct: 202 FNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCK 261
Query: 252 VGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFT 311
G EK +RERMK D +E SL+ FN+LL G KA +E+A++V KEM+ GF PD FT
Sbjct: 262 AGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFT 321
Query: 312 YSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEI 371
+S+LFDGYS E + +YE G ++N+YTCSILLNALCKEGK+E AEEI+G+E+
Sbjct: 322 FSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREM 381
Query: 372 ENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMD 431
GLVP+EV++NT++ GYCR GDL A + I+ ME G+ P+ + +N LI +FCELGEM+
Sbjct: 382 AKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEME 441
Query: 432 KAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLI 491
AE+ V +M KGVSP+V+T N LI GYGR FDKCF IL+EME++G PNVVSYG+LI
Sbjct: 442 NAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLI 501
Query: 492 NWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMG 551
N LCK KLLEA+IV +DME+RGV P +IYNMLIDG C+ G+I+DAF+F EM+K+ +
Sbjct: 502 NCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIE 561
Query: 552 PTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLEL 611
LVT+N LI+GL G++ EAED+L +I+ GL PDV TYNSLISGY G+ Q+C+ L
Sbjct: 562 LNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIAL 621
Query: 612 YENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEH 671
YE MK+ GIKP+L+TYH L+S C +EGI E+LF EM +L PDLLVYN ++HCYA H
Sbjct: 622 YEEMKRSGIKPTLKTYHLLISLCTKEGIELTERLFGEM---SLKPDLLVYNGVLHCYAVH 678
Query: 672 GDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTY 731
GD++KA L +M+++ I DK TYNSLI G L+ GKL EV+ L+++M + + P+ADTY
Sbjct: 679 GDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTY 738
Query: 732 NILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEIS- 790
NI+VKG+C +KD+ AY+WYREM E GF+ CI NEL +GLK+E + KEA+I+ SE++
Sbjct: 739 NIIVKGHCEVKDYMSAYVWYREMQEKGFLLDVCIGNELVSGLKEEWRSKEAEIVISEMNG 798
Query: 791 -IVGKDAWTNEDQSAVAKM 808
++G D +ED SA K+
Sbjct: 799 RMLG-DVTVDEDLSATEKL 816
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp. lyrata] gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 822 bits (2122), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/803 (51%), Positives = 567/803 (70%), Gaps = 20/803 (2%)
Query: 20 SLSLSLSRSLCSQSSNSNHNSH-----------GDQERNEQVRKIRILFQNNRTEAAQSL 68
S S S S L S S++ S GD+ER+E++R +R+L Q NR E A+ +
Sbjct: 391 SFSASCSCRLFSASTDPESESQPAQAPPTNPVTGDEERHEKLRNLRVLLQQNRIETARGV 450
Query: 69 IKSIVLSNASPFTSPHELFSLFSVSSPYYKPTFTNILLSIL-SSAKLPSEALQLYASTKA 127
+ S++ S+++PFTSP ELFS FS+SSP K F+ +LLS+L + +K+ SEA L+ + +
Sbjct: 451 LYSLLRSDSAPFTSPKELFSAFSLSSPSLKHDFSYLLLSVLLNESKMISEAADLFFALRN 510
Query: 128 DGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKR 187
+G S DS+ +LL+ LV+ Q+ +++F I+ FRP KF YGKA+QAAVK+ D+ +
Sbjct: 511 EGIFPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGK 570
Query: 188 ACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVD 247
E+F+ M+ R P VF+YNVLI G CK ++++DAE+LFDEM R+L+P+ +TYNTL+D
Sbjct: 571 GLELFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNTLID 630
Query: 248 GYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDP 307
GYCK G EK +RERMK D +E SL+ FN+LL G KA +E+A++V EM+ GF P
Sbjct: 631 GYCKDGNPEKSFKVRERMKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVP 690
Query: 308 DGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIV 367
D FT+S+LFDGYS + + +YE G ++N+YTCSILLNALCKEG++E AEEI+
Sbjct: 691 DAFTFSILFDGYSSNDKADAALGVYETAVDSGLKMNAYTCSILLNALCKEGQIEKAEEIL 750
Query: 368 GKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCEL 427
G+E+ GLVP+EV++NT++ GY R GDL A + I ME G+ P+ + +N LI FCEL
Sbjct: 751 GREMAKGLVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCEL 810
Query: 428 GEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSY 487
G+M+ AE+ V +M KGVSP+V+T N LI GYGR FDKCF +L+EME++G PNVVSY
Sbjct: 811 GDMENAEQEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSY 870
Query: 488 GSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVK 547
G+LIN LCK KLLEA+IV +DME+RGV PN +IYNMLIDG C+ G+I+DAF+F +EM K
Sbjct: 871 GTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFK 930
Query: 548 REMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQK 607
+ + LVT+N LI+GL G++ EAEDML +I+ GL PDV TYNSLISGY G+ Q+
Sbjct: 931 KGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISRKGLKPDVFTYNSLISGYRFAGNVQR 990
Query: 608 CLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHC 667
C+ LYE MK GIKP+L+TYH L+S C +EGI +K+F EM +L PDLLVYN ++HC
Sbjct: 991 CIALYEEMKTSGIKPTLKTYHLLISLCTKEGIELTKKIFGEM---SLQPDLLVYNGVLHC 1047
Query: 668 YAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK 727
YA HGD+ KA L +M+++ I DK TYNSLI G L+ GKL EV+ L+++MK + + P+
Sbjct: 1048 YAVHGDMDKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMKAREMEPE 1107
Query: 728 ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCS 787
ADTY+I+VKG+C +KD+ GAY+WYREM E G + CI +EL +GLK+E + KEA+ + S
Sbjct: 1108 ADTYDIIVKGHCEMKDYMGAYVWYREMQEKGLLLDVCIGDELVSGLKEEWRSKEAENVIS 1167
Query: 788 EISIVGK---DAWTNEDQSAVAK 807
E++ G+ D +ED SA +
Sbjct: 1168 EMN--GRKLGDVIVDEDLSATER 1188
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/765 (51%), Positives = 542/765 (70%), Gaps = 14/765 (1%)
Query: 29 LCSQSSNSNHNSHGDQERNEQVRKIRILFQNNRTEAAQSLIKSIVLSNASPFTSPHELFS 88
CSQS + Q+R ++V+K+ L RT A+ ++S++L+ + F+S EL +
Sbjct: 24 FCSQSLTLCESDPQYQKRLQKVQKLETLISRGRTITARRFLRSLLLTKTA-FSSLSELHA 82
Query: 89 LFSVSSPYYKPTFTNILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCN 148
S KP F++ LL + S +K+ EA LY++ + DG S S+N LL LV
Sbjct: 83 HVS------KPFFSDNLLWLCSVSKMLDEATDLYSTMRKDGFVPSTRSVNRLLRTLVDSR 136
Query: 149 QYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYN 208
+++ L +F +++ G RPD YGKAVQAAV + DL + E+ M K P+VF YN
Sbjct: 137 HFEKTLAVFADVIDSGTRPDAVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYN 196
Query: 209 VLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRD 268
+++ G CK ++I+DA KLFDEM QR +VP VTYNTL+DGYCKVG E+ +ERMK
Sbjct: 197 LVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQ 256
Query: 269 KVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGV 328
VE +LV +NSLL G C + R+++A+ V EME GF P GF S +FD +S +G G
Sbjct: 257 NVECNLVTYNSLLNGLCGSGRVDDAREVLLEMEGSGFLPGGF-LSFVFDDHS---NGAGD 312
Query: 329 MALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSG 388
L++ G+ RI+ T ILLN LC+ G++E AEE++ K +ENG+ P ++ +N +V+
Sbjct: 313 DGLFD---GKEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNA 369
Query: 389 YCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPN 448
YC+ GD+ +A+L +QME GL PN ITFNT+I KFCE GE+D AE WV+RM+EKGVSP
Sbjct: 370 YCQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPT 429
Query: 449 VKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLK 508
V+T N+LI+GYG+ GHF +CF+ L+EM+ +G+KPNV+SYGSLIN LCKD KL++AEIVL
Sbjct: 430 VETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLA 489
Query: 509 DMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKG 568
DM RGV PNA+IYNMLI+ SC++ ++KDAF+FFDEM++ + TLVT+N LINGL + G
Sbjct: 490 DMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNG 549
Query: 569 RVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYH 628
RV +AED+ Q+ G NPDVITYNSLISGY+ ++QKCLELY+ MK LGIKP++ T+H
Sbjct: 550 RVKKAEDLFLQMAGKGCNPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFH 609
Query: 629 PLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQG 688
PL+ C +EG+V ++K+F EMLQ++LVPD VYN +I+ YAE G+V KA+ LH +MVDQG
Sbjct: 610 PLIYACRKEGVVTMDKMFQEMLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQG 669
Query: 689 IRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAY 748
+ DK+TYNSLI +LR+ ++SE+K LV+DMK KGL+PK DTYNIL+KG C+LKDF GAY
Sbjct: 670 VDCDKVTYNSLILAYLRDRRVSEIKHLVDDMKAKGLVPKVDTYNILIKGLCDLKDFNGAY 729
Query: 749 IWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVG 793
WYREM E G + + + +L +GL++EG L+EAQI+ SE+SI G
Sbjct: 730 FWYREMVERGLLLNVSMCYQLISGLREEGMLREAQIVSSELSIGG 774
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 235/580 (40%), Positives = 358/580 (61%), Gaps = 6/580 (1%)
Query: 113 KLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDL---FDEIVCMGFRPDK 169
+LP AL+L S AD R L S++ L R D+ F + G RPD
Sbjct: 102 RLPDGALRLL-SDLADEARAPLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDT 160
Query: 170 FTYGKAVQAAVKIGDLKRACEIFDGMEK-SRTRPNVFVYNVLISGFCKEKKIRDAEKLFD 228
F + KAVQA V GDL A + M + PN F YNV+I+G + + DA ++FD
Sbjct: 161 FAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFD 220
Query: 229 EMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAK 288
EM +R ++P +TYNT++DG+ K G+ E +LR++M ++ + + +N LL G C+A
Sbjct: 221 EMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAG 280
Query: 289 RMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCS 348
RM E ++ EM + PDGFTYS+LFDG S+ GD + +++L+ + G I YTCS
Sbjct: 281 RMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCS 340
Query: 349 ILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENH 408
ILLN LCK+GKV IAEE++ + GLVP V++NT+++GYC+TG+L A QM++
Sbjct: 341 ILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSR 400
Query: 409 GLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKC 468
+ P+ IT+N LI+ C+ + A++ + M + GV+P V+T NTLID YGR G +KC
Sbjct: 401 HIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKC 460
Query: 469 FQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDG 528
F +L EM+ +G+KPNVVSYGS++N CK+ K+ EA +L DM ++ VLPNAQ+YN +ID
Sbjct: 461 FIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDA 520
Query: 529 SCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPD 588
G AF ++M + P++VT+N LI GLC + ++ EAE+++ +++ L PD
Sbjct: 521 YVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPD 580
Query: 589 VITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFN 647
++YN+LIS G+ K L+L + M K GIK ++RTYH L+SG G ++ +E L+
Sbjct: 581 AVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQ 640
Query: 648 EMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQ 687
+M+Q N+VP ++N ++ Y+++G+ KA L EM+ +
Sbjct: 641 KMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQK 680
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group] gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/580 (40%), Positives = 356/580 (61%), Gaps = 6/580 (1%)
Query: 113 KLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDL---FDEIVCMGFRPDK 169
+LP AL+L S AD R L S++ L R D+ F + G RPD
Sbjct: 106 RLPDGALRLL-SDLADEARAPLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDT 164
Query: 170 FTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRP-NVFVYNVLISGFCKEKKIRDAEKLFD 228
F + KAVQA V GDL A + M + P N F YNV+I+G + + DA ++FD
Sbjct: 165 FAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFD 224
Query: 229 EMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAK 288
EM +R ++P +TYNT++DG+ K G+ E LR++M ++ + + +N LL G C+A
Sbjct: 225 EMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAG 284
Query: 289 RMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCS 348
RM E ++ EM + PDGFTYS+LFDG S+ GD + +++L+ + G I YTCS
Sbjct: 285 RMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCS 344
Query: 349 ILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENH 408
ILLN LCK+GKV IAEE++ + GLVP V++NT+++GYC+TG+L A QM++
Sbjct: 345 ILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSR 404
Query: 409 GLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKC 468
+ P+ IT+N LI+ C+ + A++ + M + GV+P V+T NTLID YGR G +KC
Sbjct: 405 HIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKC 464
Query: 469 FQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDG 528
F +L EM+ +G+KPNVVSYGS++N CK+ K+ EA +L DM ++ VLPNAQ+YN +ID
Sbjct: 465 FIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDA 524
Query: 529 SCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPD 588
G AF ++M + P++VT+N LI GLC + ++ EAE+++ +++ L PD
Sbjct: 525 YVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPD 584
Query: 589 VITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFN 647
++YN+LIS G+ K L+L + M K GIK ++RTYH L+SG G + +E L+
Sbjct: 585 AVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQ 644
Query: 648 EMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQ 687
+M+Q N+VP ++N ++ Y+++G+ KA L EM+ +
Sbjct: 645 KMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQK 684
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100, mitochondrial-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 451 bits (1159), Expect = e-123, Method: Compositional matrix adjust.
Identities = 233/535 (43%), Positives = 338/535 (63%), Gaps = 2/535 (0%)
Query: 157 FDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGME-KSRTRPNVFVYNVLISGFC 215
F+ +V RPD FT+ KAVQA V GDL A + M PN F YNV+I+G
Sbjct: 140 FELLVAARARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLW 199
Query: 216 KEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLV 275
K DA KLFDEM ++ +VP +TYNT++DG+ K G+ E L +M R ++ +++
Sbjct: 200 KAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVI 259
Query: 276 MFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEEL 335
+N LL G C+A RM E +V EM + PDGFTYS+LFDG+S+ GD + +++L+EE
Sbjct: 260 TYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEES 319
Query: 336 SGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDL 395
+G +I +YTCSILLN LCK+GK+ AEE++ + +GL+ V++NT+++GYC+ GDL
Sbjct: 320 VKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDL 379
Query: 396 NRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTL 455
A QQM++ + P+ IT+N LI+ ++ + +A + V M + GV+P+V+T NTL
Sbjct: 380 EGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTL 439
Query: 456 IDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGV 515
ID YGR G +KCF IL +M+ G+KPNVVSYGS++N CK+ K+LEA +L DM + V
Sbjct: 440 IDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDV 499
Query: 516 LPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAED 575
LP AQ+YN +ID G AF ++M + P++VT+N LI GLCK+ ++ EAE+
Sbjct: 500 LPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEE 559
Query: 576 MLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCI 635
+L + + GL PDVI+YN+LIS ++ + LEL + M K GIKPS RTY L S
Sbjct: 560 LLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLG 619
Query: 636 REGIV-AVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGI 689
G V +E L+ +ML ++VP +YN ++ YA+ G+ K L EM D+GI
Sbjct: 620 GAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVEALRKEMSDKGI 674
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor] gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1150), Expect = e-122, Method: Compositional matrix adjust.
Identities = 229/570 (40%), Positives = 349/570 (61%), Gaps = 9/570 (1%)
Query: 133 SLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIF 192
SL S N+LLE L+ ++ F +V G RPD F + KAVQA V GDL A +
Sbjct: 122 SLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAML 181
Query: 193 DGMEKSRTRP--NVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYC 250
M +S P + F YNV+I+G + K DA K+FDEM R + P ++TYNT++DG+
Sbjct: 182 RRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHV 241
Query: 251 KVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGF 310
K G+ E LR++M +D + ++V +N LL G C+A RM+E +++ EM ++ PDGF
Sbjct: 242 KGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGF 301
Query: 311 TYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKE 370
TYS+LFDG ++ GD +++L+ E +G I +YTCSILLN LCK+GKV AE+++
Sbjct: 302 TYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEML 361
Query: 371 IENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEM 430
+ GLVP ++NT+++GYC+ DL A +QM++ + P+ IT+N LI+ C++ +
Sbjct: 362 VHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMI 421
Query: 431 DKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSL 490
+AE+ V M + GV P+V+T NTLID YGR G +KCF +L +M++ G+K NV+S+GS+
Sbjct: 422 TEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSV 481
Query: 491 INWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREM 550
+ CK+ K+ EA +L DM ++ V+PNAQ+YN +ID G + AF ++M +
Sbjct: 482 VKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGV 541
Query: 551 GPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLE 610
++ T+N L+ GLCK ++ EAE+++ +T+ GL PDV++YN++IS + G + + LE
Sbjct: 542 SASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALE 601
Query: 611 LYENMKKLGIKPSLRTYHPLLSGCIREGIVA-VEKLFNEMLQINLVPDLLVYNALIHCYA 669
L + M K I+P+LRTYHPLLS G V +E L+ M+ N+ P +Y C
Sbjct: 602 LLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSSSIYGT--RCEN 659
Query: 670 EHGDVQKALVLHSEMVDQGIRPDKMTYNSL 699
E K L EM ++GI D +L
Sbjct: 660 E----SKVASLKKEMSEKGIAFDDTERTNL 685
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 808 | ||||||
| TAIR|locus:2177028 | 816 | AT5G12100 [Arabidopsis thalian | 0.938 | 0.928 | 0.521 | 5.3e-214 | |
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.773 | 0.689 | 0.297 | 1.6e-79 | |
| TAIR|locus:2082727 | 851 | AT3G54980 [Arabidopsis thalian | 0.787 | 0.747 | 0.289 | 2.5e-74 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.707 | 0.625 | 0.296 | 5.9e-73 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.680 | 0.867 | 0.295 | 6.1e-71 | |
| TAIR|locus:2098495 | 880 | AT3G07290 "AT3G07290" [Arabido | 0.761 | 0.698 | 0.285 | 6.8e-71 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.846 | 0.896 | 0.265 | 1.3e-70 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.678 | 0.892 | 0.291 | 1.8e-69 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.829 | 0.896 | 0.274 | 3e-69 | |
| TAIR|locus:2174008 | 974 | AT5G61990 "AT5G61990" [Arabido | 0.830 | 0.688 | 0.261 | 3.8e-69 |
| TAIR|locus:2177028 AT5G12100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2068 (733.0 bits), Expect = 5.3e-214, P = 5.3e-214
Identities = 399/765 (52%), Positives = 550/765 (71%)
Query: 47 NEQVRKIRILFQNNRTEAAQSLIKSIVLSNASPFTSPHELFSLFSVSSPYYKPTFTNILL 106
+E++R +R+L Q NR E A+ ++ S++ S+++PF SP ELFS FS+SSP K F+ +LL
Sbjct: 56 DEKLRNLRVLLQQNRIETARGVLSSLLRSDSTPFASPKELFSAFSLSSPSLKHDFSYLLL 115
Query: 107 SIL-SSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGF 165
S+L + +K+ SEA L+ + + +G S DS+ +LL+ LV+ Q+ +++F I+ F
Sbjct: 116 SVLLNESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDF 175
Query: 166 RPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEK 225
RP KF YGKA+QAAVK+ D+ + E+F+ M+ R P+VF+YNVLI G CK K++ DAE+
Sbjct: 176 RPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQ 235
Query: 226 LFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFC 285
LFDEM R+L+P+ +TYNTL+DGYCK G EK +RERMK D +E SL+ FN+LL G
Sbjct: 236 LFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLF 295
Query: 286 KAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSY 345
KA +E+A++V KEM+ GF PD FT+S+LFDGYS E + +YE G ++N+Y
Sbjct: 296 KAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAY 355
Query: 346 TCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQM 405
TCSILLNALCKEGK+E AEEI+G+E+ GLVP+EV++NT++ GYCR GDL A + I+ M
Sbjct: 356 TCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAM 415
Query: 406 ENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHF 465
E G+ P+ + +N LI +FCELGEM+ AE+ V +M KGVSP+V+T N LI GYGR F
Sbjct: 416 EKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEF 475
Query: 466 DKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNML 525
DKCF IL+EME++G PNVVSYG+LIN LCK KLLEA+IV +DME+RGV P +IYNML
Sbjct: 476 DKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNML 535
Query: 526 IDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGL 585
IDG C+ G+I+DAF+F EM+K+ + LVT+N LI+GL G++ EAED+L +I+ GL
Sbjct: 536 IDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGL 595
Query: 586 NPDVITYNXXXXXXXXXXXXQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKL 645
PDV TYN Q+C+ LYE MK+ GIKP+L+TYH L+S C +EGI E+L
Sbjct: 596 KPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEGIELTERL 655
Query: 646 FNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLR 705
F EM +L PDLLVYN ++HCYA HGD++KA L +M+++ I DK TYNSLI G L+
Sbjct: 656 FGEM---SLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLK 712
Query: 706 EGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCI 765
GKL EV+ L+++M + + P+ADTYNI+VKG+C +KD+ AY+WYREM E GF+ CI
Sbjct: 713 VGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLDVCI 772
Query: 766 YNELTNGLKQEGKLKEAQILCSEIS--IVGKDAWTNEDQSAVAKM 808
NEL +GLK+E + KEA+I+ SE++ ++G D +ED SA K+
Sbjct: 773 GNELVSGLKEEWRSKEAEIVISEMNGRMLG-DVTVDEDLSATEKL 816
|
|
| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
Identities = 188/632 (29%), Positives = 319/632 (50%)
Query: 103 NILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVC 162
N+L+ L + EA+ + + + + L+ L + +++ L++ DE++C
Sbjct: 266 NVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLC 325
Query: 163 MGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRD 222
+ F P + V+ K G ++ A + + PN+FVYN LI CK +K +
Sbjct: 326 LRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHE 385
Query: 223 AEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLG 282
AE LFD M + L P VTY+ L+D +C+ G+ + + M +++S+ +NSL+
Sbjct: 386 AELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLIN 445
Query: 283 GFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRI 342
G CK + A+ EM +P TY+ L GY G + LY E++G+G
Sbjct: 446 GHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAP 505
Query: 343 NSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAI 402
+ YT + LL+ L + G + A ++ + E + P+ V +N ++ GYC GD+++A +
Sbjct: 506 SIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFL 565
Query: 403 QQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRM 462
++M G+ P+ ++ LI C G+ +A+ +V + + N L+ G+ R
Sbjct: 566 KEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCRE 625
Query: 463 GHFDKCFQILEEMENSGMKPNVVSYGSLINWLCK--DCKLLEAEIVLKDMENRGVLPNAQ 520
G ++ + +EM G+ ++V YG LI+ K D KL +LK+M +RG+ P+
Sbjct: 626 GKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFG--LLKEMHDRGLKPDDV 683
Query: 521 IYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQI 580
IY +ID G K+AF +D M+ P VT+ A+INGLCK G V EAE + ++
Sbjct: 684 IYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKM 743
Query: 581 TSSGLNPDVITYN-XXXXXXXXXXXXQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG- 638
P+ +TY QK +EL+ + K G+ + TY+ L+ G R+G
Sbjct: 744 QPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILK-GLLANTATYNMLIRGFCRQGR 802
Query: 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNS 698
I +L M+ + PD + Y +I+ DV+KA+ L + M ++GIRPD++ YN+
Sbjct: 803 IEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNT 862
Query: 699 LIFGHLREGKLSEVKELVNDMKVKGLIPKADT 730
LI G G++ + EL N+M +GLIP T
Sbjct: 863 LIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894
|
|
| TAIR|locus:2082727 AT3G54980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
Identities = 188/650 (28%), Positives = 315/650 (48%)
Query: 95 PYYKPTFTNILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDR-- 152
P++ P + N LS L +EA +LY+ A G +D NV + L+R + +
Sbjct: 196 PFF-P-YVNRTLSALVQRNSLTEAKELYSRMVAIG----VDGDNVTTQLLMRASLREEKP 249
Query: 153 --ALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGM-EKSRTRPNVFVYNV 209
AL++ + G PD Y AVQA K DL A + M EK P+ Y
Sbjct: 250 AEALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTS 309
Query: 210 LISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDK 269
+I K+ + DA +L DEM + V +L+ G+CK + L ++M+++
Sbjct: 310 VILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEG 369
Query: 270 VEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVM 329
+ V F+ L+ F K ME+A K+ME G P F + G+ K E +
Sbjct: 370 PSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEAL 429
Query: 330 ALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGY 389
L++E G N + C+ +L+ LCK+GK + A E++ K G+ P+ V +N ++ G+
Sbjct: 430 KLFDESFETGLA-NVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGH 488
Query: 390 CRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNV 449
CR +++ A + + GL PN T++ LID + A E V M + N
Sbjct: 489 CRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNG 548
Query: 450 KTNNTLIDGYGRMGHFDKCFQILEEM-ENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLK 508
T+I+G ++G K ++L M E + + +SY S+I+ K+ ++ A +
Sbjct: 549 VVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYE 608
Query: 509 DMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKG 568
+M G+ PN Y L++G C R+ A + DEM + + + + ALI+G CK+
Sbjct: 609 EMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRS 668
Query: 569 RVMEAEDMLPQITSSGLNPDVITYNXXXXXXXXXXXXQKCLELYENMKKLGIKPSLRTYH 628
+ A + ++ GLNP YN L+LY+ M K G++ L TY
Sbjct: 669 NMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYT 728
Query: 629 PLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQ 687
L+ G +++G ++ +L+ EM + LVPD ++Y +++ ++ G K + + EM
Sbjct: 729 TLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKN 788
Query: 688 GIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKG 737
+ P+ + YN++I GH REG L E L ++M KG++P T++ILV G
Sbjct: 789 NVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSG 838
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 173/584 (29%), Positives = 301/584 (51%)
Query: 133 SLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIF 192
S DS+ L L C + ++ DE + ++ Y + + + G + +++
Sbjct: 152 SCDSVGDALYVLDLCRKMNK-----DERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVY 206
Query: 193 DGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKV 252
M + + PN++ YN +++G+CK + +A + ++ + L P TY +L+ GYC+
Sbjct: 207 MEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQR 266
Query: 253 GEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTY 312
+ + + M + V + L+ G C A+R++EA + +M+ P TY
Sbjct: 267 KDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTY 326
Query: 313 SMLFDGYSKCGDGEGVMAL--YEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKE 370
++L S CG AL +E+ G + N +T ++L+++LC + K E A E++G+
Sbjct: 327 TVLIK--SLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQM 384
Query: 371 IENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEM 430
+E GL+P+ + +N +++GYC+ G + A+ ++ ME+ L+PN T+N LI +C+ +
Sbjct: 385 LEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNV 443
Query: 431 DKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSL 490
KA + +MLE+ V P+V T N+LIDG R G+FD +++L M + G+ P+ +Y S+
Sbjct: 444 HKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSM 503
Query: 491 INWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREM 550
I+ LCK ++ EA + +E +GV PN +Y LIDG C G++ +A ++M+ +
Sbjct: 504 IDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNC 563
Query: 551 GPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNXXXXXXXXXXXXQKCLE 610
P +TFNALI+GLC G++ EA + ++ GL P V T
Sbjct: 564 LPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYS 623
Query: 611 LYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYA 669
++ M G KP TY + REG ++ E + +M + + PDL Y++LI Y
Sbjct: 624 RFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYG 683
Query: 670 EHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVK 713
+ G A + M D G P + T+ SLI HL E K + K
Sbjct: 684 DLGQTNFAFDVLKRMRDTGCEPSQHTFLSLI-KHLLEMKYGKQK 726
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
Identities = 163/551 (29%), Positives = 283/551 (51%)
Query: 185 LKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNT 244
L A +F GM KSR P++ +N L+S K KK L ++M + ++V TYN
Sbjct: 66 LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNI 125
Query: 245 LVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHG 304
L++ +C+ + AL +M + E S+V +SLL G+C KR+ +A ++ +M G
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185
Query: 305 FDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAE 364
+ PD T++ L G +AL + + RG + N T +++N LCK G ++A
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 245
Query: 365 EIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKF 424
++ K + D V+FNTI+ C+ ++ A+ ++ME G+ PN +T+++LI
Sbjct: 246 NLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 305
Query: 425 CELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNV 484
C G A + + M+EK ++PN+ T N LID + + G F + ++ ++M + P++
Sbjct: 306 CSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDI 365
Query: 485 VSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDE 544
+Y SL+N C +L +A+ + + M ++ P+ YN LI G C R++D + F E
Sbjct: 366 FTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFRE 425
Query: 545 MVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNXXXXXXXXXXX 604
M R + VT+ LI GL G A+ + Q+ S G+ PD++TY+
Sbjct: 426 MSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK 485
Query: 605 XQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVE-KLFNEMLQINLVPDLLVYNA 663
+K LE+++ M+K IK + Y ++ G + G V LF + + P+++ YN
Sbjct: 486 LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNT 545
Query: 664 LIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKG 723
+I +Q+A L +M + G P+ TYN+LI HLR+G + EL+ +M+
Sbjct: 546 MISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCR 605
Query: 724 LIPKADTYNIL 734
+ A T ++
Sbjct: 606 FVGDASTIGLV 616
|
|
| TAIR|locus:2098495 AT3G07290 "AT3G07290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 637 (229.3 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
Identities = 182/637 (28%), Positives = 304/637 (47%)
Query: 85 ELFSLFSVSSPYYKPTFTNILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECL 144
EL +F Y P ++++L+S L+ L A Y +ADG + + ++ L
Sbjct: 149 ELREVFGFRLNY--PCYSSLLMS-LAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNAL 205
Query: 145 VRCNQYDRALDLF-DEIVCMGFRPDKFTYGKAVQAAVKIG-DLKRACEIFDGMEKSRT-R 201
+ N Y A ++F +I+ +GF D G ++ G +L+ A ++FD M K T
Sbjct: 206 CK-NGYTEAAEMFMSKILKIGFVLDSHI-GTSLLLGFCRGLNLRDALKVFDVMSKEVTCA 263
Query: 202 PNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSAL 261
PN Y++LI G C+ ++ +A L D+M ++ P+ TY L+ C G +K L
Sbjct: 264 PNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNL 323
Query: 262 RERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSK 321
+ M + ++ + L+ G C+ ++EEA VC++M P TY+ L +GY
Sbjct: 324 FDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGY-- 381
Query: 322 CGDGEGVMA--LYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDE 379
C DG V A L + R + N T + L+ LC+ GK A ++ + ++NGL PD
Sbjct: 382 CKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDI 441
Query: 380 VMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKR 439
V +N ++ G CR G +N A + M + P+C+TF +I+ FC+ G+ D A ++
Sbjct: 442 VSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGL 501
Query: 440 MLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCK 499
ML KG+S + T TLIDG ++G ILE + + S +++ L K CK
Sbjct: 502 MLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCK 561
Query: 500 LLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNA 559
+ E +L + G++P+ Y L+DG G I +F+ + M P + +
Sbjct: 562 VKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTI 621
Query: 560 LINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNXXXXXXXXXXXXQKCLELYENMKKLG 619
+INGLC+ GRV EAE +L + SG++P+ +TY + LE M + G
Sbjct: 622 IINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERG 681
Query: 620 IKPSLRTYHPLLSGCI--REGIV-AVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQK 676
+ + R Y LL G + ++GI + E +++ P+ + N LI + G
Sbjct: 682 YELNDRIYSSLLQGFVLSQKGIDNSEESTVSDIALRETDPECI--NELISVVEQLGGCIS 739
Query: 677 ALVLH--SEMVDQGIRPDKMTYNSLIFGHLREGKLSE 711
L + + + +G R D+ N L+ L G E
Sbjct: 740 GLCIFLVTRLCKEG-RTDES--NDLVQNVLERGVFLE 773
|
|
| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 183/688 (26%), Positives = 327/688 (47%)
Query: 99 PTFTNILLSILSSAKLPSEALQLYASTKAD-GTRLSLDSINVLLECLVRCNQYDRALD-L 156
P + +++ K P +AL+++ S + + G + +L + ++E L +++ + L
Sbjct: 4 PLLPKHVTAVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVL 63
Query: 157 FDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCK 216
D +G + Y A++ + G ++ A +F+ M+ P VF YN ++S
Sbjct: 64 VDMRENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVD 123
Query: 217 EKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVM 276
A K++ M R + P ++ + +CK L M E+++V
Sbjct: 124 SGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVA 183
Query: 277 FNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELS 336
+ +++GGF + E + +M A G T++ L K GD + L +++
Sbjct: 184 YCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVI 243
Query: 337 GRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLN 396
RG N +T ++ + LC+ G+++ A +VG IE G PD + +N ++ G C+
Sbjct: 244 KRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQ 303
Query: 397 RAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLI 456
A + + +M N GL P+ T+NTLI +C+ G + AE V + G P+ T +LI
Sbjct: 304 EAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLI 363
Query: 457 DGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVL 516
DG G ++ + E G+KPNV+ Y +LI L +LEA + +M +G++
Sbjct: 364 DGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLI 423
Query: 517 PNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDM 576
P Q +N+L++G C MG + DA M+ + P + TFN LI+G + ++ A ++
Sbjct: 424 PEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEI 483
Query: 577 LPQITSSGLNPDVITYNXXXXXXXXXXXXQKCLELYENMKKLGIKPSLRTYHPLLSG-CI 635
L + +G++PDV TYN + +E Y+ M + G P+L T++ LL C
Sbjct: 484 LDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCR 543
Query: 636 REGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQ-GIRPDKM 694
+ L EM ++ PD + + LI + ++GD+ A L +M + +
Sbjct: 544 YRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTP 603
Query: 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREM 754
TYN +I + ++ ++L +M + L P TY ++V G+C + Y + EM
Sbjct: 604 TYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEM 663
Query: 755 FENGFIPSFCIYNELTNGLKQEGKLKEA 782
ENGFIPS + N L E ++ EA
Sbjct: 664 MENGFIPSLTTLGRVINCLCVEDRVYEA 691
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
Identities = 161/553 (29%), Positives = 286/553 (51%)
Query: 185 LKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRV-TYN 243
L A ++F M KSR P++ ++ L+S K KK D F E + V + TYN
Sbjct: 46 LDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKF-DLVISFGEKMEILGVSHNLYTYN 104
Query: 244 TLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAH 303
+++ C+ + A+ +M + S+V NSLL GFC R+ EA ++ +M
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 164
Query: 304 GFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIA 363
G+ PD T++ L G + +AL E + +G + + T ++N LCK G+ ++A
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 224
Query: 364 EEIVGKEIENGLVP-DEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLID 422
++ K +E G + D V+++T++ C+ ++ A+ +M+N G+ P+ T+++LI
Sbjct: 225 LNLLNK-MEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLIS 283
Query: 423 KFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKP 482
C G A + MLE+ ++PNV T N+LID + + G + ++ +EM + P
Sbjct: 284 CLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP 343
Query: 483 NVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFF 542
N+V+Y SLIN C +L EA+ + M ++ LP+ YN LI+G C ++ D + F
Sbjct: 344 NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELF 403
Query: 543 DEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNXXXXXXXXX 602
+M +R + VT+ LI+G + A+ + Q+ S G++P+++TYN
Sbjct: 404 RDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKN 463
Query: 603 XXXQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVE-KLFNEMLQINLVPDLLVY 661
+K + ++E ++K ++P + TY+ + G + G V LF + + PD++ Y
Sbjct: 464 GKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAY 523
Query: 662 NALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKV 721
N +I + + G ++A L +M + G PD TYN+LI HLR+G + EL+ +M+
Sbjct: 524 NTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRS 583
Query: 722 KGLIPKADTYNIL 734
A TY ++
Sbjct: 584 CRFAGDASTYGLV 596
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| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 193/703 (27%), Positives = 346/703 (49%)
Query: 56 LFQNNRTEAAQSLI-KS-----IVLSNASPFTSPHELFSL------FSVSSPYYKPTFTN 103
L N EAA +L+ KS ++L + + +PH+ F+L + + +
Sbjct: 42 LSANFTPEAASNLLLKSQNDQALILKFLN-WANPHQFFTLRCKCITLHILTKFKLYKTAQ 100
Query: 104 ILLSILSSAKLPSEALQLYASTKADGTRL--SLDSI-NVLLECLVRCNQYDRALDLFDEI 160
IL +++ L E L + + L S S+ +++++ R + D+AL +
Sbjct: 101 ILAEDVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLA 160
Query: 161 VCMGFRPDKFTYGKAVQAAVKIG-DLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKK 219
GF P +Y + A ++ ++ A +F M +S+ PNVF YN+LI GFC
Sbjct: 161 QAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGN 220
Query: 220 IRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNS 279
I A LFD+M + +P VTYNTL+DGYCK+ + + L M +E +L+ +N
Sbjct: 221 IDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNV 280
Query: 280 LLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRG 339
++ G C+ RM+E V EM G+ D TY+ L GY K G+ + ++ E+ G
Sbjct: 281 VINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHG 340
Query: 340 FRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAM 399
+ T + L++++CK G + A E + + GL P+E + T+V G+ + G +N A
Sbjct: 341 LTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAY 400
Query: 400 LAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGY 459
+++M ++G +P+ +T+N LI+ C G+M+ A ++ M EKG+SP+V + +T++ G+
Sbjct: 401 RVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGF 460
Query: 460 GRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNA 519
R D+ ++ EM G+KP+ ++Y SLI C+ + EA + ++M G+ P+
Sbjct: 461 CRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDE 520
Query: 520 QIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQ 579
Y LI+ C G ++ A + +EMV++ + P +VT++ LINGL K+ R EA+ +L +
Sbjct: 521 FTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLK 580
Query: 580 ITSSGLNPDVITY-----NXXXXXXXXXXXXQK--CL--------ELYENMKKLGIKPSL 624
+ P +TY N K C+ +++E+M KP
Sbjct: 581 LFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDG 640
Query: 625 RTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSE 683
Y+ ++ G R G I L+ EM++ + + AL+ + G V + +
Sbjct: 641 TAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVH 700
Query: 684 MVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP 726
++ + L+ + REG + V +++ +M G +P
Sbjct: 701 VLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLP 743
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| TAIR|locus:2174008 AT5G61990 "AT5G61990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
Identities = 179/685 (26%), Positives = 326/685 (47%)
Query: 98 KPTFTNILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLF 157
K T+ ++L+ L K +A L + G L + ++L++ L++ D A L
Sbjct: 277 KYTY-DVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLV 335
Query: 158 DEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKE 217
E+V G + Y + K G +++A +FDGM S P Y LI G+C+E
Sbjct: 336 HEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCRE 395
Query: 218 KKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMF 277
K +R +L EM +R +V + TY T+V G C G+ + + + M ++V++
Sbjct: 396 KNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIY 455
Query: 278 NSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSG 337
+L+ F + R +A V KEM+ G PD F Y+ L G SK + + E+
Sbjct: 456 TTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515
Query: 338 RGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNR 397
G + N++T ++ + + A++ V + E G++P++V+ +++ YC+ G +
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIE 575
Query: 398 AMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLID 457
A A + M + G+ + T+ L++ + ++D AEE + M KG++P+V + LI+
Sbjct: 576 ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLIN 635
Query: 458 GYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLP 517
G+ ++G+ K I +EM G+ PNV+ Y L+ C+ ++ +A+ +L +M +G+ P
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695
Query: 518 NAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDML 577
NA Y +IDG C G + +AF+ FDEM + + P + L++G C+ V A +
Sbjct: 696 NAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF 755
Query: 578 PQITSSGLNPDVITYNXXXXXXXXXXXXQKCLELYENMK-----KLGIKPSLRTYHPLLS 632
G +N + E+ + + G KP+ TY+ ++
Sbjct: 756 GT-NKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG-KPNDVTYNIMID 813
Query: 633 GCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP 691
+EG + A ++LF++M NL+P ++ Y +L++ Y + G + + E + GI P
Sbjct: 814 YLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEP 873
Query: 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA-----DTYNILVKGYCNLKDFGG 746
D + Y+ +I L+EG ++ LV+ M K + T L+ G+ + +
Sbjct: 874 DHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEV 933
Query: 747 AYIWYREMFENGFIPSFCIYNELTN 771
A M +IP EL N
Sbjct: 934 AEKVMENMVRLQYIPDSATVIELIN 958
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FMQ1 | PP376_ARATH | No assigned EC number | 0.5181 | 0.9715 | 0.9620 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00021686001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (819 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 808 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-34 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-33 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-32 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-32 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-26 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-25 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-22 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-20 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-19 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 7e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 1e-34
Identities = 108/437 (24%), Positives = 209/437 (47%), Gaps = 17/437 (3%)
Query: 206 VYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERM 265
YN L+ ++ +I+D L ++M +R L+ Y+ CK K A++E
Sbjct: 376 AYNRLL----RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACK-----KQRAVKEAF 426
Query: 266 KRDKV--EVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCG 323
+ K+ +L FN L+ ++ ++ A V + ++ G D Y+ L +K G
Sbjct: 427 RFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG 486
Query: 324 DGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFN 383
+ + ++ E+ G N +T L++ + G+V A G + PD V+FN
Sbjct: 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546
Query: 384 TIVSGYCRTGDLNRA--MLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRML 441
++S ++G ++RA +LA + E H + P+ IT L+ G++D+A+E + +
Sbjct: 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606
Query: 442 EKGV--SPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCK 499
E + +P V T ++ + G +D I ++M+ G+KP+ V + +L++
Sbjct: 607 EYNIKGTPEVYT--IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664
Query: 500 LLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNA 559
L +A +L+D +G+ Y+ L+ K A + ++++ ++ PT+ T NA
Sbjct: 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA 724
Query: 560 LINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLG 619
LI LC+ ++ +A ++L ++ GL P+ ITY+ L+ + L+L K+ G
Sbjct: 725 LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784
Query: 620 IKPSLRTYHPLLSGCIR 636
IKP+L + C+R
Sbjct: 785 IKPNLVMCRCITGLCLR 801
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 4e-33
Identities = 106/467 (22%), Positives = 202/467 (43%), Gaps = 55/467 (11%)
Query: 242 YNTLV-DGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKR-MEEAKSVCKE 299
YN L+ DG K + + L + KR +++ + CK +R ++EA K
Sbjct: 377 YNRLLRDGRIK----DCIDLLEDMEKRGLLDMDKIYHAKFFKA-CKKQRAVKEAFRFAKL 431
Query: 300 MEAHGFDPDGFTYSMLFDGYSKCGDGEG---VMALYEELSGRGFRINSYTCSILLNALCK 356
+ +P T++ML + D +G V+ L +E G + + + L++ K
Sbjct: 432 IR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQE---AGLKADCKLYTTLISTCAK 484
Query: 357 EGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCIT 416
GKV+ E+ +M N G+ N T
Sbjct: 485 SGKVDAMFEV-----------------------------------FHEMVNAGVEANVHT 509
Query: 417 FNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEM- 475
F LID G++ KA M K V P+ N LI G+ G D+ F +L EM
Sbjct: 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569
Query: 476 -ENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGR 534
E + P+ ++ G+L+ ++ A+ V + + + ++Y + ++ G
Sbjct: 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629
Query: 535 IKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNS 594
A +D+M K+ + P V F+AL++ G + +A ++L G+ ++Y+S
Sbjct: 630 WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689
Query: 595 LISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSG-CIREGIVAVEKLFNEMLQIN 653
L+ S+ + +K LELYE++K + ++P++ T + L++ C + ++ +EM ++
Sbjct: 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749
Query: 654 LVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLI 700
L P+ + Y+ L+ D L L S+ + GI+P+ + +
Sbjct: 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796
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Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 1e-32
Identities = 146/638 (22%), Positives = 268/638 (42%), Gaps = 81/638 (12%)
Query: 136 SINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGM 195
S NVL+ + +D AL L+ ++ G RPD +T+ ++ I DL R E+ +
Sbjct: 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213
Query: 196 EKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEF 255
+ +V V N LI+ + K + A +FD M +R +++N ++ GY + GE
Sbjct: 214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD----CISWNAMISGYFENGEC 269
Query: 256 EKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSML 315
+ L M+ V+ L+ S++ A + + + +EM HG+
Sbjct: 270 LEGLELFFTMRELSVDPDLMTITSVI----SACELLGDERLGREM--HGY---------- 313
Query: 316 FDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGL 375
+ GF ++ C+ L+ G AE++ + +E
Sbjct: 314 -------------------VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR-ME--- 350
Query: 376 VPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEE 435
D V + ++SGY + G ++A+ ME ++P+ IT +++ LG++D +
Sbjct: 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410
Query: 436 WVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLC 495
+ KG+ V N LI+ Y + DK ++ + +V+S+ S+I L
Sbjct: 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLR 466
Query: 496 KDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLV 555
+ + EA I + M + PN+ + +G + + +++ +G
Sbjct: 467 LNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525
Query: 556 TFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENM 615
NAL++ + GR+ A Q S DV+++N L++GY + G +EL+ M
Sbjct: 526 LPNALLDLYVRCGRMNYA---WNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580
Query: 616 KKLGIKPSLRTYHPLLSGCIREGIVAVE-KLFNEM-LQINLVPDLLVYNALIHCYAEHGD 673
+ G+ P T+ LL C R G+V + F+ M + ++ P+L Y ++ G
Sbjct: 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640
Query: 674 VQKALVLHSEMVDQGIRPDKMTYNSL-----IFGHLREGKLSEVKELVNDMKVKGLIPKA 728
+ +A ++M I PD + +L I H+ G+L+ D P +
Sbjct: 641 LTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELD-------PNS 690
Query: 729 DTYNILVKGYCNLKDFGGAYIW------YREMFENGFI 760
Y IL+ CNL + A W + M ENG
Sbjct: 691 VGYYILL---CNL--YADAGKWDEVARVRKTMRENGLT 723
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 7e-32
Identities = 82/327 (25%), Positives = 148/327 (45%), Gaps = 3/327 (0%)
Query: 465 FDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNM 524
D ++L ++ +G+K + Y +LI+ K K+ V +M N GV N +
Sbjct: 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA 512
Query: 525 LIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSG 584
LIDG G++ AF + M + + P V FNALI+ + G V A D+L ++ +
Sbjct: 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET 572
Query: 585 --LNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAV 642
++PD IT +L+ ++ G + E+Y+ + + IK + Y ++ C ++G
Sbjct: 573 HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF 632
Query: 643 E-KLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIF 701
++++M + + PD + ++AL+ GD+ KA + + QGI+ ++Y+SL+
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692
Query: 702 GHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP 761
+ EL D+K L P T N L+ C A EM G P
Sbjct: 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752
Query: 762 SFCIYNELTNGLKQEGKLKEAQILCSE 788
+ Y+ L +++ L S+
Sbjct: 753 NTITYSILLVASERKDDADVGLDLLSQ 779
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 7e-26
Identities = 79/349 (22%), Positives = 147/349 (42%), Gaps = 3/349 (0%)
Query: 184 DLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYN 243
D+ A + ++++ + + +Y LIS K K+ ++F EM + T+
Sbjct: 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511
Query: 244 TLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEM--E 301
L+DG + G+ K M+ V+ V+FN+L+ ++ ++ A V EM E
Sbjct: 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE 571
Query: 302 AHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVE 361
H DPD T L + G + +Y+ + + +I +N+ ++G +
Sbjct: 572 THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD 631
Query: 362 IAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLI 421
A I + G+ PDEV F+ +V GDL++A +Q G+ +++++L+
Sbjct: 632 FALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691
Query: 422 DKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMK 481
KA E + + + P V T N LI K ++L EM+ G+
Sbjct: 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751
Query: 482 PNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSC 530
PN ++Y L+ + +L + G+ PN + + G C
Sbjct: 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 5e-25
Identities = 86/314 (27%), Positives = 139/314 (44%), Gaps = 14/314 (4%)
Query: 477 NSGMKP--NVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSC-TMG 533
N G+ Y N L +D ++ + +L+DME RG+L +IY+ +C
Sbjct: 361 NGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR 420
Query: 534 RIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYN 593
+K+AF+F K PTL TFN L++ + A +L + +GL D Y
Sbjct: 421 AVKEAFRF----AKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYT 476
Query: 594 SLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNE---ML 650
+LIS + G E++ M G++ ++ T+ L+ GC R G VA K F M
Sbjct: 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA--KAFGAYGIMR 534
Query: 651 QINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMV--DQGIRPDKMTYNSLIFGHLREGK 708
N+ PD +V+NALI + G V +A + +EM I PD +T +L+ G+
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594
Query: 709 LSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNE 768
+ KE+ + + + Y I V D+ A Y +M + G P ++
Sbjct: 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 769 LTNGLKQEGKLKEA 782
L + G L +A
Sbjct: 655 LVDVAGHAGDLDKA 668
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 9e-22
Identities = 134/597 (22%), Positives = 223/597 (37%), Gaps = 142/597 (23%)
Query: 74 LSNASPFTSPHELFSLFSVSSPYYKPTFTNILLSILSSA-----KLPSEALQLYASTKAD 128
LSN SP FS+ K F++I S + +L E +++ S D
Sbjct: 20 LSNPRLLHSPR----KFSLRGRRTKTPFSSISCSSVEQGLKPRPRLKPEPIRIEVSESKD 75
Query: 129 G------TRLSLDSINVLLECLVRCNQYDRALDLFD------------------------ 158
R S S+ +E LV C ++ AL+LF+
Sbjct: 76 ARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIA 135
Query: 159 --EIVCM----------GFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFV 206
I C+ GF PD++ + + VK G L A +FD M + N+
Sbjct: 136 LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLAS 191
Query: 207 YNVLISGFCKEKKIRDAEKLFDEMCQ--------------------------RKL----V 236
+ +I G R+A LF EM + ++L +
Sbjct: 192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251
Query: 237 PTRVTYNT-----LVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRME 291
T V +T L+D Y K G+ E + + M E + V +NS+L G+ E
Sbjct: 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSE 307
Query: 292 EAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILL 351
EA + EM G D FT+ SI++
Sbjct: 308 EALCLYYEMRDSGVSIDQFTF-----------------------------------SIMI 332
Query: 352 NALCKEGKVEIAEEIVGKEIENGLVPDEVMFNT-IVSGYCRTGDLNRAMLAIQQMENHGL 410
+ +E A++ I G P +++ NT +V Y + G + A +M
Sbjct: 333 RIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-- 389
Query: 411 APNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQ 470
N I++N LI + G KA E +RM+ +GV+PN T ++ G ++ ++
Sbjct: 390 --NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447
Query: 471 ILEEM-ENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGS 529
I + M EN +KP + Y +I L ++ L EA +++ P ++ L+ +
Sbjct: 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLT-A 503
Query: 530 CTMGRIKDAFKFFDEMVKREMGP-TLVTFNALINGLCKKGRVMEAEDMLPQITSSGL 585
C + + + + E + MGP L + L+N GR EA ++ + GL
Sbjct: 504 CRIHKNLELGRLAAEKL-YGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 2e-20
Identities = 116/506 (22%), Positives = 204/506 (40%), Gaps = 63/506 (12%)
Query: 271 EVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMA 330
E L +N L+GG+ KA +EA + M G PD +T+ + CG G+
Sbjct: 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL---RTCG---GIPD 202
Query: 331 LYEELSGR---------GFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVM 381
L GR GF ++ + L+ K G V A + + D +
Sbjct: 203 L---ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCIS 255
Query: 382 FNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRML 441
+N ++SGY G+ + M + P+ +T ++I LG+ E ++
Sbjct: 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV 315
Query: 442 EKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLL 501
+ G + +V N+LI Y +G + + ++ ME + VS+ ++I+ K+
Sbjct: 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPD 371
Query: 502 EAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALI 561
+A ME V P+ ++ +G + K + ++ + +V NALI
Sbjct: 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431
Query: 562 NGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIK 621
K + +A ++ I DVI++ S+I+G + L + M L +K
Sbjct: 432 EMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLK 486
Query: 622 PSLRTYHPLLSGCIREGIVAVEK----------------LFNEML--------------Q 651
P+ T LS C R G + K L N +L Q
Sbjct: 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ 546
Query: 652 INL-VPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLS 710
N D++ +N L+ Y HG A+ L + MV+ G+ PD++T+ SL+ R G ++
Sbjct: 547 FNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606
Query: 711 EVKELVNDMKVK-GLIPKADTYNILV 735
+ E + M+ K + P Y +V
Sbjct: 607 QGLEYFHSMEEKYSITPNLKHYACVV 632
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 1e-19
Identities = 101/457 (22%), Positives = 210/457 (45%), Gaps = 32/457 (7%)
Query: 277 FNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELS 336
+++L+ K + K+V +E+ GF+PD + + + + KCG L++E+
Sbjct: 126 YDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP 185
Query: 337 GRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIV-----SGYCR 391
R N + ++ L G A + + E+G + F ++ G R
Sbjct: 186 ER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241
Query: 392 TG-DLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVK 450
G L+ +L + + ++ C LID + + G+++ A M EK V
Sbjct: 242 AGQQLHCCVLKTGVVGDTFVS--C----ALIDMYSKCGDIEDARCVFDGMPEKTT---VA 292
Query: 451 TNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDM 510
N+ ++ GY G+ ++ + EM +SG+ + ++ +I + L A+ +
Sbjct: 293 WNS-MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351
Query: 511 ENRGVLPNAQIYNM-LIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGR 569
G P + N L+D GR++DA FD M ++ L+++NALI G GR
Sbjct: 352 IRTG-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGR 406
Query: 570 VMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKK-LGIKPSLRTYH 628
+A +M ++ + G+ P+ +T+ +++S G S++ E++++M + IKP Y
Sbjct: 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466
Query: 629 PLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQG 688
++ REG++ ++ + + + P + ++ AL+ H +++ + ++ G
Sbjct: 467 CMIELLGREGLL--DEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--G 522
Query: 689 IRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGL 724
+ P+K+ Y L+ + G+ +E ++V +K KGL
Sbjct: 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 3e-19
Identities = 82/404 (20%), Positives = 167/404 (41%), Gaps = 49/404 (12%)
Query: 100 TFTNILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDE 159
TF N+L+S+ +S++ AL++ + G + L+ + + D ++F E
Sbjct: 439 TF-NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHE 497
Query: 160 IVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKK 219
+V G + T+G + + G + +A + M +P+ V+N LIS C +
Sbjct: 498 MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA-CGQSG 556
Query: 220 IRDAEKLFDEMCQRK-----LVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSL 274
D + FD + + K + P +T L+ G+ ++
Sbjct: 557 AVD--RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR----------------- 597
Query: 275 VMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGF--TYSMLFDGYSKCGDGEGVMALY 332
AK V + + H ++ G Y++ + S+ GD + +++Y
Sbjct: 598 ------------------AKEVYQMI--HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637
Query: 333 EELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRT 392
+++ +G + + S L++ G ++ A EI+ + G+ V +++++
Sbjct: 638 DDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697
Query: 393 GDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTN 452
+ +A+ + +++ L P T N LI CE ++ KA E + M G+ PN T
Sbjct: 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757
Query: 453 NTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCK 496
+ L+ R D +L + + G+KPN+V + LC
Sbjct: 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG-LCL 800
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 79.0 bits (196), Expect = 2e-18
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 202 PNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCK 251
P+V YN LI G+CK+ K+ +A KLF+EM +R + P TY+ L+DG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 4e-17
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 3/257 (1%)
Query: 103 NILLSILSSAKLPSEALQLYASTKADGTRLSLDSINV--LLECLVRCNQYDRALDLFDEI 160
N L+S + A + A KA+ + D I V L++ Q DRA +++ I
Sbjct: 546 NALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605
Query: 161 VCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKI 220
+ Y AV + + GD A I+D M+K +P+ ++ L+ +
Sbjct: 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665
Query: 221 RDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSL 280
A ++ + ++ + V+Y++L+ ++K L E +K K+ ++ N+L
Sbjct: 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL 725
Query: 281 LGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGF 340
+ C+ ++ +A V EM+ G P+ TYS+L + D + + L + G
Sbjct: 726 ITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785
Query: 341 RINSYTCSILLNALCKE 357
+ N C + LC
Sbjct: 786 KPNLVMCRCIT-GLCLR 801
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 4e-15
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 517 PNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCK 566
P+ YN LIDG C G++++A K F+EM KR + P + T++ LI+GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 6e-15
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 447 PNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCK 496
P+V T NTLIDGY + G ++ ++ EM+ G+KPNV +Y LI+ LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 5e-13
Identities = 20/50 (40%), Positives = 35/50 (70%)
Query: 412 PNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGR 461
P+ +T+NTLID +C+ G++++A + M ++G+ PNV T + LIDG +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 6e-13
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 691 PDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCN 740
PD +TYN+LI G+ ++GK+ E +L N+MK +G+ P TY+IL+ G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 6e-13
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 552 PTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGY 599
P +VT+N LI+G CKKG+V EA + ++ G+ P+V TY+ LI G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 8e-13
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 482 PNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSC 530
P+VV+Y +LI+ CK K+ EA + +M+ RG+ PN Y++LIDG C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 6e-12
Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 587 PDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGC 634
PDV+TYN+LI GY G ++ L+L+ MKK GIKP++ TY L+ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 9e-12
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 656 PDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGH 703
PD++ YN LI Y + G V++AL L +EM +GI+P+ TY+ LI G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 1e-11
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 275 VMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSK 321
V +N+L+ G+CK ++EEA + EM+ G P+ +TYS+L DG K
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 1e-11
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 377 PDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFC 425
PD V +NT++ GYC+ G + A+ +M+ G+ PN T++ LID C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 5e-11
Identities = 73/334 (21%), Positives = 144/334 (43%), Gaps = 24/334 (7%)
Query: 405 MENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGH 464
+E+ G P+ N ++ + G + A M E+ N+ + T+I G G+
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGN 204
Query: 465 FDKCFQILEEMENSGMKPNVVSYGSLIN-----WLCKDCKLLEAEIVLKDMENRGVLPNA 519
+ + F + EM G ++ ++ + + L VLK GV+ +
Sbjct: 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC-CVLK----TGVVGDT 259
Query: 520 QIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQ 579
+ LID G I+DA FD M ++ T V +N+++ G G EA + +
Sbjct: 260 FVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYE 315
Query: 580 ITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGI 639
+ SG++ D T++ +I +S L + + + + + G + L+ + G
Sbjct: 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR 375
Query: 640 VAVEK-LFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNS 698
+ + +F+ M + NL+ +NALI Y HG KA+ + M+ +G+ P+ +T+ +
Sbjct: 376 MEDARNVFDRMPRKNLIS----WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431
Query: 699 LIFGHLREGKLSEVKELVNDM-KVKGLIPKADTY 731
++ G + E+ M + + P+A Y
Sbjct: 432 VLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.6 bits (138), Expect = 1e-10
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 237 PTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCK 286
P VTYNTL+DGYCK G+ E+ L MK+ ++ ++ ++ L+ G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 9e-10
Identities = 68/311 (21%), Positives = 124/311 (39%), Gaps = 19/311 (6%)
Query: 494 LCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPT 553
LC +L +A +L+ M+ V + Y L C R +
Sbjct: 61 LCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRALSSHPSL 119
Query: 554 LVTF-NALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELY 612
V NA+++ + G ++ A + ++ D+ ++N L+ GY+ G + L LY
Sbjct: 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLY 175
Query: 613 ENMKKLGIKPSLRTYHPLLSGC-----IREGIVAVEKLFNEMLQINLVPDLLVYNALIHC 667
M G++P + T+ +L C + G ++ +++ D+ V NALI
Sbjct: 176 HRMLWAGVRPDVYTFPCVLRTCGGIPDLARG----REVHAHVVRFGFELDVDVVNALITM 231
Query: 668 YAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK 727
Y + GDV A ++ M R D +++N++I G+ G+ E EL M+ + P
Sbjct: 232 YVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287
Query: 728 ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCS 787
T ++ L D + + + GF + N L G EA+ + S
Sbjct: 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347
Query: 788 EISIVGKDAWT 798
+ +WT
Sbjct: 348 RMETKDAVSWT 358
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 9e-10
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 307 PDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCK 356
PD TY+ L DGY K G E + L+ E+ RG + N YT SIL++ LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 3e-09
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 201 RPNVFVYNVLISGFCKEKKIRDAEKLFDEM 230
+P+V YN LI G C+ ++ +A +L DEM
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 4e-09
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 167 PDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCK 216
PD TY + K G ++ A ++F+ M+K +PNV+ Y++LI G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 6e-09
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 513 RGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMV 546
+G+ P+ YN LIDG C GR+ +A + DEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 2e-08
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 343 NSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCR 391
+ T + L++ CK+GKVE A ++ + + G+ P+ ++ ++ G C+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.3 bits (114), Expect = 2e-07
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 552 PTLVTFNALINGLCKKGRVMEAEDML 577
P +VT+N LI+GLC+ GRV EA ++L
Sbjct: 5 PDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 6e-07
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 373 NGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQME 406
GL PD V +NT++ G CR G ++ A+ + +ME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 7e-07
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 409 GLAPNCITFNTLIDKFCELGEMDKAEEWVKRM 440
GL P+ +T+NTLID C G +D+A E + M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 8e-07
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 415 ITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNV 449
+T+NTLID C+ G +++A E K M E+G+ P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (108), Expect = 1e-06
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 443 KGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEME 476
KG+ P+V T NTLIDG R G D+ ++L+EME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 205 FVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPT 238
YN LI G CK ++ +A +LF EM +R + P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-06
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 275 VMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPD 308
V +N+L+ G CKA R+EEA + KEM+ G +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD 692
YN LI + G V++AL L EM ++GI PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 453 NTLIDGYGRMGHFDKCFQILEEMENSGMKPNV 484
NTLIDG + G ++ ++ +EM+ G++P+V
Sbjct: 4 NTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 4e-06
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 233 RKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMK 266
+ L P VTYNTL+DG C+ G ++ L + M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 730 TYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGL 773
TYN L+ GYC A + EM + G P+ Y+ L +GL
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 205 FVYNVLISGFCKEKKIRDAEKLFDEMCQRKL 235
YN LISG+CK K+ +A +LF EM ++ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-05
Identities = 15/34 (44%), Positives = 26/34 (76%)
Query: 687 QGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMK 720
+G++PD +TYN+LI G R G++ E EL+++M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 415 ITFNTLIDKFCELGEMDKAEEWVKRMLEKGV 445
+T+N+LI +C+ G++++A E K M EKGV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 240 VTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVS 273
VTYNTL+DG CK G E+ L + MK +E
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 275 VMFNSLLGGFCKAKRMEEAKSVCKEMEAHGF 305
V +NSL+ G+CKA ++EEA + KEM+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 3e-05
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 453 NTLIDGYGRMGHFDKCFQILEEMENSGMKP 482
N L+ + G D +LEEM+ SG+KP
Sbjct: 5 NALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 590 ITYNSLISGYSSLGSSQKCLELYENMKKLGI 620
+TYNSLISGY G ++ LEL++ MK+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 6e-05
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 590 ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS 623
+TYN+LI G G ++ LEL++ MK+ GI+P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 240 VTYNTLVDGYCKVGEFEKVSALRERMKRDKV 270
VTYN+L+ GYCK G+ E+ L + MK V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 380 VMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNC 414
V +NT++ G C+ G + A+ ++M+ G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 2e-04
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRP 691
YNAL+ A+ GD AL + EM G++P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 416 TFNTLIDKFCELGEMDKAEEWVKRMLEKGVSP 447
T+N L+ + G+ D A ++ M G+ P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 555 VTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDV 589
VT+N LI+GLCK GRV EA ++ ++ G+ PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGI 689
YN+LI Y + G +++AL L EM ++G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 453 NTLIDGYGRMGHFDKCFQILEEMENSGM 480
N+LI GY + G ++ ++ +EM+ G+
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 4e-04
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 338 RGFRINSYTCSILLNALCKEGKVEIAEEIVGK 369
+G + + T + L++ LC+ G+V+ A E++ +
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 4e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 589 VITYNSLISGYSSLGSSQKCLELYENMKKLGIKP 622
+ TYN+L+ + G L + E MK G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 521 IYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPT 553
YN LIDG C GR+++A + F EM +R + P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 20/98 (20%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 661 YNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMK 720
Y+AL+ ++ ++ + G PD+ N ++ H++ G L + + L ++M
Sbjct: 126 YDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP 185
Query: 721 VKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENG 758
+ L ++ ++ G + ++ A+ +REM+E+G
Sbjct: 186 ERNLA----SWGTIIGGLVDAGNYREAFALFREMWEDG 219
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (89), Expect = 6e-04
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 270 VEVSLVMFNSLLGGFCKAKRMEEAKSVCKEME 301
++ +V +N+L+ G C+A R++EA + EME
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 694 MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP 726
+TYN+LI G + G++ E EL +MK +G+ P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 7e-04
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 555 VTFNALINGLCKKGRVMEAEDMLPQITSSGL 585
VT+N+LI+G CK G++ EA ++ ++ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 7e-04
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 240 VTYNTLVDGYCKVGEFEKVSALRERMKRDKVE 271
TYN L+ K G+ + A+ E MK ++
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 8e-04
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 379 EVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAP 412
+N ++ + GD + A+ +++M+ GL P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 9e-04
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGL 724
TYNSLI G+ + GKL E EL +MK KG+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 274 LVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDP 307
L +N+LL KA + A +V +EM+A G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 138 NVLLECLVRCNQYDRALDLFDEIVCMGFRPD 168
N L++ L + + + AL+LF E+ G PD
Sbjct: 4 NTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 521 IYNMLIDGSCTMGRIKDAFKFFDEMVKR 548
YN LI G C G++++A + F EM ++
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.6 bits (93), Expect = 0.002
Identities = 43/207 (20%), Positives = 86/207 (41%), Gaps = 8/207 (3%)
Query: 518 NAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTL-VTFNALINGLCKKGRVMEAEDM 576
A + +L +GR+++A + ++ ++ E+ P L L L G+ EA ++
Sbjct: 58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117
Query: 577 LPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIR 636
L + + +PD+ + LG ++ LELYE +L + + L G +
Sbjct: 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALL 177
Query: 637 EGIVAVE---KLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDK 693
E + E +L + L++N D L Y + G ++AL E ++ + D
Sbjct: 178 EALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEAL----EYYEKALELDP 233
Query: 694 MTYNSLIFGHLREGKLSEVKELVNDMK 720
+L L +L +E + ++
Sbjct: 234 DNAEALYNLALLLLELGRYEEALEALE 260
|
Length = 291 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.003
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 653 NLVPDLLVYNALIHCYAEHGDVQKALVLHSEMV 685
L PD++ YN LI G V +A+ L EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.003
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 583 SGLNPDVITYNSLISGYSSLGSSQKCLELYENMK 616
GL PDV+TYN+LI G G + +EL + M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 32/169 (18%)
Query: 136 SINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGM 195
S N+LL V + A++LF+ +V G PD+ T+ + A + G + + E F M
Sbjct: 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615
Query: 196 E-KSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEM---------------CQ------- 232
E K PN+ Y ++ + K+ +A ++M C+
Sbjct: 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVEL 675
Query: 233 --------RKLVPTRVTYNTLV-DGYCKVGEFEKVSALRERMKRDKVEV 272
+L P V Y L+ + Y G++++V+ +R+ M+ + + V
Sbjct: 676 GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724
|
Length = 857 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 808 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.98 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.96 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.9 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.72 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.71 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.7 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.69 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.68 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.67 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.67 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.65 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.64 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.61 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.58 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.58 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.58 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.58 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.57 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.57 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.55 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.55 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.55 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.54 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.53 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.53 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.51 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.5 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.49 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.47 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.45 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.44 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.44 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.4 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.4 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.4 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.39 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.38 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.35 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.34 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.32 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.32 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.29 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.29 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.29 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.28 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.26 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.25 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.24 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.21 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.2 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.19 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.19 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.18 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.17 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.16 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.04 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.03 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.01 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.0 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.0 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.0 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.99 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.95 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.95 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.94 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.93 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.92 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.91 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.88 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.87 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.81 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.79 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.77 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.76 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.76 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.75 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.75 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.7 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.7 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.7 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.69 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.65 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.62 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.62 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.56 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.55 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.55 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.54 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.51 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.5 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.5 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.49 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.48 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.44 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.41 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.41 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.4 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.35 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.35 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.3 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.29 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.26 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.23 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.2 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.19 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.14 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.14 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.07 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.06 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.05 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.04 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.04 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.03 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.02 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.99 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.98 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.93 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.93 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.93 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.93 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.91 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.9 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.88 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.87 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.84 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.83 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.81 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.81 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.79 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.78 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.78 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.77 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.75 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.75 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.75 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.74 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.73 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.7 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.69 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.68 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.68 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.65 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.59 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.58 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.57 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.57 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.55 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.54 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.5 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.49 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.47 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.47 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.47 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.45 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.45 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.38 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.37 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.37 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.34 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.34 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.3 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.3 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.28 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.26 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.21 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.19 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.14 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.13 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.11 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.1 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.07 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.04 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.91 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.9 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.85 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.85 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.83 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.74 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.73 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.71 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.69 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.68 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.63 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.62 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.61 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.61 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.6 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.58 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.55 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.49 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.48 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.48 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.29 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.18 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.16 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.13 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.09 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.09 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.08 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.05 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.89 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.85 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.84 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 95.8 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.8 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.69 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.68 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.64 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.59 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.5 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.37 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.35 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.27 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.24 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.23 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.19 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.11 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.1 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.88 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.8 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.67 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.66 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.54 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.44 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.42 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.41 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.39 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.38 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.35 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.34 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.23 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 94.15 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.12 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.12 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.0 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.0 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.99 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.95 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.73 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.72 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.68 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.66 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.58 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.57 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.42 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.31 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.31 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.26 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.25 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 93.2 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.18 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.11 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.07 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 93.0 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.94 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.63 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.55 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.44 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.43 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 92.37 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.28 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.17 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.05 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.73 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.72 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 91.64 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 91.37 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.32 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.0 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.83 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.83 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 90.63 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.22 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 90.14 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 89.92 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 89.81 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.58 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 89.19 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 89.14 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.06 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 88.82 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.67 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 88.59 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 88.53 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 88.51 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.06 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 87.79 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 87.77 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.67 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.34 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 87.21 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 87.19 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 86.92 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 86.86 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 86.71 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.66 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 86.54 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 86.26 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.25 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.23 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 86.02 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 85.62 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 85.47 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 84.56 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 84.54 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 84.35 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 84.21 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 83.93 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 83.73 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 83.46 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.33 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 82.63 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 82.34 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 82.21 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 82.09 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.0 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 81.46 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 81.03 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 80.83 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.81 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 80.8 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.41 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 80.33 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 80.06 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-85 Score=755.18 Aligned_cols=671 Identities=20% Similarity=0.266 Sum_probs=605.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHH
Q 046719 101 FTNILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAV 180 (808)
Q Consensus 101 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (808)
..+.++..|++.|++++|..+|+.|.+.|.+|+..+|..++.+|.+.+.++.|..++..+.+.++.++...+|.++..|+
T Consensus 53 ~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~ 132 (857)
T PLN03077 53 DSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFV 132 (857)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 35678888999999999999999999888888999999999999999999999999999999888889999999999999
Q ss_pred hcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 046719 181 KIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSA 260 (808)
Q Consensus 181 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 260 (808)
+.|+++.|.++|++|. .||..+||.+|.+|++.|++++|+++|++|...|+.||..||++++.+|++.++++.+.+
T Consensus 133 ~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 133 RFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred hCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHH
Confidence 9999999999999985 468889999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 046719 261 LRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGF 340 (808)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 340 (808)
++..|.+.|..|+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|++++.+|++.|++++|.++|++|...|+
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999998863 6888999999999999999999999999999999
Q ss_pred CcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046719 341 RINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTL 420 (808)
Q Consensus 341 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 420 (808)
.||..+|+.++.++++.|+.+.|.+++..+.+.|+.||..+|++++.+|++.|++++|.++|++|.. ||..+|+.+
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~l 360 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAM 360 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998863 688899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 046719 421 IDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKL 500 (808)
Q Consensus 421 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 500 (808)
|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+++|++.|++
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence 99999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 046719 501 LEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQI 580 (808)
Q Consensus 501 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 580 (808)
++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+
T Consensus 441 ~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 441 DKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred HHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 999999998864 4788899999999999999999999999976 58899999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHH
Q 046719 581 TSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLL 659 (808)
Q Consensus 581 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~ 659 (808)
.+.|+.+|..++++|+++|++.|++++|.++|+++ .||..+|+.++.+|++.| .++|.++|++|.+.|+.||..
T Consensus 516 ~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~ 590 (857)
T PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590 (857)
T ss_pred HHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999999999999886 588999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMV-DQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGY 738 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 738 (808)
+|+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++.+|++.|++++|.+++++|. +.||..+|..|+.+|
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac 667 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNAC 667 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHH
Confidence 99999999999999999999999998 67889999999999999999999999999998873 789999999999999
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 046719 739 CNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAW 797 (808)
Q Consensus 739 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 797 (808)
...|+.+.|....+++++..|. +...|..|.+.|...|+|++|.++.+.|.+.+.+.-
T Consensus 668 ~~~~~~e~~e~~a~~l~~l~p~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~ 725 (857)
T PLN03077 668 RIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725 (857)
T ss_pred HHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCC
Confidence 8899999998888888887766 778888888999999999999999999998876643
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-85 Score=752.30 Aligned_cols=673 Identities=19% Similarity=0.302 Sum_probs=638.3
Q ss_pred hhhHHHHHHHHhCCCchHHHHHHHHHHhcCCCCCCChhhHHhhhhccCCCCCccHHHHHHHHHHcCCChhHHHHHHHHHH
Q 046719 47 NEQVRKIRILFQNNRTEAAQSLIKSIVLSNASPFTSPHELFSLFSVSSPYYKPTFTNILLSILSSAKLPSEALQLYASTK 126 (808)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 126 (808)
......+..+++.|++++|..+|+.+..... +++...+..++..|...+.++.|..++..+.
T Consensus 52 ~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 113 (857)
T PLN03077 52 HDSNSQLRALCSHGQLEQALKLLESMQELRV------------------PVDEDAYVALFRLCEWKRAVEEGSRVCSRAL 113 (857)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC------------------CCChhHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 3456678999999999999999998765321 1123334567888999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhh
Q 046719 127 ADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFV 206 (808)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 206 (808)
+.+..++...+|.|+..|++.|+++.|+.+|++|. .||..+||.+|.+|++.|++++|+++|++|...|+.||..+
T Consensus 114 ~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t 189 (857)
T PLN03077 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYT 189 (857)
T ss_pred HcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence 99998999999999999999999999999999996 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 046719 207 YNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCK 286 (808)
Q Consensus 207 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 286 (808)
|+.++.+|+..+++..+.+++..|.+.|+.||..+|++||.+|++.|++++|..+|++| ..||.++||.+|.+|++
T Consensus 190 ~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m----~~~d~~s~n~li~~~~~ 265 (857)
T PLN03077 190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFE 265 (857)
T ss_pred HHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC----CCCCcchhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999 56899999999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHH
Q 046719 287 AKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEI 366 (808)
Q Consensus 287 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 366 (808)
.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++
T Consensus 266 ~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v 345 (857)
T PLN03077 266 NGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345 (857)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 046719 367 VGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVS 446 (808)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 446 (808)
|++|.. ||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.
T Consensus 346 f~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 421 (857)
T PLN03077 346 FSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421 (857)
T ss_pred HhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCC
Confidence 999864 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHH
Q 046719 447 PNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLI 526 (808)
Q Consensus 447 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li 526 (808)
|+..+|+.|+++|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..+|+.++
T Consensus 422 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL 496 (857)
T PLN03077 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAAL 496 (857)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHH
Confidence 9999999999999999999999999999964 6889999999999999999999999999986 5899999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHH
Q 046719 527 DGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQ 606 (808)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 606 (808)
.+|++.|+++.+.+++..+.+.|+.++..+++.|+++|++.|++++|.++|+.+ .||..+||+||.+|++.|+.+
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999999999987 579999999999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 046719 607 KCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEML-QINLVPDLLVYNALIHCYAEHGDVQKALVLHSEM 684 (808)
Q Consensus 607 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 684 (808)
+|+++|++|.+.|+.||..||+.++.+|.+.| +++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++|
T Consensus 572 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 99999999999999999999999999999999 999999999999 6899999999999999999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH
Q 046719 685 VDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSF 763 (808)
Q Consensus 685 ~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 763 (808)
++.||..+|++|+.+|...|+.+.+....+++.+ +.|+ ...|..+.+.|...|+|++|.++.+.|.+.|+++++
T Consensus 652 ---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 652 ---PITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred ---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCC
Confidence 3789999999999999999999999999999988 6674 666778899999999999999999999999988766
Q ss_pred H
Q 046719 764 C 764 (808)
Q Consensus 764 ~ 764 (808)
.
T Consensus 727 g 727 (857)
T PLN03077 727 G 727 (857)
T ss_pred C
Confidence 4
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-71 Score=622.37 Aligned_cols=546 Identities=18% Similarity=0.272 Sum_probs=495.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHH
Q 046719 131 RLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFR-PDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNV 209 (808)
Q Consensus 131 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 209 (808)
.++...+..++..|.+.|++++|+++|++|...|+. ++...++.++..|.+.|.+++|..+|+.|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 456667888999999999999999999999998864 6777888899999999999999999999864 89999999
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC
Q 046719 210 LISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKR 289 (808)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 289 (808)
++.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHh--CCCCcChhcHHHHHHHHHhcCChHHHHHHH
Q 046719 290 MEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSG--RGFRINSYTCSILLNALCKEGKVEIAEEIV 367 (808)
Q Consensus 290 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (808)
+++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999976 678999999999999999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 046719 368 GKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSP 447 (808)
Q Consensus 368 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 447 (808)
+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHH
Q 046719 448 NVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLID 527 (808)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 527 (808)
|..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 046719 528 GSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQK 607 (808)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 607 (808)
+|++.|++++|.++|++|.+.|+.||..+|+.++..|. ++++++..+.+.+.... + .......+..++
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n~w~~~ 830 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIENKWTSW 830 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccccchHHH
Confidence 99999999999999999999999999999999987654 24666666555444311 0 011112234467
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 046719 608 CLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVD 686 (808)
Q Consensus 608 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 686 (808)
|+.+|++|.+.|+.||..||+.++.++++.+ ...+..+++.|...+..|+..+|+++++++++. .++|..++++|.+
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 9999999999999999999999997776777 888999999988888889999999999988432 4689999999999
Q ss_pred CCCCCCHH
Q 046719 687 QGIRPDKM 694 (808)
Q Consensus 687 ~g~~pd~~ 694 (808)
.|+.|+..
T Consensus 909 ~Gi~p~~~ 916 (1060)
T PLN03218 909 LGVVPSVS 916 (1060)
T ss_pred cCCCCCcc
Confidence 99999875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-71 Score=618.73 Aligned_cols=547 Identities=17% Similarity=0.276 Sum_probs=488.3
Q ss_pred CCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCC-CCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHH
Q 046719 165 FRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRT-RPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYN 243 (808)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 243 (808)
..++...|..++..|++.|++++|+++|++|.+.|+ .++..+++.++.+|++.|.+++|..+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 445777888889999999999999999999998886 46777888899999999999999999998874 8999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCC
Q 046719 244 TLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCG 323 (808)
Q Consensus 244 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 323 (808)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 046719 324 DGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIE--NGLVPDEVMFNTIVSGYCRTGDLNRAMLA 401 (808)
Q Consensus 324 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 401 (808)
++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+++|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999976 57889999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 046719 402 IQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMK 481 (808)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 481 (808)
|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 046719 482 PNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALI 561 (808)
Q Consensus 482 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 561 (808)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HH
Q 046719 562 NGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IV 640 (808)
Q Consensus 562 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~ 640 (808)
.+|++.|++++|.+++.+|.+.|+.||..+|++++..|. +++++|..+.+.+.... + .......+ .+
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n~w~~ 829 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIENKWTS 829 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccccchHH
Confidence 999999999999999999999999999999999987654 34666666655444211 0 01111223 56
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 046719 641 AVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMK 720 (808)
Q Consensus 641 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 720 (808)
.|..+|++|++.|+.||..+|+.++.++++.+..+.+..+++.|...+..|+..+|+.|+.++.+. .++|..++++|.
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 799999999999999999999999988888899999999999998888888999999999988543 468999999999
Q ss_pred HCCCCCCHH
Q 046719 721 VKGLIPKAD 729 (808)
Q Consensus 721 ~~g~~p~~~ 729 (808)
+.|+.|+..
T Consensus 908 ~~Gi~p~~~ 916 (1060)
T PLN03218 908 SLGVVPSVS 916 (1060)
T ss_pred HcCCCCCcc
Confidence 999999754
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-63 Score=558.52 Aligned_cols=573 Identities=19% Similarity=0.277 Sum_probs=387.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHH
Q 046719 131 RLSLDSINVLLECLVRCNQYDRALDLFDEIVCMG-FRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNV 209 (808)
Q Consensus 131 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 209 (808)
..+..+|+.++..|.+.|++++|+.+|++|...+ +.||..+|+.++.+|.+.|+++.|.+++..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3455577888888888888888888887777654 567777777777777777777777777777777777777777777
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC
Q 046719 210 LISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKR 289 (808)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 289 (808)
++++|++.|++++|.++|++|.+ ||.++|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 77777777777777777777753 56677777777777777777777777777666666666666666666666666
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHH
Q 046719 290 MEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGK 369 (808)
Q Consensus 290 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 369 (808)
.+.+.+++..+.+.|+.||..+|++ |+.+|++.|++++|.++|+.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~-----------------------------------Li~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCA-----------------------------------LIDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHH-----------------------------------HHHHHHHCCCHHHHHHHHHh
Confidence 6666666666666665555555555 55555555555555555555
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 046719 370 EIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNV 449 (808)
Q Consensus 370 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 449 (808)
|.+ +|.++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||.
T Consensus 285 m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 285 MPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred CCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 532 4777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHH
Q 046719 450 KTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGS 529 (808)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 529 (808)
.+|+.|+++|++.|++++|.++|++|. .||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 888888888888888888888888875 3577777777777777777777777777777777777777777777777
Q ss_pred HhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 046719 530 CTMGRIKDAFKFFDEMVK-REMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKC 608 (808)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 608 (808)
++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 777777777777777765 366777777777777777777777777766654 3466667777777777777777666
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 046719 609 LELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQG 688 (808)
Q Consensus 609 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 688 (808)
..+++++.+. . +.+..+|+.|+++|++.|++++|.+++++|.+.|
T Consensus 514 ~~~~~~l~~~--~---------------------------------p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 514 RLAAEKLYGM--G---------------------------------PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHHhCC--C---------------------------------CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 6666665431 1 2234567777778888888888888888888777
Q ss_pred CCCCH-HHHHHH-------HHHHHhc----CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH--H
Q 046719 689 IRPDK-MTYNSL-------IFGHLRE----GKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYRE--M 754 (808)
Q Consensus 689 ~~pd~-~~~~~l-------~~~~~~~----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~ 754 (808)
+.... .+|..+ +.....+ .-++...++..+|.+.|..|+......=+.- ...++.+..-.+ +
T Consensus 559 ~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~----~~~~~~~~~hsekla 634 (697)
T PLN03081 559 LSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDE----DEEKVSGRYHSEKLA 634 (697)
T ss_pred CccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccH----HHHHHHHHhccHHHH
Confidence 65322 232211 1000001 1134556677788888988875332110000 000111111000 1
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 755 FENGFIP-SFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 755 ~~~~~~~-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
+..|.-. .+..-..+..-+.-+|+-+.|.+++.++...
T Consensus 635 ~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r 673 (697)
T PLN03081 635 IAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKR 673 (697)
T ss_pred HHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcce
Confidence 1122210 1111123344456678888999988887653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-63 Score=557.23 Aligned_cols=471 Identities=21% Similarity=0.320 Sum_probs=370.6
Q ss_pred cHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHH
Q 046719 100 TFTNILLSILSSAKLPSEALQLYASTKADG-TRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQA 178 (808)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (808)
..++.++..+.+.|++++|+++|..|...+ ..|+..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.++.+
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 346778999999999999999999998764 6789999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 046719 179 AVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKV 258 (808)
Q Consensus 179 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 258 (808)
|++.|+++.|.++|++|. .||..+||.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+.+.+
T Consensus 168 y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 999999999999999995 4799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 046719 259 SALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGR 338 (808)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 338 (808)
.+++..+.+.|..+|..+|+.||.+|++.|++++|.++|++|.+ +|..+|++|+.+|++.|+.++|.++|++|.+.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999964 58888888888888888888888888888777
Q ss_pred CCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 046719 339 GFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFN 418 (808)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 418 (808)
|+.||..+|+.++.+|++.|++++|.+++..+.+.|+.||..+|++++++|++.|++++|.++|++|.+ ||..+|+
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n 395 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWN 395 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777643 4666677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHhc
Q 046719 419 TLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMEN-SGMKPNVVSYGSLINWLCKD 497 (808)
Q Consensus 419 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~ 497 (808)
.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 77777777777777777777766666666666666666666666666666666666654 45666666666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 046719 498 CKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDML 577 (808)
Q Consensus 498 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 577 (808)
|++++|.+++++| +..|+..+|++++.+|+..|+++.|..+++++.+.+ +.+..+|+.|+++|++.|++++|.+++
T Consensus 476 G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 476 GLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred CCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 6666666555543 244555555555555555555555555555554321 112445555555555555555555555
Q ss_pred HHHHhCCCC
Q 046719 578 PQITSSGLN 586 (808)
Q Consensus 578 ~~~~~~~~~ 586 (808)
+.|.+.|+.
T Consensus 552 ~~m~~~g~~ 560 (697)
T PLN03081 552 ETLKRKGLS 560 (697)
T ss_pred HHHHHcCCc
Confidence 555555543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=417.86 Aligned_cols=721 Identities=13% Similarity=0.057 Sum_probs=392.2
Q ss_pred hHHHHHHHHhCCCchHHHHHHHHHHhcCCCCCCChh-------------hHHhhhh--ccCCCCCccHHHHHHHHHHcCC
Q 046719 49 QVRKIRILFQNNRTEAAQSLIKSIVLSNASPFTSPH-------------ELFSLFS--VSSPYYKPTFTNILLSILSSAK 113 (808)
Q Consensus 49 ~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~ 113 (808)
.......+...|++++|...++.++...+....... +....+. ....|..+.....+...+...|
T Consensus 128 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 207 (899)
T TIGR02917 128 LALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG 207 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Confidence 444556667778888888877777665543221110 1111110 0112334445556666777788
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHH
Q 046719 114 LPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFD 193 (808)
Q Consensus 114 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 193 (808)
++++|...|....... +.+..++..++..+...|++++|...++.+.+..+. +...+......+...|++++|...|+
T Consensus 208 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~ 285 (899)
T TIGR02917 208 NIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQ 285 (899)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888888887777654 346667777777777788888888777777765443 22333333334455666666666666
Q ss_pred HhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC
Q 046719 194 GMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVS 273 (808)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 273 (808)
++.+.++. +...+..+...+...|++++|...|+.+.+... .+...+..+...+.+.|++++|...++.+.... +.+
T Consensus 286 ~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~ 362 (899)
T TIGR02917 286 DALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDD 362 (899)
T ss_pred HHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCC
Confidence 66554321 222333344445555566666655555554422 234444455555555555555555555554432 223
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCC-------------
Q 046719 274 LVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGF------------- 340 (808)
Q Consensus 274 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------------- 340 (808)
...+..+...+.+.|++++|.++|+++.+... .+...+..+...+...|++++|.+.++.+.+.+.
T Consensus 363 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 441 (899)
T TIGR02917 363 PAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSY 441 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHH
Confidence 44555555555555555555555555544321 1333444444445555555555555554444322
Q ss_pred --------------------CcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 046719 341 --------------------RINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAML 400 (808)
Q Consensus 341 --------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 400 (808)
+.+..++..+...+...|++++|.+.|.++.+..+. +...+..++..+...|++++|..
T Consensus 442 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 442 LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHH
Confidence 223444455555555555555555555555443322 33344445555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 046719 401 AIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGM 480 (808)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 480 (808)
.++++.+.+.. +..++..+...+...|+.++|..++.++.+.+. .+...+..++..|.+.|++++|..+++++... .
T Consensus 521 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~ 597 (899)
T TIGR02917 521 RFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADA-A 597 (899)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-C
Confidence 55555544322 444555555555555555555555555544322 23444455555555555555555555555443 2
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 046719 481 KPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNAL 560 (808)
Q Consensus 481 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 560 (808)
+.+...|..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|...|+++.+.. +.+..++..+
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 3445555555555555666666666665555442 2244455555555555666666666665555432 2245555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-H
Q 046719 561 INGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-I 639 (808)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~ 639 (808)
+..+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...|+++... .|+..++..+...+...| .
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCH
Confidence 555666666666666666555543 234445555555666666666666666666553 233345555555555566 6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 046719 640 VAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDM 719 (808)
Q Consensus 640 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~ 719 (808)
++|.+.++++++.. +.+...++.++..|...|++++|.++|+++.+.. +++..+++.+++.+...|+ .+|+.+++++
T Consensus 753 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 753 AEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 66666666665543 3445555666666666666666666666666532 3344456666666666666 5566666666
Q ss_pred HHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046719 720 KVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEIS 790 (808)
Q Consensus 720 ~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 790 (808)
.+. .| ++.++..++.++...|++++|.++++++++.++. ++.++..++.+|.+.|++++|..++++|+
T Consensus 830 ~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 830 LKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred Hhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 552 23 3445556666666666666666666666666554 56666666666666666666666666654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-42 Score=406.58 Aligned_cols=732 Identities=13% Similarity=0.049 Sum_probs=509.4
Q ss_pred hhhHHHHHHHHhCCCchHHHHHHHHHHhcCCCCC--------------CChhhHHhhhhc--cCCCCCccHHHHHHHHHH
Q 046719 47 NEQVRKIRILFQNNRTEAAQSLIKSIVLSNASPF--------------TSPHELFSLFSV--SSPYYKPTFTNILLSILS 110 (808)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~ 110 (808)
.......+.+...|++++|...+........... .........+.. ...|..+.....+...+.
T Consensus 91 ~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 170 (899)
T TIGR02917 91 QVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL 170 (899)
T ss_pred hhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 4456677889999999999988865432111110 011111222211 122344455566788899
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHH
Q 046719 111 SAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACE 190 (808)
Q Consensus 111 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 190 (808)
..|++++|..++..+.... +.+...+..+...+...|++++|...|+++....+. +...+..++..+...|++++|..
T Consensus 171 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~ 248 (899)
T TIGR02917 171 AENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN-NPAVLLALATILIEAGEFEEAEK 248 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998765 457788999999999999999999999999987665 78889999999999999999999
Q ss_pred HHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046719 191 IFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKV 270 (808)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 270 (808)
.++.+.+..+. +...+......+...|++++|...|+++.+.+.. +...+..+...+...|++++|...++.+.+..+
T Consensus 249 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 326 (899)
T TIGR02917 249 HADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAP 326 (899)
T ss_pred HHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999886543 3444555556677899999999999999887533 344555667788899999999999999987643
Q ss_pred CcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHH
Q 046719 271 EVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSIL 350 (808)
Q Consensus 271 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 350 (808)
.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|.+.|+++.+... .+...+..+
T Consensus 327 -~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 403 (899)
T TIGR02917 327 -NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQL 403 (899)
T ss_pred -CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHH
Confidence 456778888999999999999999999998764 34677889999999999999999999999987643 345566667
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCC---------------------------------CCHhhHHHHHHHHHhcCCHHH
Q 046719 351 LNALCKEGKVEIAEEIVGKEIENGLV---------------------------------PDEVMFNTIVSGYCRTGDLNR 397 (808)
Q Consensus 351 ~~~~~~~g~~~~a~~~~~~~~~~~~~---------------------------------~~~~~~~~li~~~~~~g~~~~ 397 (808)
...+...|++++|.+.+..+.+..+. ++..+|..+...|...|++++
T Consensus 404 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 404 GISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHH
Confidence 77777778877777777776655432 133344444444555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046719 398 AMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMEN 477 (808)
Q Consensus 398 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 477 (808)
|...|+++.+.... +...+..+...+...|++++|.+.++.+.+... .+..++..+...+.+.|+.++|..+++++..
T Consensus 484 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 561 (899)
T TIGR02917 484 AREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561 (899)
T ss_pred HHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555554443221 333444444555555555555555555544322 2444555555555555566666665555544
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 046719 478 SGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTF 557 (808)
Q Consensus 478 ~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 557 (808)
.+ +.+...+..++..+.+.|++++|..+++.+.+.. +.+...|..++..+...|++++|+..|+.+.+.. +.+...+
T Consensus 562 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 638 (899)
T TIGR02917 562 LN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALAL 638 (899)
T ss_pred hC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 32 3344555556666666666666666666665542 3355566666666667777777777776666542 3345566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHc
Q 046719 558 NALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIRE 637 (808)
Q Consensus 558 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 637 (808)
..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|..+++.+.+.. +.+...+..+...+...
T Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 716 (899)
T TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQ 716 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHC
Confidence 666666667777777777777666542 2345666667777777777777777777776643 34555666666667777
Q ss_pred C-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 046719 638 G-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELV 716 (808)
Q Consensus 638 ~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~ 716 (808)
| +++|.+.|+++...+ |+..++..++.++.+.|++++|.+.++++.+. .+.+...+..++..|...|++++|..++
T Consensus 717 g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 717 KDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHY 793 (899)
T ss_pred CCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 7 777777777777753 44456666777777788888888888877774 2445567777888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 046719 717 NDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDA 796 (808)
Q Consensus 717 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 796 (808)
+++.+.. ++++..+..++..+...|+ ++|+.+++++++..+. ++..+..++.++...|++++|..+++++++.+|.+
T Consensus 794 ~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 870 (899)
T TIGR02917 794 RTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870 (899)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 8887742 3456777788888888888 7788888888877655 66777788888888888888888888888888775
Q ss_pred Cc
Q 046719 797 WT 798 (808)
Q Consensus 797 ~~ 798 (808)
+.
T Consensus 871 ~~ 872 (899)
T TIGR02917 871 AA 872 (899)
T ss_pred hH
Confidence 44
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-29 Score=297.90 Aligned_cols=650 Identities=11% Similarity=0.037 Sum_probs=452.8
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhH------------
Q 046719 105 LLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTY------------ 172 (808)
Q Consensus 105 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------ 172 (808)
.++.....++.+.|.+.+.++.... +.++.++..++..+.+.|+.++|...+++..+..+. +...+
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCc
Confidence 4566788899999999999998765 457888999999999999999999999999987655 33322
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHhhhCCCCCChh-hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046719 173 ----GKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVF-VYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVD 247 (808)
Q Consensus 173 ----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 247 (808)
....+.+.+.|++++|+..|+++.+.++ |+.. ............|+.++|++.|+++.+..+. +...+..+..
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ 189 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLAL 189 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 2334467889999999999999987643 2322 1111122223458999999999999887433 6667888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhCCChH
Q 046719 248 GYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDG-FTYSMLFDGYSKCGDGE 326 (808)
Q Consensus 248 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~ 326 (808)
.+.+.|++++|...++++...... +. ..+...++.+...+..++. ..+...+..+-.....+
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~-~~----------------~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~ 252 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAG-RD----------------AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVA 252 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCc-hH----------------HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHH
Confidence 899999999999999998653211 00 1111111222211111111 11112222222222334
Q ss_pred HHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046719 327 GVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQME 406 (808)
Q Consensus 327 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 406 (808)
.+...+.........|... .......+...|++++|+..|++.++..+. +...+..+...|.+.|++++|+..|++..
T Consensus 253 ~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 253 AARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555544332222211 122345566778888888888887776443 66677778888888888888888888877
Q ss_pred HCCCCCC-HHHH------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 046719 407 NHGLAPN-CITF------------NTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILE 473 (808)
Q Consensus 407 ~~~~~~~-~~~~------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 473 (808)
+...... ...| ......+.+.|++++|+..++++++... .+...+..+...+...|++++|++.|+
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~ 409 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQ 409 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6543211 1111 1223456678888888888888887643 256667777888888888888888888
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--------cchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046719 474 EMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVL--------PNAQIYNMLIDGSCTMGRIKDAFKFFDEM 545 (808)
Q Consensus 474 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 545 (808)
+..+.. +.+...+..+...+. .++.++|...++.+...... .....+..+...+...|++++|++.|++.
T Consensus 410 ~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~A 487 (1157)
T PRK11447 410 QALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQR 487 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 887652 334555666666554 45678888777654322100 01223556677788899999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHH
Q 046719 546 VKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLR 625 (808)
Q Consensus 546 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 625 (808)
++.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...++.++|+..++.+......++..
T Consensus 488 l~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~ 565 (1157)
T PRK11447 488 LALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQ 565 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHH
Confidence 8863 3367778888889999999999999999988743 2244555555566778899999999988765432222221
Q ss_pred ---------hHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHH
Q 046719 626 ---------TYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKM 694 (808)
Q Consensus 626 ---------~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~ 694 (808)
.+..+...+...| .++|.++++. .+.+...+..+...+.+.|++++|+..|+++++. .| +..
T Consensus 566 ~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~ 638 (1157)
T PRK11447 566 ELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNAD 638 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH
Confidence 1223455677788 9999998872 3556667788999999999999999999999984 55 556
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-----HHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPS-----FCIYNE 768 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~ 768 (808)
.+..++..+...|++++|.+.++++.+ ..| +..++..++.++...|++++|..+++++++..++.+ ...+..
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~ 716 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRD 716 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHH
Confidence 899999999999999999999999887 445 456677889999999999999999999998654322 246667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 046719 769 LTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 769 l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
++..+...|++++|+..+++++.
T Consensus 717 ~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 717 AARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 78999999999999999999975
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-29 Score=295.19 Aligned_cols=660 Identities=13% Similarity=0.051 Sum_probs=460.5
Q ss_pred cchhhhHHHHHHHHhCCCchHHHHHHHHHHhcCCCCCCChhhHHhhhhccCCCCCccHHHHHHHHHHcCCChhHHHHHHH
Q 046719 44 QERNEQVRKIRILFQNNRTEAAQSLIKSIVLSNASPFTSPHELFSLFSVSSPYYKPTFTNILLSILSSAKLPSEALQLYA 123 (808)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 123 (808)
.....++..++.-...++.+.|++.+.+++...+ .++.+...+...+...|+.++|...++
T Consensus 26 ~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p-------------------~~p~~~~~~~~~~l~~g~~~~A~~~l~ 86 (1157)
T PRK11447 26 TAQQQLLEQVRLGEATHREDLVRQSLYRLELIDP-------------------NNPDVIAARFRLLLRQGDSDGAQKLLD 86 (1157)
T ss_pred CHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCC-------------------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3445588889999999999999999998776544 345556667888899999999999999
Q ss_pred HHHhCCCCCCHHH----------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHH
Q 046719 124 STKADGTRLSLDS----------------INVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKR 187 (808)
Q Consensus 124 ~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 187 (808)
++.+..+ .+... ...+++.+.+.|++++|...|+.+...++.................|+.++
T Consensus 87 ~l~~~~P-~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~ 165 (1157)
T PRK11447 87 RLSQLAP-DSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPE 165 (1157)
T ss_pred HHHhhCC-CChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHH
Confidence 9988763 33332 244566789999999999999999876544222222122222334699999
Q ss_pred HHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046719 188 ACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKR 267 (808)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 267 (808)
|+..++++.+..+. +...+..+...+...|+.++|++.|+++.+.. +.. ...+...++.+..
T Consensus 166 A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~--~~~---------------~~aa~~~~~~l~~ 227 (1157)
T PRK11447 166 AINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSP--AGR---------------DAAAQLWYGQIKD 227 (1157)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC--Cch---------------HHHHHHHHHHHhc
Confidence 99999999987543 67788899999999999999999999997642 111 0111112222222
Q ss_pred CCCCcC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhc
Q 046719 268 DKVEVS-LVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYT 346 (808)
Q Consensus 268 ~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 346 (808)
.+..+. ...+...+..+-.....+.|...+..+......|+... ..+...+...|++++|+..|++.++... .+..+
T Consensus 228 ~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a 305 (1157)
T PRK11447 228 MPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEA 305 (1157)
T ss_pred cCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHH
Confidence 111111 11222222222233334455555555544322333221 2334556667777777777777776532 25566
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhhH------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 046719 347 CSILLNALCKEGKVEIAEEIVGKEIENGLVPD-EVMF------------NTIVSGYCRTGDLNRAMLAIQQMENHGLAPN 413 (808)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 413 (808)
+..+...+.+.|++++|+..|++.++..+... ...| ......+.+.|++++|+..|+++.+.... +
T Consensus 306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~ 384 (1157)
T PRK11447 306 LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-D 384 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-C
Confidence 66777777777777777777777776543221 1111 12244566788888888888888876433 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--------CCCHh
Q 046719 414 CITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGM--------KPNVV 485 (808)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--------~~~~~ 485 (808)
...+..+...+...|++++|++.|+++.+.... +...+..+...|. .++.++|...++.+..... .....
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 667777888888888888888888888876322 4555666666664 4567888887766533210 00122
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 046719 486 SYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLC 565 (808)
Q Consensus 486 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 565 (808)
.+..+...+...|++++|+..|++..+..+. +...+..+...+.+.|++++|...++++++.. +.+...+..+...+.
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3555667788899999999999998886433 56677888889999999999999999988753 335555555666677
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHH
Q 046719 566 KKGRVMEAEDMLPQITSSGLNPDVI---------TYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIR 636 (808)
Q Consensus 566 ~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 636 (808)
..++.++|...++.+......++.. .+..++..+...|+.++|..+++. .+++...+..+...+.+
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~ 615 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQ 615 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHH
Confidence 8889999999888765432222221 233456778899999999999882 24556667778888889
Q ss_pred cC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHH
Q 046719 637 EG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEVKE 714 (808)
Q Consensus 637 ~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~ 714 (808)
.| .++|.+.|+++++.. +.+...+..++.+|...|++++|++.++++.+. .|+ ..++..++.++...|++++|.+
T Consensus 616 ~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 99 999999999999864 456788899999999999999999999998873 554 4577789999999999999999
Q ss_pred HHHHHHHCCC--CC---CHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 715 LVNDMKVKGL--IP---KADTYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 715 ~~~~~~~~g~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
++++++.... .| +...+..++..+...|++++|+..|++++.
T Consensus 693 ~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 693 TFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999987421 11 224566778899999999999999999975
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-26 Score=253.82 Aligned_cols=644 Identities=11% Similarity=0.026 Sum_probs=439.9
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHH
Q 046719 109 LSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRA 188 (808)
Q Consensus 109 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 188 (808)
+...|++++|...|+...+..+. +..++..|...|.+.|++++|+..++++++..+. |...+..+. .+ +++++|
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~-n~~~~~~La-~i---~~~~kA 127 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG-DARLERSLA-AI---PVEVKS 127 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cHHHHHHHH-Hh---ccChhH
Confidence 44559999999999999987754 5888999999999999999999999999987653 666665552 22 899999
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHH--------HHccCCHhHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChhHHH
Q 046719 189 CEIFDGMEKSRTRPNVFVYNVLISG--------FCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTL-VDGYCKVGEFEKVS 259 (808)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~a~ 259 (808)
..+|+++.+..+. +..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|+
T Consensus 128 ~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 128 VTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 9999999987543 55566666655 6555 55555555 3333344456555555 89999999999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHc-cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 046719 260 ALRERMKRDKVEVSLVMFNSLLGGFCK-AKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGR 338 (808)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 338 (808)
.+++++.+.++. +......+..+|.. .++ +++..+++. .+..+...+..++..|.+.|+.++|.++++++...
T Consensus 203 ~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 203 TLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 999999998654 45556667778887 477 888888653 23357888999999999999999999999997655
Q ss_pred CCC-cChhcHHHHHHHHHhcCChH-HHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 046719 339 GFR-INSYTCSILLNALCKEGKVE-IAEEIVGKEIENGLVPD-EVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCI 415 (808)
Q Consensus 339 ~~~-~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 415 (808)
... |...+|.-+ +.+.+... .|..-|.+- ..++ ......++..+.+.++++.+.++.. +.|...
T Consensus 277 ~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 343 (987)
T PRK09782 277 FTTDAQEKSWLYL---LSKYSANPVQALANYTVQ----FADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANE 343 (987)
T ss_pred ccCCCccHHHHHH---HHhccCchhhhccchhhh----hHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcch
Confidence 332 333333333 33433332 111111110 0111 1123344777788888885554421 233333
Q ss_pred HHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-C-CCCCHhhHHHHH
Q 046719 416 TFNTLIDKF--CELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENS-G-MKPNVVSYGSLI 491 (808)
Q Consensus 416 ~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~-~~~~~~~~~~ll 491 (808)
.. .+... ...+...++.+.+..|.+... -+......+.....+.|+.++|.++|+..... + -..+......++
T Consensus 344 ~~--~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 344 ML--EERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred HH--HHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 21 22222 233566666666666665522 25555555555667788888888888887652 1 122344455666
Q ss_pred HHHHhcCC---HHHHHHH----------------------HHHHHhC-CC-Cc--chhHHHHHHHHHHhcCCHHHHHHHH
Q 046719 492 NWLCKDCK---LLEAEIV----------------------LKDMENR-GV-LP--NAQIYNMLIDGSCTMGRIKDAFKFF 542 (808)
Q Consensus 492 ~~~~~~~~---~~~A~~~----------------------~~~m~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~ 542 (808)
..|.+.+. ..++..+ +...... +. ++ +...|..+..++.. +++++|+..+
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 66666655 2222222 1122111 11 23 45667777777766 7888888877
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc
Q 046719 543 DEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKP 622 (808)
Q Consensus 543 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 622 (808)
.+.... .|+......+...+...|++++|...++++... +|+...+..+...+.+.|+.++|...+++..+.. ++
T Consensus 500 ~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~ 574 (987)
T PRK09782 500 LQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LG 574 (987)
T ss_pred HHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Cc
Confidence 777765 245444444455556888899998888887654 4445556677777888888888998888888753 22
Q ss_pred CHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 046719 623 SLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-KMTYNSLI 700 (808)
Q Consensus 623 ~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~ 700 (808)
+...+..+...+...| +++|...+++.++. .|+...+..+..++.+.|++++|+..+++.++ ..|+ ...++.++
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG 650 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALG 650 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 2333333333444557 88888888888875 45677888888888888999999999988888 4554 44788888
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 046719 701 FGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKL 779 (808)
Q Consensus 701 ~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 779 (808)
.++...|++++|+..++++++ ..| +...+..++.++...|++++|...++++++..|. +..+....++.+.+..++
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~ 727 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQRFNF 727 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHH
Confidence 888888899999988888887 455 5677888888888899999999999988887665 667777888888888888
Q ss_pred hHHHHHHHHHHHcCCCCCc
Q 046719 780 KEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 780 ~~A~~~~~~~~~~~~~~~~ 798 (808)
+.|.+-+++....+++.|.
T Consensus 728 ~~a~~~~~r~~~~~~~~~a 746 (987)
T PRK09782 728 RRLHEEVGRRWTFSFDSSI 746 (987)
T ss_pred HHHHHHHHHHhhcCccchh
Confidence 8888888888888887773
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-25 Score=249.34 Aligned_cols=615 Identities=11% Similarity=0.002 Sum_probs=445.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHh
Q 046719 142 ECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIR 221 (808)
Q Consensus 142 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 221 (808)
..+...|++++|+..|+++++..+. +..++..+...|...|++++|+...++..+..+ -|...+..+ ..+ ++++
T Consensus 52 ~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~i---~~~~ 125 (987)
T PRK09782 52 LKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AAI---PVEV 125 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HHh---ccCh
Confidence 3344559999999999999998887 588999999999999999999999999998643 244444444 333 8999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH--------HHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH-HHHHHccCChhH
Q 046719 222 DAEKLFDEMCQRKLVPTRVTYNTLVDG--------YCKVGEFEKVSALRERMKRDKVEVSLVMFNSL-LGGFCKAKRMEE 292 (808)
Q Consensus 222 ~A~~~~~~m~~~~~~p~~~~~~~li~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~ 292 (808)
+|..+++++....+. +..++..+... |.+. ++|...++ .....+.|+..+.... ...|.+.|++++
T Consensus 126 kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 126 KSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred hHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 999999999987543 45555555554 6555 55555555 4333444455544444 899999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHh-CCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 046719 293 AKSVCKEMEAHGFDPDGFTYSMLFDGYSK-CGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEI 371 (808)
Q Consensus 293 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (808)
|+.++.++.+.+.. +..-...|..+|.. .++ +++..+++. ..+.+...+..++..|.+.|+.++|.+++.++.
T Consensus 201 Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 201 ADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 99999999998643 45557777778887 467 888887654 233577888899999999999999999999876
Q ss_pred HCCCC-CCHhhHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 046719 372 ENGLV-PDEVMFNTIVSGYCRTGDLN-RAMLAIQQMENHGLAPNC-ITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPN 448 (808)
Q Consensus 372 ~~~~~-~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 448 (808)
..... |+..+|.-+ +.+.+... .|..-|.+ . ..++. .....++..+.+.+.++-++++.. +.|.
T Consensus 275 ~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 341 (987)
T PRK09782 275 PLFTTDAQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPA 341 (987)
T ss_pred ccccCCCccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCc
Confidence 54333 455455444 33444332 12222222 0 11111 122334778888999997776532 2333
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCcchhHHHHHH
Q 046719 449 VKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENR-G-VLPNAQIYNMLI 526 (808)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~-~~~~~~~~~~li 526 (808)
......-..+....+...++...+..|... .+-+....-.+.-...+.|+.++|..+|+..... + ...+......++
T Consensus 342 ~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 342 NEMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred chHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 332211111222346777777777777764 2336666666666778999999999999998763 1 222444555777
Q ss_pred HHHHhcCC---HHHHHHH----------------------HHHHHHc-C-CCC--CHHHHHHHHHHHHhcCChHHHHHHH
Q 046719 527 DGSCTMGR---IKDAFKF----------------------FDEMVKR-E-MGP--TLVTFNALINGLCKKGRVMEAEDML 577 (808)
Q Consensus 527 ~~~~~~g~---~~~A~~~----------------------~~~~~~~-~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~ 577 (808)
..|.+.+. ..++..+ ++..... + .++ +...|..+..++.. ++.++|+..+
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 77777665 3333333 1111111 1 234 67778888877776 8999999988
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCC
Q 046719 578 PQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVP 656 (808)
Q Consensus 578 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~ 656 (808)
.+.... .|+......+...+...|++++|...|+++... +|+...+..+...+...| .++|.+.+++.++.+ +.
T Consensus 500 ~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~ 574 (987)
T PRK09782 500 LQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LG 574 (987)
T ss_pred HHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Cc
Confidence 888875 466555445555667899999999999998753 455556667777788889 999999999999864 33
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILV 735 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 735 (808)
+...+..+...+.+.|++++|+..+++.++ +.|+...|..++.++.+.|++++|+..++++++ ..| +...+..++
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG 650 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALG 650 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 334444444455567999999999999998 578877999999999999999999999999998 556 567788999
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 736 KGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 736 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.++...|++++|+..++++++..|. ++..+..++.++...|++++|...++++++..|+...
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 9999999999999999999999887 8999999999999999999999999999999987655
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-21 Score=204.74 Aligned_cols=683 Identities=13% Similarity=0.069 Sum_probs=481.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCC-C-CCCH-----HHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHc
Q 046719 102 TNILLSILSSAKLPSEALQLYASTKADG-T-RLSL-----DSINVLLECLVRC-----------NQYDRALDLFDEIVCM 163 (808)
Q Consensus 102 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~-----~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~ 163 (808)
+..+...|...|+.++...++..-.... . ..+. ..++.+...++.. ..+..|..+|+.+-..
T Consensus 44 wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ki 123 (1018)
T KOG2002|consen 44 WIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADKI 123 (1018)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHHh
Confidence 4456777999999999999887665211 0 0111 1233333333222 2344556666655443
Q ss_pred CCCcCHhhHHHHHHHHHhcCC--hHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhC--CCCCCH
Q 046719 164 GFRPDKFTYGKAVQAAVKIGD--LKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQR--KLVPTR 239 (808)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~ 239 (808)
....+...+-. -..|...|+ .+.|...|..+.+..+ +|+-.+---.......|++..|+.+|...... .+.||+
T Consensus 124 ~m~~~~~l~~~-~~~~l~~~~~~~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~ 201 (1018)
T KOG2002|consen 124 DMYEDSHLLVQ-RGFLLLEGDKSMDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV 201 (1018)
T ss_pred hccCcchhhhh-hhhhhhcCCccHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc
Confidence 33222221111 112334444 5899999999988743 46554444444555789999999999996653 344565
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH---HHccCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 046719 240 VTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGG---FCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLF 316 (808)
Q Consensus 240 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 316 (808)
.. .+..++.+.|+.+.|...|++..+..+ .++.++-.|... +.....+..+.+++...-... .-++...+.|.
T Consensus 202 rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LA 277 (1018)
T KOG2002|consen 202 RI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLA 277 (1018)
T ss_pred cc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHH
Confidence 33 334667799999999999999988543 233333333222 223345667777777765543 23778889999
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCC--cChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 046719 317 DGYSKCGDGEGVMALYEELSGRGFR--INSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGD 394 (808)
Q Consensus 317 ~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 394 (808)
+.|...|++..+..+.+.+...... .-...|..+.++|-..|++++|...|.+..+.....-+..+-.+...|.+.|+
T Consensus 278 n~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d 357 (1018)
T KOG2002|consen 278 NHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD 357 (1018)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhch
Confidence 9999999999999999988776421 12345777899999999999999999998886444224455678999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 046719 395 LNRAMLAIQQMENHGLAPNCITFNTLIDKFCELG----EMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQ 470 (808)
Q Consensus 395 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 470 (808)
++.+...|+...+.. +-+..+...|...|...+ ..++|..++.+..+.- +.|...|-.+...+-...-+.. +.
T Consensus 358 le~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~ 434 (1018)
T KOG2002|consen 358 LEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LD 434 (1018)
T ss_pred HHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HH
Confidence 999999999999874 336677777777777665 5678888888877764 3478888888877776554444 66
Q ss_pred HHHHH----HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCcch------hHHHHHHHHHHhcCCHHH
Q 046719 471 ILEEM----ENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENR---GVLPNA------QIYNMLIDGSCTMGRIKD 537 (808)
Q Consensus 471 ~~~~m----~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~---~~~~~~------~~~~~li~~~~~~g~~~~ 537 (808)
.|... ...+-.+.+...|.+.......|.+.+|...|...... ...+|. .+--.+...+-..++.+.
T Consensus 435 ~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~ 514 (1018)
T KOG2002|consen 435 AYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEV 514 (1018)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhH
Confidence 66554 34555678889999999999999999999999988765 122222 233445666667789999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 046719 538 AFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKK 617 (808)
Q Consensus 538 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 617 (808)
|.+.|..+++.. +--+..|..++......+...+|...+....... ..++..+..+...+.+...+..|.+-|..+.+
T Consensus 515 A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 515 AEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILK 592 (1018)
T ss_pred HHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHh
Confidence 999999999862 3245566666645555678899999999988753 34566777777788888888888887777765
Q ss_pred CC-CCcCHHhHHHHHHHHHH------------cC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 046719 618 LG-IKPSLRTYHPLLSGCIR------------EG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSE 683 (808)
Q Consensus 618 ~~-~~p~~~~~~~l~~~~~~------------~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 683 (808)
.- ..+|..+...|.+.|.. .+ .+.|.++|.+.++.+ +.+...-|.+.-+++..|++.+|+.+|.+
T Consensus 593 ~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsq 671 (1018)
T KOG2002|consen 593 KTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQ 671 (1018)
T ss_pred hhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHH
Confidence 42 23567777667665532 23 678889999988864 56778888888899999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC
Q 046719 684 MVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVK-GLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPS 762 (808)
Q Consensus 684 ~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 762 (808)
..+.. .-+..+|..++.+|..+|++..|++.|+...++ +...+..+...|+.++.+.|++.+|.+++..+....|. +
T Consensus 672 VrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~-~ 749 (1018)
T KOG2002|consen 672 VREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS-N 749 (1018)
T ss_pred HHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc-c
Confidence 99863 334557889999999999999999999997654 33346788889999999999999999999999988776 4
Q ss_pred HHHHHHHHHHH-------------------HhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 763 FCIYNELTNGL-------------------KQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 763 ~~~~~~l~~~l-------------------~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+.....++..+ ...+..++|.++|..+...+..-++
T Consensus 750 ~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~r~~ 804 (1018)
T KOG2002|consen 750 TSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDKRIS 804 (1018)
T ss_pred chHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 44443333322 2234667888888888887766333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-22 Score=206.58 Aligned_cols=666 Identities=13% Similarity=0.087 Sum_probs=469.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcCHh-hHHHHHHHHHhcC------
Q 046719 117 EALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCM------GFRPDKF-TYGKAVQAAVKIG------ 183 (808)
Q Consensus 117 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~-~~~~l~~~~~~~g------ 183 (808)
++-+++.-+...+. -.++|..+...|.+.|..++.+.+++..... ++..+.. .++.+...++..+
T Consensus 26 D~~ev~~IL~~e~a--~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~ 103 (1018)
T KOG2002|consen 26 DATEVLSILKAEQA--PLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKK 103 (1018)
T ss_pred ChHHHHHHHHHhcC--chhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555555555443 3567999999999999999999999887621 1111111 2222222232221
Q ss_pred -----ChHHHHHHHHHhhhCCCCCCh-hhHHHHHHHHHccCC--HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 046719 184 -----DLKRACEIFDGMEKSRTRPNV-FVYNVLISGFCKEKK--IRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEF 255 (808)
Q Consensus 184 -----~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 255 (808)
.+..|..+|...-+-....+. .++... .|...|+ ++.|.+.|....+..+ +|+..+-.-.......|++
T Consensus 104 ~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~--~~l~~~~~~~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY 180 (1018)
T KOG2002|consen 104 DEKDELFDKATLLFDLADKIDMYEDSHLLVQRG--FLLLEGDKSMDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDY 180 (1018)
T ss_pred chhHHHHHHHHHHhhHHHHhhccCcchhhhhhh--hhhhcCCccHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccH
Confidence 233455566555443222111 111111 1223343 5899999999987632 3444433333444567899
Q ss_pred hHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhC---CChHHHHHH
Q 046719 256 EKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDP-DGFTYSMLFDGYSKC---GDGEGVMAL 331 (808)
Q Consensus 256 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~---g~~~~a~~~ 331 (808)
-.|..+|.......+..-....-.+...|.+.|+.+.|+..|.+..+. .| ++.++..|.-.-... ..+..+.++
T Consensus 181 ~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~l 258 (1018)
T KOG2002|consen 181 RGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQL 258 (1018)
T ss_pred HHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 999999999776533222222333446677999999999999999986 34 233333333322223 345566666
Q ss_pred HHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 046719 332 YEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVP--DEVMFNTIVSGYCRTGDLNRAMLAIQQMENHG 409 (808)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 409 (808)
+...-..+ ..|+++.+.|.+.|.-.|++..+..+...+....... -...|-.+.++|-..|++++|...|.+.....
T Consensus 259 l~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 259 LQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred HHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 66665543 3477889999999999999999999999888753211 13357789999999999999999998887754
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCHh
Q 046719 410 LAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMG----HFDKCFQILEEMENSGMKPNVV 485 (808)
Q Consensus 410 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~m~~~~~~~~~~ 485 (808)
..--...+..|...+...|+++.+...|+...+... -+..+...|...|...+ ..+.|..++.+.... .+.|..
T Consensus 338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~ 415 (1018)
T KOG2002|consen 338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSE 415 (1018)
T ss_pred CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHH
Confidence 332244566788999999999999999999988732 25677777777777765 567788888777665 356778
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH----
Q 046719 486 SYGSLINWLCKDCKLLEAEIVLKDM----ENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR---EMGPTL---- 554 (808)
Q Consensus 486 ~~~~ll~~~~~~~~~~~A~~~~~~m----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~---- 554 (808)
.|..+...+.....+.. +..+... ...+-.+.+...|.+.......|+++.|...|+..... ...++.
T Consensus 416 a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 416 AWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 88888777776655554 6666544 34455577889999999999999999999999988765 112222
Q ss_pred --HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 046719 555 --VTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDV-ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLL 631 (808)
Q Consensus 555 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 631 (808)
.+--.+...+-..++.+.|.++|..+++. .|.. ..|.-+...-...+...+|...++..... ...++..+..+.
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G 571 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLG 571 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHH
Confidence 22334555666778999999999999986 3543 34544443334467888999999998864 344555555555
Q ss_pred HHHHHcC-HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHc------------cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 046719 632 SGCIREG-IVAVEKLFNEMLQI-NLVPDLLVYNALIHCYAE------------HGDVQKALVLHSEMVDQGIRPDKMTYN 697 (808)
Q Consensus 632 ~~~~~~~-~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~g~~pd~~~~~ 697 (808)
..+.+.. +.-|.+-|+...+. ...+|..+..+|.+.|.+ .+..+.|+++|.+.+.. -+-|...-|
T Consensus 572 ~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dpkN~yAAN 650 (1018)
T KOG2002|consen 572 NLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN-DPKNMYAAN 650 (1018)
T ss_pred HHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-Ccchhhhcc
Confidence 5666666 77777777766653 223677777777776542 34678899999999885 234777889
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhc
Q 046719 698 SLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFE-NGFIPSFCIYNELTNGLKQE 776 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~ 776 (808)
.++-++...|++.+|..+|.+..+.. ..+..+|..++.+|..+|+|..|++.|+...+ .....++.+...|++++++.
T Consensus 651 GIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~ 729 (1018)
T KOG2002|consen 651 GIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA 729 (1018)
T ss_pred chhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998753 34677899999999999999999999999887 56676899999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCc
Q 046719 777 GKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 777 g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
|++.+|..++..+....|.+..
T Consensus 730 ~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 730 GKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred hhHHHHHHHHHHHHHhCCccch
Confidence 9999999999999999998776
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=215.56 Aligned_cols=451 Identities=14% Similarity=0.104 Sum_probs=219.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 046719 312 YSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCR 391 (808)
Q Consensus 312 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 391 (808)
...|.+-..+.|++++|++....+-..+.. +....-.+-..+.+..+.+....--...++.... -..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHHH
Confidence 445555666666666666655554443221 1122222223344444444444433333333222 33455555566656
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHHH
Q 046719 392 TGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTN-NTLIDGYGRMGHFDKCFQ 470 (808)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~ 470 (808)
.|++++|+.+++.+.+.... ....|..+..++...|+.+.|.+.|.+.++. .|+.... +.+....-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 66666666666666554322 4455555555566666666666655555543 3332222 222223333555555555
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 046719 471 ILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREM 550 (808)
Q Consensus 471 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 550 (808)
.+.+..+.. +--.+.|+.|...+-.+|+...|+..|++....+.. -...|-.|...|...+.+++|+..|.+.....
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 555554431 122344555555555555555555555555543211 22345555555555555555555555554431
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC-HHhHH
Q 046719 551 GPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPD-VITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS-LRTYH 628 (808)
Q Consensus 551 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 628 (808)
+....++..+...|...|.++-|+..+++.++. .|+ ...|+.|..++...|++.+|...|++.... .|+ ..+.+
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~ 358 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMN 358 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHH
Confidence 112444444444555555555555555555542 232 345555555555555555555555555542 222 34445
Q ss_pred HHHHHHHHcC-HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh
Q 046719 629 PLLSGCIREG-IVAVEKLFNEMLQINLVPD-LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLR 705 (808)
Q Consensus 629 ~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~ 705 (808)
.|...+...| +++|..+|.+..+. .|. ...++.|...|-..|++++|+..|++.+. +.|+.. .|+.++..|..
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHH
Confidence 5555555555 55555555555542 222 23445555555555555555555555554 444433 45555555555
Q ss_pred cCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 046719 706 EGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKE 781 (808)
Q Consensus 706 ~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 781 (808)
.|+.+.|++.+.+++. +.|. ...++.|+..|...|+..+|+..|+++++..|+ .+..+..++.++.--.+|.+
T Consensus 435 ~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD-fpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD-FPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC-CchhhhHHHHHHHHHhcccc
Confidence 5555555555555544 3443 334445555555555555555555555544333 34444444444433333333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-23 Score=204.81 Aligned_cols=434 Identities=16% Similarity=0.148 Sum_probs=361.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046719 347 CSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCE 426 (808)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 426 (808)
...|.+-..+.|++++|++--...-.++.. +....-.+-.++.+..+.++...--....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 344677777899999999876665554332 33333444556667777777666555555543 3367899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhcCCHHHHHH
Q 046719 427 LGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYG-SLINWLCKDCKLLEAEI 505 (808)
Q Consensus 427 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~A~~ 505 (808)
.|+++.|+.+++.+++...+ .+..|..+..++...|+.+.|.+.|.+..+. .|+..... .+...+-..|+..+|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999999987433 6788999999999999999999999998774 56544433 34445556899999999
Q ss_pred HHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 046719 506 VLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPT-LVTFNALINGLCKKGRVMEAEDMLPQITSSG 584 (808)
Q Consensus 506 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 584 (808)
-+-+..+... --...|+.|.-.+-..|+...|+..|++.++. .|+ ...|-.|...|...+.++.|...+.+....
T Consensus 206 cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l- 281 (966)
T KOG4626|consen 206 CYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL- 281 (966)
T ss_pred HHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 9888877532 24567999999999999999999999999875 444 778999999999999999999999998874
Q ss_pred CCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHH
Q 046719 585 LNPD-VITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS-LRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVY 661 (808)
Q Consensus 585 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~ 661 (808)
.|+ ...+..+...|..+|..+-|+..|++.++ +.|+ ...|+.|..++-..| +.+|...|.+.+... +.-....
T Consensus 282 -rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 282 -RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred -CCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 454 57788888899999999999999999997 4677 788999999999999 999999999999863 3445678
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 046719 662 NALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYC 739 (808)
Q Consensus 662 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~ 739 (808)
+.|..+|.+.|.+++|..+|....+ +.|+.. .++.|+..|.++|++++|+..++++++ +.|+ ...++.++..|.
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 8899999999999999999999998 677765 899999999999999999999999998 8897 578999999999
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 740 NLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 740 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.+|+.++|+..|.+++..+|. =.+.++.|+..|...|+..+|+.-+++.++..|+...
T Consensus 434 e~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred HhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 999999999999999987655 5788999999999999999999999999999998665
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-19 Score=198.12 Aligned_cols=253 Identities=16% Similarity=0.117 Sum_probs=131.4
Q ss_pred CCHHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHH
Q 046719 533 GRIKDAFKFFDEMVKRE-M-GPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPD-VITYNSLISGYSSLGSSQKCL 609 (808)
Q Consensus 533 g~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 609 (808)
+++++|++.|+..+..+ . +.....++.+...+...|++++|+..+++.++. .|+ ...|..+...+...|++++|+
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 45555555555555432 1 112334455555555555555555555555543 222 334555555555555555665
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 046719 610 ELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQG 688 (808)
Q Consensus 610 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 688 (808)
..|+++.+.. +.+...+..+...+...| +++|.+.|++.++.. +.+...+..++.++.+.|++++|+..|++.++.
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 5555555431 223444555555555555 555666665555532 223444555555666666666666666666552
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-H-------HHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 689 IRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA-D-------TYNILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 689 ~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
.| +...++.++.++...|++++|++.++++++ +.|+. . .+...+..+...|++++|..+++++++.++
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p 539 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP 539 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 23 334555666666666666666666666555 22210 0 011111122234666666666666665544
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 046719 760 IPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 760 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 794 (808)
. +...+..+++++.+.|++++|+.+++++.+..+
T Consensus 540 ~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 540 E-CDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred C-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 3 444555666666666666666666666655443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-16 Score=156.02 Aligned_cols=607 Identities=12% Similarity=0.049 Sum_probs=297.5
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 046719 115 PSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDG 194 (808)
Q Consensus 115 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (808)
...|.-++..+.+.++ ..+..|.+-.+.--..|++..|..+..+-.+..+. +...|...+ +....+.|..+...
T Consensus 267 ikKaR~llKSvretnP-~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cpr-SeDvWLeai----RLhp~d~aK~vvA~ 340 (913)
T KOG0495|consen 267 IKKARLLLKSVRETNP-KHPPGWIASARLEEVAGKLSVARNLIMKGCEECPR-SEDVWLEAI----RLHPPDVAKTVVAN 340 (913)
T ss_pred HHHHHHHHHHHHhcCC-CCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCc-hHHHHHHHH----hcCChHHHHHHHHH
Confidence 4455555555555443 23344555555555566666666655554443332 444444433 33345556666666
Q ss_pred hhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC
Q 046719 195 MEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTR-VTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVS 273 (808)
Q Consensus 195 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 273 (808)
.++.- +.++..|---.+. ..+...=.+++++.++. .|+. ..| .+.+...+.+.|.-++.+..+. ++.+
T Consensus 341 Avr~~-P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~--iP~sv~LW----KaAVelE~~~darilL~rAvec-cp~s 409 (913)
T KOG0495|consen 341 AVRFL-PTSVRLWLKAADL---ESDTKNKKRVLRKALEH--IPRSVRLW----KAAVELEEPEDARILLERAVEC-CPQS 409 (913)
T ss_pred HHHhC-CCChhhhhhHHhh---hhHHHHHHHHHHHHHHh--CCchHHHH----HHHHhccChHHHHHHHHHHHHh-ccch
Confidence 55532 1123233222211 12233334555555554 2333 223 2333344555566666666553 2223
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHH----HhCCCCcChhcHHH
Q 046719 274 LVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEEL----SGRGFRINSYTCSI 349 (808)
Q Consensus 274 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~ 349 (808)
...|. +|.+..-|+.|..++....+. ++.+...|.+-...--..|+.+.+.++..+- ...|+..+...|..
T Consensus 410 ~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 410 MDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 33333 344455566666666666553 4445556655555555556555555554432 23444444444444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 350 LLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGE 429 (808)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 429 (808)
=...+-+.|.+-....+....+.-|+.-.. -..||+.-...|.+.+.
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEeed---------------------------------~~~tw~~da~~~~k~~~ 531 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEEED---------------------------------RKSTWLDDAQSCEKRPA 531 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhccccch---------------------------------hHhHHhhhHHHHHhcch
Confidence 444444444444444444444443332110 11244444444444444
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 046719 430 MDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKD 509 (808)
Q Consensus 430 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 509 (808)
++-|+.+|...++- ++.+...|...+..--..|..++-..+|++.... ++.....|......+-..|+...|..++..
T Consensus 532 ~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~ 609 (913)
T KOG0495|consen 532 IECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQ 609 (913)
T ss_pred HHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 44444444444432 1123334444443333444444444444444443 233333344444444444555555555555
Q ss_pred HHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-
Q 046719 510 MENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPD- 588 (808)
Q Consensus 510 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 588 (808)
..+.... +..+|-.-+.......+++.|..+|.+.... .|+..+|.--+....-.++.++|.+++++.++. .|+
T Consensus 610 af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f 684 (913)
T KOG0495|consen 610 AFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDF 684 (913)
T ss_pred HHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCch
Confidence 4444222 4444555555555555555555555544432 334444444444444445555555555555443 222
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 589 VITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHC 667 (808)
Q Consensus 589 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 667 (808)
...|..+...+-+.++.+.|.+.|..-.+. ++-....|..|...-.+.| +-.|..++++..-++ +.+...|-..|.+
T Consensus 685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ 762 (913)
T KOG0495|consen 685 HKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRM 762 (913)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHH
Confidence 234555555555555555555555544432 2222223333333333344 555555555555443 4455666666666
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHH
Q 046719 668 YAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 668 ~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 747 (808)
-.+.|+.+.|..+..++++. ++.+...|..-|+...+.++-......+++ .+-|+.....++..+....++++|
T Consensus 763 ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~ka 836 (913)
T KOG0495|consen 763 ELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKA 836 (913)
T ss_pred HHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHH
Confidence 66777777777766666654 344445666666666666655555444444 344555666666666666677777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 748 YIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
.++|.++++.+++ .-.+|.-+...+.+.|.-++-..++++...-
T Consensus 837 r~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 837 REWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 7777777766555 5556666666666666555555555554443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-16 Score=167.41 Aligned_cols=648 Identities=15% Similarity=0.072 Sum_probs=377.4
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHH
Q 046719 109 LSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRA 188 (808)
Q Consensus 109 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 188 (808)
+...|++++|.+++.++++..+ .....|-.|..+|-..|+.+.+...+-.+.-..+. |...|..+.....+.|.+++|
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHH
Confidence 5566999999999999988764 46778999999999999999999887666555555 778999999999999999999
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCChhHHHHHHHH
Q 046719 189 CEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTY----NTLVDGYCKVGEFEKVSALRER 264 (808)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~ 264 (808)
.-+|.++++..+ ++....---+..|-+.|+...|...|.++.+..+..|..-. -.+++.+...++.+.|...++.
T Consensus 227 ~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999998754 35555556667788999999999999999887443233323 3345567777888889988888
Q ss_pred HHhC-CCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHH--------------------------HHHH
Q 046719 265 MKRD-KVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYS--------------------------MLFD 317 (808)
Q Consensus 265 ~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--------------------------~ll~ 317 (808)
.... +-..+...++.++..|.+...++.|......+......+|..-|. .+.-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 7763 223455678888888999999999998888877633333332221 1111
Q ss_pred HHHhCCChHHHHHHHHHHHhCC--CCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 046719 318 GYSKCGDGEGVMALYEELSGRG--FRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDL 395 (808)
Q Consensus 318 ~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 395 (808)
++......+....+.......+ +.-+...|..+..+|...|++.+|..+|..+.......+...|--+...|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 2222233333333333333333 22223334444444444444444444444444433333344444444444444444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 046719 396 NRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEM 475 (808)
Q Consensus 396 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 475 (808)
+.|++.|++.....+. +......|...+.+.|+.++|.+.+..+..- |... .
T Consensus 466 e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~----D~~~-----------------------~ 517 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINP----DGRN-----------------------A 517 (895)
T ss_pred HHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCC----Cccc-----------------------h
Confidence 4444444444443211 2233333444444444444444444443210 0000 0
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----------------------CCCcchhHHHHHHHHHHhcC
Q 046719 476 ENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENR----------------------GVLPNAQIYNMLIDGSCTMG 533 (808)
Q Consensus 476 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----------------------~~~~~~~~~~~li~~~~~~g 533 (808)
...+..|+........+.+.+.|+.++-+.+-..|... +..-.......++.+-.+.+
T Consensus 518 e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~ 597 (895)
T KOG2076|consen 518 EACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKAT 597 (895)
T ss_pred hhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccC
Confidence 01112223333333333444444444433322222211 01112223333444444443
Q ss_pred CHHHHHHHH------HHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHH----HHHHHHHHHH
Q 046719 534 RIKDAFKFF------DEMVKREMGPT--LVTFNALINGLCKKGRVMEAEDMLPQITSSGL-NPDVI----TYNSLISGYS 600 (808)
Q Consensus 534 ~~~~A~~~~------~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~----~~~~l~~~~~ 600 (808)
+.....+-. ......+...+ -..+..++..+++.+++++|..+...+..... .-+.. .-...+.+..
T Consensus 598 ~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~ 677 (895)
T KOG2076|consen 598 DDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASL 677 (895)
T ss_pred chHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHH
Confidence 322221111 11111222222 13456677789999999999999998876432 11222 2334555667
Q ss_pred cCCCHHHHHHHHHHHHHC-CC--CcC-HHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 046719 601 SLGSSQKCLELYENMKKL-GI--KPS-LRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQ 675 (808)
Q Consensus 601 ~~g~~~~A~~~~~~~~~~-~~--~p~-~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 675 (808)
..+++..|...++.|+.. +. .|. ...|+...+...+.+ -.--.+++..+.......+...+....+....++.+.
T Consensus 678 ~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~ 757 (895)
T KOG2076|consen 678 YARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFK 757 (895)
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchH
Confidence 899999999999999864 11 222 233443444444444 2222333333333222222344444455667789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHH----------hcCCHhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCC
Q 046719 676 KALVLHSEMVDQGIRPDKMTYNSLI-FGHL----------REGKLSEVKELVNDMKVKGL-IPKADTYNILVKGYCNLKD 743 (808)
Q Consensus 676 ~A~~~~~~~~~~g~~pd~~~~~~l~-~~~~----------~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g~ 743 (808)
-|+..+-++.. ..||....+.++ .++. ++-.+-+++.++++..+... .-....+..++.+|-..|=
T Consensus 758 ~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl 835 (895)
T KOG2076|consen 758 HALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGL 835 (895)
T ss_pred HHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHccc
Confidence 99999988887 467755444322 2222 12224556667766655321 1246788899999999999
Q ss_pred hhHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 046719 744 FGGAYIWYREMFENGFIP-----------SFCIYNELTNGLKQEGKLKEAQILCSEI 789 (808)
Q Consensus 744 ~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 789 (808)
..-|..+|+++++..|.+ -..+-..|.-.|..+|+.+.|.+++++-
T Consensus 836 ~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 836 VHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred HHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence 999999999999764321 1234567778899999999999988763
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-19 Score=197.56 Aligned_cols=333 Identities=10% Similarity=0.015 Sum_probs=194.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 046719 417 FNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCK 496 (808)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 496 (808)
...++..+.+.|++++|..++......... +...+..++......|++++|...++++.... +.+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 344455566667777777777766665333 33444444455556777777777777766542 3345566666666667
Q ss_pred cCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 046719 497 DCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDM 576 (808)
Q Consensus 497 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 576 (808)
.|++++|...++++.... +.+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 777777777777766642 22455566666667777777777776666655422 223333222 235566777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHH----HHHHHHHHHH
Q 046719 577 LPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVA----VEKLFNEMLQ 651 (808)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~----a~~~~~~~~~ 651 (808)
++.+.+....++...+..+...+...|++++|+..++++.+.. +.+...+..+...+...| +++ |...|+++++
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 6666554322233344444556666677777777777666542 233445555555666666 443 5666666665
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHH
Q 046719 652 INLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADT 730 (808)
Q Consensus 652 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 730 (808)
.. +.+...+..++..+...|++++|+..++++.+. .|+ ...+..++.++.+.|++++|+..++++.+ ..|+...
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~~~ 353 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVTSK 353 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccchH
Confidence 43 334556666666666666666666666666663 343 33555666666666666666666666665 2343322
Q ss_pred -HHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 731 -YNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 731 -~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+..++.++...|++++|...|+++++..|+
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 333455566666666666666666665443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-18 Score=188.34 Aligned_cols=255 Identities=13% Similarity=0.051 Sum_probs=171.7
Q ss_pred cCCHHHHHHHHHHHHhCC-CCc-chhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 046719 497 DCKLLEAEIVLKDMENRG-VLP-NAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAE 574 (808)
Q Consensus 497 ~~~~~~A~~~~~~m~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 574 (808)
.+.+++|...|+...+.+ ..| ....+..+...+...|++++|+..|++.++.. +.+...|..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 355667777777766543 122 33456666666777777777777777777642 223556667777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCC
Q 046719 575 DMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQIN 653 (808)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~ 653 (808)
..|+++++.. +.+...|..+...+...|++++|+..|++..+.. +.+...+..+...+.+.| +++|...|++.++..
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 7777776642 2245667777777777777777777777777642 233555556666667777 777777777777642
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-H-------HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 046719 654 LVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDK-M-------TYNSLIFGHLREGKLSEVKELVNDMKVKGLI 725 (808)
Q Consensus 654 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 725 (808)
+.+...++.+..++...|++++|++.|++.++. .|+. . .++..+..+...|++++|.++++++++ +.
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~ 538 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--ID 538 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cC
Confidence 445677788888888888888888888888873 3321 1 111122233346888888888888877 44
Q ss_pred CC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 726 PK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 726 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
|+ ...+..++.++.+.|++++|+.+|+++.+...
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 54 45677888888888999999888888887643
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-20 Score=193.46 Aligned_cols=262 Identities=15% Similarity=0.093 Sum_probs=146.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC---hhhHHHHHHHHHc
Q 046719 140 LLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPN---VFVYNVLISGFCK 216 (808)
Q Consensus 140 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 216 (808)
....+...|++++|...|.++.+.++. +..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777776443 556677777777777777777777777766432211 2456667777777
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHccCChhH
Q 046719 217 EKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSL----VMFNSLLGGFCKAKRMEE 292 (808)
Q Consensus 217 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~ 292 (808)
.|++++|..+|+++.+.. +++..++..++..+.+.|++++|...++.+.+.+..+.. ..+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 777777777777776642 235666777777777777777777777777665433221 133445555666666666
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046719 293 AKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIE 372 (808)
Q Consensus 293 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (808)
|...|+++.+.. +.+...+..+...+.+.|++++|.+.++++...+......+++.++.+|++.|++++|...++++.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666665542 1123344445555555555555555555554432221122333344444444444444444444433
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046719 373 NGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQME 406 (808)
Q Consensus 373 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 406 (808)
.. |+...+..++..+.+.|++++|..+++++.
T Consensus 278 ~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l 309 (389)
T PRK11788 278 EY--PGADLLLALAQLLEEQEGPEAAQALLREQL 309 (389)
T ss_pred hC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 31 222223334444444444444444444443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-16 Score=162.48 Aligned_cols=637 Identities=13% Similarity=0.057 Sum_probs=409.5
Q ss_pred CCCccHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHH
Q 046719 96 YYKPTFTNILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKA 175 (808)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 175 (808)
|..+..+.+|..+|-..|+.+.+...+-..-... +.|..-|..+.....+.|++++|+-.|.++++..+. +....-.-
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~er 247 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYER 247 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHH
Confidence 4466677889999999999999998875554443 557788999999999999999999999999997665 44444455
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCChhhH----HHHHHHHHccCCHhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 046719 176 VQAAVKIGDLKRACEIFDGMEKSRTRPNVFVY----NVLISGFCKEKKIRDAEKLFDEMCQRK-LVPTRVTYNTLVDGYC 250 (808)
Q Consensus 176 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~ 250 (808)
...|-+.|+...|..-|.++....++.|..-. -.+++.+...++-+.|.+.++.....+ -.-+...++.++..|.
T Consensus 248 s~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l 327 (895)
T KOG2076|consen 248 SSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFL 327 (895)
T ss_pred HHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 66788999999999999999986542222222 234566777788899999998887632 2235567889999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCcCHHHH----------------------H----HHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 251 KVGEFEKVSALRERMKRDKVEVSLVMF----------------------N----SLLGGFCKAKRMEEAKSVCKEMEAHG 304 (808)
Q Consensus 251 ~~g~~~~a~~~~~~~~~~~~~~~~~~~----------------------~----~li~~~~~~g~~~~A~~~~~~m~~~g 304 (808)
+...++.+......+......+|..-| . -+.-++......+....+.....+..
T Consensus 328 ~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n 407 (895)
T KOG2076|consen 328 KNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN 407 (895)
T ss_pred HhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc
Confidence 999999999988888762222222211 1 12233445555555555555556655
Q ss_pred --CCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhH
Q 046719 305 --FDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMF 382 (808)
Q Consensus 305 --~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 382 (808)
+.-++..|.-+..+|...|.+.+|..+|..+.....--+.+.|--+..+|...|..+.|.+.++.++...+. +...-
T Consensus 408 ~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~R 486 (895)
T KOG2076|consen 408 VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDAR 486 (895)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhh
Confidence 333566788999999999999999999999998876667889999999999999999999999999987544 55566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 046719 383 NTIVSGYCRTGDLNRAMLAIQQMEN--------HGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNT 454 (808)
Q Consensus 383 ~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 454 (808)
-+|...+.+.|+.++|.+.++.+.. .+..|+..........+.+.|+.++=..+...|+.. .....
T Consensus 487 i~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~------~~~~~ 560 (895)
T KOG2076|consen 487 ITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDD------FLKKR 560 (895)
T ss_pred hhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------HHHHH
Confidence 7788889999999999999998652 223344444445556666777777655555555432 11111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH------HHHHHHhCCCCcc-h-hHHHHHH
Q 046719 455 LIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEI------VLKDMENRGVLPN-A-QIYNMLI 526 (808)
Q Consensus 455 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~------~~~~m~~~~~~~~-~-~~~~~li 526 (808)
++- - +..++... .....+.+-.......++.+-.+.++...... .+..-..+|...+ . ..+.-++
T Consensus 561 ~~f--~---~~~k~r~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i 633 (895)
T KOG2076|consen 561 YIF--P---RNKKKRRR--AIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELI 633 (895)
T ss_pred Hhc--c---hHHHHHHH--hhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHH
Confidence 110 0 00000000 00000111122222233333333332211111 1111112222222 2 2456677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 046719 527 DGSCTMGRIKDAFKFFDEMVKRE-MGPTLV----TFNALINGLCKKGRVMEAEDMLPQITSS-GLNPD---VITYNSLIS 597 (808)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~---~~~~~~l~~ 597 (808)
..+++.+++++|+.+...+.... +.-+.. .-...+.+.+..+++..|...++.|... +...+ ...||...+
T Consensus 634 ~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s 713 (895)
T KOG2076|consen 634 LSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFS 713 (895)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 78899999999999988887652 111222 1233455667888999999999988763 22222 346776666
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH--HHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHH----
Q 046719 598 GYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSG--CIREG-IVAVEKLFNEMLQINLVPDLLVYNAL-IHCYA---- 669 (808)
Q Consensus 598 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~---- 669 (808)
.+.+.++-.--.+++...... +|+......++.+ ....+ +..|...+-..... .||....+.+ +-++.
T Consensus 714 ~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl~lglafih~a~ 789 (895)
T KOG2076|consen 714 YFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINLCLGLAFIHLAL 789 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--CccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHHHH
Confidence 666666655444444444332 3333222222222 34445 88888877777764 3553333322 22221
Q ss_pred ------ccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC---------C----HH
Q 046719 670 ------EHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP---------K----AD 729 (808)
Q Consensus 670 ------~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---------~----~~ 729 (808)
++-.+-.++.++.+..+....- -..++..++.+|-..|-..-|..++++.++ +.| + ..
T Consensus 790 qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~--~~p~~~~~~~~d~~dLrke 867 (895)
T KOG2076|consen 790 QRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE--VSPKDVTDPKEDNYDLRKE 867 (895)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC--CCccccccccCCcccHHHH
Confidence 2223556777777777643221 234777899999999999999999999987 322 1 22
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHH
Q 046719 730 TYNILVKGYCNLKDFGGAYIWYREM 754 (808)
Q Consensus 730 ~~~~l~~~~~~~g~~~~A~~~~~~~ 754 (808)
.-..|.-.|...|+...|.+++++-
T Consensus 868 AA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 868 AAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred HHhhhhhhhccCCcHHHHHHHHHhh
Confidence 3345566789999999999988763
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-19 Score=190.10 Aligned_cols=298 Identities=13% Similarity=0.063 Sum_probs=154.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc---hhHHHHHHHHHHhcCCHH
Q 046719 460 GRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPN---AQIYNMLIDGSCTMGRIK 536 (808)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~ 536 (808)
...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..+...|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34445555555555554431 22333444444455555555555555555444321111 123455555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHH
Q 046719 537 DAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDV----ITYNSLISGYSSLGSSQKCLELY 612 (808)
Q Consensus 537 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~ 612 (808)
+|..+|+++.+. .+.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..|..++..+...|++++|...|
T Consensus 125 ~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 555555555543 1234455555555555556666666555555543322111 12334445555556666666666
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 046719 613 ENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP 691 (808)
Q Consensus 613 ~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 691 (808)
+++.+.. +.+...+..+...+.+.| +++|.+.++++.+.+.......++.++.+|.+.|++++|.+.++++.+. .|
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 6655431 122334444444455555 5555555555554321112344555666666666666666666666652 45
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCChhHHHHHHHHHHHCCCCCCHH
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCN---LKDFGGAYIWYREMFENGFIPSFC 764 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 764 (808)
+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..++. .|+.++|+.+++++++.++.|++.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 555556666666666666666666666665 34665565555555443 346666666666666654444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-18 Score=192.07 Aligned_cols=419 Identities=11% Similarity=0.004 Sum_probs=228.9
Q ss_pred hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 344 SYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDK 423 (808)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 423 (808)
.......+....-.|+.++|++++.+..... ..+...+..+...+.+.|++++|..++++..+... .+...+..+...
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~ 92 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3333444445555566666666665555421 11333455555566666666666666666555422 134445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 046719 424 FCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEA 503 (808)
Q Consensus 424 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A 503 (808)
+...|++++|+..++++.+... .+.. +..+...+...|+.++|+..++++.... +.+...+..+...+...+..++|
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHH
Confidence 5566666666666666555421 1333 5555555555666666666666655531 22344444445555555555555
Q ss_pred HHHHHHHHhCCCCcch------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---HHHH
Q 046719 504 EIVLKDMENRGVLPNA------QIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRV---MEAE 574 (808)
Q Consensus 504 ~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~ 574 (808)
+..++.... .|+. .....++......+ ....+++ ++|+
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~------------------------------~~~~~r~~~ad~Al 216 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT------------------------------RSEKERYAIADRAL 216 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc------------------------------cChhHHHHHHHHHH
Confidence 555544332 1110 00011111110000 0111122 4455
Q ss_pred HHHHHHHhC-CCCCCHH-HH----HHHHHHHHcCCCHHHHHHHHHHHHHCCCC-cCHHhHHHHHHHHHHcC-HHHHHHHH
Q 046719 575 DMLPQITSS-GLNPDVI-TY----NSLISGYSSLGSSQKCLELYENMKKLGIK-PSLRTYHPLLSGCIREG-IVAVEKLF 646 (808)
Q Consensus 575 ~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~-~~~a~~~~ 646 (808)
+.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+++.+.+.+ |+. ....+...+...| +++|...|
T Consensus 217 ~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 217 AQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHH
Confidence 555555532 1112111 00 11122233445666666666666554311 221 1111234455555 66666666
Q ss_pred HHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHHhcCCH
Q 046719 647 NEMLQINLVP---DLLVYNALIHCYAEHGDVQKALVLHSEMVDQG-----------IRPDK---MTYNSLIFGHLREGKL 709 (808)
Q Consensus 647 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-----------~~pd~---~~~~~l~~~~~~~g~~ 709 (808)
+++++..... .......+..++.+.|++++|.++++++.+.. -.|+. ..+..++..+...|++
T Consensus 296 ~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~ 375 (765)
T PRK10049 296 TELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL 375 (765)
T ss_pred HHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence 6655432111 12344555666777788888888888777631 01221 2445677788888888
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 046719 710 SEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSE 788 (808)
Q Consensus 710 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~ 788 (808)
++|++.++++... .| +...+..++..+...|++++|++.++++++..|. +...+..++..+...|++++|..++++
T Consensus 376 ~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 376 PQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8888888888773 44 5677788888888888888888888888887665 677788888888888888888888888
Q ss_pred HHHcCCCCCchhhhHh
Q 046719 789 ISIVGKDAWTNEDQSA 804 (808)
Q Consensus 789 ~~~~~~~~~~~~~~~~ 804 (808)
+++..|++.....+.+
T Consensus 453 ll~~~Pd~~~~~~~~~ 468 (765)
T PRK10049 453 VVAREPQDPGVQRLAR 468 (765)
T ss_pred HHHhCCCCHHHHHHHH
Confidence 8888888877444443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-14 Score=146.12 Aligned_cols=579 Identities=11% Similarity=0.020 Sum_probs=343.1
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHH
Q 046719 110 SSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRAC 189 (808)
Q Consensus 110 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 189 (808)
-..|++..|..+...=.+. ++.+...|..-+ +....+.|..+...+++..+. ++..|......- .+...=.
T Consensus 296 EvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~vvA~Avr~~P~-Sv~lW~kA~dLE---~~~~~K~ 366 (913)
T KOG0495|consen 296 EVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTVVANAVRFLPT-SVRLWLKAADLE---SDTKNKK 366 (913)
T ss_pred HHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHHHHHHHHhCCC-ChhhhhhHHhhh---hHHHHHH
Confidence 4566777777665444333 355666675544 344677788888888876554 666665544432 2344456
Q ss_pred HHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046719 190 EIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDK 269 (808)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 269 (808)
+++++.++. ++.++..|...+ ...+.++|+-++.+.++. ++.... |..+|.+..-++.|..++....+.
T Consensus 367 RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~- 435 (913)
T KOG0495|consen 367 RVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREI- 435 (913)
T ss_pred HHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 778887775 344666776655 345667799999998875 222333 445567777889999999988875
Q ss_pred CCcCHHHHHHHHHHHHccCChhHHHHHHHHH----HHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcC--
Q 046719 270 VEVSLVMFNSLLGGFCKAKRMEEAKSVCKEM----EAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRIN-- 343 (808)
Q Consensus 270 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 343 (808)
++.+...|.+....--..|+.+....+.++- ...|+..+...|..=...|-..|..-.+..+...++..|+...
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 6678888888777777889999988888765 3467888888888878888888888888888888877776532
Q ss_pred hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 344 SYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDK 423 (808)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 423 (808)
-.+|..-...|.+.+.++-|+.+|...++.-+. +...|...+..--..|..+.-..+|++.... ++-....|......
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 246666666677777777777777666654222 4455655555555566666666666666654 22244455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 046719 424 FCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEA 503 (808)
Q Consensus 424 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A 503 (808)
+...|++..|+.++..+.+.... +...|-.-+.......+++.|..+|.+.... .|+...|
T Consensus 594 ~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~---------------- 654 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVW---------------- 654 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhh----------------
Confidence 55566666666666665554322 4455555555555555666666665554432 3344444
Q ss_pred HHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046719 504 EIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSS 583 (808)
Q Consensus 504 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 583 (808)
.--+....-.++.++|++++++.++. ++.-...|..+...+-+.++++.|.+.|..-.+.
T Consensus 655 -------------------mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 655 -------------------MKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK 714 (913)
T ss_pred -------------------HHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence 33334444444555555555555443 2222344444455555555555555544443332
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHH
Q 046719 584 GLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYN 662 (808)
Q Consensus 584 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 662 (808)
++..+..|..|...--+.|.+-.|..+++.....+ +.+...|...|..-.+.| .+.|..+..+.++. ++.+...|.
T Consensus 715 -cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWa 791 (913)
T KOG0495|consen 715 -CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWA 791 (913)
T ss_pred -CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHH
Confidence 22233445555554455555555555555554432 233444555555555555 55555555554443 344455566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcc
Q 046719 663 ALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNL 741 (808)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~ 741 (808)
.-|....+.++-......+++ ..-|......++..+....++++|.+.|.+.++ +.|| -.+|..+...+.+.
T Consensus 792 EaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~h 864 (913)
T KOG0495|consen 792 EAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRH 864 (913)
T ss_pred HHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHh
Confidence 666665555554433333332 233555555666666666667777777777766 3343 45566666666667
Q ss_pred CChhHHHHHHHHHHHCCC
Q 046719 742 KDFGGAYIWYREMFENGF 759 (808)
Q Consensus 742 g~~~~A~~~~~~~~~~~~ 759 (808)
|.-+.-.+++.+.....|
T Consensus 865 G~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 865 GTEEDQKEVLKKCETAEP 882 (913)
T ss_pred CCHHHHHHHHHHHhccCC
Confidence 766666666666665433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-17 Score=185.47 Aligned_cols=330 Identities=10% Similarity=0.022 Sum_probs=262.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCC
Q 046719 105 LLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGD 184 (808)
Q Consensus 105 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 184 (808)
++..+.+.|++++|+.++.......+ .+...+..++.++...|++++|...|++++...+. +...+..+...+.+.|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCC
Confidence 45667889999999999998887654 35666777778888899999999999999987665 67788888899999999
Q ss_pred hHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 046719 185 LKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRER 264 (808)
Q Consensus 185 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 264 (808)
+++|...|+++.+..+ .+...+..+...+...|++++|...++.+...... +...+..+ ..+.+.|++++|..+++.
T Consensus 126 ~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 9999999999988643 36778888999999999999999999988766433 23333333 347889999999999999
Q ss_pred HHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHH----HHHHHHHHHhCCC
Q 046719 265 MKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEG----VMALYEELSGRGF 340 (808)
Q Consensus 265 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~ 340 (808)
+......++...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++ |...|+++.....
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 8776544455556666778889999999999999998764 2356778888899999999885 7888998887643
Q ss_pred CcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046719 341 RINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTL 420 (808)
Q Consensus 341 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 420 (808)
.+..++..+...+.+.|++++|...+++.++..+. +...+..+...|.+.|++++|+..|+++...+.. +...+..+
T Consensus 282 -~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~ 358 (656)
T PRK15174 282 -DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYA 358 (656)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHH
Confidence 35677888888899999999999999998886544 4566777888899999999999999988876432 23334445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 046719 421 IDKFCELGEMDKAEEWVKRMLEK 443 (808)
Q Consensus 421 i~~~~~~g~~~~A~~~~~~~~~~ 443 (808)
...+...|+.++|...|++..+.
T Consensus 359 a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 66788899999999999988876
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-16 Score=172.92 Aligned_cols=445 Identities=12% Similarity=0.035 Sum_probs=232.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 046719 315 LFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGD 394 (808)
Q Consensus 315 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 394 (808)
-+-...+.|+++.|+..|+++.+........++ .++..+...|+.++|+..+++...... .+......+...|...|+
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n-~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMN-ISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCC
Confidence 344456778888888888888776433222233 677777777888888888887773211 122223333557777788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 046719 395 LNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEE 474 (808)
Q Consensus 395 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 474 (808)
+++|+++|+++.+.... +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.+++
T Consensus 118 yd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 88888888888876544 4566667777778888888888888887765 44455554444444445666568888888
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHH------HHHHHHHH-h----cC---CHHHHHH
Q 046719 475 MENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIY------NMLIDGSC-T----MG---RIKDAFK 540 (808)
Q Consensus 475 m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~------~~li~~~~-~----~g---~~~~A~~ 540 (808)
+.+.. +.+...+..+...+.+.|-...|.++..+-.+. +.+....+ ..+++.-. . .+ -.+.|+.
T Consensus 195 ll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 195 AVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 87762 446667777777777777777777655543221 11111111 11111110 0 01 1233444
Q ss_pred HHHHHHHc-CCCCC-HH----HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 046719 541 FFDEMVKR-EMGPT-LV----TFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYEN 614 (808)
Q Consensus 541 ~~~~~~~~-~~~~~-~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 614 (808)
-++.+... +..|. .. +..-.+-++...|++.++++.++.+...+.+....+-..+.++|...+++++|..+|++
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 44444432 11121 11 11223335555666666666666666555433334555566666666666666666666
Q ss_pred HHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----
Q 046719 615 MKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGI----- 689 (808)
Q Consensus 615 ~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~----- 689 (808)
+.....++. ..+++......|..+|...+++++|..+++++.+..-
T Consensus 353 ~~~~~~~~~-----------------------------~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~ 403 (822)
T PRK14574 353 LYYSDGKTF-----------------------------RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGV 403 (822)
T ss_pred Hhhcccccc-----------------------------CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEec
Confidence 644310000 0011222233444444444555555555444444100
Q ss_pred ------CC--CHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 690 ------RP--DKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 690 ------~p--d~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
.| |-. .+..++..+.-.|++.+|.+.++++.. ..| |......++..+...|...+|..+++.+....|
T Consensus 404 ~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P 481 (822)
T PRK14574 404 YGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAP 481 (822)
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Confidence 01 111 122334444445555555555555544 223 444444555555555555555555544444433
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 760 IPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 760 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
. +.......+..+...|+|++|..+.+++....|++..
T Consensus 482 ~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 482 R-SLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred c-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 3 4444444455555555555555555555554444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-17 Score=183.70 Aligned_cols=419 Identities=10% Similarity=0.040 Sum_probs=283.3
Q ss_pred CCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 046719 307 PDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIV 386 (808)
Q Consensus 307 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 386 (808)
.+.....-.+......|+.++|++++.+..... +.+...+..+...+.+.|++++|.+++++.++..+. +...+..++
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 355566677888899999999999999998632 334556888999999999999999999999887443 566778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 046719 387 SGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFD 466 (808)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 466 (808)
..+...|++++|+..+++..+.... +.. +..+...+...|+.++|+..++++.+.... +...+..+...+...+..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChH
Confidence 9999999999999999999987433 556 888899999999999999999999987443 5666677888888999999
Q ss_pred HHHHHHHHHHHCCCCCCH------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCcchh-HH----HHHH
Q 046719 467 KCFQILEEMENSGMKPNV------VSYGSLINWLC-----KDCKL---LEAEIVLKDMENR-GVLPNAQ-IY----NMLI 526 (808)
Q Consensus 467 ~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~-----~~~~~---~~A~~~~~~m~~~-~~~~~~~-~~----~~li 526 (808)
.|+..++.... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+ ...+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 99999887653 2221 01111222111 11223 4566666666543 1112111 11 1112
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcC
Q 046719 527 DGSCTMGRIKDAFKFFDEMVKREMG-PTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNP---DVITYNSLISGYSSL 602 (808)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 602 (808)
..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+++.+..... ....+..+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 2334556666666666666655321 221 11223555666666666666666665432110 122344444455666
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHH
Q 046719 603 GSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPD---LLVYNALIHCYAEHGDVQKALV 679 (808)
Q Consensus 603 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~ 679 (808)
|++++|...++++.+.. ++....+.. ....|+ ...+..++..+...|++++|++
T Consensus 324 g~~~eA~~~l~~~~~~~-P~~~~~~~~----------------------~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 324 ENYPGALTVTAHTINNS-PPFLRLYGS----------------------PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred ccHHHHHHHHHHHhhcC-CceEeecCC----------------------CCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666665431 111110000 001233 2345567778889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 680 LHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 680 ~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
.++++.+. .+.+...+..++..+...|++++|++.++++++ +.|+ ...+..++..+...|++++|...++++++..
T Consensus 381 ~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 381 RARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999884 233555888999999999999999999999988 5675 6667788888999999999999999999875
Q ss_pred CC
Q 046719 759 FI 760 (808)
Q Consensus 759 ~~ 760 (808)
|+
T Consensus 458 Pd 459 (765)
T PRK10049 458 PQ 459 (765)
T ss_pred CC
Confidence 44
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-15 Score=167.96 Aligned_cols=450 Identities=11% Similarity=0.039 Sum_probs=321.5
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHH
Q 046719 276 MFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDG--FTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNA 353 (808)
Q Consensus 276 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 353 (808)
.|...|. ..+.|+++.|+..|++..+. .|+. ..+ .++..+...|+.++|+..+++..... .........+...
T Consensus 37 ~y~~aii-~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~l 111 (822)
T PRK14574 37 QYDSLII-RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARA 111 (822)
T ss_pred HHHHHHH-HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHH
Confidence 4444444 45899999999999999886 4443 244 88889999999999999999998221 1122333333567
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 046719 354 LCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKA 433 (808)
Q Consensus 354 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 433 (808)
+...|++++|+++++++++..+. +...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHH
Confidence 88889999999999999998766 5677778899999999999999999999876 44555555555555556777679
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhH--HHHHHHHHhc---------CC---
Q 046719 434 EEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSY--GSLINWLCKD---------CK--- 499 (808)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~---------~~--- 499 (808)
++.++++.+.... +...+..++....+.|-...|.++..+-... +.+....+ ...+.-..+. .+
T Consensus 189 L~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 189 LQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 9999999988533 6778888899999999999999887764322 12222111 0111111211 12
Q ss_pred HHHHHHHHHHHHhC-CCCcch-hH----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 046719 500 LLEAEIVLKDMENR-GVLPNA-QI----YNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEA 573 (808)
Q Consensus 500 ~~~A~~~~~~m~~~-~~~~~~-~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 573 (808)
.+.|+.-++.+... +..|.. .. ..-.+-++...|+..++++.|+.+...+.+....+-..+.++|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 23345555555542 122322 22 2234557788999999999999999887665567888999999999999999
Q ss_pred HHHHHHHHhCC-----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHHcCHHHHHHHHH
Q 046719 574 EDMLPQITSSG-----LNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS-LRTYHPLLSGCIREGIVAVEKLFN 647 (808)
Q Consensus 574 ~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~a~~~~~ 647 (808)
..+++.+.... ..++......|.-+|...+++++|..+++++.+. .|- ...+..
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~~~------------------ 406 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVYGL------------------ 406 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEeccCC------------------
Confidence 99999997643 1223444678888999999999999999999873 331 000100
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 046719 648 EMLQINLVPDL-LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP 726 (808)
Q Consensus 648 ~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 726 (808)
......||- .....++..+.-.|++.+|.+.++++... -+-|......++..+...|...+|.+.++.+.. +.|
T Consensus 407 --~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P 481 (822)
T PRK14574 407 --PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAP 481 (822)
T ss_pred --CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCC
Confidence 001122332 23344566677889999999999999874 234666888899999999999999999977766 466
Q ss_pred C-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 727 K-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 727 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+ ..+....+.++...|++++|..+.+++.+..|+
T Consensus 482 ~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 482 RSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 4 566678888888899999999999998887655
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-16 Score=151.71 Aligned_cols=495 Identities=16% Similarity=0.117 Sum_probs=325.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhH-HHHHHHHHhcCChHHHHHHHHHhhhCCCCCC----hhhHHH
Q 046719 135 DSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTY-GKAVQAAVKIGDLKRACEIFDGMEKSRTRPN----VFVYNV 209 (808)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ 209 (808)
.++..|...|.....+.+|+..|+-+++...-|+.-.. ..+...+.+.+.+..|+++|+-.+..-+.-+ ....+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 34556777788888999999999988876666665432 2355678889999999999988776422111 123455
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHH--------HHHH
Q 046719 210 LISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMF--------NSLL 281 (808)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--------~~li 281 (808)
+...+.+.|.+++|+..|+...+. .||..+--.|+-++...|+.++..+.|.+|+.....+|..-| ..|+
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 555677899999999999998876 689888778888888899999999999999876444433322 1122
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHhCCCh----HHHHHHHHHHHhCCCCcChhcHHHHHHH
Q 046719 282 GGFCKAKRMEEAKSVCKEMEAHGFDPDGF----TYSMLFDGYSKCGDG----EGVMALYEELSGRGFRINSYTCSILLNA 353 (808)
Q Consensus 282 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 353 (808)
.--.+. ..++.|.+.+- .+.. |-..+|.-. -.-++ +-.++.++.-.-..+..+. -..-..-
T Consensus 360 ~eai~n-------d~lk~~ek~~k-a~aek~i~ta~kiiapv-i~~~fa~g~dwcle~lk~s~~~~la~dl--ei~ka~~ 428 (840)
T KOG2003|consen 360 NEAIKN-------DHLKNMEKENK-ADAEKAIITAAKIIAPV-IAPDFAAGCDWCLESLKASQHAELAIDL--EINKAGE 428 (840)
T ss_pred HHHHhh-------HHHHHHHHhhh-hhHHHHHHHHHHHhccc-cccchhcccHHHHHHHHHhhhhhhhhhh--hhhHHHH
Confidence 211111 12222222110 0110 000000000 00011 1111111111110000000 0112345
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH-HHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 046719 354 LCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVS-GYCR-TGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMD 431 (808)
Q Consensus 354 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 431 (808)
+.++|+++.|++++.-..+.+-+.-...-+.|-. -|.+ -.++.+|...-+......- -+......-.+....+|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHH
Confidence 7789999999999888776533222222222211 2222 2367777776666554321 13333333334445679999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046719 432 KAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDME 511 (808)
Q Consensus 432 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 511 (808)
+|.+.+++.+..........|| +.-.+-..|++++|++.|-++... +..+..+...+.+.|-...+..+|++++.+..
T Consensus 508 ka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 9999999998764332222333 333567789999999999887543 34577788888888888999999999988876
Q ss_pred hCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 046719 512 NRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVIT 591 (808)
Q Consensus 512 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 591 (808)
.. ++.|+.+.+.|.+.|-+.|+-..|.+.+-.--+. ++.+..+...|...|....-+++++.+|++..- +.|+..-
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~k 661 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSK 661 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHH
Confidence 65 5668889999999999999999998887665543 677888999999999999999999999998865 5799999
Q ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHH
Q 046719 592 YNSLISGY-SSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEML 650 (808)
Q Consensus 592 ~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~ 650 (808)
|..|+..| .+.|++++|+++|+...++ ++.|..++..|+..+...|+.++.+.-+++.
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d~key~~kle 720 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKDAKEYADKLE 720 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchhHHHHHHHHH
Confidence 98887755 5789999999999998874 6778888888888888888666666655544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-15 Score=145.67 Aligned_cols=480 Identities=12% Similarity=0.088 Sum_probs=313.1
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhCCChHHHHHHHHHHHhCCCCcChhc----HHH
Q 046719 275 VMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYS-MLFDGYSKCGDGEGVMALYEELSGRGFRINSYT----CSI 349 (808)
Q Consensus 275 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~ 349 (808)
.+...|.+-|.......+|+..|+-+++....|+..... .+.+.+.+..++.+|+++|+..++.-+..+..+ .+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 344455666766777788888888888877777654432 355677888888999998888877643333332 333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------CCHHHH
Q 046719 350 LLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLA------------PNCITF 417 (808)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~ 417 (808)
+.-.+.+.|+++.|+..|+...+. .|+..+-..|+-.+...|+-++..+.|.+|...-.. |+....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 334567889999999999988775 456555545555666789999999999999764322 233333
Q ss_pred HHHHHH-HH---hcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 046719 418 NTLIDK-FC---ELGEMDKAEEWVKRMLE---KGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSL 490 (808)
Q Consensus 418 ~~li~~-~~---~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 490 (808)
+..|.. .. ...+-..|++.+-...+ --+.|+.. . -.+-+++.++.-....+..+.. -.-
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~-g~dwcle~lk~s~~~~la~dle--i~k 425 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------A-GCDWCLESLKASQHAELAIDLE--INK 425 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------c-ccHHHHHHHHHhhhhhhhhhhh--hhH
Confidence 222211 00 00111112222211111 11111110 0 0122233332221111111111 111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 046719 491 INWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSC--TMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKG 568 (808)
Q Consensus 491 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 568 (808)
..-|.++|+++.|+++++-+.+.+-......-+.|-..+. ...++..|..+-+..+..+ ..+......-.+.-..+|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 2357889999999999998877644333333333332222 2446777887777776542 223433333334455689
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHH
Q 046719 569 RVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFN 647 (808)
Q Consensus 569 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~ 647 (808)
++++|.+.+.+.+.....-....||. .-.+...|+.++|++.|-++..- +..+..++..+.+.|.... ...|.+++.
T Consensus 505 d~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 99999999999986432212223332 23456789999999999888652 3456677777777887777 888999988
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 046719 648 EMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK 727 (808)
Q Consensus 648 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 727 (808)
+.... ++.|+.++..|.+.|-+.|+-..|.+.+-.-... ++-+..+...|+.-|....-+++|+.+|+++.- +.|+
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~ 658 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN 658 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence 87764 5678899999999999999999999987666553 556778888899999999889999999999866 8999
Q ss_pred HHHHHHHH-HHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 728 ADTYNILV-KGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGK 778 (808)
Q Consensus 728 ~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 778 (808)
..-|..++ +++.+.|++.+|+.+|+.....-|. |..++..|++.....|-
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe-dldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE-DLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc-chHHHHHHHHHhccccc
Confidence 99998665 4556799999999999999887666 99999999998887774
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-14 Score=137.98 Aligned_cols=447 Identities=16% Similarity=0.228 Sum_probs=281.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcC--ChHH-HHHHHHHhhhCCCCCChhhHHHH
Q 046719 134 LDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIG--DLKR-ACEIFDGMEKSRTRPNVFVYNVL 210 (808)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~-A~~~~~~~~~~~~~~~~~~~~~l 210 (808)
.++-|.|+.. ..+|.+.++.-+|++|...|...+...--.+++.-+-.+ ++-- -.+-|-.|...|.. +..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 3455566553 456778888888888888887777776666665433322 2221 23445555555433 33343
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCh
Q 046719 211 ISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRM 290 (808)
Q Consensus 211 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 290 (808)
+.|++.+ -+|+..++ +..+|.+||.++|+--..+.|.+++++-.....+.+..+||.+|.+-. +
T Consensus 191 -----K~G~vAd--L~~E~~PK-----T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~ 254 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLPK-----TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----Y 254 (625)
T ss_pred -----ccccHHH--HHHhhcCC-----CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----h
Confidence 5566554 34444332 667888999999999888999999998888878888888988887643 2
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHH----HHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHH-HHH
Q 046719 291 EEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEG----VMALYEELSGRGFRINSYTCSILLNALCKEGKVEI-AEE 365 (808)
Q Consensus 291 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~ 365 (808)
....++..+|....+.||..|+|+++++.++.|.++. |.+++.+|.+.|+.|...+|..++..+++.++..+ +..
T Consensus 255 ~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 255 SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 2337888889888889999999999999998887765 45677788888888888888888888888776533 344
Q ss_pred HHHHHHH----CCCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCH---HHHHHHHHHHHhcCCH
Q 046719 366 IVGKEIE----NGLVP----DEVMFNTIVSGYCRTGDLNRAMLAIQQMENHG----LAPNC---ITFNTLIDKFCELGEM 430 (808)
Q Consensus 366 ~~~~~~~----~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~---~~~~~li~~~~~~g~~ 430 (808)
++.++.. +.++| |..-|...+..|.+..+.+-|..+..-..... +.|+. .-|..+....|+....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 4443332 22222 34456677777778888888877766655321 23332 2356677777888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046719 431 DKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDM 510 (808)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m 510 (808)
+....+|+.|+-.-.-|+..+...++.+..-.|.++-.-+++..+...|..-+......++..+++
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~-------------- 480 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR-------------- 480 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc--------------
Confidence 888888888887777778888888888888888888888888888776644444333333333332
Q ss_pred HhCCCCcchh---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-C
Q 046719 511 ENRGVLPNAQ---IYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGL-N 586 (808)
Q Consensus 511 ~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 586 (808)
....|+.. -+.....-+ ...-.+.....-.++.+..+ .....+..+-.+.+.|+.++|.++|..+..++- -
T Consensus 481 --~k~hp~tp~r~Ql~~~~ak~-aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~i 555 (625)
T KOG4422|consen 481 --DKLHPLTPEREQLQVAFAKC-AADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKI 555 (625)
T ss_pred --CCCCCCChHHHHHHHHHHHH-HHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcC
Confidence 22222211 111111111 00111111112223333333 334455566667777778888777777754332 2
Q ss_pred CCHHHHH---HHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 046719 587 PDVITYN---SLISGYSSLGSSQKCLELYENMKKLGI 620 (808)
Q Consensus 587 ~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~ 620 (808)
|-....| .+++.-...+++..|+..++-|...+.
T Consensus 556 p~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 556 PRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 2233333 444555667777777777777765543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-13 Score=132.52 Aligned_cols=452 Identities=13% Similarity=0.087 Sum_probs=307.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHH
Q 046719 132 LSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLI 211 (808)
Q Consensus 132 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 211 (808)
.+...|.--..--..++++..|+++|++++..... +...|..-+..-.+...+..|..++++.+..-+. -...|.-.+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHH
Confidence 45566766667777788899999999999987654 7788888888888999999999999999875333 334566666
Q ss_pred HHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChh
Q 046719 212 SGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRME 291 (808)
Q Consensus 212 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 291 (808)
.+--..|++..|.++|++-.+. .|+...|.+.|..-.+....+.|..++++..- +.|++.+|--....=.+.|+..
T Consensus 149 ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHH
Confidence 6667789999999999998875 79999999999999999999999999999876 5689999998888888999999
Q ss_pred HHHHHHHHHHHC-CC-CCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcC-hhcHHHHHHHHHhcCChHHHHHH--
Q 046719 292 EAKSVCKEMEAH-GF-DPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRIN-SYTCSILLNALCKEGKVEIAEEI-- 366 (808)
Q Consensus 292 ~A~~~~~~m~~~-g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~-- 366 (808)
.|..+|....+. |- ..+...+.+....=.++..++.|.-+|+-.++.-+... ...|......--+.|+.....+.
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999999988764 11 11223445555555567788888888888776532211 23344444444445554443332
Q ss_pred ------HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHH----H----HHHhcCCH
Q 046719 367 ------VGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCI--TFNTLI----D----KFCELGEM 430 (808)
Q Consensus 367 ------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li----~----~~~~~g~~ 430 (808)
++..+..++. |-.+|-..++.-...|+.+...++|++.... ++|-.. .|.-.| + .-....++
T Consensus 305 ~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 2334444333 6667777777777778888888888887764 444221 111111 1 11235677
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 046719 431 DKAEEWVKRMLEKGVSPNVKTNNTLIDGY----GRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIV 506 (808)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 506 (808)
+.++++++..++. ++...+|+.-+--+| .++.++..|.+++.... |..|...++...|..-.+.+.++....+
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 7777777777763 333445544443333 35667777777776655 4466677777777777777777777777
Q ss_pred HHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 046719 507 LKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKRE-MGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGL 585 (808)
Q Consensus 507 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 585 (808)
+++.++-++. +..+|......-...|+.+.|..+|+-.++.. .......|...|+.-...|.++.|..+++.+++.
T Consensus 460 YEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r-- 536 (677)
T KOG1915|consen 460 YEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR-- 536 (677)
T ss_pred HHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--
Confidence 7777776544 66677777666667777777777777776642 1122445566666666677777777777777764
Q ss_pred CCCHHHHHHHHH
Q 046719 586 NPDVITYNSLIS 597 (808)
Q Consensus 586 ~~~~~~~~~l~~ 597 (808)
.+.+..|.++..
T Consensus 537 t~h~kvWisFA~ 548 (677)
T KOG1915|consen 537 TQHVKVWISFAK 548 (677)
T ss_pred cccchHHHhHHH
Confidence 334445555544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.5e-14 Score=134.01 Aligned_cols=324 Identities=21% Similarity=0.246 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH--ccCChh-HHHHHHHHHHHCCCCCCHhhHHHH
Q 046719 239 RVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFC--KAKRME-EAKSVCKEMEAHGFDPDGFTYSML 315 (808)
Q Consensus 239 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~-~A~~~~~~m~~~g~~~~~~~~~~l 315 (808)
+++=|.|+.. ...|.+.++.-+|+.|.+.|++.+...-..|...-+ ...+.- .-.+-|-.|...|-. ...+|.
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sWK-- 191 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSWK-- 191 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-cccccc--
Confidence 3345555554 567888888888888888888777766555554322 222222 122334444444322 233332
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 046719 316 FDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDL 395 (808)
Q Consensus 316 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 395 (808)
.|++.+ ++-+.. +....++..+|.++|+-...+.|.+++.+......+.+..+||.+|.+-.-
T Consensus 192 ------~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~---- 254 (625)
T KOG4422|consen 192 ------SGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY---- 254 (625)
T ss_pred ------cccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----
Confidence 233322 222222 224556666666666666666666666666555555566666666654321
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH-HHH
Q 046719 396 NRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKA----EEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDK-CFQ 470 (808)
Q Consensus 396 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~ 470 (808)
....+++.+|......||..|+|+++.+..+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ +..
T Consensus 255 ~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 255 SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 22255666666666666666666666666666655443 3455556666666666666666666666555432 333
Q ss_pred HHHHHHHC----CCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCcc---hhHHHHHHHHHHhcCCH
Q 046719 471 ILEEMENS----GMKP----NVVSYGSLINWLCKDCKLLEAEIVLKDMENRG----VLPN---AQIYNMLIDGSCTMGRI 535 (808)
Q Consensus 471 ~~~~m~~~----~~~~----~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~g~~ 535 (808)
++.++.+. .++| |...+..-+..|.+..+.+-|.++..-+.... +.|+ ..-|..+..+.|+....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 44443321 1111 23334444445555555555555444443221 1122 11244455555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046719 536 KDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSS 583 (808)
Q Consensus 536 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 583 (808)
+.-..+|+.|+-.-+.|+..+...++.+..-.|.++-..+++.+++..
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 555556655555545555555555555555555555555555555543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-12 Score=124.07 Aligned_cols=438 Identities=15% Similarity=0.139 Sum_probs=334.3
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHH
Q 046719 111 SAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACE 190 (808)
Q Consensus 111 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 190 (808)
.++.+..|.++|.+.+... ..+...|.--+.+-.++.....|+.++++++..-+..|.. |---+-.--..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHH
Confidence 5667889999999998766 4577789999999999999999999999998865554544 4344444456799999999
Q ss_pred HHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-C
Q 046719 191 IFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRD-K 269 (808)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~ 269 (808)
+|++-.. ..|+...|++.|+.-.+-..++.|..++++.+-. .|++.+|---...--++|....+..+|+..... |
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 9999876 5799999999999999999999999999998754 699999999999999999999999999988764 1
Q ss_pred C-CcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhCCChHHHHH--------HHHHHHhC
Q 046719 270 V-EVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPD--GFTYSMLFDGYSKCGDGEGVMA--------LYEELSGR 338 (808)
Q Consensus 270 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~--------~~~~~~~~ 338 (808)
- .-+...+.+....=.++..++.|.-+|+-.++. ++.+ ...|..+...=-+-||...... -|+.+++.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 1 112334455555555678899999999998876 2222 2344444444445566544433 24555555
Q ss_pred CCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-hhHHHHHHH--------HHhcCCHHHHHHHHHHHHHCC
Q 046719 339 GFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDE-VMFNTIVSG--------YCRTGDLNRAMLAIQQMENHG 409 (808)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~ 409 (808)
+ +.|-.+|-..++.-...|+.+...+++++.+..-++... ..|.-.|-. -....+++.+.++|+..++.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l- 395 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL- 395 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-
Confidence 3 446778888888888899999999999999876332221 223222221 12467899999999999884
Q ss_pred CCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh
Q 046719 410 LAPNCITFNTLIDKF----CELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVV 485 (808)
Q Consensus 410 ~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 485 (808)
++....||.-+--.| .++.++..|++++...+ |..|...++...|..-.+.+++|.+..++++..+.+ +.|..
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~ 472 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCY 472 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhH
Confidence 555666665554444 46789999999999887 558889999999999999999999999999999874 56788
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 046719 486 SYGSLINWLCKDCKLLEAEIVLKDMENRG-VLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALIN 562 (808)
Q Consensus 486 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 562 (808)
+|......-...|+.+.|..+|.-..+.. .......|.+.|+.-...|.++.|..+|+++++.. +...+|.++..
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~ 548 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAK 548 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHH
Confidence 88888888888999999999999998763 22344578888888889999999999999999863 23446665554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.8e-11 Score=119.56 Aligned_cols=559 Identities=12% Similarity=0.115 Sum_probs=324.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 046719 136 SINVLLECLVRCNQYDRALDLFDEIVCMG-FRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGF 214 (808)
Q Consensus 136 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (808)
.|..-+..+.++|+...-+..|++++..= +......|...++-....|-++-+..+|++.++.. |. .-+-.|..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~--P~--~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA--PE--AREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC--HH--HHHHHHHHH
Confidence 47777888889999999999999887642 22344578888888888888999999999988753 33 356777888
Q ss_pred HccCCHhHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCcCH--HHHHHHHHH
Q 046719 215 CKEKKIRDAEKLFDEMCQR------KLVPTRVTYNTLVDGYCKVGEFE---KVSALRERMKRDKVEVSL--VMFNSLLGG 283 (808)
Q Consensus 215 ~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~--~~~~~li~~ 283 (808)
++.+++++|.+.+...+.. ..+.+...|.-+.+..+++-+.- .+..+++.+.. .-+|. ..|++|.+-
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHH
Confidence 8999999999888877542 12335556777766666554432 23344444433 22343 468889999
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHH-hCCCCcChhcHHHHHHHHHhcCChHH
Q 046719 284 FCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELS-GRGFRINSYTCSILLNALCKEGKVEI 362 (808)
Q Consensus 284 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~ 362 (808)
|.+.|.++.|..+|++.+.. ...+.-++.+.+.|++-.+..-+..+ +... ..+-+.+.. +++-
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~~n~ed~~-------------dl~~ 321 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-ELADEESGNEEDDV-------------DLEL 321 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcccChhhhh-------------hHHH
Confidence 99999999999999888765 23444556666666543221111110 0000 011111111 1122
Q ss_pred HHHHHHHHHHCC-----------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHH
Q 046719 363 AEEIVGKEIENG-----------LVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPN------CITFNTLIDKFC 425 (808)
Q Consensus 363 a~~~~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~ 425 (808)
...-|+.+.... -..++..|..-+.. ..|+..+-...|.+.... +.|. ...|..+...|-
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHH
Confidence 222233322221 12255566555544 457777777788777653 3322 245778888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 046719 426 ELGEMDKAEEWVKRMLEKGVSPN---VKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLE 502 (808)
Q Consensus 426 ~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 502 (808)
..|+++.|+.+|++..+-..+-- ..+|.....+-.+..+++.|+++++..... |.... ..+...+...+
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~-----~~~yd~~~pvQ 470 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE-----LEYYDNSEPVQ 470 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh-----hhhhcCCCcHH
Confidence 89999999999988876533211 345555566666777888888887776532 22111 11222222221
Q ss_pred HHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046719 503 AEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITS 582 (808)
Q Consensus 503 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 582 (808)
+. +..+...|..+++.--..|-++....+|++++...+. ++.+.......+..+.-++++.+.+++-+.
T Consensus 471 ~r----------lhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 471 AR----------LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred HH----------HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 11 0114455666666666667777777777777765443 333333333334445556677766666554
Q ss_pred CCCCCCH-HHHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH--HHcC-HHHHHHHHHHHHHCCCC
Q 046719 583 SGLNPDV-ITYNSLISGYSS---LGSSQKCLELYENMKKLGIKPSLRTYHPLLSGC--IREG-IVAVEKLFNEMLQINLV 655 (808)
Q Consensus 583 ~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~~-~~~a~~~~~~~~~~~~~ 655 (808)
.-..|++ ..|+..+.-+.+ ..+.+.|..+|++..+ |++|...-+..|+.+- .+.| ...|..++++.... +.
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~ 617 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VK 617 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CC
Confidence 3223443 355555544432 3356777777777777 5666544433333332 2345 66777777775543 23
Q ss_pred CC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC--CH
Q 046719 656 PD--LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM---TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP--KA 728 (808)
Q Consensus 656 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~ 728 (808)
+. ..+||..|.--...=-+..-..+|+++++. -||.. +....+..-++.|.++.|..++....+. ..| +.
T Consensus 618 ~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~ 694 (835)
T KOG2047|consen 618 EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTT 694 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCCh
Confidence 32 245666554433333344455677777763 44443 2334455566777777777777766543 344 45
Q ss_pred HHHHHHHHHHHccCC
Q 046719 729 DTYNILVKGYCNLKD 743 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~ 743 (808)
..|...-.--.+.|+
T Consensus 695 ~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 695 EFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHHHHHhcCC
Confidence 556666666667777
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-12 Score=134.80 Aligned_cols=659 Identities=15% Similarity=0.097 Sum_probs=327.6
Q ss_pred cHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHH
Q 046719 100 TFTNILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAA 179 (808)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (808)
..+..|+.-|+..|..+.|- +|..|.-...+.....++.++.+....++.+.+. .|...+|..+..+|
T Consensus 26 vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 26 VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLLKAY 93 (1088)
T ss_pred hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHHHHH
Confidence 33456777788888888777 7877776666666667778887777777766554 46677888888888
Q ss_pred HhcCChHHHHHHHHH-hhh-------CCC-----------------CCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCC
Q 046719 180 VKIGDLKRACEIFDG-MEK-------SRT-----------------RPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRK 234 (808)
Q Consensus 180 ~~~g~~~~A~~~~~~-~~~-------~~~-----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 234 (808)
...||+.. ++..++ +.. .|. -||.. ..+....-.|-++.+++++..++...
T Consensus 94 r~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 94 RIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 88887654 222222 111 111 11111 12222233344555555554443321
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHH
Q 046719 235 LVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSM 314 (808)
Q Consensus 235 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 314 (808)
.. .+... .++-+.. +..-...+....+..--.++..+|..++..-...|+++.|..++.+|.+.|++.+.+-|-.
T Consensus 170 ~~-~p~~v--fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 170 WN-APFQV--FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred cc-chHHH--HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 11 01000 1222211 1222333333333221247777788888777778888888888888888887777766666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 046719 315 LFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGD 394 (808)
Q Consensus 315 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 394 (808)
|+-+ .++...+..+++.|...|+.|+..|+..-+..+.++|+...+.+...... ......+..+.++.....+
T Consensus 245 Ll~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~h----g~tAavrsaa~rg~~a~k~ 317 (1088)
T KOG4318|consen 245 LLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAH----GFTAAVRSAACRGLLANKR 317 (1088)
T ss_pred hhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhh----hhhHHHHHHHhcccHhHHH
Confidence 6555 67777777777777778888888777777666666555332222111000 0011112222222111111
Q ss_pred HHH-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHhcC---
Q 046719 395 LNR-----AMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEK--GV-SPNVKTNNTLIDGYGRMG--- 463 (808)
Q Consensus 395 ~~~-----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g--- 463 (808)
++. ....+.+..-.|+......|...+.. ..+|+-++.+++...+..- .. ..++..|..++.-|.+.-
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~ 396 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERH 396 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhh
Confidence 111 11111111112222222333322222 2244444444444443321 01 112233333333222211
Q ss_pred -------------------ChHHHHHHHHHHHH----------------CCCCC-------CHhhHHHHHHHHHhcCCHH
Q 046719 464 -------------------HFDKCFQILEEMEN----------------SGMKP-------NVVSYGSLINWLCKDCKLL 501 (808)
Q Consensus 464 -------------------~~~~a~~~~~~m~~----------------~~~~~-------~~~~~~~ll~~~~~~~~~~ 501 (808)
...+..++...... +.+.| -...-+.++..++...+..
T Consensus 397 ~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~l 476 (1088)
T KOG4318|consen 397 ICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKL 476 (1088)
T ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111100 00000 0112234445555555555
Q ss_pred HHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 046719 502 EAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR--EMGPTLVTFNALINGLCKKGRVMEAEDMLPQ 579 (808)
Q Consensus 502 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 579 (808)
+++..-+..... . -...|..||+-++...+.+.|..+.++.... .+.-+..-+..+.+.+.+.+...++..++.+
T Consensus 477 K~l~~~ekye~~-l--f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 477 KILCDEEKYEDL-L--FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHHHHHHH-H--hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhh
Confidence 555443333322 1 1256889999999999999999999888654 2334566678888999999999999999999
Q ss_pred HHhCCCC-CC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHH-------------hHHHHHHHHHHcC-HHHHH
Q 046719 580 ITSSGLN-PD-VITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLR-------------TYHPLLSGCIREG-IVAVE 643 (808)
Q Consensus 580 ~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------------~~~~l~~~~~~~~-~~~a~ 643 (808)
+.+.-.. |. ..+.--+.+.....|+.+...++++-+...|+..+-. ....-...|.+.. +..+.
T Consensus 554 ~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~ 633 (1088)
T KOG4318|consen 554 DKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDL 633 (1088)
T ss_pred hhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHH
Confidence 8873222 21 2333445555667888888888887776665433100 0001111122222 33333
Q ss_pred HHHHHHHHCCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHHH---HCC---------CCC---------CHHHHHHH
Q 046719 644 KLFNEMLQINLVPDLL---VYNALIHCYAEHGDVQKALVLHSEMV---DQG---------IRP---------DKMTYNSL 699 (808)
Q Consensus 644 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~---~~g---------~~p---------d~~~~~~l 699 (808)
+.+-+++.++-..++. -+..=+..|.++|++.+|.++.+.-- ..+ +.| +......|
T Consensus 634 e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRL 713 (1088)
T KOG4318|consen 634 EGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRL 713 (1088)
T ss_pred HHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHH
Confidence 3333333322111111 11111223566666666665543210 000 000 00112236
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChhHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHH
Q 046719 700 IFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLK---DFGGAYIWYREMFENGF-IP-SFCIYNELTNGLK 774 (808)
Q Consensus 700 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~-~~-~~~~~~~l~~~l~ 774 (808)
+..|.+.|+++.|..+|.++. +.|++.+...|+..+.+.. +..++....+++.+... .| +...+..-+-...
T Consensus 714 L~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~ 790 (1088)
T KOG4318|consen 714 LQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFAT 790 (1088)
T ss_pred HHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHh
Confidence 667777888888888888776 5677777777777766544 34445444444444221 11 2222222223333
Q ss_pred hcCChhHHHHHHHHHHHcC
Q 046719 775 QEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 775 ~~g~~~~A~~~~~~~~~~~ 793 (808)
+....+.|.+.+.+.-.+.
T Consensus 791 q~~qkkaAkk~f~r~eeq~ 809 (1088)
T KOG4318|consen 791 QTEQKKAAKKCFERLEEQL 809 (1088)
T ss_pred hHHHHHHHHHHHHHHHHcc
Confidence 3334446666666665553
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.5e-10 Score=112.63 Aligned_cols=525 Identities=11% Similarity=0.091 Sum_probs=298.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC-CCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 046719 242 YNTLVDGYCKVGEFEKVSALRERMKRD-KVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYS 320 (808)
Q Consensus 242 ~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 320 (808)
|-..+..+.++|+.......|++.... .+.-....|...+......|-.+.+.+++++.++. ++....-.+..++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHH
Confidence 444444444555555555555444332 11122234444444444445555555555555443 2222344444455
Q ss_pred hCCChHHHHHHHHHHHhCC------CCcChhcHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 046719 321 KCGDGEGVMALYEELSGRG------FRINSYTCSILLNALCKEGKVE---IAEEIVGKEIENGLVPDEVMFNTIVSGYCR 391 (808)
Q Consensus 321 ~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 391 (808)
+.+++++|.+.+..++... .+.+-..|..+-+...++.+.- ....+++.++.+-..--...|++|.+.|.+
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence 5555555555554443321 1112223333333333322111 122233333322111113456666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHcC-----
Q 046719 392 TGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELG----------------------EMDKAEEWVKRMLEKG----- 444 (808)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~A~~~~~~~~~~~----- 444 (808)
.|.+++|.++|++....- .++.-|+.+.+.|.... +++-....|+.+....
T Consensus 261 ~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred hhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 666666666666655431 12222333333332211 1222333333333221
Q ss_pred ------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046719 445 ------VSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPN------VVSYGSLINWLCKDCKLLEAEIVLKDMEN 512 (808)
Q Consensus 445 ------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~------~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 512 (808)
-+.++..|..-+.. ..|+..+-...+.+.... +.|. ...|..+.+.|-..|+.+.|..+|++..+
T Consensus 339 sVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 11234444443332 346677777778777654 3332 34577888889999999999999999877
Q ss_pred CCCCcc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------------CCCHHHHHHHHHHHHhcCChHH
Q 046719 513 RGVLPN---AQIYNMLIDGSCTMGRIKDAFKFFDEMVKREM-----------------GPTLVTFNALINGLCKKGRVME 572 (808)
Q Consensus 513 ~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~g~~~~ 572 (808)
-..+.- ..+|......-.+..+++.|+++.+......- ..+..+|...++..-..|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 543321 34677777777788889999998887754211 1134456666777777888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCH-HhHHHHHHHHH-HcC---HHHHHHHHH
Q 046719 573 AEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSL-RTYHPLLSGCI-REG---IVAVEKLFN 647 (808)
Q Consensus 573 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~-~~~---~~~a~~~~~ 647 (808)
-..+++.+++..+. .+..-......+-.+..++++.+.|++-+..--.|+. ..|+..+.-+. +-| ++.|..+|+
T Consensus 496 tk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 496 TKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 88899998875432 2222222233345677788999999887765444553 34555444432 223 999999999
Q ss_pred HHHHCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 046719 648 EMLQINLVPDLL--VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM--TYNSLIFGHLREGKLSEVKELVNDMKVKG 723 (808)
Q Consensus 648 ~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 723 (808)
++++ +++|... .|-.....--+.|-...|+.+++++... +++... +||..|.--...=-.....++++++++
T Consensus 575 qaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe-- 650 (835)
T KOG2047|consen 575 QALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE-- 650 (835)
T ss_pred HHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--
Confidence 9998 5666542 2333333334568899999999998764 565443 788777655444445666788888888
Q ss_pred CCCCHHH---HHHHHHHHHccCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChh
Q 046719 724 LIPKADT---YNILVKGYCNLKDFGGAYIWYREMFE-NGFIPSFCIYNELTNGLKQEGKLK 780 (808)
Q Consensus 724 ~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~g~~~ 780 (808)
.-|+... .......-++.|..+.|..+|...-+ .+|..+...|...-..=.+.|+-+
T Consensus 651 ~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 651 SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 5676543 33455666789999999999998877 566777888888877778888843
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6e-12 Score=122.30 Aligned_cols=289 Identities=17% Similarity=0.128 Sum_probs=160.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChH
Q 046719 494 LCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMG--PTLVTFNALINGLCKKGRVM 571 (808)
Q Consensus 494 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 571 (808)
+-...+.+++..-...+...|.+.+...-+....+.....++++|+.+|+++.+.+.- .|..+|+.++ |.++.+-
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s- 313 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS- 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH-
Confidence 3333455555555555555555544444444444555566666666666666665211 1344555444 2222211
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHHcC-HHHHHHHHHHH
Q 046719 572 EAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS-LRTYHPLLSGCIREG-IVAVEKLFNEM 649 (808)
Q Consensus 572 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~-~~~a~~~~~~~ 649 (808)
.+.++.+-+..--+-.+.|...+.+.|+-.++.++|..+|+...+. .|. ...|+.+..-|.... ...|.+-++.+
T Consensus 314 -kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 -KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred -HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 1111111111000112345555666666666666777777666653 344 333444444455555 66666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH
Q 046719 650 LQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA 728 (808)
Q Consensus 650 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 728 (808)
++.+ +.|-..|..|+++|.-.+...=|+-.|+++.+ +.| |...|.+|+.+|.+.++.++|++.|++....| ..+.
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~ 466 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEG 466 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccch
Confidence 6653 45666677777777766766677777777666 344 44566777777777777777777777766543 2244
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHC----CC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFEN----GF-IP-SFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
..+..|+..|.+.++.++|..+|++.++. |. .| ...+..-|+.-+.+.+++++|..++.+..+.
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 56666677777777777776666665541 22 21 2233344556666667777777666666554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.4e-13 Score=130.21 Aligned_cols=222 Identities=14% Similarity=0.071 Sum_probs=173.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHH
Q 046719 564 LCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAV 642 (808)
Q Consensus 564 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a 642 (808)
+.-.|+.-.|...|+..++.... +...|.-+...|....+.++.+..|++..+.+ +.|+.+|..-.+...-.+ +++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 44578888888999988875422 22337778888999999999999999988753 446778887777777777 9999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046719 643 EKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVK 722 (808)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 722 (808)
..-|++.+..+ +.+...|.-+.-+..+.++++++...|++.+++ ++.-...|+..+.++..++++++|.+.|+.+++
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 99999998853 334567777777778889999999999999886 555556899999999999999999999999887
Q ss_pred CCCCC-------HHHHH--HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 723 GLIPK-------ADTYN--ILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 723 g~~p~-------~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
+.|+ ...+. .++- +.-.+++..|..++.++++.+|+ ....+..|+....++|+.++|+.+|++.....
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred -hccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4454 22222 2221 22348999999999999998887 78889999999999999999999999887654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-12 Score=136.89 Aligned_cols=126 Identities=13% Similarity=0.017 Sum_probs=72.6
Q ss_pred HhHHHHHHHHHHcC-HHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC-HHHHHHH
Q 046719 625 RTYHPLLSGCIREG-IVAVEKLFNEMLQI--NLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGI-RPD-KMTYNSL 699 (808)
Q Consensus 625 ~~~~~l~~~~~~~~-~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~pd-~~~~~~l 699 (808)
..|..|++-+.... .+.|..+.++.... ....|..-+..+.+.+.+.+...++.++++++.+.-. .|. ..+...+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 44666666666666 77777777665432 1233455666777777777777777777777765311 222 2245566
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 046719 700 IFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREM 754 (808)
Q Consensus 700 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 754 (808)
.+.....|+.+.-.++++-+...|+.-+ .-+.....+.++...|.+..+..
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~ 622 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPE 622 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHH
Confidence 6666677777776666666665554321 12223334455555555554443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-12 Score=128.10 Aligned_cols=271 Identities=13% Similarity=0.100 Sum_probs=168.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046719 518 NAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLIS 597 (808)
Q Consensus 518 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 597 (808)
+........+-+...+++.+..++++...+. .++....+..-|..+...|+-.+-..+-.++++.- +....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 4444555555566666777777777766665 23444444555556666666666666666666541 234566666666
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHHcC-HHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCC
Q 046719 598 GYSSLGSSQKCLELYENMKKLGIKPS-LRTYHPLLSGCIREG-IVAVEKLFNEMLQI--NLVPDLLVYNALIHCYAEHGD 673 (808)
Q Consensus 598 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 673 (808)
.|...|+..+|.++|.+... +.|. ...|..+...+.-.+ -++|...+..+.+. |. --+..| +.--|.+.++
T Consensus 321 YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~-hlP~LY--lgmey~~t~n 395 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC-HLPSLY--LGMEYMRTNN 395 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC-cchHHH--HHHHHHHhcc
Confidence 66666777777777766653 2333 445666666666666 66666666655542 11 111222 3334666777
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHccCChhH
Q 046719 674 VQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVK--GLIP----KADTYNILVKGYCNLKDFGG 746 (808)
Q Consensus 674 ~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p----~~~~~~~l~~~~~~~g~~~~ 746 (808)
++-|.++|.++.. +-| |+..++-++......+.+.+|..+|+..+.. .+.+ -..+++.|+.+|.+.+++++
T Consensus 396 ~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 396 LKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 7777777777766 444 5557777777777777777777777776521 0111 12346677777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 747 AYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 747 A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
|+..+++++...++ +..++..++.+|...|+.+.|+..|++.+-..|++..
T Consensus 474 AI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 474 AIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 77777777777666 7777777777777777777777777777777777644
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.7e-14 Score=143.51 Aligned_cols=295 Identities=12% Similarity=0.058 Sum_probs=223.2
Q ss_pred CHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 046719 499 KLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKRE--MGPTLVTFNALINGLCKKGRVMEAEDM 576 (808)
Q Consensus 499 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 576 (808)
+..+|...|..+... +.-.......+..+|...+++++|.++|+.+.+.. ...+..+|.+.+--+-+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456777788775444 33244566777888888888888888888887652 11256677776644322 112222
Q ss_pred -HHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCC
Q 046719 577 -LPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKP-SLRTYHPLLSGCIREG-IVAVEKLFNEMLQIN 653 (808)
Q Consensus 577 -~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~ 653 (808)
-+.+.+.. +..+.+|.++.++|.-+++.+.|++.|++.+. +.| ...+|+.+..-+.... ++.|...|+..+...
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 23333332 34578999999999999999999999999886 455 4667776666666666 899999999987642
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHH
Q 046719 654 LVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTY 731 (808)
Q Consensus 654 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~ 731 (808)
+.+-..|..++-.|.+.++++.|.-.|+++.+ +.| +.+....++..+.+.|+.++|+++++++.. +.| |+-.-
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~ 560 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCK 560 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhH
Confidence 22345667788889999999999999999998 566 566778899999999999999999999987 445 56666
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCchhhhHhhhc
Q 046719 732 NILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWTNEDQSAVAK 807 (808)
Q Consensus 732 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (808)
...+..+...+++++|+..++++.+.-|+ +..++..++..|.+.|+.+.|+.-|.=+.+..|+.-...+.-+.++
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i~~k~~~~~ 635 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQIQIKAAIER 635 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchhhHHHHhhh
Confidence 67788888999999999999999988777 8889999999999999999999999999988888666444444444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=152.85 Aligned_cols=260 Identities=18% Similarity=0.180 Sum_probs=107.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 046719 524 MLIDGSCTMGRIKDAFKFFDEMVKRE-MGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSL 602 (808)
Q Consensus 524 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 602 (808)
.+...+...|++++|++++++..... .+.+...|..+.......+++++|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 33555566666666666665443332 1223444444455555566666666666666654322 33444455544 466
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHH
Q 046719 603 GSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQIN-LVPDLLVYNALIHCYAEHGDVQKALVL 680 (808)
Q Consensus 603 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 680 (808)
+++++|.+++.+..+. .++...+..++..+...+ ++++.++++++.... .+.+...|..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666676666655543 244455555566666666 667777766655422 345677888888899999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 681 HSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 681 ~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
+++.++ ..|+ ....+.+++.+...|+.+++.++++...+.. ..|+..|..++.++...|+.++|+.+++++.+..+
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 999998 4664 5578889999999999999888888877642 45667788899999999999999999999998877
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046719 760 IPSFCIYNELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 760 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
. |+.....++.+|...|+.++|..+..++..
T Consensus 246 ~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 D-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T--HHHHHHHHHHHT-----------------
T ss_pred c-cccccccccccccccccccccccccccccc
Confidence 6 899999999999999999999999887754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.8e-13 Score=138.43 Aligned_cols=288 Identities=11% Similarity=0.024 Sum_probs=173.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcch-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 046719 496 KDCKLLEAEIVLKDMENRGVLPNA-QIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAE 574 (808)
Q Consensus 496 ~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 574 (808)
..|+++.|.+.+.+..+. .|+. ..+-....+....|+++.|.+.+.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 345555555555554443 2222 2223334445555666666666665554321111122233355555566666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHH----HHHHHHHcC-HHHHHHHHHHH
Q 046719 575 DMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHP----LLSGCIREG-IVAVEKLFNEM 649 (808)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~~-~~~a~~~~~~~ 649 (808)
..++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+.. +...+.. ...+....+ .+++.+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666666543 223445555666666666666666666666655432 2222211 111111122 22233344444
Q ss_pred HHCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 046719 650 LQINL---VPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMT---YNSLIFGHLREGKLSEVKELVNDMKVKG 723 (808)
Q Consensus 650 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~g 723 (808)
.+... +.+...+..++..+...|+.++|.+.+++..+. .||... ...........++.+.+.+.+++..+
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk-- 327 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK-- 327 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--
Confidence 44321 237788888899999999999999999999984 454432 12233333456788889999988887
Q ss_pred CCC-CH--HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046719 724 LIP-KA--DTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 724 ~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
..| |+ .....++..+.+.|++++|.++|+++......|+...+..++..+.+.|+.++|.+++++.+.
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345 44 566789999999999999999999644444467777788999999999999999999998755
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-11 Score=121.37 Aligned_cols=273 Identities=15% Similarity=0.118 Sum_probs=212.6
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 046719 481 KPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNAL 560 (808)
Q Consensus 481 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 560 (808)
..+......-.+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-.++.+. .+....+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 4456666666777788889999999999888763 446666666677888889888888888888875 45578889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-
Q 046719 561 INGLCKKGRVMEAEDMLPQITSSGLNPD-VITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG- 638 (808)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~- 638 (808)
.--|.-.|+.++|++.|.+.... .|. ...|..+...|+-.|.-++|+..|...-+. ++-...-+..+.--|.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhcc
Confidence 88888889999999999988763 333 357899999999999999999999887764 2222222333344466666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHhHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQ--GIRP----DKMTYNSLIFGHLREGKLSEV 712 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p----d~~~~~~l~~~~~~~g~~~~A 712 (808)
.+-|.+.|.+..... +.|+..++-+.-.....+.+.+|..+|+..++. .+.+ -..+++.|+.+|.+.+++++|
T Consensus 396 ~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999999988763 667888888888888889999999999988732 0111 234688999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 713 KELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 713 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+..+++.+.. .+.+..++..++.+|...|+++.|+..|.+++...|.
T Consensus 475 I~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 475 IDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 9999999874 3447888999999999999999999999999966444
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-12 Score=134.43 Aligned_cols=252 Identities=10% Similarity=0.088 Sum_probs=157.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHH
Q 046719 529 SCTMGRIKDAFKFFDEMVKREMGPTLVTF--NALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQ 606 (808)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 606 (808)
..+.|+++.|...+.++.+. .|+.... ......+...|++++|...++++.+.. +-+......+...|.+.|+++
T Consensus 128 A~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 128 AQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHH
Confidence 34555555555555555543 2222211 122344555555555555555555542 223444555555555556666
Q ss_pred HHHHHHHHHHHCCCCcCHH-------hHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 046719 607 KCLELYENMKKLGIKPSLR-------TYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKAL 678 (808)
Q Consensus 607 ~A~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 678 (808)
+|.+++..+.+.+..++.. +|..++....... .+...++++.+.+. .+.++.....++..+...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 6666655555543221111 1111121111112 34444444444332 2456777888888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 679 VLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 679 ~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
+.+++..+. +||... .++.+....++.+++.+.+++..+. .| |+..+..++..+.+.|++++|.+.|+++.+.
T Consensus 284 ~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 284 QIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999988883 555532 2344445668889999999988874 45 5667788899999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 758 GFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 758 ~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
.|+...+..++.++.+.|+.++|..++++.+..
T Consensus 358 --~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 358 --RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 467777888999999999999999999888764
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.7e-10 Score=116.48 Aligned_cols=133 Identities=16% Similarity=0.048 Sum_probs=115.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKG 737 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 737 (808)
.|......+.+.++.++|...+.++.. +.| ....|...+..+...|.+++|.+.|..+.. +.|+ ......++.+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHH
Confidence 455667788899999999988888877 444 445788888999999999999999999987 7786 5667899999
Q ss_pred HHccCChhHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 046719 738 YCNLKDFGGAYI--WYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAW 797 (808)
Q Consensus 738 ~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 797 (808)
+.+.|+..-|.. ++..+++.++. +.+.|..|+..+.+.|+.++|..-|....+....++
T Consensus 728 lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 999999888888 99999999988 999999999999999999999999999998776544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.3e-11 Score=116.48 Aligned_cols=311 Identities=13% Similarity=0.134 Sum_probs=212.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--cchhHHHHHHHHHHhcC
Q 046719 456 IDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVL--PNAQIYNMLIDGSCTMG 533 (808)
Q Consensus 456 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g 533 (808)
..++-...+.+++..-.......|++.+...-+....+.-...++++|+.+|+++.+.++- .|..+|+.++-. +..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhh
Confidence 3445555566677766666666666666555555555566667777777777777765321 145566555432 222
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 046719 534 RIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYE 613 (808)
Q Consensus 534 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 613 (808)
+-. +.++-.-...-.+--+.|...+.+-|.-.++.++|..+|+..++.+ +.....|+.+..-|....+...|++-|+
T Consensus 312 ~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 211 1111111111011234566667777777888888888888888743 2234678888888888888888888888
Q ss_pred HHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 046719 614 NMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD 692 (808)
Q Consensus 614 ~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd 692 (808)
..++- .+-|...|..|.++|.-.+ ..-|.-.|++..... +.|..+|.+|+++|.+.++.++|++.|++.+..| ..+
T Consensus 389 rAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 88874 3557788888888888888 777888888888753 6689999999999999999999999999999865 335
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHH
Q 046719 693 KMTYNSLIFGHLREGKLSEVKELVNDMKVK----GL-IPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIY 766 (808)
Q Consensus 693 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 766 (808)
...+..|+..|-+.++.++|..++++.++. |. .|. ......|..-+.+.+++++|..+....... .+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~----- 538 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ET----- 538 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--Cc-----
Confidence 578999999999999999999999987652 22 221 222334666677889999998877776643 22
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 767 NELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 767 ~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
..+||..+++++.+.
T Consensus 539 -----------e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 539 -----------ECEEAKALLREIRKI 553 (559)
T ss_pred -----------hHHHHHHHHHHHHHh
Confidence 235677777666653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.1e-12 Score=130.28 Aligned_cols=251 Identities=11% Similarity=0.042 Sum_probs=156.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcchhHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 046719 495 CKDCKLLEAEIVLKDMENRGVLPNAQIY--NMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVME 572 (808)
Q Consensus 495 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 572 (808)
.+.|+++.|...+.++.+. .|+.... ......+...|+++.|...++++.+.. +.+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4455555555555555442 2222211 122344555556666666655555542 2245555555555666666666
Q ss_pred HHHHHHHHHhCCCCCCH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHH
Q 046719 573 AEDMLPQITSSGLNPDV-------ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEK 644 (808)
Q Consensus 573 A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~ 644 (808)
|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.+......+...+...| .++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666665554332111 12222333333334445555555555432 2445666666777777777 777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 046719 645 LFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKG 723 (808)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 723 (808)
.+++..+. ++|.... ++.+....++.+++++..++..+. .| |...+..++..+.+.|++++|.+.|+++.+
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~-- 356 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK-- 356 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 77777763 4444222 233344568999999999999885 45 445678899999999999999999999988
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 724 LIPKADTYNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 724 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
..|+..++..+..++.+.|+.++|..+|++.+..
T Consensus 357 ~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 357 QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6799888889999999999999999999988753
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-11 Score=120.81 Aligned_cols=53 Identities=25% Similarity=0.227 Sum_probs=30.4
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 046719 284 FCKAKRMEEAKSVCKEMEAHGFDPD-GFTYSMLFDGYSKCGDGEGVMALYEELSGR 338 (808)
Q Consensus 284 ~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 338 (808)
|.+.|.+++|++.|.+.++. .|| +..|.....+|...|+++++.+-..+.++.
T Consensus 125 ~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl 178 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL 178 (606)
T ss_pred hhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 44556666666666666553 444 555555666666666666666555555443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-10 Score=107.07 Aligned_cols=420 Identities=13% Similarity=0.103 Sum_probs=238.9
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChH
Q 046719 282 GGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVE 361 (808)
Q Consensus 282 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 361 (808)
..+...|++++|...+..+... -.++...+..|..++.-.|.+.+|.++-+...+ ++.....|.+...+.|+-+
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHH
Confidence 3344566666666666655543 244555566666666666666666665554332 1222223344444555555
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHH
Q 046719 362 IAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNT-LIDKFCELGEMDKAEEWVKRM 440 (808)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~ 440 (808)
+-..+...+.+ ...--.++.......-.+.+|++++......+ |+-...|. +.-+|.+..-++.+.++++-.
T Consensus 139 ~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 139 RILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred HHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 54444444332 11223344444444455677777777776542 23333332 233556666777777777766
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCC
Q 046719 441 LEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKD-----CKLLEAEIVLKDMENRGV 515 (808)
Q Consensus 441 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----~~~~~A~~~~~~m~~~~~ 515 (808)
.++ ++-+....|.......+.=.-..|.+-.+++.+.+-.. ...+.-+++. .+-+.|++++-.+.+.
T Consensus 212 L~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~-- 283 (557)
T KOG3785|consen 212 LRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH-- 283 (557)
T ss_pred HHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhh--
Confidence 654 22244455555444444333333444444443322111 1122233333 3346677777666553
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H----HhcCChHHHHHHHHHHHhCCCCCCH-
Q 046719 516 LPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALING-L----CKKGRVMEAEDMLPQITSSGLNPDV- 589 (808)
Q Consensus 516 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~----~~~g~~~~A~~~~~~~~~~~~~~~~- 589 (808)
.| ..--.|+--|.+.+++.+|..+.+++.. ..|-......++.+ + .....+.-|.+.|+-.-+++..-|.
T Consensus 284 IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI 359 (557)
T KOG3785|consen 284 IP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI 359 (557)
T ss_pred Ch--HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc
Confidence 22 2334456667888999999888766532 12323333322221 1 1122355666777666665555443
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 590 ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCY 668 (808)
Q Consensus 590 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 668 (808)
.--.++..++.-..++++++.+++.+..--...|...++ +.++.+..| +.+|+++|-......+..+......|..+|
T Consensus 360 pGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCy 438 (557)
T KOG3785|consen 360 PGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCY 438 (557)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHH
Confidence 345667777777888999999999888754444444444 567777777 999999998876544444444445667889
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRPDKMT-YNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYN 732 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~pd~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 732 (808)
.+++..+-|..++-++- -+.+..+ ...++.-|.+.+.+=-|.+.|+.+.. ..|++..|.
T Consensus 439 i~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 439 IRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred HhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC
Confidence 99999999988765542 2334443 44556788899999888888988877 677777763
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.1e-10 Score=113.84 Aligned_cols=459 Identities=15% Similarity=0.138 Sum_probs=275.5
Q ss_pred CCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 046719 322 CGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLA 401 (808)
Q Consensus 322 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 401 (808)
.+++...+++.+.++++. +.-..+.....-.++..|+.++|....+..+..++. +.++|..+.-.+....++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHH
Confidence 345555555555555432 112222222223345567777887777777766555 667888877777777888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-C
Q 046719 402 IQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSG-M 480 (808)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~ 480 (808)
|......+.. |...|..+.-.-.+.++++..........+... .....|..+..++.-.|++..|..++++..... -
T Consensus 98 y~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8888776543 566666666666667777777666666665421 244567777777777888888888888876653 2
Q ss_pred CCCHhhHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 046719 481 KPNVVSYGSLI------NWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTL 554 (808)
Q Consensus 481 ~~~~~~~~~ll------~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 554 (808)
.|+...+.... ......|..++|.+.+..-... +......-.+-...+.+.+++++|..++..++.. .||.
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn 252 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDN 252 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cchh
Confidence 45555544332 2334567777777766554432 2212223344566777888899999998888876 3444
Q ss_pred HH-HHHHHHHHHhcCChHHHH-HHHHHHHhCCCCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 046719 555 VT-FNALINGLCKKGRVMEAE-DMLPQITSSGLNPDVIT-YNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLL 631 (808)
Q Consensus 555 ~~-~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 631 (808)
.- |-.+..++.+-.+.-++. .+|....+. .|-... -..=++......-.+..-+++..+.+.|+++--..+.++.
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy 330 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY 330 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH
Confidence 44 444444554333333333 555555442 111110 0000111111223344555666667777765444444433
Q ss_pred HHHHHcC-HHHH-HHHHHHHHHCC----------CCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HH
Q 046719 632 SGCIREG-IVAV-EKLFNEMLQIN----------LVPDLL--VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TY 696 (808)
Q Consensus 632 ~~~~~~~-~~~a-~~~~~~~~~~~----------~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~ 696 (808)
.--.+.. .++- ..+...+-..| -+|... ++..++..+-+.|+++.|...++.++.. .|..+ -|
T Consensus 331 k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly 408 (700)
T KOG1156|consen 331 KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELY 408 (700)
T ss_pred hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHH
Confidence 3211222 1111 11111111110 144444 3456778888999999999999999884 66665 67
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC--CH----HHHHHH-
Q 046719 697 NSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP--SF----CIYNEL- 769 (808)
Q Consensus 697 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~----~~~~~l- 769 (808)
..-+..+.+.|.+++|..++++..+.+ .+|...-..-+.-..+.++.++|.++.....+.|... +. ..|..+
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHh
Confidence 777899999999999999999998854 3454443355666778999999999998888766410 11 122222
Q ss_pred -HHHHHhcCChhHHHHHHHHHHHc
Q 046719 770 -TNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 770 -~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
+.+|.++|++.+|++-|..+.+.
T Consensus 488 ~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 488 DGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHH
Confidence 56788999999999988877653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-11 Score=130.76 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=64.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHH
Q 046719 146 RCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEK 225 (808)
Q Consensus 146 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 225 (808)
..|+++.|...+.+..+..+. +...+-....+..+.|+++.|...+.++.+..+.+...+.-.....+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 346666666666555543322 2223333444455556666666666665543222222223333455555666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046719 226 LFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKV 270 (808)
Q Consensus 226 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 270 (808)
.++++.+..+. +..++..+...+.+.|++++|.++++.+.+.++
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 66666555322 444555555666666666666666666655543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-14 Score=143.39 Aligned_cols=260 Identities=18% Similarity=0.176 Sum_probs=104.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 046719 489 SLINWLCKDCKLLEAEIVLKDMENRG-VLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKK 567 (808)
Q Consensus 489 ~ll~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 567 (808)
.+...+.+.|++++|.++++...... .+.|...|..+.......++.+.|+..++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34555666777777777775543332 2234455555666666777888888888888765433 45556666666 677
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHHcC-HHHHHHH
Q 046719 568 GRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLG-IKPSLRTYHPLLSGCIREG-IVAVEKL 645 (808)
Q Consensus 568 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~-~~~a~~~ 645 (808)
+++++|.+++....+. .++...+..++..+...++++++.++++++.... .+++...|..+...+.+.| .++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7888888877776554 3455666777777788888888888888876532 2345666677777778888 8888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 046719 646 FNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLI 725 (808)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 725 (808)
+++.++.. +.|....+.+++.+...|+.+++.++++...+. .+.|...+..++.++...|+.++|..++++..+ ..
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~ 244 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA-APDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LN 244 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HS
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CcCHHHHHHHHHHHhcccccccccccccccccc--cc
Confidence 88888753 335778888999999999999999998888775 244566788999999999999999999999887 34
Q ss_pred C-CHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 726 P-KADTYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 726 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
| |+.+...++.++...|+.++|..+++++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 5 778888999999999999999999888764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-08 Score=101.22 Aligned_cols=625 Identities=12% Similarity=0.069 Sum_probs=309.1
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHH
Q 046719 110 SSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRAC 189 (808)
Q Consensus 110 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 189 (808)
-..+.+...+.+.+.+++ ..+.-.++....+-.+...|+-++|....+..++..+. +.+.|..+.-.+-...++++|+
T Consensus 18 yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHH
Confidence 345566666666666665 23333445555555556667777777777666665444 6666766666665666777777
Q ss_pred HHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046719 190 EIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDK 269 (808)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 269 (808)
+.|..+.+.+. .|...|.-+.-.-.+.|+++..........+..+ .....|...+.++.-.|++..|..++++..+..
T Consensus 96 Kcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 96 KCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777766543 2555665555555566666666666555555422 144556666666666667777766666665542
Q ss_pred -CCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHH
Q 046719 270 -VEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCS 348 (808)
Q Consensus 270 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 348 (808)
-.|+...|......+.+ .....+.|..++|.+.+......-+ .....-.
T Consensus 174 ~~~~s~~~~e~se~~Ly~-----------------------------n~i~~E~g~~q~ale~L~~~e~~i~-Dkla~~e 223 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQ-----------------------------NQILIEAGSLQKALEHLLDNEKQIV-DKLAFEE 223 (700)
T ss_pred ccCCCHHHHHHHHHHHHH-----------------------------HHHHHHcccHHHHHHHHHhhhhHHH-HHHHHhh
Confidence 13344333322211110 0112233333333333332221100 0000011
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046719 349 ILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFN-TIVSGYCRTGDLNRAM-LAIQQMENHGLAPNCITFNTLIDKFCE 426 (808)
Q Consensus 349 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~ 426 (808)
.-...+.+.+++++|..++..++.++ ||...|. .+..++.+..+..++. .+|....+. + |-...-.-+-.....
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y-~r~e~p~Rlplsvl~ 299 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-Y-PRHECPRRLPLSVLN 299 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-C-cccccchhccHHHhC
Confidence 12234455566666666666666542 3333333 2333332222222232 444443332 1 111100000000011
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HCC----------CCCCHhh--HHH
Q 046719 427 -LGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEME----NSG----------MKPNVVS--YGS 489 (808)
Q Consensus 427 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~----~~~----------~~~~~~~--~~~ 489 (808)
..-.+....++..+.+.|+++ ++..+...|-.....+-..++.-.+. ..| -+|.+.. +-.
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~ 376 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYF 376 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHH
Confidence 111222333444455555442 22233333322111111111111111 110 1444433 345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 046719 490 LINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGR 569 (808)
Q Consensus 490 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 569 (808)
++..+-+.|+++.|...++...++ .+.-...|..=.+.+...|++++|..++++..+.+ .+|...-.--+.-..+.++
T Consensus 377 laqh~D~~g~~~~A~~yId~AIdH-TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAIDH-TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANE 454 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccc
Confidence 566777888888888888888765 22233456566677888888888888888887753 2354443345556667888
Q ss_pred hHHHHHHHHHHHhCCCCCCHH--------HHHHH--HHHHHcCCCHHHHHHHHHHHHHC--CCCcCHHhHHHHHHHHHHc
Q 046719 570 VMEAEDMLPQITSSGLNPDVI--------TYNSL--ISGYSSLGSSQKCLELYENMKKL--GIKPSLRTYHPLLSGCIRE 637 (808)
Q Consensus 570 ~~~A~~~~~~~~~~~~~~~~~--------~~~~l--~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~ 637 (808)
.++|.++.......|. +.. .|-.+ ..+|.+.|++..|++-|..+.+. .+..|..-|. .-|.+.
T Consensus 455 i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfh---tyc~rk 529 (700)
T KOG1156|consen 455 IEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFH---TYCMRK 529 (700)
T ss_pred cHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHH---HHHHhc
Confidence 8888888888877664 221 22222 34667777777777776666543 1112222221 224455
Q ss_pred C-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CC-CCHHHHHHHH----HHHHhc-CCH
Q 046719 638 G-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQG-IR-PDKMTYNSLI----FGHLRE-GKL 709 (808)
Q Consensus 638 ~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~-pd~~~~~~l~----~~~~~~-g~~ 709 (808)
| +..=.++++---...-.|. .+. -...|+++|=+|.+.. .. +.......+- ....++ .+-
T Consensus 530 ~tlrsYv~ll~~~d~L~~~p~--y~~----------Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~ 597 (700)
T KOG1156|consen 530 GTLRSYVELLEWEDNLRSSPY--YLR----------AAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAK 597 (700)
T ss_pred CcHHHHHHHHHHHHhhccChH--HHH----------HHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHH
Confidence 5 3333332221111000111 110 1234566666665532 00 0000111111 111111 111
Q ss_pred hHHHHHHHHHH---------HCC--CCCCHHHHHHHHHHHHccCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 710 SEVKELVNDMK---------VKG--LIPKADTYNILVKGYCNLKD-FGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG 777 (808)
Q Consensus 710 ~~A~~~~~~~~---------~~g--~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 777 (808)
.+|...-+.+. +.| ..+|.. .++..+.+..+ .++|.+++......+.. +...+..-.+.|.+.|
T Consensus 598 kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~-~~~~~iL~~ely~rk~ 673 (700)
T KOG1156|consen 598 KKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKE-KGETYILSFELYYRKG 673 (700)
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhccc-chhhhhhhHHHHHHHH
Confidence 22222222221 112 223433 34555556554 67899999988887766 8888888899999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCc
Q 046719 778 KLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 778 ~~~~A~~~~~~~~~~~~~~~~ 798 (808)
++--|.+..+++....+.+..
T Consensus 674 k~~l~~~~~~~~~~~~~~~~~ 694 (700)
T KOG1156|consen 674 KFLLALACLNNAEGIHGTHPS 694 (700)
T ss_pred HHHHHHHHHHhhhhhcCCCCc
Confidence 999999999998876666544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-12 Score=133.26 Aligned_cols=284 Identities=13% Similarity=0.125 Sum_probs=189.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CcchhHHHHHHHHHHhcCCHHHHHHHH
Q 046719 465 FDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGV--LPNAQIYNMLIDGSCTMGRIKDAFKFF 542 (808)
Q Consensus 465 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 542 (808)
..+|...|..+... +....++...+..+|...+++++|..+|+.+++... .-+..+|.+.+-.+-+ +-++..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45666666663332 333345555666666666666666666666665421 1144455555433211 1122222
Q ss_pred -HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 046719 543 -DEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNP-DVITYNSLISGYSSLGSSQKCLELYENMKKLGI 620 (808)
Q Consensus 543 -~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 620 (808)
+.++.. .+..+.+|.++.+.|.-+++.+.|++.|++.++. .| ...+|+.+..-+.....+|.|...|+..+. +
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~ 484 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--V 484 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--C
Confidence 222222 2335667777777777777777777777777763 34 456676666666677777777777776653 2
Q ss_pred CcC-HHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHH
Q 046719 621 KPS-LRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYN 697 (808)
Q Consensus 621 ~p~-~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~ 697 (808)
.|. ...|.-+.-.|.+.+ ++.|+--|+++++.+ +.+.++...+...+-+.|+.|+|+.+++++... .| |+..-.
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKY 561 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHH
Confidence 222 233444445566666 777777777777754 446677778888889999999999999999874 44 555666
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH
Q 046719 698 SLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSF 763 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 763 (808)
..+..+...+++++|...++++++ +.|+ ...+..++..|.+.|+.+.|+.-|.-|.+.+|++.-
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 788888899999999999999988 7775 566889999999999999999999999988776543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.8e-10 Score=105.94 Aligned_cols=450 Identities=14% Similarity=0.092 Sum_probs=273.5
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCCh
Q 046719 281 LGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKV 360 (808)
Q Consensus 281 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 360 (808)
+.-+....++..|+.+++.-...+-.....+-.-+..++...|++++|...|+.+.... .++...+..|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 34445566777777777665543322222334446678889999999999999988764 34555666677777778999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046719 361 EIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRM 440 (808)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 440 (808)
.+|..+-.+..+ +.-.-..+...-.+.|+-++-..+.+.+.+. ..--.+|.......-.+.+|++++++.
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999888766432 3334445555666778877777766666542 233344555555566789999999999
Q ss_pred HHcCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcch
Q 046719 441 LEKGVSPNVKTNNTLI-DGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNA 519 (808)
Q Consensus 441 ~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~ 519 (808)
... .|+....|..+ -+|.+..-++-+.++++-.... ++.++...|.......+.=+-..|..-.+++.+.+...
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-- 252 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-- 252 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--
Confidence 875 44555555544 3677888888888888877664 45566667766655555433333444444444432111
Q ss_pred hHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 046719 520 QIYNMLIDGSCTM-----GRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNS 594 (808)
Q Consensus 520 ~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 594 (808)
| ..+.-+++. .+-+.|++++-.+.+. .| ..-..|+-.|.+.+++++|..+..++.-. .| .-|..
T Consensus 253 --~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP--~Eyil 321 (557)
T KOG3785|consen 253 --Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TP--YEYIL 321 (557)
T ss_pred --c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--Ch--HHHHH
Confidence 1 122233333 2346778877666653 22 23345566688899999999887766421 22 22221
Q ss_pred HHHHHHcCC-------CHHHHHHHHHHHHHCCCCcCHH-hHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 595 LISGYSSLG-------SSQKCLELYENMKKLGIKPSLR-TYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALI 665 (808)
Q Consensus 595 l~~~~~~~g-------~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 665 (808)
-.-.++..| ...-|.+.|+-.-+.+..-|.. --..+...+.-.. +++..-.++..... +..|....-.+.
T Consensus 322 Kgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~A 400 (557)
T KOG3785|consen 322 KGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLA 400 (557)
T ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHH
Confidence 111222333 3445666666554443332211 1112222222222 66666666666554 333333344578
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCC
Q 046719 666 HCYAEHGDVQKALVLHSEMVDQGIRPDKMTYN-SLIFGHLREGKLSEVKELVNDMKVKGLIPKA-DTYNILVKGYCNLKD 743 (808)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~ 743 (808)
.+++..|++.+|.++|-++..-.++ |..+|. .|+.+|.+.++.+.|++++-++- -..+. .....++.-|.+++.
T Consensus 401 QAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~e 476 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANE 476 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHH
Confidence 8999999999999999887643333 444444 56788889999998887765542 12222 234466777889999
Q ss_pred hhHHHHHHHHHHHCCCCCC
Q 046719 744 FGGAYIWYREMFENGFIPS 762 (808)
Q Consensus 744 ~~~A~~~~~~~~~~~~~~~ 762 (808)
+--|.+.|+.+...+|.|.
T Consensus 477 FyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 477 FYYAAKAFDELEILDPTPE 495 (557)
T ss_pred HHHHHHhhhHHHccCCCcc
Confidence 9888888888877765543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-08 Score=106.39 Aligned_cols=179 Identities=14% Similarity=0.103 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC--CcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 588 DVITYNSLISGYSSLGSSQKCLELYENMKKLGI--KPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALI 665 (808)
Q Consensus 588 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 665 (808)
|+..-..-+.++...+-+.+-+++++++.-.+- ..+...-+.|+-...+.......+..+++-..+ .|+ +.
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD-a~~------ia 1055 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD-APD------IA 1055 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC-chh------HH
Confidence 444455566777778888888888888764211 111111222222223333444445555544332 232 22
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 046719 666 HCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFG 745 (808)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 745 (808)
.....++-++||..+|++.-- +....+.|+. .-+.++.|.++.++.- .+..|..++.+-.+.|...
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchH
Confidence 334445556666666655321 2222222222 1233344444433321 1234444444444444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 746 GAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 746 ~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
+|++-|-++ .|+..|..+++...+.|+|++-.+++.-+.++.
T Consensus 1122 dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1122 DAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred HHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 444444332 134444444444444444444444444444433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.7e-11 Score=110.28 Aligned_cols=289 Identities=17% Similarity=0.140 Sum_probs=199.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHH
Q 046719 497 DCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPT---LVTFNALINGLCKKGRVMEA 573 (808)
Q Consensus 497 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 573 (808)
+++.++|..+|-+|.+.+.. +..+--+|.+.|...|.+|.|+.+...+.++.--+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 45677777777777764222 445566777888888888888888887776521111 22344566667788888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCH----HhHHHHHHHHHHcC-HHHHHHHHHH
Q 046719 574 EDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSL----RTYHPLLSGCIREG-IVAVEKLFNE 648 (808)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~-~~~a~~~~~~ 648 (808)
+.+|..+.+.+ .--......|+..|-...+|++|++.-+++.+.+-.+.. ..|.-+........ .+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 88888888643 223456677788888888888888888888776543332 12333333333344 7888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 046719 649 MLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM--TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP 726 (808)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 726 (808)
..+.+ +.....-..+.+.+...|+++.|.+.++.+.+. .|+.. +...|..+|.+.|+.++...++.++.+ ..+
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~--~~~ 280 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME--TNT 280 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--ccC
Confidence 88754 334445556778888999999999999999885 45543 677889999999999999999999887 344
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCChhHHHHHHHHHHHcCC
Q 046719 727 KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLK---QEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 727 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~g~~~~A~~~~~~~~~~~~ 794 (808)
+...-..+...-....-.+.|..++.+-+.. +|+...++.|+.... ..|++++-+..+++|.....
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 4444445555555555567777777666655 588888888877653 34667888888888876543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-09 Score=110.25 Aligned_cols=125 Identities=16% Similarity=0.101 Sum_probs=100.7
Q ss_pred HHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC
Q 046719 631 LSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGK 708 (808)
Q Consensus 631 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~ 708 (808)
...+.+.+ .+++...+.+..... +.....|......+...|..++|.+.|..... +.||.+ +..+++.++.+.|+
T Consensus 657 a~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~ 733 (799)
T KOG4162|consen 657 ADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGS 733 (799)
T ss_pred HHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCC
Confidence 33455556 677776666666542 33456677777788889999999999999998 678765 88999999999998
Q ss_pred HhHHHH--HHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 709 LSEVKE--LVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 709 ~~~A~~--~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
..-|.. ++..+.+ +.| ++..|..++..+.+.|+.+.|.+.|+.+.+....
T Consensus 734 ~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 734 PRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred cchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 877777 9999998 556 7899999999999999999999999999886543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-07 Score=100.24 Aligned_cols=82 Identities=15% Similarity=0.170 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFI-PSFCIYNELTNGL 773 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~l 773 (808)
||.....+|...+.+.-| ++....+.....-..-++.-|...|-++|-+.+++..+ |.. .....++.|+-.|
T Consensus 1251 tWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLY 1323 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILY 1323 (1666)
T ss_pred HHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHH
Confidence 455555555544433322 22222233334445566666667777777777776665 222 1345556666555
Q ss_pred HhcCChhHHHH
Q 046719 774 KQEGKLKEAQI 784 (808)
Q Consensus 774 ~~~g~~~~A~~ 784 (808)
.+- +.++-.+
T Consensus 1324 sky-kp~km~E 1333 (1666)
T KOG0985|consen 1324 SKY-KPEKMME 1333 (1666)
T ss_pred Hhc-CHHHHHH
Confidence 544 4444333
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-10 Score=110.53 Aligned_cols=285 Identities=16% Similarity=0.151 Sum_probs=173.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 046719 497 DCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDM 576 (808)
Q Consensus 497 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 576 (808)
.|++.+|+++..+..+.+.. ....|..-+.+.-..|+.+.+-.++.++.+..-.++....-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 35555555555554444322 22334444445555555555555555555442233444444555555555666666555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCH-------HhHHHHHHHHHHcC-HHHHHHHHHH
Q 046719 577 LPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSL-------RTYHPLLSGCIREG-IVAVEKLFNE 648 (808)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~-~~~a~~~~~~ 648 (808)
++++.+.+ +.+.........+|.+.|++.....++.++.+.+.-.+. .++..++.-....+ .+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 55555543 223444555555566666666666666666555443332 23444444433333 3443444444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH
Q 046719 649 MLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA 728 (808)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 728 (808)
...+ ...++..-.+++.-+.++|+.++|.++.++..+++..|.. .....+.+-++.+.-++..++..+. ...++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 4332 3445666677777888889999999988888887766652 2223455666667667777776553 22345
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
..+..|+..|.+.+.|.+|...++.+++. .|+...|..++..+.+.|+.++|....++.+-
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 77888888899999999999999888765 57788888889999999999999888888773
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-10 Score=109.35 Aligned_cols=292 Identities=15% Similarity=0.153 Sum_probs=152.0
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHH
Q 046719 148 NQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLF 227 (808)
Q Consensus 148 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 227 (808)
|+|..|..+..+..+.+.. ....|.....+--+.|+.+.|-.+..++.+....++..++-+........|++..|..-.
T Consensus 98 G~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5555555555554444333 333444444455555556666555555555433444455555555555555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 046719 228 DEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDP 307 (808)
Q Consensus 228 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 307 (808)
+.+.+.+.. +..........|.+.|++..+..++..+.+.|.-.+...-. .
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------l 227 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------L 227 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------H
Confidence 555554332 44445555555555555555555555555554433321000 0
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 046719 308 DGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVS 387 (808)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 387 (808)
...+|..+++-....+..+.-...+++...+ .+.++..-..++.-+.++|..++|.++..+..+++.+|. ... .-
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~ 302 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LI 302 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HH
Confidence 0123444444444444444444444444332 222334444455555566666666666666665554443 111 11
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 046719 388 GYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDK 467 (808)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (808)
...+.++.+.-++..++..+.... ++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+..+
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHH
Confidence 233455555555555555554222 4456666666666666666666666655544 4566666666666666666666
Q ss_pred HHHHHHHHHH
Q 046719 468 CFQILEEMEN 477 (808)
Q Consensus 468 a~~~~~~m~~ 477 (808)
|.++.++...
T Consensus 380 A~~~r~e~L~ 389 (400)
T COG3071 380 AEQVRREALL 389 (400)
T ss_pred HHHHHHHHHH
Confidence 6666666543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.5e-10 Score=104.47 Aligned_cols=287 Identities=18% Similarity=0.170 Sum_probs=147.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHH
Q 046719 393 GDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSP---NVKTNNTLIDGYGRMGHFDKCF 469 (808)
Q Consensus 393 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~ 469 (808)
.+.++|.++|-+|.+.... +..+-.+|.+.|.+.|++|.|++++..+.+..--+ .......|..-|...|-+|.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4445555555555543211 33333445555555555555555555554431000 0122334444555555555555
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc----hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046719 470 QILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPN----AQIYNMLIDGSCTMGRIKDAFKFFDEM 545 (808)
Q Consensus 470 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 545 (808)
.+|..+.+.+ .--......|+..|-+..+|++|+++-+++.+.+..+. ...|.-+...+....+++.|+.++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 5555554422 11233444555555555555555555555554433322 123555666666666666666666666
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHH
Q 046719 546 VKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLR 625 (808)
Q Consensus 546 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 625 (808)
.+.+.. ++..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|...|+.++...++..+.+.. ++..
T Consensus 207 lqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~ 283 (389)
T COG2956 207 LQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGAD 283 (389)
T ss_pred HhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCcc
Confidence 665322 3333444555666667777777777766665322223455666667777777777777776666542 3333
Q ss_pred hHHHHHHHH-HHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---ccCCHHHHHHHHHHHHH
Q 046719 626 TYHPLLSGC-IREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYA---EHGDVQKALVLHSEMVD 686 (808)
Q Consensus 626 ~~~~l~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~ 686 (808)
....+.... ...|.+.|.....+-+.. .|+...+..+++... ..|...+-+.+++.|+.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 333333322 233355555555444442 466666666665543 23455666666666654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-11 Score=112.26 Aligned_cols=234 Identities=15% Similarity=0.067 Sum_probs=198.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHH-HHHHHHH
Q 046719 558 NALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHP-LLSGCIR 636 (808)
Q Consensus 558 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~ 636 (808)
+.+...|.+.|.+.+|.+.|+..++. .|-+.||..|...|.+..++..|+.++.+-.+. .|-.+|+.. ....+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 56788899999999999999988875 567778888889999999999999999988874 466666543 3444555
Q ss_pred cC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 046719 637 EG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKEL 715 (808)
Q Consensus 637 ~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~ 715 (808)
.+ .++|.++|+...+.. +.++....++...|.-.++.+-|+..|+++++.|+. +...|+.++-+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 66 899999999998864 556667777777888899999999999999999865 667889999999999999999999
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 716 VNDMKVKGLIPK--ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 716 ~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
|++++...-.|+ ..+|..++......||+.-|.+.|+-++..+.+ +.+.++.|+..-.+.|+.++|..+++.+....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999886544454 578999999999999999999999999988877 89999999999999999999999999999998
Q ss_pred CCCCc
Q 046719 794 KDAWT 798 (808)
Q Consensus 794 ~~~~~ 798 (808)
|+-.+
T Consensus 460 P~m~E 464 (478)
T KOG1129|consen 460 PDMAE 464 (478)
T ss_pred ccccc
Confidence 87544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.8e-09 Score=99.08 Aligned_cols=272 Identities=12% Similarity=0.049 Sum_probs=132.2
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 046719 480 MKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNA 559 (808)
Q Consensus 480 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 559 (808)
++.|+.....+.+.+...|+.++|+..|++....++- +........-.+...|+.++...+...+.... .-....|..
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 3445555555555555555555555555555443111 11112222223344555555555554444321 112222222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-
Q 046719 560 LINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG- 638 (808)
Q Consensus 560 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~- 638 (808)
-+..+...++++.|+.+-++.++.. +.++..|..-...+...+++++|.--|+...... +-+..+|.-|+..|...|
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 2333344455555555555555432 1233344444444555555666555555555321 123455555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHcc-CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALI-HCYAEH-GDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKEL 715 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~-g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~ 715 (808)
..+|..+-+...+. ++.+..+...+. ..+... ---++|.+++++.+. +.|+.. ..+.++..|...|..++++.+
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 55555554444432 122222222221 122111 123556666666555 455544 455566666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 716 VNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 716 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+++.+. ..||......|++.+...+.+++|...|..++..+|+
T Consensus 461 Le~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 461 LEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 666555 4566666666666666666666666666666655544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.7e-08 Score=105.21 Aligned_cols=184 Identities=11% Similarity=0.012 Sum_probs=119.9
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 046719 115 PSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDG 194 (808)
Q Consensus 115 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (808)
...|+..|-+..+... .=..+|..|...|...-+...|...|+.+.+.+.. |..++......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 4555555544444332 12446888888888777888888888888776555 777888888888888888888887333
Q ss_pred hhhCCCC-CChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC
Q 046719 195 MEKSRTR-PNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVS 273 (808)
Q Consensus 195 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 273 (808)
.-+..+. .-...|..+.-.|.+.++...|..-|+...+..+. |...|..+..+|.+.|++..|..+|.+.....+...
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 3222110 01122333344456778888888888888776544 677888888888888888888888887766432211
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 274 LVMFNSLLGGFCKAKRMEEAKSVCKEMEA 302 (808)
Q Consensus 274 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 302 (808)
-..|- ..-.-|..|.+.+|...+.....
T Consensus 631 y~~fk-~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 631 YGRFK-EAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHH-HHHHHHHhhhHHHHHHHHHHHHH
Confidence 11222 12234577888888888777654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-07 Score=97.42 Aligned_cols=482 Identities=18% Similarity=0.193 Sum_probs=232.8
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHH
Q 046719 218 KKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVC 297 (808)
Q Consensus 218 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 297 (808)
.++.+|+.+|-+-- + -...|.+|....+++++..+-+.. |.+.-...-.+.+.++...|+-+.|-++-
T Consensus 545 kkfk~ae~ifleqn------~---te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~elk 612 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQN------A---TEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAELK 612 (1636)
T ss_pred hhhhHHHHHHHhcc------c---HHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhhc
Confidence 45677777664321 1 123456677777778777765543 22222233345555666666666555431
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 046719 298 KEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVP 377 (808)
Q Consensus 298 ~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 377 (808)
+ .+..+ .+-|+.|.+.|.+-.|.+....-. ....|......+..++.+..-++.|-++|+++..
T Consensus 613 ----~----sdgd~-laaiqlyika~~p~~a~~~a~n~~--~l~~de~il~~ia~alik~elydkagdlfeki~d----- 676 (1636)
T KOG3616|consen 613 ----E----SDGDG-LAAIQLYIKAGKPAKAARAALNDE--ELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----- 676 (1636)
T ss_pred ----c----ccCcc-HHHHHHHHHcCCchHHHHhhcCHH--HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC-----
Confidence 1 12222 234667777777766655431100 0111333333344444444445555555554432
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 046719 378 DEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITF-NTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLI 456 (808)
Q Consensus 378 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 456 (808)
+.-.+..|-+-.-+.+|+++-+-. .+..+++. ......+...|+++.|...|-+.. .....+
T Consensus 677 ----~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kai 739 (1636)
T KOG3616|consen 677 ----FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAI 739 (1636)
T ss_pred ----HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHH
Confidence 111222222222333444333221 11122211 122233444555665555443321 111233
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHH
Q 046719 457 DGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIK 536 (808)
Q Consensus 457 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 536 (808)
.+-....+|.+|+.+++.++... .-...|..+.+.|...|+++.|.++|.+.- .++-.|.+|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 44455667777777777766542 233456666677777777777777775432 2344566777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 046719 537 DAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMK 616 (808)
Q Consensus 537 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 616 (808)
+|.++-.+.. |.......|..-..-+-+.|++.+|.+++-.+. .|+. .|..|-+.|..+..+++..+-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 7777765543 223334445555555666777777766654332 2332 3556667777777766665432
Q ss_pred HCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 046719 617 KLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMT 695 (808)
Q Consensus 617 ~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~ 695 (808)
.. --..|-..+..-+...| +..|++-|-+.-+ |.+-+++|-..+-|++|.++-+. .| ..|..-
T Consensus 878 ~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt---eg-g~n~~k 941 (1636)
T KOG3616|consen 878 GD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT---EG-GANAEK 941 (1636)
T ss_pred hh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc---cc-cccHHH
Confidence 11 11233444455566666 6666665554332 34455666666666666655432 11 112222
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQ 775 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 775 (808)
....+|+-.-.| +.|.+++++. | ....-++-.+..+-++-|..+-+-..+. .-..+...++..+-.
T Consensus 942 ~v~flwaksigg--daavkllnk~---g------ll~~~id~a~d~~afd~afdlari~~k~---k~~~vhlk~a~~led 1007 (1636)
T KOG3616|consen 942 HVAFLWAKSIGG--DAAVKLLNKH---G------LLEAAIDFAADNCAFDFAFDLARIAAKD---KMGEVHLKLAMFLED 1007 (1636)
T ss_pred HHHHHHHHhhCc--HHHHHHHHhh---h------hHHHHhhhhhcccchhhHHHHHHHhhhc---cCccchhHHhhhhhh
Confidence 222333322222 3333333331 1 0111122233444455554444433332 123344455555555
Q ss_pred cCChhHHHHHHHHHHHcCCCC
Q 046719 776 EGKLKEAQILCSEISIVGKDA 796 (808)
Q Consensus 776 ~g~~~~A~~~~~~~~~~~~~~ 796 (808)
.|++++|-+.+-++++.+.-+
T Consensus 1008 egk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 1008 EGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred ccchhhhhHhhHHHhhccccc
Confidence 666666655555555555433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-07 Score=101.41 Aligned_cols=283 Identities=10% Similarity=-0.067 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046719 467 KCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMV 546 (808)
Q Consensus 467 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 546 (808)
.|+..+.+..+. ...+..+|+.|.-. ...|++.-|..-|-+-.... +....+|..+.-.+.+..+++.|...|....
T Consensus 801 ~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 801 TAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 455555555443 13355566655443 44566666655555544432 2255567777777777777777777777766
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH--Hh--CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----
Q 046719 547 KREMGPTLVTFNALINGLCKKGRVMEAEDMLPQI--TS--SGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKL---- 618 (808)
Q Consensus 547 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 618 (808)
... +.|...|-.........|+.-+...+|..- .. .|--++..-|..-.......|+.++-+...+++...
T Consensus 878 SLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 878 SLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 542 224555555444455566666666666652 11 222334333333333344455555444333332211
Q ss_pred -----CCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHccCCHHHHHHHHHHHHHC
Q 046719 619 -----GIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQI-NLVPDLLVYN----ALIHCYAEHGDVQKALVLHSEMVDQ 687 (808)
Q Consensus 619 -----~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~ 687 (808)
+.+.+...|.+......+.+ +.++.++..+++.. ...-|...|+ ...+.++..|+++.|..-+......
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 23333455555555555555 55555554443320 0011222222 2233344445555444333322110
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 688 GIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKG-LIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 688 g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
.|..+...-+. ..-.++++++.+.|++++.-- -..+ ......++.+....+..+.|...+-+....
T Consensus 1037 ---vdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1037 ---VDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred ---HHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 11111111111 133455666666666654310 0111 122334444445555556665555555543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-07 Score=98.89 Aligned_cols=561 Identities=12% Similarity=0.114 Sum_probs=289.0
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCcCHhhHHHHHHHH
Q 046719 109 LSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMG---------FRPDKFTYGKAVQAA 179 (808)
Q Consensus 109 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~l~~~~ 179 (808)
|..-|+-+.|.+-...++ +..+|..|.+.+++..+++-|.-.+..|.... -.++ .+-..+.-..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 445566666655544443 34457777777777777777766665553210 0111 1111122223
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 046719 180 VKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVS 259 (808)
Q Consensus 180 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 259 (808)
...|-+++|+.+|++..+. ..|=..|-..|.+++|.++-+.--+. .=..||.....-+-..+|.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHH
Confidence 4566777777777776542 23334455667777777765432211 12235555555556667777777
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 046719 260 ALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRG 339 (808)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 339 (808)
+.|++... |--.++.. +. .+.....++.+.+ .|...|.-...-+-..|+.+.|+.+|+...+
T Consensus 879 eyyEK~~~----hafev~rm-L~-----e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-- 940 (1416)
T KOG3617|consen 879 EYYEKAGV----HAFEVFRM-LK-----EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD-- 940 (1416)
T ss_pred HHHHhcCC----hHHHHHHH-HH-----hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence 77766421 11111111 11 0111112222222 2445566566666678999999999887654
Q ss_pred CCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 046719 340 FRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNT 419 (808)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 419 (808)
|..+++..|-.|+.++|-++-++-. |....-.+.+.|-..|++.+|...|.+... +..
T Consensus 941 -------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsn 998 (1416)
T KOG3617|consen 941 -------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSN 998 (1416)
T ss_pred -------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHH
Confidence 4557778888899999988876643 445555688899999999999998877653 334
Q ss_pred HHHHHHhcCCH---------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH--------H
Q 046719 420 LIDKFCELGEM---------------DKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEM--------E 476 (808)
Q Consensus 420 li~~~~~~g~~---------------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m--------~ 476 (808)
.|+.|-.++.- -.|-+.|++. |. -...-+..|-+.|.+.+|+++--+- +
T Consensus 999 AIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lI 1070 (1416)
T KOG3617|consen 999 AIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLI 1070 (1416)
T ss_pred HHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHH
Confidence 44443332221 1222222221 11 1122334566777777776653221 1
Q ss_pred HC--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC
Q 046719 477 NS--GMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR-EMGPT 553 (808)
Q Consensus 477 ~~--~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~ 553 (808)
.. .-..|+...+.-.+.++...++++|..++-..++. ...+. +|...++.-..++-+.|... +-.|+
T Consensus 1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~Alq-lC~~~nv~vtee~aE~mTp~Kd~~~~ 1140 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGALQ-LCKNRNVRVTEEFAELMTPTKDDMPN 1140 (1416)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHH-HHhcCCCchhHHHHHhcCcCcCCCcc
Confidence 11 12335666666777777777777777776655431 22222 23333333333333333221 12233
Q ss_pred H----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH-------------HHHH
Q 046719 554 L----VTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELY-------------ENMK 616 (808)
Q Consensus 554 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~ 616 (808)
. .....+...|.+.|.+..|-+-|.+.-.+ ...+.++.+.|+.++..-+- +-+.
T Consensus 1141 e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQ 1211 (1416)
T KOG3617|consen 1141 EQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQ 1211 (1416)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhh
Confidence 2 33455566777788887777666554321 12234445555544321110 1111
Q ss_pred HCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 046719 617 KLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMT 695 (808)
Q Consensus 617 ~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~ 695 (808)
......++.+...++.-|.+.. ++.-..+|...... .+..|..+-. ..|-+++|-+.+.++..++. ....
T Consensus 1212 tlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydK---a~gAl~eA~kCl~ka~~k~~--~~t~ 1282 (1416)
T KOG3617|consen 1212 TLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDK---AMGALEEAAKCLLKAEQKNM--STTG 1282 (1416)
T ss_pred hcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhH---HhHHHHHHHHHHHHHHhhcc--hHHH
Confidence 1233445555555554444443 44433344333221 1111111111 12455666666666654321 1112
Q ss_pred HHHHHHHHHh-----------cCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 696 YNSLIFGHLR-----------EGKLSEVKELVNDMKVKGLIPK----ADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 696 ~~~l~~~~~~-----------~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
++.|-.-... ..+..+.+.-...+.+..+.|+ ...|..++..+....+|..|.+.++++....|.
T Consensus 1283 l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~ 1362 (1416)
T KOG3617|consen 1283 LDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPN 1362 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCc
Confidence 3322211111 1134444555555555443333 356778888888888899998888888877655
Q ss_pred CCHH
Q 046719 761 PSFC 764 (808)
Q Consensus 761 ~~~~ 764 (808)
-|..
T Consensus 1363 ~~~s 1366 (1416)
T KOG3617|consen 1363 VDLS 1366 (1416)
T ss_pred cchh
Confidence 4443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5e-07 Score=93.28 Aligned_cols=192 Identities=22% Similarity=0.289 Sum_probs=103.3
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 046719 177 QAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFE 256 (808)
Q Consensus 177 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 256 (808)
.+......+..|+.+++.+..... -..-|..+...|+..|+++.|+++|.+.- .++-.|.+|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 334445556666666665554321 22345556666666666666666665432 2344566666666666
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 046719 257 KVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELS 336 (808)
Q Consensus 257 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 336 (808)
.|..+-++. .|++.....|-.-..-.-+.|++.+|.++|-.+. .|+ .-|.+|-+.|..+..+++.++-.
T Consensus 809 da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhC
Confidence 666666554 2344444455555555556666666666653321 122 23456666666666666655432
Q ss_pred hCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 046719 337 GRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAI 402 (808)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 402 (808)
... -..|...+..-+-..|++..|+.-|-+.. -|.+-+.+|-..+-|++|.++-
T Consensus 878 ~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 878 GDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 211 12234445555666666666666554332 2555566666666666665543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-08 Score=105.88 Aligned_cols=291 Identities=17% Similarity=0.134 Sum_probs=145.8
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-----C
Q 046719 319 YSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRT-----G 393 (808)
Q Consensus 319 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g 393 (808)
+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.++. |..-|..+..+..-. .
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccccc
Confidence 34444444444444432222 1112223333444455555555555555555555432 333333333333111 1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 046719 394 DLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEM-DKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQIL 472 (808)
Q Consensus 394 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 472 (808)
+.+....+++++...- |.......+.-.+.....+ ..+...+..+..+|++ .+++.+-..|....+.+-..+++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 3445555555554432 2222211111111111111 2333444445555543 23444444444444443344444
Q ss_pred HHHHHC--------------CCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHH
Q 046719 473 EEMENS--------------GMKPNV--VSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIK 536 (808)
Q Consensus 473 ~~m~~~--------------~~~~~~--~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 536 (808)
...... .-+|.. +++..+...|...|++++|+++.++.++.. +..+..|..-.+.+-+.|+++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHH
Confidence 443221 012333 344555566667777777777777777652 223556666777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHcCCCHHHH
Q 046719 537 DAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVI------TY--NSLISGYSSLGSSQKC 608 (808)
Q Consensus 537 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~~A 608 (808)
+|.+..+.....+.. |..+-+-.+..+.++|++++|.+++......+..|-.. .| .....+|.+.|++..|
T Consensus 246 ~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 246 EAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 777777777765433 55555666667777777777777777776654332211 12 3345577778888877
Q ss_pred HHHHHHHHHC
Q 046719 609 LELYENMKKL 618 (808)
Q Consensus 609 ~~~~~~~~~~ 618 (808)
+..|..+.+.
T Consensus 325 Lk~~~~v~k~ 334 (517)
T PF12569_consen 325 LKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHH
Confidence 7777666543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.2e-08 Score=98.49 Aligned_cols=182 Identities=10% Similarity=0.041 Sum_probs=117.4
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHH--cC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 046719 603 GSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIR--EG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALV 679 (808)
Q Consensus 603 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 679 (808)
+..+.+.++..... +..|. ..+.+++..+.+ .. ...+.+++....+........+.-.++......|+++.|++
T Consensus 321 nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 NKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred hhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 44445555444332 22233 334444444332 23 66777777777665333334566677788889999999999
Q ss_pred HHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC---C--CCCC-HHHHHHHHHHHHccCChh
Q 046719 680 LHS--------EMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVK---G--LIPK-ADTYNILVKGYCNLKDFG 745 (808)
Q Consensus 680 ~~~--------~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g--~~p~-~~~~~~l~~~~~~~g~~~ 745 (808)
++. .+.+.+..|..+ ..+...+.+.++.+.|..++.++++. . ..+. ..++..++..-.+.|+-+
T Consensus 398 il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 999 666655555554 35666677777766666666665431 0 0111 234445555556779999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046719 746 GAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 746 ~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
+|...++++.+.++. |......++.+|.+. +.+.|..+-.++..
T Consensus 476 ea~s~leel~k~n~~-d~~~l~~lV~a~~~~-d~eka~~l~k~L~p 519 (652)
T KOG2376|consen 476 EASSLLEELVKFNPN-DTDLLVQLVTAYARL-DPEKAESLSKKLPP 519 (652)
T ss_pred HHHHHHHHHHHhCCc-hHHHHHHHHHHHHhc-CHHHHHHHhhcCCC
Confidence 999999999997766 899999999999887 77888887766543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.9e-10 Score=110.20 Aligned_cols=198 Identities=13% Similarity=0.113 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 590 ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCY 668 (808)
Q Consensus 590 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 668 (808)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...| +++|.+.+++.++.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555555431 222444444555555555 666666666665543 33455667777788
Q ss_pred HccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhH
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGG 746 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 746 (808)
...|++++|.+.++++.+....+ ....+..++.++...|++++|...++++.+. .| +...+..++..+...|++++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHH
Confidence 88888888888888887642222 3346677888888889999999999888773 34 45677788888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 747 AYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 747 A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
|..+++++.+..+ .+...+..++..+...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYN-QTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999998887743 36677777888888889999998888877654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5e-08 Score=94.03 Aligned_cols=291 Identities=12% Similarity=0.008 Sum_probs=205.5
Q ss_pred hcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHH
Q 046719 426 ELGEMDKAEEWVKRMLEK-GVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNV-VSYGSLINWLCKDCKLLEA 503 (808)
Q Consensus 426 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~A 503 (808)
-.++...|...+-.+... -++-|+.....+...+...|+.++|+..|++.... .|+. ...-.....+.+.|+.++.
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhH
Confidence 344545555544444333 23446667777777888888888888888776543 3322 2222333345567777777
Q ss_pred HHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046719 504 EIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSS 583 (808)
Q Consensus 504 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 583 (808)
..+...+.... .-....|-.-........+++.|+.+-++.++.+ +.+...+-.-...+...|+.++|.-.|+.....
T Consensus 286 ~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 286 SALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 77666665431 1123334444445566788888888888888753 234555555566788889999999888887763
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH-HHHHHcC--HHHHHHHHHHHHHCCCCCC-HH
Q 046719 584 GLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLL-SGCIREG--IVAVEKLFNEMLQINLVPD-LL 659 (808)
Q Consensus 584 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~~--~~~a~~~~~~~~~~~~~~~-~~ 659 (808)
. +-+...|..|+.+|...|++.+|.-+-+...+. ++.+..++..+. ..|.... -++|.+++++.++. .|+ ..
T Consensus 364 a-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~ 439 (564)
T KOG1174|consen 364 A-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTP 439 (564)
T ss_pred c-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHH
Confidence 2 236688999999999999999998887777653 455666666553 3344433 78999999998884 455 45
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA 728 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 728 (808)
..+.+...+...|..++++.++++.+. ..||....+.|+..+...+.+.+|.+.|..++. +.|+.
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 667788899999999999999999998 688999999999999999999999999999988 66753
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.7e-08 Score=96.93 Aligned_cols=462 Identities=12% Similarity=0.087 Sum_probs=245.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHH--HHHHH
Q 046719 137 INVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNV--LISGF 214 (808)
Q Consensus 137 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~ 214 (808)
+-+=++.+...|.+++|.....+++..++. |...+.-=+-++.+.+++++|+.+.+.-... .+++. +=.+|
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~~------~~~~~~~fEKAY 87 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGAL------LVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh------hhcchhhHHHHH
Confidence 344456677778888888888888877644 5555555566677888888888554433211 11111 23334
Q ss_pred H--ccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHccCChh
Q 046719 215 C--KEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEV-SLVMFNSLLGGFCKAKRME 291 (808)
Q Consensus 215 ~--~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 291 (808)
| +.++.++|+..++..-+. |..+...-...+.+.|++++|..+|+.+.+.+.+- +...-..++.+-.
T Consensus 88 c~Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a------ 157 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA------ 157 (652)
T ss_pred HHHHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH------
Confidence 3 778888888887722211 33355555667778888888888888886654321 1122222222111
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHH---HHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHH
Q 046719 292 EAKSVCKEMEAHGFDPDGFTYSM---LFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVG 368 (808)
Q Consensus 292 ~A~~~~~~m~~~g~~~~~~~~~~---ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 368 (808)
+.. -+.+......| ..+|.. ....+...|++.+|+++++...+.+.. .++ .++.. .+-+
T Consensus 158 -~l~-~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-----------~l~-~~d~~--eEei- 219 (652)
T KOG2376|consen 158 -ALQ-VQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICRE-----------KLE-DEDTN--EEEI- 219 (652)
T ss_pred -hhh-HHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------hhc-ccccc--hhhH-
Confidence 011 11122222222 223332 234455667777777777765332100 000 00000 0000
Q ss_pred HHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHH-HHHHHH-----
Q 046719 369 KEIENGLVPDE-VMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCIT----FNTLIDKFCELGEMD-KAEEWV----- 437 (808)
Q Consensus 369 ~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~-~A~~~~----- 437 (808)
.-+. .+-..+.-.+...|+.++|..++...+..... |... -|.|+..-....-++ .++..+
T Consensus 220 -------e~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~ 291 (652)
T KOG2376|consen 220 -------EEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVF 291 (652)
T ss_pred -------HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHH
Confidence 0000 12223444556677777777777777776543 3322 222322211111111 111111
Q ss_pred -------HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH-HhcCCHHHHHHHHHH
Q 046719 438 -------KRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWL-CKDCKLLEAEIVLKD 509 (808)
Q Consensus 438 -------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~~A~~~~~~ 509 (808)
..+... -......-+.++..|. +..+.+.++...... ..|....-+.+..+. ++.....++.+++..
T Consensus 292 ~l~~~~l~~Ls~~-qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~--~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~ 366 (652)
T KOG2376|consen 292 KLAEFLLSKLSKK-QKQAIYRNNALLALFT--NKMDQVRELSASLPG--MSPESLFPILLQEATKVREKKHKKAIELLLQ 366 (652)
T ss_pred HhHHHHHHHHHHH-HHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCc--cCchHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 111111 0001111223333332 334455554444322 233333333333332 233357778888877
Q ss_pred HHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046719 510 MENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFD--------EMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQIT 581 (808)
Q Consensus 510 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 581 (808)
.-+....-...+.-.++......|+++.|++++. .+.+.+. .+.+...+...+.+.++.+.|..++.+.+
T Consensus 367 ~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai 444 (652)
T KOG2376|consen 367 FADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAI 444 (652)
T ss_pred HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 7766444345566777788888999999999988 4444333 44556677777888888777888887765
Q ss_pred hC--CCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHH
Q 046719 582 SS--GLNPDV----ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEM 649 (808)
Q Consensus 582 ~~--~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~ 649 (808)
.. ...+.. .++..++..-.+.|+.++|..+++++.+.+ ++|..+...++.+|++...+.|..+-.++
T Consensus 445 ~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d~eka~~l~k~L 517 (652)
T KOG2376|consen 445 KWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLDPEKAESLSKKL 517 (652)
T ss_pred HHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcCHHHHHHHhhcC
Confidence 41 011111 233344444566788999999999988753 67788888888888888877777666553
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-09 Score=119.83 Aligned_cols=269 Identities=14% Similarity=0.041 Sum_probs=193.4
Q ss_pred CCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHH---------hcCChHHHHHHHHHhh
Q 046719 131 RLSLDSINVLLECLV-----RCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAV---------KIGDLKRACEIFDGME 196 (808)
Q Consensus 131 ~~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~ 196 (808)
+.+..+|...+++.. ..+.+++|..+|+++++..+. +...|..+..++. ..+++++|...+++++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 455665665555532 125689999999999987665 5666766665544 2345889999999999
Q ss_pred hCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHH
Q 046719 197 KSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVM 276 (808)
Q Consensus 197 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 276 (808)
+.++. +...+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...+++..+..+... ..
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~-~~ 408 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA-AA 408 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-hh
Confidence 87543 7778888888999999999999999999987533 567788899999999999999999999998755432 23
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHh
Q 046719 277 FNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCK 356 (808)
Q Consensus 277 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 356 (808)
+..++..+...|++++|+..++++.+...+-+...+..+..++...|+.++|...++++.... +.+....+.+...|+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence 333444566789999999999998765322245567778888999999999999999876552 2234455566667777
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 046719 357 EGKVEIAEEIVGKEIENG-LVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHG 409 (808)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 409 (808)
.| +.|...++.+.+.. -.+....+ +-..|.-.|+-+.+..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 47777777766532 11222223 44455566777777666 7777653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-09 Score=118.16 Aligned_cols=266 Identities=14% Similarity=0.059 Sum_probs=191.3
Q ss_pred CHhhHHHHHHHHHh-----cCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHH---------ccCCHhHHHHHHHHHHhC
Q 046719 168 DKFTYGKAVQAAVK-----IGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFC---------KEKKIRDAEKLFDEMCQR 233 (808)
Q Consensus 168 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~m~~~ 233 (808)
+...|...+++... .+++++|..+|++.++..+. +...|..+..++. ..+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 55555555554321 23468999999999986432 4556666655544 234589999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHH
Q 046719 234 KLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYS 313 (808)
Q Consensus 234 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 313 (808)
.+. +..++..+...+...|++++|...|++..+.++ .+...+..+...+...|++++|...+++..+.... +...+.
T Consensus 334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 544 778888898999999999999999999998753 35667888889999999999999999999987432 223334
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 046719 314 MLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTG 393 (808)
Q Consensus 314 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 393 (808)
.++..+...|++++|...++++.....+.+...+..+...+...|+.++|...+.++...... +....+.+...|+..|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH
Confidence 455567778999999999999887654445556777888899999999999999987665322 4455667777788888
Q ss_pred CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 046719 394 DLNRAMLAIQQMENHG-LAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEK 443 (808)
Q Consensus 394 ~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 443 (808)
++|...++.+.+.. ..+....+ +-..+.-.|+-+.+..+ +++.+.
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 47777777766531 11222222 33445556777777766 777765
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-07 Score=95.19 Aligned_cols=545 Identities=14% Similarity=0.140 Sum_probs=285.4
Q ss_pred CHhhHHHHHHH--HHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCC---------CC
Q 046719 168 DKFTYGKAVQA--AVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRK---------LV 236 (808)
Q Consensus 168 ~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---------~~ 236 (808)
|..|...++.. |+.-|+.+.|.+-.+-+. +..+|..+.+.|.+..+++-|.-.+..|.... -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 44555555543 556777777776666553 33567777777777777777666655553210 11
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 046719 237 PTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLF 316 (808)
Q Consensus 237 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 316 (808)
|+ .+-..+.......|..++|..+|++.++ |..|=+.|-..|.+++|.++-+.=-.. . =..||..-.
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHH
Confidence 22 2222333344578899999999998755 445566777889999999887543222 1 234566666
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 046719 317 DGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLN 396 (808)
Q Consensus 317 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 396 (808)
.-+-..+|.+.|++.|++.... .++ +.+++. .+....+...+++ .|...|.-....+-..|+.+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~h-------afe-v~rmL~--e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~Gemd 929 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVH-------AFE-VFRMLK--EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMD 929 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCCh-------HHH-HHHHHH--hChHHHHHHHHhc------cchHHHHHHHHHHhcccchH
Confidence 6667788899999888864322 111 111111 1112222222222 24556666666666788889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046719 397 RAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEME 476 (808)
Q Consensus 397 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 476 (808)
.|+.+|....+ |-++++..|-.|+.++|-++-++-- |....-.+...|-..|++.+|...|.+..
T Consensus 930 aAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 930 AALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88888887764 4566777788888888887766432 66666778888888888888888887764
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHH----------------HHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHH
Q 046719 477 NSGMKPNVVSYGSLINWLCKDCKLL----------------EAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFK 540 (808)
Q Consensus 477 ~~~~~~~~~~~~~ll~~~~~~~~~~----------------~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 540 (808)
. +..-|+ +|+.++++ .|..+|++.- . -....+..|-+.|.+.+|++
T Consensus 995 a---------fsnAIR-lcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALe 1056 (1416)
T KOG3617|consen 995 A---------FSNAIR-LCKENDMKDRLANLALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALE 1056 (1416)
T ss_pred H---------HHHHHH-HHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHH
Confidence 3 122222 22222222 2333333321 0 11223445666777766665
Q ss_pred HHHH--------HHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 046719 541 FFDE--------MVKRE--MGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLE 610 (808)
Q Consensus 541 ~~~~--------~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 610 (808)
+--+ ++..+ ...|+...+.-.+.++...++++|..++-...+ |...+.. |+.....-..+
T Consensus 1057 lAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alql-C~~~nv~vtee 1126 (1416)
T KOG3617|consen 1057 LAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQL-CKNRNVRVTEE 1126 (1416)
T ss_pred HHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHH-HhcCCCchhHH
Confidence 4221 11222 233566666666777777777777777665543 1111222 22222222222
Q ss_pred HHHHHHHC-CCCcCH----HhHHHHHHHHHHcC-HHHHHHHHHHH----------HHCCCCC----------CHHHHHHH
Q 046719 611 LYENMKKL-GIKPSL----RTYHPLLSGCIREG-IVAVEKLFNEM----------LQINLVP----------DLLVYNAL 664 (808)
Q Consensus 611 ~~~~~~~~-~~~p~~----~~~~~l~~~~~~~~-~~~a~~~~~~~----------~~~~~~~----------~~~~~~~l 664 (808)
+-+.|.-. .-.|+. ..+..+...|.+.| +..|.+-|.+. ++.|-.. ...+| .+
T Consensus 1127 ~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiY-Im 1205 (1416)
T KOG3617|consen 1127 FAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIY-IM 1205 (1416)
T ss_pred HHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceee-ee
Confidence 22222211 012222 23334445566666 66555544332 1111100 00011 11
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------------hcCCHhHHHHHHHHHHHCCCCCCHH
Q 046719 665 IHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHL---------------REGKLSEVKELVNDMKVKGLIPKAD 729 (808)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~---------------~~g~~~~A~~~~~~~~~~g~~p~~~ 729 (808)
..-|.+.-+|..--++.+.+.. +-.....+..|+..|. ..|-.++|...+.++..+.. ...
T Consensus 1206 AANyLQtlDWq~~pq~mK~I~t--FYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~~--~~t 1281 (1416)
T KOG3617|consen 1206 AANYLQTLDWQDNPQTMKDIET--FYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKNM--STT 1281 (1416)
T ss_pred hhhhhhhcccccChHHHhhhHh--hhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhcc--hHH
Confidence 1112222222222222222211 0000111222222221 23345556666665554321 111
Q ss_pred HHHHH----------HHHHH-ccCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 046719 730 TYNIL----------VKGYC-NLKDFGGAYIWYREMFENGFIP----SFCIYNELTNGLKQEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 730 ~~~~l----------~~~~~-~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 794 (808)
.++.| +.... -..|..+.++-...+++....| ....+..|++.+....+|++|.+.++++.++-|
T Consensus 1282 ~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p 1361 (1416)
T KOG3617|consen 1282 GLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVP 1361 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCC
Confidence 12222 11111 1235666666677777654333 346778889999999999999999999998776
Q ss_pred C
Q 046719 795 D 795 (808)
Q Consensus 795 ~ 795 (808)
.
T Consensus 1362 ~ 1362 (1416)
T KOG3617|consen 1362 N 1362 (1416)
T ss_pred c
Confidence 5
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-09 Score=105.55 Aligned_cols=199 Identities=14% Similarity=0.084 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHH
Q 046719 134 LDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISG 213 (808)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 213 (808)
...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...|++..+..+ .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 455666777777777777777777777665433 456666677777777777777777777776543 244566666777
Q ss_pred HHccCCHhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhH
Q 046719 214 FCKEKKIRDAEKLFDEMCQRKLV-PTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEE 292 (808)
Q Consensus 214 ~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 292 (808)
+...|++++|.+.|++....... .....+..+...+.+.|++++|...+++...... .+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777653211 1234555566666777777777777777665432 234455566666666777777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 046719 293 AKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELS 336 (808)
Q Consensus 293 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 336 (808)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777666654 22234444455555556666666665555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-09 Score=112.09 Aligned_cols=243 Identities=19% Similarity=0.200 Sum_probs=166.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHh-----CCC-C
Q 046719 520 QIYNMLIDGSCTMGRIKDAFKFFDEMVKR-----EM-GPTLV-TFNALINGLCKKGRVMEAEDMLPQITS-----SGL-N 586 (808)
Q Consensus 520 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~ 586 (808)
.+...+...|...|+++.|..+++..++. |. .|... ..+.+...|...+++++|..+|+++.. .|- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566778888888888888888877653 11 12222 233466677788888888888887764 121 1
Q ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 046719 587 PD-VITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDL-LVYNAL 664 (808)
Q Consensus 587 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l 664 (808)
|. ..+++.|...|.+.|++++|...++...+ ++++.... ..|+. ..++.+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~---------------------------I~~~~~~~-~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALE---------------------------IYEKLLGA-SHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHH---------------------------HHHHhhcc-ChHHHHHHHHHH
Confidence 22 24566777778888888888777776553 22221111 12232 345667
Q ss_pred HHHHHccCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CC--CC-CHHH
Q 046719 665 IHCYAEHGDVQKALVLHSEMVDQ---GIRPDK----MTYNSLIFGHLREGKLSEVKELVNDMKVK----GL--IP-KADT 730 (808)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~~~~~---g~~pd~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~--~p-~~~~ 730 (808)
+..|...+++++|..++++..+. -..++. -+++.|++.|...|++++|.+++++++.. +- .+ ....
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 77788889999999988877642 122222 27889999999999999999999998642 11 22 1345
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHH----CCCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMFE----NGFI-PS-FCIYNELTNGLKQEGKLKEAQILCSEIS 790 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 790 (808)
++.++..|.+.+++++|.++|.+... .|+. |+ ..+|..|+-.|.+.|++++|.++.+.+.
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 67888899999999999888888653 3442 22 4678899999999999999999999887
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-07 Score=98.36 Aligned_cols=126 Identities=13% Similarity=0.061 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 046719 383 NTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRM 462 (808)
Q Consensus 383 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (808)
.-+...|-..|++++|++.+++.++..+. .+..|..-...+-..|++.+|.+.++........ |...-+-.+..+.+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHC
Confidence 44455566666666666666666665322 3455666666666666666666666666655433 555555555666666
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--------hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046719 463 GHFDKCFQILEEMENSGMKPNV--------VSYGSLINWLCKDCKLLEAEIVLKDM 510 (808)
Q Consensus 463 g~~~~a~~~~~~m~~~~~~~~~--------~~~~~ll~~~~~~~~~~~A~~~~~~m 510 (808)
|++++|.+++......+..|-. +.......+|.+.|++..|++.|...
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666666666666544332211 11223344555666666555554444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.1e-10 Score=102.69 Aligned_cols=230 Identities=13% Similarity=0.016 Sum_probs=144.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhc
Q 046719 103 NILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKI 182 (808)
Q Consensus 103 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (808)
+-+.++|.+.|.+.+|.+.|...+.. .+-+++|..|.+.|.+-.++..|+.+|.+-++.-+. |+.....+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHHHHH
Confidence 34666677777777777777666553 344556667777777777777777777766654222 444444456666667
Q ss_pred CChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 046719 183 GDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALR 262 (808)
Q Consensus 183 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 262 (808)
++.++|.++|+.+.+.. .-++....++...|.-.++.+-|+..++++.+.|.. ++..|+.+.-+|.-.+.+|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 77777777777776653 235555556666666667777777777777777665 6666766666666667777777777
Q ss_pred HHHHhCCCCcC--HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 046719 263 ERMKRDKVEVS--LVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGR 338 (808)
Q Consensus 263 ~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 338 (808)
++....-..|+ ..+|-.+-...+..|++..|.+.|+-....+. .+...++.|.-.-.+.|++++|..++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 66655433232 23555566666666777777777766665432 24556666666666666666666666655544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.1e-09 Score=107.25 Aligned_cols=241 Identities=19% Similarity=0.194 Sum_probs=158.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCcchhH-HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC--CCC
Q 046719 488 GSLINWLCKDCKLLEAEIVLKDMENR-----G-VLPNAQI-YNMLIDGSCTMGRIKDAFKFFDEMVKR-----EM--GPT 553 (808)
Q Consensus 488 ~~ll~~~~~~~~~~~A~~~~~~m~~~-----~-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~ 553 (808)
..+...|...|++++|..+++...+. | ..|...+ .+.+...|...+++++|..+|++++.- |- +.-
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v 282 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV 282 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 33444555555555555555544332 1 1223332 334677888889999999998888752 21 112
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHh
Q 046719 554 LVTFNALINGLCKKGRVMEAEDMLPQITSS-----GL-NPDV-ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRT 626 (808)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 626 (808)
..+++.|...|.+.|++++|...++...+- |. .|.+ ..++.++..+...+++++|..+++...+
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~--------- 353 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK--------- 353 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH---------
Confidence 456777778899999999998888776541 11 1222 2345555566667777777777765443
Q ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC------CCCCC-HHHHHHH
Q 046719 627 YHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQ------GIRPD-KMTYNSL 699 (808)
Q Consensus 627 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~pd-~~~~~~l 699 (808)
++........+.-..+++.|...|...|++++|.+++++++.. +..+. ...++.|
T Consensus 354 ------------------i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 354 ------------------IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred ------------------HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 1111111111112468899999999999999999999998863 11222 3468899
Q ss_pred HHHHHhcCCHhHHHHHHHHHH----HCCC-CCC-HHHHHHHHHHHHccCChhHHHHHHHHHH
Q 046719 700 IFGHLREGKLSEVKELVNDMK----VKGL-IPK-ADTYNILVKGYCNLKDFGGAYIWYREMF 755 (808)
Q Consensus 700 ~~~~~~~g~~~~A~~~~~~~~----~~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 755 (808)
+..|.+.+++.+|.++|.+.. ..|. .|+ ..+|..|+..|..+|++++|.++.+.+.
T Consensus 416 a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 416 AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999999999999888854 2222 223 4668899999999999999999988876
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.4e-09 Score=105.18 Aligned_cols=240 Identities=14% Similarity=0.052 Sum_probs=152.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 046719 529 SCTMGRIKDAFKFFDEMVKRE-MGPT--LVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSS 605 (808)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 605 (808)
....+..+.++.-+.+++... ..|+ ...|..+...|...|+.++|...|++.++.. +.+...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence 334567788888888888642 1222 4557777778888889999988888888753 23567888888888888999
Q ss_pred HHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 046719 606 QKCLELYENMKKLGIKPS-LRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSE 683 (808)
Q Consensus 606 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 683 (808)
++|...|++..+. .|+ ..++..+...+...| +++|.+.|++.++.+ |+..........+...++.++|+..+++
T Consensus 115 ~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 115 DAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999888888864 344 556666666777777 888888888887753 3322111222233456778888888876
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC---C--CCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 684 MVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVK---G--LIP-KADTYNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 684 ~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
.... ..|+...+ .......|+..++ +.++.+.+. . +.| ....|..++..+.+.|++++|+.+|+++++.
T Consensus 191 ~~~~-~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEK-LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhh-CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6543 23333221 2333334555443 244444321 1 111 2356778888888888888888888888877
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 046719 758 GFIPSFCIYNELTNGLKQEGK 778 (808)
Q Consensus 758 ~~~~~~~~~~~l~~~l~~~g~ 778 (808)
++....++...+++.....++
T Consensus 266 ~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 266 NVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred CCchHHHHHHHHHHHHHHHhh
Confidence 654345555555555444333
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-07 Score=94.07 Aligned_cols=236 Identities=13% Similarity=0.117 Sum_probs=165.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-------HH
Q 046719 522 YNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITY-------NS 594 (808)
Q Consensus 522 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~ 594 (808)
...+.++..+..+++.|++-++..++.. -+..-++....+|...|.+.+.....+..++.|-. ...-| ..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 5667777888888999999998888764 35556677777888888888888887777765532 11222 22
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC
Q 046719 595 LISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDL-LVYNALIHCYAEHG 672 (808)
Q Consensus 595 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 672 (808)
+..+|.+.++++.++..|.+....-..|+..+ +.. .+++.+..+...- +.|+. .---.-.+.+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhcc
Confidence 44466778889999999998765433333211 112 3334433333322 23332 11122256778899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHH
Q 046719 673 DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWY 751 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 751 (808)
++..|+..|.++++.. +-|...|...+.+|.+.|.+..|+.=.+..++ +.|+ ...|.--+.++..+.+|++|.+.|
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999963 44666899999999999999999999999988 4565 566777788888899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh
Q 046719 752 REMFENGFIPSFCIYNELTNGLKQ 775 (808)
Q Consensus 752 ~~~~~~~~~~~~~~~~~l~~~l~~ 775 (808)
++.++.++. +......+.+++..
T Consensus 450 ~eale~dp~-~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 450 QEALELDPS-NAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHhcCch-hHHHHHHHHHHHHH
Confidence 999998765 55655555555544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.2e-11 Score=83.39 Aligned_cols=49 Identities=51% Similarity=0.955 Sum_probs=23.6
Q ss_pred CChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046719 202 PNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYC 250 (808)
Q Consensus 202 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 250 (808)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.9e-11 Score=82.44 Aligned_cols=50 Identities=44% Similarity=0.850 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 046719 237 PTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCK 286 (808)
Q Consensus 237 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 286 (808)
||.++||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777777777777777777777777777777777777777777777653
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-08 Score=90.14 Aligned_cols=202 Identities=13% Similarity=0.037 Sum_probs=135.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 046719 592 YNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAE 670 (808)
Q Consensus 592 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 670 (808)
...|.-.|...|+...|..-+++.++.. +.+..++..+...|.+.| .+.|.+.|++.++.. +.+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3344445555555555555555555532 223445555555555555 556666666655542 3445677778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHH
Q 046719 671 HGDVQKALVLHSEMVDQGIRPDK-MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAY 748 (808)
Q Consensus 671 ~g~~~~A~~~~~~~~~~g~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 748 (808)
.|++++|...|+++.+...-|.. .+|..++.+..+.|+.+.|..++++.++ ..| .+.+...+.....+.|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHH
Confidence 88888888888888874322322 3777888888888888888888888887 445 3566677788888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 749 IWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.++++....+. ++...+-..++.-...|+...|-++=..+...-|....
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 88888777665 57777777777777888877777776666655555443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-08 Score=100.72 Aligned_cols=93 Identities=15% Similarity=0.010 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 046719 592 YNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAE 670 (808)
Q Consensus 592 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 670 (808)
|..+...|...|+.++|...|++..+.. +.+...|+.+...+...| +++|.+.|++.++.. +.+...|..++.++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4444444455555555555555554421 222444444444445555 555555555554432 1123344444444445
Q ss_pred cCCHHHHHHHHHHHHH
Q 046719 671 HGDVQKALVLHSEMVD 686 (808)
Q Consensus 671 ~g~~~~A~~~~~~~~~ 686 (808)
.|++++|++.+++..+
T Consensus 145 ~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ 160 (296)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.9e-08 Score=95.73 Aligned_cols=226 Identities=16% Similarity=0.141 Sum_probs=167.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH----
Q 046719 557 FNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLS---- 632 (808)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~---- 632 (808)
...+.++..+..++..|++-+....+.. -+..-++....+|...|.+.++........+.|- ....-|+.+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 4566777778888899999888888753 3555566777788899999888888887776542 22222333333
Q ss_pred ---HHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC
Q 046719 633 ---GCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREG 707 (808)
Q Consensus 633 ---~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g 707 (808)
++.+.+ ++.+...|.+.+.....|+ ...+....+++++..+...- +.|+.. --..-+..+++.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhcc
Confidence 344445 6677777777655433332 22334456666666666554 445443 2334588899999
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 046719 708 KLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCS 787 (808)
Q Consensus 708 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~ 787 (808)
++..|+..+.++++.. +.|...|...+-+|.+.|.+.+|++-.+..++.++. ....|.+=+.++....+|++|...|.
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999864 346888999999999999999999999999999766 78889888999999999999999999
Q ss_pred HHHHcCCCCCc
Q 046719 788 EISIVGKDAWT 798 (808)
Q Consensus 788 ~~~~~~~~~~~ 798 (808)
+.++.+|++-.
T Consensus 451 eale~dp~~~e 461 (539)
T KOG0548|consen 451 EALELDPSNAE 461 (539)
T ss_pred HHHhcCchhHH
Confidence 99999877654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-06 Score=82.38 Aligned_cols=247 Identities=12% Similarity=0.133 Sum_probs=121.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 046719 529 SCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKC 608 (808)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 608 (808)
+...|+...|+.....+++- .+.+...+..-..+|...|++..|+.-+....+.. ..+..+.-.+-..+...|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHH
Confidence 34455556666666555553 23345555555556666666666655555444321 22334444444455555666666
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 046719 609 LELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQG 688 (808)
Q Consensus 609 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 688 (808)
+...++..+ +.||..........+.+ ..+.++. +....+.++|.++++..+...+.
T Consensus 243 L~~iRECLK--ldpdHK~Cf~~YKklkK-----v~K~les----------------~e~~ie~~~~t~cle~ge~vlk~- 298 (504)
T KOG0624|consen 243 LKEIRECLK--LDPDHKLCFPFYKKLKK-----VVKSLES----------------AEQAIEEKHWTECLEAGEKVLKN- 298 (504)
T ss_pred HHHHHHHHc--cCcchhhHHHHHHHHHH-----HHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhc-
Confidence 655555554 24544332221111110 0000000 11123345555555555555553
Q ss_pred CCCCH--H---HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC
Q 046719 689 IRPDK--M---TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPS 762 (808)
Q Consensus 689 ~~pd~--~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 762 (808)
.|.. + .+..+-.++...|++.+|++...+.++ +.|+ ..++.--+.+|.-...+++|+.-|+++.+.+.. +
T Consensus 299 -ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s-n 374 (504)
T KOG0624|consen 299 -EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES-N 374 (504)
T ss_pred -CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc-c
Confidence 2321 1 222344455555666666666666655 4443 555555566666666666666666666655443 3
Q ss_pred HHHHHHHH-----------------HHHHhcCChhHHHHHHHHHHHc-CCCCCchhh-hHhh
Q 046719 763 FCIYNELT-----------------NGLKQEGKLKEAQILCSEISIV-GKDAWTNED-QSAV 805 (808)
Q Consensus 763 ~~~~~~l~-----------------~~l~~~g~~~~A~~~~~~~~~~-~~~~~~~~~-~~~~ 805 (808)
..+-..+- -+-.+.-...|..+.|+++-++ .|+|+.++. .+-.
T Consensus 375 ~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkA 436 (504)
T KOG0624|consen 375 TRAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKA 436 (504)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHH
Confidence 22222111 1122334556778888877665 588888554 4433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6e-09 Score=92.76 Aligned_cols=164 Identities=15% Similarity=0.078 Sum_probs=143.9
Q ss_pred HHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 046719 627 YHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHL 704 (808)
Q Consensus 627 ~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~ 704 (808)
...|.-+|...| ...|.+-+++.++.+ +.+..+|..+...|.+.|..+.|.+.|+++++ +.|+ ..+.|..++.+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHH
Confidence 444566788889 999999999999975 45568899999999999999999999999998 5664 458999999999
Q ss_pred hcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 046719 705 REGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQ 783 (808)
Q Consensus 705 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~ 783 (808)
..|++++|...|+++.....-+ -..+|..++.|..++|+++.|.++|++.++.++. .+.....++....+.|++-+|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 9999999999999998743333 2678999999999999999999999999999887 6777889999999999999999
Q ss_pred HHHHHHHHcCC
Q 046719 784 ILCSEISIVGK 794 (808)
Q Consensus 784 ~~~~~~~~~~~ 794 (808)
-++++....++
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99999987766
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.6e-07 Score=82.63 Aligned_cols=351 Identities=14% Similarity=0.062 Sum_probs=211.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHH-HHHHHH
Q 046719 137 INVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNV-LISGFC 215 (808)
Q Consensus 137 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 215 (808)
+.+++..+.+..++++|++++..-.+..++ +....+.+..+|....++..|...|+++-... |...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 567777778888899999888877776554 67777888888888889999999999887643 33333322 234455
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHH
Q 046719 216 KEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVD--GYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEA 293 (808)
Q Consensus 216 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 293 (808)
+.+.+.+|+.+...|... |+...-..-+. .....+++-.+..++++... +.+..+.+.......+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHH
Confidence 778888898888877643 22222222222 23356788888888887632 23444555555556688899999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcH----HHHHHHHHhcCChHHHHHHHHH
Q 046719 294 KSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTC----SILLNALCKEGKVEIAEEIVGK 369 (808)
Q Consensus 294 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~ 369 (808)
.+-|+...+.+--.....|+.- -+..+.|+++.|++...+++++|++..+..- ...+++- .-|+ ...+...
T Consensus 164 vqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgN---t~~lh~S 238 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGN---TLVLHQS 238 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccc---hHHHHHH
Confidence 9988888775443345556543 3455678888888888888888764322110 0000000 0000 0000000
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 046719 370 EIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENH-GLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPN 448 (808)
Q Consensus 370 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 448 (808)
. -+..+|.-...+.+.|+++.|.+.+-.|.-+ ....|++|...+.-.-. .+++....+-+.-+....+ -.
T Consensus 239 a-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP 309 (459)
T KOG4340|consen 239 A-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FP 309 (459)
T ss_pred H-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CC
Confidence 0 1123455555677889999999888887532 23447777665543322 3455555555566665543 34
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 046719 449 VKTNNTLIDGYGRMGHFDKCFQILEEMENSGMK-PNVVSYGSLINWLC-KDCKLLEAEIVLKDME 511 (808)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~-~~~~~~~A~~~~~~m~ 511 (808)
..|+..++-.||+..-++-|-+++.+-...-.. .+...|+ +++++. .....++|.+-++.+.
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 568888888999999999998888763221111 1222333 333333 3445666666555443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-06 Score=81.83 Aligned_cols=194 Identities=13% Similarity=0.127 Sum_probs=133.7
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 046719 598 GYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQK 676 (808)
Q Consensus 598 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 676 (808)
.+...|+...|++....+++. .+.|...+..-..+|...| ...|..-++...+.. ..+...+..+...+..-|+.+.
T Consensus 164 s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHH
Confidence 344566777777777777663 2345555555556666666 666666555555432 2233444555666677777777
Q ss_pred HHHHHHHHHHCCCCCCHHH----HHHH---------HHHHHhcCCHhHHHHHHHHHHHCCCCCC--H---HHHHHHHHHH
Q 046719 677 ALVLHSEMVDQGIRPDKMT----YNSL---------IFGHLREGKLSEVKELVNDMKVKGLIPK--A---DTYNILVKGY 738 (808)
Q Consensus 677 A~~~~~~~~~~g~~pd~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~---~~~~~l~~~~ 738 (808)
++...++.++ +.||... |..| +......++|.++++..++.++. .|. . ..+..+..++
T Consensus 242 sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 242 SLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecc
Confidence 7777777776 5666431 2111 12344677888888888888774 443 2 2344666777
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 739 CNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 739 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
...|++.+|+....++++..++ |..++.--+++|.-...+++|+.-|+++.+.++++-.
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 8899999999999999987665 7999999999999999999999999999998887655
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-06 Score=91.39 Aligned_cols=195 Identities=13% Similarity=0.017 Sum_probs=108.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHh
Q 046719 104 ILLSILSSAKLPSEALQLYASTKADGT-RLSL-DSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVK 181 (808)
Q Consensus 104 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (808)
.+...+...|+++++...+....+... ..+. .........+...|++++|...++++++..+. |...+.. ...+..
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~~~~~ 88 (355)
T cd05804 11 AAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HLGAFG 88 (355)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hHHHHH
Confidence 344445555666666555555443222 1222 22333444566677888888888877776444 3434432 112222
Q ss_pred ----cCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 046719 182 ----IGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEK 257 (808)
Q Consensus 182 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 257 (808)
.|..+.+.+.+..... ....+......+...+...|++++|...+++..+..+. +...+..+...|...|++++
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 89 LGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred hcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHH
Confidence 3444444444443111 11122333445556667777788888887777776432 45566777777777777777
Q ss_pred HHHHHHHHHhCCCC-cCH--HHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 258 VSALRERMKRDKVE-VSL--VMFNSLLGGFCKAKRMEEAKSVCKEMEA 302 (808)
Q Consensus 258 a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 302 (808)
|...+++....... ++. ..|..+...+...|++++|..++++...
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77777776654321 222 2344566667777777777777777643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-06 Score=89.97 Aligned_cols=200 Identities=12% Similarity=0.026 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cCHh-hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHH
Q 046719 134 LDSINVLLECLVRCNQYDRALDLFDEIVCMGFR-PDKF-TYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLI 211 (808)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 211 (808)
.-.+..+...+...|+++.+...+....+.... ++.. ........+...|++++|..++++..+..+. +...++. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-h
Confidence 445667777777788888887777776654332 2222 2222333466789999999999998876432 4444442 2
Q ss_pred HHHH----ccCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 046719 212 SGFC----KEKKIRDAEKLFDEMCQRKLVPT-RVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCK 286 (808)
Q Consensus 212 ~~~~----~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 286 (808)
..+. ..+....+.+.+... ....|+ ......+...+...|++++|...+++..+..+ .+...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHH
Confidence 2222 244555555555441 112233 33445566778889999999999999888643 345677788888888
Q ss_pred cCChhHHHHHHHHHHHCCC-CCCH--hhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 046719 287 AKRMEEAKSVCKEMEAHGF-DPDG--FTYSMLFDGYSKCGDGEGVMALYEELSGR 338 (808)
Q Consensus 287 ~g~~~~A~~~~~~m~~~g~-~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 338 (808)
.|++++|...+++..+... .|+. ..|..+...+...|++++|..++++....
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 9999999999888876422 1222 23556778888888888888888887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.6e-08 Score=98.30 Aligned_cols=143 Identities=18% Similarity=0.140 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHH
Q 046719 639 IVAVEKLFNEMLQ-INLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEVKELV 716 (808)
Q Consensus 639 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~ 716 (808)
.....++|-++.. .+..+|..+...|.-.|--.|++++|+..|+.++. ++|+ ...||.|+..+....+.++|+..|
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 3445566666654 34347888899999999999999999999999998 6774 559999999999999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCC---------CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 046719 717 NDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENG---------FIPSFCIYNELTNGLKQEGKLKEAQIL 785 (808)
Q Consensus 717 ~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~l~~~l~~~g~~~~A~~~ 785 (808)
+++++ +.|+ ...+..|+-+|...|.|++|.+.|-+++... +.++..+|..|=.++...++.+-+...
T Consensus 488 ~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 488 NRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 99999 7887 4567788889999999999999999987532 222345777777788888887755544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.9e-05 Score=76.72 Aligned_cols=186 Identities=16% Similarity=0.162 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 046719 430 MDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMG---HFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIV 506 (808)
Q Consensus 430 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 506 (808)
.+++..+++..+..-...+..+|..+.+.--..- +.+.....++++...-...-..+|..+++...+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455556655544322223334443333211111 2455556666665433333345677788888888888888888
Q ss_pred HHHHHhCCCCc-chhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 046719 507 LKDMENRGVLP-NAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGL 585 (808)
Q Consensus 507 ~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 585 (808)
|.++.+.+..+ ++.++++++.-+|. ++.+-|.++|+.-+++ +..++.-....++-+...++-..+..+|++.+..++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 88888876666 66677777777664 6777888888877765 444555556777778888888888888888887755
Q ss_pred CCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 046719 586 NPD--VITYNSLISGYSSLGSSQKCLELYENMKK 617 (808)
Q Consensus 586 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 617 (808)
.++ ...|..+++.-..-|+...++++-+++..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 554 36788888888888888888887776664
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-08 Score=99.99 Aligned_cols=227 Identities=15% Similarity=0.053 Sum_probs=117.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH-HHHH
Q 046719 557 FNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLL-SGCI 635 (808)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~ 635 (808)
...+.+++...|+++.++ .++.... .|.......+...+...++.+.++.-+++.......++..++..+. ..+.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 334445555556554332 2222221 4444444444443333334444444443333222221222222211 2233
Q ss_pred HcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcC--CHhH
Q 046719 636 REG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMT-YNSLIFGHLREG--KLSE 711 (808)
Q Consensus 636 ~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~-~~~l~~~~~~~g--~~~~ 711 (808)
..| +++|.+++.+. .+.......+.+|.+.++++.|.+.++.|.+ +..|... -..-.|.....| .+.+
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHHHHHHHHHHHHHHHTTTCCCH
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHhCchhHHH
Confidence 445 66666655432 2344555566777777777777777777766 3444442 222223332333 5777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHH
Q 046719 712 VKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKL-KEAQILCSEIS 790 (808)
Q Consensus 712 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~-~~A~~~~~~~~ 790 (808)
|..+|+++.+. ..+++.+.+.++.++...|++++|.+.++++++.++. ++.++..++.+....|+. +.+.+++.++.
T Consensus 186 A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 186 AFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 77777776553 4456667777777777777777777777777766655 666666777776777776 55666777776
Q ss_pred HcCCCCC
Q 046719 791 IVGKDAW 797 (808)
Q Consensus 791 ~~~~~~~ 797 (808)
...|++.
T Consensus 264 ~~~p~h~ 270 (290)
T PF04733_consen 264 QSNPNHP 270 (290)
T ss_dssp HHTTTSH
T ss_pred HhCCCCh
Confidence 6666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.9e-07 Score=81.49 Aligned_cols=289 Identities=13% Similarity=0.050 Sum_probs=134.3
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHH-HHHHHHHhc
Q 046719 279 SLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCS-ILLNALCKE 357 (808)
Q Consensus 279 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~ 357 (808)
+++..+.+..++++|++++..-.+.... +....+.|..+|....++..|...|+++....++ ..-|. .-...+.+.
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~--~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE--LEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH--HHHHHHHHHHHHHHh
Confidence 3333444445555555555544443211 3344445555555555555555555555443211 11111 112333445
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 046719 358 GKVEIAEEIVGKEIENGLVPDEVMFNTIVS--GYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEE 435 (808)
Q Consensus 358 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 435 (808)
+.+.+|.++...|.+. ++...-..-+. .....+++..+..++++....| +..+.+.......+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 5555555555554431 11111011111 1123455555555555544221 33344444444455566666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----------------------------hhH
Q 046719 436 WVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNV----------------------------VSY 487 (808)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~----------------------------~~~ 487 (808)
-|+...+-+--.....|+.-+. ..+.|+++.|++...++.++|++..+ ..+
T Consensus 166 kFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 6665555322223344544433 23445566666666666555432111 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC-CCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 046719 488 GSLINWLCKDCKLLEAEIVLKDMENRG-VLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCK 566 (808)
Q Consensus 488 ~~ll~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 566 (808)
|.-...+.+.++++.|.+.+..|.-+. ...|++|...+.-.- ..+++.+..+-+.-++.... ....||..++-.||+
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCK 322 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhh
Confidence 222223445666777776666664331 233556555443221 23444444444555554422 345677777777777
Q ss_pred cCChHHHHHHHHH
Q 046719 567 KGRVMEAEDMLPQ 579 (808)
Q Consensus 567 ~g~~~~A~~~~~~ 579 (808)
+.-++.|.+++.+
T Consensus 323 Neyf~lAADvLAE 335 (459)
T KOG4340|consen 323 NEYFDLAADVLAE 335 (459)
T ss_pred hHHHhHHHHHHhh
Confidence 7777777666654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.4e-05 Score=75.11 Aligned_cols=186 Identities=8% Similarity=0.063 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 046719 535 IKDAFKFFDEMVKREMGPTLVTFNALINGLCKKG---RVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLEL 611 (808)
Q Consensus 535 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 611 (808)
.+++..++++.+..-...+..+|..+.+.--..- +.+....+++++...-..--..+|..+++...+..-++.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4556666666655433334444444443221111 2555666666666532122235677788888888888889999
Q ss_pred HHHHHHCCCCc-CHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 046719 612 YENMKKLGIKP-SLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIR 690 (808)
Q Consensus 612 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 690 (808)
|.+..+.+..+ ...+..+++.-++..+.+.|.++|+--+++ ...+...-...++-+...++-..|..+|++.+..++.
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 99888877666 667778888888887788888888876654 2344455566777778888888899999998887777
Q ss_pred CCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 691 PDK--MTYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 691 pd~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
||. .+|..++.--+.-|+.+.+.++-++...
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 665 3888888888888988888888777643
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=0.00011 Score=87.61 Aligned_cols=335 Identities=11% Similarity=-0.008 Sum_probs=195.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CCCH--HHHHHHHHHH
Q 046719 388 GYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGV------SPNV--KTNNTLIDGY 459 (808)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~--~~~~~l~~~~ 459 (808)
.....|+++.+...++.+.......+..........+...|+++++..++......-. .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677776666665542111111222223334445667888888888877654310 1111 1122233455
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CcchhHHHHHHHHHH
Q 046719 460 GRMGHFDKCFQILEEMENSGMKPNV----VSYGSLINWLCKDCKLLEAEIVLKDMENR----GV-LPNAQIYNMLIDGSC 530 (808)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~-~~~~~~~~~li~~~~ 530 (808)
...|++++|...+++....-...+. ...+.+...+...|++++|...+.+.... |. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6788899988888887653111121 23455556677788999888888777542 11 111234455666778
Q ss_pred hcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHH
Q 046719 531 TMGRIKDAFKFFDEMVKR----EMG--P-TLVTFNALINGLCKKGRVMEAEDMLPQITSS--GLNP--DVITYNSLISGY 599 (808)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~--~~~~~~~l~~~~ 599 (808)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 889999998888877652 211 1 1233445556677789999998888877542 1112 133445566677
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCc-CHHhHH-----HHHHHHHHcC-HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 046719 600 SSLGSSQKCLELYENMKKLGIKP-SLRTYH-----PLLSGCIREG-IVAVEKLFNEMLQINLVPD---LLVYNALIHCYA 669 (808)
Q Consensus 600 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~-----~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 669 (808)
...|++++|...+.+........ ....+. ..+..+...| .+.+.+++........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 78899999988888775421111 111110 1112233455 7777777666443211111 112345667778
Q ss_pred ccCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046719 670 EHGDVQKALVLHSEMVDQ----GIRPDK-MTYNSLIFGHLREGKLSEVKELVNDMKVK 722 (808)
Q Consensus 670 ~~g~~~~A~~~~~~~~~~----g~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 722 (808)
..|++++|...++++.+. |..++. .++..++.++...|+.++|...+.++.+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888889998888887653 322222 25667778888889999998888888764
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.94 E-value=0.00016 Score=77.71 Aligned_cols=235 Identities=14% Similarity=0.104 Sum_probs=145.6
Q ss_pred hhhhHHHHHHHHhCCCchHHHHHHHHHHhcCCCCCCChhhHHhhhhccCCCCCccHHHHHHHH--HHcCCChhHHHHHHH
Q 046719 46 RNEQVRKIRILFQNNRTEAAQSLIKSIVLSNASPFTSPHELFSLFSVSSPYYKPTFTNILLSI--LSSAKLPSEALQLYA 123 (808)
Q Consensus 46 ~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 123 (808)
.+.+.+.|--++..+++..|....++++.+.|+. + ....+.+ +.+.|+.++|..+++
T Consensus 9 ~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~-------------------~--~a~vLkaLsl~r~gk~~ea~~~Le 67 (932)
T KOG2053|consen 9 SERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNA-------------------L--YAKVLKALSLFRLGKGDEALKLLE 67 (932)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCc-------------------H--HHHHHHHHHHHHhcCchhHHHHHh
Confidence 3456777888889999999999988888776521 1 1122333 568899999998887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC
Q 046719 124 STKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPN 203 (808)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 203 (808)
.....+.. |..+...+-.+|.+.++.++|..+|+++... .|+......+..+|+|-+.+..-.+.--++-+. .+-+
T Consensus 68 ~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~ 143 (932)
T KOG2053|consen 68 ALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKR 143 (932)
T ss_pred hhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcc
Confidence 77655544 7788999999999999999999999999875 445777777888888888776533333333332 1223
Q ss_pred hhhHHHHHHHHHccCC----------HhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHH-HHHhCCCC
Q 046719 204 VFVYNVLISGFCKEKK----------IRDAEKLFDEMCQRK-LVPTRVTYNTLVDGYCKVGEFEKVSALRE-RMKRDKVE 271 (808)
Q Consensus 204 ~~~~~~l~~~~~~~g~----------~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~ 271 (808)
...+=++++.+.+.-. +.-|.+.++.+.+.+ ..-+..-...-...+-..|++++|.+++. ...+.-..
T Consensus 144 ~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~ 223 (932)
T KOG2053|consen 144 AYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTS 223 (932)
T ss_pred cchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccc
Confidence 3333344444433211 223455555555543 11122222222344456777777777773 33332233
Q ss_pred cCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 272 VSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGF 305 (808)
Q Consensus 272 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 305 (808)
-+...-+--+..+...+++.+..++-.++...|.
T Consensus 224 ~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 224 ANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred cchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 3444444555666667777777777777776653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.5e-08 Score=99.93 Aligned_cols=217 Identities=18% Similarity=0.142 Sum_probs=122.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHc
Q 046719 558 NALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIRE 637 (808)
Q Consensus 558 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 637 (808)
..+...+...|-...|..+|+++- .|.-.|.+|...|+..+|.++..+-.++ +|++..|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 344444555555555555555433 3444455555555555555555554441 45555555555554444
Q ss_pred C-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHH
Q 046719 638 G-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKEL 715 (808)
Q Consensus 638 ~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~ 715 (808)
. ++.|.++++..... .-..+.....+.++++++.+.|+...+ +.| -..+|..++.+..+.++++.|.+.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 4 55555555443221 011111122335667777777776666 333 333666666666777777777777
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 046719 716 VNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 716 ~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 794 (808)
|...+. ..|| ...|+.+..+|.+.|+..+|...++++++.+.+ +..+|........+-|.+++|++.+.++.+.+.
T Consensus 542 F~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 542 FHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 777665 4554 455777777777777777777777777766644 556666666666667777777777776666554
Q ss_pred CCC
Q 046719 795 DAW 797 (808)
Q Consensus 795 ~~~ 797 (808)
+..
T Consensus 619 ~~~ 621 (777)
T KOG1128|consen 619 KYK 621 (777)
T ss_pred hcc
Confidence 433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.92 E-value=0.00019 Score=77.16 Aligned_cols=116 Identities=17% Similarity=0.204 Sum_probs=64.6
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChH
Q 046719 109 LSSAKLPSEALQLYASTKADGTRLSLDSINVLLE--CLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLK 186 (808)
Q Consensus 109 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 186 (808)
....+.+..|+...+.+.+.. |+.. +..++. .+.|.|+.++|..+++..-..+.. |..|...+...|.+.|.++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 345566666766666665542 2322 222222 345666677776555544333333 6666666666666677777
Q ss_pred HHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHH
Q 046719 187 RACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEM 230 (808)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 230 (808)
+|..+|++..+. .|+......+..+|.+.+++.+-.+.=-+|
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~L 136 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQL 136 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766654 344555556666666666665444433333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.2e-08 Score=85.95 Aligned_cols=98 Identities=13% Similarity=-0.004 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046719 698 SLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQE 776 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 776 (808)
.++..+...|++++|...|++++. +.| +...|..++.++...|++++|+..|+++++.+|. +...+..++.++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHc
Confidence 445555555555555555555555 333 3445555555555555555555555555555544 555555555555555
Q ss_pred CChhHHHHHHHHHHHcCCCCCc
Q 046719 777 GKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 777 g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
|+.++|+..+++++...|++..
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADAS 127 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChH
Confidence 5555555555555555555544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-05 Score=95.49 Aligned_cols=374 Identities=10% Similarity=-0.001 Sum_probs=167.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 046719 382 FNTIVSGYCRTGDLNRAMLAIQQMENHGLAPN-CITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYG 460 (808)
Q Consensus 382 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (808)
.......+...|++.+|.......... +. ..............|+++.+..++..+.......+..........+.
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 344455566677777666544433111 00 00111122233445666666666554421101111222233344455
Q ss_pred hcCChHHHHHHHHHHHHCCCC------CC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcch----hHHHHHHHH
Q 046719 461 RMGHFDKCFQILEEMENSGMK------PN--VVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNA----QIYNMLIDG 528 (808)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~~~~------~~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~ 528 (808)
..|+++++..++.+....--. +. ......+...+...|++++|...++.....-...+. ...+.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 667777777777665432100 01 111111223344566777777766665542111111 123444455
Q ss_pred HHhcCCHHHHHHHHHHHHHcC--C-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCC--C-CHHHHHHHH
Q 046719 529 SCTMGRIKDAFKFFDEMVKRE--M-GP--TLVTFNALINGLCKKGRVMEAEDMLPQITS----SGLN--P-DVITYNSLI 596 (808)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~--~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~--~-~~~~~~~l~ 596 (808)
+...|++++|...+++..... . .+ ...++..+...+...|++++|...+++... .+.. + ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 556677777766666665320 0 01 122334445556666777777666666543 1111 0 112233444
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCC--CCcC--HHhHHHHHHHHHHcC-HHHHHHHHHHHHHCC--CCCCHH--H--HHHHH
Q 046719 597 SGYSSLGSSQKCLELYENMKKLG--IKPS--LRTYHPLLSGCIREG-IVAVEKLFNEMLQIN--LVPDLL--V--YNALI 665 (808)
Q Consensus 597 ~~~~~~g~~~~A~~~~~~~~~~~--~~p~--~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~--~~~~~~--~--~~~l~ 665 (808)
..+...|++++|...+.+..... ..+. ...+..+.......| .++|.+.+.++.... ...... . ....+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 44555666666666666654321 1111 112222333344455 666666655554310 000000 0 00111
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCC-HHHHHHHHHH
Q 046719 666 HCYAEHGDVQKALVLHSEMVDQGIRPDK---MTYNSLIFGHLREGKLSEVKELVNDMKVK----GLIPK-ADTYNILVKG 737 (808)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~~~~~g~~pd~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~ 737 (808)
..+...|+.+.|...+............ ..+..++.++...|++++|...++++... |..++ ..+...++.+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 2233456666666665544321100010 01234555556666666666666665432 11111 2234455555
Q ss_pred HHccCChhHHHHHHHHHHHCC
Q 046719 738 YCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~~~~ 758 (808)
+.+.|+.++|...+.++++..
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 666666666666666666554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.4e-06 Score=85.16 Aligned_cols=219 Identities=13% Similarity=0.133 Sum_probs=143.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC---HH
Q 046719 566 KKGRVMEAEDMLPQITSSGLNP-DVITYNSLISGYSSLG-SSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG---IV 640 (808)
Q Consensus 566 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~ 640 (808)
..++.++|+.+..++++. .| +..+|+.....+...| .+++++..++++.+.. +.+..+|+.....+.+.| .+
T Consensus 49 ~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 49 SDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred cCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence 345666777777776664 33 3345555555555555 4677777777777642 334445554444444444 25
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH----hHHH
Q 046719 641 AVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLRE---GKL----SEVK 713 (808)
Q Consensus 641 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~---g~~----~~A~ 713 (808)
++..+++++++.+ +.+...|+....++...|++++|++.++++++.+ +-|...|+....++.+. |.+ ++++
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 6677777777754 4567788888888888888888999888888853 22555777777666654 222 4677
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHcc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----------
Q 046719 714 ELVNDMKVKGLIP-KADTYNILVKGYCNL----KDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG----------- 777 (808)
Q Consensus 714 ~~~~~~~~~g~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g----------- 777 (808)
.+..++++ ..| |...|..+...+... ++..+|.+...+..+.++. +...+..|+..|....
T Consensus 204 ~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~ 280 (320)
T PLN02789 204 KYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVD 280 (320)
T ss_pred HHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhh
Confidence 77777776 445 567788777777763 4456788888887776655 6777778888887632
Q ss_pred -------ChhHHHHHHHHHHHc
Q 046719 778 -------KLKEAQILCSEISIV 792 (808)
Q Consensus 778 -------~~~~A~~~~~~~~~~ 792 (808)
..++|.++++.+.+.
T Consensus 281 ~~~~~~~~~~~a~~~~~~l~~~ 302 (320)
T PLN02789 281 TLAEELSDSTLAQAVCSELEVA 302 (320)
T ss_pred ccccccccHHHHHHHHHHHHhh
Confidence 346788888887443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.5e-07 Score=90.39 Aligned_cols=249 Identities=14% Similarity=0.102 Sum_probs=171.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 046719 494 LCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEA 573 (808)
Q Consensus 494 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 573 (808)
+.+.|++.+|.-.|+...+.++. +...|.-|.......++-..|+..+.+.++.. +.|......|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 45566666777777776666433 66677777777777777777777777777653 33566677777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH---------HHHHcCCCHHHHHHHHHHHH-HCCCCcCHHhHHHHHHHHHHcC-HHHH
Q 046719 574 EDMLPQITSSGLNPDVITYNSLI---------SGYSSLGSSQKCLELYENMK-KLGIKPSLRTYHPLLSGCIREG-IVAV 642 (808)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~~-~~~a 642 (808)
+++++.-+...++ . .|.... ..+..........++|-++. ..+..+|+.+...|.-.|--.| ++.|
T Consensus 373 l~~L~~Wi~~~p~--y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK--Y-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHhCcc--c-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 7777776543211 0 000000 01111222334455555554 4444477777777777777777 9999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 643 EKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
...|+.++... +.|..+||-|...++...+.++|+.-|.++++ +.|+.+ +...|+-.|...|.+++|.+.|-.++.
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999998864 56788999999999999999999999999999 789877 778999999999999999999888653
Q ss_pred ---CC------CCCCHHHHHHHHHHHHccCChhHHHHH
Q 046719 722 ---KG------LIPKADTYNILVKGYCNLKDFGGAYIW 750 (808)
Q Consensus 722 ---~g------~~p~~~~~~~l~~~~~~~g~~~~A~~~ 750 (808)
++ ..++...|..|-.++...++.|-+...
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 21 122345788777777777877755443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.1e-07 Score=85.18 Aligned_cols=124 Identities=8% Similarity=-0.060 Sum_probs=76.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-HccCC--hhH
Q 046719 671 HGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGY-CNLKD--FGG 746 (808)
Q Consensus 671 ~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~-~~~g~--~~~ 746 (808)
.++.++++..+++.++. -+.|...|..|+..|...|++++|...++++.+ +.| +...+..++.++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 45556666666666653 123444666666666666666666666666666 334 455555656553 45555 366
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 747 AYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 747 A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
|..+++++++.++. +...+..++..+.+.|++++|+..++++++..|.+.+
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 66666666666655 6666666666666666666666666666666665555
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.6e-07 Score=80.04 Aligned_cols=123 Identities=12% Similarity=0.037 Sum_probs=100.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 643 EKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
..++++.++ +.|+. +..+...+...|++++|...|+.++. +.| +...|..++.++...|++++|+..|+++.+
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 345666665 34543 45677888999999999999999998 455 556899999999999999999999999998
Q ss_pred CCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 722 KGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLK 774 (808)
Q Consensus 722 ~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 774 (808)
..| +...+..++.++...|++++|+..|+++++..|. ++..+...+..+.
T Consensus 87 --l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 --LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWSEIRQNAQI 137 (144)
T ss_pred --cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 455 6788999999999999999999999999998776 7777766655543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-06 Score=76.58 Aligned_cols=193 Identities=12% Similarity=0.173 Sum_probs=115.0
Q ss_pred cCChHHHHHHHHHHHh---CC-CCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH-HHHcC-H
Q 046719 567 KGRVMEAEDMLPQITS---SG-LNPDVI-TYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSG-CIREG-I 639 (808)
Q Consensus 567 ~g~~~~A~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~-~ 639 (808)
..+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++.+... + |...-...+-.. +...| +
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 3466777777777653 23 344443 3444444555677777777777777664 2 443333333333 23344 7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 046719 640 VAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDM 719 (808)
Q Consensus 640 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~ 719 (808)
++|.++++.+++.+ +.|.+++---+-+.-..|+--+|++.+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 77777777777654 455566655555555566666777766666664 5556667777777777777777777777776
Q ss_pred HHCCCCC-CHHHHHHHHHHHHccC---ChhHHHHHHHHHHHCCCCCCHHHH
Q 046719 720 KVKGLIP-KADTYNILVKGYCNLK---DFGGAYIWYREMFENGFIPSFCIY 766 (808)
Q Consensus 720 ~~~g~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~ 766 (808)
+- +.| ++-.+..++..+.-.| +.+-|.++|.++++..+. +...+
T Consensus 181 ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~-~~ral 228 (289)
T KOG3060|consen 181 LL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK-NLRAL 228 (289)
T ss_pred HH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH-hHHHH
Confidence 65 455 3444455666655444 456667777777766543 44433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.8e-07 Score=86.80 Aligned_cols=153 Identities=20% Similarity=0.173 Sum_probs=94.3
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHccC
Q 046719 597 SGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVY---NALIHCYAEHG 672 (808)
Q Consensus 597 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g 672 (808)
..+...|++++|++++.+. .+.......+..+.+.+ .+.|.+.++.|.+. ..|.... .+.+....-..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHhCch
Confidence 3445566666666665431 33444555566666666 66666666666653 3343222 12222222234
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-hHHHHHH
Q 046719 673 DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDF-GGAYIWY 751 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~ 751 (808)
.+.+|..+|+++.+. ..++..+.+.++.++...|++++|.++++++.+.+ +-++.+...++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 688888888887764 56677788888888888888888888888877642 23567777777777777877 5566777
Q ss_pred HHHHHCCC
Q 046719 752 REMFENGF 759 (808)
Q Consensus 752 ~~~~~~~~ 759 (808)
.++....|
T Consensus 260 ~qL~~~~p 267 (290)
T PF04733_consen 260 SQLKQSNP 267 (290)
T ss_dssp HHCHHHTT
T ss_pred HHHHHhCC
Confidence 77766543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-06 Score=85.65 Aligned_cols=186 Identities=11% Similarity=0.037 Sum_probs=118.7
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC-H---HhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCH--HH
Q 046719 588 DVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS-L---RTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDL--LV 660 (808)
Q Consensus 588 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~ 660 (808)
....+..++..+...|++++|...|+++... .|+ . ..+..+...+...| +++|...++++++....... ..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4556677777778888888888888887764 232 1 34455556666666 77777777777764321111 13
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHH
Q 046719 661 YNALIHCYAEH--------GDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTY 731 (808)
Q Consensus 661 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 731 (808)
+..+..++... |++++|.+.++++.+. .|+.. .+..+...... ... . ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~----~~~------~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYL----RNR------L--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHH----HHH------H--------HHHH
Confidence 44445555443 5667777777777663 34332 22222111000 000 0 0011
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 732 NILVKGYCNLKDFGGAYIWYREMFENGFI-P-SFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 732 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
..++..+.+.|++++|+..++++++..+. | ....+..++.++.+.|++++|..+++.+....|+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35677788999999999999999987553 2 3678999999999999999999999998876653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.3e-06 Score=94.14 Aligned_cols=139 Identities=11% Similarity=-0.014 Sum_probs=110.5
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHH
Q 046719 654 LVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTY 731 (808)
Q Consensus 654 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~ 731 (808)
...+...+-.|..+..+.|++++|..+++.+.+ +.||.. ....++.++.+.+++++|...++++.. ..|+ ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHH
Confidence 345577777888888888888888888888888 577665 677788888888888888888888887 4564 5667
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 046719 732 NILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAW 797 (808)
Q Consensus 732 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 797 (808)
..++.++.+.|++++|..+|+++++.++. +...+..++.+|.+.|+.++|...|+++++......
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 78888888888888888888888875554 678888888888888888888888888887665443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.9e-06 Score=77.93 Aligned_cols=157 Identities=13% Similarity=0.061 Sum_probs=121.4
Q ss_pred HHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046719 628 HPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLRE 706 (808)
Q Consensus 628 ~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~ 706 (808)
..+-..+...| -+....+..+.... .+.|......++....+.|++.+|...+.+.... -++|...|+.++.+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 33344455555 44444444443332 2456667777888889999999999999999884 355777999999999999
Q ss_pred CCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 046719 707 GKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQIL 785 (808)
Q Consensus 707 g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~ 785 (808)
|++++|..-+.++.+ +.| ++...+.++..+.-.||++.|..++.++...+.. |..+-..|+......|++++|.++
T Consensus 148 Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 999999999999988 555 4677888888888999999999999998887655 888888899999999999999887
Q ss_pred HHHH
Q 046719 786 CSEI 789 (808)
Q Consensus 786 ~~~~ 789 (808)
..+-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 6544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-06 Score=90.41 Aligned_cols=238 Identities=16% Similarity=0.141 Sum_probs=181.2
Q ss_pred CCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 046719 514 GVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYN 593 (808)
Q Consensus 514 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 593 (808)
+.+|-...-..+...+...|-...|+.+|++.. .|..++..|+..|+..+|..+..+..++ +||...|.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc 461 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYC 461 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHH
Confidence 345555666777888889999999999998764 4566778888999999999998888874 78889999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 046719 594 SLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHG 672 (808)
Q Consensus 594 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 672 (808)
.+.+..-...-+++|.++.+..... .-..+.......+ ++++.+-|+.-.+.+ +-...+|-.+..+..+.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHh
Confidence 9998888888889999988876542 0011111111234 888888888877754 445678888888888999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 046719 673 DVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWY 751 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 751 (808)
+++.|.+.|..... ..||.. .||++..+|.+.|+..+|...++++.+.. ..+...|....-...+.|.+++|++.+
T Consensus 534 k~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred hhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHH
Confidence 99999999999988 677665 89999999999999999999999998865 445666777777778999999999999
Q ss_pred HHHHHC--CCCCCHHHHHHHHHHHH
Q 046719 752 REMFEN--GFIPSFCIYNELTNGLK 774 (808)
Q Consensus 752 ~~~~~~--~~~~~~~~~~~l~~~l~ 774 (808)
.++.+. ... |..+...++....
T Consensus 611 ~rll~~~~~~~-d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 611 HRLLDLRKKYK-DDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHhhhhcc-cchhhHHHHHHHH
Confidence 998863 223 5555555554443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.4e-06 Score=82.73 Aligned_cols=196 Identities=10% Similarity=0.072 Sum_probs=152.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHHcC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 046719 595 LISGYSSLGSSQKCLELYENMKKLGIKPS-LRTYHPLLSGCIREG--IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEH 671 (808)
Q Consensus 595 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 671 (808)
+-..+...++.++|+.++.++++. .|+ ..+|+.....+...+ ++++...++++++.+ +.+..+|+....++.+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 333445678899999999999974 455 445665555666666 789999999999865 45566788777677777
Q ss_pred CCH--HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CCh-
Q 046719 672 GDV--QKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNL---KDF- 744 (808)
Q Consensus 672 g~~--~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~~- 744 (808)
|+. ++++.+++++++. .| |..+|+...+++...|+++++++.++++++.+ ..|...|+....++.+. |++
T Consensus 120 ~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 120 GPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred CchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccccc
Confidence 763 7889999999984 55 56699999999999999999999999999854 33678888888777665 333
Q ss_pred ---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHHHcCCCCC
Q 046719 745 ---GGAYIWYREMFENGFIPSFCIYNELTNGLKQE----GKLKEAQILCSEISIVGKDAW 797 (808)
Q Consensus 745 ---~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~A~~~~~~~~~~~~~~~ 797 (808)
++++.+..++++..|. +...|+.+...|... ++..+|...+.++.+.+++..
T Consensus 197 ~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~ 255 (320)
T PLN02789 197 AMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHV 255 (320)
T ss_pred ccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcH
Confidence 5788889899998887 888999898888873 456789999999888666533
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.1e-07 Score=79.00 Aligned_cols=115 Identities=11% Similarity=0.017 Sum_probs=74.2
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 680 LHSEMVDQGIRPDK-MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 680 ~~~~~~~~g~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
+++++++ ..|+. .....++..+...|++++|.+.++++...+ +.+...|..++.++.+.|++++|..+++++++.+
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455554 34433 345566666677777777777777766532 2245666667777777777777777777776665
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 759 FIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 759 ~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+. +...+..++.++...|++++|...++++++..|++..
T Consensus 82 p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PD-DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 5666667777777777777777777777777666555
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.9e-05 Score=88.18 Aligned_cols=206 Identities=14% Similarity=0.108 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHH
Q 046719 413 NCITFNTLIDKFCELGEMDKAEEWVKRMLEK-GVS---PNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYG 488 (808)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 488 (808)
....|-..+....+.++.++|+++.++++.. ++. --...|.+++..-..-|.-+...++|++..+. ......|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3444555555555556666666665555542 111 01234555555555555555566666666543 22234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHh
Q 046719 489 SLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGP--TLVTFNALINGLCK 566 (808)
Q Consensus 489 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 566 (808)
.|...|.+.+++++|.++++.|.++ ..-....|...++.+.+.++-+.|..++.++++. .+. -.....-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHhh
Confidence 6666666666666666666666554 2234556666666666666666666666666653 111 13333444455556
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC
Q 046719 567 KGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS 623 (808)
Q Consensus 567 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 623 (808)
.|+.+.++.+|+..+... +.-...|+.+++.-.++|+.+.+..+|++.+..++.|-
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 666666666666666542 22345666666666666666666666666666655554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.9e-05 Score=86.86 Aligned_cols=231 Identities=13% Similarity=0.094 Sum_probs=150.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 046719 518 NAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR-EMG---PTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYN 593 (808)
Q Consensus 518 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 593 (808)
....|-..|....+.++.++|.+++++++.. ++. --.-+|.++++....-|.-+...++|+++.+.. .....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4556777777777888888888888877764 111 123456777777777777777777888777631 1245677
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 046719 594 SLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPD---LLVYNALIHCYA 669 (808)
Q Consensus 594 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 669 (808)
.|...|.+.+++++|.++|+.|.++ +......|...+..+.+.+ -+.|..++.++++. .|. .....-.+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 7777888888888888888888774 3455667777777777777 67777777777763 232 233344455667
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChhHH
Q 046719 670 EHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA--DTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 670 ~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A 747 (808)
+.|+.+.+..+|+..+.. .+--...|+.++..-.++|+.+.+..+|++++..++.|-. ..|...+..-...|+-+.+
T Consensus 1612 k~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 778888888888887764 2223446788888888888888888888888877766632 2333444333344554444
Q ss_pred HHHHHHH
Q 046719 748 YIWYREM 754 (808)
Q Consensus 748 ~~~~~~~ 754 (808)
...-.++
T Consensus 1691 E~VKarA 1697 (1710)
T KOG1070|consen 1691 EYVKARA 1697 (1710)
T ss_pred HHHHHHH
Confidence 3333333
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.8e-08 Score=60.18 Aligned_cols=32 Identities=47% Similarity=0.818 Sum_probs=15.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 046719 234 KLVPTRVTYNTLVDGYCKVGEFEKVSALRERM 265 (808)
Q Consensus 234 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 265 (808)
|+.||.+||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.3e-08 Score=59.13 Aligned_cols=32 Identities=47% Similarity=0.927 Sum_probs=23.4
Q ss_pred CCCCChhhHHHHHHHHHccCCHhHHHHHHHHH
Q 046719 199 RTRPNVFVYNVLISGFCKEKKIRDAEKLFDEM 230 (808)
Q Consensus 199 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 230 (808)
|+.||..+||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777766
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-05 Score=75.14 Aligned_cols=117 Identities=14% Similarity=0.179 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-HhcCC--HhHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGH-LREGK--LSEVKE 714 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~-~~~g~--~~~A~~ 714 (808)
.+++...+++.++.+ +.+...|..+...|...|++++|...|++..+ +.| +...+..++.++ ...|+ .++|.+
T Consensus 55 ~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 55 PEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 566666677777654 66788999999999999999999999999999 456 555888888874 67777 599999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 715 LVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 715 ~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+++++++ ..| +...+..++..+.+.|++++|+..|+++++..+.
T Consensus 132 ~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 132 MIDKALA--LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999998 455 5788899999999999999999999999987654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-06 Score=73.62 Aligned_cols=106 Identities=8% Similarity=-0.061 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGL 773 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 773 (808)
....++..+...|++++|..+|+.+.. +.| +...|..|+.++...|++++|+..|..+...+++ |+..+..++.++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 455777788888888888888888877 556 4666778888888888888888888888888876 888888888888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCchhhhH
Q 046719 774 KQEGKLKEAQILCSEISIVGKDAWTNEDQS 803 (808)
Q Consensus 774 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 803 (808)
...|+.++|++.|+.++..-..+...+.++
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~ 143 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICGEVSEHQILR 143 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhccChhHHHHH
Confidence 888888888888888887765554444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.5e-06 Score=74.91 Aligned_cols=159 Identities=11% Similarity=0.060 Sum_probs=121.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhc
Q 046719 103 NILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKI 182 (808)
Q Consensus 103 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (808)
..+...+...|+-+..+.+....... .+.+....+..+....+.|++.+|...|.++....+. |...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHHc
Confidence 34556677777777777776665433 2456666777888899999999999999988876544 888999999999999
Q ss_pred CChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 046719 183 GDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALR 262 (808)
Q Consensus 183 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 262 (808)
|++++|..-|.+..+..+. +....|.+.-.|.-.|+.+.|+.++......+.. |..+-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 9999999999988885332 4556777777777889999999998888776433 6777778888888888988888776
Q ss_pred HHH
Q 046719 263 ERM 265 (808)
Q Consensus 263 ~~~ 265 (808)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.7e-05 Score=68.03 Aligned_cols=196 Identities=16% Similarity=0.192 Sum_probs=135.0
Q ss_pred HhcCCHHHHHHHHHHHHHc---C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 046719 530 CTMGRIKDAFKFFDEMVKR---E-MGPTLV-TFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGS 604 (808)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 604 (808)
+...+.++..+++.+++.. | ..++.. .|..++-+....|+.+.|...++.+... ++.+...-..-...+-..|+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhc
Confidence 3456788888888888753 3 444543 3455556667788889999988888775 22222222222333456888
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 046719 605 SQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSE 683 (808)
Q Consensus 605 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 683 (808)
+++|+++|+.+.+.. +.|..++-.=+...-..| ..+|.+-+.+..+. +..|...|.-+...|...|+++.|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 999999999988764 445566665555566666 66777777777765 677888999999999999999999999998
Q ss_pred HHHCCCCC-CHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHCCCCC-CHHHHH
Q 046719 684 MVDQGIRP-DKMTYNSLIFGHLREG---KLSEVKELVNDMKVKGLIP-KADTYN 732 (808)
Q Consensus 684 ~~~~g~~p-d~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p-~~~~~~ 732 (808)
++= +.| +...+..++..+.-.| +..-|.+++.+.++ +.| +...+.
T Consensus 180 ~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk--l~~~~~ral~ 229 (289)
T KOG3060|consen 180 LLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK--LNPKNLRALF 229 (289)
T ss_pred HHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hChHhHHHHH
Confidence 887 456 4446667777766555 46678888888887 455 444433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=3e-05 Score=86.24 Aligned_cols=237 Identities=12% Similarity=0.095 Sum_probs=122.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 046719 483 NVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPN-AQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALI 561 (808)
Q Consensus 483 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 561 (808)
+...+..|+..+...+++++|..+.+...+. .|+ ...|-.+...+.+.++.+++..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 4455556666666666666666666654443 222 22233333344444443333322 222
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHH
Q 046719 562 NGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVA 641 (808)
Q Consensus 562 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 641 (808)
.......++.-+..+...+... .-+..++..++.+|.+.|+.++|...|+++.+.. +-|..+.+.+...+....+++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~dL~K 167 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEEDKEK 167 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhhHHH
Confidence 2223333343333333334332 1223355556666666666666666666666543 334455555555554444555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 642 VEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 642 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
|.+++.+.+.. +...+++.++.++|.++.+. .|+. ++.-..+.+++..
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d---------------~d~f~~i~~ki~~ 215 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDD---------------FDFFLRIERKVLG 215 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--Cccc---------------chHHHHHHHHHHh
Confidence 55555554431 33344555555555555552 2322 1222222233222
Q ss_pred C-CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 722 K-GLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLK 774 (808)
Q Consensus 722 ~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 774 (808)
. |..--..++.-+-..|.+.++|++++.+++.+++..+. |......++.+|.
T Consensus 216 ~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 216 HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 1 11222345556667788888899999999999988777 7778888888876
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0017 Score=64.56 Aligned_cols=458 Identities=13% Similarity=0.148 Sum_probs=240.8
Q ss_pred HhCCChHHHHHHHHHHHhCCCCc-----ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHhc
Q 046719 320 SKCGDGEGVMALYEELSGRGFRI-----NSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSG--YCRT 392 (808)
Q Consensus 320 ~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~ 392 (808)
-+.++..++.++|.++.+.--.. .....+.++++|.- .+.+.....+....+.. | ...|-.+..+ +-+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHh
Confidence 36678888888887776542111 01223345555543 34444444444444331 1 1233333333 2366
Q ss_pred CCHHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHH
Q 046719 393 GDLNRAMLAIQQMENH--GLAP------------NCITFNTLIDKFCELGEMDKAEEWVKRMLEK----GVSPNVKTNNT 454 (808)
Q Consensus 393 g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~ 454 (808)
+.+.+|.+.+...... +..+ |-..=+..+.++...|++.+++.+++++... ...-+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 7777777777666554 2211 1111234455666777777777777776654 22356666776
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhc-
Q 046719 455 LIDGYGRMGHFDKCFQILEEMENS-GMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTM- 532 (808)
Q Consensus 455 l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~- 532 (808)
++-++.+. .|-++.+. ....-+. |-.++-.|.+.-...++ -.=..+.|.......++....-.
T Consensus 173 ~vlmlsrS--------YfLEl~e~~s~dl~pd-yYemilfY~kki~~~d~------~~Y~k~~peeeL~s~imqhlfi~p 237 (549)
T PF07079_consen 173 AVLMLSRS--------YFLELKESMSSDLYPD-YYEMILFYLKKIHAFDQ------RPYEKFIPEEELFSTIMQHLFIVP 237 (549)
T ss_pred HHHHHhHH--------HHHHHHHhcccccChH-HHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHHHHHHHHhCC
Confidence 66555442 23333211 0011111 22333333322111111 00001334444444444443322
Q ss_pred -CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHcCCCHH
Q 046719 533 -GRIKDAFKFFDEMVKREMGPTLV-TFNALINGLCKKGRVMEAEDMLPQITSSGLNP----DVITYNSLISGYSSLGSSQ 606 (808)
Q Consensus 533 -g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~ 606 (808)
.+..--+++++.-...-+.|+-. +...+...+.+ +.+++..+.+.+....+.+ =+.++..++....+.++..
T Consensus 238 ~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~ 315 (549)
T PF07079_consen 238 KERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTE 315 (549)
T ss_pred HhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 12222233333333334455532 33444444444 5566666655554432111 1346777778888899999
Q ss_pred HHHHHHHHHHHCCCCcCHHhHH-------HHHHHHHHcC-----HHHHHHHHHHHHHCCCCCCH-HHH-HHHHHHHHccC
Q 046719 607 KCLELYENMKKLGIKPSLRTYH-------PLLSGCIREG-----IVAVEKLFNEMLQINLVPDL-LVY-NALIHCYAEHG 672 (808)
Q Consensus 607 ~A~~~~~~~~~~~~~p~~~~~~-------~l~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~-~~~-~~l~~~~~~~g 672 (808)
+|-+.+.-+.- +.|+...-. .+.+..+..+ ...-..+|+.....++.... ++| -.-+.-+.+.|
T Consensus 316 ~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g 393 (549)
T PF07079_consen 316 EAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIG 393 (549)
T ss_pred HHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcC
Confidence 99888887764 345433211 2223333222 33444556666555433322 222 22234567777
Q ss_pred C-HHHHHHHHHHHHHCCCCC-CHHHHHHHH----HHHHh---cCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHH--
Q 046719 673 D-VQKALVLHSEMVDQGIRP-DKMTYNSLI----FGHLR---EGKLSEVKELVNDMKVKGLIPK----ADTYNILVKG-- 737 (808)
Q Consensus 673 ~-~~~A~~~~~~~~~~g~~p-d~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~-- 737 (808)
. -++|+.+++.+++ +.| |...-|... ..|.+ ...+.+-..+-+-+.+.|+.|- ...-+.|.++
T Consensus 394 ~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEy 471 (549)
T PF07079_consen 394 QCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEY 471 (549)
T ss_pred CccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHH
Confidence 6 8889999999988 444 443333222 22222 2234444455555567788773 4445555554
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCchhhhHhh
Q 046719 738 YCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWTNEDQSAV 805 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 805 (808)
+..+|++.++.-+-....+. .|++.+|..++-++....+++||..++.+++. |-+-+.....+|+
T Consensus 472 Lysqgey~kc~~ys~WL~~i--aPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~-n~~~~dskvqKAl 536 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKI--APSPQAYRLLGLCLMENKRYQEAWEYLQKLPP-NERMRDSKVQKAL 536 (549)
T ss_pred HHhcccHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC-chhhHHHHHHHHH
Confidence 46789999998887777754 67999999999999999999999999988765 4444445555554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00013 Score=67.07 Aligned_cols=108 Identities=14% Similarity=0.017 Sum_probs=54.3
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 046719 667 CYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHL----REGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLK 742 (808)
Q Consensus 667 ~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 742 (808)
.+.+..+.+-|.+.+++|.+ +. +..|.+-|+.++. ..+++.+|.-+|+++.++ ..|++.+.+..+.++..+|
T Consensus 146 I~lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc
Confidence 34444555555555555554 22 2233333333332 233455555555555543 3455555555555555555
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 046719 743 DFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKL 779 (808)
Q Consensus 743 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 779 (808)
++++|..++++++...++ ++.++..++.+-...|+.
T Consensus 222 ~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD 257 (299)
T ss_pred CHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence 555555555555555544 455555555554455544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-05 Score=76.52 Aligned_cols=183 Identities=13% Similarity=0.018 Sum_probs=129.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHH--
Q 046719 552 PTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPD-V---ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLR-- 625 (808)
Q Consensus 552 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-- 625 (808)
.....+..+...+...|++++|...++++.... |+ . .++..+..++...|++++|+..++++.+. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~ 106 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDA 106 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCch
Confidence 457778888889999999999999999998753 33 2 46788889999999999999999999975 33322
Q ss_pred --hHHHHHHHHHHc--------C-HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 046719 626 --TYHPLLSGCIRE--------G-IVAVEKLFNEMLQINLVPDL-LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDK 693 (808)
Q Consensus 626 --~~~~l~~~~~~~--------~-~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~ 693 (808)
++..+...+... | .++|.+.++++++.. |+. ..+..+.... .... ...
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~----~~~~-------~~~------- 166 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMD----YLRN-------RLA------- 166 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHH----HHHH-------HHH-------
Confidence 344444555543 5 888999999998853 432 2222221110 0000 000
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 694 MTYNSLIFGHLREGKLSEVKELVNDMKVKGL-IP-KADTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 694 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
.....++..+.+.|++.+|+..++++++... .| ....+..++.++.+.|++++|..+++.+....
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 1123677788999999999999999887421 12 35788899999999999999999988877643
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00021 Score=71.80 Aligned_cols=206 Identities=16% Similarity=0.158 Sum_probs=129.4
Q ss_pred ChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHH
Q 046719 569 RVMEAEDMLPQITSSG--LNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLF 646 (808)
Q Consensus 569 ~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~ 646 (808)
++.++.+..+++...+ -.|+...+...+.+......-..+..++-+-.+ -.-...-|...+..+.....++|+..+
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRALQTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHHHHHHhcccchHHHHH
Confidence 3444444444443311 134455555555544333332333322222222 011223344344434333388888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 046719 647 NEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLI 725 (808)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 725 (808)
+.++.. .+.|...+....+.+.+.++.++|.+.++++.. ..|+ ......++.+|.+.|+..+|+.+++..... .+
T Consensus 330 ~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p 405 (484)
T COG4783 330 QPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DP 405 (484)
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CC
Confidence 888775 245566666777888888888888888888888 4666 446667888888888888888888887764 34
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 726 PKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 726 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.|+..|..|..+|...|+..+|.... ++.|.-.|++++|+..+....+...-+.+
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~~~~~~~~ 460 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQQVKLGFP 460 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHHhccCCcH
Confidence 57888888888888888877765543 44556678888888888888877644444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00011 Score=81.17 Aligned_cols=132 Identities=9% Similarity=0.074 Sum_probs=73.7
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046719 168 DKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVD 247 (808)
Q Consensus 168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 247 (808)
++..+-.|.....+.|++++|+.+++.+.+..+. +......+..++.+.+++++|+...++.....+. +......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 4555555666666666666666666666554221 3444555555566666666666666666555332 3444455555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 248 GYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEA 302 (808)
Q Consensus 248 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 302 (808)
++.+.|++++|..+|++....+ +-+..++..+...+...|+.++|...|+...+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5556666666666666665521 12345555555566666666666666666554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-06 Score=80.48 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=49.2
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCh
Q 046719 667 CYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDF 744 (808)
Q Consensus 667 ~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~ 744 (808)
-..+.+++++|+..|.++++ +.| |.+-|..-+.+|++.|.++.|++-.+..+. +.|. ..+|..|+.+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 34455556666666666655 333 344445555556666666666655555555 4443 34555566666666666
Q ss_pred hHHHHHHHHHHHCCC
Q 046719 745 GGAYIWYREMFENGF 759 (808)
Q Consensus 745 ~~A~~~~~~~~~~~~ 759 (808)
++|++.|+++++..|
T Consensus 166 ~~A~~aykKaLeldP 180 (304)
T KOG0553|consen 166 EEAIEAYKKALELDP 180 (304)
T ss_pred HHHHHHHHhhhccCC
Confidence 666666666555443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00051 Score=69.19 Aligned_cols=122 Identities=15% Similarity=-0.027 Sum_probs=65.7
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChh
Q 046719 667 CYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFG 745 (808)
Q Consensus 667 ~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~ 745 (808)
.+...|.+++|+..++.++.. .+-|...+...+..+.+.++.++|.+.+++++. ..|+ ...+..++.+|.+.|+..
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChH
Confidence 344455556666655555553 122333344445555555666666666655555 3444 444455555555566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 746 GAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 746 ~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
+|+.++++.....+. |+..|..|+++|...|+..+|.....+....
T Consensus 392 eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 392 EAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 666655555555444 5555556666666666555555555555443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-05 Score=69.02 Aligned_cols=113 Identities=12% Similarity=-0.016 Sum_probs=91.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 046719 645 LFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGL 724 (808)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 724 (808)
.+++++... +.+......++..+...|++++|...++++.+.+ +.+...+..++..+...|++++|..+++++.+.+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 455555542 2244566778888999999999999999998852 3356688899999999999999999999998843
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 725 IPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 725 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+.+...+..++.++...|++++|..+++++++.++.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 335788889999999999999999999999987654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00052 Score=63.33 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 046719 500 LLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR 548 (808)
Q Consensus 500 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 548 (808)
+.+|.-+|++|.++ ..|++.+.+....++...|++++|..++++.+.+
T Consensus 189 ~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 44444444444433 3334444444444444444444444444444443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00029 Score=78.69 Aligned_cols=242 Identities=12% Similarity=0.040 Sum_probs=148.0
Q ss_pred CCCCccHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHH
Q 046719 95 PYYKPTFTNILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGK 174 (808)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 174 (808)
.|.+...+..|+..+...+++++|.++.....+.. +.....|-.++..+.+.++++.+..+ .+.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l------------- 90 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLI------------- 90 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhh-------------
Confidence 34455667778888888888999998888666643 33444555555577777776666555 332
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 046719 175 AVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGE 254 (808)
Q Consensus 175 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 254 (808)
.......++.....++..+... .-+...+..+..+|-+.|+.++|..+++++.+..+. |+.+.|.+...|... +
T Consensus 91 --~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 91 --DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-D 164 (906)
T ss_pred --hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-h
Confidence 2222233333333334444442 224557788888888999999999999999888743 788888888888888 8
Q ss_pred hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHH
Q 046719 255 FEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEE 334 (808)
Q Consensus 255 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 334 (808)
.++|.+++.+.... |...+++..+..++.++...... +...+..+++.....-
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~----------- 217 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR----------- 217 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh-----------
Confidence 89998888776442 55667788888888888775321 2222222222111110
Q ss_pred HHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 046719 335 LSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYC 390 (808)
Q Consensus 335 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 390 (808)
|..--+.++..+-..|-+..+++++..++..+++.... |.....-++..|.
T Consensus 218 ----~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 ----EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ----ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 11111223333455555666666777777766665443 4444555555554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.8e-05 Score=78.14 Aligned_cols=128 Identities=14% Similarity=0.122 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGY 738 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 738 (808)
....+|+..+...++++.|+.+++++.+. .|+.. ..++..+...++-.+|++++++.++. .+-+...+..-+..|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER--DPEVA--VLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc--CCcHH--HHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 34455666667778999999999999885 46543 35778888888888999999998863 223566677777778
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 739 CNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 739 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
...++++.|+++.+++.+..|. +...|..|+.+|.+.|++++|+-.++.++..
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 8899999999999999988777 7889999999999999999999888877643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.1e-05 Score=66.89 Aligned_cols=125 Identities=13% Similarity=0.109 Sum_probs=85.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 046719 661 YNALIHCYAEHGDVQKALVLHSEMVDQGIRPD---KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK--ADTYNILV 735 (808)
Q Consensus 661 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~ 735 (808)
|..++..+ ..++...+...++.+.+.. +.+ ......++..+...|++++|...|+.+.+....|+ ......++
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344343 3778888888888887752 222 12344567778888888888888888887542222 23455678
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 046719 736 KGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEI 789 (808)
Q Consensus 736 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 789 (808)
.++...|++++|+..++..... ...+..+...+.+|.+.|++++|+..|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 8888888888888888664322 224556677888888888888888888765
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.8e-05 Score=66.20 Aligned_cols=102 Identities=13% Similarity=0.096 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC--CHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK----ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP--SFCIYNE 768 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ 768 (808)
++..++..+...|++++|.+.++++.+. .|+ ...+..++.++.+.|++++|...++++....+.. ....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3456666677777777777777777653 232 3455667777777777777777777777654432 2456677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 769 LTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 769 l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
++.++.+.|++++|...++++++..|++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 777777777777777777777777766543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.4e-06 Score=67.05 Aligned_cols=81 Identities=15% Similarity=0.092 Sum_probs=45.2
Q ss_pred cCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 046719 706 EGKLSEVKELVNDMKVKGLI-PKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQI 784 (808)
Q Consensus 706 ~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~ 784 (808)
.|+++.|+.+++++.+.... ++...+..++.++.+.|++++|+.++++ .+.++. +......++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666666666666653211 1334445566666666666666666666 333332 34455555666666666666666
Q ss_pred HHHH
Q 046719 785 LCSE 788 (808)
Q Consensus 785 ~~~~ 788 (808)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.9e-05 Score=66.04 Aligned_cols=113 Identities=17% Similarity=0.117 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHhHHH
Q 046719 639 IVAVEKLFNEMLQINLVPD---LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDK--MTYNSLIFGHLREGKLSEVK 713 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~--~~~~~l~~~~~~~g~~~~A~ 713 (808)
...+.+.++.+.+.. +.+ ....-.+...+...|++++|...|+.+.+....|+. .....|+..+...|++++|+
T Consensus 27 ~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al 105 (145)
T PF09976_consen 27 PAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEAL 105 (145)
T ss_pred HHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666777777777653 222 233445667888999999999999999986522222 24557889999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 046719 714 ELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREM 754 (808)
Q Consensus 714 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 754 (808)
..++.... -...+..+...+.++.+.|++++|...|+++
T Consensus 106 ~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 106 ATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 99977433 2234567788999999999999999999876
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.3e-05 Score=62.63 Aligned_cols=96 Identities=21% Similarity=0.123 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLK 774 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 774 (808)
+..++..+...|++++|...++++.+. .| +...+..++.++...|++++|.+.++++.+..+. +...+..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHH
Confidence 445566666667777777777766652 33 3355666666666777777777777777665544 4456666777777
Q ss_pred hcCChhHHHHHHHHHHHcCC
Q 046719 775 QEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 775 ~~g~~~~A~~~~~~~~~~~~ 794 (808)
..|++++|...+++..+..|
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHhHHHHHHHHHHHHccCC
Confidence 77777777777777665544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.4e-06 Score=61.16 Aligned_cols=67 Identities=16% Similarity=0.121 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCC
Q 046719 727 KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG-KLKEAQILCSEISIVGK 794 (808)
Q Consensus 727 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~A~~~~~~~~~~~~ 794 (808)
++.+|..++..+...|++++|+..|+++++.++. +...+..++.++...| ++++|++.++++++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567888888888899999999999999888776 7888888899999988 68999999988888765
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.4e-05 Score=59.03 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=48.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 046719 734 LVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDA 796 (808)
Q Consensus 734 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 796 (808)
++..+.+.|++++|...|+++++..|. +...+..++.++...|++++|..+++++++..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 466777888888888888888887766 77888888888888888888888888888877765
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.5e-05 Score=77.64 Aligned_cols=105 Identities=14% Similarity=0.055 Sum_probs=86.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc
Q 046719 663 ALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCN 740 (808)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 740 (808)
..+..+...|++++|+..|+++++. .| +...|..++.+|...|++++|+..++++++ +.| +...|..++.+|..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHH
Confidence 3456677889999999999999984 45 455888999999999999999999999988 556 57788899999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 741 LKDFGGAYIWYREMFENGFIPSFCIYNELTNG 772 (808)
Q Consensus 741 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 772 (808)
.|++++|+..|+++++.++. +......+..+
T Consensus 83 lg~~~eA~~~~~~al~l~P~-~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPG-DSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 99999999999999998776 66655555444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00022 Score=61.27 Aligned_cols=98 Identities=9% Similarity=-0.133 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 658 LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDK-MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVK 736 (808)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 736 (808)
......+...+...|++++|.++|+-+.. +.|.. .-|..|+-++...|++++|+..+..+...+ +.|+..+..++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34455667778899999999999999988 56654 478899999999999999999999998843 236888999999
Q ss_pred HHHccCChhHHHHHHHHHHHCC
Q 046719 737 GYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 737 ~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
++...|+.+.|.+.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998753
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.1e-05 Score=70.39 Aligned_cols=129 Identities=17% Similarity=0.181 Sum_probs=98.2
Q ss_pred HHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCH
Q 046719 632 SGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKL 709 (808)
Q Consensus 632 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~ 709 (808)
+-..+.+ +++|...|.+.++.. +.|.+.|..-..+|.+.|.++.|++-.+..+. +.|... +|..|+.+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 3456667 999999999999964 56778888899999999999999999999998 677766 999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCChh---HHHHHHHHHHHCCCCCCHHH
Q 046719 710 SEVKELVNDMKVKGLIPKADTYN-ILVKGYCNLKDFG---GAYIWYREMFENGFIPSFCI 765 (808)
Q Consensus 710 ~~A~~~~~~~~~~g~~p~~~~~~-~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~ 765 (808)
++|++.|++.++ +.|+..+|. .|-.+--+.+... .+..-.+-....|..|+...
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s 223 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRS 223 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchh
Confidence 999999999998 889766654 4444433444444 44444444444454455443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00051 Score=67.35 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=42.5
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccC
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRPDK-----MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLK 742 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~pd~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g 742 (808)
.+.|++.+|.+.|.+.+. +.|+. ..|.....+..+.|+..+|+.-.+...+ +.|. ...+..-+.++...+
T Consensus 260 fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHH
Confidence 455556666666665554 33322 2344444455555566666555555554 3332 223333344444555
Q ss_pred ChhHHHHHHHHHHHC
Q 046719 743 DFGGAYIWYREMFEN 757 (808)
Q Consensus 743 ~~~~A~~~~~~~~~~ 757 (808)
+|++|.+.++++.+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 566666666555543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00012 Score=62.20 Aligned_cols=97 Identities=16% Similarity=0.082 Sum_probs=80.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD----KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK----ADTY 731 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~ 731 (808)
++..++..+.+.|++++|.+.|+++.+. .|+ ...+..++.++.+.|++++|...++++... .|+ ...+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHH
Confidence 4566778888999999999999999874 333 246677999999999999999999998873 333 5678
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 732 NILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 732 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
..++.++.+.|++++|...++++++..|.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 88899999999999999999999988665
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.017 Score=56.53 Aligned_cols=282 Identities=13% Similarity=0.131 Sum_probs=145.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHH
Q 046719 463 GHFDKCFQILEEMENSGMKPNVVSYGSLINW--LCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFK 540 (808)
Q Consensus 463 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 540 (808)
|+-..|.++-.+-.+. +..|......++.+ -.-.|+++.|.+-|+.|... .+.-..-...|.-...+.|..+.|..
T Consensus 98 Gda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 98 GDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred CchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHH
Confidence 4444454444433221 22333333333322 23456666666666666542 11111112333333445677777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHH---HcCCCHHHHHHHHHH
Q 046719 541 FFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSG-LNPDVIT--YNSLISGY---SSLGSSQKCLELYEN 614 (808)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~--~~~l~~~~---~~~g~~~~A~~~~~~ 614 (808)
+-++.-..- +.-...+...+...|..|+++.|+++++.-.... +.+++.- --.|+.+- .-..+...|...-.+
T Consensus 176 yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~ 254 (531)
T COG3898 176 YAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE 254 (531)
T ss_pred HHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 766665541 2234556667777777777777777777655421 2333311 11111111 112234555555444
Q ss_pred HHHCCCCcCHH-hHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCC
Q 046719 615 MKKLGIKPSLR-TYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQ-GIRP 691 (808)
Q Consensus 615 ~~~~~~~p~~~-~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p 691 (808)
..+ +.|+.. .-.....++.+.| +.++..+++.+.+....|++ + .+..+.+.|+. ++.-+++.... .++|
T Consensus 255 a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdt--a~dRlkRa~~L~slk~ 326 (531)
T COG3898 255 ANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDT--ALDRLKRAKKLESLKP 326 (531)
T ss_pred Hhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCc--HHHHHHHHHHHHhcCc
Confidence 443 345532 2223344566666 77777777777775444443 2 22234455543 22222222110 1445
Q ss_pred CH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CChhHHHHHHHHHHHC
Q 046719 692 DK-MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNL-KDFGGAYIWYREMFEN 757 (808)
Q Consensus 692 d~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 757 (808)
|. .+...+..+-...|++..|..-.+.+.+ ..|....|..|.+.-... ||-.++..++-+.++.
T Consensus 327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 327 NNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 43 3556667777777777777777666665 567777777777665543 7777777777777764
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00014 Score=66.36 Aligned_cols=115 Identities=13% Similarity=0.038 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD--KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILV 735 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 735 (808)
..+..++..+...|++++|...|++.++....+. ...+..++..+.+.|++++|...++++++ ..| +...+..++
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHH
Confidence 3455555556666666666666666655321111 23455566666666666666666666655 233 344445555
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 046719 736 KGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDA 796 (808)
Q Consensus 736 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 796 (808)
.++...|+...+..-++++.. .+++|...++++...+|++
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhCchh
Confidence 555555554444333333221 1466777777777766665
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0018 Score=56.29 Aligned_cols=134 Identities=13% Similarity=0.136 Sum_probs=107.4
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC---CHHH
Q 046719 654 LVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP---KADT 730 (808)
Q Consensus 654 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~ 730 (808)
..|+...-..|..++.+.|++.||..+|++...--+.-|......+..+....+++..|...++++.+.. | .+.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCc
Confidence 3566666777888999999999999999999874344567788899999999999999999999988743 4 2455
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
...++..+...|++.+|...|+.++..- |++......+..+.++|+..||..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6678889999999999999999998764 5566666677889999998888776665554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.03 Score=59.03 Aligned_cols=205 Identities=11% Similarity=0.080 Sum_probs=114.0
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 046719 376 VPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENH-GLAP--------NCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVS 446 (808)
Q Consensus 376 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 446 (808)
.|....|..+.....+.-.++-|...|-+..+. |++. +...-.+-+.+ --|++++|++++-+|.++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence 356677887777777777777777666554332 2210 00000111112 2378888888888776552
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHH
Q 046719 447 PNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGM--KPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNM 524 (808)
Q Consensus 447 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ 524 (808)
..+..+.+.|+|-...++++.-- .+. ..-...++.+...+.....|++|.+.+..-... ..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 23456667777766666654311 000 011346777777777777777777777654321 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 046719 525 LIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGS 604 (808)
Q Consensus 525 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 604 (808)
.+.++....++++-..+... ++.+....-.+.+++...|.-++|.+.+-+-. .|. ..+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHH
Confidence 45555555555544433333 23355556667777777777777776654332 111 23445666677
Q ss_pred HHHHHHHHHHH
Q 046719 605 SQKCLELYENM 615 (808)
Q Consensus 605 ~~~A~~~~~~~ 615 (808)
+.+|.++-+..
T Consensus 894 W~~avelaq~~ 904 (1189)
T KOG2041|consen 894 WGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHhc
Confidence 77777766543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.016 Score=60.91 Aligned_cols=59 Identities=19% Similarity=0.358 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVK-GLIPKADTYNILVKGYCNLKDFGGAYIWYRE 753 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 753 (808)
.+-.|+.-....|..+.|.+..-.+.+. ++-|....|..++-+.|....+...-+.+-+
T Consensus 1023 HFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmk 1082 (1189)
T KOG2041|consen 1023 HFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMK 1082 (1189)
T ss_pred HHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 4445566666778888887765555432 2455567777666666655555444443333
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00039 Score=70.92 Aligned_cols=123 Identities=19% Similarity=0.219 Sum_probs=88.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 046719 592 YNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAE 670 (808)
Q Consensus 592 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 670 (808)
-..|+..+...++++.|+.+|+++.+.. |+. ...+...+...+ -.+|.+++++.++.. +.+...+..-+..|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3455666667788888888888888653 443 334555666666 677788887777643 4466677777777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 671 HGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 671 ~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
.++++.|+++.+++.+ ..|+.. +|..|+.+|.+.|+++.|+-.++.+.-
T Consensus 247 k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8888888888888887 466555 888888888888888888887777653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00022 Score=73.23 Aligned_cols=92 Identities=10% Similarity=0.181 Sum_probs=68.7
Q ss_pred HHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 046719 632 SGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKL 709 (808)
Q Consensus 632 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~ 709 (808)
..+...| +++|.+.|+++++.+ +.+...|..+..+|.+.|++++|+..++++++ +.| +...|..++.+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCCH
Confidence 3345556 888888888888764 44567777778888888888888888888887 455 444777888888888888
Q ss_pred hHHHHHHHHHHHCCCCCCH
Q 046719 710 SEVKELVNDMKVKGLIPKA 728 (808)
Q Consensus 710 ~~A~~~~~~~~~~g~~p~~ 728 (808)
++|+..++++++ +.|+.
T Consensus 87 ~eA~~~~~~al~--l~P~~ 103 (356)
T PLN03088 87 QTAKAALEKGAS--LAPGD 103 (356)
T ss_pred HHHHHHHHHHHH--hCCCC
Confidence 888888888877 55643
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0099 Score=58.69 Aligned_cols=88 Identities=16% Similarity=0.136 Sum_probs=63.9
Q ss_pred HHHcC-HHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC
Q 046719 634 CIREG-IVAVEKLFNEMLQIN---LVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGK 708 (808)
Q Consensus 634 ~~~~~-~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~ 708 (808)
..+.| +..|.+.|.+.+..+ ..++...|.....+..+.|+.++|+.--++..+ +.|... .|..-+.++...++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHH
Confidence 34566 777888887777632 334556677777788889999999999888877 444433 45555677778888
Q ss_pred HhHHHHHHHHHHHCC
Q 046719 709 LSEVKELVNDMKVKG 723 (808)
Q Consensus 709 ~~~A~~~~~~~~~~g 723 (808)
|++|.+-++++.+..
T Consensus 337 ~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999987643
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.4e-05 Score=61.31 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=61.4
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHH
Q 046719 671 HGDVQKALVLHSEMVDQGI-RPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAY 748 (808)
Q Consensus 671 ~g~~~~A~~~~~~~~~~g~-~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 748 (808)
.|++++|+.+++++.+..- .|+...+..++.++.+.|++++|+.++++ .+ ..| +......++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5889999999999998521 12344566689999999999999999988 33 233 3455667799999999999999
Q ss_pred HHHHHH
Q 046719 749 IWYREM 754 (808)
Q Consensus 749 ~~~~~~ 754 (808)
+.++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999874
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0002 Score=57.84 Aligned_cols=96 Identities=21% Similarity=0.177 Sum_probs=77.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 046719 661 YNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCN 740 (808)
Q Consensus 661 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 740 (808)
+..++..+...|++++|...++++.+. .+.+...+..++..+...|++++|.+.+++..+.. ..+..++..++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 456677788899999999999999884 23344678888999999999999999999988742 2345678888899999
Q ss_pred cCChhHHHHHHHHHHHCC
Q 046719 741 LKDFGGAYIWYREMFENG 758 (808)
Q Consensus 741 ~g~~~~A~~~~~~~~~~~ 758 (808)
.|++++|...++++.+.+
T Consensus 81 ~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 81 LGKYEEALEAYEKALELD 98 (100)
T ss_pred HHhHHHHHHHHHHHHccC
Confidence 999999999999987654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00026 Score=68.49 Aligned_cols=101 Identities=11% Similarity=0.028 Sum_probs=65.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC--CCHHHHHHH
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVKGLIPK----ADTYNILVKGYCNLKDFGGAYIWYREMFENGFI--PSFCIYNEL 769 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l 769 (808)
|........+.|++++|+..|+.+++. .|+ +..+..++.+|...|++++|...|+++++..|. ..+..+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 433333345567777777777777663 343 245667777777777777777777777764332 134566666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 770 TNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 770 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+.++...|+.++|.+.++++++..|+.-.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 77777777777777777777777776554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.9e-05 Score=48.81 Aligned_cols=33 Identities=42% Similarity=0.845 Sum_probs=16.8
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC
Q 046719 206 VYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPT 238 (808)
Q Consensus 206 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 238 (808)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555554444
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.83 E-value=6.8e-05 Score=56.95 Aligned_cols=67 Identities=15% Similarity=0.002 Sum_probs=53.1
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCchhhh
Q 046719 735 VKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWTNEDQ 802 (808)
Q Consensus 735 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 802 (808)
...|.+.+++++|.+.++++++.+|. ++..+...+.++.+.|++++|...++++++..|++.....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 35677788888888888888888777 78888888888888888888888888888888876664433
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.7e-05 Score=48.92 Aligned_cols=33 Identities=48% Similarity=0.886 Sum_probs=15.8
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC
Q 046719 276 MFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPD 308 (808)
Q Consensus 276 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 308 (808)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00077 Score=58.21 Aligned_cols=92 Identities=13% Similarity=-0.019 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 698 SLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG 777 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 777 (808)
..+.-+...|++++|..+|.-+.-.+ .-|..-|..|+.++-..+++++|+..|..+...++. |+......+.++...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhC
Confidence 44555566667777777766665522 124555556666666666777777776666665544 5666666667777777
Q ss_pred ChhHHHHHHHHHHH
Q 046719 778 KLKEAQILCSEISI 791 (808)
Q Consensus 778 ~~~~A~~~~~~~~~ 791 (808)
+.++|+..|+.++.
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 77777776666665
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.046 Score=53.72 Aligned_cols=295 Identities=16% Similarity=0.158 Sum_probs=191.7
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHH
Q 046719 487 YGSLINWLC--KDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDG--SCTMGRIKDAFKFFDEMVKREMGPTLVT--FNAL 560 (808)
Q Consensus 487 ~~~ll~~~~--~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l 560 (808)
|..|-.++. -.|+-..|.++-.+..+. +..|......++.+ ..-.|+++.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 344444443 356777777766655432 33355555555544 44589999999999999863 22221 1222
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCcCHH--hHHHHHHH--HH
Q 046719 561 INGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKL-GIKPSLR--TYHPLLSG--CI 635 (808)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~--~~~~l~~~--~~ 635 (808)
.-.-.+.|..+.|..+-+.....- +--...+...+...+..|+++.|+++.+.-... -+.++.. .-..|+.+ ..
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 223346788999999888887642 223467888999999999999999999877654 2334422 22233332 22
Q ss_pred HcC--HHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 046719 636 REG--IVAVEKLFNEMLQINLVPDLLV-YNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEV 712 (808)
Q Consensus 636 ~~~--~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A 712 (808)
..+ ...|...-.+..+ +.||..- -..-..++.+.|+..++-++++.+.+. .|...+ .+...+.+.|+. +
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~i--a~lY~~ar~gdt--a 311 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDI--ALLYVRARSGDT--A 311 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHH--HHHHHHhcCCCc--H
Confidence 222 4555555555555 4566432 233457889999999999999999995 444433 234445566653 3
Q ss_pred HHHHHH---HHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHH
Q 046719 713 KELVND---MKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQE-GKLKEAQILCS 787 (808)
Q Consensus 713 ~~~~~~---~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~A~~~~~ 787 (808)
+.-+++ +.. +.|| ......+..+....|++..|..--+.+... .|....|..|++.-... |+..++..++.
T Consensus 312 ~dRlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 312 LDRLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred HHHHHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 333333 333 5564 566778888888999999998877777654 56777888888776544 99999999999
Q ss_pred HHHHcCCC-CCc
Q 046719 788 EISIVGKD-AWT 798 (808)
Q Consensus 788 ~~~~~~~~-~~~ 798 (808)
+..+.+.+ .|+
T Consensus 388 qav~APrdPaW~ 399 (531)
T COG3898 388 QAVKAPRDPAWT 399 (531)
T ss_pred HHhcCCCCCccc
Confidence 99887644 444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.9e-05 Score=57.98 Aligned_cols=57 Identities=14% Similarity=0.058 Sum_probs=41.7
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 046719 739 CNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDA 796 (808)
Q Consensus 739 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 796 (808)
.+.|++++|+.+|+++++..|. +..++..++.+|.+.|++++|..++++++...|++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 3567777777777777777666 77777777777777777777777777777777764
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00076 Score=61.51 Aligned_cols=128 Identities=18% Similarity=0.216 Sum_probs=91.6
Q ss_pred HHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 046719 624 LRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPD--LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-KMTYNSL 699 (808)
Q Consensus 624 ~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l 699 (808)
...+..+...+...| +++|...|++.++....+. ...+..++.++.+.|++++|+..+++.++. .|+ ...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 345666667788888 9999999999987543332 467888899999999999999999999984 554 4577788
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 700 IFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGK 778 (808)
Q Consensus 700 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 778 (808)
+..+...|+...+..-+..+.. .+++|.+.++++.+.++. + +..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~p~-~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLAPN-N---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhCch-h---HHHHHHHHHhcCc
Confidence 8999998887776655444332 267778888888766543 2 4444444444443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.057 Score=54.26 Aligned_cols=464 Identities=15% Similarity=0.150 Sum_probs=253.3
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCH------hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHH--HH
Q 046719 284 FCKAKRMEEAKSVCKEMEAHGFDPDG------FTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNA--LC 355 (808)
Q Consensus 284 ~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 355 (808)
+-+.+++.+|..+|.+..+.. ..++ ..-+.++++|... +.+.....+.+..+... ...|-.|..+ +.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~---~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG---KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC---CchHHHHHHHHHHH
Confidence 347899999999999987642 2222 2344566777644 45555555555544321 2344445444 35
Q ss_pred hcCChHHHHHHHHHHHHC--CCCC------------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHH
Q 046719 356 KEGKVEIAEEIVGKEIEN--GLVP------------DEVMFNTIVSGYCRTGDLNRAMLAIQQMENHG----LAPNCITF 417 (808)
Q Consensus 356 ~~g~~~~a~~~~~~~~~~--~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~ 417 (808)
+.+.+.+|.+.+..-..+ +..| |-..=+..+..+...|++.++..+++++...= ..-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 789999999988876654 2222 12222556778889999999999999887643 34688889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 046719 418 NTLIDKFCELGEMDKAEEWVKRMLEK---GVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWL 494 (808)
Q Consensus 418 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 494 (808)
+.++-.+.+. .|-++.+. .+-|+ |--++..|.+.=+.-++ ..-..+-|.......++...
T Consensus 171 d~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~------~~Y~k~~peeeL~s~imqhl 233 (549)
T PF07079_consen 171 DRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQ------RPYEKFIPEEELFSTIMQHL 233 (549)
T ss_pred HHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHHHHHHH
Confidence 8877666542 33333221 12222 22333344332111111 00001223333333333322
Q ss_pred Hhc--CCHHHHHHHHHHHHhCCCCcchh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhc
Q 046719 495 CKD--CKLLEAEIVLKDMENRGVLPNAQ-IYNMLIDGSCTMGRIKDAFKFFDEMVKREMG----PTLVTFNALINGLCKK 567 (808)
Q Consensus 495 ~~~--~~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~ 567 (808)
.-. .+..--.++++.....-+.|+.. ....+...+.. +.+++..+.+.+....+. .-..++..++....+.
T Consensus 234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~ 311 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ 311 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 11111122222222222444432 23344444443 445555554444332111 1244566777777788
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHH----cCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH---H
Q 046719 568 GRVMEAEDMLPQITSSGLNPDVIT-------YNSLISGYS----SLGSSQKCLELYENMKKLGIKPSLRTYHPLLS---G 633 (808)
Q Consensus 568 g~~~~A~~~~~~~~~~~~~~~~~~-------~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~---~ 633 (808)
++...|.+.+.-+..- .|+... -..+.+..+ ..-+...-+-+|+......+.- ......|+. -
T Consensus 312 ~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~ 388 (549)
T PF07079_consen 312 VQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKH 388 (549)
T ss_pred HhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHH
Confidence 8888888777766653 333221 112222222 1223344455666665543221 222223333 2
Q ss_pred HHHcC--HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHc---cCCHHHHHHHHHHHHHCCCCCCH----HHHHHHH
Q 046719 634 CIREG--IVAVEKLFNEMLQINLVPDLLVYNALI----HCYAE---HGDVQKALVLHSEMVDQGIRPDK----MTYNSLI 700 (808)
Q Consensus 634 ~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~g~~pd~----~~~~~l~ 700 (808)
+.+.| -+.+.++++..++.. +-|...-|.+. ..|.. ...+.+-+++-+-+.+.|+.|-. ..-|.|.
T Consensus 389 lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 56666 788899998888742 34554444332 22221 12344444454555567877732 3455555
Q ss_pred HH--HHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 701 FG--HLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGK 778 (808)
Q Consensus 701 ~~--~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 778 (808)
.+ +..+|++.++.-+-.-+.+ +.|++.+|..++-++....++++|..++.+. +|+...+.. +
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds---------k 531 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS---------K 531 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH---------H
Confidence 44 6789999999988888877 8999999999999999999999999999886 445544332 3
Q ss_pred hhHHHHHHHHHHH
Q 046719 779 LKEAQILCSEISI 791 (808)
Q Consensus 779 ~~~A~~~~~~~~~ 791 (808)
.++|..++.+-+.
T Consensus 532 vqKAl~lCqKh~~ 544 (549)
T PF07079_consen 532 VQKALALCQKHLP 544 (549)
T ss_pred HHHHHHHHHHhhh
Confidence 4566666655443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0021 Score=63.95 Aligned_cols=142 Identities=19% Similarity=0.223 Sum_probs=77.1
Q ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-----H
Q 046719 661 YNALIHCYAEH-GDVQKALVLHSEMVDQ----GIRPD--KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-----A 728 (808)
Q Consensus 661 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~----g~~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~ 728 (808)
+..+...|... |++++|++.|+++.+. | .+. ...+..++..+.+.|++++|+++|++....-...+ .
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 34455566666 7788888888777653 2 111 12456677778888888888888887765422211 1
Q ss_pred -HHHHHHHHHHHccCChhHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCchhh
Q 046719 729 -DTYNILVKGYCNLKDFGGAYIWYREMFENG--FIPS--FCIYNELTNGLKQ--EGKLKEAQILCSEISIVGKDAWTNED 801 (808)
Q Consensus 729 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~--~~~~~~l~~~l~~--~g~~~~A~~~~~~~~~~~~~~~~~~~ 801 (808)
..+...+-++...||...|.+.+++..... +..+ ......|+.++-. ...+.+|..-|+.+.+ .++|-...
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~--ld~w~~~~ 273 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR--LDNWKTKM 273 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-----HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc--cHHHHHHH
Confidence 123334445666788888888888876543 2222 3344455555533 2355566666666533 56666555
Q ss_pred hHhh
Q 046719 802 QSAV 805 (808)
Q Consensus 802 ~~~~ 805 (808)
+-.+
T Consensus 274 l~~~ 277 (282)
T PF14938_consen 274 LLKI 277 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0014 Score=62.44 Aligned_cols=104 Identities=12% Similarity=-0.032 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccC---ChhHHHHHHHHHHHCCCCCCHHHHH
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLK---DFGGAYIWYREMFENGFIPSFCIYN 767 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~ 767 (808)
|...|..|+.+|...|++..|...|.+..+ +.| |+..+..++.++..+. +..++..+++++++.++. |.....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 445666666666666666666666666665 333 4555555555554332 345666666666666655 666666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 768 ELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 768 ~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.|+..+...|++++|...++.|++..|.+.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 6666666666666666666666666666555
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0014 Score=70.31 Aligned_cols=66 Identities=17% Similarity=0.035 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 728 ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 728 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
+..+..++-.+...|++++|...++++++.+ |+...|..++..+...|+.++|...++++...+|.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3444444444444455555555555555443 23445555555555555555555555555555544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00089 Score=55.60 Aligned_cols=90 Identities=19% Similarity=0.196 Sum_probs=50.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 046719 664 LIHCYAEHGDVQKALVLHSEMVDQGIRPDK--MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK----ADTYNILVKG 737 (808)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~ 737 (808)
+..++-..|+.++|+.+|++.++.|+.... ..+..++..+...|++++|..++++.... .|+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 445556666666666666666666554332 24555666666666666666666666542 122 2222333445
Q ss_pred HHccCChhHHHHHHHHHH
Q 046719 738 YCNLKDFGGAYIWYREMF 755 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~ 755 (808)
+...|+.++|+.++-..+
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 556666666666665554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00081 Score=61.11 Aligned_cols=78 Identities=15% Similarity=0.054 Sum_probs=35.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD--KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVK 736 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 736 (808)
.|..++..+...|++++|+..|++.+.....|. ..++..++..+...|++++|+..++++.+ +.| ...++..++.
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~la~ 114 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence 344444444455555555555555544211111 12444555555555555555555555544 222 2333444444
Q ss_pred HHH
Q 046719 737 GYC 739 (808)
Q Consensus 737 ~~~ 739 (808)
++.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.70 E-value=6.1e-05 Score=46.85 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=13.4
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCC
Q 046719 206 VYNVLISGFCKEKKIRDAEKLFDEMCQRKLV 236 (808)
Q Consensus 206 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 236 (808)
+|+.++.+|++.|+++.|.++|++|.+.|+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00088 Score=60.89 Aligned_cols=104 Identities=12% Similarity=0.050 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 694 MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP--KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTN 771 (808)
Q Consensus 694 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 771 (808)
..|..++..+...|++++|...+++++.....+ ...++..++.++...|++++|+..++++++..+. ....+..++.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 356677777777777777777777776532122 1246677777777777777777777777766444 4555666666
Q ss_pred HHH-------hcCChh-------HHHHHHHHHHHcCCCCCc
Q 046719 772 GLK-------QEGKLK-------EAQILCSEISIVGKDAWT 798 (808)
Q Consensus 772 ~l~-------~~g~~~-------~A~~~~~~~~~~~~~~~~ 798 (808)
.+. +.|+++ +|..++++.....|.+.+
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 666 666666 444444445555554443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.077 Score=53.19 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=79.9
Q ss_pred HhHHHHHHHHHHcC-HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHH
Q 046719 625 RTYHPLLSGCIREG-IVAVEKLFNEMLQIN-LVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMT-YNSLIF 701 (808)
Q Consensus 625 ~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~-~~~l~~ 701 (808)
.+|...++...+.. ++.|.++|.++.+.+ ..+++.++++++..++ .|+..-|.++|+.=... -||... -+..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 44555555544444 777777777777766 4566667777776555 56667777777665442 334443 234455
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 702 GHLREGKLSEVKELVNDMKVKGLIPK--ADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 702 ~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
.+..-++-+.|..+|+..+++ +..+ ...|..++.--..-|+...+..+=+++.+.-|+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 556667777777777755433 2333 345666666666677777777766666665444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.68 E-value=6e-05 Score=46.88 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=15.1
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 046719 276 MFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDP 307 (808)
Q Consensus 276 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 307 (808)
+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0012 Score=64.52 Aligned_cols=134 Identities=19% Similarity=0.135 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHH----HCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHH----HCCC-CCCH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMV----DQGIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMK----VKGL-IPKA 728 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~g~-~p~~ 728 (808)
..|..|.+.|.-.|+++.|+..-+.-+ +.|-+.. ...+..|++++.-.|+++.|.+.++... +.|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456667777777888888887655432 3332221 2357788888888899999998888753 3331 1234
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFEN-----GFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
.....|++.|.-..++++|+.+..+=++. +..-....+..|+.++...|..++|+.+.+.-+..
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 56678888888888899998887764421 11224566777888888888888888888776653
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0015 Score=67.07 Aligned_cols=121 Identities=14% Similarity=0.116 Sum_probs=80.2
Q ss_pred CChhhHHHHHHHHHccCCHhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHH
Q 046719 202 PNVFVYNVLISGFCKEKKIRDAEKLFDEMCQR--KLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNS 279 (808)
Q Consensus 202 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 279 (808)
-+......+++.+....+++++..++-+.... ...--..|..++|+.|.+.|..+++..++..=..-|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 35555666677666666777777777766553 1112233556777777777777777777777777777777777777
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhC
Q 046719 280 LLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKC 322 (808)
Q Consensus 280 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 322 (808)
|+..+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777776666555555555544444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0059 Score=65.67 Aligned_cols=84 Identities=20% Similarity=0.022 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 046719 675 QKALVLHSEMVDQG-IRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYRE 753 (808)
Q Consensus 675 ~~A~~~~~~~~~~g-~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 753 (808)
..+.+..++..... .+.+...|..++..+...|++++|...++++++ +.|+...|..++..+...|+.++|...+++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444443321 122344666666666667777777777777777 446666777777777777777777777777
Q ss_pred HHHCCCC
Q 046719 754 MFENGFI 760 (808)
Q Consensus 754 ~~~~~~~ 760 (808)
++..+|.
T Consensus 479 A~~L~P~ 485 (517)
T PRK10153 479 AFNLRPG 485 (517)
T ss_pred HHhcCCC
Confidence 7776554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00031 Score=52.56 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccC-ChhHHHHHHHHHHHCC
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLK-DFGGAYIWYREMFENG 758 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 758 (808)
+..+|..++..+...|++++|+..|+++++ +.| +...|..++.++...| ++++|++.++++++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 345667777777777777777777777776 345 3556677777777777 5777777777777654
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00027 Score=52.05 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=38.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 699 LIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 699 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
++..+...|++++|...|+++++. .| +...+..++.++...|++++|..+|+++++..|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 455666777777777777777663 34 456666777777777777777777777766544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0065 Score=60.47 Aligned_cols=103 Identities=14% Similarity=0.034 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhc-CCHhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-----C
Q 046719 695 TYNSLIFGHLRE-GKLSEVKELVNDMKVK----GLIPK--ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP-----S 762 (808)
Q Consensus 695 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~ 762 (808)
.+..++..|... |++++|+++|+++.+. | .+. ...+..++..+.+.|++++|+++|++........ +
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 344566677777 8999999999998642 2 121 3456788889999999999999999988753321 2
Q ss_pred H-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 763 F-CIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 763 ~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
. ..+...+-++...|+...|.+.+++.....|....
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 2 23445667888899999999999999988776554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.033 Score=48.73 Aligned_cols=132 Identities=10% Similarity=0.058 Sum_probs=99.7
Q ss_pred CcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 046719 621 KPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD---KMTY 696 (808)
Q Consensus 621 ~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd---~~~~ 696 (808)
.|+...-..|..++...| ..+|...|.+...--..-|..+.-.+.++....+++.+|..+++.+.+.. |+ ..+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 455555566677777777 77777777777653345577888888889899999999999999998852 32 2245
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 697 NSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 697 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
..++..+...|++.+|...|+.+.. .-|++..-......+.++|+.++|..-+....+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 5778889999999999999999988 567776666667777889988888776666554
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00014 Score=44.06 Aligned_cols=28 Identities=50% Similarity=0.905 Sum_probs=13.4
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 046719 206 VYNVLISGFCKEKKIRDAEKLFDEMCQR 233 (808)
Q Consensus 206 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 233 (808)
+||.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0047 Score=58.95 Aligned_cols=102 Identities=13% Similarity=0.110 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHCCCCC-CHH
Q 046719 655 VPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREG---KLSEVKELVNDMKVKGLIP-KAD 729 (808)
Q Consensus 655 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p-~~~ 729 (808)
+.|...|..|..+|...|+++.|..-|.+..+ +.| +...+..++.++..+. ...++..++++++. ..| |..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHH
Confidence 67889999999999999999999999999998 444 4557777777766543 36789999999998 456 567
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 730 TYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 730 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
....|+..+...|++.+|...|+.|++..+.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 7888999999999999999999999987654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0024 Score=65.54 Aligned_cols=119 Identities=13% Similarity=0.160 Sum_probs=64.9
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHHhC--CCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 046719 308 DGFTYSMLFDGYSKCGDGEGVMALYEELSGR--GFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTI 385 (808)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 385 (808)
.......+++.+....+++.+..++.+.... ....-..+..++++.|.+.|..+.++.++..-...|+-||..++|.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444445555555555555555555554433 12223344455666666666666666666666666666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046719 386 VSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCE 426 (808)
Q Consensus 386 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 426 (808)
++.+.+.|++..|.++...|...+...+..|+..-+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666665555444444444444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0023 Score=60.17 Aligned_cols=101 Identities=12% Similarity=0.048 Sum_probs=78.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 046719 698 SLIFGHLREGKLSEVKELVNDMKVKGLIP--KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP--SFCIYNELTNGL 773 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~l 773 (808)
..+..+.+.|++.+|...|...++..... .+..+..|+.++..+|++++|..+|..+.+.-|+- -++.+..|+.++
T Consensus 146 ~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~ 225 (262)
T COG1729 146 NAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSL 225 (262)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 33445566778999999998888753111 24567788999999999999999999988854432 357888999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 774 KQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 774 ~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.+.|+.++|...++++++.-|+..+
T Consensus 226 ~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 226 GRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999888777
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0024 Score=63.15 Aligned_cols=128 Identities=10% Similarity=-0.028 Sum_probs=102.4
Q ss_pred HHHHccCCHHHHHHHHHHHHHC-----CCCC---------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHH
Q 046719 666 HCYAEHGDVQKALVLHSEMVDQ-----GIRP---------DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTY 731 (808)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~~~~~-----g~~p---------d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 731 (808)
+.|.+.|++..|...|++++.. +.++ -..+++.|+.++.+.+++.+|++..++.++.+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4677888888888888886642 1111 12357889999999999999999999999853 4578888
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHHHcCCC
Q 046719 732 NILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEA-QILCSEISIVGKD 795 (808)
Q Consensus 732 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A-~~~~~~~~~~~~~ 795 (808)
.--+.+|...|+++.|+..|+++++..|. |..+-..|..+-.+..+.++. .++|..|..+...
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 89999999999999999999999999877 788888888877666665555 8889999876653
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00015 Score=43.84 Aligned_cols=27 Identities=44% Similarity=0.811 Sum_probs=11.6
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 277 FNSLLGGFCKAKRMEEAKSVCKEMEAH 303 (808)
Q Consensus 277 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 303 (808)
|+.++++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0069 Score=50.34 Aligned_cols=95 Identities=21% Similarity=0.096 Sum_probs=76.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 046719 697 NSLIFGHLREGKLSEVKELVNDMKVKGLIPK--ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP--SFCIYNELTNG 772 (808)
Q Consensus 697 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 772 (808)
..+++++-..|+.++|+.++++....|+... ...+..++.++...|++++|..++++.....|.+ +......++.+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 4678888899999999999999999887654 4567789999999999999999999998764432 23444556778
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 046719 773 LKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 773 l~~~g~~~~A~~~~~~~~~ 791 (808)
+...|+.+||..++-..+-
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999877664
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0046 Score=61.22 Aligned_cols=129 Identities=14% Similarity=0.113 Sum_probs=76.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 046719 486 SYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDG-SCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGL 564 (808)
Q Consensus 486 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 564 (808)
+|..+++...+.+..+.|..+|.+.++.+ ..+..+|...... +...++.+.|.++|+..++. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45566666666666666777776666432 1234444444444 22245555577777777765 455666677777777
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 046719 565 CKKGRVMEAEDMLPQITSSGLNPDV---ITYNSLISGYSSLGSSQKCLELYENMKK 617 (808)
Q Consensus 565 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 617 (808)
...|+.+.|+.+|++.+.. +.++. ..|...+..-.+.|+.+.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777654 22222 3677777777777777777777777665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0032 Score=62.31 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHc-cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046719 172 YGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCK-EKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYC 250 (808)
Q Consensus 172 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 250 (808)
|-..++..-+.+..+.|+.+|.++.+.+. .+..+|-.....-.. .++.+.|.++|+...+. +..+...|...++.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 44444444444445555555555543321 122222222222112 33444455555555443 2234444555555555
Q ss_pred hcCChhHHHHHHHHHHhCCCCc---CHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 251 KVGEFEKVSALRERMKRDKVEV---SLVMFNSLLGGFCKAKRMEEAKSVCKEMEA 302 (808)
Q Consensus 251 ~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 302 (808)
+.|+.+.|..+|++.... +.+ ....|...+..=.+.|+++.+..+.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555433 111 123555555555555555555555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0028 Score=61.39 Aligned_cols=98 Identities=19% Similarity=0.125 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDK----MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK----ADT 730 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~ 730 (808)
..|...+..+.+.|++++|+..|+.+++. .|+. ..+..++..|...|++++|...|+++.+. .|+ ...
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dA 219 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHH
Confidence 45555555556679999999999999984 4543 36778999999999999999999999863 333 566
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+..++.++...|++++|..+|+++++..|.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 777888898999999999999999987655
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00048 Score=51.31 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=29.0
Q ss_pred hcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 705 REGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 705 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
+.|++++|+++++++.+ ..| +...+..++.+|.+.|++++|..+++++....
T Consensus 3 ~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45556666666666555 233 45555556666666666666666666665543
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.099 Score=50.38 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046719 384 TIVSGYCRTGDLNRAMLAIQQMENHG--LAPNCITFNTLIDKFCELGEMDKAEEWVKRM 440 (808)
Q Consensus 384 ~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 440 (808)
.+.+.|.+.|.+..|..-++.+.+.= .+........++.+|...|..++|......+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34555666676666666666666531 1222334455566666666666666655444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.068 Score=51.49 Aligned_cols=58 Identities=12% Similarity=0.167 Sum_probs=34.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 046719 385 IVSGYCRTGDLNRAMLAIQQMENHGLAPNCITF---NTLIDKFCELGEMDKAEEWVKRMLEK 443 (808)
Q Consensus 385 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~ 443 (808)
....+.+.|++++|.+.|+.+....+.. .... -.++.++.+.+++++|...+++.++.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3444456677777777777776643322 2221 34455666777777777777776665
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0033 Score=50.01 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CcCHhhHHHHHHHHH
Q 046719 139 VLLECLVRCNQYDRALDLFDEIVCMGF-RPDKFTYGKAVQAAV 180 (808)
Q Consensus 139 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 180 (808)
..|..+...+++.....+|+.+.+.|+ .|++.+|+.++.+.+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~ 72 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIA 72 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 344444444555555555555555555 455555555555443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0036 Score=49.80 Aligned_cols=74 Identities=18% Similarity=0.268 Sum_probs=44.6
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCcCHhhHHHHHH
Q 046719 107 SILSSAKLPSEALQLYASTKADGT-RLSLDSINVLLECLVRCN--------QYDRALDLFDEIVCMGFRPDKFTYGKAVQ 177 (808)
Q Consensus 107 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 177 (808)
..+...+++...-.+|..+++.|+ .|+..+|+.++++..+.. +.-..+.+|+.|+..+.+|+..+|+.++.
T Consensus 33 ~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~ 112 (120)
T PF08579_consen 33 NSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLG 112 (120)
T ss_pred HHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 334555777777777777777777 677777777777766552 12334445555555555555555555555
Q ss_pred HHH
Q 046719 178 AAV 180 (808)
Q Consensus 178 ~~~ 180 (808)
.+.
T Consensus 113 ~Ll 115 (120)
T PF08579_consen 113 SLL 115 (120)
T ss_pred HHH
Confidence 443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.052 Score=50.30 Aligned_cols=130 Identities=15% Similarity=0.237 Sum_probs=69.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHH-----
Q 046719 137 INVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLI----- 211 (808)
Q Consensus 137 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~----- 211 (808)
-+.+++++.-.|.|.-...++.+.++..+..++.....+.+.-.+.||.+.|...|+++.+..-..|....+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 445555555566666666666666665555556666666666666666666666666555432223333333322
Q ss_pred HHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046719 212 SGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKR 267 (808)
Q Consensus 212 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 267 (808)
..|.-++++.+|...|++++..+.. |+..-|.-.-+..-.|+..+|....+.|+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2333455566666666665554322 444444433333344556666666666554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0091 Score=60.87 Aligned_cols=150 Identities=15% Similarity=0.026 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHc---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 639 IVAVEKLFNEMLQI-NLVPD-LLVYNALIHCYAE---------HGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREG 707 (808)
Q Consensus 639 ~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g 707 (808)
.+.|..+|.+.+.. .+.|+ ...|..+..++.. .....+|.++.++.++.+ +-|......++.++...|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 67888899999832 24555 4566666555432 234677888889998853 336778888888888889
Q ss_pred CHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCChhHHHHH
Q 046719 708 KLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTN-GLKQEGKLKEAQIL 785 (808)
Q Consensus 708 ~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~g~~~~A~~~ 785 (808)
+++.|...|+++.. +.|| ..+|...+..+.-.|+.++|.+.++++++..|..-......+.- .|+.. ..++|+++
T Consensus 353 ~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 99999999999988 6776 67788888888899999999999999998876644455555544 55555 67888888
Q ss_pred HHHHHHc
Q 046719 786 CSEISIV 792 (808)
Q Consensus 786 ~~~~~~~ 792 (808)
+-+-.+.
T Consensus 430 ~~~~~~~ 436 (458)
T PRK11906 430 YYKETES 436 (458)
T ss_pred Hhhcccc
Confidence 7665443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0047 Score=55.83 Aligned_cols=50 Identities=28% Similarity=0.345 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHH-----hcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 046719 237 PTRVTYNTLVDGYC-----KVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCK 286 (808)
Q Consensus 237 p~~~~~~~li~~~~-----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 286 (808)
.|-.+|..+|+.|. |.|.++-....+..|.+.|+..|..+|+.|+..+=+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 35666666666665 346666666667777777777777777777776643
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.093 Score=52.96 Aligned_cols=164 Identities=16% Similarity=0.133 Sum_probs=94.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCC---CCcCHHhHHHHHHHHHH---cC-HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 593 NSLISGYSSLGSSQKCLELYENMKKLG---IKPSLRTYHPLLSGCIR---EG-IVAVEKLFNEMLQINLVPDLLVYNALI 665 (808)
Q Consensus 593 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~---~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 665 (808)
..++-+|....+++..+++.+.+.... +.-....-....-++.+ .| .++|.+++..++.....+++.+|..++
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344556888888888888888887641 11112222233444555 66 888888888866555567777777777
Q ss_pred HHHH----c-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh----HHHHHHHH----HHHCCCC-C-
Q 046719 666 HCYA----E-----HGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLS----EVKELVND----MKVKGLI-P- 726 (808)
Q Consensus 666 ~~~~----~-----~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~----~A~~~~~~----~~~~g~~-p- 726 (808)
..|- . ....++|+..|.+.-+ +.||..+-..++..+...|... +..++.-+ +.++|.. +
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6653 2 1246777777777766 4566554334444444444322 22222211 1133322 2
Q ss_pred -CHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 727 -KADTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 727 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
+-..+..++.+..-.|++++|.+.+++|.+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 23344466777777777777777777777653
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0043 Score=61.49 Aligned_cols=100 Identities=13% Similarity=-0.026 Sum_probs=85.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHC-----CCCCC---------HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH
Q 046719 698 SLIFGHLREGKLSEVKELVNDMKVK-----GLIPK---------ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSF 763 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 763 (808)
.-++.|.+.|++..|...|++++.. +..+. ..++..+..++.+.+++.+|++...+.++.++. |.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~ 291 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NV 291 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-ch
Confidence 4566788999999999999886542 11111 235678888999999999999999999999877 99
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 764 CIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 764 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
..+++-+++|...|+++.|+..|+++++..|+|-+
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka 326 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKA 326 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence 99999999999999999999999999999999866
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.021 Score=56.28 Aligned_cols=131 Identities=16% Similarity=0.100 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-----CcCHH
Q 046719 556 TFNALINGLCKKGRVMEAEDMLPQITS----SGLN-PDVITYNSLISGYSSLGSSQKCLELYENMKKLGI-----KPSLR 625 (808)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~ 625 (808)
.|..|.+.|.-.|+++.|+...+.-+. .|-. .....+..+.+++.-.|+++.|.+.|+......+ .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 345555556666777777665544321 1211 1124566677777777777777777765543211 12233
Q ss_pred hHHHHHHHHHHcC-HHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 046719 626 TYHPLLSGCIREG-IVAVEKLFNEMLQI-----NLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVD 686 (808)
Q Consensus 626 ~~~~l~~~~~~~~-~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 686 (808)
+..+|.+.|.-.. ++.|...+.+.+.. +..-....+.+|..+|...|..++|+.+.+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4444555554444 66666655544321 1112345666677777777777777766655443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.11 Score=54.60 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=21.7
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHH
Q 046719 293 AKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEE 334 (808)
Q Consensus 293 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 334 (808)
.+.-+++|.++|-.|+... +...++-.|.+.+|.++|.+
T Consensus 619 li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 619 LISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 3344556666666666543 34455556666666666553
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0033 Score=47.55 Aligned_cols=58 Identities=14% Similarity=0.039 Sum_probs=38.5
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 701 FGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 701 ~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
..|.+.+++++|.+.++.+++ +.| ++..|...+.++.+.|++++|...++++++.+|.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 456667777777777777766 334 4555666677777777777777777777766554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.064 Score=54.93 Aligned_cols=160 Identities=14% Similarity=0.158 Sum_probs=112.6
Q ss_pred HHH--HHHHHHHHc-----CCCHHHHHHHHHHHHHC-CCCcC-HHhHHHHHHHHHH---------cC-HHHHHHHHHHHH
Q 046719 590 ITY--NSLISGYSS-----LGSSQKCLELYENMKKL-GIKPS-LRTYHPLLSGCIR---------EG-IVAVEKLFNEML 650 (808)
Q Consensus 590 ~~~--~~l~~~~~~-----~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~---------~~-~~~a~~~~~~~~ 650 (808)
..| ..++.+... ....+.|+.+|.+.... .+.|+ ...|..+...+.. .. ..+|.++.++.+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 555555543 22356788899998822 34565 3444443333211 11 567778888888
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-
Q 046719 651 QINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA- 728 (808)
Q Consensus 651 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~- 728 (808)
+.+ +.|......+..++.-.|+++.|...|++... +.||.. +|...++.+.-.|+.++|.+.+++..+ +.|..
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~ 406 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRR 406 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhh
Confidence 875 66888888888888888999999999999999 678765 888899999999999999999999888 66753
Q ss_pred --HHHHHHHHHHHccCChhHHHHHHHHHH
Q 046719 729 --DTYNILVKGYCNLKDFGGAYIWYREMF 755 (808)
Q Consensus 729 --~~~~~l~~~~~~~g~~~~A~~~~~~~~ 755 (808)
......++.|+. ...++|+++|-+-.
T Consensus 407 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 434 (458)
T PRK11906 407 KAVVIKECVDMYVP-NPLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHHHHHcC-CchhhhHHHHhhcc
Confidence 333344556655 45678887776544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0036 Score=48.07 Aligned_cols=61 Identities=25% Similarity=0.277 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCC--CCCC----HHHHHHHHHHHHccCChhHHHHHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKG--LIPK----ADTYNILVKGYCNLKDFGGAYIWYREMF 755 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 755 (808)
+++.++..|...|++++|+.+++++++.. ..++ ..++..++.++...|++++|++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555555555555555543210 1111 2233444444444444444444444443
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.91 Score=49.77 Aligned_cols=176 Identities=17% Similarity=0.201 Sum_probs=116.9
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 046719 207 YNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTL----VDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLG 282 (808)
Q Consensus 207 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l----i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 282 (808)
.-.-++.+++...++.|..+-.. .+. |..+...+ .+-+.+.|++++|...|-+.+.. ++|. .+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 44566777777788888777543 222 33333333 34456889999999888776543 3332 4566
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHH
Q 046719 283 GFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEI 362 (808)
Q Consensus 283 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 362 (808)
-|....++.+-..+++.+.+.|+. +...-+.|+.+|.+.++.++..++.+... .|.. .+-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 777778888888889999999886 56666889999999999998887776654 3221 1123446677777777787
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046719 363 AEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQM 405 (808)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 405 (808)
|..+-.+... +......+ +-..|++++|+..+..+
T Consensus 482 a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 7776555432 23233333 34568899999888775
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.07 Score=46.42 Aligned_cols=92 Identities=8% Similarity=-0.118 Sum_probs=75.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 046719 663 ALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNL 741 (808)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 741 (808)
....-+...|++++|..+|.-+.-. .| |..-|..|+.++...+++++|+..+..+...+ ..|+......+.++...
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHh
Confidence 3445567899999999999998874 33 44567789999999999999999999986643 24566677889999999
Q ss_pred CChhHHHHHHHHHHHC
Q 046719 742 KDFGGAYIWYREMFEN 757 (808)
Q Consensus 742 g~~~~A~~~~~~~~~~ 757 (808)
|+.+.|...|+.+++.
T Consensus 119 ~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 119 RKAAKARQCFELVNER 134 (165)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999999873
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.011 Score=53.50 Aligned_cols=103 Identities=21% Similarity=0.367 Sum_probs=52.0
Q ss_pred CHhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 046719 378 DEVMFNTIVSGYCR-----TGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTN 452 (808)
Q Consensus 378 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 452 (808)
+-.+|..+++.|.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- |.. .+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-~f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-FF 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-HH
Confidence 55566666666553 24555555555555555555566666655555443 2111 010 00
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 046719 453 NTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCK 499 (808)
Q Consensus 453 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 499 (808)
.++-.-| -.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 109 Q~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1100001 12344566666666666666666666666666655444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.66 Score=46.86 Aligned_cols=468 Identities=13% Similarity=0.144 Sum_probs=233.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 046719 118 ALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEK 197 (808)
Q Consensus 118 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 197 (808)
-+++-+++.+. |.++.+|-.|+.-|..+|..++-+++++++..- +..-..+|..-+.+-....++.....+|.+.++
T Consensus 28 ~lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 28 ELRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 33555556543 568889999999999999999999999999652 222456788888877777899999999999988
Q ss_pred CCCCCChhhHHHHHHHHHccCCHh--H----HHHHHHHHHh-CCCCCCHH-HHHHHHHHHH---hcC------ChhHHHH
Q 046719 198 SRTRPNVFVYNVLISGFCKEKKIR--D----AEKLFDEMCQ-RKLVPTRV-TYNTLVDGYC---KVG------EFEKVSA 260 (808)
Q Consensus 198 ~~~~~~~~~~~~l~~~~~~~g~~~--~----A~~~~~~m~~-~~~~p~~~-~~~~li~~~~---~~g------~~~~a~~ 260 (808)
.. .+...|...++-.-+.+..- + -.+.|+-... .++.|-.. .|+..+..+- ..| +.|....
T Consensus 105 k~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~ 182 (660)
T COG5107 105 KS--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRN 182 (660)
T ss_pred hh--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 64 35667777776554433211 1 1222332222 34444332 3444333221 223 3444555
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHh--C
Q 046719 261 LRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSG--R 338 (808)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~ 338 (808)
.+.++....+ |++++..+-|+..... .+..|-...+. -..--+-.|.+.++++.. .
T Consensus 183 ~Y~ral~tP~-----------------~nleklW~dy~~fE~e---~N~~TarKfvg--e~sp~ym~ar~~yqe~~nlt~ 240 (660)
T COG5107 183 GYMRALQTPM-----------------GNLEKLWKDYENFELE---LNKITARKFVG--ETSPIYMSARQRYQEIQNLTR 240 (660)
T ss_pred HHHHHHcCcc-----------------ccHHHHHHHHHHHHHH---HHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHhc
Confidence 5555543221 2222222222211110 00000000000 000011123333333221 1
Q ss_pred CCCc----Ch-----------hcHHHHHHHHHhcC------ChHH-HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 046719 339 GFRI----NS-----------YTCSILLNALCKEG------KVEI-AEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLN 396 (808)
Q Consensus 339 ~~~~----~~-----------~~~~~l~~~~~~~g------~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 396 (808)
|... +. .-|...|..-...| -... .--++++.+.. +.-....|--.-..+...++-+
T Consensus 241 Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q 319 (660)
T COG5107 241 GLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQ 319 (660)
T ss_pred cccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHH
Confidence 1110 00 11222222211111 0111 11112222221 1112233433333445566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hcCChHHHHHHH
Q 046719 397 RAMLAIQQMENHGLAPNCITFNT-LIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYG---RMGHFDKCFQIL 472 (808)
Q Consensus 397 ~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~ 472 (808)
.|+...+..... .|. .+. +...|--..+-+.....|+..... ...--..+..-. .-|+++.-.+++
T Consensus 320 ~al~tv~rg~~~--sps---L~~~lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell 389 (660)
T COG5107 320 KALKTVERGIEM--SPS---LTMFLSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELL 389 (660)
T ss_pred HHHHHHHhcccC--CCc---hheeHHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHH
Confidence 666655543322 122 221 222222233334443334333211 000000000000 012232222222
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 046719 473 EEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRG-VLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMG 551 (808)
Q Consensus 473 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 551 (808)
-.-. ..-..+|...++...+..-.+.|..+|-++.+.+ +.+++.++++++..++ .|+..-|..+|+.-+.. ++
T Consensus 390 ~kr~----~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~ 463 (660)
T COG5107 390 LKRI----NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FP 463 (660)
T ss_pred HHHH----hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CC
Confidence 1111 1235567778888888888888999999998887 5667778888887765 46777888888877665 33
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHH
Q 046719 552 PTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPD--VITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHP 629 (808)
Q Consensus 552 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 629 (808)
.+..-.+-.+..+...++-..|..+|+..+.. +..+ -..|..+|+.-..-|+...+..+=+.|.+. -|...+...
T Consensus 464 d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~ev 540 (660)
T COG5107 464 DSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEV 540 (660)
T ss_pred CchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHH
Confidence 34444455667778888888999999866543 1222 356888888778888888888777777763 344444333
Q ss_pred HHH
Q 046719 630 LLS 632 (808)
Q Consensus 630 l~~ 632 (808)
+..
T Consensus 541 F~S 543 (660)
T COG5107 541 FTS 543 (660)
T ss_pred HHH
Confidence 333
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.23 Score=46.54 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=29.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 046719 386 VSGYCRTGDLNRAMLAIQQMENHGLA--PNCITFNTLIDKFCELGEMDKAEEWVKRMLEK 443 (808)
Q Consensus 386 i~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 443 (808)
...+...|++.+|+..|+.+...... --....-.++.++.+.|+++.|...++..++.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33445566666666666666554221 11223344555566666666666666665554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.61 Score=45.05 Aligned_cols=85 Identities=22% Similarity=0.188 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 046719 533 GRIKDAFKFFDEMVKREMG-PTLVTFNALINGLCKKGRVMEAEDMLPQITSS-GLNPDVITYNSLISGYSSLGSSQKCLE 610 (808)
Q Consensus 533 g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 610 (808)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+.+..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444433211 01344444555555555555555555555431 112233344444444455555555555
Q ss_pred HHHHHHH
Q 046719 611 LYENMKK 617 (808)
Q Consensus 611 ~~~~~~~ 617 (808)
.+.....
T Consensus 117 ~~~~~~~ 123 (291)
T COG0457 117 LLEKALA 123 (291)
T ss_pred HHHHHHc
Confidence 5555544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.35 Score=45.35 Aligned_cols=60 Identities=10% Similarity=0.182 Sum_probs=39.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046719 419 TLIDKFCELGEMDKAEEWVKRMLEKGVS--PNVKTNNTLIDGYGRMGHFDKCFQILEEMENS 478 (808)
Q Consensus 419 ~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 478 (808)
.....+...|++++|...|+.+...-.. --....-.++.++.+.|+++.|...+++....
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445566778888888888888765221 12344556677778888888888888887654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0032 Score=48.34 Aligned_cols=63 Identities=22% Similarity=0.271 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFEN----GFI-PS-FCIYNELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
.++..++.+|...|++++|+.+++++++. |.. |+ ..++..++.++...|++++|+.++++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666777777777777777777776642 221 11 44566777777777777777777777654
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0086 Score=60.94 Aligned_cols=98 Identities=14% Similarity=0.054 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHH
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA----DTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYN 767 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 767 (808)
+...++.++.+|.+.|++++|+..|++.++ +.|+. .+|+.++.+|...|++++|+..++++++.+ .+. |.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~~---f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NLK---FS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-chh---HH
Confidence 455899999999999999999999999998 67864 358999999999999999999999999863 211 21
Q ss_pred HHHH--HHHhcCChhHHHHHHHHHHHcCCC
Q 046719 768 ELTN--GLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 768 ~l~~--~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
.+.. .+..-.+.++..++++...+-+..
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1111 122233456777788888777643
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.12 Score=55.30 Aligned_cols=120 Identities=16% Similarity=0.041 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHccCChhHH
Q 046719 672 GDVQKALVLHSEMVDQGIRPDKMTYN-SLIFGHLREGKLSEVKELVNDMKVKG--L-IPKADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 672 g~~~~A~~~~~~~~~~g~~pd~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~g--~-~p~~~~~~~l~~~~~~~g~~~~A 747 (808)
...+.|.++++.+.+. -|+...|. .-+..+...|++++|++.++++.+.. . +.....+.-++.++.-..+|++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 4455555555555552 34443322 33444555555666666555543210 0 01123344555556666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-------hHHHHHHHHHHHcC
Q 046719 748 YIWYREMFENGFIPSFCIYNELTNGLKQEGKL-------KEAQILCSEISIVG 793 (808)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~-------~~A~~~~~~~~~~~ 793 (808)
.+.+.++.+..--......+..+-++...|+. ++|..++.++.+..
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 66666665532221122222334455556655 66666666665433
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.028 Score=57.35 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046719 655 VPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM----TYNSLIFGHLREGKLSEVKELVNDMKVK 722 (808)
Q Consensus 655 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 722 (808)
+.+...++.+..+|.+.|++++|+..|++.++ +.|+.. +|..++.+|...|++++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44678999999999999999999999999999 677753 5899999999999999999999999984
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0047 Score=40.88 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELT 770 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 770 (808)
.+|..++..|...|++++|.++|+++++..|+ |+..+..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 34566677777777777777777777776665 666665554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.76 Score=46.59 Aligned_cols=163 Identities=10% Similarity=0.019 Sum_probs=83.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCcCHHhHHHH
Q 046719 557 FNALINGLCKKGRVMEAEDMLPQITSSG---LNPDVITYNSLISGYSS---LGSSQKCLELYENMKKLGIKPSLRTYHPL 630 (808)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 630 (808)
...++-.|....+++.-+++++.+...- +.-....--..+-++.+ .|+.++|++++..+......++..++..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3344445667777777777777776521 00011111223334445 67777777777775554555666666666
Q ss_pred HHHHH----H---cC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----HHHHHHHH---H-HHHHCCCC--
Q 046719 631 LSGCI----R---EG---IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGD----VQKALVLH---S-EMVDQGIR-- 690 (808)
Q Consensus 631 ~~~~~----~---~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~---~-~~~~~g~~-- 690 (808)
...|- . .+ .+.|...|.+.-+. .|+...--.++..+...|. -.+..++- . .+.++|..
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 65542 1 11 55666666666553 3443322222223333332 12223332 1 11123322
Q ss_pred -CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 691 -PDKMTYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 691 -pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
.|...+.+++.++.-.|+.++|.+..++|.+
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 2333455667777777777777777777765
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.63 Score=43.51 Aligned_cols=133 Identities=12% Similarity=0.091 Sum_probs=93.4
Q ss_pred HHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHH
Q 046719 628 HPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQ-----GIRPDKMTYNSLIF 701 (808)
Q Consensus 628 ~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~pd~~~~~~l~~ 701 (808)
+.++..+...+ +.-...++++.++.+.+.++.....|+..-.+.|+.+.|...|++..+. ++.-+.........
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34444444445 6777778888888766677888888888888899999999999876543 22323334445556
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 046719 702 GHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP 761 (808)
Q Consensus 702 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 761 (808)
.+.-++++.+|...+.++...+ ..|+..-+.-+-++.-.|+..+|++.++.|.+..|.|
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 6777888889998888887642 2345555555555556889999999999998876654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.58 E-value=1.3 Score=46.88 Aligned_cols=183 Identities=15% Similarity=0.075 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 046719 589 VITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLV--PDLLVYNALI 665 (808)
Q Consensus 589 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 665 (808)
..+|...++.-.+.|+.+.+.-+|+...-- +.-=...|--.+.-....| .+-+..++....+.-.+ |......+.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~- 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR- 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH-
Confidence 356666666666677777766666665421 1111122222222223334 55555444444332222 222222222
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHH---HHHHHHHHCCCCCC--HHHHHHHHHH-H
Q 046719 666 HCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVK---ELVNDMKVKGLIPK--ADTYNILVKG-Y 738 (808)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~~~g~~p~--~~~~~~l~~~-~ 738 (808)
..-..|+++.|..+++.+.+. . |+.+ .-..-+....+.|..+.+. +++....+....+. ...+...... +
T Consensus 375 -f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 -FEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred -HHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 223346777777777777664 3 5543 2223344555666666665 33333222111111 1111111111 1
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 739 CNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG 777 (808)
Q Consensus 739 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 777 (808)
.-.++.++|..++.++.+..+. +...|..+++.....+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~-~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPD-CKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCc-cHHHHHHHHHHHHhCC
Confidence 2246677777777777765444 5555555555554443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.061 Score=47.42 Aligned_cols=68 Identities=22% Similarity=0.253 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHH-----HCCCCCCHHH
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMF-----ENGFIPSFCI 765 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~ 765 (808)
...++..+...|++++|..++++++. ..| |...|..++.+|...|+..+|.+.|+++. +.|+.|++.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34555566667777777777777666 344 45566677777777777777777666653 2466665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.028 Score=49.69 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=56.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 046719 665 IHCYAEHGDVQKALVLHSEMVDQGIRPDK-----MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGY 738 (808)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~~~~~g~~pd~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 738 (808)
.+-+.+.|++++|..-|..+++. +++-. +.|..-+.++.+.+.++.|+.-..+.++ +.|+ ......-+.+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAY 178 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHH
Confidence 44456677777777777777764 33221 2344455566677777777777777666 3342 23333445666
Q ss_pred HccCChhHHHHHHHHHHHCCCC
Q 046719 739 CNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 739 ~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
.+..++++|+.-|+++++..|.
T Consensus 179 ek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcc
Confidence 6777777777777777766554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.48 E-value=1.7 Score=47.81 Aligned_cols=175 Identities=17% Similarity=0.196 Sum_probs=114.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHH
Q 046719 103 NILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVL----LECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQA 178 (808)
Q Consensus 103 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (808)
..-+..+.+...++.|..+-... + .+..+...+ +.-+.+.|++++|...|-+.+.. .. -..++.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le-----~s~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LE-----PSEVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CC-----hHHHHHH
Confidence 44567777888888888775433 2 334333333 44456789999999988776532 11 2345666
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 046719 179 AVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKV 258 (808)
Q Consensus 179 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 258 (808)
|....+..+-..+++.+.+.|.. +...-+.|+.+|.+.++.+.-.++.+... .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 66667777777888888888875 66667889999999999887666655443 2211 11134556666777777777
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 046719 259 SALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEM 300 (808)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 300 (808)
..+-..... +......++. ..|++++|++.+..+
T Consensus 483 ~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 776665422 3444444444 568899999988765
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.054 Score=44.28 Aligned_cols=95 Identities=17% Similarity=0.034 Sum_probs=66.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcc
Q 046719 665 IHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK---ADTYNILVKGYCNL 741 (808)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~ 741 (808)
.-+++..|+++.|++.|.+.+.. .+-....||.-..++.-+|+.++|++=++++++..-... -..|..-+..|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34567778888888888888873 233555788888888888888888888888776421112 23355556677778
Q ss_pred CChhHHHHHHHHHHHCCCC
Q 046719 742 KDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 742 g~~~~A~~~~~~~~~~~~~ 760 (808)
|+-+.|..-|+.+-+.|-+
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 8888888888888777643
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.37 Score=50.79 Aligned_cols=51 Identities=10% Similarity=-0.070 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREM 754 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 754 (808)
+...+..-+.+...+.-|.++|++|-+. ..++......++|++|..+.++.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhC
Confidence 4444444444555555566666555321 23455555666666666655554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=1.3 Score=42.62 Aligned_cols=224 Identities=21% Similarity=0.153 Sum_probs=108.5
Q ss_pred CCHHHHHHHHHHHHhCCCCc-chhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 046719 498 CKLLEAEIVLKDMENRGVLP-NAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR-EMGPTLVTFNALINGLCKKGRVMEAED 575 (808)
Q Consensus 498 ~~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 575 (808)
+....+...+.......... ....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44555555555554432211 2455666666677777777777777666542 223345555666666666677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCC
Q 046719 576 MLPQITSSGLNPDVITYNSLIS-GYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINL 654 (808)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ 654 (808)
.+.........+ ......... .+...|++++|...+.+... ..|. .
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~------------------------------~ 163 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPE------------------------------L 163 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC------------------------------c
Confidence 777776543222 111222222 45556666666666666533 1121 0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHH
Q 046719 655 VPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYN 732 (808)
Q Consensus 655 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~ 732 (808)
......+......+...++.++|...+.+..+. .+. ....+..+...+...++++.|...+..... ..|+ ...+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~ 240 (291)
T COG0457 164 NELAEALLALGALLEALGRYEEALELLEKALKL-NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALY 240 (291)
T ss_pred cchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHh
Confidence 000111111111134445555555555555542 111 133444555555555555555555555544 2232 23333
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHC
Q 046719 733 ILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 733 ~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
.+...+...+.++++...+.+..+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 241 NLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333333444555555555555543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.093 Score=49.72 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=79.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCC-CHHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDK---MTYNSLIFGHLREGKLSEVKELVNDMKVK-GLIP-KADTYNIL 734 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p-~~~~~~~l 734 (808)
.|+.-+. +.+.|++.+|..-|...++. .+-+. ..+..|+.++...|++++|..+|..+.+. +-.| -+..+..|
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~-YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKK-YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHc-CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4665554 45688899999999999986 23222 24557999999999999999999998753 2223 36889999
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCH
Q 046719 735 VKGYCNLKDFGGAYIWYREMFENGFIPSF 763 (808)
Q Consensus 735 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 763 (808)
+.+..+.|+.++|..+|++..+.-|..+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 99999999999999999999998766333
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.13 E-value=1.7 Score=43.63 Aligned_cols=62 Identities=19% Similarity=0.255 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHH
Q 046719 137 INVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLIS 212 (808)
Q Consensus 137 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 212 (808)
|..+...-...|+.+.|..+++ ..|+.. .-|..+.+.|+.+.| +.+..+.| .||. +|..|+.
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~------~Ep~~~---~qVplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~ 64 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLE------LEPRAS---KQVPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLH 64 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHH------cCCChH---HHHHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHH
Confidence 4455566666777777776654 223321 223445555655555 34444443 2333 4445554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.1 Score=42.67 Aligned_cols=93 Identities=17% Similarity=0.092 Sum_probs=58.4
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHH-CCCCCCH--HHHHHHHHHHHh
Q 046719 700 IFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFE-NGFIPSF--CIYNELTNGLKQ 775 (808)
Q Consensus 700 ~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~--~~~~~l~~~l~~ 775 (808)
+.++...|+++.|++.|.+.+. +-| ++..|+.-..++.-+|+.++|+.-+.++++ .|.+.-. ..|..-+..|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3455666777777777777666 333 566677777777777777777777777776 3444221 234444556666
Q ss_pred cCChhHHHHHHHHHHHcCC
Q 046719 776 EGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 776 ~g~~~~A~~~~~~~~~~~~ 794 (808)
.|+.+.|..-|+.+-..|.
T Consensus 128 ~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGS 146 (175)
T ss_pred hCchHHHHHhHHHHHHhCC
Confidence 7777777777776666553
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.21 Score=48.79 Aligned_cols=165 Identities=16% Similarity=0.167 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCcCH---HhHHHHHHHHHHcC-HHHHHHHHHHHHHCCC---CC--CHHH
Q 046719 591 TYNSLISGYSSLGSSQKCLELYENMKKL-GIKPSL---RTYHPLLSGCIREG-IVAVEKLFNEMLQINL---VP--DLLV 660 (808)
Q Consensus 591 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~---~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~---~~--~~~~ 660 (808)
.|..+..++.+..++.+++.+-+.-... |..|.. ....++..+....+ ++.+.+.|+...+.-. .| ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444445555555555555544433322 222211 11222333333344 7778888877765311 11 2346
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC--CCCC-CH------HHHHHHHHHHHhcCCHhHHHHHHHHHHH----CCCCCC
Q 046719 661 YNALIHCYAEHGDVQKALVLHSEMVDQ--GIRP-DK------MTYNSLIFGHLREGKLSEVKELVNDMKV----KGLIPK 727 (808)
Q Consensus 661 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p-d~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~ 727 (808)
+..|...|.+..++++|+-+..++.+. .+.. |. .+...|..++...|.+-+|.+..++..+ .|-.+.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 778888888888888888777766542 1111 21 1334567778888888888888877644 332221
Q ss_pred -HHHHHHHHHHHHccCChhHHHHHHHHHH
Q 046719 728 -ADTYNILVKGYCNLKDFGGAYIWYREMF 755 (808)
Q Consensus 728 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 755 (808)
......+++.|...|+.+.|..-|+.+.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2234577888888899888888887765
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.19 Score=42.72 Aligned_cols=109 Identities=10% Similarity=0.054 Sum_probs=51.6
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccC
Q 046719 668 YAEHGDVQKALVLHSEMVDQGIRPDK---MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA--DTYNILVKGYCNLK 742 (808)
Q Consensus 668 ~~~~g~~~~A~~~~~~~~~~g~~pd~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g 742 (808)
..+.|++++|.+.|+.+..+ .+... ..-..|+.+|.+.|++++|...+++.++ +.|+. .-|.....+++...
T Consensus 20 ~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccHHHHHHHHHHHH
Confidence 34456666666666665553 22221 1333555566666666666666666555 33321 12222222322211
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 046719 743 DFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAW 797 (808)
Q Consensus 743 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 797 (808)
..+ ..+..+. +.+-|. +...+|...|++++..-|+..
T Consensus 97 ~~~---~~~~~~~--~~drD~-------------~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 97 QDE---GSLQSFF--RSDRDP-------------TPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred Hhh---hHHhhhc--ccccCc-------------HHHHHHHHHHHHHHHHCcCCh
Confidence 111 1222222 111111 125688889999988877754
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0069 Score=37.22 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=26.5
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 046719 751 YREMFENGFIPSFCIYNELTNGLKQEGKLKEAQ 783 (808)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~ 783 (808)
|+++++..|. ++..|+.|+..|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 5677887777 8888888888888888888885
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.13 Score=43.69 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLI-P-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNG 772 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 772 (808)
.+-.-+....+.|++++|++.|+.+...-.. | ....-..++.+|.+.|++++|+..+++.++..|.-....|.....+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 3445566667788888888888887764211 1 2455667888888888888888888888887665333444444444
Q ss_pred H
Q 046719 773 L 773 (808)
Q Consensus 773 l 773 (808)
|
T Consensus 92 L 92 (142)
T PF13512_consen 92 L 92 (142)
T ss_pred H
Confidence 3
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.85 E-value=3.5 Score=44.87 Aligned_cols=89 Identities=16% Similarity=0.114 Sum_probs=52.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCH--hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 046719 174 KAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKI--RDAEKLFDEMCQRKLVPTRVTYNTLVDGYCK 251 (808)
Q Consensus 174 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 251 (808)
.++..++..+.+..|+++-..+...-.. ...+|.....-+.+..+. +++.+..++=..... .+.++|..+..-...
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHh
Confidence 4677777888888888887777542111 245566666656554322 223333222222212 345677777777778
Q ss_pred cCChhHHHHHHHH
Q 046719 252 VGEFEKVSALRER 264 (808)
Q Consensus 252 ~g~~~~a~~~~~~ 264 (808)
.|+++-|..+++.
T Consensus 520 ~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 520 EGRFELARKLLEL 532 (829)
T ss_pred cCcHHHHHHHHhc
Confidence 8888888877764
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.84 E-value=2.4 Score=42.71 Aligned_cols=107 Identities=18% Similarity=0.172 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 046719 416 TFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLC 495 (808)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 495 (808)
+.+.-+.-+...|+...|.++-.+.. -|+...|...+.+++..++|++-..+... +.++..|-..+..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 33444455555666666665544432 24666666666777777776655544321 224466666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHH
Q 046719 496 KDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFF 542 (808)
Q Consensus 496 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 542 (808)
+.|+..+|..+...+ .+..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 777766666655541 1134455666667766666553
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.029 Score=53.91 Aligned_cols=94 Identities=11% Similarity=0.034 Sum_probs=56.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 046719 664 LIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLK 742 (808)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 742 (808)
-.+-|.++|.+++|+..|.+.+. +.| |.+++..-+.+|.+..++..|..=.+.++..+ ..-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 34556777777777777777666 445 66666666777777777776666666554421 011233444444445566
Q ss_pred ChhHHHHHHHHHHHCCCC
Q 046719 743 DFGGAYIWYREMFENGFI 760 (808)
Q Consensus 743 ~~~~A~~~~~~~~~~~~~ 760 (808)
+..+|.+-++.+++..|.
T Consensus 180 ~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK 197 (536)
T ss_pred hHHHHHHhHHHHHhhCcc
Confidence 666666666666665433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.09 Score=46.31 Aligned_cols=69 Identities=19% Similarity=0.324 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCCCChh
Q 046719 136 SINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEK-----SRTRPNVF 205 (808)
Q Consensus 136 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 205 (808)
+...++..+...|++++|..+...++...+. |...|..++.+|...|+...|.++|+++.+ .|+.|+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 3445566666667777777777766665554 666666777777777777777776666543 25555543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.68 Score=47.79 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=27.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHHhcCCHhHHHHHHHHH
Q 046719 664 LIHCYAEHGDVQKALVLHSEMVDQGIRP-DK-MTYNSLIFGHLREGKLSEVKELVNDM 719 (808)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 719 (808)
+..++.+.|+.+||++.+++|.+. .++ |. .+...|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke-~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKE-FPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhh-CCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 444444555555555555555542 122 11 14445555555555555555555554
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.84 Score=43.85 Aligned_cols=143 Identities=15% Similarity=0.096 Sum_probs=87.9
Q ss_pred HHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 046719 634 CIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEV 712 (808)
Q Consensus 634 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A 712 (808)
....| ..++..+|....... +-+....-.++.+|...|+.+.|..++..+-..--.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34445 777888887777653 2234555667778888888888888887764421111111222234455555555555
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChhH
Q 046719 713 KELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFE--NGFIPSFCIYNELTNGLKQEGKLKE 781 (808)
Q Consensus 713 ~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~g~~~~ 781 (808)
..+-.++-. .| |...-..+...+...|+.++|.+.+-.+++ .|.. |...-..|+..+.-.|..+.
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCH
Confidence 555555443 34 566667777788888888888877777665 3555 66667777777766664333
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.36 Score=46.72 Aligned_cols=156 Identities=8% Similarity=-0.048 Sum_probs=116.5
Q ss_pred HHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCH
Q 046719 635 IREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM----TYNSLIFGHLREGKL 709 (808)
Q Consensus 635 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~----~~~~l~~~~~~~g~~ 709 (808)
...| ..+|...++++++. .+.|...++-.-++|.-.|+.+.-...+++++-. ..||.. ....+..++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3445 77888888888875 4778888888889999999999999999998875 456653 233556677889999
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCChhHHHH
Q 046719 710 SEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI----PSFCIYNELTNGLKQEGKLKEAQI 784 (808)
Q Consensus 710 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~l~~~g~~~~A~~ 784 (808)
++|.+..++..+ +.+ |...-..+...+.-.|++.++.++..+-... -+ .-...|-..+-.+.+.+.++.|+.
T Consensus 192 ~dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 192 DDAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred hhHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 999999999887 444 5666678888888899999999988775421 11 012233355667788899999999
Q ss_pred HHHHHHHcCCC
Q 046719 785 LCSEISIVGKD 795 (808)
Q Consensus 785 ~~~~~~~~~~~ 795 (808)
+|+.-+-+..+
T Consensus 269 IyD~ei~k~l~ 279 (491)
T KOG2610|consen 269 IYDREIWKRLE 279 (491)
T ss_pred HHHHHHHHHhh
Confidence 99876654433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.69 Score=49.62 Aligned_cols=115 Identities=15% Similarity=0.160 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHHCC--CC-CCHHHHHHHHHHHHhcCCHhHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNA-LIHCYAEHGDVQKALVLHSEMVDQG--IR-PDKMTYNSLIFGHLREGKLSEVKE 714 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~g--~~-pd~~~~~~l~~~~~~~g~~~~A~~ 714 (808)
.+.+.+++..+.+. -|+...|.. -.+.+...|++++|++.|++..+.. .+ .....+.-+++.+.-.++|++|.+
T Consensus 249 ~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 249 LEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 78888888888875 466655543 3566778899999999999876421 11 123456688899999999999999
Q ss_pred HHHHHHHCCCCCCHHHHH-HHHHHHHccCCh-------hHHHHHHHHHHH
Q 046719 715 LVNDMKVKGLIPKADTYN-ILVKGYCNLKDF-------GGAYIWYREMFE 756 (808)
Q Consensus 715 ~~~~~~~~g~~p~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~~~~ 756 (808)
.+..+.+.. .-...+|. ..+.++...|+. ++|.+++.++-.
T Consensus 327 ~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 327 YFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999998742 12233333 445555678888 888888887754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.89 Score=40.72 Aligned_cols=90 Identities=16% Similarity=0.069 Sum_probs=47.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 046719 665 IHCYAEHGDVQKALVLHSEMVDQGIRPDKM----TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCN 740 (808)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 740 (808)
...+..+|++++|...++..+.. +.|.. +-..|.....+.|.+++|...++...+.+. .......-++++..
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 34455666666666666655542 11211 122445556666666666666655444222 12223445566666
Q ss_pred cCChhHHHHHHHHHHHCC
Q 046719 741 LKDFGGAYIWYREMFENG 758 (808)
Q Consensus 741 ~g~~~~A~~~~~~~~~~~ 758 (808)
.|+-++|+.-|+++++.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 666666666666666554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.37 E-value=2.2 Score=41.12 Aligned_cols=122 Identities=11% Similarity=-0.022 Sum_probs=52.6
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHH
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAY 748 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 748 (808)
...|++.+|...|+..... .+-+...-..++.+|...|+.+.|..++..+....-.........-+..+.+..+..+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~-~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQA-APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHh-CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 4445555555555555543 111222334455555555555555555555332111111111112233333344444333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 749 IWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
.+-+++- .+|. |...-..|+..|...|+.++|...+-.++.++
T Consensus 224 ~l~~~~a-adPd-d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 224 DLQRRLA-ADPD-DVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3333322 2222 45555555555555555555555555555443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.35 E-value=1.7 Score=44.99 Aligned_cols=148 Identities=16% Similarity=0.142 Sum_probs=84.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 046719 524 MLIDGSCTMGRIKDAFKFFDEMVKREMGPTL-VTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSL 602 (808)
Q Consensus 524 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 602 (808)
.+|.-.-+..+.+.-++.-++.++. .|+. ..|..|. --......++.+++++.++.|-. .+ .+.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~----~l-------g~s 237 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLA--EEEASTIVEAEELLRQAVKAGEA----SL-------GKS 237 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHHH----hh-------chh
Confidence 4444455666777777777777764 3433 2232221 22344578888888888764310 00 110
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHH
Q 046719 603 GSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVP-DLLVYNALIHCYAEHGDVQKALVL 680 (808)
Q Consensus 603 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 680 (808)
...+..-..++........|-..+-..+...+.+.| .++|.+.++++.+..... ...+...|+.++...+.+.++..+
T Consensus 238 ~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 238 QFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 001111112222222222222333334555566778 999999999998753222 334677889999999999999999
Q ss_pred HHHHHH
Q 046719 681 HSEMVD 686 (808)
Q Consensus 681 ~~~~~~ 686 (808)
+.+--+
T Consensus 318 L~kYdD 323 (539)
T PF04184_consen 318 LAKYDD 323 (539)
T ss_pred HHHhcc
Confidence 998754
|
The molecular function of this protein is uncertain. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.048 Score=33.45 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 764 CIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 764 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
..+..++.++...|++++|+..+++++...|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555666666666666666666666665554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.24 E-value=2.3 Score=38.71 Aligned_cols=179 Identities=15% Similarity=0.123 Sum_probs=100.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHH
Q 046719 114 LPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFD 193 (808)
Q Consensus 114 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 193 (808)
....|+-=|.+..... |.-+.+||.|.--+...|+++.|.+.|+...+.++.-+-...|.-|. +.--|++..|.+-|.
T Consensus 80 L~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~ 157 (297)
T COG4785 80 LRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLL 157 (297)
T ss_pred HHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHH
Confidence 3344444444444432 23467899999999999999999999999998766633333343333 446789999988777
Q ss_pred HhhhCCC-CCChhhHHHHHHHHHccCCHhHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 046719 194 GMEKSRT-RPNVFVYNVLISGFCKEKKIRDAEKLF-DEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVE 271 (808)
Q Consensus 194 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 271 (808)
+.-+.++ .|-...|--+.. +.-+..+|..-+ ++..+. |..-|...|-.|.- |... ...++++++.....
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~ 228 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERLKADATD 228 (297)
T ss_pred HHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccc
Confidence 7766543 233334433332 334566666544 333332 66666666555432 2221 12233443332110
Q ss_pred ------cCHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 272 ------VSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAH 303 (808)
Q Consensus 272 ------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 303 (808)
.-..||--+.+-+...|+.++|..+|+-.+..
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 01124555555566666666666666655543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.88 Score=44.16 Aligned_cols=152 Identities=17% Similarity=0.125 Sum_probs=99.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHH----HHHHHHcC-
Q 046719 564 LCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPL----LSGCIREG- 638 (808)
Q Consensus 564 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~~- 638 (808)
+...|+..+|...++++++. .+.|..++.--=++|.-.|+.+.-...++++... ..++...|..+ ..++...|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 44577888888888888765 3557777777777888888888777777777753 34554444332 23345667
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHhHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP----DKMTYNSLIFGHLREGKLSEVKE 714 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p----d~~~~~~l~~~~~~~g~~~~A~~ 714 (808)
+++|++.-++..+.+ +.|.....++.+.+-..|+..++.++..+-... .+- -...|...+-.+...+.++.|.+
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 888888888777754 456666667777777788888888776554331 111 11234455555666677888888
Q ss_pred HHHHH
Q 046719 715 LVNDM 719 (808)
Q Consensus 715 ~~~~~ 719 (808)
+|+.-
T Consensus 269 IyD~e 273 (491)
T KOG2610|consen 269 IYDRE 273 (491)
T ss_pred HHHHH
Confidence 87763
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.19 E-value=5.3 Score=42.56 Aligned_cols=183 Identities=15% Similarity=0.139 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHH
Q 046719 448 NVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLID 527 (808)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 527 (808)
+..+|...++.-.+.|+++...-+|++..-. +..-...|-..+......|+.+-|..++....+-.++ +......+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHH
Confidence 4567888888888888888888888887532 2223445555555555667777777666655554333 2222222222
Q ss_pred HHH-hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHH---HHHHHHHhCCCCCCH--HHHHHHHH-HH
Q 046719 528 GSC-TMGRIKDAFKFFDEMVKREMGPT-LVTFNALINGLCKKGRVMEAE---DMLPQITSSGLNPDV--ITYNSLIS-GY 599 (808)
Q Consensus 528 ~~~-~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~--~~~~~l~~-~~ 599 (808)
.+. ..|+++.|..+++.+.+.- |+ ...-..-+....+.|+.+.+. .++.........+.. ..+...+. .+
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 222 3568888888888877752 33 223333344556677777666 333333221111111 11111111 12
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 046719 600 SSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCI 635 (808)
Q Consensus 600 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 635 (808)
.-.++.+.|..++.++.+. .+++...|..++..+.
T Consensus 452 ~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred HHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 2355666666666666653 4444555555554433
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.11 E-value=1.1 Score=40.15 Aligned_cols=134 Identities=11% Similarity=0.028 Sum_probs=88.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HH--HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TY--NSLIFGHLREGKLSEVKELVNDMKVKGLIPK--ADTYNIL 734 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l 734 (808)
.|..++.... .+.. +.....+++.... .-+.. .+ ..+...+...|++++|...++..+......+ ..+-..|
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n-~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRL 132 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQAN-GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRL 132 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhc-cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 3444444433 3333 5555556665531 11222 22 2456778899999999999998875322222 2333467
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 735 VKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 735 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.......|++++|+.+++...+.++. ......-+++|...|+.++|+..|++.++..++...
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 88889999999999999987654433 223445688999999999999999999998744433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.044 Score=36.18 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 764 CIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 764 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
..+..++..|.+.|++++|.++++++++..|++..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 56788999999999999999999999999999876
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.88 E-value=1.1 Score=44.09 Aligned_cols=130 Identities=12% Similarity=-0.062 Sum_probs=94.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCC-CC-----
Q 046719 661 YNALIHCYAEHGDVQKALVLHSEMVDQGIRP-D----KMTYNSLIFGHLREGKLSEVKELVNDMKVK--GLI-PK----- 727 (808)
Q Consensus 661 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~-p~----- 727 (808)
..++..++...+.++++++.|+.+.+.--.. | ..++..|...+.+..++++|..+..++.+. .+. .|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3456777777889999999999987631111 2 236889999999999999999888886541 111 11
Q ss_pred -HHHHHHHHHHHHccCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046719 728 -ADTYNILVKGYCNLKDFGGAYIWYREMFEN----GFIP-SFCIYNELTNGLKQEGKLKEAQILCSEIS 790 (808)
Q Consensus 728 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 790 (808)
......+.-++...|...+|.+.-+++.+. |-.+ .......++..|...|+.+.|..-|+.+-
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 233457778889999999999998887653 3322 23455678899999999999988887764
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.80 E-value=3.5 Score=38.43 Aligned_cols=43 Identities=12% Similarity=0.197 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046719 396 NRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRM 440 (808)
Q Consensus 396 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 440 (808)
+.|..+.+++.+. +--+..|+-....|..+|..+.|-..+++.
T Consensus 75 EqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 75 EQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 4444444444432 112233455555666666666665555544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.67 E-value=3.8 Score=38.22 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=23.3
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCC-C--CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 046719 734 LVKGYCNLKDFGGAYIWYREMFENG-F--IPSFCIYNELTNGLKQEGKLKEAQILC 786 (808)
Q Consensus 734 l~~~~~~~g~~~~A~~~~~~~~~~~-~--~~~~~~~~~l~~~l~~~g~~~~A~~~~ 786 (808)
.+-.+....|+..|.+.+++.-+.+ + ..+..+...|+.+| ..|+.+++.+++
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3334444555555555555533211 1 11334444444444 345555555544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.66 E-value=8.8 Score=42.44 Aligned_cols=78 Identities=21% Similarity=0.065 Sum_probs=40.3
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCChh
Q 046719 709 LSEVKELVNDMKVKGLIPKADTYNILVKGYCNL----KDFGGAYIWYREMFENGFIPSFCIYNELTNGLK----QEGKLK 780 (808)
Q Consensus 709 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~g~~~ 780 (808)
.+.+...+.+....| +......+.++|..- .+++.|...|..+...+ ......++.++- -.+ +.
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~ 526 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LH 526 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hH
Confidence 445555555554433 344444555555432 24666666666666554 444444544432 122 56
Q ss_pred HHHHHHHHHHHcCC
Q 046719 781 EAQILCSEISIVGK 794 (808)
Q Consensus 781 ~A~~~~~~~~~~~~ 794 (808)
.|.++++++...+.
T Consensus 527 ~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 527 LAKRYYDQASEEDS 540 (552)
T ss_pred HHHHHHHHHHhcCc
Confidence 67777766665443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.071 Score=32.70 Aligned_cols=30 Identities=23% Similarity=0.181 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 046719 765 IYNELTNGLKQEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 765 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 794 (808)
.|..++.++...|++++|+..++++++..|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 344455555555555555555555555444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.69 Score=41.35 Aligned_cols=94 Identities=11% Similarity=-0.002 Sum_probs=58.5
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046719 702 GHLREGKLSEVKELVNDMKVKGLIPK-----ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQE 776 (808)
Q Consensus 702 ~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 776 (808)
-++..|++++|..-|..+++. +++. ...|..-+.++.+.+.++.|++-..++++.+|. ...++.+-+.+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 345566777777777666653 2221 234555566666777777777777777766655 445555566667777
Q ss_pred CChhHHHHHHHHHHHcCCCCC
Q 046719 777 GKLKEAQILCSEISIVGKDAW 797 (808)
Q Consensus 777 g~~~~A~~~~~~~~~~~~~~~ 797 (808)
.++++|+.-|++++...|..-
T Consensus 182 ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchH
Confidence 777777777777776665543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.56 Score=39.53 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 046719 411 APNCITFNTLIDKFCELGEMDKAEEWVKRMLEK-GVSPNVKTNNTLID 457 (808)
Q Consensus 411 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~ 457 (808)
.|+..+..+++.+|+.+|++..|.++++...+. +++.+..+|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344445555555555555555555555544432 34444444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.41 E-value=4.7 Score=38.23 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 046719 381 MFNTIVSGYCRTGDLNRAMLAIQQMENHGLA--PNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDG 458 (808)
Q Consensus 381 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (808)
.|+.-+ .-.+.|++++|.+.|+.+....+- -...+...++-++.+.++++.|+..+++....-......-|...|.+
T Consensus 37 LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 37 LYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 344333 345778888888888888765322 12344555666777888888888888887765322223334444444
Q ss_pred HH
Q 046719 459 YG 460 (808)
Q Consensus 459 ~~ 460 (808)
.+
T Consensus 116 Ls 117 (254)
T COG4105 116 LS 117 (254)
T ss_pred HH
Confidence 43
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.39 E-value=1.7 Score=37.88 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=68.0
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHH
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRPDKMT-YNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~pd~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 747 (808)
.+.++.+++..++..+.- ++|.... -..-++.+...|++.+|..+++.+.+. .|....-..|...|....+-.+-
T Consensus 21 l~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCChHH
Confidence 466789999999998887 6776653 334567788899999999999997763 34333333444344343333444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 046719 748 YIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQI 784 (808)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~ 784 (808)
..+-+++++.+..|+... |+..+........|..
T Consensus 97 r~~A~evle~~~d~~a~~---Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 97 RRYADEVLESGADPDARA---LVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHhcCCChHHHH---HHHHHHHhccccchhh
Confidence 555666777665554443 4555555555444444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.38 E-value=2.9 Score=36.28 Aligned_cols=11 Identities=18% Similarity=0.253 Sum_probs=4.4
Q ss_pred CCHhHHHHHHH
Q 046719 707 GKLSEVKELVN 717 (808)
Q Consensus 707 g~~~~A~~~~~ 717 (808)
++.+.|++++.
T Consensus 110 ~d~~~a~~~~~ 120 (140)
T smart00299 110 GNYEKAIEYFV 120 (140)
T ss_pred cCHHHHHHHHH
Confidence 33444444333
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.35 E-value=9.4 Score=44.24 Aligned_cols=78 Identities=21% Similarity=0.283 Sum_probs=38.4
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 046719 666 HCYAEHGDVQKALVLHSEMVDQGIRPDKM--TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKD 743 (808)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~~~~~g~~pd~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 743 (808)
.+|..+|+|.+|+.+..++.. .-|.. +-..|+.-+..+++.-+|.++..+... .| .-.+..||+...
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d~-----~~av~ll~ka~~ 1041 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS---DP-----EEAVALLCKAKE 1041 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---CH-----HHHHHHHhhHhH
Confidence 344555555555555554432 11222 124555666666666666666555432 11 122344555566
Q ss_pred hhHHHHHHHHH
Q 046719 744 FGGAYIWYREM 754 (808)
Q Consensus 744 ~~~A~~~~~~~ 754 (808)
|++|+......
T Consensus 1042 ~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1042 WEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHhc
Confidence 66666655443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.44 Score=40.16 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCcCHHHHHHHHH
Q 046719 235 LVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRD-KVEVSLVMFNSLLG 282 (808)
Q Consensus 235 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~ 282 (808)
..|+..+..+++.+|+..|++..|..+.+...+. +++.+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3455555555555555555555555555555433 34444445555444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.23 E-value=6.5 Score=39.13 Aligned_cols=138 Identities=16% Similarity=0.210 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--C----CCHHHHHHHHHHHHHCCC---CcCHHhHHHHHHHHHHcC---
Q 046719 571 MEAEDMLPQITSSGLNPDVITYNSLISGYSS--L----GSSQKCLELYENMKKLGI---KPSLRTYHPLLSGCIREG--- 638 (808)
Q Consensus 571 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~~--- 638 (808)
++...+++.+.+.|+.-+..+|.+....... . ....+|..+|+.|++.-. .++...+..++..-...-
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l 158 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEEL 158 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHH
Confidence 3445566666666666666555442222221 1 234567777777776521 233444444444311111
Q ss_pred HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 639 IVAVEKLFNEMLQINLVPDLL--VYNALIHCYAEHGD--VQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGK 708 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~ 708 (808)
.+.++..|+.+.+.|+..... ....++..+..... ...+.++++.+.+.|+++....|..++-...-.+.
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~ 232 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDP 232 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCc
Confidence 456667777777766554322 22222222111111 34667777777777777766666555544433333
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.15 E-value=11 Score=41.33 Aligned_cols=253 Identities=17% Similarity=0.141 Sum_probs=121.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcCCC
Q 046719 530 CTMGRIKDAFKFFDEMVKREMGPTLVTF----NALINGLCKKGRVMEAEDMLPQITSSGLNPDVITY-NSLISGYSSLGS 604 (808)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~ 604 (808)
...|+..+|.+++.-.+...-.+ ...| ..+.-++...|..+...+++.+.++..-. ++..+ .+|.-++...|.
T Consensus 368 IH~G~~~~~~~ll~pYLP~~~~~-~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~-e~v~hG~cLGlGLa~mGS 445 (929)
T KOG2062|consen 368 IHRGHENQAMKLLAPYLPKEAGE-GSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAEN-EVVRHGACLGLGLAGMGS 445 (929)
T ss_pred eeccccchHHHHhhhhCCccCCC-CCCccccchhhhhhccccCcCccHHHHHHHHHHhccc-hhhhhhhhhhccchhccc
Confidence 45677777887776665441111 1111 11222344455555566766666554322 23333 333334444443
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHH--HHHHHcC--HHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 046719 605 SQKCLELYENMKKLGIKPSLRTYHPLL--SGCIREG--IVAVEK-LFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALV 679 (808)
Q Consensus 605 ~~~A~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~~--~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 679 (808)
.+ .++|+++++.-...+..+-.... -++...| ..+|.+ ++.-..+.... .+.---.+.-++..-|+-++|..
T Consensus 446 a~--~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHe-ki~RGl~vGiaL~~ygrqe~Ad~ 522 (929)
T KOG2062|consen 446 AN--EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHE-KIIRGLAVGIALVVYGRQEDADP 522 (929)
T ss_pred cc--HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHH-HHHHHHHHhHHHHHhhhhhhhHH
Confidence 32 35566555432233333322221 2233334 233322 22222111000 00001122334556678888888
Q ss_pred HHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 680 LHSEMVDQGIRPDKM--TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 680 ~~~~~~~~g~~pd~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
+.++|.... .|-.. -..+++.+|+-.|+..-..+++.-.+.. ...|..-....+-++.-..+.+....+.+-+.+
T Consensus 523 lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~~~~s~V~lLse- 599 (929)
T KOG2062|consen 523 LIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSE- 599 (929)
T ss_pred HHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChhhchHHHHHHhh-
Confidence 888887642 22111 1235667788888766666666655432 222333333444445556666666666655444
Q ss_pred CCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046719 758 GFIPSF--CIYNELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 758 ~~~~~~--~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
.+.|.. .+-..|+-+|.-.|. .+|+.+++-|.+
T Consensus 600 s~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 600 SYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 233333 333345555666665 678888877766
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.12 E-value=8.3 Score=39.97 Aligned_cols=118 Identities=11% Similarity=0.007 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-------
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP---DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP------- 726 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p------- 726 (808)
...+|..++..+.+.|+++.|...+.++...+... +......-+..+...|+..+|+..++...+..+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34567777888888888888888888887643111 22234455677777888888888887766511111
Q ss_pred -------------------C-------HHHHHHHHHHHHcc------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 727 -------------------K-------ADTYNILVKGYCNL------KDFGGAYIWYREMFENGFIPSFCIYNELTNGLK 774 (808)
Q Consensus 727 -------------------~-------~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 774 (808)
+ ...+..++.-+... ++.+++.+.|+++.+..+. ....|..++..+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS-WEKAWHSWALFND 303 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh-HHHHHHHHHHHHH
Confidence 0 12233334334444 7788889999999887655 5667776665544
Q ss_pred h
Q 046719 775 Q 775 (808)
Q Consensus 775 ~ 775 (808)
+
T Consensus 304 ~ 304 (352)
T PF02259_consen 304 K 304 (352)
T ss_pred H
Confidence 3
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.96 Score=47.78 Aligned_cols=131 Identities=19% Similarity=0.228 Sum_probs=82.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 046719 311 TYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYC 390 (808)
Q Consensus 311 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 390 (808)
..+.++.-+.+.|-.+.|+++...-.. -.+...+.|+++.|.++..+. .+...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 355666666666777777665543221 344456778888877764332 36668888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 046719 391 RTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQ 470 (808)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 470 (808)
+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+....+|- ++....++.-.|+.+++.+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 88888888888877543 45566667778888777777776665542 3444445555677777777
Q ss_pred HHHH
Q 046719 471 ILEE 474 (808)
Q Consensus 471 ~~~~ 474 (808)
++.+
T Consensus 424 lL~~ 427 (443)
T PF04053_consen 424 LLIE 427 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.00 E-value=3.6 Score=36.07 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=49.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHh-hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHH-H--HHHHHccCCHh
Q 046719 146 RCNQYDRALDLFDEIVCMGFRPDKF-TYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNV-L--ISGFCKEKKIR 221 (808)
Q Consensus 146 ~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l--~~~~~~~g~~~ 221 (808)
+.+..++|+.-|..+.+.|...-+. ....+.....+.|+...|...|+++-.....|-..-=.. | .-.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3344444444444444444332111 112222234445555555555555444332222220000 0 11123445555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046719 222 DAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKR 267 (808)
Q Consensus 222 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 267 (808)
+.....+-+...+-+.-...-..|.-+-.+.|++.+|...|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5554444444333222233334444444455555555555555544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.00 E-value=12 Score=41.18 Aligned_cols=87 Identities=9% Similarity=0.006 Sum_probs=38.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 046719 315 LFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGK--VEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRT 392 (808)
Q Consensus 315 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 392 (808)
+++-+...+.+..|.++-+-+...-... ..++.....-+.+..+ -+++.+...+-+..-. .+..+|..+.+-....
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQE 520 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhc
Confidence 3444555556666666555543322111 3344444444443321 1112222221111111 2344566666655666
Q ss_pred CCHHHHHHHHH
Q 046719 393 GDLNRAMLAIQ 403 (808)
Q Consensus 393 g~~~~A~~~~~ 403 (808)
|+++-|..+++
T Consensus 521 GR~~LA~kLle 531 (829)
T KOG2280|consen 521 GRFELARKLLE 531 (829)
T ss_pred CcHHHHHHHHh
Confidence 77666666554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.99 E-value=3 Score=36.26 Aligned_cols=42 Identities=19% Similarity=0.125 Sum_probs=19.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHc
Q 046719 174 KAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCK 216 (808)
Q Consensus 174 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (808)
.++..+.+.+.+.....+++.+.+.+. .+....|.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444444455555554444432 344444555555543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.95 E-value=7.2 Score=38.68 Aligned_cols=162 Identities=8% Similarity=-0.049 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHcC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 626 TYHPLLSGCIREG----IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIF 701 (808)
Q Consensus 626 ~~~~l~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~ 701 (808)
++..++.++...+ .+.+.++++.+.... +..+.++-.-+..+.+.++.+++.+.+.+|+.. +.-....+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 4555666666655 455666666665432 222444545556666688888899999888875 2212223333333
Q ss_pred HH---HhcCCHhHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHccCC------hhHHHHHHHHHHH-CCCCCCHHHH
Q 046719 702 GH---LREGKLSEVKELVNDMKVKGLIPKADTYN-----ILVKGYCNLKD------FGGAYIWYREMFE-NGFIPSFCIY 766 (808)
Q Consensus 702 ~~---~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-----~l~~~~~~~g~------~~~A~~~~~~~~~-~~~~~~~~~~ 766 (808)
.+ ... ....|...+..++...+.|....|. ..+......++ .+....+++...+ .+.+.+..+.
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 33 333 2355666666655433455432111 11111222222 3334444443222 2222233333
Q ss_pred HHH-------HHHHHhcCChhHHHHHHHHHH
Q 046719 767 NEL-------TNGLKQEGKLKEAQILCSEIS 790 (808)
Q Consensus 767 ~~l-------~~~l~~~g~~~~A~~~~~~~~ 790 (808)
..+ +..+++.+++.+|..+|+-.+
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 222 334677889999999998655
|
It is also involved in sporulation []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.73 E-value=12 Score=43.41 Aligned_cols=135 Identities=13% Similarity=0.221 Sum_probs=71.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHH
Q 046719 455 LIDGYGRMGHFDKCFQILEEMENSGMKPNVV----SYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSC 530 (808)
Q Consensus 455 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 530 (808)
.++.--+.|.+++|+.++ .|+.. .|.+..+.+.....+++|.-.|+..-+. .--+.+|.
T Consensus 914 ~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~ 976 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYK 976 (1265)
T ss_pred HHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHH
Confidence 333334455555555444 23433 3344444455566666666666554221 23355667
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 046719 531 TMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLE 610 (808)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 610 (808)
.+|+|.+|+.+..++.... .--..+-..|+.-+...+++-+|-++..+.... | .-.+..|++...+++|+.
T Consensus 977 ~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlr 1047 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALR 1047 (1265)
T ss_pred HhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHH
Confidence 7777777777776654320 001112245666677777777777777666542 1 123344556666777766
Q ss_pred HHHHH
Q 046719 611 LYENM 615 (808)
Q Consensus 611 ~~~~~ 615 (808)
+....
T Consensus 1048 va~~~ 1052 (1265)
T KOG1920|consen 1048 VASKA 1052 (1265)
T ss_pred HHHhc
Confidence 65443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.72 E-value=9 Score=39.69 Aligned_cols=104 Identities=11% Similarity=-0.030 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC------
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP---KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPS------ 762 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------ 762 (808)
...+|..++..+.+.|.++.|...+.++.+.+... .+......+..+...|+..+|+..+++.++..+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34488999999999999999999999987643211 345555667778889999999999988887211111
Q ss_pred ---------------------------HHHHHHHHHHHHhc------CChhHHHHHHHHHHHcCCC
Q 046719 763 ---------------------------FCIYNELTNGLKQE------GKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 763 ---------------------------~~~~~~l~~~l~~~------g~~~~A~~~~~~~~~~~~~ 795 (808)
..++..++.-.... +..+++.+.+.++.+..++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence 12333444444444 7778888888888877654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.68 E-value=4.6 Score=35.47 Aligned_cols=124 Identities=15% Similarity=0.060 Sum_probs=53.9
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHH---HHHHHHhcCC
Q 046719 109 LSSAKLPSEALQLYASTKADGTRLSLD-SINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGK---AVQAAVKIGD 184 (808)
Q Consensus 109 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~ 184 (808)
+...++.++|+.-|..+.+.|...-+. ..--+.......|+...|...|+++-.-...|-+.-=.. ..-.++..|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 344455555555555555544322111 111223334445555555555555544333332221111 1112344555
Q ss_pred hHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHh
Q 046719 185 LKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQ 232 (808)
Q Consensus 185 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 232 (808)
++....-.+.+...+-+--...-..|.-+-.+.|++..|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 555554444444333222222333444444455555555555555544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.15 Score=31.20 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
.+|..++.++...|++++|+..++++++..|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4566777777777777777777777776643
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.58 E-value=3.7 Score=34.16 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=8.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 698 SLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
.++.+|.+.|+..++-+++.++.+
T Consensus 125 kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 125 KIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhhHHHHHHHHHH
Confidence 333333333333333333333333
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.94 Score=37.72 Aligned_cols=74 Identities=5% Similarity=-0.074 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHccCC---hhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 725 IPKADTYNILVKGYCNLKD---FGGAYIWYREMFE-NGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 725 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.+...+-..+.+++.+..+ ..+.+.++++..+ ..+.......+.|+-++++.+++++++++++..++..|++-.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 4455555666667766544 4455667777765 333434566666777777777777777777777777776665
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.63 Score=43.96 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=56.6
Q ss_pred CHhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 046719 378 DEVMFNTIVSGYCR-----TGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTN 452 (808)
Q Consensus 378 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 452 (808)
|-.+|.+.+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+.. +.|. ..+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-nvf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-NVF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-HHH
Confidence 55556665555543 2455555556666666666666666666665543311 1111 111
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 046719 453 NTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCK 499 (808)
Q Consensus 453 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 499 (808)
....-.|-+ +-+-+++++++|...|+.||..+-..+++++.+.+-
T Consensus 129 Q~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111112222 234567777777777777777777777777766655
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.16 Score=31.64 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=14.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHH
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMF 755 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~ 755 (808)
|..|+.+|.+.|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666644
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.19 Score=30.74 Aligned_cols=31 Identities=16% Similarity=0.352 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
..|..++.++...|++++|++.++++++..|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3566777777777888888888877776644
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.26 E-value=2.4 Score=44.84 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
+...|..|.+...+.|+++-|.+.|++..+ +..|.-.|.-.|+.+.-.++.+.+..
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555555555555555555554422 33444445555555444444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.75 Score=43.49 Aligned_cols=33 Identities=27% Similarity=0.254 Sum_probs=19.4
Q ss_pred CChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 046719 253 GEFEKVSALRERMKRDKVEVSLVMFNSLLGGFC 285 (808)
Q Consensus 253 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 285 (808)
+.++-....++.|.+-|+..|..+|+.|+..+-
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfP 118 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFP 118 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCc
Confidence 444445555566666666666666666666553
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.16 Score=30.77 Aligned_cols=31 Identities=16% Similarity=0.040 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 765 IYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 765 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
++..++.++.+.|++++|...++++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3456677777777777777777777776665
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.18 E-value=8 Score=36.74 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=34.1
Q ss_pred HhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046719 530 CTMGRIKDAFKFFDEMVKRE--MGPTLVTFNALINGLCKKGRVMEAEDMLPQITSS 583 (808)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 583 (808)
.+.|++++|.+.|+.+.... -+-...+...++-++.+.+++++|+..+++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 45677777777777776541 1122444555566667777777777777777653
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.11 E-value=2.1 Score=38.90 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=27.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM--TYNSLIFGHLREGKLSEVKELVNDM 719 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~--~~~~l~~~~~~~g~~~~A~~~~~~~ 719 (808)
.+..+++.|.+.|+.++|++.|.++.+....+... .+-.++......+++..+..++.++
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444555555555555555555554443333221 3334444444455555555444444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.07 E-value=1.4 Score=40.08 Aligned_cols=62 Identities=11% Similarity=0.031 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA--DTYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
.+..++..|.+.|+.++|.+.+.++.+....+.. ..+..++......|++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555666666666666666666666554433332 3344555555566666666666555543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.00 E-value=11 Score=37.83 Aligned_cols=150 Identities=19% Similarity=0.120 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAE----HGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREG------- 707 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g------- 707 (808)
..+|.++|....+.|. ......|...|.. ..+..+|...|+++.+.|..+...+...+...+...+
T Consensus 93 ~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~ 169 (292)
T COG0790 93 KTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY 169 (292)
T ss_pred HHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence 4556666665555442 1222234444433 3377888888888888775443233445555555431
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------
Q 046719 708 KLSEVKELVNDMKVKGLIPKADTYNILVKGYCN----LKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG------ 777 (808)
Q Consensus 708 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g------ 777 (808)
+...|...+.++...+ +......++..|.. ..++++|..+|+++-+.|. ......+. .+...|
T Consensus 170 ~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~ 242 (292)
T COG0790 170 DDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKA 242 (292)
T ss_pred HHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhh
Confidence 2347888888887765 44555556655543 3378899999999888765 45555555 566555
Q ss_pred ---------ChhHHHHHHHHHHHcCCCCCc
Q 046719 778 ---------KLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 778 ---------~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+...|..++......+.....
T Consensus 243 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 272 (292)
T COG0790 243 AFLTAAKEEDKKQALEWLQKACELGFDNAC 272 (292)
T ss_pred hhcccccCCCHHHHHHHHHHHHHcCChhHH
Confidence 788888888888888777665
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.94 E-value=10 Score=37.45 Aligned_cols=123 Identities=13% Similarity=0.068 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREG-KLSEVKELVNDMKVKGLIPKADTYNILVKG 737 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 737 (808)
.+-...+.++++.|+ ++|+..+-.+.+ .+|...-...+.++...+ ....+...+..++. .+|..+-...+.+
T Consensus 143 ~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~a 215 (280)
T PRK09687 143 NVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIG 215 (280)
T ss_pred HHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHH
Confidence 333344444444444 344454444444 223333333333333332 12344444444442 3344444445555
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 738 YCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
+.+.|+ ..|+..+-+.++.+ + .....+.++.+.|.. +|...+.++.+..++
T Consensus 216 Lg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d 266 (280)
T PRK09687 216 LALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDD 266 (280)
T ss_pred HHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCC
Confidence 555555 34555555544331 1 223455555555553 455555555554443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.63 E-value=4.2 Score=35.56 Aligned_cols=103 Identities=18% Similarity=0.043 Sum_probs=69.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046719 698 SLIFGHLREGKLSEVKELVNDMKVKGLIPKADT-YNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQE 776 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 776 (808)
.+++.-.+.++.+++..++.-+.- +.|.... -..-+..+...|+|.+|..+++++.+..+. .+..-..++.||...
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~-~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPG-FPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHHc
Confidence 344455677899999999999887 6776433 334566778899999999999998876554 555555667777776
Q ss_pred CChhHHHHHHHHHHHcCCCCCchhhhHh
Q 046719 777 GKLKEAQILCSEISIVGKDAWTNEDQSA 804 (808)
Q Consensus 777 g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 804 (808)
|+ .+=..+.++++..+++.-.....++
T Consensus 92 ~D-~~Wr~~A~evle~~~d~~a~~Lv~~ 118 (160)
T PF09613_consen 92 GD-PSWRRYADEVLESGADPDARALVRA 118 (160)
T ss_pred CC-hHHHHHHHHHHhcCCChHHHHHHHH
Confidence 65 3344455666666654444333333
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.55 E-value=5.5 Score=33.24 Aligned_cols=63 Identities=16% Similarity=0.069 Sum_probs=33.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 794 (808)
....+..+..+|+-+.-.+++.+..+ +-++++..+..++.+|.+-|+..+|-.++.++-++|.
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33445555566666666666666554 2244666666666666666666666666666666554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.13 Score=31.51 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHccCChhHH
Q 046719 728 ADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 728 ~~~~~~l~~~~~~~g~~~~A 747 (808)
...|..++..|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 44455555555555555544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.43 E-value=5 Score=34.44 Aligned_cols=91 Identities=10% Similarity=0.012 Sum_probs=55.4
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHH
Q 046719 670 EHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 670 ~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A 747 (808)
..++.+++..+++.|.- +.|+.. .-..-++.+...|++.+|..+++.+.+.+ +. +..-..+..++...||. .=
T Consensus 22 ~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~--~~~p~~kAL~A~CL~al~Dp-~W 96 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA--GAPPYGKALLALCLNAKGDA-EW 96 (153)
T ss_pred hcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC--CCchHHHHHHHHHHHhcCCh-HH
Confidence 47888888888888877 567654 33345677888889999999998887643 22 22222333344444443 23
Q ss_pred HHHHHHHHHCCCCCCHHH
Q 046719 748 YIWYREMFENGFIPSFCI 765 (808)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~ 765 (808)
..+-+++++.+.+|+...
T Consensus 97 r~~A~~~le~~~~~~a~~ 114 (153)
T TIGR02561 97 HVHADEVLARDADADAVA 114 (153)
T ss_pred HHHHHHHHHhCCCHhHHH
Confidence 334445555555545443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.37 E-value=4.9 Score=41.43 Aligned_cols=110 Identities=17% Similarity=0.051 Sum_probs=79.9
Q ss_pred HHHHccCCHHHHHHHHHHHHHC---C--CCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHH-------CCCCCCH--
Q 046719 666 HCYAEHGDVQKALVLHSEMVDQ---G--IRP---DKMTYNSLIFGHLREGKLSEVKELVNDMKV-------KGLIPKA-- 728 (808)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~~~~~---g--~~p---d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~g~~p~~-- 728 (808)
..+.-.|++..|.+++-..--. | +.| ....||.|+..+.+.|.+.-+..+|.++++ .|+.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 4566789999999987654311 2 122 223468999999999999988888888764 4555531
Q ss_pred --------HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046719 729 --------DTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQE 776 (808)
Q Consensus 729 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 776 (808)
......+-.|...|+.-.|.+.|.++...- ..++..|.+|++++...
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf-h~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF-HRNPRLWLRLAECCIMA 382 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHH
Confidence 223344667889999999999999998753 44899999999998654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.28 E-value=1.6 Score=42.32 Aligned_cols=77 Identities=16% Similarity=0.223 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHH-----CCCCCCHHHHH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKV-----KGLIPKADTYN 732 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~ 732 (808)
.++..++..+...|+.+.+.+.++++++. .| |...|..++.+|.+.|+...|+..|+++.+ .|+.|.+.+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 45677888888899999999999999984 44 777899999999999999999999988754 67888777766
Q ss_pred HHHHH
Q 046719 733 ILVKG 737 (808)
Q Consensus 733 ~l~~~ 737 (808)
.+...
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66555
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.17 E-value=22 Score=39.37 Aligned_cols=80 Identities=16% Similarity=0.028 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCCh
Q 046719 672 GDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLRE----GKLSEVKELVNDMKVKGLIPKADTYNILVKGYCN---LKDF 744 (808)
Q Consensus 672 g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~---~g~~ 744 (808)
.+.+.+...+.+....| +......|...|... .+++.|...+......+ ......++..+.. ..++
T Consensus 453 ~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~~ 525 (552)
T KOG1550|consen 453 STLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKVL 525 (552)
T ss_pred cchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcchh
Confidence 36677777777777655 555556666666544 34788888888877654 4444455555432 1126
Q ss_pred hHHHHHHHHHHHCC
Q 046719 745 GGAYIWYREMFENG 758 (808)
Q Consensus 745 ~~A~~~~~~~~~~~ 758 (808)
..|.++++.+.+.+
T Consensus 526 ~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 526 HLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHHhcC
Confidence 88888888887654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.27 Score=30.65 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046719 765 IYNELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 765 ~~~~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
++..|+..|.+.|++++|+.++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999553
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.73 E-value=15 Score=36.56 Aligned_cols=148 Identities=20% Similarity=0.198 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHH---cC----HHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCC-
Q 046719 605 SQKCLELYENMKKLGIKPSLRTYHPLLSGCIR---EG----IVAVEKLFNEMLQINL---VPDLLVYNALIHCYAEHGD- 673 (808)
Q Consensus 605 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~----~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~- 673 (808)
+++.+.+++.|.+.|+.-+..++......... .+ ...+.++|+.|.+... .++-..+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567788999998888887776664444333 11 5678899999998642 2333444444322 2233
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhH
Q 046719 674 ---VQKALVLHSEMVDQGIRPDKM--TYNSLIFGHLREGK--LSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGG 746 (808)
Q Consensus 674 ---~~~A~~~~~~~~~~g~~pd~~--~~~~l~~~~~~~g~--~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 746 (808)
.+++..+|+.+.+.|+..+.. ....++..+..... ...+.++++.+.+.|+.+....|..++-...-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 466778888888888876443 22233322222222 45788899999999988877777766554444444434
Q ss_pred HHHHHHHH
Q 046719 747 AYIWYREM 754 (808)
Q Consensus 747 A~~~~~~~ 754 (808)
....+.++
T Consensus 236 ~~~~i~ev 243 (297)
T PF13170_consen 236 IVEEIKEV 243 (297)
T ss_pred HHHHHHHH
Confidence 44444443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.33 Score=29.61 Aligned_cols=30 Identities=20% Similarity=0.151 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 046719 765 IYNELTNGLKQEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 765 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 794 (808)
+|..++..+...|++++|...+++.++..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344455555555555555555555554443
|
... |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=91.64 E-value=27 Score=39.28 Aligned_cols=145 Identities=8% Similarity=0.009 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 046719 416 TFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLC 495 (808)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 495 (808)
.|..... ..+.|++..+.++...+..... .....|..+.... .....++....+++-. +.+.....-...+..+.
T Consensus 36 ~f~~A~~-a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~La 110 (644)
T PRK11619 36 RYQQIKQ-AWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANP--TLPPARSLQSRFVNELA 110 (644)
T ss_pred HHHHHHH-HHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCC--CCchHHHHHHHHHHHHH
Confidence 3444333 3456788888777776643211 1222333332211 1224554444444422 12223333344455666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 046719 496 KDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVM 571 (808)
Q Consensus 496 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 571 (808)
+.+++.+....+ .. .+.+...-.....+....|+.++|......+-..|.. .+.....++..+.+.|.+.
T Consensus 111 ~~~~w~~~~~~~----~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 111 RREDWRGLLAFS----PE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HccCHHHHHHhc----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCC
Confidence 677777666522 11 2345555677778888889988887777776555433 4556677777777766543
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.46 Score=32.61 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 766 YNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 766 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
++.++-++.+.|++++|.++++.+++..|++-.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 445555666666666666666666666666555
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.32 E-value=16 Score=36.17 Aligned_cols=102 Identities=13% Similarity=0.080 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHH
Q 046719 450 KTNNTLIDGYGRMGHFD---KCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLI 526 (808)
Q Consensus 450 ~~~~~l~~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li 526 (808)
.++..++.+|...+..+ +|..+++.+... .+....++..-+..+.+.++.+++.+++..|...- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 34556666777666544 455555555433 22234455455666666777777777777777652 21223333333
Q ss_pred HHH---HhcCCHHHHHHHHHHHHHcCCCCCH
Q 046719 527 DGS---CTMGRIKDAFKFFDEMVKREMGPTL 554 (808)
Q Consensus 527 ~~~---~~~g~~~~A~~~~~~~~~~~~~~~~ 554 (808)
..+ .... ...|...++.++...+.|..
T Consensus 163 ~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEKS-PELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhhC-cHHHHHHHHHHHHHHhCCCh
Confidence 333 3322 34455555555544344433
|
It is also involved in sporulation []. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.00 E-value=17 Score=35.90 Aligned_cols=232 Identities=13% Similarity=0.024 Sum_probs=123.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHhCCCCCCHHHHH
Q 046719 518 NAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRV----MEAEDMLPQITSSGLNPDVITYN 593 (808)
Q Consensus 518 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~~ 593 (808)
|.......+.++...|.. ++......+... +|...-...+.++.+.|+. +++...+..+... .++...-.
T Consensus 36 d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 444444455555555542 222333333322 2444444555555555542 3455555555332 34444444
Q ss_pred HHHHHHHcCCCH-----HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 594 SLISGYSSLGSS-----QKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCY 668 (808)
Q Consensus 594 ~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 668 (808)
..+.++...+.. ..+...+..... .++..+-...+.++.+.+..++...+-.+++ .+|...-...+.++
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~---d~~~~VR~~A~~aL 183 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDEAAIPLLINLLK---DPNGDVRNWAAFAL 183 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCHHHHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 444444433221 223333333332 2355555556666666665566666666665 34444445555555
Q ss_pred HccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHH
Q 046719 669 AEHG-DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 669 ~~~g-~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 747 (808)
...+ ...++...+..+.. .+|..+-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|+. +|
T Consensus 184 g~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a 253 (280)
T PRK09687 184 NSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TL 253 (280)
T ss_pred hcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hH
Confidence 5543 24567777776664 4466666777888888777 56777766666543 2 234566777777774 68
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 748 YIWYREMFENGFIPSFCIYNELTNGL 773 (808)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~l~~~l 773 (808)
+..+.++.+.. ||..+.....+.+
T Consensus 254 ~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 254 LPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHHhhC--CChhHHHHHHHHH
Confidence 88888887643 3555554444444
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.83 E-value=30 Score=38.37 Aligned_cols=167 Identities=14% Similarity=0.175 Sum_probs=96.3
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhc
Q 046719 106 LSILSSAKLPSEALQLYASTKADGTRL---SLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKI 182 (808)
Q Consensus 106 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (808)
+.-+.+.+.+++|+..-...... .+ -...+...+..|.-.|++++|-.+...|.. -+...|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 34466778888888876554332 22 234677888999999999999999888865 3677788877777776
Q ss_pred CChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 046719 183 GDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALR 262 (808)
Q Consensus 183 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 262 (808)
|.... ++.-+.......+..+|..++..+.. ..-..+++...+. +++..+-...+++- .
T Consensus 437 ~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~----~~~~~F~e~i~~W--p~~Lys~l~iisa~--~---------- 495 (846)
T KOG2066|consen 437 DQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA----SDVKGFLELIKEW--PGHLYSVLTIISAT--E---------- 495 (846)
T ss_pred cccch---hhccCCCCCcccCchHHHHHHHHHHH----HHHHHHHHHHHhC--ChhhhhhhHHHhhc--c----------
Confidence 66543 44444444334556678888877765 2222233333332 22222222222211 0
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 046719 263 ERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEME 301 (808)
Q Consensus 263 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 301 (808)
.+..+. .-+...-..|+..|...++++.|.+++-...
T Consensus 496 ~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 496 PQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred hHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 111110 0111222337777888888888888776554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.83 E-value=13 Score=34.13 Aligned_cols=64 Identities=22% Similarity=0.242 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046719 519 AQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSS 583 (808)
Q Consensus 519 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 583 (808)
+.+||.+.--+...|+++.|.+.|+...+.+..-+-...|.-| .+.--|++.-|.+-|.+.-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhc
Confidence 4456666666667777777777777776654332222222222 222356677776666555543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=90.63 E-value=2.1 Score=37.97 Aligned_cols=75 Identities=16% Similarity=0.120 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC-----------HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 046719 674 VQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGK-----------LSEVKELVNDMKVKGLIPKADTYNILVKGYCNL 741 (808)
Q Consensus 674 ~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 741 (808)
+++|+.-|++++. +.|+.. ++..++.+|...+. +++|.+.|+++.+ ..|+...|..-+...
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~--- 123 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA--- 123 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH---
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH---
Confidence 3444445555555 566554 66666666654432 5556666666665 567766666555443
Q ss_pred CChhHHHHHHHHHHHCC
Q 046719 742 KDFGGAYIWYREMFENG 758 (808)
Q Consensus 742 g~~~~A~~~~~~~~~~~ 758 (808)
.+|-++..+..+.+
T Consensus 124 ---~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 124 ---AKAPELHMEIHKQG 137 (186)
T ss_dssp ---HTHHHHHHHHHHSS
T ss_pred ---HhhHHHHHHHHHHH
Confidence 23555555555543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.22 E-value=2.6 Score=40.91 Aligned_cols=77 Identities=21% Similarity=0.231 Sum_probs=54.9
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 046719 346 TCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMEN-----HGLAPNCITFNTL 420 (808)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l 420 (808)
++..++..+...|+.+.+...++++....+. +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 3444667777777888888888887776555 777888888888888888888888877654 4666666655544
Q ss_pred HHH
Q 046719 421 IDK 423 (808)
Q Consensus 421 i~~ 423 (808)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 433
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=90.14 E-value=6.4 Score=37.00 Aligned_cols=89 Identities=12% Similarity=0.113 Sum_probs=49.4
Q ss_pred HccCCHHHHHHHHHHHHHC----CCCCCH--HHHHHHHHHHHhcCCH-------hHHHHHHHHHHHCCCCC-----CHHH
Q 046719 669 AEHGDVQKALVLHSEMVDQ----GIRPDK--MTYNSLIFGHLREGKL-------SEVKELVNDMKVKGLIP-----KADT 730 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~----g~~pd~--~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~g~~p-----~~~~ 730 (808)
.....+++|++.|..++-. +.+|.. ..+..++|.|...|+. ..|.+.|.+..+..-.| +...
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 4445677777766655421 223332 2556677888777773 34444455444332221 1233
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
...++....+.|++++|.++|.+++..
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 445666666777777777777777654
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.92 E-value=5.6 Score=37.05 Aligned_cols=113 Identities=17% Similarity=0.094 Sum_probs=68.0
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChh
Q 046719 668 YAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKAD-TYNILVKGYCNLKDFG 745 (808)
Q Consensus 668 ~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~ 745 (808)
|....+++.|+..|.+.+. +.|... -|..=+.++.+..+++.+..=..++++ +.||.. ....++.++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 3445567777777777766 566664 344556666777777777776666666 566643 3445666667777777
Q ss_pred HHHHHHHHHHH----CCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 046719 746 GAYIWYREMFE----NGFIPSFCIYNELTNGLKQEGKLKEAQI 784 (808)
Q Consensus 746 ~A~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~g~~~~A~~ 784 (808)
+|+..++++.. ..+.+-..+...|..+-.+.....++.+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~R 138 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKR 138 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHH
Confidence 77777777743 2334444555555555444444444444
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.81 E-value=40 Score=38.19 Aligned_cols=249 Identities=14% Similarity=0.057 Sum_probs=123.3
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHhcCCCCCCChhhHHhhhhc---cCCCCCccHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 046719 51 RKIRILFQNNRTEAAQSLIKSIVLSNASPFTSPHELFSLFSV---SSPYYKPTFTNILLSILSSAKLPSEALQLYASTKA 127 (808)
Q Consensus 51 ~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 127 (808)
.-|...+..|++.-|..++++.-..-. .-+...-+..+... .....+|.+.-.-++......++.+|..+..++..
T Consensus 365 eAI~hAlaA~d~~~aa~lle~~~~~L~-~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~ 443 (894)
T COG2909 365 EAIDHALAAGDPEMAADLLEQLEWQLF-NGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEH 443 (894)
T ss_pred HHHHHHHhCCCHHHHHHHHHhhhhhhh-cccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 346777888898888888776411000 00111111111111 00112344433445567778889999988887655
Q ss_pred CCCCCCH-------HHHHHHHH-HHHHcCCHHHHHHHHHHHHHc----CCCcCHhhHHHHHHHHHhcCChHHHHHHHHHh
Q 046719 128 DGTRLSL-------DSINVLLE-CLVRCNQYDRALDLFDEIVCM----GFRPDKFTYGKAVQAAVKIGDLKRACEIFDGM 195 (808)
Q Consensus 128 ~~~~~~~-------~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 195 (808)
.-..|+. ..|+.|-. .....|+++.|..+-+..... -..+....+..+..+..-.|++++|+.+..+.
T Consensus 444 ~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a 523 (894)
T COG2909 444 FLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQA 523 (894)
T ss_pred HhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHH
Confidence 3222221 13443332 234468888888887776653 23345556667777777888888888887776
Q ss_pred hhCCCCCChhhH-----HHHHHHHHccCCH--hHHHHHHHHHHhC-----CC-CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 046719 196 EKSRTRPNVFVY-----NVLISGFCKEKKI--RDAEKLFDEMCQR-----KL-VPTRVTYNTLVDGYCKVGEFEKVSALR 262 (808)
Q Consensus 196 ~~~~~~~~~~~~-----~~l~~~~~~~g~~--~~A~~~~~~m~~~-----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~ 262 (808)
.+..-.-++..+ ..-...+-..|.. .+....|...... .. .+-..++..+..++.+ .+.+..-.
T Consensus 524 ~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ea 600 (894)
T COG2909 524 EQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEA 600 (894)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHh
Confidence 653222232222 2222334456632 2333333333221 00 0122333444444444 33332222
Q ss_pred HHHHh----CCCCcCHHHHH--HHHHHHHccCChhHHHHHHHHHHHC
Q 046719 263 ERMKR----DKVEVSLVMFN--SLLGGFCKAKRMEEAKSVCKEMEAH 303 (808)
Q Consensus 263 ~~~~~----~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~ 303 (808)
..-.+ ....|-...+. .|+......|++++|....+++...
T Consensus 601 r~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 601 RLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred hhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 22221 11222222222 4556666777777777777776553
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.58 E-value=1.6 Score=42.45 Aligned_cols=90 Identities=12% Similarity=0.120 Sum_probs=42.0
Q ss_pred HHHHcC-HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 046719 633 GCIREG-IVAVEKLFNEMLQINLVP-DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLS 710 (808)
Q Consensus 633 ~~~~~~-~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~ 710 (808)
-|.+.| +++|...|...+.. .| +.+++..-..+|.+..++..|..-...++..+ ..-.-.|..-+.+-...|+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 345555 55565555555542 23 45555555555555555555555544444321 000113333333333444455
Q ss_pred HHHHHHHHHHHCCCCCC
Q 046719 711 EVKELVNDMKVKGLIPK 727 (808)
Q Consensus 711 ~A~~~~~~~~~~g~~p~ 727 (808)
+|.+=++..++ ++|+
T Consensus 183 EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHhHHHHHh--hCcc
Confidence 55555555444 4444
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.19 E-value=45 Score=37.86 Aligned_cols=225 Identities=17% Similarity=0.144 Sum_probs=117.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcc----hh---HHHHHH-HHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 046719 494 LCKDCKLLEAEIVLKDMENRGVLPN----AQ---IYNMLI-DGSCTMGRIKDAFKFFDEMVKR----EMGPTLVTFNALI 561 (808)
Q Consensus 494 ~~~~~~~~~A~~~~~~m~~~~~~~~----~~---~~~~li-~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~ 561 (808)
.....++.+|..+..++...-..|+ .. .++.+- ......|+++.|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456677777777777654322211 11 233322 2234578899999988888764 1223455667777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHH--HHHcCCCHHH--HHHHHHHHHHC--CCCc----CHHhHH
Q 046719 562 NGLCKKGRVMEAEDMLPQITSSGLNPDVIT---YNSLIS--GYSSLGSSQK--CLELYENMKKL--GIKP----SLRTYH 628 (808)
Q Consensus 562 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~--~~~~~g~~~~--A~~~~~~~~~~--~~~p----~~~~~~ 628 (808)
.+..-.|++++|..+..+..+..-.-++.. |..+.. .+...|+... ....|...... .-.| -..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 788889999999988877665321223332 333322 3445663322 22233332221 0011 122333
Q ss_pred HHHHHHHHcC--HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC----CHHHHHHHH
Q 046719 629 PLLSGCIREG--IVAVEKLFNEMLQINLVPDLL--VYNALIHCYAEHGDVQKALVLHSEMVDQGIRP----DKMTYNSLI 700 (808)
Q Consensus 629 ~l~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p----d~~~~~~l~ 700 (808)
.++.++.+.. ..++..-+.-.......|-.. .+..|+..+...|++++|...++++......+ +..+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 3444444432 222222222222222222221 22367788888999999999999887643332 222222222
Q ss_pred HH--HHhcCCHhHHHHHHHH
Q 046719 701 FG--HLREGKLSEVKELVND 718 (808)
Q Consensus 701 ~~--~~~~g~~~~A~~~~~~ 718 (808)
.. -...|+.++|.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22 2356777777776665
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=89.14 E-value=6 Score=37.19 Aligned_cols=95 Identities=22% Similarity=0.116 Sum_probs=64.9
Q ss_pred HhcCCHhHHHHHHHHHH----HCCCCCC--HHHHHHHHHHHHccCCh-------hHHHHHHHHHHHCCCC-----CCHHH
Q 046719 704 LREGKLSEVKELVNDMK----VKGLIPK--ADTYNILVKGYCNLKDF-------GGAYIWYREMFENGFI-----PSFCI 765 (808)
Q Consensus 704 ~~~g~~~~A~~~~~~~~----~~g~~p~--~~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~-----~~~~~ 765 (808)
.....+++|++.+.-++ -.+..|. ...+..+++.|...|+. ..|.+.|.++.+..-. .+...
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 33445666666665543 1222333 45567889999999984 4566666666653322 23567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 766 YNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 766 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.+.++....+.|+.++|.+++.+++..+...-+
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~ 200 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKASKE 200 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCc
Confidence 788999999999999999999999987755553
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.06 E-value=3.3 Score=36.85 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=45.9
Q ss_pred HhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCC-----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046719 709 LSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKD-----------FGGAYIWYREMFENGFIPSFCIYNELTNGLKQE 776 (808)
Q Consensus 709 ~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 776 (808)
+++|+.-|++++. +.|+ ..++..++.+|...+. +++|...|+++... +|+...|..-.+...
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~-- 124 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA-- 124 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH--
Confidence 5666667777777 7786 5778888888765442 56667777777655 577777776655542
Q ss_pred CChhHHHHHHHHHHHc
Q 046719 777 GKLKEAQILCSEISIV 792 (808)
Q Consensus 777 g~~~~A~~~~~~~~~~ 792 (808)
+|-.+..++.+.
T Consensus 125 ----kap~lh~e~~~~ 136 (186)
T PF06552_consen 125 ----KAPELHMEIHKQ 136 (186)
T ss_dssp ----THHHHHHHHHHS
T ss_pred ----hhHHHHHHHHHH
Confidence 355555555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.82 E-value=3.2 Score=43.68 Aligned_cols=144 Identities=18% Similarity=0.128 Sum_probs=94.3
Q ss_pred cCHHhHHHHHHHHHHcC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHCCCCC--CHHH
Q 046719 622 PSLRTYHPLLSGCIREG---IVAVEKLFNEMLQINLVPDLLVYNALIHCYA-EHGDVQKALVLHSEMVDQGIRP--DKMT 695 (808)
Q Consensus 622 p~~~~~~~l~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~p--d~~~ 695 (808)
|+..+..+++.-....- -+-+..++..| +.-..|--.+.|. ...|. ..|+...|.+.+..+.. ..| ..+.
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~-~~~~~p~w~~ln~-aglywr~~gn~~~a~~cl~~a~~--~~p~~~~v~ 644 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAI-NKPNAPIWLILNE-AGLYWRAVGNSTFAIACLQRALN--LAPLQQDVP 644 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHh-cCCCCCeEEEeec-ccceeeecCCcHHHHHHHHHHhc--cChhhhccc
Confidence 55555555555444333 22233333333 3222332223332 33444 45899999998888775 344 2345
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTN 771 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 771 (808)
...|+..+.+.|...+|-.++.+.+... ...+-++..+++++....+.+.|++.++.+++..++ ++.+-+.|..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~ 718 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKL 718 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHH
Confidence 6678888888898899999998887643 456778888999999999999999999999988776 6666655543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.67 E-value=13 Score=32.01 Aligned_cols=74 Identities=15% Similarity=0.069 Sum_probs=51.7
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 702 GHLREGKLSEVKELVNDMKVKGLIPKAD-TYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGK 778 (808)
Q Consensus 702 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 778 (808)
.-...++.+++..++..+.- +.|+.. .-..-+..+...|+|++|..++++..+.++. .+..-..++.||...|+
T Consensus 19 ~aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~-~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA-PPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC-chHHHHHHHHHHHhcCC
Confidence 33458899999999999877 667532 2233456677899999999999999887654 34344445556655554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.59 E-value=21 Score=33.32 Aligned_cols=95 Identities=11% Similarity=-0.019 Sum_probs=54.5
Q ss_pred HHHHHHcc-CCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHH----
Q 046719 664 LIHCYAEH-GDVQKALVLHSEMVDQGIRPDKM------TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYN---- 732 (808)
Q Consensus 664 l~~~~~~~-g~~~~A~~~~~~~~~~g~~pd~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~---- 732 (808)
+...|-.. .+++.|+..|+..-+. ...+.. .+.-.+..-...+++.+|+.+|++.....+..+.--|.
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~-yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEY-YKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH-HcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 44444333 5778888888877653 111111 22333444556788999999999987654444432222
Q ss_pred --HHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 733 --ILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 733 --~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
.-+-++.-..|.-.+...+++-.+..|
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 222222233677777777777776655
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=88.53 E-value=48 Score=37.39 Aligned_cols=191 Identities=17% Similarity=0.094 Sum_probs=90.8
Q ss_pred HcCCCHHHHHHHHHHHHHCCC-Cc-----CHHhHHHHHHH--HHHcC-HHHHHHHHH--------HHHHCCCCCCHHHHH
Q 046719 600 SSLGSSQKCLELYENMKKLGI-KP-----SLRTYHPLLSG--CIREG-IVAVEKLFN--------EMLQINLVPDLLVYN 662 (808)
Q Consensus 600 ~~~g~~~~A~~~~~~~~~~~~-~p-----~~~~~~~l~~~--~~~~~-~~~a~~~~~--------~~~~~~~~~~~~~~~ 662 (808)
+-.+++..|....+.|.+..- .| ....+..++.+ +...| .+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 346677777777777764311 11 12223333333 22334 788888886 333344333333332
Q ss_pred H--HHHHHHccC--CHHH--HHHHHHHHHHC-CCCCC--HHHHHHH-HHHHHhcC--CHhHHHHHHHHHHHCC---CCCC
Q 046719 663 A--LIHCYAEHG--DVQK--ALVLHSEMVDQ-GIRPD--KMTYNSL-IFGHLREG--KLSEVKELVNDMKVKG---LIPK 727 (808)
Q Consensus 663 ~--l~~~~~~~g--~~~~--A~~~~~~~~~~-g~~pd--~~~~~~l-~~~~~~~g--~~~~A~~~~~~~~~~g---~~p~ 727 (808)
. ++..+...+ ...+ +.++++.+... .-.|+ ..+++.+ ++++.... ...++...+.+..+.- ...+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 2 122222222 2222 55566555431 11222 2233333 33433222 2235555555433211 1222
Q ss_pred ---HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC---CHHHHH-----HHHHHHHhcCChhHHHHHHHHHHH
Q 046719 728 ---ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP---SFCIYN-----ELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 728 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~-----~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
..+++.+...+. .|+..+..+....+.....+. ....|. .+...+...|+.++|.....+...
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 222334444444 788888777766665432222 344552 344557788999999988877643
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.51 E-value=3.1 Score=38.66 Aligned_cols=89 Identities=11% Similarity=-0.055 Sum_probs=73.8
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 046719 702 GHLREGKLSEVKELVNDMKVKGLIPKADT-YNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLK 780 (808)
Q Consensus 702 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 780 (808)
-|....++..|+..+.+.+. +.|+..+ |..-+-++.+..+|+.+..--.++++..+. .....+.++.++.....+.
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-LVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-HHHHHHHHHHHHHhhcccc
Confidence 45556678999998888887 7887755 557788888999999999999999987655 6788889999999999999
Q ss_pred HHHHHHHHHHHcC
Q 046719 781 EAQILCSEISIVG 793 (808)
Q Consensus 781 ~A~~~~~~~~~~~ 793 (808)
+|+..+.++....
T Consensus 96 eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 96 EAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999986544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.06 E-value=5.8 Score=38.46 Aligned_cols=52 Identities=12% Similarity=0.229 Sum_probs=24.4
Q ss_pred HHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 046719 634 CIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMV 685 (808)
Q Consensus 634 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 685 (808)
|.+...+++..+...=+..|+-||..+.+.+++.+.+.+++.+|..+...|.
T Consensus 111 llky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 111 LLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3333333444444444444455555555555555555555555544444443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=87.79 E-value=53 Score=37.04 Aligned_cols=185 Identities=14% Similarity=0.082 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHh-CCCCCCH--HHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcCHh-----hHHHHHHHHHhcCChH
Q 046719 116 SEALQLYASTKA-DGTRLSL--DSINVLLECLV-RCNQYDRALDLFDEIVCMGFRPDKF-----TYGKAVQAAVKIGDLK 186 (808)
Q Consensus 116 ~~a~~~~~~~~~-~~~~~~~--~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~ 186 (808)
..|...+..+.+ ..++|.. .+..-++..|. ...++++|...+.+.....-.++.. ....+++.+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 445555555553 2223322 34556667666 5688888988888775543222222 2234555666665555
Q ss_pred HHHHHHHHhhhC----CCCCChhhHHHH-HHHHHccCCHhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--hcCChh
Q 046719 187 RACEIFDGMEKS----RTRPNVFVYNVL-ISGFCKEKKIRDAEKLFDEMCQRK---LVPTRVTYNTLVDGYC--KVGEFE 256 (808)
Q Consensus 187 ~A~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~--~~g~~~ 256 (808)
|....++.++. +..+-...+..+ +..+...+++..|.+.++.+...- ..|-..++-.++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888876653 112223333333 233333478888888888776532 2333444444444433 456666
Q ss_pred HHHHHHHHHHhCC---------CCcCHHHHHHHHHHHH--ccCChhHHHHHHHHHH
Q 046719 257 KVSALRERMKRDK---------VEVSLVMFNSLLGGFC--KAKRMEEAKSVCKEME 301 (808)
Q Consensus 257 ~a~~~~~~~~~~~---------~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 301 (808)
++.+.++++.... ..|...+|..++..++ ..|++..+...++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777776663321 1335566777766655 5666666666655553
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=87.77 E-value=4.6 Score=41.40 Aligned_cols=132 Identities=14% Similarity=0.141 Sum_probs=89.2
Q ss_pred HHcC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 046719 635 IREG--IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEV 712 (808)
Q Consensus 635 ~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A 712 (808)
...| .....+++.-+......|+....-+ ......|+++.+...+...... +.....+...++....+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 3445 4445556666666544565544444 3456779999999888766543 444556777888899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 713 KELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELT 770 (808)
Q Consensus 713 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 770 (808)
.....-|+...++ ++.............|-++++...|++.+..+++.+....+.|.
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~ 433 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLS 433 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeec
Confidence 9999888866554 34444433444556788999999999998877665555544443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.67 E-value=20 Score=31.95 Aligned_cols=25 Identities=8% Similarity=0.290 Sum_probs=11.3
Q ss_pred HHhCCCCcCHHHHHHHHHHHHccCC
Q 046719 265 MKRDKVEVSLVMFNSLLGGFCKAKR 289 (808)
Q Consensus 265 ~~~~~~~~~~~~~~~li~~~~~~g~ 289 (808)
+.+.++.++...|..++..+.+.|+
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 3334444444444444444444444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.34 E-value=0.92 Score=27.58 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
.+|..++.++...|++++|.+.|+++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 356777888888888888888888887653
|
... |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.21 E-value=9.2 Score=35.76 Aligned_cols=62 Identities=6% Similarity=-0.061 Sum_probs=36.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 733 ILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 733 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
.+..++...|++-++++.-.+.+...+. +..+|..-+.+.....+..||..-+.+++...|.
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILRHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 3344445556666666666666655444 5566666666666666666666666666655544
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.19 E-value=5.6 Score=38.98 Aligned_cols=93 Identities=15% Similarity=0.028 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 697 NSLIFGHLREGKLSEVKELVNDMKVKGL-IP--KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGL 773 (808)
Q Consensus 697 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 773 (808)
.-=++-|.+..++..|...|.+-++... .| +.+.|+.-+.+-...|++..|+.=...++...|. ....|.+=+.|+
T Consensus 85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 85 KEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGAKCL 163 (390)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhhHHH
Confidence 3344555666666666666666543321 22 2445555555555666666666666666665544 556666666666
Q ss_pred HhcCChhHHHHHHHHHH
Q 046719 774 KQEGKLKEAQILCSEIS 790 (808)
Q Consensus 774 ~~~g~~~~A~~~~~~~~ 790 (808)
....++.+|..++++.+
T Consensus 164 ~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 66666666666665553
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.92 E-value=1.9 Score=45.31 Aligned_cols=126 Identities=9% Similarity=-0.081 Sum_probs=94.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHH
Q 046719 677 ALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK--ADTYNILVKGYCNLKDFGGAYIWYREM 754 (808)
Q Consensus 677 A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 754 (808)
|-.++-.| +..+.|--.+.|..+--....|+...|...+..+.. ..|. .+....|+..+.+.|-..+|-.++...
T Consensus 592 ~~~~~~~~-~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 592 GSFLFHAI-NKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHh-cCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 33344433 333444444554444444568999999999988765 3442 344567888889999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-hhhhHhhh
Q 046719 755 FENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT-NEDQSAVA 806 (808)
Q Consensus 755 ~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~ 806 (808)
+..... .+-.++.+++++....+...|++.++++.++.+++.. .+.++-++
T Consensus 669 l~~~~s-epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 669 LAINSS-EPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred Hhhccc-CchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 987755 7778888999999999999999999999999999888 66665543
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.86 E-value=44 Score=35.13 Aligned_cols=75 Identities=8% Similarity=-0.047 Sum_probs=36.2
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCHhhHHH
Q 046719 308 DGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNA-LCKEGKVEIAEEIVGKEIENGLVPDEVMFNT 384 (808)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 384 (808)
|...|...+.-+-+.+.+.+...+|.+|.... +.++..|..-... |-.+-+++.|..+|.+-+..++. +...|-.
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd-sp~Lw~e 179 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD-SPKLWKE 179 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC-ChHHHHH
Confidence 55555555555555555555555555555542 1122333222222 22233466777777666665433 3334433
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=86.71 E-value=1 Score=27.07 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=20.9
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
+..++.++.+.|++++|.+.|+++++.-|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 45567777777888888888888776543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.66 E-value=9.4 Score=34.87 Aligned_cols=75 Identities=13% Similarity=-0.025 Sum_probs=47.0
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 046719 709 LSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFEN---GFIPSFCIYNELTNGLKQEGKLKEAQI 784 (808)
Q Consensus 709 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~g~~~~A~~ 784 (808)
-++|.+.|-++...+..-++.....|+.-|. ..|.++|+.++.++++. +-.+|+.++..|+..+.+.|+++.|.-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 3566666666665554445555555554443 56677777777777663 224567777777777777777777754
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.54 E-value=28 Score=32.54 Aligned_cols=87 Identities=10% Similarity=0.121 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHH--CCCCCCHHHHHHHHH---HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH------HHHHHHhcC
Q 046719 639 IVAVEKLFNEMLQ--INLVPDLLVYNALIH---CYAEHGDVQKALVLHSEMVDQGIRPDKMTYNS------LIFGHLREG 707 (808)
Q Consensus 639 ~~~a~~~~~~~~~--~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~------l~~~~~~~g 707 (808)
++.|...|++.-+ +|-..+...--+++. .-+..|++.+|+.+|++.....+..+..-|.. -+-++.-..
T Consensus 130 ~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~ 209 (288)
T KOG1586|consen 130 FEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKA 209 (288)
T ss_pred HHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcc
Confidence 6778888887766 233333333333332 23567899999999999987644433333322 112222234
Q ss_pred CHhHHHHHHHHHHHCCCCCC
Q 046719 708 KLSEVKELVNDMKVKGLIPK 727 (808)
Q Consensus 708 ~~~~A~~~~~~~~~~g~~p~ 727 (808)
+.-.+...+++-.+ ..|+
T Consensus 210 D~v~a~~ALeky~~--~dP~ 227 (288)
T KOG1586|consen 210 DEVNAQRALEKYQE--LDPA 227 (288)
T ss_pred cHHHHHHHHHHHHh--cCCc
Confidence 55555566666665 5564
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.26 E-value=0.54 Score=45.90 Aligned_cols=119 Identities=12% Similarity=0.044 Sum_probs=85.2
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChhHH
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA-DTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A 747 (808)
...|.+++|+++|...++.+ +|....|..-..++.+.++...|++=+...++ +.||. ..|-.-..+....|+|++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHH
Confidence 45788999999999998852 34455777778888899999999998888887 66764 3355556666778999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 748 YIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
...+..+.+.++.+....+. -...-..++.++-...+++..+.
T Consensus 202 a~dl~~a~kld~dE~~~a~l--KeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSATL--KEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHHhccccHHHHHHH--HHhccchhhhhhchhHHHHHHHH
Confidence 99999999988876655543 33334445555555555555443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.25 E-value=1.5 Score=28.06 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=14.3
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 730 TYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 730 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
+++.++..|...|++++|..+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555555555555555555555543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.23 E-value=1.7 Score=27.90 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 764 CIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 764 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
.+++.|+..|...|++++|..++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 568899999999999999999999998643
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=86.02 E-value=63 Score=36.06 Aligned_cols=30 Identities=27% Similarity=0.209 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046719 413 NCITFNTLIDKFCELGEMDKAEEWVKRMLE 442 (808)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 442 (808)
+.....-++..|.+.|-.+.|.++.+.+-.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~ 433 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQ 433 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444455556666666666666666655443
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.62 E-value=36 Score=32.98 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=29.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046719 350 LLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQM 405 (808)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 405 (808)
....|..+|.+.+|.++.++.+..++- +...|..++..+...|+--.+...++.+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 444555556666666655555544322 4445555555565556555555555544
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.47 E-value=8.8 Score=41.15 Aligned_cols=73 Identities=22% Similarity=0.075 Sum_probs=37.0
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCchhhhHhh
Q 046719 732 NILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWTNEDQSAV 805 (808)
Q Consensus 732 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 805 (808)
..+..+|....+.|.|.++++++.+.++. ++-.-..........|+.++|+..+-+....-.+..++...+++
T Consensus 398 R~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~~~~~~~~l~~ 470 (872)
T KOG4814|consen 398 RALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDEKSTDALILAV 470 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccchhHHHH
Confidence 34444555555666666666666555444 33333344444455555666665555555544444443333333
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=84.56 E-value=1.7 Score=25.34 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 766 YNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 766 ~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
+..++.++...|++++|...+++.++.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 334444444455555555555444443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=84.54 E-value=1.4 Score=24.98 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 046719 765 IYNELTNGLKQEGKLKEAQILCS 787 (808)
Q Consensus 765 ~~~~l~~~l~~~g~~~~A~~~~~ 787 (808)
....++..+...|+.++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34456666666666666666554
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=84.35 E-value=30 Score=30.87 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=23.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 046719 225 KLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALR 262 (808)
Q Consensus 225 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 262 (808)
+..+.+.+.++.|+...+..+|..+.+.|++.....++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34445556666777777777777777777655544433
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=84.21 E-value=60 Score=34.28 Aligned_cols=95 Identities=11% Similarity=0.136 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 046719 553 TLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLS 632 (808)
Q Consensus 553 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 632 (808)
|.....+++..+..+-+++-...+..+|...| -+-..|..++.+|... ..++-..+|+++.+..+ .|.+.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 34444555666666666666666666666543 2344555666666555 44555666666655322 22333333333
Q ss_pred HHHHcCHHHHHHHHHHHHH
Q 046719 633 GCIREGIVAVEKLFNEMLQ 651 (808)
Q Consensus 633 ~~~~~~~~~a~~~~~~~~~ 651 (808)
.|.+...+.+..+|.+++.
T Consensus 141 ~yEkik~sk~a~~f~Ka~y 159 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALY 159 (711)
T ss_pred HHHHhchhhHHHHHHHHHH
Confidence 3443225555555555443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.93 E-value=78 Score=35.40 Aligned_cols=77 Identities=13% Similarity=0.098 Sum_probs=37.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCC-CChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 046719 175 AVQAAVKIGDLKRACEIFDGMEKSRTR-PNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVG 253 (808)
Q Consensus 175 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 253 (808)
-++.+.+.+.+++|+..-+.....-.. .-..++...|..+.-.|++++|-...-.|... +..-|..-+..+...+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 344555555666665555544332110 02234555555555556666666555555543 4444444444444444
Q ss_pred Ch
Q 046719 254 EF 255 (808)
Q Consensus 254 ~~ 255 (808)
+.
T Consensus 438 ~l 439 (846)
T KOG2066|consen 438 QL 439 (846)
T ss_pred cc
Confidence 43
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.73 E-value=7.6 Score=37.88 Aligned_cols=63 Identities=8% Similarity=-0.268 Sum_probs=29.4
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 735 VKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 735 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
-.+|.+.++++.|+...+.++...|. ++.-+.-.+-.|.+.|.++.|..-++..++.-|+...
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 33444444444444444444444443 3444444444444444444554444444444444444
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.46 E-value=64 Score=34.04 Aligned_cols=238 Identities=13% Similarity=0.155 Sum_probs=124.8
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhc------CCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHH-HHHH
Q 046719 365 EIVGKEIENGLVPDEVMFNTIVSGYCRT------GDLNRAMLAIQQMENHG-LAP-NCITFNTLIDKFCELGEMD-KAEE 435 (808)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~li~~~~~~------g~~~~A~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~-~A~~ 435 (808)
.+|+..++. .|+...|+..|..+... ..+...+.+++...+.+ ..+ ....|..+...++...... -|+.
T Consensus 303 ~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~ 380 (568)
T KOG2396|consen 303 AVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVK 380 (568)
T ss_pred HHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHH
Confidence 555555442 34556666666665432 24455556666655433 222 3344555555555544433 3333
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHH-HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HHHH-H-HHHHHH
Q 046719 436 WVKRMLEKGVSPNVKTNNTLIDGYGRMG-HFDKC-FQILEEMENSGMKPNVVSYGSLINWLCKDCK-LLEA-E-IVLKDM 510 (808)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a-~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~A-~-~~~~~m 510 (808)
+..+.. .-+...|..-+....+.. +++-- ..+|......-..+....|+... .++ .... . .+....
T Consensus 381 l~~e~f----~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 381 LTTELF----RDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred hhHHHh----cchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 333333 335555555444444221 22211 12223332221222333333333 122 2111 1 122222
Q ss_pred HhCCCCcchhH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHh-CCCC
Q 046719 511 ENRGVLPNAQI-YNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCK--KGRVMEAEDMLPQITS-SGLN 586 (808)
Q Consensus 511 ~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~-~~~~ 586 (808)
... ..|+..+ -+.+++-+.+.|-.++|...|..+... .+|+...|..++..-.. .-++..++.+++.|.. .|
T Consensus 452 ~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg-- 527 (568)
T KOG2396|consen 452 LSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG-- 527 (568)
T ss_pred HHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--
Confidence 222 3344444 356777778888888999999888775 46677777777764321 1237778888888875 44
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 046719 587 PDVITYNSLISGYSSLGSSQKCLELYENMKK 617 (808)
Q Consensus 587 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 617 (808)
.|+..|...+..-...|..+.+-.++.+..+
T Consensus 528 ~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 528 ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 5677777777766778888888777776654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.33 E-value=17 Score=38.87 Aligned_cols=132 Identities=15% Similarity=0.208 Sum_probs=80.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 046719 311 TYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYC 390 (808)
Q Consensus 311 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 390 (808)
..+.+++.+.++|-.++|+++-- |+.. -.....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~---------D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELST---------DPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCC---------Chhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 34455666666666666655321 1111 2233446677777777665532 5667888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 046719 391 RTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQ 470 (808)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 470 (808)
+.|++..|.+.|....+ |..|+..+...|+-+.-..+-....+.|.. | .-.-+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHHHHH
Confidence 88888888888776653 445666666677766555555555555432 2 22234566788888877
Q ss_pred HHHHH
Q 046719 471 ILEEM 475 (808)
Q Consensus 471 ~~~~m 475 (808)
++.+-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 77654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.63 E-value=14 Score=36.03 Aligned_cols=100 Identities=15% Similarity=0.190 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhH
Q 046719 131 RLSLDSINVLLECLVRCNQYDRALDLFDEIVCMG---FRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVY 207 (808)
Q Consensus 131 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 207 (808)
+.+..+...++..-....+.+.+...+-+..... ..|+ .+-..+++.| ..-++++++.+...-+.-|+-||.+++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHH-HccChHHHHHHHhCcchhccccchhhH
Confidence 3333344444444444556666666555443210 0111 0111222222 223556666666666666666777777
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHh
Q 046719 208 NVLISGFCKEKKIRDAEKLFDEMCQ 232 (808)
Q Consensus 208 ~~l~~~~~~~g~~~~A~~~~~~m~~ 232 (808)
+.+|+.+.+.+++.+|.++-..|..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7777777777777666666555544
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.34 E-value=1.8 Score=44.67 Aligned_cols=97 Identities=13% Similarity=0.044 Sum_probs=70.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccC
Q 046719 665 IHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYN-SLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLK 742 (808)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g 742 (808)
++-..+.+.++.|..++.++++ +.||...|. .=..++.+.+++..|+.=+.++++ ..|+ ...|..-+.++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhHH
Confidence 4455677889999999999988 678766443 344788888899998888888887 4464 345556667777788
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHH
Q 046719 743 DFGGAYIWYREMFENGFIPSFCIY 766 (808)
Q Consensus 743 ~~~~A~~~~~~~~~~~~~~~~~~~ 766 (808)
.+.+|+..|+......|. ++...
T Consensus 87 ~~~~A~~~l~~~~~l~Pn-d~~~~ 109 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPN-DPDAT 109 (476)
T ss_pred HHHHHHHHHHHhhhcCcC-cHHHH
Confidence 888888888888766544 44433
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.21 E-value=25 Score=33.80 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=68.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHhcCCHhHHHHHHHHHHHC--CC-CC-CHHHHHH
Q 046719 665 IHCYAEHGDVQKALVLHSEMVDQGIRPDKMT-------YNSLIFGHLREGKLSEVKELVNDMKVK--GL-IP-KADTYNI 733 (808)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~-~p-~~~~~~~ 733 (808)
.+-..+.+++++|+..+.+++.+|...|..+ ...+...|...|++..-.+......+. ++ .| .......
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3445566777777777777777776655433 345667777777665544444332211 01 11 1222334
Q ss_pred HHHHHHc-cCChhHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046719 734 LVKGYCN-LKDFGGAYIWYREMFENGFIPSF-----CIYNELTNGLKQEGKLKEAQILCSEIS 790 (808)
Q Consensus 734 l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~l~~~g~~~~A~~~~~~~~ 790 (808)
|+.-+-. ...++.-+++....++-...... ..-..++..+++.|++.+|+.+++.++
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4443322 23455555555544432222111 122457788999999999998887665
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=82.09 E-value=94 Score=35.00 Aligned_cols=28 Identities=25% Similarity=0.188 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHh---cCChHHHHHHHHHHHh
Q 046719 555 VTFNALINGLCK---KGRVMEAEDMLPQITS 582 (808)
Q Consensus 555 ~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 582 (808)
.-+..||..|.+ ..+..+|.+++--+..
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 445566666654 3456666666655554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.00 E-value=17 Score=28.93 Aligned_cols=60 Identities=13% Similarity=0.229 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 046719 222 DAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLG 282 (808)
Q Consensus 222 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 282 (808)
+..+-+..+....+.|++....+.+.+|.|.+++..|.++|+.++.. +.+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 55666677777777888888888888888888888888888887654 2222225555443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=81.46 E-value=2.6 Score=27.61 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=13.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHH
Q 046719 733 ILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 733 ~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
.|..+|...|+.+.|.+++++.++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 345555555555555555555554
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.03 E-value=63 Score=32.29 Aligned_cols=85 Identities=18% Similarity=0.041 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--------
Q 046719 675 QKALVLHSEMVDQGIRPDKMTYNSLIFGHLR----EGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLK-------- 742 (808)
Q Consensus 675 ~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-------- 742 (808)
..|...|.++.+.+ +......++..|.. ..+.++|..+|++..+.|. ......+. .+...|
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhh
Confidence 35666666666654 33333344444432 2356677777777666553 23333333 344333
Q ss_pred -------ChhHHHHHHHHHHHCCCCCCHHHH
Q 046719 743 -------DFGGAYIWYREMFENGFIPSFCIY 766 (808)
Q Consensus 743 -------~~~~A~~~~~~~~~~~~~~~~~~~ 766 (808)
+...|..++......++.......
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 275 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFDNACEAL 275 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCChhHHHHH
Confidence 777778888777777666444333
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.83 E-value=1.8e+02 Score=37.47 Aligned_cols=320 Identities=10% Similarity=0.019 Sum_probs=165.1
Q ss_pred HHHHHHHccCCHhHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 046719 209 VLISGFCKEKKIRDAEKLFDEM----CQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGF 284 (808)
Q Consensus 209 ~l~~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 284 (808)
.+..+-.+++.+.+|...|+.- .+. .-...-|-.+...|...+++|....+...-. -.|+ ....|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~---a~~s---l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRF---ADPS---LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhh---cCcc---HHHHHHHH
Confidence 4445556788999999999883 221 1122334455558999999999998887421 1222 23445566
Q ss_pred HccCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHH
Q 046719 285 CKAKRMEEAKSVCKEMEAHGFDPD-GFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIA 363 (808)
Q Consensus 285 ~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 363 (808)
...|++..|...|+.+...+ |+ ..+++.++......|.+..+.-..+.......+-....++.=+.+-.+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhh
Confidence 78899999999999998763 44 6677777777777788877777655554432111112223334444677777776
Q ss_pred HHHHHHHHHCCCCCCHhhHHHH--HHHHHhcC--CHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHhcCCH
Q 046719 364 EEIVGKEIENGLVPDEVMFNTI--VSGYCRTG--DLNRAMLAIQQMENHGLAP---------NCITFNTLIDKFCELGEM 430 (808)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~ 430 (808)
...+. +. +..+|.+. +....+.. +.-.-.+..+.+.+.-+.| -...|..++....-..--
T Consensus 1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 66654 22 33344433 33332222 2111112333332211110 112233333322211111
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH-HHC----CC-CCCHhhHHHHHHHHHhcCCHHHHH
Q 046719 431 DKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEM-ENS----GM-KPNVVSYGSLINWLCKDCKLLEAE 504 (808)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m-~~~----~~-~~~~~~~~~ll~~~~~~~~~~~A~ 504 (808)
.....+...-.......+..-|..-+..-....+..+-+--+++. ... +. .--..+|....+...+.|+++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 111111100000000111111222221111111122211111111 111 11 112456777777778899999998
Q ss_pred HHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 046719 505 IVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR 548 (808)
Q Consensus 505 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 548 (808)
..+-...+.+ -+..+-..+...-..|+...|+.++++.++.
T Consensus 1691 nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1691 NALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 7766665553 3345566677788899999999999988865
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.81 E-value=13 Score=29.16 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 046719 711 EVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMF 755 (808)
Q Consensus 711 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 755 (808)
++.+-++.+...++.|++......+.+|.+.+|+.-|+++++-..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555667777777777777777777777777776554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=80.80 E-value=1e+02 Score=34.47 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=0.0
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 046719 739 CNLKDFGGAYIWYREMFENGFIPSFCIYNEL 769 (808)
Q Consensus 739 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 769 (808)
.+.|++.+|.+.+-.+++...-|.......|
T Consensus 506 ~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL 536 (566)
T PF07575_consen 506 YDEGDFREAASLLVSLLKSPIAPKSFWPLLL 536 (566)
T ss_dssp -------------------------------
T ss_pred HhhhhHHHHHHHHHHHHCCCCCcHHHHHHHH
Confidence 3457888888877777776666554443333
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.41 E-value=12 Score=29.40 Aligned_cols=62 Identities=13% Similarity=0.206 Sum_probs=40.4
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 046719 220 IRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLG 282 (808)
Q Consensus 220 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 282 (808)
.-+.++-+..+......|++....+.+++|.|.+|+.-|.++|+.++.. +..+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 3355666666666777788888888888888888888888888776632 2223334544443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=80.33 E-value=84 Score=33.28 Aligned_cols=53 Identities=21% Similarity=-0.033 Sum_probs=39.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 741 LKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 741 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
..+.+.|++.+-+- .|+..-..+-..|+..+...|+|..=-.-.++++++++.
T Consensus 359 rkdpewAikviiks--~~~~nlKeIK~ELVpsli~e~dWnsWsqkAK~ilKk~t~ 411 (711)
T COG1747 359 RKDPEWAIKVIIKS--LGPKNLKEIKQELVPSLIPEGDWNSWSQKAKKILKKSTR 411 (711)
T ss_pred hhChHHHHHHHHHh--cCCccHHHHHHHHHHhhCChhhhhHHHHHHHHHHhcCCc
Confidence 46778888876443 466533567778999999999998777777777777755
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.06 E-value=61 Score=31.54 Aligned_cols=61 Identities=13% Similarity=-0.020 Sum_probs=48.8
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
+......|..+|.+.+|..+.++++..++- +...+-.|...|...|+-.+|.+-++++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 345566778889999999999888887765 7788888888888889888888888777653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 103 bits (256), Expect = 1e-22
Identities = 23/199 (11%), Positives = 57/199 (28%), Gaps = 4/199 (2%)
Query: 356 KEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENH---GLAP 412
+ +++ + G+ + L + T L A +
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 413 NCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQ-I 471
+N ++ + G + + + + G++P++ + + GR +
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 472 LEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCT 531
LE+M G+K + L++ + L V LP + L+
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
Query: 532 MGRIKDAFKFFDEMVKREM 550
K + +
Sbjct: 284 KDGRVSYPKLHLPLKTLQC 302
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 86.0 bits (211), Expect = 2e-17
Identities = 33/292 (11%), Positives = 75/292 (25%), Gaps = 6/292 (2%)
Query: 433 AEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLIN 492
A + SP + L+ D + + + +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 493 WLCKDCKLLEAEIVL---KDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKRE 549
+L A +L + L +YN ++ G G K+ +
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 550 MGPTLVTFNALINGLCKKGRVMEA-EDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKC 608
+ P L+++ A + + ++ + E L Q++ GL + L+S +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 609 LELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCY 668
++ P LL + + L+ + +
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASR 315
Query: 669 AEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMK 720
V+K + E+ + L L ++
Sbjct: 316 VCVVSVEKPTLPSKEVKHARKTLKTLRDQW--EKALCRALRETKNRLEREVY 365
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 85.3 bits (209), Expect = 4e-17
Identities = 43/357 (12%), Positives = 105/357 (29%), Gaps = 21/357 (5%)
Query: 163 MGFRPDKFTYGKAVQAAVKIGDLKRACEIFD---GMEKSRTRPNVFVYNVLISGFCKEKK 219
+ + + L A + G + R + +YN ++ G+ ++
Sbjct: 121 AQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA 180
Query: 220 IRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEK-VSALRERMKRDKVEVSLVMFN 278
++ + + L P ++Y + + + + E+M ++ +++ +
Sbjct: 181 FKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240
Query: 279 SLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGR 338
LL +A ++ V P S L + Y +L
Sbjct: 241 VLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA----KDGRVSYPKLHLP 296
Query: 339 GFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVP-DEVMFNTIVSGYCRTGDLNR 397
+ L +E+A + +E +P EV R
Sbjct: 297 LKTLQCLFEKQL--------HMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKA 348
Query: 398 AMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLID 457
A+++ +N +L C L E + ++ + + ++ TL
Sbjct: 349 LCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQ--ALPAQGESFTTLAR 406
Query: 458 GYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRG 514
+ + + ++ Y + L D ++ E + + E G
Sbjct: 407 ELSARTF--SRHVVQRQRVSGQVQALQNHYRKYLCLLASDAEVPEPCLPRQYWEALG 461
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 84.5 bits (207), Expect = 7e-17
Identities = 28/226 (12%), Positives = 69/226 (30%), Gaps = 5/226 (2%)
Query: 566 KKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLG---SSQKCLELYENMKKLGIKP 622
K + + Q + + L+ + + L ++ ++
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 623 SLRTYHPLLSGCIREGIVA-VEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALV-L 680
+L Y+ ++ G R+G + + + L PDLL Y A + C +
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 681 HSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCN 740
+M +G++ + L+ R L V ++ + +P + L++
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
Query: 741 LKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILC 786
+ + + ++ EL + + K
Sbjct: 284 KDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSK 329
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 78.7 bits (192), Expect = 5e-15
Identities = 25/209 (11%), Positives = 68/209 (32%), Gaps = 5/209 (2%)
Query: 573 AEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLS 632
A + + +P L+ S + + +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 633 GCIREGIV----AVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQG 688
C+ + + + + Q + L +YNA++ +A G ++ + + + D G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 689 IRPDKMTYNSLIFGHLREGKLSE-VKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGA 747
+ PD ++Y + + R+ + + ++ + M +GL +A +L+
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 748 YIWYREMFENGFIPSFCIYNELTNGLKQE 776
+ +P ++L + +
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.9 bits (151), Expect = 3e-10
Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 4/153 (2%)
Query: 103 NILLSILSSAKLPSEA---LQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDE 159
A L ++ + L+LD N ++ R + + +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 160 IVCMGFRPDKFTYGKAVQAAVKIGDLKRACE-IFDGMEKSRTRPNVFVYNVLISGFCKEK 218
+ G PD +Y A+Q + E + M + + VL+S +
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250
Query: 219 KIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCK 251
++ K+ +P V + L+
Sbjct: 251 VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 2e-12
Identities = 77/588 (13%), Positives = 173/588 (29%), Gaps = 191/588 (32%)
Query: 229 EMCQRKLVPTRVTYNTLV-DGYCK-VGEFEKVSALRER------MKRDKVEVSLVMFNSL 280
+ + ++ V + V + CK V + K S L + M +D V +L +F +L
Sbjct: 15 QYQYKDILS--VFEDAFVDNFDCKDVQDMPK-SILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 281 LGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSK-CGDGEGVMALYEELSGRG 339
L + + + ++ + Y L + +Y E R
Sbjct: 72 L---------SKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 340 FRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAM 399
+ N + + V + ++ L+ N ++ G +G +
Sbjct: 120 YNDNQ---------VFAKYNVSRLQPY--LKLRQALLELRPAKNVLIDGVLGSG---KTW 165
Query: 400 LAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGY 459
+A+ ++ + + I F W+
Sbjct: 166 VALDVCLSYKVQCK---MDFKI--F-----------WLN--------------------- 188
Query: 460 GRMGHFDKCFQILEEMEN--SGMKPNVVSYGS-------LINWLCKDCKLLEAE------ 504
+ + + +LE ++ + PN S I+ + + + L
Sbjct: 189 --LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 505 -IVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVT------F 557
+VL +++N NA + SC L+T
Sbjct: 247 LLVLLNVQNAKAW-NA------FNLSCK---------------------ILLTTRFKQVT 278
Query: 558 NALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKK 617
+ L + L PD K L + +
Sbjct: 279 DFLSAATTTHISLDHHSM--------TLTPD-----------EVKSLLLKYL----DCRP 315
Query: 618 LGIKPSLRTYHPLLSGCI----REGI--------VAVEKLFNEMLQI---NLVPDLL--V 660
+ + T +P I R+G+ V +KL +++ L P +
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-TTIIESSLNVLEPAEYRKM 374
Query: 661 YNAL-IHCYAEHGDV-QKAL-VLHSEMVDQGIRP--DKMTYNSLIFGHLREGKLS----- 710
++ L + + + L ++ +++ + +K+ SL+ +E +S
Sbjct: 375 FDRLSV--FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 711 -EVKELVNDMKV--KGLIPKADTYNILVKGYCN---LKDFGGAYI-WY 751
E+K + + + ++ D YNI K + + + + Y +
Sbjct: 433 LELKVKLENEYALHRSIV---DHYNIP-KTFDSDDLIPPYLDQYFYSH 476
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 9e-12
Identities = 103/710 (14%), Positives = 205/710 (28%), Gaps = 192/710 (27%)
Query: 37 NHNSHGDQERNEQVRKIRILFQNNRTEAAQSLIKSI----VLSNASPFTSPHELFSLFSV 92
+H+ H D E E + + + + + + V S E+ +
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFE----DAFVDNFDCKDVQDMPKSILSKEEIDHIIMS 57
Query: 93 SSPYYKPTFTNILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECL-VRCNQYD 151
T L L S E +Q + L ++ L+ + Q
Sbjct: 58 KDAVSG---TLRLFWTLLSK--QEEMVQKFV-----EEVLRIN-YKFLMSPIKTEQRQPS 106
Query: 152 RALDLFDEIVCMGFR-PDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVL 210
++ E + F V L++A + + R NV + VL
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYN-VSRLQPYLKLRQA------LLELRPAKNVLIDGVL 159
Query: 211 ISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGE--FEKVSALRERMKRD 268
SG K + Q K+ ++ + L C E E + L ++ +
Sbjct: 160 GSG----KTWVALDVCLSYKVQCKM-DFKIFWLNL--KNCNSPETVLEMLQKLLYQIDPN 212
Query: 269 KVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKC------ 322
S N L R+ ++ + + + Y C
Sbjct: 213 WTSRSDHSSNIKL-------RIHSIQAELRRL-------------LKSKPYENCLLVLLN 252
Query: 323 -GDGEGVMALYEELSGRGFRINSYTCSILL--------NALCKEGKVEIAEEIVGKEIEN 373
+ + A F ++ C ILL + L I
Sbjct: 253 VQNAKAWNA---------FNLS---CKILLTTRFKQVTDFL----SAATTTHISLDHHSM 296
Query: 374 GLVPDEVMFNTIVSGY--CRTGDLNR----------AMLA--IQQMENHG---LAPNCIT 416
L PDEV +++ Y CR DL R +++A I+ NC
Sbjct: 297 TLTPDEVK--SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 417 FNTLIDKFCELGEMDKAEEWVKRMLEK-GVSP-NVK-TNNTLIDGYGRMGHFDKCFQILE 473
T+I+ L ++ AE ++M ++ V P + L + + D ++
Sbjct: 355 LTTIIESS--LNVLEPAE--YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD-VMVVVN 409
Query: 474 EMENSGM-----KPNVVSYGSLINWLCKDC--------KLLEAEIVLKDMENRGVLPNAQ 520
++ + K + +S S+ L +++ + K ++ ++P
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 521 ---IYNMLIDG----SCTMGRIKDAFK--FFDEMVKREMGPTLVTFNALINGLCKKGRVM 571
Y+ + G + F+ F D F L +
Sbjct: 470 DQYFYSHI--GHHLKNIEHPERMTLFRMVFLD-------------FRFLEQKIRHDS--- 511
Query: 572 EAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLL 631
S + + L+ Y+ I + Y L+
Sbjct: 512 -----TAWNASGSILNTLQQ-----------------LKFYKPY----ICDNDPKYERLV 545
Query: 632 SGCI----REGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAE-HGDVQK 676
+ + + + + ++L+I L+ + A+ + E H VQ+
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRIALMAE---DEAI---FEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 1e-10
Identities = 78/581 (13%), Positives = 160/581 (27%), Gaps = 175/581 (30%)
Query: 3 RQLRHPPKFPPIFLPSLSLSLSLSRSLCSQSSNSNHNSHGDQERNEQVRKIRILFQNNRT 62
R F + L L L ++L N G + +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-----V------ 166
Query: 63 EAAQSLIKSIVLSNASPFTSPHELF--SLFSVSSPYYKPTFTNILLSILSSAKLPSEALQ 120
A S + F ++F +L + +SP T +L +L +
Sbjct: 167 -ALDVC-LSYKVQCKMDF----KIFWLNLKNCNSP---ETVLEMLQKLLYQIDPNWTSRS 217
Query: 121 LYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAV 180
++S +L + SI L L++ Y+ L + V + KA A
Sbjct: 218 DHSSN----IKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQ-----NA----KAWNA-- 261
Query: 181 KIGDLKRACEIFDGMEKSR----TRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLV 236
F+ + TR V + L + + + L
Sbjct: 262 -----------FNL--SCKILLTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL- 306
Query: 237 PTRVTYNTLVDGYCKVGEFEKVSALR-ERMKRDKVEVS-LVMFNSLLGGFCK-------- 286
K R + + R+ + + + S++ +
Sbjct: 307 ------------------LLKYLDCRPQDLPREVLTTNPRRL--SIIAESIRDGLATWDN 346
Query: 287 -----AKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFR 341
++ + +P + +++ LS F
Sbjct: 347 WKHVNCDKLTTIIESSLNV----LEPAEYR------------------KMFDRLS--VFP 382
Query: 342 INSYTCSILLNALCKEGKVEIAEEIVGKEIENGLV---PDEVMFNTIVSGYCRT------ 392
+++ +ILL+ + + +V K + LV P E +I S Y
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLEN 441
Query: 393 -GDLNRAML----AIQQMENHGLAPNCITFNTLIDK--FCELG----EMDKAEE------ 435
L+R+++ + ++ L P +D+ + +G ++ E
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPY------LDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 436 ------WVKRMLEK-GVSPNVKT--NNTLID--GYGRMGHFDKCFQILEEMENSGMKPNV 484
++++ + + N NTL Y + E + N+ + +
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP--YICDNDPKYERLVNA-ILDFL 552
Query: 485 VSYGS-LINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNM 524
LI K LL I L + I+
Sbjct: 553 PKIEENLIC--SKYTDLL--RIALMA-------EDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 40/158 (25%)
Query: 646 FNEMLQINL---VPDLLVYNALIHCYAEHGDVQKAL--VLHSEMVDQGIR-PDKMTYNSL 699
+ ++L + V + C DVQ +L E +D I D ++
Sbjct: 18 YKDILSVFEDAFVDNF-------DCK----DVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 700 IFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGY---CNLKDFG-GAYIWYREMF 755
+F L + V++ V ++ Y L+ YI R+
Sbjct: 67 LFWTLLSKQEEMVQKFVEEV-------LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 756 ENGFIPSFCIYN--------ELTNGLKQEGKLKEAQIL 785
N F YN +L L + L+ A+ +
Sbjct: 120 YND-NQVFAKYNVSRLQPYLKLRQALLE---LRPAKNV 153
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 49/277 (17%), Positives = 85/277 (30%), Gaps = 42/277 (15%)
Query: 519 AQIYNMLIDGSCTMGRIKDAFKFFD---EMVKREMGP----TLVTFNALINGLCKKGRVM 571
+ + L+ + GR + A E +++ G N L + +
Sbjct: 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 86
Query: 572 EAEDMLPQ---ITSSGL---NPDV-ITYNSLISGYSSLGSSQKCLELYE-----NMKKLG 619
+A ++L I L +P V T N+L Y G ++ L + K LG
Sbjct: 87 DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146
Query: 620 IK-PS-LRTYHPLLSGCIREG-IVAVEKLFNEMLQINLV------PDLLV-YNALIHCYA 669
P + + L C +G VE + L+I P++ N L CY
Sbjct: 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL 206
Query: 670 EHGDVQKALVLHSEMVDQGIR-------PD-KMTYNSLIFGHLREGKLSEVKEL-VNDMK 720
+ G ++A L+ E++ + + K + +GK +
Sbjct: 207 KQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266
Query: 721 VKGLIPK----ADTYNILVKGYCNLKDFGGAYIWYRE 753
K T L Y F A
Sbjct: 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 808 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.66 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.62 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.61 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.61 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.6 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.58 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.53 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.5 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.5 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.49 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.47 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.47 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.45 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.44 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.42 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.39 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.37 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.37 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.37 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.34 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.32 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.3 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.29 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.29 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.27 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.27 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.23 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.2 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.2 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.2 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.19 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.16 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.16 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.12 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.12 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.1 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.1 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.1 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.08 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.08 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.07 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.06 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.05 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.03 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.03 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.01 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.01 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.01 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.01 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.01 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.99 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.99 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.99 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.98 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.97 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.97 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.96 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.96 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.94 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.91 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.88 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.86 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.86 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.85 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.85 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.82 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.82 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.81 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.8 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.79 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.79 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.78 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.78 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.76 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.75 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.75 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.74 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.74 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.72 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.71 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.69 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.67 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.67 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.66 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.65 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.64 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.64 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.64 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.63 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.63 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.62 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.62 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.62 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.62 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.61 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.6 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.6 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.58 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.58 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.57 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.57 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.56 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.55 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.54 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.52 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.52 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.5 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.49 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.48 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.48 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.47 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.47 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.46 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.45 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.45 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.44 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.44 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.44 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.43 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.42 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.4 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.4 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.4 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.38 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.38 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.37 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.36 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.3 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.29 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.18 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.17 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.17 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.16 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.16 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.13 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.13 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.12 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.08 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.07 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.05 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.03 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.02 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.96 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.92 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.91 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.87 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.86 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.84 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.79 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.66 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.64 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.61 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.57 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.55 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.41 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.34 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.26 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.24 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.2 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.17 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.08 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.99 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.93 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.93 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.83 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.81 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.79 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.71 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.6 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.54 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.21 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.14 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.05 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.81 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.74 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.67 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.97 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.69 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.66 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.32 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.11 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.09 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.9 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.63 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.62 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.05 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.68 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 91.45 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.19 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 91.05 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.36 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.1 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.94 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 88.12 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.02 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 86.83 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.67 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.91 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.83 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 85.55 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.16 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.28 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.79 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 80.94 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 80.14 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-41 Score=376.28 Aligned_cols=523 Identities=11% Similarity=0.036 Sum_probs=378.7
Q ss_pred HHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHH
Q 046719 214 FCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEA 293 (808)
Q Consensus 214 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 293 (808)
+...|....+...+..+. .++...|+.++..|.+.|++++|..+|+++.. ..|+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHH
Confidence 456677777777776654 35888999999999999999999999999985 456778888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046719 294 KSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIEN 373 (808)
Q Consensus 294 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (808)
..+|+.+... .++..+++.++.+|.+.|++++|.++|+++.... . ....+.+.+. ...
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-----~~~~~~~~~~-----------~~~ 194 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR----K-----DEKNANKLLM-----------QDG 194 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-------------------C-----------CCS
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcc----c-----cccccccccc-----------ccc
Confidence 9999988543 5688889999999999999999999888532211 0 0001111111 112
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH--HHH-HHHHHHcCCCCCHH
Q 046719 374 GLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKA--EEW-VKRMLEKGVSPNVK 450 (808)
Q Consensus 374 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A--~~~-~~~~~~~~~~~~~~ 450 (808)
+..++..+|+.++.+|.+.|++++|+++|++|.+.+.. +...+..+...+...+..+.+ ..+ +..+...+..+...
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 273 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence 34456788889999999999999999999998876533 455565555544333222221 111 44444444444556
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHH
Q 046719 451 TNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSC 530 (808)
Q Consensus 451 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 530 (808)
+|+.++..|.+.|++++|.++|+++.+. +++..+++.++..|.+.|++++|..+|+++.+.+.. +..++..++.++.
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLH 350 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHH
Confidence 6777788888899999999999988765 578889999999999999999999999998876533 7778899999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 046719 531 TMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLE 610 (808)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 610 (808)
+.|++++|..+++++.+. .+.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|++
T Consensus 351 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998865 34578888889999999999999999999888742 3357788999999999999999999
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--
Q 046719 611 LYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQ-- 687 (808)
Q Consensus 611 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 687 (808)
+|+++.+.+ +.+..++..++.+|.+.| +++|.+.|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.
T Consensus 429 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 429 AYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp HHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 999888753 446677777777777777 778888887777653 446777778888888888888888888877764
Q ss_pred --CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH
Q 046719 688 --GIRPD--KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSF 763 (808)
Q Consensus 688 --g~~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 763 (808)
+..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..++.+|.+.|++++|.++++++++..|. +.
T Consensus 507 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~ 584 (597)
T 2xpi_A 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EI 584 (597)
T ss_dssp HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-Ch
Confidence 45666 4577778888888888888888887777642 236677777777888888888888888887777666 66
Q ss_pred HHHHHHHHHHH
Q 046719 764 CIYNELTNGLK 774 (808)
Q Consensus 764 ~~~~~l~~~l~ 774 (808)
..+..++.+|.
T Consensus 585 ~~~~~l~~~~~ 595 (597)
T 2xpi_A 585 MASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHHh
Confidence 77766666553
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-40 Score=367.85 Aligned_cols=490 Identities=10% Similarity=-0.006 Sum_probs=256.8
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHH
Q 046719 111 SAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACE 190 (808)
Q Consensus 111 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 190 (808)
..|.+..+...+..+. .++...|+.++..|.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..
T Consensus 65 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3455555555554432 357788999999999999999999999999864 4577889999999999999999999
Q ss_pred HHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCh
Q 046719 191 IFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQR---------------KLVPTRVTYNTLVDGYCKVGEF 255 (808)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~g~~ 255 (808)
+|+++... .++..+++.++.+|.+.|++++|+++|+++... +..++..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99998653 568889999999999999999999999853222 1123455666666666666666
Q ss_pred hHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHH--H-HHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHH
Q 046719 256 EKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKS--V-CKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALY 332 (808)
Q Consensus 256 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 332 (808)
++|..+|++|.+.++. +...+..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 6666666666554321 33344444333322222111111 1 233333222223333444445555555555555555
Q ss_pred HHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 046719 333 EELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAP 412 (808)
Q Consensus 333 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 412 (808)
+++.+. +++..+++.++..|.+.|++++|.++|+++.+.++. +..+|+.++.+|.+.|++++|..+++++.+.. +.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 554443 234445555555555555555555555555444322 44445555555555555555555555554332 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 046719 413 NCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLIN 492 (808)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 492 (808)
+..+++.++..|.+.|++++|.++|+++.+... .+..+|+.++.+|.+.|++++|+++|+++...+ +.+..+|+.++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 444455555555555555555555555444321 134445555555555555555555555544431 234444444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHh
Q 046719 493 WLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR----EMGPT--LVTFNALINGLCK 566 (808)
Q Consensus 493 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~ 566 (808)
.|.+.|++++|..+|+++.+... .+..+|..++..+.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 44444444444444444444321 13444444444444444444444444444433 22333 3444444444444
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 046719 567 KGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKK 617 (808)
Q Consensus 567 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 617 (808)
.|++++|.+.++++.+.+ +.+..+|..++.+|.+.|++++|.+.|+++.+
T Consensus 529 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp TTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 444444444444444332 12344444444444444444444444444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-26 Score=245.99 Aligned_cols=379 Identities=13% Similarity=0.072 Sum_probs=235.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 046719 388 GYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDK 467 (808)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (808)
.+.+.|++++|...++++.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 344445555555555554443211 33344444444555555555555555544432 2244455555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046719 468 CFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVK 547 (808)
Q Consensus 468 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 547 (808)
|...|+++.... +.+..+|..+...+.+.|++++|...|+++.+.++. +...+..+...+...|++++|.+.|+++++
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555554431 223444555555555555555555555555543211 334455555556666666666666666655
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhH
Q 046719 548 REMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTY 627 (808)
Q Consensus 548 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 627 (808)
.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...|..+...+...|++++|+..|++..+.. +.+..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 42 2245566666666666666666666666666532 2234556666666666666666666666666531 2235555
Q ss_pred HHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046719 628 HPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLRE 706 (808)
Q Consensus 628 ~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~ 706 (808)
..+...+...| +++|.+.|+++++.+ +.+...|..++.++.+.|++++|++.|+++++. .+.+..+++.++..+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHc
Confidence 56666666666 666666666666643 334667888888888889999999999888875 344666888888889999
Q ss_pred CCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 707 GKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGK 778 (808)
Q Consensus 707 g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 778 (808)
|++++|...++++.+ ..| +..++..++.++.+.|++++|...++++++..|. +...+..++..+.+.|+
T Consensus 319 g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 319 GNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHHccC
Confidence 999999999988887 345 4677888888899999999999999998887665 77888888888777664
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-26 Score=240.43 Aligned_cols=382 Identities=16% Similarity=0.102 Sum_probs=284.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 350 LLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGE 429 (808)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 429 (808)
+...+.+.|++++|.+.+..+.+..+. +...+..+...+.+.|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 344555667777777777776665433 44556666667777777777777777776653 3366677777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 046719 430 MDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKD 509 (808)
Q Consensus 430 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 509 (808)
+++|+..|+++.+... .+..+|..+...+.+.|++++|.+.|+++.... +.+...+..+...+...|++++|...|++
T Consensus 83 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 7777777777776532 245567777777777777777777777776642 33445566666777777888888888877
Q ss_pred HHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 046719 510 MENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDV 589 (808)
Q Consensus 510 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 589 (808)
+.+... .+..+|..+...+...|++++|+..|+++++.+ +.+...+..+...+...|++++|...+++..... +.+.
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 776532 256677888888888888888888888887753 3356777888888888888888888888877642 2246
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 590 ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCY 668 (808)
Q Consensus 590 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 668 (808)
.++..+...|...|++++|+..|+++.+.. +.+..++..+...+.+.| +++|.+.|+++++.. +.+..+++.++..+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 778888888888888888888888888742 334667778888888888 888888888888764 56788899999999
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCC
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKD 743 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 743 (808)
.+.|++++|++.++++.+. .+.+..++..++.++.+.|++++|...++++++ +.| +...|..++.++...|+
T Consensus 316 ~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999884 233566899999999999999999999999987 556 47778888888777664
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-29 Score=265.20 Aligned_cols=205 Identities=16% Similarity=0.186 Sum_probs=155.8
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCC---------hH
Q 046719 117 EALQLYASTKADGTRLSLD-SINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGD---------LK 186 (808)
Q Consensus 117 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~ 186 (808)
.+..+...+.+.+...++. .++.+|++|++.|++++|+.+|++|.+.|+.||..+||.+|.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3344455555555544443 4778888888888888888888888888888888888888888887654 56
Q ss_pred HHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046719 187 RACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMK 266 (808)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 266 (808)
.|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 046719 267 RDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSK 321 (808)
Q Consensus 267 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 321 (808)
+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 8888888888888888888888888888888888888888888888887777764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=263.60 Aligned_cols=203 Identities=16% Similarity=0.192 Sum_probs=120.3
Q ss_pred HHHHHHHHHcCCCcCH-hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCC---------HhHH
Q 046719 154 LDLFDEIVCMGFRPDK-FTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKK---------IRDA 223 (808)
Q Consensus 154 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A 223 (808)
..+.+++.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. +++|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 3344445444443332 24556666666666666666666666666666666666666666665443 4556
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 224 EKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAH 303 (808)
Q Consensus 224 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 303 (808)
.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHh
Q 046719 304 GFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCK 356 (808)
Q Consensus 304 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 356 (808)
|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..++.
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666555544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-24 Score=237.17 Aligned_cols=233 Identities=12% Similarity=-0.026 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 046719 556 TFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCI 635 (808)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 635 (808)
++..+...+...|++++|...++++.+.. |+...|..+...|...|++++|...++++.+.. +.+...+..+...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHH
Confidence 34444444555555555555555544432 224444444555555555555555555544421 223334444444444
Q ss_pred HcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 046719 636 REG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKE 714 (808)
Q Consensus 636 ~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~ 714 (808)
..| +++|.+.++++++.. +.+...+..++..+...|++++|+..++++.+. .+.+..++..++..+...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 444 555555555554432 223344455555555555555555555555542 11133345555555555555555555
Q ss_pred HHHHHHHCCCCCC-------HHHHHHHHHHHHc---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 046719 715 LVNDMKVKGLIPK-------ADTYNILVKGYCN---LKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQI 784 (808)
Q Consensus 715 ~~~~~~~~g~~p~-------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~ 784 (808)
.++++.+. .|+ ...+..++.++.. .|++++|...++++++..+. +...+..++.++.+.|++++|..
T Consensus 394 ~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 394 QYDLAIEL--ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHH--HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHh--hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHH
Confidence 55555432 111 2245555555555 55555555555555554433 44555555555555555555555
Q ss_pred HHHHHHHcCCCC
Q 046719 785 LCSEISIVGKDA 796 (808)
Q Consensus 785 ~~~~~~~~~~~~ 796 (808)
.++++++..|++
T Consensus 471 ~~~~a~~~~~~~ 482 (514)
T 2gw1_A 471 LFEESADLARTM 482 (514)
T ss_dssp HHHHHHHHCSSH
T ss_pred HHHHHHHhcccc
Confidence 555555555443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-23 Score=230.35 Aligned_cols=276 Identities=11% Similarity=-0.055 Sum_probs=219.9
Q ss_pred HhhHHHHHHHHHh---cCCHHHHHHHHHHHHh-----C--CC------CcchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046719 484 VVSYGSLINWLCK---DCKLLEAEIVLKDMEN-----R--GV------LPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVK 547 (808)
Q Consensus 484 ~~~~~~ll~~~~~---~~~~~~A~~~~~~m~~-----~--~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 547 (808)
...+......+.. .|++++|...|+++.+ . .. +.+..++..+...+...|++++|+..|+++.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444444444443 7888888888888776 2 11 22455778888888999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhH
Q 046719 548 REMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTY 627 (808)
Q Consensus 548 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 627 (808)
... +..++..+...+...|++++|...++++.+.. +.+...|..+...|...|++++|+..|+++.+.. +.+...+
T Consensus 266 ~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 341 (514)
T 2gw1_A 266 LFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPY 341 (514)
T ss_dssp HCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHH
T ss_pred hCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHH
Confidence 643 37788888889999999999999999988753 3356788888889999999999999999998753 3456677
Q ss_pred HHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-------HHHHHHH
Q 046719 628 HPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-------KMTYNSL 699 (808)
Q Consensus 628 ~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-------~~~~~~l 699 (808)
..+...+...| +++|.+.++++++.. +.+...+..++..+...|++++|...++++.+. .|+ ...+..+
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~l 418 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL--ENKLDGIYVGIAPLVGK 418 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTSSSCSSCSHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hhccchHHHHHHHHHHH
Confidence 77888888888 999999999988753 445678888999999999999999999999873 232 2378899
Q ss_pred HHHHHh---cCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 046719 700 IFGHLR---EGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNEL 769 (808)
Q Consensus 700 ~~~~~~---~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 769 (808)
+..+.. .|++++|...++++.+. .| +..++..++.++.+.|++++|...++++++.++. +...+..+
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~ 489 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART-MEEKLQAI 489 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-HHHHHHHH
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc-cHHHHHHH
Confidence 999999 99999999999999884 45 5778899999999999999999999999998765 55555444
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-22 Score=217.43 Aligned_cols=368 Identities=14% Similarity=0.066 Sum_probs=246.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046719 397 RAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEME 476 (808)
Q Consensus 397 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 476 (808)
.+...+....... +.+...+..+...+.+.|++++|+.+|+.+.+.. +.+..++..+...|...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444432 3366778888888888888888888888887753 2367788888888888888888888888887
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcch---hHHHHHHHH------------HHhcCCHHHHHHH
Q 046719 477 NSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNA---QIYNMLIDG------------SCTMGRIKDAFKF 541 (808)
Q Consensus 477 ~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~------------~~~~g~~~~A~~~ 541 (808)
+.+ +.+..++..+...|.+.|++++|...|+++.+.+.. +. ..+..++.. +...|++++|+..
T Consensus 88 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 88 QLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 753 446777888888888888888888888888775322 44 556665443 6667777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 046719 542 FDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIK 621 (808)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 621 (808)
|+++.+.. +.+..++..++..|.+.|++++|...|+++.+.. +.+..+|..++..|...|++++|+..|+++.+. .
T Consensus 166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 241 (450)
T 2y4t_A 166 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--D 241 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 77776642 3356666777777777777777777777766542 234566777777777777777777777776653 3
Q ss_pred cCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-----HHHH
Q 046719 622 PSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-----KMTY 696 (808)
Q Consensus 622 p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-----~~~~ 696 (808)
|+.......+.... ....+..++..+.+.|++++|+..|+++++ +.|+ ...+
T Consensus 242 p~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~ 298 (450)
T 2y4t_A 242 QDHKRCFAHYKQVK---------------------KLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSK 298 (450)
T ss_dssp TTCHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHH
T ss_pred CChHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHH
Confidence 33222211110000 001123346777788888888888888877 3454 2367
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---
Q 046719 697 NSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNG--- 772 (808)
Q Consensus 697 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--- 772 (808)
..++.++.+.|++++|+..++++.+. .| +...|..++.+|...|++++|...++++++..|. +...+..++.+
T Consensus 299 ~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 299 ERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHH
Confidence 77888888888888888888887763 44 5777888888888888888888888888877665 67777777633
Q ss_pred ---------HHhcC-----ChhHHHHHHHH-HHHcCCCCCc
Q 046719 773 ---------LKQEG-----KLKEAQILCSE-ISIVGKDAWT 798 (808)
Q Consensus 773 ---------l~~~g-----~~~~A~~~~~~-~~~~~~~~~~ 798 (808)
|...| +.+++.+.+++ .++..|++++
T Consensus 376 ~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 376 LKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416 (450)
T ss_dssp HHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCC
T ss_pred hhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCC
Confidence 33344 66778888886 7777888776
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-22 Score=223.95 Aligned_cols=234 Identities=13% Similarity=0.002 Sum_probs=115.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHH
Q 046719 557 FNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIR 636 (808)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 636 (808)
+..+...+...|++++|...++++.+. .|+...|..+...+...|++++|+..|+++.+.. +.+..++..+...+..
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence 333444444555555555555555543 2334445555555555555555555555555431 2234444445555555
Q ss_pred cC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 046719 637 EG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKEL 715 (808)
Q Consensus 637 ~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~ 715 (808)
.| +++|.+.++++++.. +.+...+..++.+|...|++++|+..++++.+. .+.+...+..++..+...|++++|...
T Consensus 323 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK-FPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 55 555555555555432 223344555555555555555555555555553 122333555555555555555555555
Q ss_pred HHHHHHCCC-----CCCHHHHHHHHHHHHcc----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 046719 716 VNDMKVKGL-----IPKADTYNILVKGYCNL----------KDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLK 780 (808)
Q Consensus 716 ~~~~~~~g~-----~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 780 (808)
++++.+... ......+..++.++... |++++|...++++++..+. +...+..++.++.+.|+++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~ 479 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKID 479 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHH
Confidence 555543210 00112233334444444 5555555555555555443 4555555555555555555
Q ss_pred HHHHHHHHHHHcCCCC
Q 046719 781 EAQILCSEISIVGKDA 796 (808)
Q Consensus 781 ~A~~~~~~~~~~~~~~ 796 (808)
+|...++++++..|+.
T Consensus 480 ~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 480 EAIELFEDSAILARTM 495 (537)
T ss_dssp HHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHhCCCc
Confidence 5555555555555543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-21 Score=211.92 Aligned_cols=385 Identities=11% Similarity=0.064 Sum_probs=275.0
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046719 361 EIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRM 440 (808)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 440 (808)
..+...+.......+. +...+..++..|.+.|++++|+.+|+++.+... .+..++..+..++...|++++|...++++
T Consensus 9 ~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMA-DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp --------------CH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555555554332 677899999999999999999999999998643 37889999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---hhHHHHHHH------------HHhcCCHHHHHH
Q 046719 441 LEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNV---VSYGSLINW------------LCKDCKLLEAEI 505 (808)
Q Consensus 441 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~------------~~~~~~~~~A~~ 505 (808)
.+.+.. +..++..+...|.+.|++++|...|+++.... +.+. ..+..++.. +...|++++|..
T Consensus 87 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 87 IQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 987533 68889999999999999999999999998753 3344 677776444 889999999999
Q ss_pred HHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 046719 506 VLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGL 585 (808)
Q Consensus 506 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 585 (808)
.|+++.+... .+..++..++.++...|++++|+..|+++.+.. +.+..++..++..|...|++++|...|+++...
T Consensus 165 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 240 (450)
T 2y4t_A 165 FLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-- 240 (450)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 9999988643 378889999999999999999999999998863 457899999999999999999999999999874
Q ss_pred CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCC-----H
Q 046719 586 NPD-VITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPD-----L 658 (808)
Q Consensus 586 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~-----~ 658 (808)
.|+ ...+..+... . .......+...+...| +++|.+.|+++++.. |+ .
T Consensus 241 ~p~~~~~~~~~~~~--------------~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~ 295 (450)
T 2y4t_A 241 DQDHKRCFAHYKQV--------------K---------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTV 295 (450)
T ss_dssp CTTCHHHHHHHHHH--------------H---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHH
T ss_pred CCChHHHHHHHHHH--------------H---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHH
Confidence 344 3334333100 0 0011122344445555 555555555555532 22 3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVK 736 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~ 736 (808)
..+..++.++.+.|++++|+..++++.+. .| +..+|..++.+|...|++++|...++++++ +.|+ ...+..+..
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEK 371 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 46677777888888888888888887773 34 456778888888888888888888888877 4553 555555553
Q ss_pred H------------HHccC-----ChhHHHHHHHH-HHHCCCC--CCH-------HHHHHHHHHHHhcCChhHH
Q 046719 737 G------------YCNLK-----DFGGAYIWYRE-MFENGFI--PSF-------CIYNELTNGLKQEGKLKEA 782 (808)
Q Consensus 737 ~------------~~~~g-----~~~~A~~~~~~-~~~~~~~--~~~-------~~~~~l~~~l~~~g~~~~A 782 (808)
+ |...| +.+++.+.|++ +++..|+ |+. ..+..+..+|...|+.+++
T Consensus 372 ~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 372 AQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 2 33444 66788888887 5555433 121 2445555666655555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-21 Score=212.96 Aligned_cols=441 Identities=11% Similarity=0.035 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHH
Q 046719 134 LDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISG 213 (808)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 213 (808)
...+..++..+.+.|++++|+..|+++++..+. +..+|..+..++.+.|++++|+..|+++++.++ .+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 345666777777777777777777777766544 666777777777777777777777777766543 256666777777
Q ss_pred HHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--cCHHHHHHHHHHHHccCChh
Q 046719 214 FCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVE--VSLVMFNSLLGGFCKAKRME 291 (808)
Q Consensus 214 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~ 291 (808)
+...|++++|...|+ .... .|+ .....+..+...+....|...++.+....+. +........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 777777777777775 3222 122 1122233444555556666666666442110 00001122223333344444
Q ss_pred HHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhC--------CChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHH
Q 046719 292 EAKSVCKEMEAHGFDPDGF-TYSMLFDGYSKC--------GDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEI 362 (808)
Q Consensus 292 ~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 362 (808)
.+...+...... .+... ....+...+... |++++|..+|+++.+.... +...+..+
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~------------ 242 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENA------------ 242 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHH------------
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHH------------
Confidence 433333222111 11111 122222222111 2344444444444433211 10000000
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046719 363 AEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLE 442 (808)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 442 (808)
..++..+...+...|++++|...++++.+.. |+..++..+...+...|++++|...++++.+
T Consensus 243 ----------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 304 (537)
T 3fp2_A 243 ----------------ALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVD 304 (537)
T ss_dssp ----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 1123334444445555555555555555432 2344444555555555555555555555544
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHH
Q 046719 443 KGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIY 522 (808)
Q Consensus 443 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 522 (808)
.... +..++..+...+...|++++|...+++..... +.+...+..+...+...|++++|...|+++.+.. +.+...+
T Consensus 305 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 381 (537)
T 3fp2_A 305 LNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVP 381 (537)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHH
T ss_pred cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 3221 34445555555555555555555555554432 2234445555555555555555555555555442 2234455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCCC
Q 046719 523 NMLIDGSCTMGRIKDAFKFFDEMVKRE-----MGPTLVTFNALINGLCKK----------GRVMEAEDMLPQITSSGLNP 587 (808)
Q Consensus 523 ~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~ 587 (808)
..+...+...|++++|+..|+++++.. .......+..+...+... |++++|...|+++.+.. +.
T Consensus 382 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~ 460 (537)
T 3fp2_A 382 TFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PR 460 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CC
Confidence 555555555666666666655554421 111222233444445555 66666666666666532 22
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 046719 588 DVITYNSLISGYSSLGSSQKCLELYENMKKL 618 (808)
Q Consensus 588 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 618 (808)
+...|..+...|...|++++|.+.|++..+.
T Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4455666666666666666666666666653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-16 Score=180.55 Aligned_cols=597 Identities=11% Similarity=0.130 Sum_probs=394.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhc
Q 046719 103 NILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKI 182 (808)
Q Consensus 103 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (808)
+-|+...-+.+++.--+.+++.....|. .+..++|+|+..|...++-.+.+ +.. |.+-=..++.-||..
T Consensus 843 ~~lv~~~ekrnrLkll~p~LE~~~~~g~-~~~~~hnalakiyid~n~npe~f------L~~----n~~yd~~~vgkyce~ 911 (1630)
T 1xi4_A 843 DELVAEVEKRNRLKLLLPWLEARIHEGC-EEPATHNALAKIYIDSNNNPERF------LRE----NPYYDSRVVGKYCEK 911 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhccCCCHHHH------hhc----cCcccHHHHHHHHHh
Confidence 4566667777777777888888888874 58889999999999776543321 111 111112233344444
Q ss_pred CChHHHHHHHHH-----------------------hhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHh----CCC
Q 046719 183 GDLKRACEIFDG-----------------------MEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQ----RKL 235 (808)
Q Consensus 183 g~~~~A~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~ 235 (808)
.|+..|.-.|++ +++ +.|...|..++. ..+.. =.++.+.... ...
T Consensus 912 rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~---r~d~~lW~~vl~---~~n~~--RR~Lidqv~a~aL~e~~ 983 (1630)
T 1xi4_A 912 RDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVR---RKDPELWGSVLL---ESNPY--RRPLIDQVVQTALSETQ 983 (1630)
T ss_pred cCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHH---hcCHHHHHHHhc---CCcHH--HHHHHHHHHHhhccccc
Confidence 444444444432 011 113334444331 11111 1122222111 222
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHH
Q 046719 236 VPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKV--EVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYS 313 (808)
Q Consensus 236 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 313 (808)
.|+. -...+..|...|.+.+|.+++++....+- .-+...-+.++.+..+. +..+..++..+.... ...
T Consensus 984 ~Pee--Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~ 1053 (1630)
T 1xi4_A 984 DPEE--VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAP 1053 (1630)
T ss_pred CHHH--hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHH
Confidence 3443 45677888899999999999999984321 12345556677666665 556666666555422 234
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 046719 314 MLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTG 393 (808)
Q Consensus 314 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 393 (808)
.+...+...|.+++|..+|++... .....+.+ +-..|++++|.++.++.. +..+|..+..++.+.|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCC
Confidence 477888899999999999999631 12222223 227789999999988652 5778999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 046719 394 DLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILE 473 (808)
Q Consensus 394 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 473 (808)
++++|++.|.+. -|...|..++..+.+.|++++|.+.+....+.. ++....+.++.+|++.+++++.....
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 999999999764 378889999999999999999999999888764 33333445889999999988544332
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 046719 474 EMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPT 553 (808)
Q Consensus 474 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 553 (808)
. .++...|..+...|...|++++|..+|... ..|..+...+++.|++++|++.+++. .+
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n 1249 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NS 1249 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CC
Confidence 2 356677778999999999999999999885 37899999999999999999999877 26
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 046719 554 LVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSG 633 (808)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 633 (808)
..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++...... +-....|+-+...
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiL 1323 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHH
Confidence 7899999999999999999988776533 356667799999999999999999998887532 2334556667777
Q ss_pred HHHcC---HHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHccCCHHHHHHH-------------HHHHHHCCCCC
Q 046719 634 CIREG---IVAVEKLFNEMLQINLVP------DLLVYNALIHCYAEHGDVQKALVL-------------HSEMVDQGIRP 691 (808)
Q Consensus 634 ~~~~~---~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~~~~~g~~p 691 (808)
+++.. +.++.++|..-.. +++ +...|..++-.|.+.|+++.|... |+..+.+ ..
T Consensus 1324 yaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~ 1399 (1630)
T 1xi4_A 1324 YSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VA 1399 (1630)
T ss_pred HHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cc
Confidence 77766 5666666664433 333 457899999999999999999832 2332221 23
Q ss_pred CHHHHHHHHHHHHhcC---------------CHhHHHHHHHH-------------HHHCCCCCCHHHHHHHHHHHHccCC
Q 046719 692 DKMTYNSLIFGHLREG---------------KLSEVKELVND-------------MKVKGLIPKADTYNILVKGYCNLKD 743 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g---------------~~~~A~~~~~~-------------~~~~g~~p~~~~~~~l~~~~~~~g~ 743 (808)
|...|...+..|...+ +.+++.+++.+ ... ..+...-..+...+....|
T Consensus 1400 n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~---~n~~~Vneal~el~ieeed 1476 (1630)
T 1xi4_A 1400 NVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN---HNNKSVNESLNNLFITEED 1476 (1630)
T ss_pred cHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHH---hcchhhhHHHHHHhcCccc
Confidence 5556666666666555 56666666552 111 1122222345555555555
Q ss_pred hhHHHH------------HHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHH
Q 046719 744 FGGAYI------------WYREMFENGFIPSFCIYNELTNGLKQE-GKLKEAQILCSEI 789 (808)
Q Consensus 744 ~~~A~~------------~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~A~~~~~~~ 789 (808)
++.-.. +.+++.++ +..-+..++..+.+. |+|+.|.+++.+.
T Consensus 1477 ~~~Lr~si~~~~nfd~~~La~~lekh----eLl~frrIAa~ly~~n~~~~~ai~l~k~d 1531 (1630)
T 1xi4_A 1477 YQALRTSIDAYDNFDNISLAQRLEKH----ELIEFRRIAAYLFKGNNRWKQSVELCKKD 1531 (1630)
T ss_pred hHHHHHHHhhccCcCHHHHHHHhhhh----hHHHHHHHHHHHHHhcCcHHHHHHHHHhc
Confidence 442222 22222111 222334555554444 9999998887654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-19 Score=185.15 Aligned_cols=318 Identities=10% Similarity=0.013 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHH
Q 046719 449 VKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDG 528 (808)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 528 (808)
...+..+...+...|++++|...|+++.... +.+..++..+...+...|++++|...|+++.+.... +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 4455666666667777777777777666542 345566666666666666666666666666654222 44556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHH
Q 046719 529 SCTMGRIKDAFKFFDEMVKREMG--PTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQ 606 (808)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 606 (808)
+...|++++|+..|+++.+.... .+...+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 66666666666666666654210 12333333310000 001112234555566666
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 046719 607 KCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMV 685 (808)
Q Consensus 607 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 685 (808)
+|+..++++.+.. +.+...+..+...+...| +++|.+.++++++.. +.+...+..++..+...|++++|...++++.
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666655432 233445555555555555 666666666665542 3445566666666666677777777776666
Q ss_pred HCCCCCC-HHHHH------------HHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHccCChhHH
Q 046719 686 DQGIRPD-KMTYN------------SLIFGHLREGKLSEVKELVNDMKVKGLIPK-A----DTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 686 ~~g~~pd-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~----~~~~~l~~~~~~~g~~~~A 747 (808)
+. .|+ ...+. .++..+...|++++|...++++.+. .|+ . ..+..++.++.+.|++++|
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 63 332 22222 2355667777777777777776663 343 2 2244566677777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 748 YIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+..++++++..+. +...+..++.++...|++++|...++++++..|++..
T Consensus 292 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 292 IRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 7777777776544 6667777777777777777777777777777666544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-15 Score=172.38 Aligned_cols=378 Identities=14% Similarity=0.147 Sum_probs=203.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 046719 137 INVLLECLVRCNQYDRALDLFDEIVCMGF--RPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGF 214 (808)
Q Consensus 137 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (808)
....+++|...|.+.+|+.+++++...+. .-+....+.++.+..+. +..+..++..+.... ...-+...+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHH
Confidence 34455556666666666666666553211 12334444455544444 334444444433211 122344555
Q ss_pred HccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHH
Q 046719 215 CKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAK 294 (808)
Q Consensus 215 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 294 (808)
...|.+++|..+|++.. -.....+.++. ..|++++|.++.++. .+..+|..+..++...|++++|+
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 56666666666666642 12222223322 456666666666654 23456666666666666666666
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 046719 295 SVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENG 374 (808)
Q Consensus 295 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 374 (808)
..|.+. -|...|..++..+.+.|++++|.+.|....+.. +++...+.++.+|++.+++++..... +
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-- 1191 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-- 1191 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h--
Confidence 666432 245556666666666666666666666655543 22222334666666666666433322 1
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 046719 375 LVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNT 454 (808)
Q Consensus 375 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 454 (808)
.++...|..+...|...|++++|...|... ..|..+...+++.|++++|.+.+++.. +..+|..
T Consensus 1192 -~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWke 1255 (1630)
T 1xi4_A 1192 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKE 1255 (1630)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHH
Confidence 234445555666666666666666666663 256666666666666666666666552 4566666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHh--c
Q 046719 455 LIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCT--M 532 (808)
Q Consensus 455 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~ 532 (808)
+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++...... +-....|+-+...+++ -
T Consensus 1256 v~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCH
Confidence 66666666666666654433 22345555566666666666666666666655432 2233345555555444 2
Q ss_pred CCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCChHHHH
Q 046719 533 GRIKDAFKFFDEMVKREMGP------TLVTFNALINGLCKKGRVMEAE 574 (808)
Q Consensus 533 g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~ 574 (808)
++..++.++|..-.. +++ +...|..++-.|.+.|+++.|.
T Consensus 1330 eklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 344444444443221 111 3455666666666666666665
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.9e-19 Score=182.39 Aligned_cols=331 Identities=13% Similarity=0.057 Sum_probs=249.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 046719 413 NCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLIN 492 (808)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 492 (808)
+...+..+...+...|++++|...++++.+.... +..++..+...+...|++++|...++++.... +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 5667888999999999999999999999987433 68889999999999999999999999998763 457788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC--cchhHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 046719 493 WLCKDCKLLEAEIVLKDMENRGVL--PNAQIYNML------------IDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFN 558 (808)
Q Consensus 493 ~~~~~~~~~~A~~~~~~m~~~~~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 558 (808)
.+...|++++|...|+++.+.... .+...+..+ ...+...|++++|+..++++.+.. +.+..++.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999999886430 244455554 466667777777777777777653 33566677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHHc
Q 046719 559 ALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS-LRTYHPLLSGCIRE 637 (808)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 637 (808)
.+...+...|++++|...++++.+.. +.+...|..+...+...|++++|...|++..+. .|+ ...+..+
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~------- 228 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHY------- 228 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHH-------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHH-------
Confidence 77777777777777777777777643 335566777777777777777777777777653 222 2211111
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCCHhHH
Q 046719 638 GIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-----TYNSLIFGHLREGKLSEV 712 (808)
Q Consensus 638 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-----~~~~l~~~~~~~g~~~~A 712 (808)
..+. .......++..+.+.|++++|+..++++.+. .|+.. .+..++.++...|++++|
T Consensus 229 ---------~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 229 ---------KQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp ---------HHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------HHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 0000 1112234467788999999999999999984 34432 355688999999999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046719 713 KELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQE 776 (808)
Q Consensus 713 ~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 776 (808)
...++++.+. .| +..++..++.++...|++++|...++++++..|. +...+..+..+....
T Consensus 292 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 292 IRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHH
Confidence 9999999884 45 6888999999999999999999999999988766 677777776665443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-17 Score=178.26 Aligned_cols=383 Identities=14% Similarity=0.065 Sum_probs=263.1
Q ss_pred CHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCH
Q 046719 378 DEVMFNTIVSGYCR----TGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCE----LGEMDKAEEWVKRMLEKGVSPNV 449 (808)
Q Consensus 378 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 449 (808)
+...+..+...|.. .+++++|+..|++..+.| +...+..|...|.. .++.++|..+|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44455555555555 566666776666666553 45556666666666 666777777777666653 45
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCcchhH
Q 046719 450 KTNNTLIDGYGR----MGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCK----DCKLLEAEIVLKDMENRGVLPNAQI 521 (808)
Q Consensus 450 ~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~ 521 (808)
..+..|...|.. .+++++|+..|++..+.| +...+..+...|.. .++.++|...|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 555566666666 567777777777766654 45556666666665 567777777777776653 5566
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHH
Q 046719 522 YNMLIDGSCT----MGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCK----KGRVMEAEDMLPQITSSGLNPDVITYN 593 (808)
Q Consensus 522 ~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 593 (808)
+..+...|.. .+++++|+.+|++..+.+ +...+..+...|.. .+++++|..+|++..+.| +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6666666666 677777777777777654 45666666666665 677788888887777653 455666
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHc-----C-HHHHHHHHHHHHHCCCCCCHHHHHH
Q 046719 594 SLISGYSS----LGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIRE-----G-IVAVEKLFNEMLQINLVPDLLVYNA 663 (808)
Q Consensus 594 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~-~~~a~~~~~~~~~~~~~~~~~~~~~ 663 (808)
.+...|.. .+++++|+..|++..+.+ +...+..+...+... + .++|.+.|++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 66666666 777888888888877643 344555666666665 5 888888888888754 3456677
Q ss_pred HHHHHHccC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 664 LIHCYAEHG---DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLR----EGKLSEVKELVNDMKVKGLIPKADTYNILVK 736 (808)
Q Consensus 664 l~~~~~~~g---~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 736 (808)
+...|...| ++++|++.|++..+.| +...+..|+..|.. .+++++|..+++++.+.| ++..+..++.
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777666 7899999999998864 66778889988888 889999999999988854 5778888888
Q ss_pred HHHc----cCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 737 GYCN----LKDFGGAYIWYREMFENGFI-P-SFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 737 ~~~~----~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
.|.. .+++++|..+|+++.+.++. | +......++.++.. +.++|.+...+..++
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~ 467 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEK 467 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHH
Confidence 8887 89999999999999988754 2 45555566555443 334444444444444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.2e-17 Score=174.77 Aligned_cols=364 Identities=14% Similarity=0.086 Sum_probs=309.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHH
Q 046719 399 MLAIQQMENHGLAPNCITFNTLIDKFCE----LGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGR----MGHFDKCFQ 470 (808)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~ 470 (808)
...++...+.| +...+..+...|.. .+++++|..++++..+.| +...+..|...|.. .+++++|..
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44455554543 67777788888887 899999999999998874 67788889999998 899999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHh----cCCHHHHHHHH
Q 046719 471 ILEEMENSGMKPNVVSYGSLINWLCK----DCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCT----MGRIKDAFKFF 542 (808)
Q Consensus 471 ~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~ 542 (808)
.|++..+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|++.|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999998865 67778888888888 889999999999998875 56778888888887 78999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHH
Q 046719 543 DEMVKREMGPTLVTFNALINGLCK----KGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSS----LGSSQKCLELYEN 614 (808)
Q Consensus 543 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 614 (808)
++..+.+ +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|...|++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9999874 67888889999988 899999999999999864 66778888888876 8899999999999
Q ss_pred HHHCCCCcCHHhHHHHHHHHHH----cC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHH
Q 046719 615 MKKLGIKPSLRTYHPLLSGCIR----EG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEH-----GDVQKALVLHSEM 684 (808)
Q Consensus 615 ~~~~~~~p~~~~~~~l~~~~~~----~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~ 684 (808)
..+.+ +...+..+...+.. .+ .++|.+.|++..+.+ +...+..+...|... +++++|+..|++.
T Consensus 249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 98754 45566666666666 56 999999999998764 455777788888877 8999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHC
Q 046719 685 VDQGIRPDKMTYNSLIFGHLREG---KLSEVKELVNDMKVKGLIPKADTYNILVKGYCN----LKDFGGAYIWYREMFEN 757 (808)
Q Consensus 685 ~~~g~~pd~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 757 (808)
.+.| +...+..|+..|...| ++++|++++++..+. .++..+..++..|.. .+++++|+.+|+++.+.
T Consensus 323 ~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 323 AEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 9965 5567888999998867 789999999999985 367889999999998 89999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC
Q 046719 758 GFIPSFCIYNELTNGLKQ----EGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 758 ~~~~~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~~~~ 795 (808)
+ ++..+..|+.+|.. .++.++|..+++++.+.+++
T Consensus 397 ~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 397 G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 5 57889999999998 89999999999999998854
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-18 Score=176.63 Aligned_cols=292 Identities=13% Similarity=0.040 Sum_probs=209.0
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 046719 481 KPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNAL 560 (808)
Q Consensus 481 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 560 (808)
+.+...+..+...+...|++++|..+|+++.+... .+...+..++..+...|++++|..+++++++.. +.+..++..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 44555666666666677777777777777666532 245556666667777777777777777777653 3356667777
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-
Q 046719 561 INGLCKKG-RVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG- 638 (808)
Q Consensus 561 ~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~- 638 (808)
...+...| ++++|...|+++.+.. +.+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 77777777 7777777777777643 2245667777777777777777777777777642 233455555666677777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHh
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQG--------IRPDKMTYNSLIFGHLREGKLS 710 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--------~~pd~~~~~~l~~~~~~~g~~~ 710 (808)
+++|.+.++++++.. +.+...+..++..+...|++++|...++++.+.. .+.+..++..++.++...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 777777777777653 4456788888888889999999999998888631 0223457888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCh
Q 046719 711 EVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGL-KQEGKL 779 (808)
Q Consensus 711 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~ 779 (808)
+|...++++.+.. +.+...+..++.++.+.|++++|..+++++++..+. +...+..++.++ ...|+.
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCch
Confidence 9999999988742 235778888899999999999999999999887766 788888888888 455553
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=7.8e-17 Score=177.29 Aligned_cols=431 Identities=10% Similarity=0.030 Sum_probs=274.0
Q ss_pred HHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 046719 332 YEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLA 411 (808)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 411 (808)
+++.++.. +-+...|..++. +.+.|+++.|..+|+++++..+. +...|..++..+.+.|++++|..+|+++....
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 34444432 335667777777 46778888888888888876433 66678888888888888888888888887753
Q ss_pred CCHHHHHHHHHHH-HhcCCHHHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHH
Q 046719 412 PNCITFNTLIDKF-CELGEMDKAEE----WVKRMLEK-GVSP-NVKTNNTLIDGYGR---------MGHFDKCFQILEEM 475 (808)
Q Consensus 412 ~~~~~~~~li~~~-~~~g~~~~A~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~m 475 (808)
|+...|...+... ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 4666676666433 34566666554 66665543 4333 45566666665544 57777888888777
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHH------HHcC
Q 046719 476 ENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEM------VKRE 549 (808)
Q Consensus 476 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~ 549 (808)
...........|..........+. .+...++. ...++++.|..++... .+..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 662111111222222211100000 00001110 1234455565555542 2111
Q ss_pred ---CCCC--------HHHHHHHHHHHHhc----CCh----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-------CC
Q 046719 550 ---MGPT--------LVTFNALINGLCKK----GRV----MEAEDMLPQITSSGLNPDVITYNSLISGYSS-------LG 603 (808)
Q Consensus 550 ---~~~~--------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g 603 (808)
++|+ ...|...+...... ++. +.+..+|++.+... +.+...|..++..+.+ .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 2332 23444444333221 122 36667787777642 3356777777777664 67
Q ss_pred CHH-------HHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHccCC
Q 046719 604 SSQ-------KCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPD-L-LVYNALIHCYAEHGD 673 (808)
Q Consensus 604 ~~~-------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~ 673 (808)
+++ +|..+|++..+.-.+.+...+..++..+.+.| +++|.++|+++++. .|+ . ..|..++..+.+.|+
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcC
Confidence 776 78888888875222334667777777777788 88888888888874 343 2 478888888888899
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHH
Q 046719 674 VQKALVLHSEMVDQGIRPD-KMTYNSLIFG-HLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIW 750 (808)
Q Consensus 674 ~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 750 (808)
+++|.++|++.++. .|+ ...|...+.. +...|+.++|..+|+++++. .| +...|..++..+.+.|+.++|..+
T Consensus 372 ~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 372 IKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 99999999999874 343 3334333333 33588899999999998873 45 578888888888889999999999
Q ss_pred HHHHHHCCCC-C--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 046719 751 YREMFENGFI-P--SFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDA 796 (808)
Q Consensus 751 ~~~~~~~~~~-~--~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 796 (808)
|+++++.++. | ....|...+......|+.+.+.++.+++.+.-|++
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 9999887543 2 23477777888888899999999999888877643
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=4e-18 Score=175.49 Aligned_cols=278 Identities=11% Similarity=0.015 Sum_probs=239.0
Q ss_pred CCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 046719 515 VLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNS 594 (808)
Q Consensus 515 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 594 (808)
.+.+...+..++..+...|++++|+.+|+++++.. +.+...+..++..+...|++++|...++++.+.. +.+...|..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 34467778889999999999999999999999864 3356677778888999999999999999999853 336788999
Q ss_pred HHHHHHcCC-CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 046719 595 LISGYSSLG-SSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHG 672 (808)
Q Consensus 595 l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 672 (808)
+...+...| ++++|...|+++.+.. +.+...+..+...+...| +++|.+.++++++.. +.+...+..++..|...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 999999999 9999999999999753 345777888889999999 999999999999864 334566777999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHccCCh
Q 046719 673 DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKG--------LIPKADTYNILVKGYCNLKDF 744 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--------~~p~~~~~~~l~~~~~~~g~~ 744 (808)
++++|.+.++++.+. .+.+...+..++..+...|++++|...++++.+.. ......++..++.++...|++
T Consensus 174 ~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999999985 23356689999999999999999999999987631 123467899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 745 GGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 745 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
++|...++++++..+. +...+..++.++...|++++|...++++++..|++..
T Consensus 253 ~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 305 (330)
T 3hym_B 253 AEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305 (330)
T ss_dssp HHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH
T ss_pred HHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH
Confidence 9999999999998776 7899999999999999999999999999999888765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-16 Score=174.85 Aligned_cols=428 Identities=12% Similarity=0.087 Sum_probs=248.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHH
Q 046719 131 RLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVL 210 (808)
Q Consensus 131 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 210 (808)
|.+..+|..++. +.+.|+++.|+.+|+++++..+. +...|...+..+.+.|++++|..+|+++++.. |+...|...
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 446777888887 46778888888888888776444 67778888888888888888888888887753 566666666
Q ss_pred HHHH-HccCCHhHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCcCH
Q 046719 211 ISGF-CKEKKIRDAEK----LFDEMCQ-RKLVP-TRVTYNTLVDGYCK---------VGEFEKVSALRERMKRDKVEVSL 274 (808)
Q Consensus 211 ~~~~-~~~g~~~~A~~----~~~~m~~-~~~~p-~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~ 274 (808)
+... ...|++++|.+ +|++... .|..| +...|...+....+ .|+++.|..+|++..+.......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 6433 34566666654 6665543 24332 45566666665544 56666666666666552111111
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHH
Q 046719 275 VMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNAL 354 (808)
Q Consensus 275 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 354 (808)
..|..........|. .+...++. ...+++..|..+++++...
T Consensus 166 ~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~---------------- 207 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETV---------------- 207 (530)
T ss_dssp HHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHH----------------
Confidence 222211110000000 00000000 0122334444444331100
Q ss_pred HhcCChHHHHHHHHHHHHCC---CCCC--------HhhHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHH
Q 046719 355 CKEGKVEIAEEIVGKEIENG---LVPD--------EVMFNTIVSGYCRT----GDL----NRAMLAIQQMENHGLAPNCI 415 (808)
Q Consensus 355 ~~~g~~~~a~~~~~~~~~~~---~~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~ 415 (808)
....+.. +.|+ ...|...+...... ++. ..+..+|++..... +-+..
T Consensus 208 -------------~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~ 273 (530)
T 2ooe_A 208 -------------MKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPD 273 (530)
T ss_dssp -------------HHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHH
T ss_pred -------------HHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHH
Confidence 0000100 1111 12333333222211 121 35566666666542 22566
Q ss_pred HHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 046719 416 TFNTLIDKFCE-------LGEMD-------KAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMK 481 (808)
Q Consensus 416 ~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 481 (808)
.|..++..+.+ .|+++ +|+.++++.++.-.+.+...|..++..+.+.|++++|..+|+++... .
T Consensus 274 ~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~ 351 (530)
T 2ooe_A 274 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--E 351 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--S
T ss_pred HHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--c
Confidence 66666666654 56665 77777777765212234667777777777777777777777777764 3
Q ss_pred CC-H-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 046719 482 PN-V-VSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDG-SCTMGRIKDAFKFFDEMVKREMGPTLVTFN 558 (808)
Q Consensus 482 ~~-~-~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 558 (808)
|+ . ..|..++..+.+.|++++|..+|++..+.. +.+...|...+.. +...|++++|..+|+..++.. +.+...|.
T Consensus 352 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~ 429 (530)
T 2ooe_A 352 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVL 429 (530)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHH
Confidence 43 2 467777777777777788888887777652 1123333322222 235788888888888887752 34677788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC-CCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 046719 559 ALINGLCKKGRVMEAEDMLPQITSSGL-NPD--VITYNSLISGYSSLGSSQKCLELYENMKKL 618 (808)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 618 (808)
.++..+.+.|+.++|..+|++.+..+. .|+ ...|...+......|+.+.+..+++++.+.
T Consensus 430 ~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 430 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888888888877532 222 346777777777788888888888887764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-18 Score=177.43 Aligned_cols=264 Identities=14% Similarity=0.091 Sum_probs=184.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046719 521 IYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYS 600 (808)
Q Consensus 521 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 600 (808)
.+..+...+...|++++|+..|+++++.. +.+..++..+...+...|++++|...|+++.+.. +.+..++..+...|.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34455555555555555555555555442 2244455555555555555555555555555432 224445555555555
Q ss_pred cCCCHHHHHHHHHHHHHCCCCcCHHhHHH---------------HHHHHHHcC-HHHHHHHHHHHHHCCCCC-CHHHHHH
Q 046719 601 SLGSSQKCLELYENMKKLGIKPSLRTYHP---------------LLSGCIREG-IVAVEKLFNEMLQINLVP-DLLVYNA 663 (808)
Q Consensus 601 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~---------------l~~~~~~~~-~~~a~~~~~~~~~~~~~~-~~~~~~~ 663 (808)
..|++++|+..++++.+.. +.+...+.. .+..+...| +++|.+.++++++..... +..++..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 5555555555555555432 111111110 223333667 999999999998864221 5788999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcc
Q 046719 664 LIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNL 741 (808)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~ 741 (808)
++..|...|++++|+..++++++. .| +..++..++..+...|++++|+..++++++. .| +...+..++.++.+.
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHC
Confidence 999999999999999999999984 44 5668999999999999999999999999884 45 578899999999999
Q ss_pred CChhHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046719 742 KDFGGAYIWYREMFENGFIP----------SFCIYNELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 742 g~~~~A~~~~~~~~~~~~~~----------~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
|++++|...++++++..+.. ....|..++.++...|++++|..++++.+.
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 99999999999999875542 178999999999999999999998875543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-16 Score=168.90 Aligned_cols=388 Identities=9% Similarity=-0.081 Sum_probs=237.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C
Q 046719 378 DEVMFNTIVSGYCRTGDLNRAMLAIQQMENH--------GLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEK-----G 444 (808)
Q Consensus 378 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~ 444 (808)
....||.+...+...|+.++|++.|++..+. ..+....+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456888888888899999999988887542 11224567888888888888888888888876542 1
Q ss_pred -CC-CCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCCCHhhHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCc
Q 046719 445 -VS-PNVKTNNTLIDGYGRM--GHFDKCFQILEEMENSGMKPNVVSYGSLINW---LCKDCKLLEAEIVLKDMENRGVLP 517 (808)
Q Consensus 445 -~~-~~~~~~~~l~~~~~~~--g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~---~~~~~~~~~A~~~~~~m~~~~~~~ 517 (808)
.. ....++..+..++.+. +++++|+..|++..+.. +.+...+..+... +...++.++|+..+++..+.+..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 01 1244555555555443 46788888888877642 3344455444443 33456677777777777665322
Q ss_pred chhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 046719 518 NAQIYNMLIDGSCT----MGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYN 593 (808)
Q Consensus 518 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 593 (808)
+..++..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 44555555444433 456677788887777653 3356677777778888888888888888777642 22445566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 046719 594 SLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHG 672 (808)
Q Consensus 594 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 672 (808)
.+...|...+... .... ...........+ .+.|...+++..+.+ +.+...+..+...|...|
T Consensus 286 ~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 5655553211110 0000 000000111122 667888888888754 445567888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHH
Q 046719 673 DVQKALVLHSEMVDQGIRPDKM--TYNSLIF-GHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYI 749 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 749 (808)
++++|++.|+++++....|... .+..++. .+...|++++|+..++++++ +.|+...... ..+.+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHHHHH
Confidence 9999999999999853332221 2334443 34578999999999999998 6676543322 2344566
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 750 WYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
++++.++.+|. ++.++..|+.+|...|++++|+..++++++.++.+++
T Consensus 418 ~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 418 IAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HHHHHHHHCC--CTTHHHHHHHHHHHHHHCC------------------
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 77888887776 8899999999999999999999999999998877654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-17 Score=172.42 Aligned_cols=287 Identities=10% Similarity=-0.008 Sum_probs=209.5
Q ss_pred hcCChHHHHH-HHHHHHHCCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHH
Q 046719 461 RMGHFDKCFQ-ILEEMENSGM---KPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIK 536 (808)
Q Consensus 461 ~~g~~~~a~~-~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 536 (808)
-.|++++|.. .+++...... ..+...+..+...+.+.|++++|...|+++.+... .+..++..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHH
Confidence 3466777776 6665443210 11245566777777777888888888877777633 35667777777888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHc
Q 046719 537 DAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNS---------------LISGYSS 601 (808)
Q Consensus 537 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~ 601 (808)
+|+..|+++++.. +.+..++..+...+...|++++|...++++...... +...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 8888888777753 336777777778888888888888888887765321 2222211 1333348
Q ss_pred CCCHHHHHHHHHHHHHCCCC-cCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 046719 602 LGSSQKCLELYENMKKLGIK-PSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALV 679 (808)
Q Consensus 602 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 679 (808)
.|++++|...|+++.+.... ++..++..+...+...| +++|.+.++++++.. +.+...+..++..+...|++++|+.
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999999999999875311 14778888888899999 999999999998864 4567889999999999999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-C-----------HHHHHHHHHHHHccCChhH
Q 046719 680 LHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-K-----------ADTYNILVKGYCNLKDFGG 746 (808)
Q Consensus 680 ~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~-----------~~~~~~l~~~~~~~g~~~~ 746 (808)
.|+++++. .| +...+..++.++...|++++|...++++.+. .| + ..+|..++.++...|++++
T Consensus 273 ~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 273 AYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 99999984 44 5668999999999999999999999998763 23 2 6789999999999999999
Q ss_pred HHHHHHHHH
Q 046719 747 AYIWYREMF 755 (808)
Q Consensus 747 A~~~~~~~~ 755 (808)
|..++++.+
T Consensus 349 A~~~~~~~l 357 (368)
T 1fch_A 349 YGAADARDL 357 (368)
T ss_dssp HHHHHTTCH
T ss_pred HHHhHHHHH
Confidence 999887654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.4e-17 Score=170.31 Aligned_cols=264 Identities=13% Similarity=0.010 Sum_probs=189.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046719 519 AQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISG 598 (808)
Q Consensus 519 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 598 (808)
...+..+...+.+.|++++|+..|+++++.. +.+..++..+...|...|++++|+..|+++.+.. +.+..+|..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3345666666666666666666666666542 3356666666666666777777777776666542 2245666666777
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCcCH-----------HhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 046719 599 YSSLGSSQKCLELYENMKKLGIKPSL-----------RTYHPLLSGCIREG-IVAVEKLFNEMLQINLV-PDLLVYNALI 665 (808)
Q Consensus 599 ~~~~g~~~~A~~~~~~~~~~~~~p~~-----------~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 665 (808)
|...|++++|+..|+++.+. .|+. ..+..+...+...| +++|.+.++++++.... .+...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 77777777777777776653 2221 12223355666777 88888888888876422 1678899999
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCh
Q 046719 666 HCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDF 744 (808)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~ 744 (808)
..|...|++++|++.|+++++. .+.+..+|..++.++...|++++|+..++++++ ..| +..++..++.+|.+.|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCH
Confidence 9999999999999999999984 233566899999999999999999999999988 445 478899999999999999
Q ss_pred hHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 046719 745 GGAYIWYREMFENGFIP-----------SFCIYNELTNGLKQEGKLKEAQILCSEI 789 (808)
Q Consensus 745 ~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 789 (808)
++|...++++++..+.. +...|..++.++...|+.+.|.+..++.
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 99999999999864331 3578899999999999999888776653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-17 Score=167.97 Aligned_cols=375 Identities=11% Similarity=0.106 Sum_probs=174.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 046719 356 KEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEE 435 (808)
Q Consensus 356 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 435 (808)
+.|++++|.+.++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5677888888887772 2347888888888888888888888653 466788888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046719 436 WVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGV 515 (808)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~ 515 (808)
.++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 77766653 3456777888888888888888877774 366678888888888888888888888866
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 046719 516 LPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSL 595 (808)
Q Consensus 516 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 595 (808)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 36888888888888888888888887 267888888888888888888855544322 233334468
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC---HHHHHHHHHHHHHCCCCC------CHHHHHHHHH
Q 046719 596 ISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG---IVAVEKLFNEMLQINLVP------DLLVYNALIH 666 (808)
Q Consensus 596 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~a~~~~~~~~~~~~~~------~~~~~~~l~~ 666 (808)
+..|.+.|++++|+.+++...... +-....|+-+.-.+++-. +.+..++|..- .+++| +...|..++-
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHH
Confidence 888888889999988888887543 334566777766777766 44555555422 12233 3467888899
Q ss_pred HHHccCCHHHHHHHHHHHHHCC--------------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 046719 667 CYAEHGDVQKALVLHSEMVDQG--------------IRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYN 732 (808)
Q Consensus 667 ~~~~~g~~~~A~~~~~~~~~~g--------------~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 732 (808)
.|...++++.|..+ |.+.. -..+...|...+..|... ...++.-+...+...+.+ .
T Consensus 291 ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p~~l~~ll~~l~~~ld~-----~ 360 (449)
T 1b89_A 291 LYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPRLDH-----T 360 (449)
T ss_dssp HHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGGCCH-----H
T ss_pred HHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhccCc-----H
Confidence 99999999988864 44420 012344455555555522 223333333332211222 3
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 046719 733 ILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCS 787 (808)
Q Consensus 733 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~ 787 (808)
..+..+.+.|+..-...+++.+... .+..+-..|-..|....+++.=+..++
T Consensus 361 r~v~~~~~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 361 RAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp HHHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4456667888888888888777744 255666677788888888776554444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-16 Score=160.12 Aligned_cols=257 Identities=11% Similarity=-0.036 Sum_probs=117.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 046719 494 LCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEA 573 (808)
Q Consensus 494 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 573 (808)
....|++.+|+..++........+.......+.++|...|+++.|+..++. ..+|+..++..+...+...|+.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 334455555555554433221111112333444555555555555543322 1233444444555555555555555
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHC
Q 046719 574 EDMLPQITSSGLNP-DVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQI 652 (808)
Q Consensus 574 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ 652 (808)
++.++++...+..| +...+..+...+...|++++|++.+++
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------------------------------------- 126 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------------------------------------- 126 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------------------------------------
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------------------------------------
Confidence 55555554443223 233344444455555555555555543
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHH
Q 046719 653 NLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTY---NSLIFGHLREGKLSEVKELVNDMKVKGLIPKAD 729 (808)
Q Consensus 653 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 729 (808)
+.+...+..++.+|.+.|++++|.+.++++.+. .|+.... ..++..+...|++++|..+|+++.+. .+.+..
T Consensus 127 --~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~ 201 (291)
T 3mkr_A 127 --GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLL 201 (291)
T ss_dssp --CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHH
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHH
Confidence 233344444455555555555555555555442 2332211 11112222334555555555555443 122344
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHHcCCCCCc
Q 046719 730 TYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKE-AQILCSEISIVGKDAWT 798 (808)
Q Consensus 730 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~-A~~~~~~~~~~~~~~~~ 798 (808)
.+..++.++.+.|++++|...++++++..|. ++.++..++..+...|+..+ +..+++++++..|++..
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 4555555555555555555555555554444 44555555555555555543 34455555555555443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5e-17 Score=166.96 Aligned_cols=268 Identities=10% Similarity=-0.048 Sum_probs=187.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046719 521 IYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYS 600 (808)
Q Consensus 521 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 600 (808)
.+..+...+...|++++|+.+|+++++.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34444555555555555555555555442 2244555555555555555555555555555432 223445555555555
Q ss_pred cCCCHHHHHHHHHHHHHCCCCcC-HHhHHHH--------------HH-HHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHH
Q 046719 601 SLGSSQKCLELYENMKKLGIKPS-LRTYHPL--------------LS-GCIREG-IVAVEKLFNEMLQINLVPDLLVYNA 663 (808)
Q Consensus 601 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l--------------~~-~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 663 (808)
..|++++|...++++.+.. |+ ...+..+ .. .+...| +++|.+.++++++.. +.+...+..
T Consensus 101 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 6666666666666555431 22 1122111 11 245556 888999999988864 456788999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 046719 664 LIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKD 743 (808)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 743 (808)
++..|...|++++|++.++++.+.. +.+..++..++..+...|++++|...++++.+.. +.+...+..++.++...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999852 3356689999999999999999999999998842 2357889999999999999
Q ss_pred hhHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 744 FGGAYIWYREMFENGFIP-----------SFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 744 ~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
+++|...++++++..+.. +...+..++.++.+.|++++|...+++.++.-++
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 999999999999876553 5788899999999999999999999876654433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-16 Score=162.56 Aligned_cols=182 Identities=13% Similarity=0.124 Sum_probs=34.4
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHH
Q 046719 111 SAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACE 190 (808)
Q Consensus 111 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 190 (808)
..|+.++|.++++++ +...+|..|+.++.+.|++++|...|.+. +|..+|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 444555555555444 12234555555555555555555555432 244455555555555555555555
Q ss_pred HHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046719 191 IFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKV 270 (808)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 270 (808)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 44444432 2234445555555555555555554442 134445555555555555555555555543
Q ss_pred CcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHH
Q 046719 271 EVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGV 328 (808)
Q Consensus 271 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 328 (808)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA 196 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHH
Confidence 23445555555555555555555444 1344444444444444444444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-15 Score=163.30 Aligned_cols=388 Identities=12% Similarity=-0.004 Sum_probs=253.8
Q ss_pred CCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHC-----C--CCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--
Q 046719 340 FRINSYTCSILLNALCKEGKVEIAEEIVGKEIEN-----G--LVP-DEVMFNTIVSGYCRTGDLNRAMLAIQQMENHG-- 409 (808)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-- 409 (808)
.......|+.|...+...|+.++|++.|++.++. + ..| ...+|+.+...|...|++++|...+++..+..
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3344567899999999999999999999987652 1 122 45689999999999999999999999886521
Q ss_pred ----C-CCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHCC
Q 046719 410 ----L-APNCITFNTLIDKFCE--LGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDG---YGRMGHFDKCFQILEEMENSG 479 (808)
Q Consensus 410 ----~-~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~ 479 (808)
. .....++..+..++.. .+++++|+..|++..+..+. +...+..+... +...++.++|++.+++..+..
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1 1134556666555554 45799999999999987433 45555555544 445678889999999887753
Q ss_pred CCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 046719 480 MKPNVVSYGSLINWLCK----DCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLV 555 (808)
Q Consensus 480 ~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 555 (808)
+.+..++..+...+.. .+++++|...+++...... .+..++..+...+...|++++|+..++++++.. +.+..
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 282 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY 282 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence 4456666666655544 4678899999999887643 367789999999999999999999999999863 44677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 046719 556 TFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCI 635 (808)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 635 (808)
++..+...|...+.... ... ...........+..++|...+++..+.. +.+..++..+...+.
T Consensus 283 ~~~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHH
Confidence 77777776643221111 000 0000111112234567888888877642 344566777778888
Q ss_pred HcC-HHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 046719 636 REG-IVAVEKLFNEMLQINLVPDL--LVYNALIH-CYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSE 711 (808)
Q Consensus 636 ~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~ 711 (808)
..| +++|.+.|++.++....+.. ..+..+.. .+...|++++|+..|++.++ +.|+....... ...
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~~~ 414 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------KDK 414 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------HHH
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------HHH
Confidence 888 88898888888876433322 12333333 24577999999999999998 56765433222 234
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 712 VKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 712 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+..++++.++.. +.+..+|..++.++...|++++|++.|+++++.++.
T Consensus 415 l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 415 LQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 455666666532 336788999999999999999999999999997765
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=7e-16 Score=154.11 Aligned_cols=257 Identities=13% Similarity=0.065 Sum_probs=180.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcC
Q 046719 456 IDGYGRMGHFDKCFQILEEMENSGMKPNV--VSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMG 533 (808)
Q Consensus 456 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 533 (808)
+.-....|++..|+..++..... .|+. .....+..+|...|++++|...++. ..+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34456789999999998876543 3433 4556678899999999999986654 24567888999999999999
Q ss_pred CHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 046719 534 RIKDAFKFFDEMVKREM-GPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELY 612 (808)
Q Consensus 534 ~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 612 (808)
+.++|++.+++++..+. +.+...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999998764 44577788888999999999999999987 457789999999999999999999999
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 046719 613 ENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD 692 (808)
Q Consensus 613 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd 692 (808)
+++.+. .|+.... .+. ..++..+...|++++|+.+|+++.+. .+.+
T Consensus 154 ~~~~~~--~p~~~~~-~l~------------------------------~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~ 199 (291)
T 3mkr_A 154 KKMQDQ--DEDATLT-QLA------------------------------TAWVSLAAGGEKLQDAYYIFQEMADK-CSPT 199 (291)
T ss_dssp HHHHHH--CTTCHHH-HHH------------------------------HHHHHHHHCTTHHHHHHHHHHHHHHH-SCCC
T ss_pred HHHHhh--CcCcHHH-HHH------------------------------HHHHHHHhCchHHHHHHHHHHHHHHh-CCCc
Confidence 999875 2442211 111 11222233445666666666666654 2334
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhH-HHHHHHHHHHCCCC
Q 046719 693 KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGG-AYIWYREMFENGFI 760 (808)
Q Consensus 693 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~ 760 (808)
...++.++.++.+.|++++|...++++++ ..| ++.++..++.++...|+.++ +.++++++++..|.
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~--~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQEALD--KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 44566666666666666666666666655 233 45556666666666666654 34566666655544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-16 Score=164.82 Aligned_cols=260 Identities=11% Similarity=-0.022 Sum_probs=181.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 046719 485 VSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGL 564 (808)
Q Consensus 485 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 564 (808)
..+..+...+.+.|++++|...|+++.+... .+..++..+...+...|++++|+..|+++++.. +.+..++..+...|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3355555555566666666666666555432 245566666666666666666666666666542 23456666666666
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-cCHHhHHHHHH
Q 046719 565 CKKGRVMEAEDMLPQITSSGLNPD-----------VITYNSLISGYSSLGSSQKCLELYENMKKLGIK-PSLRTYHPLLS 632 (808)
Q Consensus 565 ~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~ 632 (808)
...|++++|...++++.+.. |+ ...+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 66666666666666665531 21 223344577788888888888888888875311 15777888888
Q ss_pred HHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHh
Q 046719 633 GCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLS 710 (808)
Q Consensus 633 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~ 710 (808)
.+...| +++|.+.|+++++.. +.+..+|+.++.+|...|++++|+..|+++++. .| +..++..++.+|...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHH
Confidence 888888 889999998888764 556789999999999999999999999999984 45 4668999999999999999
Q ss_pred HHHHHHHHHHHCCCCC-------------CHHHHHHHHHHHHccCChhHHHHHHHH
Q 046719 711 EVKELVNDMKVKGLIP-------------KADTYNILVKGYCNLKDFGGAYIWYRE 753 (808)
Q Consensus 711 ~A~~~~~~~~~~g~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 753 (808)
+|...++++++. .| +...|..+..++...|+.+.|....++
T Consensus 299 ~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999998763 22 257899999999999999998887665
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.3e-18 Score=185.34 Aligned_cols=118 Identities=11% Similarity=0.143 Sum_probs=69.7
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHhhh---CCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 046719 168 DKFTYGKAVQAAVKIGDLKRACEIFDGMEK---SRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNT 244 (808)
Q Consensus 168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 244 (808)
-..+||++|.+|++.|++++|.++|++|.+ .|+.||+.+||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 344566666666666666666666655432 34556666666666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 046719 245 LVDGYCKVGEF-EKVSALRERMKRDKVEVSLVMFNSLLGGFC 285 (808)
Q Consensus 245 li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 285 (808)
||.++|+.|+. ++|.++|++|.+.|+.||..+|++++.+..
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 66666666553 455566666666666666666665554443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=7.5e-16 Score=158.14 Aligned_cols=263 Identities=9% Similarity=-0.053 Sum_probs=183.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 046719 486 SYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLC 565 (808)
Q Consensus 486 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 565 (808)
.+..+...+...|++++|..+|+++.+... .+...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 344445555555556666655555555422 244555556666666666666666666665542 234555666666666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHH
Q 046719 566 KKGRVMEAEDMLPQITSSGLNPDVITYNSL--------------IS-GYSSLGSSQKCLELYENMKKLGIKPSLRTYHPL 630 (808)
Q Consensus 566 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 630 (808)
..|++++|...++++.+... .+...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 66666666666666665321 111222222 22 3667788888888888888753 3456777778
Q ss_pred HHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 046719 631 LSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKL 709 (808)
Q Consensus 631 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~ 709 (808)
...+...| +++|.+.++++++.. +.+...+..++..+...|++++|++.++++.+.. +.+..++..++.++...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 88888888 888888888888764 4567888999999999999999999999998842 33566899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 710 SEVKELVNDMKVKGLIPK-------------ADTYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 710 ~~A~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
++|...++++.+. .|+ ...|..++.++.+.|++++|..+++++++
T Consensus 257 ~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 257 DLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999873 344 67888999999999999999999887654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=181.34 Aligned_cols=120 Identities=12% Similarity=0.123 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHH
Q 046719 133 SLDSINVLLECLVRCNQYDRALDLFDEIV---CMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNV 209 (808)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 209 (808)
...+||+||++|++.|+.++|..+|+.|. ..|+.||+.+||++|.+|++.|++++|.++|++|.+.|+.||++|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999998875 458899999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCH-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 046719 210 LISGFCKEKKI-RDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKV 252 (808)
Q Consensus 210 l~~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 252 (808)
+|+++|+.|+. ++|.++|++|.+.|+.||.++|+.++.++.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 99999999984 78899999999999999999999998766554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-15 Score=142.80 Aligned_cols=199 Identities=15% Similarity=0.062 Sum_probs=131.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 046719 552 PTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLL 631 (808)
Q Consensus 552 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 631 (808)
++...+..+...+.+.|++++|...|++.++.. +.+...|..+...+.+.|++++|+..|++..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-------------- 67 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVA-------------- 67 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------
Confidence 344455555555555555555555555555432 22344555555555555555555555555554
Q ss_pred HHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 046719 632 SGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEH-----------GDVQKALVLHSEMVDQGIRPD-KMTYNSL 699 (808)
Q Consensus 632 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~g~~pd-~~~~~~l 699 (808)
.+ +.+...+..+..++... |++++|+..+++.++ +.|+ ...+..+
T Consensus 68 --------------------~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~l 124 (217)
T 2pl2_A 68 --------------------RT-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQR 124 (217)
T ss_dssp --------------------HC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred --------------------hC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence 32 23344555555555555 999999999999998 4564 5588899
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 046719 700 IFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKL 779 (808)
Q Consensus 700 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 779 (808)
+.++...|++++|+..++++++.. .++..+..++.++...|++++|+..|+++++..|. +...+..++.++...|++
T Consensus 125 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 125 GLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKA 201 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC----
T ss_pred HHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCH
Confidence 999999999999999999998865 77888999999999999999999999999998777 888999999999999999
Q ss_pred hHHHHHHHHHHH
Q 046719 780 KEAQILCSEISI 791 (808)
Q Consensus 780 ~~A~~~~~~~~~ 791 (808)
++|...++++-.
T Consensus 202 ~~A~~~~~~~~~ 213 (217)
T 2pl2_A 202 EEAARAAALEHH 213 (217)
T ss_dssp ------------
T ss_pred HHHHHHHHHHhh
Confidence 999999887643
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.2e-15 Score=144.49 Aligned_cols=226 Identities=12% Similarity=0.079 Sum_probs=133.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCC----HHHH
Q 046719 519 AQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGL--NPD----VITY 592 (808)
Q Consensus 519 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~ 592 (808)
...+..+...+...|++++|+..|+++++.. .+..++..+...+...|++++|...++++.+... .++ ...|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3455666666666666666666666666654 4556666666666666666666666666654211 011 3455
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 046719 593 NSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHG 672 (808)
Q Consensus 593 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 672 (808)
..+...|...|++++|+..|+++.+. .|+ . ..+...|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~----------------------------------~-------~~~~~~~ 119 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRT----------------------------------A-------DILTKLR 119 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCC----------------------------------H-------HHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cch----------------------------------h-------HHHHHHh
Confidence 55555666666666666666655542 222 1 2334445
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 046719 673 DVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWY 751 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 751 (808)
++++|...++++.+ ..|+ ...+..++..+...|++++|...++++.+.. +.+..++..++.++...|++++|+..+
T Consensus 120 ~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 120 NAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 56666666666665 2333 2356666666666666666666666666531 224556666666666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 752 REMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 752 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
+++++..+. +...+..++.++...|++++|...++++++..
T Consensus 197 ~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 197 NKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 666665544 56666666666666666666666666666655
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-14 Score=142.33 Aligned_cols=227 Identities=13% Similarity=0.039 Sum_probs=182.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----HHH
Q 046719 483 NVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMG--PT----LVT 556 (808)
Q Consensus 483 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~ 556 (808)
....+..+...+...|++++|...|+++.+.. .+...+..+...+...|++++|+..++++++.... ++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678889999999999999999999999886 68899999999999999999999999999875211 12 578
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHH
Q 046719 557 FNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIR 636 (808)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 636 (808)
+..+...+...|++++|...++++.+. .|+. ..+...|++++|...++++....
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~----------------- 135 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN----------------- 135 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-----------------
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-----------------
Confidence 899999999999999999999999984 4553 33455666777777777766531
Q ss_pred cCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 046719 637 EGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELV 716 (808)
Q Consensus 637 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~ 716 (808)
+.+...+..++..+...|++++|+..++++++.. +.+..++..++.++...|++++|...+
T Consensus 136 ------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 136 ------------------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp ------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 2234566677788888888888888888888742 335667888888888889999999888
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 717 NDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 717 ~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
+++++. .| +...|..++.++.+.|++++|...++++++..
T Consensus 197 ~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 197 NKAIEK--DPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHh--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 888874 34 47778888888889999999999998888765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-14 Score=155.36 Aligned_cols=221 Identities=12% Similarity=-0.003 Sum_probs=142.5
Q ss_pred HHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHCCCCcCHHhHH
Q 046719 556 TFNALINGLCKKG---RVMEAEDMLPQITSSGLNPDVITYNSLISGYSSL----GSSQKCLELYENMKKLGIKPSLRTYH 628 (808)
Q Consensus 556 ~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~ 628 (808)
.+..|...|...| +.++|++.|++..+.| .++...+..+...|... +++++|+..|++.. +-+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHH
Confidence 5566666666666 6667777777766655 33444445555555443 56777777777765 23344444
Q ss_pred HHHHH-H--HHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046719 629 PLLSG-C--IREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHG-----DVQKALVLHSEMVDQGIRPDKMTYNSL 699 (808)
Q Consensus 629 ~l~~~-~--~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~g~~pd~~~~~~l 699 (808)
.+... + ...+ .++|.+.|++..+.| +...+..|...|. .| ++++|++.|++.. .| +...+..|
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHH
Confidence 44444 2 2344 777777777777655 4556666777766 45 8899999988886 33 56677788
Q ss_pred HHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 700 IFGHLR----EGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCN----LKDFGGAYIWYREMFENGFIPSFCIYNELTN 771 (808)
Q Consensus 700 ~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 771 (808)
+..|.. ..++++|..++++..+.|. ......|+..|.. ..|.++|..+|+++.+.|.. +.......+.
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~ 400 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLE 400 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHH
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHH
Confidence 877776 3488999999999887653 3455667777764 45889999999999887754 3333333333
Q ss_pred HHHhcCChhHHHHHHHHHHHcC
Q 046719 772 GLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 772 ~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
.....++..+|..++++-.+..
T Consensus 401 ~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 401 APLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhc
Confidence 3334456677777777766543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.5e-13 Score=133.21 Aligned_cols=226 Identities=14% Similarity=-0.012 Sum_probs=127.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHH
Q 046719 518 NAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCK----KGRVMEAEDMLPQITSSGLNPDVITYN 593 (808)
Q Consensus 518 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 593 (808)
+..++..+...+...|++++|+..|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444455555555555555555555555542 134444555555555 555555555555555433 344444
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 594 SLISGYSS----LGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYA 669 (808)
Q Consensus 594 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 669 (808)
.+...|.. .+++++|+..|++.. +.+ +...+..+...|.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~----------------------------------~~~---~~~a~~~lg~~~~ 121 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKAC----------------------------------DLK---YAEGCASLGGIYH 121 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHH----------------------------------HTT---CHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHH----------------------------------HcC---CccHHHHHHHHHH
Confidence 55555554 555555555555444 432 3445555555555
Q ss_pred c----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-
Q 046719 670 E----HGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLR----EGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCN- 740 (808)
Q Consensus 670 ~----~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~- 740 (808)
. .|++++|++.|++..+.+ +...+..++..+.. .+++++|+.++++..+.+ +...+..++.+|..
T Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g 195 (273)
T 1ouv_A 122 DGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHG 195 (273)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 5 666666666666666643 34455566666665 666666666666666532 34555566666666
Q ss_pred ---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC
Q 046719 741 ---LKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQ----EGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 741 ---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~~~~ 795 (808)
.+++++|+.+++++.+.++ ...+..++.+|.. .|++++|..+++++.+.+++
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 6666666666666666532 4555666666666 66666666666666666543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.4e-14 Score=139.87 Aligned_cols=233 Identities=11% Similarity=0.040 Sum_probs=141.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC--HHhHHHHHHHHHHc
Q 046719 560 LINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS--LRTYHPLLSGCIRE 637 (808)
Q Consensus 560 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~ 637 (808)
....+...|++++|+..|+++.+.. +.+...+..+...|...|++++|+..++++.+....++ ...+..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3344444444444444444444432 11223444444445555555555555555444211111 11244444445555
Q ss_pred C-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHH
Q 046719 638 G-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKEL 715 (808)
Q Consensus 638 ~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~ 715 (808)
| +++|.+.|++.++.. +.+...+..++..|...|++++|++.++++++. .| +...+..++..+...+++++|...
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 555555555555432 334567777888888888888888888888774 44 445677777444445588888888
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHccCC---hhHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCChhHHHH
Q 046719 716 VNDMKVKGLIP-KADTYNILVKGYCNLKD---FGGAYIWYREMFENG-FIPS------FCIYNELTNGLKQEGKLKEAQI 784 (808)
Q Consensus 716 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~l~~~g~~~~A~~ 784 (808)
++++++ ..| +...+..++.++...|+ +++|...++++++.. ..|+ ...+..++..+...|++++|..
T Consensus 165 ~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 165 FVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888877 345 36667777888877777 778888888887642 1122 2567778888888888888888
Q ss_pred HHHHHHHcCCCCCc
Q 046719 785 LCSEISIVGKDAWT 798 (808)
Q Consensus 785 ~~~~~~~~~~~~~~ 798 (808)
.++++++..|++..
T Consensus 243 ~~~~al~~~p~~~~ 256 (272)
T 3u4t_A 243 AWKNILALDPTNKK 256 (272)
T ss_dssp HHHHHHHHCTTCHH
T ss_pred HHHHHHhcCccHHH
Confidence 88888888877654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-13 Score=146.80 Aligned_cols=220 Identities=14% Similarity=0.056 Sum_probs=131.1
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHhCCCCCCHHHHH
Q 046719 521 IYNMLIDGSCTMG---RIKDAFKFFDEMVKREMGPTLVTFNALINGLCKK----GRVMEAEDMLPQITSSGLNPDVITYN 593 (808)
Q Consensus 521 ~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~ 593 (808)
.+..+...|...| +.++|+..|++..+.|. ++...+..|...|... +++++|...|++.. . -+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 5556666666666 66666666666666542 3444444455555433 46666666666665 2 2444555
Q ss_pred HHHHH-H--HcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHc-----CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 594 SLISG-Y--SSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIRE-----GIVAVEKLFNEMLQINLVPDLLVYNALI 665 (808)
Q Consensus 594 ~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 665 (808)
.+... | ...+++++|+..|++..+.| +...+..+...|... ..++|.+.|++.. . -+...+..|.
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg 325 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-G---REVAADYYLG 325 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHH
Confidence 55554 3 34666777777777766644 444555555555432 2667777777666 2 2455666666
Q ss_pred HHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 666 HCYAE----HGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLR----EGKLSEVKELVNDMKVKGLIPKADTYNILVKG 737 (808)
Q Consensus 666 ~~~~~----~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 737 (808)
..|.. ..++++|...|++..+.| +......|+..|.. ..+..+|..++++..+.|. ++.......+..
T Consensus 326 ~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~ 401 (452)
T 3e4b_A 326 QIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEA 401 (452)
T ss_dssp HHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHT
T ss_pred HHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
Confidence 66655 348889999999888865 34455677777764 4578889999888887663 222222222222
Q ss_pred HHccCChhHHHHHHHHHHH
Q 046719 738 YCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~~ 756 (808)
....++..+|..+.++..+
T Consensus 402 ~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 402 PLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp TCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHH
Confidence 2334466777777776654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.6e-14 Score=138.05 Aligned_cols=250 Identities=10% Similarity=0.030 Sum_probs=155.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHH
Q 046719 522 YNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPD--VITYNSLISGY 599 (808)
Q Consensus 522 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~ 599 (808)
+......+...|++++|+..|+++++.. +.+...+..+...+...|++++|+..++++.+....++ ...|..+...|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3444455555566666666665555542 22333555555556666666666666666555221111 12355566666
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 046719 600 SSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKAL 678 (808)
Q Consensus 600 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 678 (808)
...|++++|+..|++..+.. +.+...+..+...+...| +++|.+.+++.++.. +.+...+..+...+...+++++|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665532 223455555666666666 666666666666542 445666777773344456999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC---HhHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHccCChhHH
Q 046719 679 VLHSEMVDQGIRPD-KMTYNSLIFGHLREGK---LSEVKELVNDMKVKG-LIPK------ADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 679 ~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g-~~p~------~~~~~~l~~~~~~~g~~~~A 747 (808)
+.|+++++. .|+ ...+..++.++...|+ +++|...++++.+.. -.|+ ...|..++..|...|++++|
T Consensus 163 ~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 163 SSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999884 454 5577888888888888 888998888876531 1133 25677889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 748 YIWYREMFENGFIPSFCIYNELTNGLKQEG 777 (808)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 777 (808)
..+++++++..|. +...+..+.......+
T Consensus 241 ~~~~~~al~~~p~-~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 241 DAAWKNILALDPT-NKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHC-------
T ss_pred HHHHHHHHhcCcc-HHHHHHHhhhhhcccc
Confidence 9999999998877 7777777766655444
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.6e-14 Score=134.50 Aligned_cols=197 Identities=15% Similarity=0.010 Sum_probs=95.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHH
Q 046719 133 SLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLIS 212 (808)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 212 (808)
+...+..+...+.+.|++++|...|+++++..+. +...|..+..++.+.|++++|+..|++.++..+ .+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 3344455555555555555555555555544333 444555555555555555555555555554332 13444555555
Q ss_pred HHHcc-----------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 046719 213 GFCKE-----------KKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLL 281 (808)
Q Consensus 213 ~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 281 (808)
++.+. |++++|+..|++..+..+. +...|..+...|...|++++|...|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 5555666555555554322 34455555555555566666666665555544 4455555555
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHH
Q 046719 282 GGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEEL 335 (808)
Q Consensus 282 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 335 (808)
..|...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55555666666666665555542 113445555555555556665555555543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-12 Score=128.97 Aligned_cols=227 Identities=13% Similarity=-0.049 Sum_probs=186.8
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 046719 482 PNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCT----MGRIKDAFKFFDEMVKREMGPTLVTF 557 (808)
Q Consensus 482 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 557 (808)
-+..++..+...+...|++++|...|++..+.+ +...+..+...+.. .+++++|+..|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 367788889999999999999999999998842 56778889999999 999999999999999875 78889
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCcCHHhHHH
Q 046719 558 NALINGLCK----KGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSS----LGSSQKCLELYENMKKLGIKPSLRTYHP 629 (808)
Q Consensus 558 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 629 (808)
..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---------- 144 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---------- 144 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----------
Confidence 999999999 999999999999999864 67888888888888 888888888888877643
Q ss_pred HHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046719 630 LLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAE----HGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLR 705 (808)
Q Consensus 630 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~ 705 (808)
+...+..+...|.. .+++++|+..|++..+.+ +...+..++..|..
T Consensus 145 ---------------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 145 ---------------------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHH 194 (273)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred ---------------------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 22334445555655 788888888888888753 45677788888888
Q ss_pred ----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCC
Q 046719 706 ----EGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCN----LKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 706 ----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 760 (808)
.+++++|+.+++++.+.+ | ...+..++.+|.. .+++++|+++++++.+.++.
T Consensus 195 g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 195 GEGATKNFKEALARYSKACELE--N-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 888899998888888753 2 6677788888888 88999999999998887654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-13 Score=132.70 Aligned_cols=204 Identities=12% Similarity=0.025 Sum_probs=142.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 591 TYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYA 669 (808)
Q Consensus 591 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 669 (808)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...| +++|.+.++++++.. +.+...+..++..|.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 34444445555555555555555554431 223444444555555555 555555555555542 335667777888888
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHH
Q 046719 670 EHGDVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAY 748 (808)
Q Consensus 670 ~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 748 (808)
..|++++|++.++++.+.+..|+ ...+..++..+...|++++|..+++++.+.. +.+...+..++.++...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888877333453 4477788888888888888888888887742 235777888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 749 IWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.+++++++..+. +...+..++.++...|++++|..+++++.+..|++..
T Consensus 196 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 196 QYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 888888877655 6777888888888888888888888888888877654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=7.4e-14 Score=144.11 Aligned_cols=233 Identities=10% Similarity=0.042 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 046719 555 VTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGS-SQKCLELYENMKKLGIKPSLRTYHPLLSG 633 (808)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 633 (808)
..|..+...+...|++++|+..++++++.. +-+...|+.+...+...|+ +++|+..|+++++.. +-+...|..+...
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 344444445555555555555555555432 1234455555555555554 555555555555432 2234455555555
Q ss_pred HHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh-cCCHh
Q 046719 634 CIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLR-EGKLS 710 (808)
Q Consensus 634 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~-~g~~~ 710 (808)
+...| +++|...|+++++.+ +.+...|..+..++...|++++|+..|+++++. .| +...|+.++.++.. .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 55555 556666666666543 446778888888888889999999999999884 55 45588888888888 56557
Q ss_pred HH-----HHHHHHHHHCCCCC-CHHHHHHHHHHHHccC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----
Q 046719 711 EV-----KELVNDMKVKGLIP-KADTYNILVKGYCNLK--DFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG----- 777 (808)
Q Consensus 711 ~A-----~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g----- 777 (808)
+| +..++++++ +.| +...|..++.++...| ++++|++.++++ +.++. +..++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~-~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS-SPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC-CHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC-CHHHHHHHHHHHHHHhccccc
Confidence 77 488888887 556 5678888888888888 688999988887 55554 6788888999888874
Q ss_pred ----ChhHHHHHHHHH-HHcCCCC
Q 046719 778 ----KLKEAQILCSEI-SIVGKDA 796 (808)
Q Consensus 778 ----~~~~A~~~~~~~-~~~~~~~ 796 (808)
..++|+++++++ .+..|..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred chHHHHHHHHHHHHHHHHHhCchh
Confidence 258899999998 7777653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-11 Score=131.82 Aligned_cols=475 Identities=10% Similarity=0.023 Sum_probs=277.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCC---hHHHHH
Q 046719 114 LPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGD---LKRACE 190 (808)
Q Consensus 114 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~ 190 (808)
...+-...|...+..+ +.|...|..++..+.+.+.++.++.+|++++..-+. ....|..-+..-.+.|+ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~-~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL-MANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455555555555554 468888999999998888999999999998886443 77788888888888888 899999
Q ss_pred HHHHhhhCCC-CCChhhHHHHHHHHHccCCH--------hHHHHHHHHHHh-CCC-CCC-HHHHHHHHHHHHh-------
Q 046719 191 IFDGMEKSRT-RPNVFVYNVLISGFCKEKKI--------RDAEKLFDEMCQ-RKL-VPT-RVTYNTLVDGYCK------- 251 (808)
Q Consensus 191 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~m~~-~~~-~p~-~~~~~~li~~~~~------- 251 (808)
+|++.+...+ .|++..|...+.-..+.++. +...++|+.... .|. .|+ ...|...+....+
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9999887631 36788888877766665553 234467776554 354 443 4577777765442
Q ss_pred --cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHH
Q 046719 252 --VGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVM 329 (808)
Q Consensus 252 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 329 (808)
+++++.+..+|++.+......-..+|..... +.+.-+...+..++.+ ...+++.|.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e---------------------~~~~y~~Ar 262 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGE---------------------LSAQYMNAR 262 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHH---------------------HHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHH---------------------hhHHHHHHH
Confidence 3345667777777664211111122221111 1000000011111111 011233334
Q ss_pred HHHHHHHhC--CC----CcChhcHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-------CH
Q 046719 330 ALYEELSGR--GF----RINSYTCSILLNALCKEG-KVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTG-------DL 395 (808)
Q Consensus 330 ~~~~~~~~~--~~----~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~ 395 (808)
..+.++... ++ +....... ....-..+ ...... ..|...+..--..+ ..
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~ql---------------~lW~~yi~fEk~~~~~l~~~~~~ 325 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQQL---------------LIWLEWIRWESDNKLELSDDLHK 325 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHHHH---------------HHHHHHHHHHHTCTTCCCHHHHH
T ss_pred HHHHHHHHHHHhHhhccccccccch--hccCCCCchhHHHHH---------------HHHHHHHHHHHhCCccccchhhH
Confidence 434332210 11 00000000 00000000 000111 22333333222221 12
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 046719 396 NRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAE-EWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEE 474 (808)
Q Consensus 396 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 474 (808)
+.+..+|++..... +-+...|...+..+...|+.++|. +++++.... ++.+...|...+...-+.|+++.|.++|++
T Consensus 326 ~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34556677776653 336777877777777788888886 888888764 233555667777777788888888888888
Q ss_pred HHHCCC---------CC------------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhc-
Q 046719 475 MENSGM---------KP------------NVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTM- 532 (808)
Q Consensus 475 m~~~~~---------~~------------~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~- 532 (808)
+..... .| ...+|...+....+.|..+.|..+|....+.-.......|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 765310 12 12357777777777888888888888887651111233443333333333
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCCHHHHHH
Q 046719 533 GRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNP--DVITYNSLISGYSSLGSSQKCLE 610 (808)
Q Consensus 533 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 610 (808)
++++.|.++|+..++. ++.+...+...+......|+.+.|..+|+..+.....+ ....|...+..-.+.|+.+.+..
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4588888888888876 45567777778887778888888888888888753221 23577778887788888888888
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHH
Q 046719 611 LYENMKKLGIKPSLRTYHPLLSGC 634 (808)
Q Consensus 611 ~~~~~~~~~~~p~~~~~~~l~~~~ 634 (808)
+.+++.+. .|+......+..-|
T Consensus 563 v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 563 LEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHh--CCCCcHHHHHHHHh
Confidence 88888875 34444444444433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-13 Score=135.08 Aligned_cols=203 Identities=9% Similarity=-0.010 Sum_probs=120.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 591 TYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYA 669 (808)
Q Consensus 591 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 669 (808)
.|..+...+...|++++|...|+++.+. .+.+...+..+...+...| +++|.+.++++++.. +.+...+..++..+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 3444444444455555555555554442 1223444444444444444 555555555554432 334566666777777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHH
Q 046719 670 EHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYI 749 (808)
Q Consensus 670 ~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 749 (808)
..|++++|++.++++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..++.++...|++++|+.
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777777642 3345567777777777777777777777776631 2356667777777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 750 WYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.++++++..+. +...+..++.++...|++++|...++++++..|++..
T Consensus 181 ~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 181 QFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence 77777776554 6677777777777777777777777777777776554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-13 Score=140.27 Aligned_cols=246 Identities=13% Similarity=0.093 Sum_probs=170.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046719 520 QIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGR-VMEAEDMLPQITSSGLNPDVITYNSLISG 598 (808)
Q Consensus 520 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 598 (808)
..|..+...+...|++++|+..+++++... +.+..+|+.+...+...|+ +++|+..|+++++.. +.+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 345566666666677777777777766653 2356666666666777775 777777777776642 2245666667777
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHH
Q 046719 599 YSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAE-HGDVQK 676 (808)
Q Consensus 599 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 676 (808)
+...|++++|+..|+++++.. +-+...|..+...+...| +++|.+.|+++++.+ +.+...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 777777777777777776642 334566666666666667 777777777777654 4466788888888887 566577
Q ss_pred H-----HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC--CHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccC-----
Q 046719 677 A-----LVLHSEMVDQGIRPD-KMTYNSLIFGHLREG--KLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLK----- 742 (808)
Q Consensus 677 A-----~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g----- 742 (808)
| +..|+++++ +.|+ ...|+.++.++...| ++++|++.+.++ + ..| +...+..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhccccc
Confidence 7 588888888 4564 458888888888888 588999888887 4 344 5677888888888874
Q ss_pred ----ChhHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHh
Q 046719 743 ----DFGGAYIWYREM-FENGFIPSFCIYNELTNGLKQ 775 (808)
Q Consensus 743 ----~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~l~~ 775 (808)
.+++|+++|+++ .+.+|. ....|..++..+..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQS 365 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHH
Confidence 258899999998 777655 56777777666554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.6e-13 Score=127.11 Aligned_cols=205 Identities=8% Similarity=-0.034 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 590 ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCY 668 (808)
Q Consensus 590 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 668 (808)
..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...| +++|.+.++++++.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344445555555555555555555555431 223444455555555555 555555555555542 34566777888888
Q ss_pred Hcc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChh
Q 046719 669 AEH-GDVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFG 745 (808)
Q Consensus 669 ~~~-g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~ 745 (808)
... |++++|+..++++.+.+..|+ ...+..++.++...|++++|...++++.+. .| +...+..++.++...|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHH
Confidence 888 999999999999887433444 457888889999999999999999998874 34 4777888899999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 746 GAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 746 ~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+|..+++++++..+..+...+..++..+...|+.++|..+++.+.+..|++..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 99999999988776237777888888888999999999999998888877655
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-13 Score=136.87 Aligned_cols=244 Identities=12% Similarity=-0.028 Sum_probs=136.3
Q ss_pred cCCHHHHHHHHHHHHhCCC---CcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 046719 497 DCKLLEAEIVLKDMENRGV---LPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEA 573 (808)
Q Consensus 497 ~~~~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 573 (808)
.+++++|...|+++.+... +.+..++..+...+...|++++|+..|+++++.. +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4555556666655555421 1123445555555555555555555555555542 22455555555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCC
Q 046719 574 EDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQIN 653 (808)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~ 653 (808)
...|+++.+.. +.+...|..+...|...|++++|...|+++.+ .
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~----------------------------------~- 140 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ----------------------------------D- 140 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------------H-
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH----------------------------------h-
Confidence 55555555432 12344455555555555555555555555544 2
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-----H
Q 046719 654 LVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-----A 728 (808)
Q Consensus 654 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~ 728 (808)
.|+.......+..+...|++++|...+++..+. .+++...+ .++..+...++.++|...++++.+. .|+ .
T Consensus 141 -~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 215 (275)
T 1xnf_A 141 -DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGW-NIVEFYLGNISEQTLMERLKADATD--NTSLAEHLS 215 (275)
T ss_dssp -CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHH
T ss_pred -CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc--ccccccccc
Confidence 122222222233334557778888887777664 23333333 4666677777777787777777652 221 4
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILC 786 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~ 786 (808)
..+..++.++.+.|++++|...++++++..|. +. .....++...|++++|+..+
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC---HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH---HHHHHHHHHHHHHHhhHHHH
Confidence 66778888888888888888888888876543 32 22355677778888887765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.57 E-value=9.1e-11 Score=129.18 Aligned_cols=444 Identities=12% Similarity=0.065 Sum_probs=259.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCC---hHHHHHH
Q 046719 290 MEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGK---VEIAEEI 366 (808)
Q Consensus 290 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~ 366 (808)
..+-+..|++.+..+ +-|..+|..++..+.+.++++.+..+|+.+... ++.....|...+..-.+.|+ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 444555555555543 347778888888888888888888888888876 44456677777777777777 8888888
Q ss_pred HHHHHHCCC-CCCHhhHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHH---------
Q 046719 367 VGKEIENGL-VPDEVMFNTIVSGYCRTGDL--------NRAMLAIQQMEN-HGL-APN-CITFNTLIDKFC--------- 425 (808)
Q Consensus 367 ~~~~~~~~~-~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~~-~~~~~~li~~~~--------- 425 (808)
|++.+...+ .|++..|...+....+.++. +....+|+.... .|. .++ ...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 888877541 36777787777766554443 334466666553 344 443 456666665443
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 046719 426 ELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEI 505 (808)
Q Consensus 426 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~ 505 (808)
..++++.+..+|.+++......-..+|......-...+. ..+.+++.+. ...++.|..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar~ 263 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHHH
Confidence 234566777777777642111112233222211111010 0111111110 112233333
Q ss_pred HHHHHHh--CCC----C-----------c--c------hhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCC
Q 046719 506 VLKDMEN--RGV----L-----------P--N------AQIYNMLIDGSCTMG-------RIKDAFKFFDEMVKREMGPT 553 (808)
Q Consensus 506 ~~~~m~~--~~~----~-----------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~ 553 (808)
.+.++.. .++ + | + ...|...+..--..+ ..+.+..+|++++.. ++-+
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~ 342 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFA 342 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTC
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCC
Confidence 3333211 011 0 1 0 124555554333222 134456778888775 4457
Q ss_pred HHHHHHHHHHHHhcCChHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC---------CcC
Q 046719 554 LVTFNALINGLCKKGRVMEAE-DMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGI---------KPS 623 (808)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~p~ 623 (808)
...|...+..+...|+.++|. .+|++.... ++.+...|..++....+.|++++|.++|+++..... .|+
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 888888888888888888886 888888864 344666777888888888999999999988876310 121
Q ss_pred ------------HHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCC
Q 046719 624 ------------LRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHG-DVQKALVLHSEMVDQGI 689 (808)
Q Consensus 624 ------------~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~ 689 (808)
...|...+....+.| .+.|.++|.++++.-.......|...+..-.+.| +.+.|.++|+..++. .
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-F 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-H
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C
Confidence 224555555555555 7777777777776410112223333333333433 477777777777774 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 690 RPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP--KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 690 ~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+-+...|...+......|+.+.|..+|++++.....+ ....|...+.--.+.|+.+.+.++.+++.+..|+
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3344456666776777777777777777777643211 2345666666666777777777777777776554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-13 Score=135.89 Aligned_cols=225 Identities=11% Similarity=-0.076 Sum_probs=155.1
Q ss_pred CChHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHH
Q 046719 568 GRVMEAEDMLPQITSSGLN---PDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVE 643 (808)
Q Consensus 568 g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~ 643 (808)
|++++|+..++++.+.... .+..+|..+...+...|++++|...|+++.+.. +.+..++..+...+...| +++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4445555555555443110 123344555555555555555555555555431 223445555555555555 55566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 046719 644 KLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKG 723 (808)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 723 (808)
+.|+++++.. +.+...+..++.+|...|++++|+..++++.+ ..|+..........+...|++++|...++++...
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 6666555542 34567888899999999999999999999998 4565554455555667789999999999888764
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 724 LIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP---SFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 724 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
..++...+ .++..+...++.++|+..++++++..+.. +...+..++.++...|++++|...+++++..+|+++.
T Consensus 174 ~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23344444 46777888899999999999998654321 2578899999999999999999999999999998877
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-13 Score=131.14 Aligned_cols=211 Identities=12% Similarity=0.069 Sum_probs=130.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHH
Q 046719 557 FNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIR 636 (808)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 636 (808)
+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|+..++++.+.. +.+...+..+...+..
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVV 103 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence 3334444444444444444444444421 1233444444445555555555555555544431 2234444444455555
Q ss_pred cC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 046719 637 EG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKEL 715 (808)
Q Consensus 637 ~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~ 715 (808)
.| +++|.+.++++.+.. +.+...+..++..+...|++++|+..++++.+. .+.+...+..++..+...|++++|...
T Consensus 104 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL-NENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55 555555555555543 445667788888899999999999999999884 233566888999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 716 VNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGL 773 (808)
Q Consensus 716 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 773 (808)
++++.+.. +.+..++..++.++...|++++|...++++++..+. +...+..+....
T Consensus 182 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l~ 237 (243)
T 2q7f_A 182 FAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHHHTC--
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHHHHHHH
Confidence 99988742 335778889999999999999999999999988766 666666554443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-12 Score=124.69 Aligned_cols=207 Identities=12% Similarity=-0.041 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046719 520 QIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGY 599 (808)
Q Consensus 520 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 599 (808)
..+..+...+...|++++|+..|+++++.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 344555555555555555555555555432 2234445555555555555555555555544431 11334444444444
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHH
Q 046719 600 SSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVP-DLLVYNALIHCYAEHGDVQKAL 678 (808)
Q Consensus 600 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 678 (808)
...|+ +++|.+.++++.+.+..| +...+..++..+...|++++|.
T Consensus 116 ~~~g~----------------------------------~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 116 YEQKR----------------------------------YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK 161 (252)
T ss_dssp HHTTC----------------------------------HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhH----------------------------------HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 44444 445555554444411223 4566777888888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 679 VLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 679 ~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
+.++++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..++.++...|++++|..+++++.+..
T Consensus 162 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 162 EYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999988742 3346678888999999999999999999988742 3356778888888889999999999999998876
Q ss_pred CCCCHHH
Q 046719 759 FIPSFCI 765 (808)
Q Consensus 759 ~~~~~~~ 765 (808)
+. +...
T Consensus 240 p~-~~~~ 245 (252)
T 2ho1_A 240 PG-SLEY 245 (252)
T ss_dssp TT-SHHH
T ss_pred CC-CHHH
Confidence 55 4443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.53 E-value=8.8e-13 Score=122.16 Aligned_cols=169 Identities=13% Similarity=0.061 Sum_probs=135.9
Q ss_pred CHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 623 SLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIF 701 (808)
Q Consensus 623 ~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~ 701 (808)
+...|..+...+...| +++|.+.|++.++.+ +.+...+..++.+|.+.|++++|+..++++... .+.+...+..++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CchhHHHHHHHHH
Confidence 3445555666666666 666666666666543 446778888889999999999999999998884 2334557888889
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 046719 702 GHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLK 780 (808)
Q Consensus 702 ~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 780 (808)
.+...++++.|...+.++.+ ..| +...+..++.++.+.|++++|++.|+++++..|. +..++..++.+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 99999999999999999887 344 5778889999999999999999999999998777 8889999999999999999
Q ss_pred HHHHHHHHHHHcCCCC
Q 046719 781 EAQILCSEISIVGKDA 796 (808)
Q Consensus 781 ~A~~~~~~~~~~~~~~ 796 (808)
+|+..++++++.+|++
T Consensus 159 ~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCCccC
Confidence 9999999999887753
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-13 Score=143.63 Aligned_cols=274 Identities=17% Similarity=0.123 Sum_probs=155.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcch----hHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHH
Q 046719 490 LINWLCKDCKLLEAEIVLKDMENRGVLPNA----QIYNMLIDGSCTMGRIKDAFKFFDEMVKR----E-MGPTLVTFNAL 560 (808)
Q Consensus 490 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l 560 (808)
+...+...|++++|...|+++.+.+.. +. ..+..+...+...|++++|+..+++.++. + .+....++..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 333444555555555555555443221 11 24555555555666666666666555432 0 01123455566
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHcCCC-----------------HHHHHHHHHHHHHC
Q 046719 561 INGLCKKGRVMEAEDMLPQITSS----GLN-PDVITYNSLISGYSSLGS-----------------SQKCLELYENMKKL 618 (808)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~~ 618 (808)
...|...|++++|...+++..+. +-. ....++..+...|...|+ +++|++.+++..+
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~- 211 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK- 211 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH-
Confidence 66666666777666666665442 101 123466677777777777 5555555555432
Q ss_pred CCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----H
Q 046719 619 GIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGI-RPD----K 693 (808)
Q Consensus 619 ~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~pd----~ 693 (808)
+..... ........+..+...|...|++++|++.+++..+... .++ .
T Consensus 212 --------------------------~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (411)
T 4a1s_A 212 --------------------------LMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER 263 (411)
T ss_dssp --------------------------HHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred --------------------------HHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 111110 0011234566677777777777777777777765210 011 1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC-----CCH
Q 046719 694 MTYNSLIFGHLREGKLSEVKELVNDMKVKGL-IPK----ADTYNILVKGYCNLKDFGGAYIWYREMFENGFI-----PSF 763 (808)
Q Consensus 694 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~ 763 (808)
.++..++..+...|++++|...++++.+... ..+ ..++..++.++...|++++|..+++++++.... ...
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 343 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH
Confidence 2566777777778888888877777654210 011 355667777777888888888888777653211 113
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 764 CIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 764 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
..+..++.+|...|++++|..++++++...
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 466777778888888888888888777654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.6e-12 Score=121.58 Aligned_cols=195 Identities=9% Similarity=-0.094 Sum_probs=89.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhc-
Q 046719 104 ILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKI- 182 (808)
Q Consensus 104 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 182 (808)
.+...+...|++++|...|..+.+.. +.+..++..++.+|...|++++|...|+++....+. +...+..+...+...
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 13 QLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLCGRL 90 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhc
Confidence 34444555555555555555544432 223444555555555555555555555555444332 344444455555555
Q ss_pred CChHHHHHHHHHhhhCCCCC-ChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 046719 183 GDLKRACEIFDGMEKSRTRP-NVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSAL 261 (808)
Q Consensus 183 g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 261 (808)
|++++|...|+++.+.+..| +...+..+...+...|++++|...|+++.+.... +...+..+...+.+.|++++|...
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 169 (225)
T 2vq2_A 91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDADYY 169 (225)
T ss_dssp CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555544411111 2334444444555555555555555554443211 344444444445555555555555
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 046719 262 RERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEME 301 (808)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 301 (808)
++++....+..+...+..+...+...|+.+++..+++.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 170 FKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5544443221233334444444444444444444444443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.5e-13 Score=141.98 Aligned_cols=301 Identities=14% Similarity=0.012 Sum_probs=174.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCc-c
Q 046719 448 NVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPN----VVSYGSLINWLCKDCKLLEAEIVLKDMENR----GVLP-N 518 (808)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~~-~ 518 (808)
....+......+...|++++|...|++..... +.+ ..++..+...+...|++++|...+++.... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 44455556666666777777777777666542 222 234555566666666666666666654332 1111 1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHH
Q 046719 519 AQIYNMLIDGSCTMGRIKDAFKFFDEMVKREM-GPT----LVTFNALINGLCKKGR--------------------VMEA 573 (808)
Q Consensus 519 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~A 573 (808)
..++..+...+...|++++|+..+++.++... .++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 33455555556666666666666655544200 001 2244444445555555 4444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHHcC-HHHHHHHHHHHHH
Q 046719 574 EDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS-LRTYHPLLSGCIREG-IVAVEKLFNEMLQ 651 (808)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~-~~~a~~~~~~~~~ 651 (808)
...+++..+. ....+..|. ..++..+...+...| +++|.+.+++.++
T Consensus 167 ~~~~~~al~~-------------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 167 VDFYEENLSL-------------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHHHH-------------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444443220 000010111 223444444455555 5555555555543
Q ss_pred CCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 652 INL-VPD----LLVYNALIHCYAEHGDVQKALVLHSEMVDQ----GIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 652 ~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
... .++ ...+..++..|...|++++|...+++..+. +..+. ..++..++..+...|++++|..+++++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 100 111 346778888899999999999999888752 11111 34778889999999999999999998765
Q ss_pred CCC-CCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHCCC----C-CCHHHHHHHHHHHHhcCChh
Q 046719 722 KGL-IPK----ADTYNILVKGYCNLKDFGGAYIWYREMFENGF----I-PSFCIYNELTNGLKQEGKLK 780 (808)
Q Consensus 722 ~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-~~~~~~~~l~~~l~~~g~~~ 780 (808)
... .++ ..++..++.++...|++++|..+++++++... . ....++..++..+...|+..
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 211 112 45677889999999999999999999876411 1 12566778888888888763
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.3e-13 Score=136.21 Aligned_cols=274 Identities=15% Similarity=0.107 Sum_probs=171.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcc----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHH
Q 046719 491 INWLCKDCKLLEAEIVLKDMENRGVLPN----AQIYNMLIDGSCTMGRIKDAFKFFDEMVKR----EMG-PTLVTFNALI 561 (808)
Q Consensus 491 l~~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~ 561 (808)
...+...|++++|...|+++.+.... + ...+..+...+...|++++|+..+++.+.. +.. ....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 34445555555555555555543211 1 234555566666666666666666655432 111 1244556666
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCC--------------------HHHHHHHHHHHH
Q 046719 562 NGLCKKGRVMEAEDMLPQITSSGL-NPD----VITYNSLISGYSSLGS--------------------SQKCLELYENMK 616 (808)
Q Consensus 562 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~ 616 (808)
..+...|++++|...+++..+... .++ ..++..+...|...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 667777777777777766544100 011 2356666666766666 555555554433
Q ss_pred HCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC
Q 046719 617 KLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQ----GIRPD 692 (808)
Q Consensus 617 ~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~pd 692 (808)
. +..... ........+..+...+...|++++|.+.++++.+. +..+.
T Consensus 171 ~---------------------------~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 221 (338)
T 3ro2_A 171 S---------------------------LVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA 221 (338)
T ss_dssp H---------------------------HHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred H---------------------------HHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHH
Confidence 2 111110 00112346777888888899999999999888753 11111
Q ss_pred -HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC-----C
Q 046719 693 -KMTYNSLIFGHLREGKLSEVKELVNDMKVKGL-IPK----ADTYNILVKGYCNLKDFGGAYIWYREMFENGFI-----P 761 (808)
Q Consensus 693 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~ 761 (808)
..++..++..+...|++++|..+++++.+... .++ ..++..++.++...|++++|..+++++++.... .
T Consensus 222 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 301 (338)
T 3ro2_A 222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG 301 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH
Confidence 22678889999999999999999998764210 111 456778899999999999999999998764221 1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 046719 762 SFCIYNELTNGLKQEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 762 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 794 (808)
....+..++.++.+.|++++|..+++++++..+
T Consensus 302 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 302 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 145778899999999999999999999987654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-12 Score=136.94 Aligned_cols=283 Identities=14% Similarity=0.088 Sum_probs=196.3
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-
Q 046719 481 KPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPN---AQIYNMLIDGSCTMGRIKDAFKFFDEMVKR----EMGP- 552 (808)
Q Consensus 481 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~- 552 (808)
......+......+...|++++|...|+++.+.+.... ..++..+...+...|++++|+..+++++.. +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34455666677778888888888888888877533211 246777778888888888888888876543 1111
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCC--------------------HHH
Q 046719 553 TLVTFNALINGLCKKGRVMEAEDMLPQITSSGL-NPD----VITYNSLISGYSSLGS--------------------SQK 607 (808)
Q Consensus 553 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~ 607 (808)
...++..+...|...|++++|...+++..+... .++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 244566777778888888888888877764210 011 2356666666666666 444
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 046719 608 CLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVP-DLLVYNALIHCYAEHGDVQKALVLHSEMVD 686 (808)
Q Consensus 608 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 686 (808)
|...+++..+ ++.. .+..+ ....+..+...|...|++++|+..++++.+
T Consensus 166 A~~~~~~al~---------------------------~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 166 AVDFYEENLS---------------------------LVTA---LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHHHH---------------------------HHHH---TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------------------HHHh---ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444333322 1111 11111 235778889999999999999999999886
Q ss_pred C----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 687 Q----GIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVKGL-IPK----ADTYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 687 ~----g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
. +..+. ..++..++..+...|++++|..+++++.+... .++ ..++..++.++...|++++|..+++++++
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3 11111 23788999999999999999999999865210 111 45788999999999999999999999987
Q ss_pred CCCCC-C----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 757 NGFIP-S----FCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 757 ~~~~~-~----~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
..... + ...+..++.++...|++++|..+++++++..
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 42221 1 5678899999999999999999999988754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=9e-13 Score=133.89 Aligned_cols=250 Identities=15% Similarity=0.149 Sum_probs=156.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C
Q 046719 518 NAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR-------EMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSS------G 584 (808)
Q Consensus 518 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~ 584 (808)
+..++..+...+...|++++|+.+++++++. ..+....++..+...|...|++++|...++++... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666777777777777777777777652 12223455666777777777777777777776642 1
Q ss_pred CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 046719 585 LNP-DVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNA 663 (808)
Q Consensus 585 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 663 (808)
-.| ...++..+...|...|++++|...++++.+. ..+......+.....+..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---------------------------~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI---------------------------REKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---------------------------HHHHHCTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH---------------------------HHHhcCCCChHHHHHHHH
Confidence 112 2456777777777888888888877776542 111100111122456777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHC-------CCCCC--
Q 046719 664 LIHCYAEHGDVQKALVLHSEMVDQ------GIRPDK-MTYNSLIFGHLREGKLSEVKELVNDMKVK-------GLIPK-- 727 (808)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~~~~~------g~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~p~-- 727 (808)
++..+...|++++|++.++++.+. +..|+. .++..++.++...|++++|..+++++.+. ...+.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 888888889999999888888763 223433 36788888899999999999988888752 11111
Q ss_pred -----HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 728 -----ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 728 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
...+..+...+...+.+.+|...++++....+. ....+..++.+|.+.|++++|..+++++++..++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 222334445556677888888888888765544 6788899999999999999999999999886554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-11 Score=121.66 Aligned_cols=234 Identities=13% Similarity=0.074 Sum_probs=114.9
Q ss_pred hhHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHH
Q 046719 519 AQIYNMLIDGSCTM----GRI----KDAFKFFDEMVKREMGPTLVTFNALINGLCK-------KGRV-------MEAEDM 576 (808)
Q Consensus 519 ~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~ 576 (808)
...|...++...+. ++. ++|+..|++++.. .+.+...|..++..+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 44566666654443 233 5677777777764 23456667666666543 3554 666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC-HH-hHHHHHHHHHHcC-HHHHHHHHHHHHHCC
Q 046719 577 LPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS-LR-TYHPLLSGCIREG-IVAVEKLFNEMLQIN 653 (808)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~~-~~~a~~~~~~~~~~~ 653 (808)
|++.++.-.+.+...|..++..+...|++++|..+|+++.+. .|+ .. .|..+...+.+.| .++|.++|++.++..
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 666665211223446666666666666666666666666652 332 21 4444444444444 555555555554432
Q ss_pred CCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC-CCC--CH
Q 046719 654 LVPDLLVYNALIHCYA-EHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKG-LIP--KA 728 (808)
Q Consensus 654 ~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p--~~ 728 (808)
+.+...|...+.... ..|++++|.++|+++++. .| +...|..++..+.+.|++++|..+|+++++.. +.| ..
T Consensus 165 -p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 165 -RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp -TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred -CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 122222222222211 134555555555554442 22 23344444444445555555555555544421 122 23
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
..|..++..+.+.|+.++|..+++++++..
T Consensus 242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 242 EIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 344444444444455555555555544443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-12 Score=139.42 Aligned_cols=193 Identities=9% Similarity=-0.056 Sum_probs=134.1
Q ss_pred CHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 588 DVITYNSLISGYSSLGSS-QKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALI 665 (808)
Q Consensus 588 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 665 (808)
+...|..+...|...|++ ++|+..|++..+.. +.+...+..+...+...| +++|.+.|+++++. .|+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 344555555555555555 55555555555431 223445555555555555 56666666665553 35556667777
Q ss_pred HHHHcc---------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc--------CCHhHHHHHHHHHHHCCCCC-
Q 046719 666 HCYAEH---------GDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLRE--------GKLSEVKELVNDMKVKGLIP- 726 (808)
Q Consensus 666 ~~~~~~---------g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~g~~p- 726 (808)
.+|... |++++|++.|+++++. .| +...|..++.+|... |++++|+..++++++ +.|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~ 253 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK--VDRK 253 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH--HCGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH--hCCC
Confidence 777777 8888888888888874 44 455788888888887 888888888888877 345
Q ss_pred ---CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 046719 727 ---KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSE 788 (808)
Q Consensus 727 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~ 788 (808)
+...|..++.+|...|++++|...|+++++..+. +...+..++.++...|++++|+..+.+
T Consensus 254 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 254 ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5777888888888888888888888888887766 777888888888888888888865543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-12 Score=137.49 Aligned_cols=282 Identities=14% Similarity=0.086 Sum_probs=173.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 046719 416 TFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNV----KTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLI 491 (808)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 491 (808)
.+..+...+...|++++|+..++++.+.... +. ..+..+...|...|++++|...+++.....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------ 116 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA------------ 116 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------------
Confidence 3444455556666666666666666654222 22 345555555666666666666655543310
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC-CCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHH
Q 046719 492 NWLCKDCKLLEAEIVLKDMENRG-VLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR----E-MGPTLVTFNALINGLC 565 (808)
Q Consensus 492 ~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~ 565 (808)
...+ ......++..+...+...|++++|+..++++++. + .+....++..+...|.
T Consensus 117 -------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 117 -------------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp -------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -------------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 0000 0112344555666666666666666666665542 1 1112445666667777
Q ss_pred hcCC-----------------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC
Q 046719 566 KKGR-----------------VMEAEDMLPQITSS----GLNP-DVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS 623 (808)
Q Consensus 566 ~~g~-----------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 623 (808)
..|+ +++|...+++..+. +..+ ...++..+...|...|++++|+..+++..+.. ++
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~ 255 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA--RE 255 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--Hh
Confidence 7777 67777666665431 1011 12466677777778888888888777765420 00
Q ss_pred HHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----CCC-CHHHHHH
Q 046719 624 LRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQG----IRP-DKMTYNS 698 (808)
Q Consensus 624 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~p-d~~~~~~ 698 (808)
.+ ........+..++..|...|++++|+..++++.+.. ..+ ...++..
T Consensus 256 -------------~~--------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 308 (411)
T 4a1s_A 256 -------------FG--------------DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYS 308 (411)
T ss_dssp -------------HT--------------CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------cC--------------CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00 000012467778889999999999999999887631 011 1347888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 699 LIFGHLREGKLSEVKELVNDMKVKG----LIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 699 l~~~~~~~g~~~~A~~~~~~~~~~g----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
++..+...|++++|..+++++++.. ..+ ...++..++.++...|++++|..+++++++..
T Consensus 309 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 309 LGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999999999999999999986521 111 14577889999999999999999999999764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-12 Score=132.66 Aligned_cols=233 Identities=9% Similarity=0.040 Sum_probs=150.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--C---Cc-CHHhHHHH
Q 046719 562 NGLCKKGRVMEAEDMLPQITSSGL-NPD----VITYNSLISGYSSLGSSQKCLELYENMKKLG--I---KP-SLRTYHPL 630 (808)
Q Consensus 562 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~---~p-~~~~~~~l 630 (808)
..+...|++++|...+++..+.-. .++ ..+|..+...|...|++++|+..+++..+.. . .+ ...++..+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 344455555555555555543200 011 2345555555556666666666655554320 0 00 12344455
Q ss_pred HHHHHHcC-HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHH
Q 046719 631 LSGCIREG-IVAVEKLFNEMLQI----NLVP-DLLVYNALIHCYAEHGDVQKALVLHSEMVDQ----GIRPD-KMTYNSL 699 (808)
Q Consensus 631 ~~~~~~~~-~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~pd-~~~~~~l 699 (808)
...+...| +++|.+.+++.++. +..+ ...++..++.+|...|++++|++.+++..+. +..|+ ..++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 55555666 66666666655542 1011 1247788999999999999999999998872 23243 3478899
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHccCC---hhHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 046719 700 IFGHLREGKLSEVKELVNDMKVKGL---IPK-ADTYNILVKGYCNLKD---FGGAYIWYREMFENGFIP-SFCIYNELTN 771 (808)
Q Consensus 700 ~~~~~~~g~~~~A~~~~~~~~~~g~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~~l~~ 771 (808)
+..+...|++++|..+++++.+... .|. ...+..+...+...|+ +++|+.++++. +..| ....+..++.
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHH
Confidence 9999999999999999999865210 121 2335678888899999 78888888776 2222 3557778999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCC
Q 046719 772 GLKQEGKLKEAQILCSEISIVGKDAW 797 (808)
Q Consensus 772 ~l~~~g~~~~A~~~~~~~~~~~~~~~ 797 (808)
.|...|++++|..+++++++...+-.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~~~~i~ 373 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQVRQLIQ 373 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTSCS
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999987654433
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-10 Score=116.83 Aligned_cols=184 Identities=11% Similarity=0.091 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHccCCHHHHHHHH
Q 046719 606 QKCLELYENMKKLGIKP-SLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPD-LL-VYNALIHCYAEHGDVQKALVLH 681 (808)
Q Consensus 606 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~ 681 (808)
++|..+|++.++. +.| +...|..+...+...| +++|.++|+++++. .|+ .. .|..++..+.+.|++++|.++|
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4455555554431 122 2334444444444444 55555555554442 221 11 4444444444445555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH-hcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCC-
Q 046719 682 SEMVDQGIRPDKMTYNSLIFGHL-REGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENG- 758 (808)
Q Consensus 682 ~~~~~~g~~pd~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 758 (808)
+++++.. +++...|...+.... ..|++++|..+|+++++. .| +...|..++..+.+.|++++|..+|+++++..
T Consensus 158 ~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 234 (308)
T 2ond_A 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence 5554421 112222322222211 134555555555554442 22 34444444444444555555555555554431
Q ss_pred CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 759 FIP--SFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 759 ~~~--~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
..| ....|..++..+.+.|+.++|..+++++.+..|+
T Consensus 235 l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 111 2334444444444455555555555555544444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.8e-11 Score=110.99 Aligned_cols=167 Identities=14% Similarity=0.086 Sum_probs=113.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 046719 553 TLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLS 632 (808)
Q Consensus 553 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 632 (808)
+..+|..+...|...|++++|++.|++.++.. +-+..+|..+..+|...|++++|+..+.....
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--------------- 67 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--------------- 67 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---------------
Confidence 45556666666666666666666666665532 22345555555555566666665555555543
Q ss_pred HHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhH
Q 046719 633 GCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSE 711 (808)
Q Consensus 633 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~ 711 (808)
.. +.+...+..+...+...++++.|...+++..+. .| +...+..++.++...|++++
T Consensus 68 -------------------~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~ 125 (184)
T 3vtx_A 68 -------------------LD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDK 125 (184)
T ss_dssp -------------------HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred -------------------cC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchh
Confidence 22 334556666677777788888888888888774 34 45577788888888888888
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 712 VKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 712 A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
|++.++++++ +.| +..+|..++.+|.+.|++++|+..|+++++.+|
T Consensus 126 A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 126 AIEAYEKTIS--IKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHH--hcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 8888888877 445 567788888888888888888888888887643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-11 Score=127.22 Aligned_cols=276 Identities=14% Similarity=0.042 Sum_probs=136.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC---HhhHHHHHHHHHhcCChHHHHHHHHHhhhC----CCC-CChhhHH
Q 046719 137 INVLLECLVRCNQYDRALDLFDEIVCMGFRPD---KFTYGKAVQAAVKIGDLKRACEIFDGMEKS----RTR-PNVFVYN 208 (808)
Q Consensus 137 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~ 208 (808)
+......+...|++++|...|+++++..+... ...+..+...+...|++++|...++++.+. +.. ....++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 44455566666666666666666665533311 244555556666666666666666654432 111 1234555
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------hhHHHHHHH
Q 046719 209 VLISGFCKEKKIRDAEKLFDEMCQRKL-VPT----RVTYNTLVDGYCKVGE--------------------FEKVSALRE 263 (808)
Q Consensus 209 ~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~ 263 (808)
.+...+...|++++|...|++..+... .++ ..++..+...|...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 666666666666666666665543210 011 2245555566666666 555555555
Q ss_pred HHHhC----CC-CcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhCCChHHHHHHHH
Q 046719 264 RMKRD----KV-EVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFD-PD----GFTYSMLFDGYSKCGDGEGVMALYE 333 (808)
Q Consensus 264 ~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~ 333 (808)
+.... +. ......+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44321 00 011224444555555555555555555554432000 00 1133344444444444444444444
Q ss_pred HHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--
Q 046719 334 ELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLV-PDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGL-- 410 (808)
Q Consensus 334 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-- 410 (808)
+...... ..+.. ....++..+...|...|++++|...+++..+...
T Consensus 248 ~al~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 248 KTLLLAR-------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-------------------------------hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 4322100 00000 0133455566666666666666666666544210
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 046719 411 ---APNCITFNTLIDKFCELGEMDKAEEWVKRMLEK 443 (808)
Q Consensus 411 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 443 (808)
.....++..+...+...|++++|...+++..+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 011335566667777777777777777776654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-11 Score=137.83 Aligned_cols=165 Identities=15% Similarity=0.080 Sum_probs=129.9
Q ss_pred HHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 046719 624 LRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-KMTYNSLIF 701 (808)
Q Consensus 624 ~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~ 701 (808)
..+++.+...+...| +++|.+.|++.++.. +.+...|+.+..+|.+.|++++|++.|+++++ +.|+ ...|..++.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 344555555555555 566666666655542 33567788888889999999999999999888 4564 458888999
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 046719 702 GHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLK 780 (808)
Q Consensus 702 ~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 780 (808)
++...|++++|++.++++++ +.| +...|..++.+|.+.|++++|+..|+++++..|. +...+..++.+|...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 99999999999999999888 556 4778888999999999999999999999988777 7888889999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 046719 781 EAQILCSEISIVGK 794 (808)
Q Consensus 781 ~A~~~~~~~~~~~~ 794 (808)
+|.+.++++++..+
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99988888876543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-10 Score=122.09 Aligned_cols=233 Identities=12% Similarity=0.045 Sum_probs=129.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCCc-chhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC----CCHHHHHHH
Q 046719 492 NWLCKDCKLLEAEIVLKDMENR----GVLP-NAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR--EMG----PTLVTFNAL 560 (808)
Q Consensus 492 ~~~~~~~~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~~~~l 560 (808)
..+...|++++|...|++..+. +..+ ...++..+...+...|++++|+..+++.++. ... ....+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3445556666666666555442 1111 2234555555666666666666666555442 000 012344445
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 046719 561 INGLCKKGRVMEAEDMLPQITSSGL-NPD----VITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCI 635 (808)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 635 (808)
...|...|++++|...+++..+... .++ ..++..+...|...|++++|+..|++..+.
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~----------------- 253 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV----------------- 253 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------------
Confidence 5555555555555555555443100 001 123444455555555555555555444331
Q ss_pred HcCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC---CCCC-HHHHHHHHHHHHhcCC--
Q 046719 636 REGIVAVEKLFNEMLQINL-VPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQG---IRPD-KMTYNSLIFGHLREGK-- 708 (808)
Q Consensus 636 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~~pd-~~~~~~l~~~~~~~g~-- 708 (808)
..+.+. +....++..++..|.+.|++++|...+++..+.. -.|. ...+..++..+...|+
T Consensus 254 -------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 320 (383)
T 3ulq_A 254 -------------FEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEE 320 (383)
T ss_dssp -------------HHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHH
T ss_pred -------------HHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 000122 2234567778888888888888888888877531 0122 2245678888888888
Q ss_pred -HhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 709 -LSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 709 -~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
+++|+.++++. +..| ....+..++..|...|++++|..+++++++.
T Consensus 321 ~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 321 AIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 67777777665 2233 2445678888888889999998888888763
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-11 Score=131.31 Aligned_cols=210 Identities=13% Similarity=-0.015 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 046719 536 KDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRV-MEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYEN 614 (808)
Q Consensus 536 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 614 (808)
++++..++..... .+.+...+..+...+...|++ ++|++.|++.++.. +.+...|..+...|...|++++|...|++
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444443332 122445555555555555555 55555555555432 12344555555555555555555555555
Q ss_pred HHHCCCCcCHHhHHHHHHHHHHc---------C-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--------CCHHH
Q 046719 615 MKKLGIKPSLRTYHPLLSGCIRE---------G-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEH--------GDVQK 676 (808)
Q Consensus 615 ~~~~~~~p~~~~~~~l~~~~~~~---------~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 676 (808)
..+. .|+...+..+...+... | +++|.+.++++++.. +.+...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 5543 34445555555555555 5 666666666666643 44567777788888777 88999
Q ss_pred HHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHH
Q 046719 677 ALVLHSEMVDQGIRP----DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWY 751 (808)
Q Consensus 677 A~~~~~~~~~~g~~p----d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 751 (808)
|++.|+++++. .| +...|..++.+|...|++++|.+.++++.+ +.| +...+..+..++...|++++|++.+
T Consensus 240 A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 240 ALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998883 45 556888899999999999999999999887 445 4667888888888888888888765
Q ss_pred HHH
Q 046719 752 REM 754 (808)
Q Consensus 752 ~~~ 754 (808)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-11 Score=110.72 Aligned_cols=168 Identities=14% Similarity=0.037 Sum_probs=134.6
Q ss_pred HHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046719 627 YHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLR 705 (808)
Q Consensus 627 ~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~ 705 (808)
+..+...+...| +++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+. .+.+...+..++..+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-APDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHH
Confidence 334444455555 666666666655432 345677888888899999999999999999885 23356688889999999
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 046719 706 EGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQIL 785 (808)
Q Consensus 706 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~ 785 (808)
.|++++|.++++++.+.. +.+...+..++.++...|++++|..+++++++..+. +...+..++.++...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988742 346778889999999999999999999999988766 788999999999999999999999
Q ss_pred HHHHHHcCCCCCc
Q 046719 786 CSEISIVGKDAWT 798 (808)
Q Consensus 786 ~~~~~~~~~~~~~ 798 (808)
++++++..|++..
T Consensus 167 ~~~~~~~~~~~~~ 179 (186)
T 3as5_A 167 FKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHCCCG
T ss_pred HHHHHHcCCCchh
Confidence 9999988877655
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.2e-11 Score=113.48 Aligned_cols=199 Identities=13% Similarity=0.009 Sum_probs=143.4
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 587 PDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALI 665 (808)
Q Consensus 587 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 665 (808)
.|+..+......+...|++++|+..|++..+...+++...+..+...+...| +++|.+.+++.++.. +.+...+..++
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 3567788888888888999999999988887543266666666777777778 888888888888753 33556777888
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCC-CH-------HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC---HHHHHHH
Q 046719 666 HCYAEHGDVQKALVLHSEMVDQGIRP-DK-------MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK---ADTYNIL 734 (808)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~~~~~g~~p-d~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l 734 (808)
.+|...|++++|++.+++.++. .| +. ..|..++..+...|++++|++.++++++ +.|+ ...|..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHH
Confidence 8888888888888888888873 34 33 3477777888888888888888888877 4554 4566777
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 735 VKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 735 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+.++...| ...++++...+.. +...+... .....|.+++|+..++++++..|++..
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLASS-NKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHH-----HHHHHHHHhcccC-CHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 77775543 3445555555433 33333332 334456679999999999999998876
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.4e-11 Score=123.29 Aligned_cols=168 Identities=15% Similarity=0.109 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC------C-C
Q 046719 135 DSINVLLECLVRCNQYDRALDLFDEIVCM-------GFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKS------R-T 200 (808)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~ 200 (808)
.++..++..+...|++++|..+|+++.+. ........+..+...+...|++++|...|+++.+. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555555555555555555555555442 11123344455555555555555555555554432 1 1
Q ss_pred CCChhhHHHHHHHHHccCCHhHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----
Q 046719 201 RPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQR------KL-VPTRVTYNTLVDGYCKVGEFEKVSALRERMKRD----- 268 (808)
Q Consensus 201 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----- 268 (808)
.....++..+...|...|++++|...|+++.+. +. .....++..+...|...|++++|...++++...
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 112344555555666666666666666555432 11 112334555555566666666666666555442
Q ss_pred -CCCc-CHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 269 -KVEV-SLVMFNSLLGGFCKAKRMEEAKSVCKEMEA 302 (808)
Q Consensus 269 -~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 302 (808)
+..| ...++..+...|...|++++|...|+++.+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 223445555555555555555555555543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.1e-10 Score=117.66 Aligned_cols=226 Identities=7% Similarity=-0.012 Sum_probs=147.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--C---Cc-CHHhHHHHH
Q 046719 563 GLCKKGRVMEAEDMLPQITSSGL-NPD----VITYNSLISGYSSLGSSQKCLELYENMKKLG--I---KP-SLRTYHPLL 631 (808)
Q Consensus 563 ~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~---~p-~~~~~~~l~ 631 (808)
.+...|++++|...|++..+... .++ ..++..+...|...|++++|+..+++..+.. . .+ ...++..+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34555666666666666554210 011 2345555666666666666666666555320 0 11 123445555
Q ss_pred HHHHHcC-HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 046719 632 SGCIREG-IVAVEKLFNEMLQI----NLVP-DLLVYNALIHCYAEHGDVQKALVLHSEMVD-----QGIRPDKMTYNSLI 700 (808)
Q Consensus 632 ~~~~~~~-~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~pd~~~~~~l~ 700 (808)
..+...| +++|.+.+++.++. +..+ ...+++.++.+|...|++++|++.+++.++ . .+....++..++
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV-PDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHHH
Confidence 5566666 66666666665542 1111 135677888999999999999999999887 3 222345788999
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHccCC---hhHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 046719 701 FGHLREGKLSEVKELVNDMKVKGL---IPK-ADTYNILVKGYCNLKD---FGGAYIWYREMFENGFIP-SFCIYNELTNG 772 (808)
Q Consensus 701 ~~~~~~g~~~~A~~~~~~~~~~g~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 772 (808)
..+.+.|++++|..++++..+... .|. ...+..+...+...|+ +++|+.++++. +..| ....+..++..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHH
Confidence 999999999999999999876321 122 3445677777778888 78888887763 2222 34567789999
Q ss_pred HHhcCChhHHHHHHHHHHHc
Q 046719 773 LKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 773 l~~~g~~~~A~~~~~~~~~~ 792 (808)
|...|++++|..+++++++.
T Consensus 346 y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-09 Score=114.37 Aligned_cols=299 Identities=9% Similarity=-0.004 Sum_probs=185.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchh----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHHH
Q 046719 488 GSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQ----IYNMLIDGSCTMGRIKDAFKFFDEMVKREM-GPTL----VTFN 558 (808)
Q Consensus 488 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~ 558 (808)
......+...|++++|...+++........+.. ++..+...+...|++++|...+++...... ..+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455667888888988888877653222221 456666777888888888888888765311 1122 2355
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC--c--CHHhH
Q 046719 559 ALINGLCKKGRVMEAEDMLPQITSS----GLN--PD-VITYNSLISGYSSLGSSQKCLELYENMKKLGIK--P--SLRTY 627 (808)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p--~~~~~ 627 (808)
.+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6677788888888888888887652 211 22 345666777788888888888888887754211 1 12345
Q ss_pred HHHHHHHHHcC-HHHHHHHHHHHHHCCCCC-C-HHHHH----HHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHH
Q 046719 628 HPLLSGCIREG-IVAVEKLFNEMLQINLVP-D-LLVYN----ALIHCYAEHGDVQKALVLHSEMVDQGIRPD---KMTYN 697 (808)
Q Consensus 628 ~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~-~-~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd---~~~~~ 697 (808)
..+...+...| +++|...+++.......+ . ..... ..+..+...|++++|...+++..+....+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 55666667777 888888887776531111 1 11111 233446677888888888877765321111 12456
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 698 SLIFGHLREGKLSEVKELVNDMKVK----GLIPKA-DTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNG 772 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 772 (808)
.++..+...|++++|...++++.+. |..++. ..+..++.++...|++++|...++++++.... ......
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~------~g~~~~ 331 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR------TGFISH 331 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------HCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc------ccHHHH
Confidence 6777778888888888888776542 211122 25556677777788888888888887765321 112334
Q ss_pred HHhcCChhHHHHHHHHHHHcCC
Q 046719 773 LKQEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 773 l~~~g~~~~A~~~~~~~~~~~~ 794 (808)
+...| +....++++.....+
T Consensus 332 ~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 332 FVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHcc--HHHHHHHHHHHhCCC
Confidence 44555 566777777777665
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.8e-10 Score=108.40 Aligned_cols=208 Identities=11% Similarity=-0.025 Sum_probs=163.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 046719 552 PTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLL 631 (808)
Q Consensus 552 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 631 (808)
.++..+......+...|++++|...|++.++....++...+..+..++...|++++|+..|++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46788888999999999999999999999986543677788789999999999999999999999853 23466788888
Q ss_pred HHHHHcC-HHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--H-HHHHHHH
Q 046719 632 SGCIREG-IVAVEKLFNEMLQINLVPDL-------LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD--K-MTYNSLI 700 (808)
Q Consensus 632 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd--~-~~~~~l~ 700 (808)
..+...| +++|.+.+++.++.. +.+. ..|..+...+...|++++|++.|+++++ +.|+ . ..+..++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 8899999 999999999999864 3344 4588888999999999999999999998 5676 3 4788888
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 701 FGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNG 772 (808)
Q Consensus 701 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 772 (808)
.++...| ..+++++...+ ..+...+.... ....+.+++|+.+++++++..|. +..+...+...
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHH
Confidence 8887654 44556666542 23344443333 34567899999999999998776 66666655544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-09 Score=114.10 Aligned_cols=160 Identities=11% Similarity=-0.003 Sum_probs=66.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcCHh----hHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-CC----hhhHHHHHH
Q 046719 142 ECLVRCNQYDRALDLFDEIVCMGFRPDKF----TYGKAVQAAVKIGDLKRACEIFDGMEKSRTR-PN----VFVYNVLIS 212 (808)
Q Consensus 142 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~ 212 (808)
..+...|++++|...+++++......+.. +++.+...+...|++++|...+++....... .+ ..+++.+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 33444455555555555544432222211 2333334444455555555555444331000 01 112334444
Q ss_pred HHHccCCHhHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----cCHHHHHHHH
Q 046719 213 GFCKEKKIRDAEKLFDEMCQR----KLV--P-TRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVE----VSLVMFNSLL 281 (808)
Q Consensus 213 ~~~~~g~~~~A~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li 281 (808)
.+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... ....++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 455555555555555544331 110 1 1223334444555555555555555554432111 1123344444
Q ss_pred HHHHccCChhHHHHHHHHHH
Q 046719 282 GGFCKAKRMEEAKSVCKEME 301 (808)
Q Consensus 282 ~~~~~~g~~~~A~~~~~~m~ 301 (808)
..+...|++++|...+++..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555555543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=6e-10 Score=116.38 Aligned_cols=229 Identities=12% Similarity=0.015 Sum_probs=151.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--C---CC-CHHHHHH
Q 046719 526 IDGSCTMGRIKDAFKFFDEMVKRE-MGP----TLVTFNALINGLCKKGRVMEAEDMLPQITSSG--L---NP-DVITYNS 594 (808)
Q Consensus 526 i~~~~~~g~~~~A~~~~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~---~~-~~~~~~~ 594 (808)
...+...|++++|+..|+++.+.. ..+ ...++..+...|...|++++|...+++..+.. . .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 344556677777777777665431 011 13456666667777777777777777665410 0 11 1345666
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHC----CCCc-CHHhHHHHHHHHHHcC-HHHHHHHHHHHHHC----CCCCCHHHHHHH
Q 046719 595 LISGYSSLGSSQKCLELYENMKKL----GIKP-SLRTYHPLLSGCIREG-IVAVEKLFNEMLQI----NLVPDLLVYNAL 664 (808)
Q Consensus 595 l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~----~~~~~~~~~~~l 664 (808)
+...|...|++++|.+.|++..+. +..+ ...++..+...+...| +++|.+.+++.++. +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 777777777777777777766642 1111 1234556666677777 77787777777651 223336678889
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HhHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 046719 665 IHCYAEHGDVQKALVLHSEMVDQGI---RPD-KMTYNSLIFGHLREGK---LSEVKELVNDMKVKGLIPK-ADTYNILVK 736 (808)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~~~~~g~---~pd-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l~~ 736 (808)
+.+|.+.|++++|...+++..+... .|. ...+..+...+...|+ +.+|+.++++. +..|+ ...+..++.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHH
Confidence 9999999999999999999987421 122 2356677778888888 77777777762 22232 455678999
Q ss_pred HHHccCChhHHHHHHHHHHHC
Q 046719 737 GYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 737 ~~~~~g~~~~A~~~~~~~~~~ 757 (808)
.|...|++++|..+++++++.
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999998753
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-10 Score=126.87 Aligned_cols=162 Identities=18% Similarity=0.146 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 590 ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCY 668 (808)
Q Consensus 590 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 668 (808)
.+|+.|...|.+.|++++|++.|++.++.. +-+..++..+...+.+.| +++|.+.|++.++.+ +.+...|+.+..+|
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 445555555555555555555555555431 122445555555555555 555555555555542 34567888888889
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhH
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGG 746 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 746 (808)
.+.|++++|++.|+++++ +.|+ ...|+.++.+|...|++++|++.++++++ +.| +...+..++.++...|++++
T Consensus 88 ~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999988 4564 45888999999999999999999999888 556 46778889999999999999
Q ss_pred HHHHHHHHHHC
Q 046719 747 AYIWYREMFEN 757 (808)
Q Consensus 747 A~~~~~~~~~~ 757 (808)
|.+.++++++.
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99888888753
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.20 E-value=3.8e-09 Score=102.74 Aligned_cols=184 Identities=10% Similarity=-0.022 Sum_probs=120.0
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 046719 608 CLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINL-VPDLLVYNALIHCYAEHGDVQKALVLHSEMV 685 (808)
Q Consensus 608 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 685 (808)
|+..|++....+ .++..++..+..++...| +++|.+++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666665543 344555555666666667 7777777777766542 1345666777788888888888888888887
Q ss_pred HCCCCCC-----HHHHHHHHHH--HHhcC--CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 686 DQGIRPD-----KMTYNSLIFG--HLREG--KLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 686 ~~g~~pd-----~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
+ ..|| ..+...|+.+ ....| ++.+|..+|+++.+ -.|+..+...+..++.+.|++++|.+.++.+.+
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7 4562 3333344433 44444 78888888888766 345533333444477788888888888886665
Q ss_pred C----------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCch
Q 046719 757 N----------GFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWTN 799 (808)
Q Consensus 757 ~----------~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~ 799 (808)
. ++. ++.++..++.+....|+ +|.++++++.+..|++.-.
T Consensus 240 ~~p~~~~k~~~~p~-~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 240 DYYSVEQKENAVLY-KPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHTTTCHHHHSS-HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred hcccccccccCCCC-CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 3 233 56666666666666676 7888888888888877653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-10 Score=113.56 Aligned_cols=227 Identities=15% Similarity=0.091 Sum_probs=156.8
Q ss_pred HhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCc-CHHhHHHH
Q 046719 565 CKKGRVMEAEDMLPQITSS-------GLNPDVITYNSLISGYSSLGSSQKCLELYENMKKL------GIKP-SLRTYHPL 630 (808)
Q Consensus 565 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~l 630 (808)
...|++++|+.++++..+. ..+....++..+...|...|++++|+..++++.+. +..| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776541 11223567888999999999999999999998864 2222 35567778
Q ss_pred HHHHHHcC-HHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC------CCCCC-HHH
Q 046719 631 LSGCIREG-IVAVEKLFNEMLQI------NL-VPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQ------GIRPD-KMT 695 (808)
Q Consensus 631 ~~~~~~~~-~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~pd-~~~ 695 (808)
...+...| +++|.+.++++++. .. +.....+..++..|...|++++|+..++++++. +-.|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888888 99999999988764 11 223567888889999999999999999999874 11343 347
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHccCChhHHHH------HHHHHHHCCCCC
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVK-------GLIP-KADTYNILVKGYCNLKDFGGAYI------WYREMFENGFIP 761 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~p-~~~~~~~l~~~~~~~g~~~~A~~------~~~~~~~~~~~~ 761 (808)
+..++.++...|++++|..+++++.+. ...+ ....|..+.......+....+.. +++.... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999998752 1122 23344444444444444333332 2222111 1111
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 762 SFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 762 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
....+..++.+|...|++++|..+++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567889999999999999999999998764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.20 E-value=7.2e-10 Score=102.30 Aligned_cols=164 Identities=11% Similarity=-0.010 Sum_probs=109.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 046719 593 NSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEH 671 (808)
Q Consensus 593 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 671 (808)
..+...+...|++++|...++++.+. .+.+...+..+...+...| +++|.+.++++++.. +.+...+..++..+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 33344444444444444444444332 1223334444444444444 555555555554432 34566777788888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 046719 672 GDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWY 751 (808)
Q Consensus 672 g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 751 (808)
|++++|.+.++++.+. .+.+...+..++..+...|++++|..+++++.+.. +.+...+..++.++...|++++|..++
T Consensus 90 ~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999988875 23456678888889999999999999999988742 335778888899999999999999999
Q ss_pred HHHHHCCCC
Q 046719 752 REMFENGFI 760 (808)
Q Consensus 752 ~~~~~~~~~ 760 (808)
+++++..+.
T Consensus 168 ~~~~~~~~~ 176 (186)
T 3as5_A 168 KKANELDEG 176 (186)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHcCCC
Confidence 998876544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.19 E-value=9.4e-10 Score=95.30 Aligned_cols=133 Identities=17% Similarity=0.192 Sum_probs=115.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYC 739 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 739 (808)
.+..++..+...|++++|+.+++++.+.. +.+...+..++..+...|++++|..+++++.+.+ +.+...+..++.++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46778888999999999999999998852 3356688889999999999999999999998743 335778889999999
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 740 NLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 740 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
..|++++|..+++++.+..+. +...+..++.++...|++++|...+++++...|+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999999988765 7888999999999999999999999999988775
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=6.8e-11 Score=104.65 Aligned_cols=125 Identities=9% Similarity=-0.072 Sum_probs=61.9
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChh
Q 046719 668 YAEHGDVQKALVLHSEMVDQGIRPDK-MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFG 745 (808)
Q Consensus 668 ~~~~g~~~~A~~~~~~~~~~g~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~ 745 (808)
+...|++++|+..+++... ..|+. ..+..++..|.+.|++++|++.++++++ +.| +..+|..++.++.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCchH
Confidence 3344455555555555443 22322 2344455555555555555555555554 333 3444555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH-HHHHHHcCCCCC
Q 046719 746 GAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQIL-CSEISIVGKDAW 797 (808)
Q Consensus 746 ~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~-~~~~~~~~~~~~ 797 (808)
+|+..|+++++.+|. ++..+..++.+|.+.|++++|.+. ++++++..|++.
T Consensus 83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~ 134 (150)
T 4ga2_A 83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP 134 (150)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence 555555555555444 455555555555555555443332 355555555443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=6.5e-10 Score=111.15 Aligned_cols=214 Identities=12% Similarity=-0.003 Sum_probs=126.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCCHHHH
Q 046719 534 RIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSS----GLNPD-VITYNSLISGYSSLGSSQKC 608 (808)
Q Consensus 534 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A 608 (808)
++++|...|++. ...|...|++++|...|.+..+. |-.++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 55666777777777777766542 21111 34566666667777777777
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcc-CCHHHHHHHHHHHHH
Q 046719 609 LELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVP-DLLVYNALIHCYAEH-GDVQKALVLHSEMVD 686 (808)
Q Consensus 609 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 686 (808)
+..|++..+.. .. .|-.. -..+++.+..+|... |++++|+..|++.++
T Consensus 97 ~~~~~~Al~l~---------------~~---------------~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 97 VDSLENAIQIF---------------TH---------------RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHHHHHHHH---------------HH---------------TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------HH---------------cCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 77666665420 00 01000 123566677777775 888888888887776
Q ss_pred CCCCCC-------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHccCChhHHHHHHHH
Q 046719 687 QGIRPD-------KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA------DTYNILVKGYCNLKDFGGAYIWYRE 753 (808)
Q Consensus 687 ~g~~pd-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 753 (808)
. .|+ ..+++.++..+...|++++|+..++++.+....... ..|..++.++...|++++|+..+++
T Consensus 147 ~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 147 W--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp H--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred H--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 221 235677778888888888888888887763221111 1456677777778888888888888
Q ss_pred HHHCCCCCC----HHHHHHHHHHHH--hcCChhHHHHHHHHHHHcCC
Q 046719 754 MFENGFIPS----FCIYNELTNGLK--QEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 754 ~~~~~~~~~----~~~~~~l~~~l~--~~g~~~~A~~~~~~~~~~~~ 794 (808)
+++..|.-. ...+..++..+. ..+++++|+..+++++...|
T Consensus 225 al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 225 GQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp GGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 776543211 112334445443 45667777777777655443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.12 E-value=6e-10 Score=104.98 Aligned_cols=183 Identities=9% Similarity=-0.001 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHH-hHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 590 ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLR-TYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCY 668 (808)
Q Consensus 590 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 668 (808)
..+......+...|++++|+..|++..+. .|+.. .+.. . ... ..........+.+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~----~~~-------------~~~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T----NVD-------------KNSEISSKLATELALAY 64 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H----HSC-------------TTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h----hhc-------------chhhhhHHHHHHHHHHH
Confidence 34444555667788888888888888763 34322 2221 0 000 00001122334477778
Q ss_pred HccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCC--h
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKD--F 744 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~--~ 744 (808)
.+.|++++|+..|++.++. .| +...+..++.++...|++++|+..++++++ +.| +...|..++.+|...|+ .
T Consensus 65 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHH
Confidence 8888888888888888873 45 455788888888888888888888888877 455 46777788877766553 4
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 745 GGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 745 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+.+...++++. .+.|....+..++.++...|++++|+..++++++..|+...
T Consensus 141 ~~~~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 192 (208)
T 3urz_A 141 KKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEA 192 (208)
T ss_dssp HHHHHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHH
T ss_pred HHHHHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHH
Confidence 45555665554 23333345566677777788888888888888888876443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-09 Score=104.88 Aligned_cols=136 Identities=9% Similarity=-0.048 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---C-HHHHHHHHHHHHh--------cCCHhHHHHHHHHHHHCCCCC
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP---D-KMTYNSLIFGHLR--------EGKLSEVKELVNDMKVKGLIP 726 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---d-~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~g~~p 726 (808)
..+..++.+|.+.|++++|+..|+++++. .| + ...+..++.++.. .|++++|+..++++++. .|
T Consensus 53 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p 128 (261)
T 3qky_A 53 DAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YP 128 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--Cc
Confidence 34444444555555555555555555542 12 1 1234444455544 55555555555555442 22
Q ss_pred C-HHH-----------------HHHHHHHHHccCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------
Q 046719 727 K-ADT-----------------YNILVKGYCNLKDFGGAYIWYREMFENGFIP--SFCIYNELTNGLKQE---------- 776 (808)
Q Consensus 727 ~-~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~---------- 776 (808)
+ ... +..++.+|.+.|++++|+..|+++++..|.. ....+..++.+|...
T Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~ 208 (261)
T 3qky_A 129 NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQP 208 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhccc
Confidence 2 111 2567888888999999999999988876543 246788888888866
Q ss_pred CChhHHHHHHHHHHHcCCCCCc
Q 046719 777 GKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 777 g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
|++++|...++++++..|++..
T Consensus 209 ~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 209 ERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHHHHHHHCTTCTH
T ss_pred chHHHHHHHHHHHHHHCCCChH
Confidence 8889999999999998888764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-09 Score=109.02 Aligned_cols=228 Identities=17% Similarity=0.128 Sum_probs=161.1
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHHHHH
Q 046719 530 CTMGRIKDAFKFFDEMVKR-------EMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSS------GLNP-DVITYNSL 595 (808)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~l 595 (808)
...|++++|+..|++.++. ..+....++..+...|...|++++|...++++.+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777777652 22234667888999999999999999999998763 2122 34678899
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHC------CC-CcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHC------CCCC-CHHH
Q 046719 596 ISGYSSLGSSQKCLELYENMKKL------GI-KPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQI------NLVP-DLLV 660 (808)
Q Consensus 596 ~~~~~~~g~~~~A~~~~~~~~~~------~~-~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~~~ 660 (808)
...|...|++++|...|++..+. .. +....++..+...+...| +++|.+.++++++. ...| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998864 11 223566777888889999 99999999999874 1123 3567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC-------CCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHH--HC-C-CCC-C
Q 046719 661 YNALIHCYAEHGDVQKALVLHSEMVDQ-------GIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMK--VK-G-LIP-K 727 (808)
Q Consensus 661 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-g-~~p-~ 727 (808)
+..++.+|...|++++|...++++.+. ...+... .|..+.......+....+..+..... +. + ..| .
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999999999863 1223322 45455555554444333332221111 11 1 112 2
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 728 ADTYNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 728 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
..++..++.+|...|++++|..+++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456889999999999999999999998863
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=8.7e-10 Score=110.20 Aligned_cols=162 Identities=7% Similarity=-0.102 Sum_probs=119.6
Q ss_pred HHcC-HHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHH
Q 046719 635 IREG-IVAVEKLFNEMLQI----NLVPD-LLVYNALIHCYAEHGDVQKALVLHSEMVDQ----GIRPD-KMTYNSLIFGH 703 (808)
Q Consensus 635 ~~~~-~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~pd-~~~~~~l~~~~ 703 (808)
...| +++|.+.|.+.++. +.+++ ..+|+.+..+|.+.|++++|+..+++.++. |-... ..+++.++.+|
T Consensus 48 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~ 127 (292)
T 1qqe_A 48 RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEIL 127 (292)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3444 55555555544432 21111 457888999999999999999999998863 11111 24788999999
Q ss_pred Hhc-CCHhHHHHHHHHHHHCCCCC---C----HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH------HHHHHH
Q 046719 704 LRE-GKLSEVKELVNDMKVKGLIP---K----ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSF------CIYNEL 769 (808)
Q Consensus 704 ~~~-g~~~~A~~~~~~~~~~g~~p---~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l 769 (808)
... |++++|+..++++++ +.| + ..++..++.++.+.|++++|+..++++++..+.... ..+..+
T Consensus 128 ~~~lg~~~~A~~~~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 128 ENDLHDYAKAIDCYELAGE--WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHTTCCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHHH--HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 996 999999999999876 322 1 356889999999999999999999999997665332 157889
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 770 TNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 770 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+.++...|++++|...+++.++..|+...
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 99999999999999999999998887554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.2e-10 Score=100.28 Aligned_cols=133 Identities=13% Similarity=-0.018 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHH
Q 046719 639 IVAVEKLFNEMLQINLVP-DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELV 716 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~ 716 (808)
+++|.+.+.+.... .| +...+..+...|.+.|++++|++.|+++++ +.| +..+|..++.++...|++++|+..+
T Consensus 13 ~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 13 VERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp HHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 66666666666542 23 345667788999999999999999999999 456 5569999999999999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 717 NDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIW-YREMFENGFIPSFCIYNELTNGLKQEGK 778 (808)
Q Consensus 717 ~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 778 (808)
+++++ +.| +...|..++.+|.+.|++++|.+. ++++++..|. ++.++......+...|+
T Consensus 89 ~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 89 RRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 99998 566 578899999999999999887765 6899998877 88899888888888885
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.08 E-value=2.1e-07 Score=99.58 Aligned_cols=104 Identities=10% Similarity=0.067 Sum_probs=55.3
Q ss_pred HcC-CHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCC-HhHH
Q 046719 146 RCN-QYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKK-IRDA 223 (808)
Q Consensus 146 ~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 223 (808)
+.| +++.|+.+|++++.. -|. |+++.+..+|++.+.. .|++..|...+.-..+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 366777777776653 111 6777777777777663 3577777776666655542 3445
Q ss_pred HHHHHHHHhC-CCC-CCHHHHHHHHHHHH----hcCChhHHHHHHHHHHh
Q 046719 224 EKLFDEMCQR-KLV-PTRVTYNTLVDGYC----KVGEFEKVSALRERMKR 267 (808)
Q Consensus 224 ~~~~~~m~~~-~~~-p~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~ 267 (808)
..+|+..+.. |.. .+...|...+..+. .+|+.+.+..+|++.+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 5566655542 322 24455555555433 23455556666666654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.08 E-value=6.5e-09 Score=99.29 Aligned_cols=190 Identities=10% Similarity=0.012 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-cC-HHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCC-CH-HHHHH
Q 046719 589 VITYNSLISGYSSLGSSQKCLELYENMKKLGIK-PS-LRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVP-DL-LVYNA 663 (808)
Q Consensus 589 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~-~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~-~~-~~~~~ 663 (808)
...+..+...+...|++++|+..|+++.+.... |. ...+..+...+...| +++|.+.|+++++..... .. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555566677777777777777777753211 11 234555556666666 666777776666643111 11 13333
Q ss_pred HHHHHHc------------------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 046719 664 LIHCYAE------------------HGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGL 724 (808)
Q Consensus 664 l~~~~~~------------------~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 724 (808)
+..++.. .|++++|+..|+++++. .|+.. .+..+.... .+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----------HHHHHH-----
Confidence 3444432 34455555555555542 23222 111111000 000000
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 725 IPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPS--FCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 725 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
......++..+.+.|++++|+..|+++++..|... ...+..++.++.+.|++++|...++.+...+|+...
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 01123567888999999999999999999866522 367899999999999999999999999999988766
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-09 Score=92.24 Aligned_cols=107 Identities=14% Similarity=-0.004 Sum_probs=70.7
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHH
Q 046719 689 IRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIY 766 (808)
Q Consensus 689 ~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 766 (808)
+.|+.. .+...+..+.+.|++++|++.|+++++ +.| +...|..++.++.+.|++++|+..++++++.++. +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHH
Confidence 445433 566666677777777777777777666 334 4566666677777777777777777777766655 66667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 767 NELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 767 ~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
..++.++...|++++|+..++++++..|++..
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHH
Confidence 77777777777777777777777776666544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.2e-09 Score=120.76 Aligned_cols=144 Identities=11% Similarity=-0.067 Sum_probs=72.5
Q ss_pred HHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 046719 627 YHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHL 704 (808)
Q Consensus 627 ~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~ 704 (808)
+..+...+...| +++|.+.|+++++.+ +.+...|..+..+|...|++++|++.|+++++ +.| +...|..++.++.
T Consensus 436 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~ 512 (681)
T 2pzi_A 436 PLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLD--TFPGELAPKLALAATAE 512 (681)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHH
Confidence 333333344444 444444444444432 23344555555555555666666666655555 233 2335555555555
Q ss_pred hcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 705 REGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG 777 (808)
Q Consensus 705 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 777 (808)
+.|++++ ++.++++++ +.| +...|..++.++.+.|++++|+..|+++++.++. +...+..++.++...|
T Consensus 513 ~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 513 LAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH-FTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT-HHHHHHHHHHHTC---
T ss_pred HcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc-cHHHHHHHHHHHHccC
Confidence 5666555 555555555 233 3445555555555566666666666555554433 4455555555554433
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-09 Score=96.18 Aligned_cols=105 Identities=15% Similarity=0.058 Sum_probs=79.7
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHH
Q 046719 689 IRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIY 766 (808)
Q Consensus 689 ~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 766 (808)
+.|+.. .+..++..+.+.|++++|+..|+++++ +.| ++..|..++.++...|++++|+..|+++++..|. ++..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHH
Confidence 345433 677777888888888888888888777 445 5677778888888888888888888888877766 67777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 046719 767 NELTNGLKQEGKLKEAQILCSEISIVGKDA 796 (808)
Q Consensus 767 ~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 796 (808)
..++.+|.+.|++++|+..++++++..|+.
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 888888888888888888888888777654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.03 E-value=9.7e-09 Score=100.80 Aligned_cols=208 Identities=11% Similarity=0.000 Sum_probs=128.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CcC-HHh
Q 046719 552 PTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPD---VITYNSLISGYSSLGSSQKCLELYENMKKLGI-KPS-LRT 626 (808)
Q Consensus 552 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~~ 626 (808)
.+...+..+...+.+.|++++|+..|+++++... .+ ...+..+..+|...|++++|+..|++..+... .|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3566677777778888888888888888877531 12 45677777788888888888888888876421 111 233
Q ss_pred HHHHHHHHHH--------cC-HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 046719 627 YHPLLSGCIR--------EG-IVAVEKLFNEMLQINLVPD-LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTY 696 (808)
Q Consensus 627 ~~~l~~~~~~--------~~-~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~ 696 (808)
+..+...+.. .| +++|.+.|+++++.. |+ ......+ ..+..+... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH----HHHHH
Confidence 4444444444 45 556666665555532 21 1111111 111111000 00123
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHcc----------CChhHHHHHHHHHHHCCCCCC
Q 046719 697 NSLIFGHLREGKLSEVKELVNDMKVKGLIPK----ADTYNILVKGYCNL----------KDFGGAYIWYREMFENGFIPS 762 (808)
Q Consensus 697 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~ 762 (808)
..++..|...|++++|+..++++++. .|+ ...+..++.+|... |++++|+..++++++..|...
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 67788999999999999999998873 343 45678888888866 889999999999998766522
Q ss_pred --HHHHHHHHHHHHhcCChhHH
Q 046719 763 --FCIYNELTNGLKQEGKLKEA 782 (808)
Q Consensus 763 --~~~~~~l~~~l~~~g~~~~A 782 (808)
......+..++.+.|+.+++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 23444555555555554443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.03 E-value=2.4e-07 Score=99.13 Aligned_cols=101 Identities=11% Similarity=0.063 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCC-hHHHHHHHH
Q 046719 115 PSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGD-LKRACEIFD 193 (808)
Q Consensus 115 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~ 193 (808)
...|+.+|++....- |. |+++.+..+|++.+.. .|++..|..-+.-..+.+. .+....+|+
T Consensus 11 i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 11 LSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred hHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 666666666665421 11 7888888888888773 4578888887777666653 355667777
Q ss_pred HhhhC-CCC-CChhhHHHHHHHHH----ccCCHhHHHHHHHHHHhC
Q 046719 194 GMEKS-RTR-PNVFVYNVLISGFC----KEKKIRDAEKLFDEMCQR 233 (808)
Q Consensus 194 ~~~~~-~~~-~~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~ 233 (808)
.++.. |.. .+...|...+..+. ..|+++.+.++|++.+..
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 76653 432 35667777776543 245677888888888764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=6e-09 Score=115.27 Aligned_cols=151 Identities=13% Similarity=0.019 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 046719 603 GSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLH 681 (808)
Q Consensus 603 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 681 (808)
|++++|.+.|++..+.. +.+...+..+...+...| +++|.+.+++.++.. +.+...+..+..+|...|++++|++.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45555555555555421 122344444444444444 555555555555432 223444444555555555555555555
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcc---CChhHHHHHHHHHHH
Q 046719 682 SEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNL---KDFGGAYIWYREMFE 756 (808)
Q Consensus 682 ~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 756 (808)
++.++. .| +...+..++.++...|++++|.+.++++.+. .| +...+..++.++... |++++|...++++++
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 555442 22 2334445555555555555555555554442 22 234444455555555 555555555555554
Q ss_pred CCC
Q 046719 757 NGF 759 (808)
Q Consensus 757 ~~~ 759 (808)
.++
T Consensus 157 ~~p 159 (568)
T 2vsy_A 157 QGV 159 (568)
T ss_dssp HTC
T ss_pred cCC
Confidence 443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-07 Score=93.97 Aligned_cols=213 Identities=12% Similarity=0.032 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH----HHc---C-H
Q 046719 571 MEAEDMLPQITSSGLNP-DVITYNSLISGYSSLG--SSQKCLELYENMKKLGIKPSLRTYHPLLSGC----IRE---G-I 639 (808)
Q Consensus 571 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~---~-~ 639 (808)
++|+..++.++.. .| +...|+.-...+...+ ++++++.+++.+.... +-+..+|+.-...+ ... + +
T Consensus 50 ~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 4555555555543 22 2334554444444555 5555555555555432 22233333322222 222 3 5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HhH
Q 046719 640 VAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQ--KALVLHSEMVDQGIRPDKMTYNSLIFGHLREGK------LSE 711 (808)
Q Consensus 640 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~------~~~ 711 (808)
+++.++++++++.+ +.+...|+.-..++.+.|.++ ++++.++++++.. +-|...|+.-...+...|. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 56666666666543 445666666666666666666 7777777777642 2255566666666666665 677
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhH-HHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 046719 712 VKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGG-AYIWYREMFENG---FIPSFCIYNELTNGLKQEGKLKEAQILC 786 (808)
Q Consensus 712 A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~---~~~~~~~~~~l~~~l~~~g~~~~A~~~~ 786 (808)
+++++++++.. .| |...|+.+...+.+.|+..+ +..+.+++.+.+ +. ++..+..++.++.+.|+.++|.+++
T Consensus 205 El~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 205 ELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT-SSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 77777777663 34 56667777777766666443 444555555433 23 5666777777777777777777777
Q ss_pred HHHHH
Q 046719 787 SEISI 791 (808)
Q Consensus 787 ~~~~~ 791 (808)
+++.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77765
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.6e-09 Score=97.51 Aligned_cols=157 Identities=10% Similarity=-0.036 Sum_probs=115.3
Q ss_pred HHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcC
Q 046719 630 LLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFG-HLREG 707 (808)
Q Consensus 630 l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~-~~~~g 707 (808)
....+...| +++|...|++.++.. +.+...+..+..++...|++++|+..++++.+. .|+...+..+... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhc
Confidence 344455555 666666666655532 445677888888899999999999999988763 4444333333322 22333
Q ss_pred CHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 046719 708 KLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP-SFCIYNELTNGLKQEGKLKEAQIL 785 (808)
Q Consensus 708 ~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~g~~~~A~~~ 785 (808)
...+|+..++++++ ..| +...+..++.++...|++++|...|+++++..|.+ +...+..++.++...|+.++|...
T Consensus 89 ~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 89 AESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp TSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred ccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 44567888999887 456 57888899999999999999999999999887654 466888999999999999999999
Q ss_pred HHHHHH
Q 046719 786 CSEISI 791 (808)
Q Consensus 786 ~~~~~~ 791 (808)
+++.+.
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.01 E-value=9.3e-08 Score=93.01 Aligned_cols=186 Identities=9% Similarity=-0.006 Sum_probs=89.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 046719 538 AFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGL-NPDVITYNSLISGYSSLGSSQKCLELYENMK 616 (808)
Q Consensus 538 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 616 (808)
|+..|++.+..+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555554432 23344444555555555666666666555544332 1133445555555555556555555555555
Q ss_pred HCCCCc-----CHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 046719 617 KLGIKP-----SLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP 691 (808)
Q Consensus 617 ~~~~~p-----~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 691 (808)
+. .| +..+...+..+ .+......+++.+|..+|+++.+. .|
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea------------------------------~v~l~~g~~~~q~A~~~f~El~~~--~p 209 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAES------------------------------YIKFATNKETATSNFYYYEELSQT--FP 209 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHH------------------------------HHHHHHTCSTTTHHHHHHHHHHTT--SC
T ss_pred hc--CccccccchHHHHHHHHH------------------------------HHHHHhCCccHHHHHHHHHHHHHh--CC
Confidence 42 23 12222222222 111111223666666666666553 34
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-----CC---CC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVK-----GL---IP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+..+-..+..++.+.|++++|.+.++.+.+. .. .| |+.+...++.+....|+ +|.++++++.+..|.
T Consensus 210 ~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 210 TWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 4222223333566666666666666654431 00 13 34455444444445555 666666666665444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.8e-08 Score=92.07 Aligned_cols=175 Identities=14% Similarity=-0.001 Sum_probs=125.6
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----CHHHHHHHHH
Q 046719 608 CLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHG----DVQKALVLHS 682 (808)
Q Consensus 608 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 682 (808)
|++.|++..+. -+...+..+...+...+ +++|.+.|++..+.| +...+..|...|.. | ++++|++.|+
T Consensus 5 A~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 44555555543 24445555555555555 666666666666543 45566667777776 6 8999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHc----cCChhHHHHHHHH
Q 046719 683 EMVDQGIRPDKMTYNSLIFGHLR----EGKLSEVKELVNDMKVKGLI-PKADTYNILVKGYCN----LKDFGGAYIWYRE 753 (808)
Q Consensus 683 ~~~~~g~~pd~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 753 (808)
+..+.| +...+..|+..|.. .+++++|+.++++..+.|.. .++..+..|+..|.. .+++++|+.+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 998754 56677888888887 78899999999998875421 026778888888888 7889999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHHcCC
Q 046719 754 MFENGFIPSFCIYNELTNGLKQE-G-----KLKEAQILCSEISIVGK 794 (808)
Q Consensus 754 ~~~~~~~~~~~~~~~l~~~l~~~-g-----~~~~A~~~~~~~~~~~~ 794 (808)
+.+.+ .+...+..|+.+|... | +.++|..++++..+.+.
T Consensus 155 A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98872 2455778888888654 3 88999999999988764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=8.8e-09 Score=102.43 Aligned_cols=165 Identities=8% Similarity=-0.092 Sum_probs=131.8
Q ss_pred cCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH-HHHH
Q 046719 622 PSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMT-YNSL 699 (808)
Q Consensus 622 p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~-~~~l 699 (808)
.+...+..+...+...| +++|...|+++++.. +.+...+..++.++...|++++|...++++.+ ..|+... ....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHH
Confidence 33455555666677777 888888888877754 44677888899999999999999999999877 3566553 3344
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 046719 700 IFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP-SFCIYNELTNGLKQEG 777 (808)
Q Consensus 700 ~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~g 777 (808)
...+...++.++|+..++++++ ..| +...+..++.++...|++++|+..|+++++..|.. +...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 4457778888999999999888 445 57888999999999999999999999999987652 2778999999999999
Q ss_pred ChhHHHHHHHHHHH
Q 046719 778 KLKEAQILCSEISI 791 (808)
Q Consensus 778 ~~~~A~~~~~~~~~ 791 (808)
+.++|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999988764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-08 Score=96.52 Aligned_cols=129 Identities=11% Similarity=-0.067 Sum_probs=65.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 046719 662 NALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNL 741 (808)
Q Consensus 662 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 741 (808)
..++..+...|++++|+..|+++ +.|+...+..++.++...|++++|+..++++++.. +.+...+..++.++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 33444455555555555555544 23344455555555555555555555555555421 12344455555555555
Q ss_pred CChhHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 742 KDFGGAYIWYREMFENGFIP---------------SFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 742 g~~~~A~~~~~~~~~~~~~~---------------~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
|++++|+..++++++..+.. ....+..++.++...|++++|...+++++...|+
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 55555555555555543320 1145555555555555555555555555555544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-09 Score=95.35 Aligned_cols=101 Identities=15% Similarity=0.012 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGL 773 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 773 (808)
.+..++..+...|++++|+..|+++++ ..| +...|..++.++...|++++|+..|+++++.+|. ++..+..++.+|
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 555566666666666666666666655 233 4555666666666666666666666666665554 556666666666
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 774 KQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 774 ~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
...|++++|...+++++...|++..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 6666666666666666666555433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.5e-08 Score=95.32 Aligned_cols=161 Identities=12% Similarity=0.051 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHH----------------HHHHHHhcCChHHHHHHHHHhhhCCC
Q 046719 137 INVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGK----------------AVQAAVKIGDLKRACEIFDGMEKSRT 200 (808)
Q Consensus 137 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~~ 200 (808)
+...+..+...|++++|...|+++++..+. +...|.. +..++.+.|++++|+..|++.++..+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 334444555556666666666665554332 2333333 55555566666666666666555432
Q ss_pred CCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCcCHHHHH
Q 046719 201 RPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGE--FEKVSALRERMKRDKVEVSLVMFN 278 (808)
Q Consensus 201 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~ 278 (808)
. +...+..+..++...|++++|+..|++..+..+. +..+|..+...|...|+ .+.+...++.... ..|....+.
T Consensus 86 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~ 161 (208)
T 3urz_A 86 N-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARY 161 (208)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 2 4555556666666666666666666666554322 44555555555544432 2233333333321 112222222
Q ss_pred HHHHHHHccCChhHHHHHHHHHHH
Q 046719 279 SLLGGFCKAKRMEEAKSVCKEMEA 302 (808)
Q Consensus 279 ~li~~~~~~g~~~~A~~~~~~m~~ 302 (808)
....++...|++++|+..|++.++
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 233334445556666666665554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.6e-08 Score=85.93 Aligned_cols=129 Identities=14% Similarity=0.211 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHH
Q 046719 136 SINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFC 215 (808)
Q Consensus 136 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (808)
+|..++..+...|++++|..+|+++.+.++. +...+..+...+...|++++|..+|+++.+.++ .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 4556666677777777777777776665443 555666666666666777777777776665432 24555666666666
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046719 216 KEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKR 267 (808)
Q Consensus 216 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 267 (808)
..|++++|.+.|+++.+... .+..++..+...+.+.|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666665432 2455555666666666666666666666544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.97 E-value=3e-09 Score=119.70 Aligned_cols=153 Identities=11% Similarity=0.005 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 046719 639 IVAVEKLFNEML--------QINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKL 709 (808)
Q Consensus 639 ~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~ 709 (808)
+++|.+.+++.+ +. .+.+...+..++.+|...|++++|++.|+++++. .| +...|..++.++...|++
T Consensus 407 ~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 407 PVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp HHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHcCCH
Confidence 555555555554 32 2445678888999999999999999999999984 45 556899999999999999
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 046719 710 SEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSE 788 (808)
Q Consensus 710 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~ 788 (808)
++|+..|+++++ +.| +...|..++.++.+.|++++ +..|+++++.++. +...+..++.+|.+.|++++|+..+++
T Consensus 484 ~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~ 559 (681)
T 2pzi_A 484 DSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTLDE 559 (681)
T ss_dssp HHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 999999999998 556 57889999999999999999 9999999999887 889999999999999999999999999
Q ss_pred HHHcCCCCCc
Q 046719 789 ISIVGKDAWT 798 (808)
Q Consensus 789 ~~~~~~~~~~ 798 (808)
+++.+|++..
T Consensus 560 al~l~P~~~~ 569 (681)
T 2pzi_A 560 VPPTSRHFTT 569 (681)
T ss_dssp SCTTSTTHHH
T ss_pred hcccCcccHH
Confidence 9998887644
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.96 E-value=4e-09 Score=106.26 Aligned_cols=222 Identities=12% Similarity=0.018 Sum_probs=141.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 046719 532 MGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCK-KGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLE 610 (808)
Q Consensus 532 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 610 (808)
.|++++|.+++++..+.. + . .+.+ .+++++|...|.++ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~-~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-K-T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-C-C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-c-c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456677777777666531 1 0 1222 45666666666554 446777899999998
Q ss_pred HHHHHHHCC----CCcC-HHhHHHHHHHHHHcC-HHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHccCCHHHHHH
Q 046719 611 LYENMKKLG----IKPS-LRTYHPLLSGCIREG-IVAVEKLFNEMLQIN--L-VPD--LLVYNALIHCYAEHGDVQKALV 679 (808)
Q Consensus 611 ~~~~~~~~~----~~p~-~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~--~-~~~--~~~~~~l~~~~~~~g~~~~A~~ 679 (808)
.|.+..+.. -.+. ..++..+...+...| +++|...|++.++.. . .+. ..+++.+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 888776531 1111 345666777777777 888888888877641 1 111 3466777778877 88888888
Q ss_pred HHHHHHHCCCCCC-------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCChhHH
Q 046719 680 LHSEMVDQGIRPD-------KMTYNSLIFGHLREGKLSEVKELVNDMKVK----GLIPK-ADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 680 ~~~~~~~~g~~pd-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A 747 (808)
.|++.++. .|+ ..+++.++..+...|++++|+..++++++. +..+. ...+..++.++...|++++|
T Consensus 137 ~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 137 LYQQAAAV--FENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHH--HHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 88888763 221 246778888888888888888888887652 11111 22556667777777888888
Q ss_pred HHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHH
Q 046719 748 YIWYREMFENGFIPS----FCIYNELTNGLKQEGKLKEAQI 784 (808)
Q Consensus 748 ~~~~~~~~~~~~~~~----~~~~~~l~~~l~~~g~~~~A~~ 784 (808)
...+++++ ..+.-. ......++..+ ..|+.+++..
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 88888887 544211 11233444444 5677666555
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-08 Score=86.38 Aligned_cols=115 Identities=13% Similarity=0.088 Sum_probs=100.0
Q ss_pred CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHH
Q 046719 654 LVPD-LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADT 730 (808)
Q Consensus 654 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~ 730 (808)
+.|+ ...+...+..|.+.|++++|++.|+++++. .| +...|..++.++.+.|++++|+..++++++ +.| +...
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a 83 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKG 83 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHH
Confidence 4454 356788899999999999999999999984 45 566899999999999999999999999998 455 5788
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGL 773 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 773 (808)
|..++.++...|++++|++.|+++++..|. +..++..|..++
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~~~l 125 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPS-NEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHHHhc
Confidence 999999999999999999999999999877 788887776654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-07 Score=89.41 Aligned_cols=178 Identities=12% Similarity=-0.015 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC----CHHHHHHHH
Q 046719 537 DAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLG----SSQKCLELY 612 (808)
Q Consensus 537 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 612 (808)
+|++.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..|...|.. + ++++|++.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 55556666666666666666666666666543 44555555555554 4 555555555
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCC
Q 046719 613 ENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAE----HGDVQKALVLHSEMVDQG 688 (808)
Q Consensus 613 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 688 (808)
++..+ .+ +...+..|...|.. .+++++|++.|++..+.|
T Consensus 77 ~~A~~----------------------------------~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 119 (212)
T 3rjv_A 77 EKAVE----------------------------------AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS 119 (212)
T ss_dssp HHHHH----------------------------------TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST
T ss_pred HHHHH----------------------------------CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC
Confidence 55543 22 34455566666665 678888888888888754
Q ss_pred CC-CCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-C-----ChhHHHHHHHHHHHC
Q 046719 689 IR-PDKMTYNSLIFGHLR----EGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNL-K-----DFGGAYIWYREMFEN 757 (808)
Q Consensus 689 ~~-pd~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~ 757 (808)
.. .+...+..|+..|.. .+++++|+.++++..+. ..+...+..|+..|... | ++++|+.+|+++.+.
T Consensus 120 ~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 120 ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 21 015677888888888 77899999999998874 34555677788777653 3 889999999998887
Q ss_pred CCC
Q 046719 758 GFI 760 (808)
Q Consensus 758 ~~~ 760 (808)
|..
T Consensus 198 g~~ 200 (212)
T 3rjv_A 198 GFD 200 (212)
T ss_dssp TCH
T ss_pred CCH
Confidence 654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-08 Score=92.81 Aligned_cols=161 Identities=8% Similarity=-0.026 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHH-HH
Q 046719 137 INVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISG-FC 215 (808)
Q Consensus 137 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 215 (808)
+..+...+.+.|++++|...|+++++..+. +...+..+...+.+.|++++|+..|+++.+..+ +...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 344455555566666666666555544333 455555555556666666666666665554322 22222211111 11
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHccCChhHHH
Q 046719 216 KEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEV-SLVMFNSLLGGFCKAKRMEEAK 294 (808)
Q Consensus 216 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 294 (808)
..++..+|...|++..+..+. +...+..+...+.+.|++++|...|+++.+..+.+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 112223345555555544221 34555555555555556666655555555543322 2334555555555555555555
Q ss_pred HHHHHHH
Q 046719 295 SVCKEME 301 (808)
Q Consensus 295 ~~~~~m~ 301 (808)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.8e-07 Score=87.64 Aligned_cols=221 Identities=12% Similarity=0.014 Sum_probs=136.7
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCcCHhhHHHHHHHH----Hhc--
Q 046719 111 SAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCN--QYDRALDLFDEIVCMGFRPDKFTYGKAVQAA----VKI-- 182 (808)
Q Consensus 111 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-- 182 (808)
.....++|+.+++.++..+ +-...+|+.-..++...| ++++++.+++.++...++ +..+|+.-...+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 3334568888888887765 345667888888888888 888888888888887776 566666544444 444
Q ss_pred -CChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHh--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----
Q 046719 183 -GDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIR--DAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGE----- 254 (808)
Q Consensus 183 -g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----- 254 (808)
+++++++.+++++.+..++ |-.+|+--.-.+.+.|+++ ++++.++++.+..+. |..+|+.....+.+.|.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhh
Confidence 6788888888888876543 6777777777777777777 788888888776544 77777766666666555
Q ss_pred -hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhH-HHHHHHHHHHCC--CCCCHhhHHHHHHHHHhCCChHHHHH
Q 046719 255 -FEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEE-AKSVCKEMEAHG--FDPDGFTYSMLFDGYSKCGDGEGVMA 330 (808)
Q Consensus 255 -~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~g~~~~a~~ 330 (808)
++++++.++++....+ .|...|+.+-..+.+.|+..+ +..++.++.+.+ -..+...+..++..|.+.|+.++|.+
T Consensus 201 ~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 5556666665555432 355555555555555554332 333333333221 01233444444444444444444444
Q ss_pred HHHHHH
Q 046719 331 LYEELS 336 (808)
Q Consensus 331 ~~~~~~ 336 (808)
+++.+.
T Consensus 280 ~~~~l~ 285 (306)
T 3dra_A 280 VYDLLK 285 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.4e-08 Score=92.73 Aligned_cols=126 Identities=10% Similarity=-0.012 Sum_probs=91.8
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HHccCCh--
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKG-YCNLKDF-- 744 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~-~~~~g~~-- 744 (808)
...|++++|+..+++.++. .+.+...|..++..+...|++++|...++++.+. .| +...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH-CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 4467778888888887774 1335557778888888888888888888887763 34 56667777777 6677887
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 745 GGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 745 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
++|...++++++.++. +...+..++.++...|++++|...++++++..|++..
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 8888888888877665 6777888888888888888888888888888877655
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.86 E-value=1e-08 Score=103.28 Aligned_cols=223 Identities=9% Similarity=-0.000 Sum_probs=159.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 046719 496 KDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCT-MGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAE 574 (808)
Q Consensus 496 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 574 (808)
..|++++|..++++..+.. + . .+.. .+++++|...|.++ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~-~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-K-T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-C-C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-c-c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3577889999998887641 1 1 1233 58899998888775 34577889999999
Q ss_pred HHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC---CcC--HHhHHHHHHHHHHcC-HHHHH
Q 046719 575 DMLPQITSS----GLNP-DVITYNSLISGYSSLGSSQKCLELYENMKKLGI---KPS--LRTYHPLLSGCIREG-IVAVE 643 (808)
Q Consensus 575 ~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~~-~~~a~ 643 (808)
..|.+..+. +-.+ -..+|+.+...|...|++++|+..|++..+... .+. ..++..+...+.. | +++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 999987652 1111 135788889999999999999999998875311 121 3566677777877 8 99999
Q ss_pred HHHHHHHHCCCCC-C----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHhHHH
Q 046719 644 KLFNEMLQINLVP-D----LLVYNALIHCYAEHGDVQKALVLHSEMVDQGI-RPD----KMTYNSLIFGHLREGKLSEVK 713 (808)
Q Consensus 644 ~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~pd----~~~~~~l~~~~~~~g~~~~A~ 713 (808)
+.|++.++..... + ..+++.+...|.+.|++++|+..|+++++... .++ ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999998742111 1 45788889999999999999999999987311 111 125667788888899999999
Q ss_pred HHHHHHHHCCCCCC------HHHHHHHHHHHHccCChhHHHH
Q 046719 714 ELVNDMKVKGLIPK------ADTYNILVKGYCNLKDFGGAYI 749 (808)
Q Consensus 714 ~~~~~~~~~g~~p~------~~~~~~l~~~~~~~g~~~~A~~ 749 (808)
..+++.+ . .|+ ......++.++ ..|+.+.+..
T Consensus 216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999988 3 332 12344555555 5677766655
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6.7e-08 Score=96.02 Aligned_cols=167 Identities=8% Similarity=-0.031 Sum_probs=127.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHH-H
Q 046719 131 RLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYN-V 209 (808)
Q Consensus 131 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ 209 (808)
+.+...+..+...+.+.|++++|...|+++++..+. +...+..+...+.+.|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 445667888888899999999999999999887666 77888888889999999999999999887754 3433322 2
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHccC
Q 046719 210 LISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEV-SLVMFNSLLGGFCKAK 288 (808)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 288 (808)
....+.+.++.++|...|++.....+. +...+..+...|.+.|++++|...|+++.+..+.. +...+..++..|...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 233356777888888888888776433 67788888888888888888888888887754432 2556777888888888
Q ss_pred ChhHHHHHHHHHH
Q 046719 289 RMEEAKSVCKEME 301 (808)
Q Consensus 289 ~~~~A~~~~~~m~ 301 (808)
+.++|...|++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888887777654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=89.33 Aligned_cols=100 Identities=14% Similarity=-0.004 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGL 773 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 773 (808)
.+..++..+...|++++|+..|+++++ ..| +...|..++.++...|++++|+..|+++++.+|. ++..+..++.+|
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 444555555555666666665555554 223 3455555555555566666666666665555544 455555555566
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC
Q 046719 774 KQEGKLKEAQILCSEISIVGKDAW 797 (808)
Q Consensus 774 ~~~g~~~~A~~~~~~~~~~~~~~~ 797 (808)
...|++++|...+++++...|++.
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCc
Confidence 666666666666665555555443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-07 Score=85.66 Aligned_cols=131 Identities=11% Similarity=-0.021 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 658 LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKG 737 (808)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 737 (808)
...+..++..+...|++++|...|++.++. .+.+...+..++.++...|++++|...++++++.. +.+...+..++.+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 346777888899999999999999999984 23356689999999999999999999999998842 3357889999999
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHHHH
Q 046719 738 YCNLKDFGGAYIWYREMFENGFIPSFCIYNE--LTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
+...|++++|...++++++..+. +...+.. ++..+...|++++|...+.+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999998766 6666644 44448889999999999987754
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.82 E-value=3.7e-08 Score=100.28 Aligned_cols=129 Identities=13% Similarity=0.033 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 658 LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD----------------KMTYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
...+..+...|.+.|++++|+..|+++++. .|+ ...|..++.++.+.|++++|+..++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456777888888889999999999988884 444 36888999999999999999999999988
Q ss_pred CCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 046719 722 KGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEA-QILCSEISI 791 (808)
Q Consensus 722 ~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A-~~~~~~~~~ 791 (808)
+.| +...|..++.+|...|++++|+..|+++++..|. +..++..++.++...|+.++| ...+++|..
T Consensus 225 --~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 --LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 6788889999999999999999999999998777 788999999999999999988 556777664
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.1e-07 Score=87.53 Aligned_cols=60 Identities=8% Similarity=0.050 Sum_probs=40.3
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 046719 279 SLLGGFCKAKRMEEAKSVCKEMEAHGFDPDG----FTYSMLFDGYSKCGDGEGVMALYEELSGRGF 340 (808)
Q Consensus 279 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 340 (808)
.+...|.+.|++++|+..|+++++. .|+. ..+..+..+|.+.|+.++|.+.++.+...+.
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 3455666777777777777777765 2321 3566677777777777777777777766543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-07 Score=104.75 Aligned_cols=154 Identities=12% Similarity=-0.021 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVN 717 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~ 717 (808)
+++|.+.++++++.. +.+...+..+...|...|++++|++.+++.++. .| +...+..++.++...|++++|.+.++
T Consensus 5 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 5 GPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 566677777766643 334566777777777777777777777777763 34 34467777777777777777777777
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHcC
Q 046719 718 DMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQE---GKLKEAQILCSEISIVG 793 (808)
Q Consensus 718 ~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---g~~~~A~~~~~~~~~~~ 793 (808)
++++. .| +...+..++.++.+.|++++|.+.++++++..+. +...+..++.++... |+.++|...++++++.+
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 77663 34 4566777777777777777777777777776655 666777777777777 77777777777777777
Q ss_pred CCCCc
Q 046719 794 KDAWT 798 (808)
Q Consensus 794 ~~~~~ 798 (808)
|+...
T Consensus 159 p~~~~ 163 (568)
T 2vsy_A 159 VGAVE 163 (568)
T ss_dssp CCCSC
T ss_pred CcccC
Confidence 66543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=7.5e-07 Score=88.86 Aligned_cols=162 Identities=10% Similarity=-0.013 Sum_probs=118.3
Q ss_pred HHHHHHcC-HHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 046719 631 LSGCIREG-IVAVEKLFNEMLQINL-VPD----LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIR-PD----KMTYNSL 699 (808)
Q Consensus 631 ~~~~~~~~-~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-pd----~~~~~~l 699 (808)
+..+...| +++|.+.+++..+... .|+ ...+..+...+...|++++|+..++++++.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34455556 7777777777665321 122 123445777778888999999999999984222 23 2268899
Q ss_pred HHHHHhcCCHhHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCC----CCC-HHHHHH
Q 046719 700 IFGHLREGKLSEVKELVNDMKV----K-GLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGF----IPS-FCIYNE 768 (808)
Q Consensus 700 ~~~~~~~g~~~~A~~~~~~~~~----~-g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~-~~~~~~ 768 (808)
+.+|...|++++|..+++++++ . +..+. ..++..++.+|.+.|++++|+.+++++++... .+. ..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9999999999999999999873 1 11121 34788999999999999999999999886422 112 678899
Q ss_pred HHHHHHhcCC-hhHHHHHHHHHHHc
Q 046719 769 LTNGLKQEGK-LKEAQILCSEISIV 792 (808)
Q Consensus 769 l~~~l~~~g~-~~~A~~~~~~~~~~ 792 (808)
++.++.+.|+ +++|...+++++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999995 69999999998853
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-07 Score=89.58 Aligned_cols=133 Identities=12% Similarity=-0.032 Sum_probs=106.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK--ADTYNILVKG 737 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~ 737 (808)
....++..+...|++++|.++|+.+... .|+......++..+.+.+++++|+..|+...... .|. ...+..++.+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 3445667788899999999999988773 4655577788889999999999999998765521 121 3467888999
Q ss_pred HHccCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 738 YCNLKDFGGAYIWYREMFENGFIP--SFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
+...|++++|+..|+++......| ........+.++.+.|+.++|...++++...+|+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 999999999999999998533214 3457888999999999999999999999999987
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.9e-08 Score=83.74 Aligned_cols=97 Identities=13% Similarity=0.061 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC------HHHHHH
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPS------FCIYNE 768 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~ 768 (808)
+..++..+.+.|++++|+..|+++++ +.| +...|..++.+|.+.|++++|+..++++++.++... ..++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34444444444444444444444444 223 233444444444444444444444444444322110 123444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCC
Q 046719 769 LTNGLKQEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 769 l~~~l~~~g~~~~A~~~~~~~~~~~~ 794 (808)
++.++...|++++|+..+++.+...|
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 44444555555555555555444433
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.78 E-value=4.9e-08 Score=85.54 Aligned_cols=100 Identities=9% Similarity=-0.119 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHH
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNIL 734 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l 734 (808)
+...+..+...+.+.|++++|+..|+++++ +.| +...|..++.++...|++++|+..|+++++ +.| ++..|..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~l 110 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHH
Confidence 346778888999999999999999999998 456 566899999999999999999999999998 556 57889999
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 735 VKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 735 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+.+|.+.|++++|+..|+++++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999998644
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.76 E-value=7.8e-08 Score=86.44 Aligned_cols=105 Identities=13% Similarity=0.058 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHH
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNIL 734 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l 734 (808)
+...+..+...+...|++++|+..|++.++. .| +...|..++.+|...|++++|+..++++++ +.| +...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 4567778888888888999999998888884 44 556888888888888889999888888887 445 47778888
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHHH
Q 046719 735 VKGYCNLKDFGGAYIWYREMFENGFIPSFCIY 766 (808)
Q Consensus 735 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 766 (808)
+.++...|++++|+..|+++++..+. +...+
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 116 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGN-GGSDA 116 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSS-SCCHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC-chHHH
Confidence 88888888999998888888887655 44433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.5e-07 Score=80.86 Aligned_cols=118 Identities=12% Similarity=0.044 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHH
Q 046719 656 PDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNI 733 (808)
Q Consensus 656 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~ 733 (808)
.+...+..++..+...|++++|+..|+++++. .| +...+..++.++...|++++|...++++.+. .| +...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~ 89 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTR 89 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHH
Confidence 34567777888888888888888888888874 34 5567888888888888888888888888773 34 5677888
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 734 LVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGK 778 (808)
Q Consensus 734 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 778 (808)
++.++...|++++|...++++++..+. +...+..++.++...|+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhcC
Confidence 888888888888888888888887655 56777777777776654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.1e-07 Score=79.65 Aligned_cols=119 Identities=8% Similarity=-0.001 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILV 735 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 735 (808)
+...+..++..+...|++++|+..++++.+. .+.+...+..++..+...|++++|...++++.+. .| +...+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHH
Confidence 4567777888889999999999999999884 2335668889999999999999999999998874 44 577888999
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 046719 736 KGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKL 779 (808)
Q Consensus 736 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 779 (808)
.++...|++++|..+++++++..+. +...+..++.++.+.|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 9999999999999999999988766 778888888888888775
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.74 E-value=7.7e-08 Score=81.95 Aligned_cols=94 Identities=15% Similarity=0.065 Sum_probs=44.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKG 737 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~ 737 (808)
.+..++..+.+.|++++|+..|++.++. .| +...|..++.++...|++++|+..++++++ +.| +...|..++.+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 3444444444555555555555555442 22 233444445555555555555555555444 223 23444444444
Q ss_pred HHccCChhHHHHHHHHHHHC
Q 046719 738 YCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~~~ 757 (808)
+...|++++|+..++++++.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 55555555555555554444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.74 E-value=2.8e-07 Score=78.03 Aligned_cols=117 Identities=16% Similarity=0.205 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 658 LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKG 737 (808)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 737 (808)
...+..++..+...|++++|.+.++++.+.. +.+..++..++..+...|++++|..+++++.+.. +.+..++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4567777778888888888888888887742 3345577788888888888888888888877642 2356677788888
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 738 YCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG 777 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 777 (808)
+...|++++|..+++++++..+. +...+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcc
Confidence 88888888888888888877665 6667777776665543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.7e-07 Score=87.07 Aligned_cols=125 Identities=6% Similarity=-0.075 Sum_probs=85.3
Q ss_pred HHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 046719 631 LSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKL 709 (808)
Q Consensus 631 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~ 709 (808)
...+...| +++|.+.|++.+ .|+...+..++..|...|++++|++.|++.++.. +.+...+..++.++...|++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 33444455 566666555542 3456677777777777888888888888777741 22445777778888888888
Q ss_pred hHHHHHHHHHHHCCC--------------CC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 710 SEVKELVNDMKVKGL--------------IP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 710 ~~A~~~~~~~~~~g~--------------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
++|+..++++.+... .| ....+..++.++.+.|++++|...++++++..+.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 888888887776321 11 1266778888888888888888888888877654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=7.9e-08 Score=80.97 Aligned_cols=99 Identities=11% Similarity=-0.038 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGL 773 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 773 (808)
.+..++..+.+.|++++|+..++++++ ..| +...|..++.++...|++++|+..++++++.+|. +...+..++.+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 456677888888888888888888887 445 5777888888888889999999999888888776 788888888888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCC
Q 046719 774 KQEGKLKEAQILCSEISIVGKDA 796 (808)
Q Consensus 774 ~~~g~~~~A~~~~~~~~~~~~~~ 796 (808)
...|++++|+..+++++...|+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-----
T ss_pred HHcCCHHHHHHHHHHHHHhCcCC
Confidence 88899999999998888877764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-06 Score=87.31 Aligned_cols=130 Identities=8% Similarity=-0.009 Sum_probs=96.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCC-----HHH
Q 046719 662 NALIHCYAEHGDVQKALVLHSEMVDQGI---RPD--KMTYNSLIFGHLREGKLSEVKELVNDMKVK-GLIPK-----ADT 730 (808)
Q Consensus 662 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~-----~~~ 730 (808)
..++..+...|++++|+..++++.+... .+. ..+++.++..|...|++++|..+++++.+. ...|+ ..+
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~ 198 (293)
T 2qfc_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198 (293)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHH
Confidence 3456667788899999999988876321 111 337888899999999999999999887621 01222 257
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCC----C-CHHHHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMFENGFI----P-SFCIYNELTNGLKQEGKLKEA-QILCSEISI 791 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~-~~~~~~~l~~~l~~~g~~~~A-~~~~~~~~~ 791 (808)
+..++.+|...|++++|+.+++++++.... . -...+..++.++.+.|++++| ...+++++.
T Consensus 199 ~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 788889999999999999999988764211 0 156788899999999999999 777887764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.67 E-value=3e-07 Score=78.22 Aligned_cols=98 Identities=10% Similarity=-0.031 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 693 KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTN 771 (808)
Q Consensus 693 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 771 (808)
...+..++..+...|++++|+..++++++. .| +...|..++.++.+.|++++|+..++++++.+|. +...+..++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 346788999999999999999999999884 45 6788999999999999999999999999998877 7899999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcC
Q 046719 772 GLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 772 ~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
++...|++++|...+++++...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.5e-07 Score=81.13 Aligned_cols=110 Identities=10% Similarity=-0.101 Sum_probs=92.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 046719 646 FNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGL 724 (808)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 724 (808)
++++++.. +.+...+..+...+...|++++|+..|+++++. .| +...|..++.++...|++++|+..++++++ +
T Consensus 10 ~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l 84 (148)
T 2vgx_A 10 IAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--M 84 (148)
T ss_dssp HHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--c
Confidence 44444432 224567778889999999999999999999984 45 666899999999999999999999999988 4
Q ss_pred CC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 725 IP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 725 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
.| ++..+..++.++...|++++|...|+++++..+.
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 45 5788899999999999999999999999987654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.9e-07 Score=79.40 Aligned_cols=107 Identities=15% Similarity=0.185 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC--CCCC----HHHH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKG--LIPK----ADTY 731 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p~----~~~~ 731 (808)
..+..++..+.+.|++++|++.|+++++ +.| +...|..++.+|...|++++|++.++++++.. ..++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4677789999999999999999999998 456 45689999999999999999999999987631 1111 2467
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 046719 732 NILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNEL 769 (808)
Q Consensus 732 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 769 (808)
..++.++...|++++|++.|+++++.. |++.....|
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~~l 122 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEF--RDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--cCHHHHHHH
Confidence 888999999999999999999999864 455554443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=8.8e-06 Score=80.92 Aligned_cols=176 Identities=11% Similarity=0.012 Sum_probs=128.2
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhc-C-Ch
Q 046719 109 LSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCN-QYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKI-G-DL 185 (808)
Q Consensus 109 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~ 185 (808)
+......++|+++++.++..+ +-+..+|+....++...| .+++++.+++.++...++ +..+|+.-...+.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence 444556678889888888765 346777898888888888 599999999999988777 788888877777666 6 88
Q ss_pred HHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHh--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---
Q 046719 186 KRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIR--------DAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGE--- 254 (808)
Q Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--- 254 (808)
++++.+++++++..++ |-.+|+-..-.+.+.|.++ ++++.++++.+..+. |..+|+.....+.+.++
T Consensus 142 ~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 8999999999887543 7777777666666666666 888888888877554 78888888777777765
Q ss_pred ----hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC
Q 046719 255 ----FEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKR 289 (808)
Q Consensus 255 ----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 289 (808)
++++++.+++.....+ -|...|+.+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 5667777766665432 355666655555544443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.2e-06 Score=84.22 Aligned_cols=163 Identities=13% Similarity=-0.002 Sum_probs=107.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCcC-H----HhHHHHHHHHHHcC-HHHHHHHHHHHHHCCC---CCC--HHHHH
Q 046719 594 SLISGYSSLGSSQKCLELYENMKKLGIKPS-L----RTYHPLLSGCIREG-IVAVEKLFNEMLQINL---VPD--LLVYN 662 (808)
Q Consensus 594 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~---~~~--~~~~~ 662 (808)
..+..+...|++++|.+.+++..+...... . ..+..+...+...| +++|.+.+++.++... .+. ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344455556666666666655554321110 0 11122233344455 6666666666654211 111 45788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC----CCC-CHHHH
Q 046719 663 ALIHCYAEHGDVQKALVLHSEMVDQ-GIRPD-----KMTYNSLIFGHLREGKLSEVKELVNDMKVKG----LIP-KADTY 731 (808)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~~~~~-g~~pd-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~p-~~~~~ 731 (808)
.++..|...|++++|+..|+++.+. ...|+ ..+++.++..|...|++++|+.+++++++.. ... -..++
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 8999999999999999999998731 01222 1478899999999999999999999986521 111 15678
Q ss_pred HHHHHHHHccCChhHH-HHHHHHHHH
Q 046719 732 NILVKGYCNLKDFGGA-YIWYREMFE 756 (808)
Q Consensus 732 ~~l~~~~~~~g~~~~A-~~~~~~~~~ 756 (808)
..++.++.+.|++++| ..+++++++
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 8999999999999999 788988875
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-07 Score=81.14 Aligned_cols=100 Identities=13% Similarity=-0.027 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHccCChhHHHHHHHHHHHC-----
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-------------ADTYNILVKGYCNLKDFGGAYIWYREMFEN----- 757 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 757 (808)
+...+..+.+.|++++|+..|+++++ +.|+ ...|..++.++.+.|++++|+..++++++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 44455555555666666666665554 2332 236777788888888888888888888877
Q ss_pred --CCCCCHHHH----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 758 --GFIPSFCIY----NELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 758 --~~~~~~~~~----~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+|. +...| +..+.+|...|++++|+..|+++++..|++-.
T Consensus 92 e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 92 ELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp CTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred cCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 665 67777 88888888888888888888888877665443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.9e-06 Score=84.58 Aligned_cols=161 Identities=14% Similarity=0.038 Sum_probs=111.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCC-CcCHH----hHHHHHHHHHHcC-HHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 046719 596 ISGYSSLGSSQKCLELYENMKKLGI-KPSLR----TYHPLLSGCIREG-IVAVEKLFNEMLQINLV-PD----LLVYNAL 664 (808)
Q Consensus 596 ~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~----~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~-~~----~~~~~~l 664 (808)
+..+...|++++|..++++..+... .|+.. .+..+...+...+ +++|.+.++++++.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4455667777777777777665321 12211 1122333344455 77777777777763211 22 3468899
Q ss_pred HHHHHccCCHHHHHHHHHHHHHC-----CCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCC-HHHHHH
Q 046719 665 IHCYAEHGDVQKALVLHSEMVDQ-----GIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVK----GLIPK-ADTYNI 733 (808)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~~~~~-----g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~ 733 (808)
+..|...|++++|+..|+++++. +..+... ++..++..|...|++++|+.+++++++. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999999999999999999841 2223333 7889999999999999999999998642 22222 678889
Q ss_pred HHHHHHccCC-hhHHHHHHHHHHH
Q 046719 734 LVKGYCNLKD-FGGAYIWYREMFE 756 (808)
Q Consensus 734 l~~~~~~~g~-~~~A~~~~~~~~~ 756 (808)
++.++.+.|+ +++|...++++++
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999995 6999999999875
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=3.3e-07 Score=85.33 Aligned_cols=131 Identities=8% Similarity=-0.073 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDK----------------MTYNSLIFGHLREGKLSEVKELVNDMKVK 722 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 722 (808)
..+..+...+...|++++|+..|++.++.. +.+. ..+..++.++...|++++|+..++++++.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 456667778888999999999999988741 1122 67888999999999999999999999884
Q ss_pred CCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHHHHcC
Q 046719 723 GLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQ-ILCSEISIVG 793 (808)
Q Consensus 723 g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~-~~~~~~~~~~ 793 (808)
.| +...+..++.++...|++++|+..|+++++..+. +...+..+..++...|+.+++. ..+.++...+
T Consensus 118 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 118 --DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp --STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC-------------
T ss_pred --CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45 5788899999999999999999999999998776 7888999999999988888887 5666665543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.5e-07 Score=86.51 Aligned_cols=153 Identities=14% Similarity=0.057 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHhHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQ----GIRPD-KMTYNSLIFGHLREGKLSEVK 713 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~pd-~~~~~~l~~~~~~~g~~~~A~ 713 (808)
+++|.+.++.+.. ........+..+...+...|++++|+..+++.++. +..|. ..++..++..+...|++++|.
T Consensus 8 ~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 86 (203)
T 3gw4_A 8 YALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAAR 86 (203)
T ss_dssp HHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5555553333322 11234556777777777788888888887777651 22222 236777778888888888888
Q ss_pred HHHHHHHHC----CCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHhcCChhHH
Q 046719 714 ELVNDMKVK----GLIP--KADTYNILVKGYCNLKDFGGAYIWYREMFENGF---IPS--FCIYNELTNGLKQEGKLKEA 782 (808)
Q Consensus 714 ~~~~~~~~~----g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~l~~~g~~~~A 782 (808)
..+++..+. +..| ....+..++.++...|++++|...++++++... .+. ...+..++.++...|++++|
T Consensus 87 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 166 (203)
T 3gw4_A 87 RCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA 166 (203)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence 888776542 1111 133466777778888888888888888764211 111 23356777888888888888
Q ss_pred HHHHHHHHHc
Q 046719 783 QILCSEISIV 792 (808)
Q Consensus 783 ~~~~~~~~~~ 792 (808)
...+++++..
T Consensus 167 ~~~~~~al~~ 176 (203)
T 3gw4_A 167 QQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777754
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=5.8e-07 Score=78.90 Aligned_cols=110 Identities=10% Similarity=-0.013 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHH
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD----KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTY 731 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~ 731 (808)
+...+..++..+...|++++|++.|++.++ ..|+ ...+..++.++...|++++|+..++++.+. .| +...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHH
Confidence 344555555556666666666666666655 2344 335555555556666666666666555542 23 34455
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 732 NILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTN 771 (808)
Q Consensus 732 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 771 (808)
..++.++...|++++|..+++++++..+. +...+..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHH
Confidence 55555555566666666666665555443 3444433333
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-05 Score=79.17 Aligned_cols=151 Identities=11% Similarity=-0.034 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGD-VQKALVLHSEMVDQGIRPDKMTYNSLIFGHLRE----------- 706 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~----------- 706 (808)
++++.++++++++.+ +.+...|+.-..++...|. ++++++.++++++.. +-|...|+.....+...
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccc
Confidence 344444444444432 3334444444444444444 345555555555421 11333444444443333
Q ss_pred ---CCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcc-----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 707 ---GKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNL-----------KDFGGAYIWYREMFENGFIPSFCIYNELTN 771 (808)
Q Consensus 707 ---g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 771 (808)
+.++++++++++++. ..| |...|+.+-..+.+. +.++++++.++++++..|+ +.-++..++.
T Consensus 204 ~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~ 280 (331)
T 3dss_A 204 LPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE-NKWCLLTIIL 280 (331)
T ss_dssp CCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHH
Confidence 234455555555554 233 344444333333332 2345555555555555433 2222222211
Q ss_pred ---HHHhcCChhHHHHHHHHHHHcCC
Q 046719 772 ---GLKQEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 772 ---~l~~~g~~~~A~~~~~~~~~~~~ 794 (808)
.+...|..++...++.++.+..|
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 281 LMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHhhcccccHHHHHHHHHHHHHhCc
Confidence 11234455555555555555444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-05 Score=79.02 Aligned_cols=173 Identities=9% Similarity=-0.058 Sum_probs=134.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcC-ChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHcc-C-CHhHH
Q 046719 147 CNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIG-DLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKE-K-KIRDA 223 (808)
Q Consensus 147 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A 223 (808)
.+..++|+.+++.++..++. +..+|+.--..+...| ++++++.+++.++...++ +..+|+.-.-.+.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 34556899999999998877 7888998888888888 599999999999998654 777888887777776 7 88999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC------
Q 046719 224 EKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFE--------KVSALRERMKRDKVEVSLVMFNSLLGGFCKAKR------ 289 (808)
Q Consensus 224 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 289 (808)
+++++.+.+.... |..+|+--.-.+.+.|.++ ++.+.++++.+..+ .|...|+.....+.+.++
T Consensus 145 L~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchH
Confidence 9999999987554 7888887777776666666 88888888887643 477778877777777765
Q ss_pred -hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCC
Q 046719 290 -MEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGD 324 (808)
Q Consensus 290 -~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 324 (808)
++++++.+++++.... -|...|+.+-..+.+.|.
T Consensus 223 ~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 6788888888877532 266677776666655554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-07 Score=82.43 Aligned_cols=100 Identities=12% Similarity=-0.065 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHH
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNIL 734 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l 734 (808)
+...+..+...+.+.|++++|+..|+++++. .| +...|..++.++...|++++|+..++++++ +.| ++..+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 92 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGAL--MDINEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHH
Confidence 3456677888899999999999999999984 45 566899999999999999999999999998 445 57888999
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 735 VKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 735 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+.++...|++++|...|+++++..|.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999987654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.4e-07 Score=93.30 Aligned_cols=192 Identities=9% Similarity=-0.038 Sum_probs=110.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 591 TYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYA 669 (808)
Q Consensus 591 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 669 (808)
.+..+...+...|++++|+..|++..+.. +.+...+..+...+...| +++|.+.+++.++.. +.+...+..++.+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444455555555555555554421 123444444444555555 555555555555432 345667788888899
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHH
Q 046719 670 EHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAY 748 (808)
Q Consensus 670 ~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 748 (808)
..|++++|+..|+++.+. .|+.. .+...++...+. .++... ......-...+......+...+ .|++++|+
T Consensus 84 ~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 999999999999988873 34321 222222222221 122222 2222232444555555554433 78999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHcC
Q 046719 749 IWYREMFENGFIPSFCIYNELTNGLKQE-GKLKEAQILCSEISIVG 793 (808)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~A~~~~~~~~~~~ 793 (808)
+.++++++..+. +......+...+.+. +++++|..+|+++.+..
T Consensus 156 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 156 EECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp TTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999998877554 555555666666665 67889999998887643
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=6.2e-07 Score=74.93 Aligned_cols=107 Identities=15% Similarity=0.036 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKG 737 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~ 737 (808)
..+..++..+...|++++|...++++.+. .+.+...+..++..+...|++++|...++++.+. .| +...+..++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 34444555555555555555555555542 1123344555555555555555555555555542 22 34445555555
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 046719 738 YCNLKDFGGAYIWYREMFENGFIPSFCIYNEL 769 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 769 (808)
+...|++++|...++++++.++. +...+..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 112 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGL 112 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence 55555555555555555554433 33333333
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.1e-07 Score=78.47 Aligned_cols=94 Identities=19% Similarity=0.184 Sum_probs=41.8
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 046719 699 LIFGHLREGKLSEVKELVNDMKVKGLIPK-A---DTYNILVKGYCNLKDFGGAYIWYREMFENGFIPS---FCIYNELTN 771 (808)
Q Consensus 699 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~ 771 (808)
++..+...|++++|...++++.+. .|+ . ..+..++.++...|++++|+..++++++..|. + ...+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence 344444444444444444444431 121 1 23444444444444444444444444444333 2 334444444
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC
Q 046719 772 GLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 772 ~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
++...|++++|...++++++..|+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC
Confidence 444444444444444444444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=4.7e-07 Score=78.33 Aligned_cols=97 Identities=6% Similarity=-0.048 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHH
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNIL 734 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l 734 (808)
+...+..++..+...|++++|+..|++.++. .| +...|..++.++...|++++|...++++++. .| +...+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHH
Confidence 3445555555555555555555555555552 22 2335555555555555555555555555542 23 34445555
Q ss_pred HHHHHccCChhHHHHHHHHHHHC
Q 046719 735 VKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 735 ~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
+.++...|++++|+..++++++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 55555555555555555555543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.6e-07 Score=77.22 Aligned_cols=104 Identities=12% Similarity=0.030 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELT 770 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 770 (808)
+...+..++..+...|++++|...++++.+. .| +...+..++.++...|++++|+..++++++..+. +...+..++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 4457889999999999999999999999884 45 6788999999999999999999999999998766 889999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 771 NGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 771 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.++...|++++|...++++++..|++..
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 119 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKE 119 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchH
Confidence 9999999999999999999999887654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.4e-07 Score=74.02 Aligned_cols=104 Identities=14% Similarity=0.063 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 046719 693 KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFI-PSFCIYNELTN 771 (808)
Q Consensus 693 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~ 771 (808)
...+..++..+...|++++|...++++.+.. ..+...+..++.++...|++++|+..++++++..+. .+...+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3456677777777888888888888777632 235667777788888888888888888888776432 14667778888
Q ss_pred HHHhc-CChhHHHHHHHHHHHcCCCCC
Q 046719 772 GLKQE-GKLKEAQILCSEISIVGKDAW 797 (808)
Q Consensus 772 ~l~~~-g~~~~A~~~~~~~~~~~~~~~ 797 (808)
++... |++++|.+.++++++..|...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 888888888888887777654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.7e-06 Score=72.20 Aligned_cols=103 Identities=13% Similarity=-0.034 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 693 KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTN 771 (808)
Q Consensus 693 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 771 (808)
...+..++..+...|++++|...++++.+. .| +...+..++.++...|++++|...++++++..+. +...+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 456788999999999999999999999874 44 6788889999999999999999999999998766 7889999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 772 GLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 772 ~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
++...|++++|...++++++..|++..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~ 107 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQ 107 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 999999999999999999998887654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1e-06 Score=74.41 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 693 KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNG 772 (808)
Q Consensus 693 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 772 (808)
...+..++..+...|++++|.++++++.+.. +.+...+..++.++...|++++|..+++++.+..+. +...+..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 4578899999999999999999999998742 336788899999999999999999999999998766 78899999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 773 LKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 773 l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+...|++++|..++++++...|++..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~ 112 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAE 112 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHH
Confidence 99999999999999999999887655
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.2e-07 Score=86.04 Aligned_cols=189 Identities=12% Similarity=-0.053 Sum_probs=91.5
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhhHHHH-------HHHHHhcCChHHHHHHHHHhhhCCCC-----CC----------
Q 046719 146 RCNQYDRALDLFDEIVCMGFRPDKFTYGKA-------VQAAVKIGDLKRACEIFDGMEKSRTR-----PN---------- 203 (808)
Q Consensus 146 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~---------- 203 (808)
..+++..|+..|.+++...+. ....|..+ ...+.+.++..+++..+.+.++..+. -+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 356666666666666665544 45555555 34444444555555555544441100 00
Q ss_pred -----hhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC--HHH
Q 046719 204 -----VFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVS--LVM 276 (808)
Q Consensus 204 -----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~ 276 (808)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 1122234445555666666666666555432 333244444445556666666666665433211 110 124
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 046719 277 FNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPD--GFTYSMLFDGYSKCGDGEGVMALYEELSGR 338 (808)
Q Consensus 277 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 338 (808)
+..+..++...|++++|+..|++.......|. ......+..++.+.|+.++|..+|+++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44455555566666666666665553221132 123334444455555555555555555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.55 E-value=8e-07 Score=79.73 Aligned_cols=104 Identities=9% Similarity=-0.114 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELT 770 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 770 (808)
+...+..++..+...|++++|+..|+++++ +.| +...|..++.+|...|++++|+..++++++.++. +...+..++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 344777888888889999999999998887 445 5777888888888899999999999998888766 788888889
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 771 NGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 771 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.+|...|++++|+..+++++...|++..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 9999999999999999999888888776
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-06 Score=75.34 Aligned_cols=104 Identities=11% Similarity=-0.059 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHH
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK----ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYN 767 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 767 (808)
+...+..++..+...|++++|+..++++.+ ..|+ ...|..++.++...|++++|+..++++++..+. +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 556888999999999999999999999988 5676 677889999999999999999999999988766 788999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 768 ELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 768 ~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.++.++...|++++|...+++++...|++..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 134 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKV 134 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 9999999999999999999999999888765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.52 E-value=2.8e-06 Score=76.18 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 046719 135 DSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGF 214 (808)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (808)
..+..++..+...|++++|...|+++++..+. +...|..+...+...|++++|...|++..+..+ .+..++..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 34666777777777777777777777765444 566677777777777777777777777766532 2555666777777
Q ss_pred HccCCHhHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHH
Q 046719 215 CKEKKIRDAEKLFDEMCQRKLVPTRVTYNT--LVDGYCKVGEFEKVSALRERM 265 (808)
Q Consensus 215 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~~ 265 (808)
...|++++|...|++..+.... +...+.. ++..+.+.|++++|...++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 7777777777777776665322 3334422 233355566666666666554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-07 Score=95.24 Aligned_cols=134 Identities=9% Similarity=-0.055 Sum_probs=76.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM------------------TYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
.+..+...+.+.|++++|+..|+++++ +.|+.. .|..++.+|.+.|++++|+..++++++
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566667777777777777777776 344433 788999999999999999999999988
Q ss_pred CCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 722 KGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNG-LKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 722 ~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+.| +...|..++.+|...|++++|+..|+++++..+. +..++..+..+ ....+..+++...+.+++...|++.+
T Consensus 259 --~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 259 --EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp --HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred --hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 455 6788999999999999999999999999987766 67777777777 45567888999999999998887765
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.7e-06 Score=73.84 Aligned_cols=105 Identities=11% Similarity=0.007 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTN 771 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 771 (808)
+...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|+..++++++..+. +...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHH
Confidence 34578889999999999999999999998742 336788999999999999999999999999998766 7889999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 772 GLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 772 ~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
++...|++++|...+++++...|++..
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 115 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNET 115 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchH
Confidence 999999999999999999999887654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.3e-07 Score=80.70 Aligned_cols=101 Identities=11% Similarity=-0.025 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-------CC---------CCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 046719 658 LLVYNALIHCYAEHGDVQKALVLHSEMVDQ-------GI---------RPD-KMTYNSLIFGHLREGKLSEVKELVNDMK 720 (808)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~---------~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 720 (808)
...+...+..+.+.|++++|+..|++.++. .- .|. ...|..++.+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445666777777888888888888887763 00 122 2356666666777777777777777766
Q ss_pred HCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 721 VKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 721 ~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+ +.| +...|..++.++...|++++|+..|+++++..|.
T Consensus 91 ~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 91 K--REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp H--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred h--cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 6 334 4556666677777777777777777777666544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.48 E-value=2.9e-07 Score=91.03 Aligned_cols=99 Identities=10% Similarity=-0.035 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHH
Q 046719 133 SLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLIS 212 (808)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 212 (808)
+...+..++..+.+.|++++|...|+++++..+. +...|..+..++.+.|++++|...++++++..+ .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 4566777778888888888888888888776554 677777777888888888888888888777543 35667777778
Q ss_pred HHHccCCHhHHHHHHHHHHhC
Q 046719 213 GFCKEKKIRDAEKLFDEMCQR 233 (808)
Q Consensus 213 ~~~~~g~~~~A~~~~~~m~~~ 233 (808)
+|...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888777654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.7e-05 Score=77.05 Aligned_cols=154 Identities=8% Similarity=0.032 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HhHHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHG--DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGK-LSEVKEL 715 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~-~~~A~~~ 715 (808)
++++.++++.++..+ +.+..+|+.-..++...| .+++++.+++++++.. +-|...|+.-.+++...|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 567888888888764 567888988888888888 4899999999999952 3367799999999999998 6999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcc--------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 046719 716 VNDMKVKGLIPKADTYNILVKGYCNL--------------KDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQE----- 776 (808)
Q Consensus 716 ~~~~~~~g~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----- 776 (808)
++++++.. +.|...|+.....+... +.++++++++++++...|. |..+|+.+-..+...
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence 99999843 34788898888777765 4588999999999999888 888898777777666
Q ss_pred ------CChhHHHHHHHHHHHcCCCC
Q 046719 777 ------GKLKEAQILCSEISIVGKDA 796 (808)
Q Consensus 777 ------g~~~~A~~~~~~~~~~~~~~ 796 (808)
+..+++++.++++++..|++
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc
Confidence 56899999999999999875
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.47 E-value=7.7e-07 Score=94.73 Aligned_cols=128 Identities=10% Similarity=0.035 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 658 LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD----------------KMTYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
...+..+...|.+.|++++|+..|+++++. .|+ ...|..++.+|.+.|++++|+..++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 345666777777788888888888887763 333 35788888888888888888888888887
Q ss_pred CCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH-HHHHHH
Q 046719 722 KGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQI-LCSEIS 790 (808)
Q Consensus 722 ~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~-~~~~~~ 790 (808)
+.| +...|..++.+|...|++++|+..|+++++..+. +..++..++.++.+.|+.++|.+ .+.+|.
T Consensus 346 --~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 346 --LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp --HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred --cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 5777888888888888888888888888887766 67788888888888888887764 344444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-06 Score=79.55 Aligned_cols=118 Identities=8% Similarity=0.090 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--hHHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFG-HLREGKL--SEVKEL 715 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~-~~~~g~~--~~A~~~ 715 (808)
+++|.+.+++.++.. +.+...+..++..|...|++++|+..|+++++.. +.+...+..++.+ +...|++ ++|...
T Consensus 26 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 26 PEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAM 103 (177)
T ss_dssp -CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 556666676666653 4567788889999999999999999999998842 2355678888888 7788998 999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 716 VNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 716 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
++++++. .| +...+..++.++...|++++|...++++++..+.
T Consensus 104 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 104 IDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 9999884 45 5778889999999999999999999999988665
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.46 E-value=9.4e-07 Score=78.87 Aligned_cols=136 Identities=14% Similarity=0.098 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----
Q 046719 658 LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIR-PD----KMTYNSLIFGHLREGKLSEVKELVNDMKVKGL-IPK---- 727 (808)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-pd----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~---- 727 (808)
..++..+...+...|++++|+..+++..+..-. ++ ..++..++..+...|++++|..+++++.+... .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 346778888899999999999999998763100 11 13678899999999999999999999765210 112
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCC----C-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 728 ADTYNILVKGYCNLKDFGGAYIWYREMFENGF----I-PSFCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 728 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
...+..++.++...|++++|...++++++... . .....+..++.++...|++++|...+++.++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999886421 1 124577889999999999999999999988643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.9e-06 Score=74.43 Aligned_cols=102 Identities=15% Similarity=-0.028 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 046719 691 PDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNEL 769 (808)
Q Consensus 691 pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 769 (808)
.+...+..++..+...|++++|+..++++++. .| +...|..++.++...|++++|+..++++++.++. +...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 35668889999999999999999999999884 45 5788999999999999999999999999998777 88999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 770 TNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 770 ~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
+.++...|++++|...+++++...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999999987766
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.5e-06 Score=71.73 Aligned_cols=101 Identities=9% Similarity=-0.069 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC---CHHHHHH
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP---KADTYNI 733 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~ 733 (808)
+...+..++..+...|++++|+..++++++.. +.+...+..++.++...|++++|...++++.+. .| +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHH
Confidence 44567778889999999999999999999852 335668889999999999999999999999884 44 4788899
Q ss_pred HHHHHHcc-CChhHHHHHHHHHHHCCCC
Q 046719 734 LVKGYCNL-KDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 734 l~~~~~~~-g~~~~A~~~~~~~~~~~~~ 760 (808)
++.++... |++++|.+.++++++..+.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999999 9999999999999987665
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.7e-06 Score=71.59 Aligned_cols=101 Identities=11% Similarity=-0.064 Sum_probs=83.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHHH
Q 046719 661 YNALIHCYAEHGDVQKALVLHSEMVDQGIRPDK----MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK----ADTYN 732 (808)
Q Consensus 661 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~ 732 (808)
+..++..+...|++++|++.|+++++. .|+. ..+..++.++...|++++|...++++.+. .|+ ...+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 80 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHH
Confidence 345667788999999999999999984 3433 37788999999999999999999999874 453 67788
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHH
Q 046719 733 ILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIY 766 (808)
Q Consensus 733 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 766 (808)
.++.++...|++++|...++++++..|. +....
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 113 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYPG-SDAAR 113 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-SHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-ChHHH
Confidence 9999999999999999999999987655 44443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=2.9e-07 Score=85.71 Aligned_cols=130 Identities=8% Similarity=-0.082 Sum_probs=100.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CH-------------
Q 046719 664 LIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KA------------- 728 (808)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~------------- 728 (808)
.+......|++++|.+.++...+. .+ ....+..++..+...|++++|+..++++++. .| +.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKN 85 (198)
T ss_dssp ------------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHH
Confidence 334455567888887777654431 22 3346788999999999999999999999873 33 22
Q ss_pred ---HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 729 ---DTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 729 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
..+..++.++...|++++|+..++++++..+. +...+..++.+|...|++++|...+++++...|++..
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence 78889999999999999999999999998766 8899999999999999999999999999999887754
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.3e-07 Score=77.65 Aligned_cols=88 Identities=11% Similarity=0.078 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHH
Q 046719 671 HGDVQKALVLHSEMVDQGI-RPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 671 ~g~~~~A~~~~~~~~~~g~-~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A 747 (808)
.|++++|+..|+++++.+. .|+ ...+..++.++...|++++|+..++++++. .| +...+..++.++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 4666677777777766321 132 235666667777777777777777776663 34 355666666677777777777
Q ss_pred HHHHHHHHHCCCC
Q 046719 748 YIWYREMFENGFI 760 (808)
Q Consensus 748 ~~~~~~~~~~~~~ 760 (808)
+..++++++..+.
T Consensus 81 ~~~~~~al~~~p~ 93 (117)
T 3k9i_A 81 VELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCC
Confidence 7777776665443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-06 Score=78.09 Aligned_cols=101 Identities=13% Similarity=-0.054 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHC-------CC---------CC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVK-------GL---------IP-KADTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~---------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
+...+..+.+.|++++|+..|+++++. +- .| +...|..++.+|.+.|++++|+..++++++.+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 556778888888888888888888763 00 22 23567888888888888999988888888887
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 046719 759 FIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAW 797 (808)
Q Consensus 759 ~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 797 (808)
|. +...+..++.+|...|++++|...+++++...|++.
T Consensus 94 p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 94 ET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred Cc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 66 788888888888888899999988888888888766
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.6e-06 Score=73.97 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC--CCC----HHHHH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGL--IPK----ADTYN 732 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p~----~~~~~ 732 (808)
..+..++..+...|++++|+..|+++.+.. +.+...+..++..+...|++++|..+++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456667777788888888888888887742 33555777788888888888888888888765321 112 56677
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 733 ILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGL 773 (808)
Q Consensus 733 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 773 (808)
.++.++...|++++|...++++++.. |+......+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 77888888888888888888887764 3455555555444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.2e-06 Score=73.54 Aligned_cols=97 Identities=12% Similarity=0.037 Sum_probs=81.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKG 737 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~ 737 (808)
.+..++..+.+.|++++|+..|+++++. .| +...|..++.++...|++++|+..++++++ +.| +...+..++.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 3456677888999999999999999984 55 566888999999999999999999999988 556 57788899999
Q ss_pred HHccCChhHHHHHHHHHHHCCCC
Q 046719 738 YCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+...|++++|+..++++++..|.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC----
T ss_pred HHHcCCHHHHHHHHHHHHHhCcC
Confidence 99999999999999999976544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.40 E-value=5.5e-07 Score=96.25 Aligned_cols=120 Identities=13% Similarity=0.043 Sum_probs=97.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc
Q 046719 663 ALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCN 740 (808)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 740 (808)
.++..+.+.|++++|++.|+++++. .| +...|..++.++.+.|++++|++.++++++ +.| +...|..++.+|..
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 3445667889999999999999984 55 466899999999999999999999999998 455 57788899999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 046719 741 LKDFGGAYIWYREMFENGFIPSFCIYNELTNG--LKQEGKLKEAQILCS 787 (808)
Q Consensus 741 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--l~~~g~~~~A~~~~~ 787 (808)
.|++++|++.++++++..+. +...+..++.+ +.+.|++++|+..++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999998766 66677777777 888899999999988
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.40 E-value=6.1e-06 Score=76.87 Aligned_cols=132 Identities=7% Similarity=-0.112 Sum_probs=61.6
Q ss_pred hhhHHHHHHHHHccCCHhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc--
Q 046719 204 VFVYNVLISGFCKEKKIRDAEKLFDEMCQR----KLV-PTRVTYNTLVDGYCKVGEFEKVSALRERMKRD----KVEV-- 272 (808)
Q Consensus 204 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-- 272 (808)
..+++.+...+...|++++|...|++..+. +.. ....++..+...|...|++++|...+++.... +..+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344444444555555555555555444331 000 12234444555555555555555555544332 1011
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCC---CCCC--HhhHHHHHHHHHhCCChHHHHHHHHHH
Q 046719 273 SLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHG---FDPD--GFTYSMLFDGYSKCGDGEGVMALYEEL 335 (808)
Q Consensus 273 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~ 335 (808)
....+..+...+...|++++|...+++..+.. ..+. ..++..+...+...|++++|...+++.
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 12334455555555666666666655554210 0011 123455556666666666666666554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2.4e-06 Score=87.74 Aligned_cols=123 Identities=11% Similarity=0.058 Sum_probs=102.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC--------------CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQ--------------GIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGL 724 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 724 (808)
.+..+...+.+.|++++|++.|+++++. ...| +...|..++.+|.+.|++++|+..++++++ +
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~ 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE--I 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--h
Confidence 4666777888889999999888888761 0223 345788999999999999999999999998 4
Q ss_pred CC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 046719 725 IP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQIL 785 (808)
Q Consensus 725 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~ 785 (808)
.| +...|..++.+|...|++++|+..|+++++..+. +...+..+..++...++.+++.+.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 5788999999999999999999999999998776 788889999999888888877653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2.6e-06 Score=72.62 Aligned_cols=101 Identities=12% Similarity=0.051 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC--CC----HHHHH
Q 046719 694 MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFI--PS----FCIYN 767 (808)
Q Consensus 694 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~ 767 (808)
..+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|..+++++++..+. ++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 467889999999999999999999998842 336788899999999999999999999999987553 12 77899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 768 ELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 768 ~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
.++.++...|++++|...+++++...++
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999998874
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-06 Score=75.91 Aligned_cols=98 Identities=8% Similarity=-0.075 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD--------K-----MTYNSLIFGHLREGKLSEVKELVNDMKVKGL- 724 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd--------~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~- 724 (808)
..+......+.+.|++++|+..|++.++ +.|+ . ..|..++.++.+.|++++|+..++++++ +
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~ 87 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH--YF 87 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hh
Confidence 3456677788889999999999999998 4555 2 2899999999999999999999999988 5
Q ss_pred ------CCC-HHHH----HHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 725 ------IPK-ADTY----NILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 725 ------~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
.|+ ...| ...+.++...|++++|+..|+++++..|.
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 775 5678 89999999999999999999999987554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.36 E-value=7.4e-06 Score=83.19 Aligned_cols=131 Identities=11% Similarity=-0.025 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC--------------HhhHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 046719 133 SLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPD--------------KFTYGKAVQAAVKIGDLKRACEIFDGMEKS 198 (808)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 198 (808)
+...+..+...|.+.|++++|+..|++++...+... ...|..+..++.+.|++++|+..|+++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788899999999999999999999988765532 567777777888888888888888887775
Q ss_pred CCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHH
Q 046719 199 RTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKV-SALRERM 265 (808)
Q Consensus 199 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~~ 265 (808)
.+ .+...|..+..+|...|++++|+..|++..+..+. +..++..+...+.+.|+.+++ ...++.|
T Consensus 226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 36677777778888888888888888887766432 566777777777777777776 3455554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.30 E-value=9.7e-07 Score=73.79 Aligned_cols=93 Identities=15% Similarity=-0.007 Sum_probs=73.0
Q ss_pred hcCCHhHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 046719 705 REGKLSEVKELVNDMKVKGL-IP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEA 782 (808)
Q Consensus 705 ~~g~~~~A~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A 782 (808)
..|++++|+..++++++.+. .| +...+..++.++...|++++|+..++++++..|. +...+..++.++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 35788889999999887421 23 3567888888999999999999999999988777 788888999999999999999
Q ss_pred HHHHHHHHHcCCCCCc
Q 046719 783 QILCSEISIVGKDAWT 798 (808)
Q Consensus 783 ~~~~~~~~~~~~~~~~ 798 (808)
...+++++...|++..
T Consensus 81 ~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 81 VELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHhCCCcHH
Confidence 9999999888877654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-05 Score=87.27 Aligned_cols=155 Identities=11% Similarity=0.024 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGD----------VQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREG 707 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g 707 (808)
.++|.+.+++++..+ +.+...|+.-..++...|+ ++++++.++++++. .| +..+|+.-.+++.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 678888888888864 4456778777777777777 99999999999984 45 5569999999999999
Q ss_pred --CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------
Q 046719 708 --KLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLK-DFGGAYIWYREMFENGFIPSFCIYNELTNGLKQE-------- 776 (808)
Q Consensus 708 --~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------- 776 (808)
+++++++.++++.+.. .-|...|.....++.+.| .+++++++++++++.+|. +..+|+..+..+...
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 7799999999999843 337889999999999999 899999999999999888 889999888888774
Q ss_pred ------CChhHHHHHHHHHHHcCCCCCc
Q 046719 777 ------GKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 777 ------g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+++++|++++++++...|++..
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~s 227 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQS 227 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCcc
Confidence 6689999999999999998765
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=2.6e-06 Score=73.25 Aligned_cols=88 Identities=10% Similarity=0.052 Sum_probs=59.0
Q ss_pred HccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH----------hHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKL----------SEVKELVNDMKVKGLIP-KADTYNILVK 736 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 736 (808)
.+.+.+++|++.+++.++. .| +...|+.++.++...+++ ++|+..|+++++ +.| +...|..++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence 4556778888888888773 44 455777777777777664 377777777766 455 3566777777
Q ss_pred HHHccC-----------ChhHHHHHHHHHHHCCCC
Q 046719 737 GYCNLK-----------DFGGAYIWYREMFENGFI 760 (808)
Q Consensus 737 ~~~~~g-----------~~~~A~~~~~~~~~~~~~ 760 (808)
+|...| ++++|++.|+++++.+|.
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 776653 677777777777766443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00011 Score=77.78 Aligned_cols=196 Identities=14% Similarity=0.110 Sum_probs=100.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCcC
Q 046719 561 INGLCKKGRVMEAEDMLPQITSSGLNPDV----------------ITYNSLISGYSSLGSSQKCLELYENMKKLG-IKPS 623 (808)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~ 623 (808)
...+.+.|++++|++.|..+.+....... .++..++..|...|++++|.+.+..+.+.. ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45677888999999999888875322110 135667777888888888888877765421 0111
Q ss_pred HHh---HHHHHHH-HHHcC-HHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CC--
Q 046719 624 LRT---YHPLLSG-CIREG-IVAVEKLFNEMLQ----INLVP-DLLVYNALIHCYAEHGDVQKALVLHSEMVDQ--GI-- 689 (808)
Q Consensus 624 ~~~---~~~l~~~-~~~~~-~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~-- 689 (808)
..+ ....+.. +...| .+.+.+++.+... .+..+ ...++..++..|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 111 1111111 12223 5555555555443 11111 1334455555666666666666666555432 11
Q ss_pred CCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 690 RPDK-MTYNSLIFGHLREGKLSEVKELVNDMKVK--GLI-P-K--ADTYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 690 ~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~-p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
.+.. .++..++..|...|++++|..+++++... .+. | . ...+..++..+...|++++|...+.++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1111 24555556666666666666665554321 011 1 0 12334445555555666666666555554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=6.1e-05 Score=81.88 Aligned_cols=138 Identities=7% Similarity=-0.004 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-CHhHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHG--DVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREG-KLSEVKE 714 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g-~~~~A~~ 714 (808)
++++.+.++++++.+ +.+..+|+.-..++.+.| +++++++.++++++. .| |...|+.-.+++.+.| .++++++
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHH
Confidence 677888888888764 567788998889999999 779999999999995 44 6679999999999999 8999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcc--------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 046719 715 LVNDMKVKGLIPKADTYNILVKGYCNL--------------KDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLK 780 (808)
Q Consensus 715 ~~~~~~~~g~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 780 (808)
+++++++.. ..|...|+....++.+. +.+++|+++++++++.+|. +...|+.+...+.+.|+.+
T Consensus 166 ~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 166 FTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred HHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 999998842 33788898888887764 5679999999999999888 8899999999999998866
Q ss_pred H
Q 046719 781 E 781 (808)
Q Consensus 781 ~ 781 (808)
+
T Consensus 244 ~ 244 (567)
T 1dce_A 244 V 244 (567)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=5e-05 Score=65.24 Aligned_cols=110 Identities=14% Similarity=0.000 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHH
Q 046719 673 DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCN----LKDFGGAY 748 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~ 748 (808)
++++|++.|++..+.| .|+.. |+..|...+.+++|++++++..+.| ++..+..|+..|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666654 22222 5555555555666666666665543 44555556666655 56666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 046719 749 IWYREMFENGFIPSFCIYNELTNGLKQ----EGKLKEAQILCSEISIVG 793 (808)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~~ 793 (808)
++|+++.+.| ++..+..|+.+|.. .++.++|..++++..+.+
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666552 44555666666666 566666666666666553
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.4e-06 Score=71.90 Aligned_cols=94 Identities=10% Similarity=0.033 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC------HH
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPS------FC 764 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~ 764 (808)
+...+..++..+...|++++|+..++++++ ..| +...|..++.++...|++++|+..++++++..+. + ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHH
Confidence 344666777777778888888888887776 334 5667777788888888888888888888776554 3 55
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHH
Q 046719 765 IYNELTNGLKQEGKLKEAQILCSE 788 (808)
Q Consensus 765 ~~~~l~~~l~~~g~~~~A~~~~~~ 788 (808)
.+..++.++...|+.++|...+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 666777777777776666655443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=6.2e-05 Score=79.80 Aligned_cols=197 Identities=10% Similarity=-0.034 Sum_probs=144.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCC
Q 046719 525 LIDGSCTMGRIKDAFKFFDEMVKREMGPT----------------LVTFNALINGLCKKGRVMEAEDMLPQITSSG-LNP 587 (808)
Q Consensus 525 li~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 587 (808)
-...+.+.|++++|++.|..+++...... ...+..++..|...|++++|.+.+..+...- ..+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 35667889999999999999998632211 1246788999999999999999999876521 111
Q ss_pred CH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCcC-HHhHHHHHHHHHHcC-HHHHHHHHHHHHHC--CC-
Q 046719 588 DV----ITYNSLISGYSSLGSSQKCLELYENMKKL----GIKPS-LRTYHPLLSGCIREG-IVAVEKLFNEMLQI--NL- 654 (808)
Q Consensus 588 ~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~--~~- 654 (808)
+. ...+.+...+...|++++|..++++.... +..+. ..++..+...+...| +++|..++.++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 22 23344444556789999999999887643 22233 456777888899999 99999999988752 11
Q ss_pred -CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 655 -VP-DLLVYNALIHCYAEHGDVQKALVLHSEMVDQ--GIR-P-D--KMTYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 655 -~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~-p-d--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
.+ ....+..++..|...|++++|...+++.... .+. | . ...+..++..+...|++++|...+.++.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12 2467888999999999999999999998763 122 2 1 13566778888899999999999888754
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.13 E-value=1e-05 Score=86.40 Aligned_cols=109 Identities=13% Similarity=0.073 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVN 717 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~ 717 (808)
+++|.+.|++.++.. +.+...|..+..+|.+.|++++|++.++++++. .| +...|..++.+|...|++++|.+.++
T Consensus 22 ~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 98 (477)
T 1wao_1 22 YENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAALRDYE 98 (477)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555555432 334666777777777777777777777777773 44 34467777777777777777777777
Q ss_pred HHHHCCCCC-CHHHHHHHHHH--HHccCChhHHHHHHH
Q 046719 718 DMKVKGLIP-KADTYNILVKG--YCNLKDFGGAYIWYR 752 (808)
Q Consensus 718 ~~~~~g~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 752 (808)
++++. .| +...+..+..+ +.+.|++++|++.++
T Consensus 99 ~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 99 TVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77663 34 33444455544 666777777777777
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.5e-05 Score=84.66 Aligned_cols=123 Identities=8% Similarity=-0.062 Sum_probs=101.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----------------HHHHHH
Q 046719 671 HGDVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK----------------ADTYNI 733 (808)
Q Consensus 671 ~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----------------~~~~~~ 733 (808)
.+++++|+..|+...+ ..|+ ...|..++..+.+.|++++|+..|+++++ +.|+ ...|..
T Consensus 247 l~~~~~A~~~~~~~~~--~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~n 322 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTK--EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLN 322 (457)
T ss_dssp EEEEECCCCGGGSCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHH
Confidence 3455666666655544 2343 34788999999999999999999999987 3443 478899
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 734 LVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 734 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
++.+|.+.|++++|+..++++++..+. +...+..++.+|...|++++|+..++++++..|++..
T Consensus 323 la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~ 386 (457)
T 1kt0_A 323 LAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999998877 8999999999999999999999999999999998776
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.1e-05 Score=67.07 Aligned_cols=79 Identities=11% Similarity=-0.035 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHH
Q 046719 676 KALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYRE 753 (808)
Q Consensus 676 ~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 753 (808)
+|+..|+++++. .| +...+..++..+...|++++|+..++++++. .| +...|..++.++...|++++|...|++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 466777777763 34 4557777778888888888888888887763 34 466677777788888888888888887
Q ss_pred HHHCC
Q 046719 754 MFENG 758 (808)
Q Consensus 754 ~~~~~ 758 (808)
+++..
T Consensus 79 al~~~ 83 (115)
T 2kat_A 79 GLAAA 83 (115)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.07 E-value=8.8e-06 Score=82.63 Aligned_cols=102 Identities=10% Similarity=-0.082 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHHccCChhHHHHHHHHHH
Q 046719 694 MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKAD------------------TYNILVKGYCNLKDFGGAYIWYREMF 755 (808)
Q Consensus 694 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~~ 755 (808)
..+..++..+.+.|++++|+..|+++++ +.|+.. .|..++.+|.+.|++++|+..+++++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3577889999999999999999999987 456543 78899999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 756 ENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 756 ~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+..+. +...+..++.+|...|++++|...+++++...|++..
T Consensus 258 ~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~ 299 (338)
T 2if4_A 258 TEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299 (338)
T ss_dssp HHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence 98776 8999999999999999999999999999998887655
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2e-05 Score=80.94 Aligned_cols=103 Identities=9% Similarity=-0.038 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHC--------------CCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVK--------------GLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
.+..++..+.+.|++++|+..++++++. ...| +...|..++.+|.+.|++++|+..++++++..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 5778899999999999999999998761 0123 457788999999999999999999999999877
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 760 IPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 760 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
. +...+..++.+|...|++++|+..++++++..|++..
T Consensus 305 ~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~ 342 (370)
T 1ihg_A 305 S-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342 (370)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred h-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 6 8999999999999999999999999999999988654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.2e-05 Score=68.61 Aligned_cols=137 Identities=12% Similarity=0.011 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 046719 590 ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVP--DLLVYNALIHC 667 (808)
Q Consensus 590 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 667 (808)
.++..+...+...|++++|+..+++..+.. + +.+ .+ ....+..+...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~----------------------------~~~-~~~~~~~~~~~l~~~ 58 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--K----------------------------EFG-DKAAERIAYSNLGNA 58 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--H----------------------------HHT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--H----------------------------HhC-CchHHHHHHHHHHHH
Confidence 355666666667777777777776665420 0 000 11 12467778888
Q ss_pred HHccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCC-CHHHHHHHHHH
Q 046719 668 YAEHGDVQKALVLHSEMVDQ----GIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVK----GLIP-KADTYNILVKG 737 (808)
Q Consensus 668 ~~~~g~~~~A~~~~~~~~~~----g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~ 737 (808)
+...|++++|.+.+++..+. +..+. ..++..++..+...|++++|.+.+++..+. +..+ ....+..++.+
T Consensus 59 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 138 (164)
T 3ro3_A 59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA 138 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHH
Confidence 89999999999999988753 11111 336778899999999999999999987642 1111 13567788999
Q ss_pred HHccCChhHHHHHHHHHHHC
Q 046719 738 YCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~~~ 757 (808)
+...|++++|.+.++++++.
T Consensus 139 ~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 139 YTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHH
Confidence 99999999999999998864
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0002 Score=61.44 Aligned_cols=111 Identities=12% Similarity=-0.072 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLR----EGKLSEVKE 714 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~----~g~~~~A~~ 714 (808)
.++|.+.|++..+.| .++.. |...|...+.+++|++.|++..+.| +...+..|+..|.. .+++++|.+
T Consensus 11 ~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 11 LKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 677888888888876 44433 7777777788888999999998865 66778888888888 789999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCC
Q 046719 715 LVNDMKVKGLIPKADTYNILVKGYCN----LKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 715 ~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 760 (808)
++++..+.| ++..+..|+..|.. .+++++|.++|+++.+.|..
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 999998864 57778888888888 88999999999999988643
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.96 E-value=1.8e-05 Score=63.65 Aligned_cols=64 Identities=27% Similarity=0.223 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
+...+..++.++...|++++|+..++++++ ..| +...|..++.+|...|++++|+..++++++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344666677777777777777777777666 334 3556666777777777777777777776654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.92 E-value=5e-05 Score=80.34 Aligned_cols=127 Identities=6% Similarity=-0.121 Sum_probs=90.0
Q ss_pred HHHccCCHHHHHHHHHHHHHC---CC---CCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHC---CCCCC----HHHHH
Q 046719 667 CYAEHGDVQKALVLHSEMVDQ---GI---RPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVK---GLIPK----ADTYN 732 (808)
Q Consensus 667 ~~~~~g~~~~A~~~~~~~~~~---g~---~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~----~~~~~ 732 (808)
.+...|++++|+.++++.++. -+ .|+.. +++.|+.+|...|++++|..+++++++- -+.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345678888888888887753 11 23333 7888888888888888888888886531 12232 35577
Q ss_pred HHHHHHHccCChhHHHHHHHHHHH-----CCCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 733 ILVKGYCNLKDFGGAYIWYREMFE-----NGFI-PS-FCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 733 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
.|+..|..+|++++|..+++++++ .|++ |+ ......+..++.+.|++++|..++.++.+..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888874 4654 11 2344577778888888889988888887643
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.91 E-value=8.8e-05 Score=58.07 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 694 MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNG 772 (808)
Q Consensus 694 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 772 (808)
..+..++..+...|++++|+..++++++. .| +...+..++.++...|++++|...++++++..+. +...+..++.+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 86 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 35666777777777777777777777663 33 4566777777777777777777777777776655 66667777766
Q ss_pred HHhcC
Q 046719 773 LKQEG 777 (808)
Q Consensus 773 l~~~g 777 (808)
+.+.|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 65543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.87 E-value=3.9e-05 Score=63.58 Aligned_cols=81 Identities=15% Similarity=0.065 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 046719 711 EVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEI 789 (808)
Q Consensus 711 ~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 789 (808)
+|+..++++++ ..| +...+..++.++...|++++|+..++++++.++. +...+..++.++...|++++|...++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555554 223 3455555555555556666666666555555444 4555555555555556666666655555
Q ss_pred HHcCC
Q 046719 790 SIVGK 794 (808)
Q Consensus 790 ~~~~~ 794 (808)
+...|
T Consensus 80 l~~~~ 84 (115)
T 2kat_A 80 LAAAQ 84 (115)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 55443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=2e-05 Score=67.77 Aligned_cols=90 Identities=11% Similarity=-0.048 Sum_probs=56.9
Q ss_pred cCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCh----------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 706 EGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDF----------GGAYIWYREMFENGFIPSFCIYNELTNGLK 774 (808)
Q Consensus 706 ~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 774 (808)
.+.+++|++.+++.++ +.| +...|..++.++...+++ ++|+..|+++++.+|. +..+|+.++.+|.
T Consensus 15 ~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3456666666666666 334 456666666666666554 3677777777666655 6666666666666
Q ss_pred hcC-----------ChhHHHHHHHHHHHcCCCCCc
Q 046719 775 QEG-----------KLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 775 ~~g-----------~~~~A~~~~~~~~~~~~~~~~ 798 (808)
..| ++++|+..|+++++.+|++..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 653 667777777777766666543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.84 E-value=2.2e-05 Score=64.54 Aligned_cols=93 Identities=8% Similarity=0.070 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-------H
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-------A 728 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~ 728 (808)
+...+..+...+...|++++|++.|++.++. .| +...+..++.++...|++++|+..++++++ +.|+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHH
Confidence 4567788889999999999999999999984 44 566899999999999999999999999988 5564 5
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHH
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYRE 753 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~ 753 (808)
..+..++.++...|++++|+..+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 6677888888888888887766554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=9.3e-05 Score=62.80 Aligned_cols=88 Identities=11% Similarity=-0.020 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 046719 710 SEVKELVNDMKVKGLIPKADTYNILVKGYCNLK---DFGGAYIWYREMFENG-FIPSFCIYNELTNGLKQEGKLKEAQIL 785 (808)
Q Consensus 710 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~g~~~~A~~~ 785 (808)
..+.+.|.+..+.|. ++..+...+++++++.+ +.++++.++++..+.+ |.-...+++.|+-++.+.|++++|+++
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 444555555554432 56666666677777766 5557777777766654 212456666777777777777777777
Q ss_pred HHHHHHcCCCCCc
Q 046719 786 CSEISIVGKDAWT 798 (808)
Q Consensus 786 ~~~~~~~~~~~~~ 798 (808)
++++++..|++..
T Consensus 94 ~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 94 VRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHCTTCHH
T ss_pred HHHHHhcCCCCHH
Confidence 7777777776655
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.66 E-value=5.9e-05 Score=60.36 Aligned_cols=88 Identities=14% Similarity=0.140 Sum_probs=61.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046719 698 SLIFGHLREGKLSEVKELVNDMKVKGLIP-KAD-TYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQ 775 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 775 (808)
..+..+...|++++|+..++++++ ..| +.. .+..++.++...|++++|+..|+++++.++. +...+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~------- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR------- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH-------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH-------
Confidence 356667778888888888888777 344 456 7778888888888888888888888887665 4443321
Q ss_pred cCChhHHHHHHHHHHHcCCCC
Q 046719 776 EGKLKEAQILCSEISIVGKDA 796 (808)
Q Consensus 776 ~g~~~~A~~~~~~~~~~~~~~ 796 (808)
+...+|...+++.....|++
T Consensus 75 -~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHCC
T ss_pred -HHHHHHHHHHHHHhccCccc
Confidence 45667777777666655544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00026 Score=55.24 Aligned_cols=71 Identities=17% Similarity=0.198 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 727 KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 727 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+...+..++..+...|++++|+.+++++++..+. +...+..++.++...|++++|...+++++...|++..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 78 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHH
Confidence 3567888999999999999999999999998766 7889999999999999999999999999999887654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00019 Score=57.44 Aligned_cols=65 Identities=14% Similarity=0.015 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 728 ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 728 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
...+..++.++...|++++|+..|+++++.+|. +...|..++.+|...|++++|+..+++++...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 344445555555555555555555555554443 44445555555555555555555555554433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00068 Score=52.94 Aligned_cols=69 Identities=7% Similarity=-0.091 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHccCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 726 PKADTYNILVKGYCNLKD---FGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 726 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
+|+..+..++.++...++ .++|..+++++++.+|. ++.....++..+.+.|++++|+..++++++..|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456667777777754444 67778888888777766 7777777778888888888888888888777776
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00038 Score=73.64 Aligned_cols=135 Identities=10% Similarity=0.007 Sum_probs=81.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHhcCCCCCCChhhHHhhhhccCCCCCccHHHHHHHHHHcCCChhHHHHHHHHHHh----
Q 046719 52 KIRILFQNNRTEAAQSLIKSIVLSNASPFTSPHELFSLFSVSSPYYKPTFTNILLSILSSAKLPSEALQLYASTKA---- 127 (808)
Q Consensus 52 ~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---- 127 (808)
.+..+..+|++++|..+++..+......+ ...+|......+.|..+|...|++++|..++.+.+.
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~l-----------g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~ 383 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVF-----------ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMK 383 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTB-----------CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 34456789999999999887764322111 111222223346677778888888888887776553
Q ss_pred -CCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCC-cCH-hhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 046719 128 -DGT--RLSLDSINVLLECLVRCNQYDRALDLFDEIVC-----MGFR-PDK-FTYGKAVQAAVKIGDLKRACEIFDGMEK 197 (808)
Q Consensus 128 -~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~-~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 197 (808)
.|. +....+++.|...|..+|++++|..+|+++++ .|.. |++ .+.+.+-.++...|.+++|..+|..+.+
T Consensus 384 ~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 384 LYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 22234677778888888888888887777664 2333 221 2334444555556666666666666543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0011 Score=65.63 Aligned_cols=65 Identities=20% Similarity=0.007 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
+..+|..+...+...|++++|...+++++.. .|+...|..++..+.-.|++++|.+.|++++..+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3345555555555556666666666665553 3555555555555555666666666666655553
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00068 Score=53.94 Aligned_cols=65 Identities=15% Similarity=0.097 Sum_probs=59.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 733 ILVKGYCNLKDFGGAYIWYREMFENGFIPSFC-IYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 733 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
..+..+...|++++|+..++++++..+. +.. .+..++.++...|++++|...++++++..|++..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 70 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 4567788999999999999999998776 778 9999999999999999999999999999998876
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0044 Score=61.46 Aligned_cols=67 Identities=13% Similarity=-0.036 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 727 KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 727 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
++.++..+...+...|++++|+..++++++.+ |+...|..++..+.-.|++++|...+++++..+|.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 34444444444444455555555555555543 34444445555555555555555555555555443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0014 Score=53.37 Aligned_cols=90 Identities=10% Similarity=-0.035 Sum_probs=64.3
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhH---HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHH
Q 046719 708 KLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGG---AYIWYREMFENG-FIPSFCIYNELTNGLKQEGKLKEAQ 783 (808)
Q Consensus 708 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~g~~~~A~ 783 (808)
.+..+.+.+.+....| .++..+-..+++++.+..+..+ ++.++++..+.+ +.-.....+.|+-++++.|++++|+
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3445555555555444 3677777777888888776665 788888877654 3225677778888888888888888
Q ss_pred HHHHHHHHcCCCCCc
Q 046719 784 ILCSEISIVGKDAWT 798 (808)
Q Consensus 784 ~~~~~~~~~~~~~~~ 798 (808)
++++.+++..|++..
T Consensus 95 ~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhCCCCHH
Confidence 888888888888766
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0017 Score=52.15 Aligned_cols=73 Identities=11% Similarity=-0.032 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHH
Q 046719 694 MTYNSLIFGHLREGKLSEVKELVNDMKVKG------LIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYN 767 (808)
Q Consensus 694 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 767 (808)
.-+..|+..+...|++..|...++.+.+.- -.+....+..++.++.+.|++++|+.+++++++..|. +..+..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~ 84 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHh
Confidence 334567777777777777777777765421 1123556677777777777777777777777776555 444433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.017 Score=54.73 Aligned_cols=105 Identities=14% Similarity=0.124 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHc-cC
Q 046719 674 VQKALVLHSEMVDQGIRPD---KMTYNSLIFGHLRE-----GKLSEVKELVNDMKVKGLIP--KADTYNILVKGYCN-LK 742 (808)
Q Consensus 674 ~~~A~~~~~~~~~~g~~pd---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~-~g 742 (808)
..+|...+++.++ +.|+ ...|..|+..|.+. |+.++|.++|+++++ +.| +..++..++..++. .|
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 5677777788877 5676 33677777777773 788888888888887 556 36777777777777 48
Q ss_pred ChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046719 743 DFGGAYIWYREMFENGFI--PSFCIYNELTNGLKQEGKLKEAQILCSEIS 790 (808)
Q Consensus 743 ~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 790 (808)
+.++|..++++++...+. |+.... ..++.++|..+++++-
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~la--------n~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLL--------VILSQKRARWLKAHVQ 296 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHH--------HHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHH--------HHHHHHHHHHHHHHhH
Confidence 888888888888877666 443322 2234456666666543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0017 Score=67.50 Aligned_cols=87 Identities=7% Similarity=-0.087 Sum_probs=61.7
Q ss_pred ccCCHHHHHHHHHHHHHC---CCC---CCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHH-----CCC-CCC-HHHHHHHH
Q 046719 670 EHGDVQKALVLHSEMVDQ---GIR---PDK-MTYNSLIFGHLREGKLSEVKELVNDMKV-----KGL-IPK-ADTYNILV 735 (808)
Q Consensus 670 ~~g~~~~A~~~~~~~~~~---g~~---pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~-~p~-~~~~~~l~ 735 (808)
..|++++|+.++++.++. -+. |+. .+++.|+.+|...|++++|..+++++++ .|- .|+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888888888887752 122 333 3788888888888888888888888753 221 122 34577888
Q ss_pred HHHHccCChhHHHHHHHHHHH
Q 046719 736 KGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 736 ~~~~~~g~~~~A~~~~~~~~~ 756 (808)
..|..+|++++|..+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888888764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.003 Score=65.59 Aligned_cols=94 Identities=11% Similarity=0.002 Sum_probs=74.9
Q ss_pred hcCCHhHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHH-----CCCC-CC-HHHHHHHH
Q 046719 705 REGKLSEVKELVNDMKV---KGLIPK----ADTYNILVKGYCNLKDFGGAYIWYREMFE-----NGFI-PS-FCIYNELT 770 (808)
Q Consensus 705 ~~g~~~~A~~~~~~~~~---~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~-~~~~~~l~ 770 (808)
..|++++|..++++.++ .-+.|+ ..+++.|+.+|..+|+|++|..+++++++ .|+. |+ ...++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46889999999999764 223343 46688999999999999999999999884 3543 22 35788999
Q ss_pred HHHHhcCChhHHHHHHHHHHH-----cCCCCCc
Q 046719 771 NGLKQEGKLKEAQILCSEISI-----VGKDAWT 798 (808)
Q Consensus 771 ~~l~~~g~~~~A~~~~~~~~~-----~~~~~~~ 798 (808)
..|..+|++++|..+++++++ .|++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 999999999999999999986 4566554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0065 Score=57.55 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhc-C
Q 046719 639 IVAVEKLFNEMLQINLVPD---LLVYNALIHCYAE-----HGDVQKALVLHSEMVDQGIRPD--KMTYNSLIFGHLRE-G 707 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~g~~pd--~~~~~~l~~~~~~~-g 707 (808)
...|...+++.++. .|+ ...|..++..|.. -|+.++|.++|++.++ +.|+ ..++...+..++.. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 45677777777774 454 4577778877777 3888888888888888 5663 55777777777774 8
Q ss_pred CHhHHHHHHHHHHHCCCC
Q 046719 708 KLSEVKELVNDMKVKGLI 725 (808)
Q Consensus 708 ~~~~A~~~~~~~~~~g~~ 725 (808)
+.++|.+++++.+.....
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 888888888888874433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0069 Score=51.36 Aligned_cols=86 Identities=19% Similarity=0.174 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChhHH
Q 046719 673 DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREG---KLSEVKELVNDMKVKGLIP--KADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A 747 (808)
....+.+.|.+..+.| .++..+...+++++.+.+ ++++++.+++.+.+.+ .| +...+..++-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455666666666654 356667778888888877 5668888888877643 24 355667777788888888888
Q ss_pred HHHHHHHHHCCCC
Q 046719 748 YIWYREMFENGFI 760 (808)
Q Consensus 748 ~~~~~~~~~~~~~ 760 (808)
.++++.+++..|.
T Consensus 91 ~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCC
Confidence 8888888877654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0046 Score=64.33 Aligned_cols=92 Identities=12% Similarity=-0.005 Sum_probs=68.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCC---CCCC---H-HHHHHHHHHHHhcCCHhHHHHHHHHHHHC---CCCCC----HHH
Q 046719 665 IHCYAEHGDVQKALVLHSEMVDQG---IRPD---K-MTYNSLIFGHLREGKLSEVKELVNDMKVK---GLIPK----ADT 730 (808)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~~~~~g---~~pd---~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~----~~~ 730 (808)
+..+...|++++|+.++++.++.. +.|+ . .+++.|+.+|...|++++|..+++++++- -..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556789999999999888631 2232 2 37888999999999999999999987531 12232 355
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
++.|+..|..+|++++|..+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 78899999999999999999998874
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0055 Score=47.68 Aligned_cols=68 Identities=12% Similarity=0.005 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 691 PDKMTYNSLIFGHLREGK---LSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 691 pd~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+|...+..++.++...++ .++|..+++++++ ..| +...+..++..+.+.|++++|+.+|+++++.++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 344556666666654443 5677777777766 445 3556666777777777777777777777765443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0083 Score=62.39 Aligned_cols=99 Identities=12% Similarity=-0.038 Sum_probs=77.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHH-----CCCC-CC-HHH
Q 046719 700 IFGHLREGKLSEVKELVNDMKVK---GLIPK----ADTYNILVKGYCNLKDFGGAYIWYREMFE-----NGFI-PS-FCI 765 (808)
Q Consensus 700 ~~~~~~~g~~~~A~~~~~~~~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~-~~~ 765 (808)
+..+..+|++++|..+++++++. -+.|+ ..+++.++.+|..+|+|++|..+++++++ .|+. |+ ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566789999999999998753 13333 45688999999999999999999999874 3443 22 356
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCc
Q 046719 766 YNELTNGLKQEGKLKEAQILCSEISI-----VGKDAWT 798 (808)
Q Consensus 766 ~~~l~~~l~~~g~~~~A~~~~~~~~~-----~~~~~~~ 798 (808)
++.|+..|..+|++++|..+++++++ .|++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~ 411 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSL 411 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 78999999999999999999999886 4565544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.014 Score=46.75 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFENG------FIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDA 796 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 796 (808)
..+..++..+.+.|+++.|..+++++++.. ..+...++..|+.++.+.|++++|+.+++++++..|++
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 344455556666666666666666655421 11234555566666666666666666666666655554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.035 Score=45.93 Aligned_cols=74 Identities=9% Similarity=-0.030 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHHccCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 725 IPKADTYNILVKGYCNLKDF---GGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 725 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.|+..+-..+++++.+..+. .+++.++++..+.++.-.....+.|+-++++.|++++|+++++.+++..|++-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 46666766777777776643 466777777777655445667777777788888888888888888877777766
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.019 Score=46.81 Aligned_cols=75 Identities=9% Similarity=-0.039 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHHccCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 724 LIPKADTYNILVKGYCNLKDF---GGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 724 ~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
-.|+..+-..+++++.+..+. .+++.++++..+.++.-....++.|+-++.+.|++++|+++++.+++..|++-.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 456777777777788776654 467888888887665435677888888888888888888888888888888777
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.065 Score=44.60 Aligned_cols=105 Identities=10% Similarity=0.033 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHHHccCCH------HHHHHHHHHHHHCCCCCCHH-HHHHHHH------HHHhcCCHhHHHHHHHHHHH
Q 046719 655 VPDLLVYNALIHCYAEHGDV------QKALVLHSEMVDQGIRPDKM-TYNSLIF------GHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 655 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~g~~pd~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 721 (808)
+.|..+|-..+...-+.|+. ++.+++|+++... ++|+.. .|...+. .+...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44667777777777777888 8888899998885 777642 1111111 12344789999999999876
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 046719 722 KGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP 761 (808)
Q Consensus 722 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 761 (808)
.+-.- ...|...+.--.++|+...|.+++.+++..+++|
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 42222 6777777777788999999999999999988874
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.23 Score=57.10 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=25.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 046719 564 LCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENM 615 (808)
Q Consensus 564 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 615 (808)
....|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34456666665553322 24455666666666666666666666654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.3 Score=56.06 Aligned_cols=129 Identities=12% Similarity=0.125 Sum_probs=69.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 046719 313 SMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRT 392 (808)
Q Consensus 313 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 392 (808)
..++..+.+.|..+.|.++.+... .-.......|++++|.++...+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 445555566666666665443211 1123345567777777764332 2566777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 046719 393 GDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQIL 472 (808)
Q Consensus 393 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 472 (808)
|+++.|.+.|.++.+ |..+...+...|+.+...++.+.....|. ++.....|.+.|++++|.+++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776643 23344444455666555554444443321 222233344555555555554
Q ss_pred HH
Q 046719 473 EE 474 (808)
Q Consensus 473 ~~ 474 (808)
.+
T Consensus 760 ~~ 761 (814)
T 3mkq_A 760 IK 761 (814)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.81 E-value=3.9e-05 Score=77.01 Aligned_cols=224 Identities=16% Similarity=0.157 Sum_probs=102.3
Q ss_pred CccHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHH
Q 046719 98 KPTFTNILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQ 177 (808)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 177 (808)
.|.+++.|.++....++..+|.+-| ++. .|+..|..++....+.|.+++-...+.-+.+. .+ ++..=+.++-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~k-e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-AR-ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCC----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CC-STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhC----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hc-ccccHHHHHH
Confidence 4455555555555555555555433 111 12333555555555555555555544433322 11 2233344555
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 046719 178 AAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEK 257 (808)
Q Consensus 178 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 257 (808)
+|++.|++.+-.++. ..||+.-...+.+-|...|.++.|.-+|..+. -|.-|...+++.|++..
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHH
Confidence 555555544321111 12344444455555555555555554443322 12333444455555555
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 046719 258 VSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSG 337 (808)
Q Consensus 258 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 337 (808)
|.+.-++ ..+..||..+-.+|...+.+.-|.-.--.++-. +| -...|+..|-..|-+++.+.+++.-..
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 5432222 134456666666666666655554433333221 11 122344455556666666666655542
Q ss_pred CCCCcChhcHHHHHHHHHhc
Q 046719 338 RGFRINSYTCSILLNALCKE 357 (808)
Q Consensus 338 ~~~~~~~~~~~~l~~~~~~~ 357 (808)
. -+.....++-|.-.|++-
T Consensus 258 l-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 258 L-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp S-TTCCHHHHHHHHHHHHSS
T ss_pred C-CchhHHHHHHHHHHHHhc
Confidence 2 122333444454455443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.052 Score=44.17 Aligned_cols=90 Identities=18% Similarity=0.117 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChhHH
Q 046719 673 DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSE---VKELVNDMKVKGLIP--KADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A 747 (808)
.+..+.+.|.+..+.|. |+..+-..++|++.+...... ++.+++.+.+.+ .| .......|+-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34455555555555442 566666677778877776555 777777776642 23 234455677777888888888
Q ss_pred HHHHHHHHHCCCCCCHHH
Q 046719 748 YIWYREMFENGFIPSFCI 765 (808)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~ 765 (808)
.++++.+++..|. +..+
T Consensus 94 ~~~~~~lL~~eP~-n~QA 110 (126)
T 1nzn_A 94 LKYVRGLLQTEPQ-NNQA 110 (126)
T ss_dssp HHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHHHhCCC-CHHH
Confidence 8888888877655 4443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.67 E-value=3.8 Score=46.16 Aligned_cols=314 Identities=10% Similarity=-0.000 Sum_probs=160.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------CcchhHHHHHHH
Q 046719 457 DGYGRMGHFDKCFQILEEMENSGMKPN--VVSYGSLINWLCKDCKLLEAEIVLKDMENRGV-------LPNAQIYNMLID 527 (808)
Q Consensus 457 ~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-------~~~~~~~~~li~ 527 (808)
-+....|+.++++.++......+-..+ ...-..+.-++...|...++..++.......- .+....-.++.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 356677888888887776554210112 22333444455666666677777766554311 011222233333
Q ss_pred HHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 046719 528 GSCTMGR-IKDAFKFFDEMVKREMGPTLVTFN--ALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGS 604 (808)
Q Consensus 528 ~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 604 (808)
++.-.|. -+++...+..++...- +...... +|...+.-.|+.+....++..+.+.. .-++.-...+.-++...|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 3333332 2456666666665421 1111122 23333456677777778887776632 1122223333344557888
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 046719 605 SQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG---IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLH 681 (808)
Q Consensus 605 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 681 (808)
.+.+..+.+.+... ..|-...-..+..+|...| .....+++..+.+.. ..+..-...+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88888888888763 2233333333444444444 444455777777632 233333333334455567766677777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHccCCh-------hHHHHHH
Q 046719 682 SEMVDQGIRPDKMTYNSLIFGHLREGKL-SEVKELVNDMKVKGLIPKADTYNIL--VKGYCNLKDF-------GGAYIWY 751 (808)
Q Consensus 682 ~~~~~~g~~pd~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~l--~~~~~~~g~~-------~~A~~~~ 751 (808)
+.+.+.+ .|....-..++-+....|.. .+++..+..+.. .+|..+-... .-+..-.|.. ..-++.+
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L 693 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNF 693 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHH
Confidence 7666643 44443333344444444443 678888888864 4554443222 2223333322 2233333
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHhcCC
Q 046719 752 REMFEN-GFIPSFCIYNELTNGLKQEGK 778 (808)
Q Consensus 752 ~~~~~~-~~~~~~~~~~~l~~~l~~~g~ 778 (808)
.+.... ..+++......++.++...|+
T Consensus 694 ~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 694 LSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 333331 223345666677777776664
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.52 Score=41.01 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=75.0
Q ss_pred HHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 046719 635 IREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVK 713 (808)
Q Consensus 635 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~ 713 (808)
...| ++.|.++.+++ .+...|..|.+.....|+++-|.+.|.+..+ +..+.-.|.-.|+.++-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 4456 77777766553 3566777777777777777777777776643 335555566667766666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 046719 714 ELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEI 789 (808)
Q Consensus 714 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 789 (808)
.+.+.....|- ++....++...|++++++++|.+. |--|.. +..-...|-.+.|..+.+++
T Consensus 81 kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 55555554431 233444555678888888887664 222111 11222346667777777665
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.37 Score=40.21 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHcCCCcCHh-hHHHHHHH------HHhcCChHHHHHHHHHhhh
Q 046719 131 RLSLDSINVLLECLVRCNQY------DRALDLFDEIVCMGFRPDKF-TYGKAVQA------AVKIGDLKRACEIFDGMEK 197 (808)
Q Consensus 131 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~~ 197 (808)
+-|.++|-..+..+-+.|++ +..+.+|+++... .+|+.. .|..-+.. +...+++++|+++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34566666666666666776 6666777766653 222211 11111111 1122455555555555543
Q ss_pred CCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCC
Q 046719 198 SRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLV 236 (808)
Q Consensus 198 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 236 (808)
. .+-=..+|.....--.+.|++..|.+++......++.
T Consensus 89 ~-hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 N-CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp H-CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred H-hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 3 1111334444444444455555555555555544433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.66 E-value=1.8 Score=37.69 Aligned_cols=45 Identities=24% Similarity=0.358 Sum_probs=23.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHh
Q 046719 145 VRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGM 195 (808)
Q Consensus 145 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 195 (808)
...|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555554443 14455555555555555555555555554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=5.8 Score=42.93 Aligned_cols=156 Identities=8% Similarity=0.007 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 046719 417 FNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCK 496 (808)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 496 (808)
|..... ..+.|+++.+..+...+....+. ....|..+.... .....++....+.+-. +.+.....-+..+..+.+
T Consensus 10 ~~~a~~-a~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~--~~p~~~~Lr~~~l~~l~~ 84 (618)
T 1qsa_A 10 YAQIKQ-AWDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANP--TLPPARTLQSRFVNELAR 84 (618)
T ss_dssp HHHHHH-HHHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCC--CChhHHHHHHHHHHHHHh
Confidence 444433 34567887777776655332121 112333332221 1224454444444322 122223334455666777
Q ss_pred cCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH--HHH
Q 046719 497 DCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVM--EAE 574 (808)
Q Consensus 497 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~ 574 (808)
.+++......+.. .+.+...-.....+....|+..+|......+-..|.. .......++..+.+.|.+. ...
T Consensus 85 ~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~~~~~ 158 (618)
T 1qsa_A 85 REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLAYL 158 (618)
T ss_dssp TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHH
T ss_pred CCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCHHHHH
Confidence 7777766654332 2335555566777778888888787777776655422 3445667777777666543 334
Q ss_pred HHHHHHHhC
Q 046719 575 DMLPQITSS 583 (808)
Q Consensus 575 ~~~~~~~~~ 583 (808)
.-++.+...
T Consensus 159 ~R~~~al~~ 167 (618)
T 1qsa_A 159 ERIRLAMKA 167 (618)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 444444443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.11 E-value=9.7 Score=42.99 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=14.8
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHH
Q 046719 207 YNVLISGFCKEKKIRDAEKLFDEMC 231 (808)
Q Consensus 207 ~~~l~~~~~~~g~~~~A~~~~~~m~ 231 (808)
|...+.++.+.++.+.+.++|..+.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555556666666666666655
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.16 Score=43.33 Aligned_cols=129 Identities=11% Similarity=-0.020 Sum_probs=68.7
Q ss_pred CCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHHHHCC-CCCCH-------HHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 652 INLVPDLLVYN--ALIHCYAEHGDVQKALVLHSEMVDQG-IRPDK-------MTYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 652 ~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~g-~~pd~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
.|+.|...+|+ .-+..+...|.++.|+-+.+.+.... ..|+. .++..++.++...|++..|...|+++++
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 35555544333 33556677888888887777755421 23332 1455677888888888888888888643
Q ss_pred C--CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 722 K--GLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 722 ~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
. .+..+..+...+.. ...... ......+.+.-+.++.||.+.|++++|+.+++.++.+.
T Consensus 92 ~~k~l~k~~s~~~~~~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred HHHHHhcCCCccccccc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 1 12111111111100 000000 01123366788899999999999999999988875543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.90 E-value=1.5 Score=36.38 Aligned_cols=74 Identities=11% Similarity=0.109 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH
Q 046719 690 RPDKMTYNSLIFGHLREGK---LSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFC 764 (808)
Q Consensus 690 ~pd~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 764 (808)
.|+..+-..++|++.+... ..+++.+++.+.+.+..-.......|+-++.+.|++++|.++.+.+++..|. +..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~-n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-NKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC-CHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHH
Confidence 4566666677888877765 3467777777776332123445567777888888888888888888887655 443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.63 E-value=2.5 Score=34.48 Aligned_cols=63 Identities=14% Similarity=0.055 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 697 NSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 697 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+..+..+..+|+-++-.+++..+... ..|++.....++.+|.+.|+..+|.+++.++-+.|.+
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33444444455555444444443221 3444445555555555555555555555555544443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.62 E-value=0.75 Score=37.54 Aligned_cols=74 Identities=11% Similarity=0.130 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHhcCCH---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH
Q 046719 690 RPDKMTYNSLIFGHLREGKL---SEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFC 764 (808)
Q Consensus 690 ~pd~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 764 (808)
.|+..+--.++|++.+.... .+++.+++.+.+.+..-....+..|+-++.+.|++++|.++.+.+++..|. +..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~-N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-NKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT-CHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC-CHH
Confidence 34555666777777776653 467777777766431112455667777788888888888888888876555 443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.05 E-value=0.75 Score=50.73 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=26.8
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHH
Q 046719 703 HLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREM 754 (808)
Q Consensus 703 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 754 (808)
|...|+++-|+++.+++.. ..| +..+|..|+.+|.+.||++.|+-.+..+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4445555555555555555 333 3455555555555555555555555443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.51 Score=52.03 Aligned_cols=124 Identities=19% Similarity=0.206 Sum_probs=80.7
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHCCCCcCHHhHH--HHHHHHHHcC--HHHHHHHHHHHHHC------CCCC-CH--
Q 046719 593 NSLISGYSSLGS-SQKCLELYENMKKLGIKPSLRTYH--PLLSGCIREG--IVAVEKLFNEMLQI------NLVP-DL-- 658 (808)
Q Consensus 593 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~--~~~a~~~~~~~~~~------~~~~-~~-- 658 (808)
..++..+...++ ++.|+.+|+++.+. .|...++. .++..+...+ --+|.++..+.++. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 445555555666 58899999999875 34333322 2333333333 44566666665431 1111 11
Q ss_pred --------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 046719 659 --------LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDK-MTYNSLIFGHLREGKLSEVKELVNDMK 720 (808)
Q Consensus 659 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 720 (808)
...+.=++.|...|+++-|+++.++... ..|+. .+|..|+.+|...|+++.|+-.++.+-
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1222224456678999999999999998 56665 499999999999999999999888863
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=91.45 E-value=5 Score=32.75 Aligned_cols=137 Identities=19% Similarity=0.119 Sum_probs=65.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 046719 531 TMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLE 610 (808)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 610 (808)
-.|.+++..++..+..... +..-||.++--....-+-+-..+.++.+-+. -|. ...|+......
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 3566666666666665541 4444454444344444444444444444321 111 22344444333
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 046719 611 LYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGI 689 (808)
Q Consensus 611 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 689 (808)
.+-.+ ..+...+...+..+...| -++-.+++..++.. .+|++.....+..+|.+-|+..+|.+++.++-++|+
T Consensus 83 C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33322 123333444445555555 55555555554332 245555555556666666666666666666655554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.19 E-value=0.64 Score=39.71 Aligned_cols=140 Identities=14% Similarity=0.031 Sum_probs=76.0
Q ss_pred CCCcCHHh--HHHHHHHHHHcC-HHHHHHHHHHHHHCC-CCCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 046719 619 GIKPSLRT--YHPLLSGCIREG-IVAVEKLFNEMLQIN-LVPD-------LLVYNALIHCYAEHGDVQKALVLHSEMVDQ 687 (808)
Q Consensus 619 ~~~p~~~~--~~~l~~~~~~~~-~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 687 (808)
|+.|.... +..=+..+...+ ++.|.-+.+.++... ..|+ ..++..+++++...|++..|...|++.++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 55565433 333455577778 999988888765421 2333 135667789999999999999999998653
Q ss_pred C-CCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHH
Q 046719 688 G-IRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCI 765 (808)
Q Consensus 688 g-~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 765 (808)
. .-+... +...+. ....... .....++...-..+..||.+.|++++|+.+++..-.. .-++.+
T Consensus 93 ~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k--~Rt~kv 157 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR--QRTPKI 157 (167)
T ss_dssp HHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG--GCCHHH
T ss_pred HHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch--hcCHHH
Confidence 1 111111 111110 0000000 0112334556667899999999999999998875322 124555
Q ss_pred HHHHHHHH
Q 046719 766 YNELTNGL 773 (808)
Q Consensus 766 ~~~l~~~l 773 (808)
-..|+..|
T Consensus 158 nm~LakLy 165 (167)
T 3ffl_A 158 NMLLANLY 165 (167)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 55555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=91.05 E-value=6e-05 Score=75.71 Aligned_cols=222 Identities=13% Similarity=0.158 Sum_probs=106.2
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 046719 205 FVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGF 284 (808)
Q Consensus 205 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 284 (808)
.+|..|..+..+.|++.+|++.|-+. -|+..|..+|....+.|.+++-...+...++..- +...=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHH
Confidence 34556666666666666665544222 1444555666666666666666666655544322 223334566666
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHH
Q 046719 285 CKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAE 364 (808)
Q Consensus 285 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 364 (808)
++.+++.+-++.+. .|+..-...+.+-|...|.++.|.-+|..+.. |.-|...+.+.|++..|.
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSST
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHH
Confidence 66666554433321 24555555566666666666666655543322 222333344444444444
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 046719 365 EIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKG 444 (808)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 444 (808)
+.-++ ..+..+|..+-.+|...+++.-|.-.--.+.-. ..-...++..|-..|.+++-+.+++.-...
T Consensus 191 daArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl- 258 (624)
T 3lvg_A 191 DGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL- 258 (624)
T ss_dssp TTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-
T ss_pred HHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-
Confidence 32211 124455555555555555554443322222211 111122344455555555555555544421
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 046719 445 VSPNVKTNNTLIDGYGRM 462 (808)
Q Consensus 445 ~~~~~~~~~~l~~~~~~~ 462 (808)
-......|+-|.-.|++-
T Consensus 259 ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 259 ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp TTCCHHHHHHHHHHHHSS
T ss_pred CchhHHHHHHHHHHHHhc
Confidence 112344555555555543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.36 E-value=5.2 Score=47.48 Aligned_cols=52 Identities=13% Similarity=0.044 Sum_probs=28.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046719 104 ILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEI 160 (808)
Q Consensus 104 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 160 (808)
.++..+...+.++.+.++.... +.+....-.++++|...|++++|...|.++
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444555555555555544332 223444455666666677777777666554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.10 E-value=14 Score=35.67 Aligned_cols=190 Identities=13% Similarity=0.127 Sum_probs=106.1
Q ss_pred hhhhHHHHHHHHhCCCchHHHHHHHHHHhcCCCCCCChhhHHhhhhccCCCCCccHHHHHHHHHHcCCChhHHHHHHHHH
Q 046719 46 RNEQVRKIRILFQNNRTEAAQSLIKSIVLSNASPFTSPHELFSLFSVSSPYYKPTFTNILLSILSSAKLPSEALQLYAST 125 (808)
Q Consensus 46 ~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 125 (808)
.+..+.+++.....|++=+|.+.++++. .-|.+++++++|.+++..-
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~---------------------------------~Ry~~~~~~~eAidlL~~g 59 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIA---------------------------------NRYVRSKSYEHAIELISQG 59 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH---------------------------------HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHH---------------------------------HHHHHhcCHHHHHHHHHHH
Confidence 4567888899999999999999887543 3355667777777775432
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCcCHhhHHHHHHHHHhcCChH-HHHHHHHHhh----
Q 046719 126 KADGTRLSLDSINVLLECLVRCNQYDRALDL----FDEIVCMGFRPDKFTYGKAVQAAVKIGDLK-RACEIFDGME---- 196 (808)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~---- 196 (808)
...+.+.|+...|-.+ .+-..+.+..++......++..+.....-+ .=.++.++++
T Consensus 60 ---------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~ 124 (312)
T 2wpv_A 60 ---------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSI 124 (312)
T ss_dssp ---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHh
Confidence 1223344444444332 333444556666666666666554422111 1122222222
Q ss_pred hCC--CCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHhCCCC
Q 046719 197 KSR--TRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKV---GEFEKVSALRERMKRDKVE 271 (808)
Q Consensus 197 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~ 271 (808)
+.| ..-+......+...|.+.|++.+|+.-|-.- ..-|...+..++.-+.+. |...++--..-+
T Consensus 125 ~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R------- 193 (312)
T 2wpv_A 125 KFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR------- 193 (312)
T ss_dssp HTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH-------
T ss_pred hcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH-------
Confidence 222 1236667788888888888888888876421 111355555555555444 444333222111
Q ss_pred cCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 272 VSLVMFNSLLGGFCKAKRMEEAKSVCKEMEA 302 (808)
Q Consensus 272 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 302 (808)
.+-.|.-.|+...|..+|+...+
T Consensus 194 --------aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 194 --------LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp --------HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred --------HHHHHHHhcCHHHHHHHHHHHHH
Confidence 12234456777777777776543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.94 E-value=2.8 Score=42.58 Aligned_cols=57 Identities=7% Similarity=0.064 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 046719 139 VLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGME 196 (808)
Q Consensus 139 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 196 (808)
.++..+...|++++|...+..+....+- +...|..++.++.+.|+..+|++.|+++.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555444333 44555555555555555555555555543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.12 E-value=26 Score=36.14 Aligned_cols=96 Identities=13% Similarity=0.045 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCH--H
Q 046719 522 YNMLIDGSCTMGRIKDAFKFFDEMVKR--EMGPT---LVTFNALINGLCKKGRVMEAEDMLPQITS----SGLNPDV--I 590 (808)
Q Consensus 522 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~--~ 590 (808)
...|...+...|++.+|..++..+... +.... ...+..-+..|...+++..|..++.++.. ....|+. .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345666677777777777777776543 21111 33455566677777777777777776532 2112221 3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 046719 591 TYNSLISGYSSLGSSQKCLELYENMKK 617 (808)
Q Consensus 591 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 617 (808)
.|..++..+...+++.+|.+.|.++..
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 455666666777777777777776654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.02 E-value=21 Score=34.82 Aligned_cols=81 Identities=14% Similarity=0.132 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 656 PDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILV 735 (808)
Q Consensus 656 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 735 (808)
-|+.....+...|.+.|++.+|...|- . |-.+....+..++.-+...+...++--++-+ .+
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~dlfiaR---------------aV 194 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTAPLYCAR---------------AV 194 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGHHHHHHH---------------HH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccHHHHHHH---------------HH
Confidence 467788889999999999999998873 1 3333334554444333333322222222111 22
Q ss_pred HHHHccCChhHHHHHHHHHH
Q 046719 736 KGYCNLKDFGGAYIWYREMF 755 (808)
Q Consensus 736 ~~~~~~g~~~~A~~~~~~~~ 755 (808)
--|.-.++...|..+++...
T Consensus 195 L~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 23455778888877665554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=86.83 E-value=38 Score=36.59 Aligned_cols=143 Identities=9% Similarity=0.063 Sum_probs=79.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 046719 381 MFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPN-VKTNNTLIDGY 459 (808)
Q Consensus 381 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 459 (808)
.|.....+ .+.|++..+..+...+...-+. .-..|..|...+ .....++...++. +..-.|- ...-+..+..+
T Consensus 9 ~~~~a~~a-~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~---~~~~~p~~~~Lr~~~l~~l 82 (618)
T 1qsa_A 9 RYAQIKQA-WDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVR---ANPTLPPARTLQSRFVNEL 82 (618)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHH---HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHH---HCCCChhHHHHHHHHHHHH
Confidence 34444443 4678888887776665432121 112333333222 1224454444443 3321222 22334455667
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCH
Q 046719 460 GRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRI 535 (808)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 535 (808)
.+.+++...+..+.. .+.+...-.....+....|+..+|......+-..|.. .+..+..++..+.+.|.+
T Consensus 83 ~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 83 ARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCS
T ss_pred HhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCC
Confidence 778888776664432 2446666667778888899988888877777655433 455667777777665554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.67 E-value=1.5 Score=40.89 Aligned_cols=59 Identities=19% Similarity=0.072 Sum_probs=46.6
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 701 FGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 701 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
..+.+.|.+++|+..+..-++.. +-|...-..++..+|-.|+|+.|.+-++-+.+..+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 45677889999998888887742 336777788888999999999999998888877543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.91 E-value=27 Score=34.01 Aligned_cols=191 Identities=14% Similarity=0.071 Sum_probs=102.2
Q ss_pred cchhhhHHHHHHHHhCCCc---hHHHHHHHHHHhcCCCCCCChhhHHhhhhccCCCCCccHHHHHHHHHHcCCChhHHHH
Q 046719 44 QERNEQVRKIRILFQNNRT---EAAQSLIKSIVLSNASPFTSPHELFSLFSVSSPYYKPTFTNILLSILSSAKLPSEALQ 120 (808)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~---~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 120 (808)
+..+..+.+++.....|++ -+|.+.++++. .-|.+++++++|.+
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~---------------------------------~Ry~~~k~y~eAid 56 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVA---------------------------------ARYSKQGNWAAAVD 56 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------------------------------HHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHH---------------------------------HHHHhhcCHHHHHH
Confidence 3456788889999999999 88888877532 23566777888877
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCcCHhhHHHHHHHHHhcCChHH-HHHHHHHh
Q 046719 121 LYASTKADGTRLSLDSINVLLECLVRCNQYDRALDL----FDEIVCMGFRPDKFTYGKAVQAAVKIGDLKR-ACEIFDGM 195 (808)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~ 195 (808)
++..- ...+.+.|+...|-.+ .+-..+.+.++|......++..+.....-+- =..+.+++
T Consensus 57 LL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~a 121 (336)
T 3lpz_A 57 ILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEM 121 (336)
T ss_dssp HHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Confidence 65332 1223344444443332 2334445566666666666665544332111 11122222
Q ss_pred h----hCC--CCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046719 196 E----KSR--TRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDK 269 (808)
Q Consensus 196 ~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 269 (808)
+ +.| ..-|......+...|.+.+++.+|+.-|- . |..+.+..+..++.-+.+.+...++--.+
T Consensus 122 i~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~dlfi------- 190 (336)
T 3lpz_A 122 IDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTAPLYC------- 190 (336)
T ss_dssp HHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGHHHHH-------
T ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccHHHHH-------
Confidence 2 112 22355666777788888888888877762 2 22333356655554444443322221111
Q ss_pred CCcCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 046719 270 VEVSLVMFNSLLGGFCKAKRMEEAKSVCKEME 301 (808)
Q Consensus 270 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 301 (808)
-. .+--|.-.+++..|..+|+...
T Consensus 191 -------aR-aVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 191 -------AR-AVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp -------HH-HHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------HH-HHHHHHHhCCHHHHHHHHHHHH
Confidence 11 1222445567777766665554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.83 E-value=13 Score=44.06 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=28.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHh
Q 046719 140 LLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGM 195 (808)
Q Consensus 140 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 195 (808)
++..+...+.++.|..+..... .+....-.+.+++...|++++|...|.+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4455556666666555443321 13444344555666777777777777665
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.55 E-value=36 Score=35.11 Aligned_cols=93 Identities=19% Similarity=0.193 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCcc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHH
Q 046719 489 SLINWLCKDCKLLEAEIVLKDMENR--GVLPN---AQIYNMLIDGSCTMGRIKDAFKFFDEMVKR----EMGPT--LVTF 557 (808)
Q Consensus 489 ~ll~~~~~~~~~~~A~~~~~~m~~~--~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~ 557 (808)
.|...+...|++.+|..++..+... +.... ...+...++.|...+++..|..++.++... ..+|+ ...+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 3444455555555555555554321 11111 223444555666666666666666655321 11111 2234
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 046719 558 NALINGLCKKGRVMEAEDMLPQIT 581 (808)
Q Consensus 558 ~~l~~~~~~~g~~~~A~~~~~~~~ 581 (808)
...+..+...+++.+|...|.++.
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445555566666666666666554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.16 E-value=2.9 Score=42.49 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHH-----CCCCCCHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFE-----NGFIPSFCIYNE 768 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 768 (808)
....++..+...|++++|+..+..+.. ..| +...|..++.++.+.|+..+|++.|+++.+ .|..|.+..-..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 455677888899999999999998877 455 677888999999999999999999988753 588888775443
Q ss_pred H
Q 046719 769 L 769 (808)
Q Consensus 769 l 769 (808)
.
T Consensus 251 ~ 251 (388)
T 2ff4_A 251 N 251 (388)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.28 E-value=4 Score=38.10 Aligned_cols=57 Identities=23% Similarity=0.221 Sum_probs=34.9
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 046719 668 YAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK 727 (808)
Q Consensus 668 ~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 727 (808)
..+.|++++|++....-++. -+-|...-..|+..+|-.|++++|.+-++.+.+ +.|+
T Consensus 7 ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGG
T ss_pred HHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCch
Confidence 45566677777666666664 233444555666667777777777766666665 4454
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.79 E-value=7.8 Score=29.67 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 711 EVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELT 770 (808)
Q Consensus 711 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 770 (808)
+..+-++.+...++.|++.+....+.+|.+.+|+.-|.++++-.....-. ...+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~-~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-chhhHHHHH
Confidence 45556666666667777777777777777778888887777766543222 234444443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=80.94 E-value=7.6 Score=29.73 Aligned_cols=63 Identities=11% Similarity=0.198 Sum_probs=44.0
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 046719 219 KIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLG 282 (808)
Q Consensus 219 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 282 (808)
+.-+.++-+..+......|++....+.+.+|.|.+++.-|.++|+.++.. +.....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34456677777777778888888888888888888888888888877654 2222344555544
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.14 E-value=10 Score=39.04 Aligned_cols=119 Identities=13% Similarity=0.027 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHH
Q 046719 639 IVAVEKLFNEMLQINL-VP-DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD--KMTYNSLIFGHLREGKLSEVKE 714 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd--~~~~~~l~~~~~~~g~~~~A~~ 714 (808)
.++-.+......+... .. -...+..++..|.+.|++++|.+.|.++.+.-..+. ...+..++..+...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 4444444444444221 12 123556677788888888888888888876422222 2356677777778888888888
Q ss_pred HHHHHHH---CCCCCCHHH--HHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 715 LVNDMKV---KGLIPKADT--YNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 715 ~~~~~~~---~g~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
.++++.. .+-.|+... ...-+..+...++|.+|...|-++...
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 8777642 222222221 112233344567788887777776653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 808 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.28 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.22 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.19 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.18 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.11 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.09 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.08 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.07 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.05 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.01 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.89 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.89 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.79 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.78 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.72 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.7 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.69 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.67 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.64 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.64 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.64 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.63 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.61 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.55 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.52 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.48 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.47 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.45 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.39 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.38 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.35 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.32 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.3 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.19 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.18 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.12 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.11 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.08 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.01 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.89 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.86 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.84 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.8 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.78 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.76 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.66 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.62 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.47 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.21 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.18 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.71 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.37 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.8 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.36 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 89.58 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 84.05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.1e-21 Score=204.67 Aligned_cols=382 Identities=14% Similarity=0.068 Sum_probs=231.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 350 LLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGE 429 (808)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 429 (808)
+...+.+.|++++|.+.++++++..+. +...+..+...|.+.|++++|+..|+++.+..+. +..+|..+...+...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcc
Confidence 334445555555555555555544322 3444555555555555555555555555444322 34444445555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 046719 430 MDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKD 509 (808)
Q Consensus 430 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 509 (808)
+++|+..+....+... .+..............+....+......
T Consensus 83 ~~~A~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKP------------------------------------DFIDGYINLAAALVAAGDMEGAVQAYVS 126 (388)
T ss_dssp HHHHHHHHHHHHHHCT------------------------------------TCHHHHHHHHHHHHHHSCSSHHHHHHHH
T ss_pred cccccccccccccccc------------------------------------cccccccccccccccccccccccccccc
Confidence 5555555554444322 2222222222223333333333333333
Q ss_pred HHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 046719 510 MENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDV 589 (808)
Q Consensus 510 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 589 (808)
..... .................+....+...+....... +.+...+..+...+...|++++|...+++..+.. +.+.
T Consensus 127 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~ 203 (388)
T d1w3ba_ 127 ALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFL 203 (388)
T ss_dssp HHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred ccccc-cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccH
Confidence 22221 1133333344444455555555555555555432 2245555556666666666666666666665532 2234
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 590 ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCY 668 (808)
Q Consensus 590 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 668 (808)
..|..+...+...|++++|+..+++..... +.+...+..+...+...| +++|.+.|+++++.. +.+...+..++..+
T Consensus 204 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 281 (388)
T d1w3ba_ 204 DAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHH
T ss_pred HHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 556666666666677777776666666532 334455555566666666 667777777666643 34567788888888
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHH
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A 747 (808)
...|++++|++.++..... .+.+...+..++.++...|++++|++.++++++ +.| +..++..++.++.+.|++++|
T Consensus 282 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A 358 (388)
T d1w3ba_ 282 KEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999988875 344666888889999999999999999999887 456 467788899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 748 YIWYREMFENGFIPSFCIYNELTNGLKQEGK 778 (808)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 778 (808)
+..|+++++..|. +..++..++.+|.+.|+
T Consensus 359 ~~~~~~al~l~P~-~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 359 LMHYKEAIRISPT-FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 9999999988766 78889999999988775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=6.6e-21 Score=198.71 Aligned_cols=381 Identities=14% Similarity=0.102 Sum_probs=252.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 046719 315 LFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGD 394 (808)
Q Consensus 315 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 394 (808)
+...+.+.|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...++++++..+. +..+|..+...|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcc
Confidence 5677889999999999999998874 336778888999999999999999999999987654 67889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 046719 395 LNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEE 474 (808)
Q Consensus 395 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 474 (808)
+++|+..+....+.... +..............+....+............. ...............+....+...+.+
T Consensus 83 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHH
Confidence 99999999999887544 4455555555555566666666655555544322 334444455555666666666666666
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 046719 475 MENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTL 554 (808)
Q Consensus 475 m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 554 (808)
..... +.+...+..+...+...|++++|...+.+..+.... +...+..+...+...|++++|+..++...... +.+.
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 237 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence 55431 333444555555555555555555555555443211 33444445555555555555555555444432 2233
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 046719 555 VTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGC 634 (808)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 634 (808)
..+..+.. .+.+.|++++|+..|++..+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~-----------------------------------~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 281 (388)
T d1w3ba_ 238 VVHGNLAC-----------------------------------VYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHH-----------------------------------HHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHH-----------------------------------HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44444444 4444455555555554444421 12234444444445
Q ss_pred HHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHH
Q 046719 635 IREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEV 712 (808)
Q Consensus 635 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A 712 (808)
...| +++|.+.++...... +.+...+..++.++...|++++|++.|+++++ +.|+ ..++..++.++...|++++|
T Consensus 282 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A 358 (388)
T d1w3ba_ 282 KEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5555 555555555554432 55667778888888899999999999999887 4554 45788899999999999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHccCC
Q 046719 713 KELVNDMKVKGLIP-KADTYNILVKGYCNLKD 743 (808)
Q Consensus 713 ~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 743 (808)
+..++++++ +.| +...|..++.+|.+.||
T Consensus 359 ~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 359 LMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 999999887 567 47788889988888776
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=7.7e-14 Score=140.29 Aligned_cols=269 Identities=14% Similarity=0.075 Sum_probs=163.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 046719 490 LINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGR 569 (808)
Q Consensus 490 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 569 (808)
....+.+.|++++|...|+++.+..+. +..+|..+..++...|++++|+..|++.++.. +.+...+..+...|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 344455555555555555555554322 44455555555555555555555555555432 2234555555555555555
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHH
Q 046719 570 VMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNE 648 (808)
Q Consensus 570 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~ 648 (808)
+++|.+.++++... .|+............. ..+.......+..+...+ ..++.+.+.+
T Consensus 103 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 103 QRQACEILRDWLRY--TPAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp HHHHHHHHHHHHHT--STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHh--ccchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 55555555555542 1221100000000000 000000111112223334 6778888888
Q ss_pred HHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 046719 649 MLQINL-VPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP 726 (808)
Q Consensus 649 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 726 (808)
.++... ..+...+..+...+...|++++|+..+++.++. .| +...|..++.++...|++++|++.++++++ +.|
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p 237 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQP 237 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCT
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHH--Hhh
Confidence 776432 235677888888999999999999999999884 45 455888999999999999999999999887 456
Q ss_pred -CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCChhHHHHH
Q 046719 727 -KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP----------SFCIYNELTNGLKQEGKLKEAQIL 785 (808)
Q Consensus 727 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~l~~~l~~~g~~~~A~~~ 785 (808)
+...|..++.+|.+.|++++|+..|+++++..|.- ....+..+..++...|+.+.+...
T Consensus 238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 47778899999999999999999999998753321 112445566777777777655443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=7.1e-14 Score=140.56 Aligned_cols=251 Identities=12% Similarity=0.002 Sum_probs=192.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 046719 523 NMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSL 602 (808)
Q Consensus 523 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 602 (808)
-.....+.+.|++++|+..|+++++.. +.+..+|..+...+...|++++|...|.+..+.. +-+...|..++..|...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 346677889999999999999999863 4468889999999999999999999999988753 23567888889999999
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 046719 603 GSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHS 682 (808)
Q Consensus 603 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 682 (808)
|++++|.+.++++... .|+............. ..+.......+..+...+.+.+|.+.+.
T Consensus 101 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 101 SLQRQACEILRDWLRY--TPAYAHLVTPAEEGAG------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp TCHHHHHHHHHHHHHT--STTTGGGCC---------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHh--ccchHHHHHhhhhhhh------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 9999999999998874 3432221110000000 0000111112223345567888999999
Q ss_pred HHHHCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 683 EMVDQG-IRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 683 ~~~~~g-~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
++++.. -.++..++..++..+...|++++|+..++++++ ..| +...|..++.++...|++++|++.++++++..|.
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccc--cccccccchhhhhhcccccccchhHHHHHHHHHHHhhc
Confidence 888732 122456788999999999999999999999987 445 5788999999999999999999999999998776
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 761 PSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 761 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+..++..++.+|.+.|++++|+..++++++..|++..
T Consensus 239 -~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 275 (323)
T d1fcha_ 239 -YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 275 (323)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred -cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChh
Confidence 7899999999999999999999999999997776543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.6e-10 Score=114.06 Aligned_cols=230 Identities=8% Similarity=0.006 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 046719 554 LVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLG-SSQKCLELYENMKKLGIKPSLRTYHPLLS 632 (808)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 632 (808)
...++.+...+.+.+++++|++.++++++.. +-+...|+....++...| ++++|+..+++..+.. +-+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 5566777777888889999999999998853 224567888888877766 4899999999888742 345777888888
Q ss_pred HHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC--
Q 046719 633 GCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGK-- 708 (808)
Q Consensus 633 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~-- 708 (808)
.+...| +++|.+.++++++.. +.+...|..++..+...|++++|++.++++++ +.| +...|+.++.++...+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHHHHHHHHHccccc
Confidence 888888 888899998888864 55678888888888888999999999999888 455 45578888777776665
Q ss_pred ----HhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc--CChh
Q 046719 709 ----LSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP-SFCIYNELTNGLKQE--GKLK 780 (808)
Q Consensus 709 ----~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~--g~~~ 780 (808)
+++|++.+.++++ +.| +...|..+...+. ....+++.+.++++.+..+.+ +...+..++.+|... ++.+
T Consensus 198 ~~~~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~ 274 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 274 (315)
T ss_dssp SHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hhhhhHHhHHHHHHHHH--hCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHH
Confidence 5788888888877 445 5667777766554 444678888888887765543 344555666666443 5666
Q ss_pred HHHHHHHHHHH
Q 046719 781 EAQILCSEISI 791 (808)
Q Consensus 781 ~A~~~~~~~~~ 791 (808)
.+...+++..+
T Consensus 275 ~~~~~~~ka~~ 285 (315)
T d2h6fa1 275 NKEDILNKALE 285 (315)
T ss_dssp SHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=3.1e-09 Score=107.51 Aligned_cols=293 Identities=10% Similarity=0.005 Sum_probs=166.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcc----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC---CCHHHHHHHHHH
Q 046719 493 WLCKDCKLLEAEIVLKDMENRGVLPN----AQIYNMLIDGSCTMGRIKDAFKFFDEMVKRE--MG---PTLVTFNALING 563 (808)
Q Consensus 493 ~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~---~~~~~~~~l~~~ 563 (808)
.+...|++++|..++++..+.....+ ...+..+...+...|++++|+..|++..+.. .. .....+..+...
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 34445555555555555444321111 1234445555556666666666665554321 00 012233444555
Q ss_pred HHhcCChHHHHHHHHHHHh----CCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC----cCHHhHHHHHH
Q 046719 564 LCKKGRVMEAEDMLPQITS----SGLNPD---VITYNSLISGYSSLGSSQKCLELYENMKKLGIK----PSLRTYHPLLS 632 (808)
Q Consensus 564 ~~~~g~~~~A~~~~~~~~~----~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~ 632 (808)
+...|++..+...+..... .+.... ...+..+...+...|+++.+...+......... .....+.....
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 6666666666666655432 111111 123445556666677777777777666643211 11223333334
Q ss_pred HHHHcC-HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 046719 633 GCIREG-IVAVEKLFNEMLQI----NLVP--DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD---KMTYNSLIFG 702 (808)
Q Consensus 633 ~~~~~~-~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd---~~~~~~l~~~ 702 (808)
.+...+ ...+...+.+.... +..+ ....+..+...+...|++++|...+++..+.....+ ...+..++.+
T Consensus 181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 260 (366)
T d1hz4a_ 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 260 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 444555 66666655554431 1111 123456667778888999999999888765422211 2356678889
Q ss_pred HHhcCCHhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCC----CC----CCHHHHHHH
Q 046719 703 HLREGKLSEVKELVNDMKV----KGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENG----FI----PSFCIYNEL 769 (808)
Q Consensus 703 ~~~~g~~~~A~~~~~~~~~----~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~----~~~~~~~~l 769 (808)
+...|++++|...+++++. .+..|+ ..++..++.+|...|++++|.+.++++++.. .. .....+..+
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~ 340 (366)
T d1hz4a_ 261 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ 340 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHH
Confidence 9999999999999988753 233343 4567788999999999999999999987642 11 022345556
Q ss_pred HHHHHhcCChhHHHHH
Q 046719 770 TNGLKQEGKLKEAQIL 785 (808)
Q Consensus 770 ~~~l~~~g~~~~A~~~ 785 (808)
...+...|+.+++.+.
T Consensus 341 ~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 341 LRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHTTCSCHHHHH
T ss_pred HHHHHhcCCChHHHHH
Confidence 6677777877777654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=5.1e-09 Score=105.89 Aligned_cols=273 Identities=12% Similarity=0.034 Sum_probs=200.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHH
Q 046719 521 IYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPT----LVTFNALINGLCKKGRVMEAEDMLPQITSSGL-NPD----VIT 591 (808)
Q Consensus 521 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~ 591 (808)
........+...|++++|+.++++.++.....+ ..++..+...|...|++++|...+++..+... .++ ...
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 344456677899999999999999988632212 34677788899999999999999998865211 112 245
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCcC---HHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCC----CCCHH
Q 046719 592 YNSLISGYSSLGSSQKCLELYENMKKL----GIKPS---LRTYHPLLSGCIREG-IVAVEKLFNEMLQINL----VPDLL 659 (808)
Q Consensus 592 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~---~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~----~~~~~ 659 (808)
+..+...+...|++..+...+.+.... ..... ...+..+...+...| ++.+...+........ .....
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 667777889999999999999887642 11111 234445566677888 9999999988876321 22345
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC---HHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQ----GIRPD--KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK---ADT 730 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~ 730 (808)
.+..+...+...|++.++...+.+.... +..+. ...+..++..+...|++++|...+++..+.....+ ...
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 5666777788899999999998877652 11111 22566778889999999999999999876322222 345
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMFE----NGFIP-SFCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
+..++.++...|++++|...+++++. .+..| ....+..++.+|...|++++|.+.++++++..
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~ 321 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 321 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 66789999999999999999999874 23333 35678889999999999999999999987753
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=1.6e-09 Score=106.66 Aligned_cols=230 Identities=12% Similarity=0.066 Sum_probs=178.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046719 519 AQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKG-RVMEAEDMLPQITSSGLNPDVITYNSLIS 597 (808)
Q Consensus 519 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 597 (808)
...++.+...+.+.+..++|+++++++++.. +-+..+|+....++...| ++++|+..++..++.. +-+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 3467777788889999999999999999974 336788899988888877 5899999999998853 336789999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---
Q 046719 598 GYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGD--- 673 (808)
Q Consensus 598 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 673 (808)
.+.+.|++++|+..++++++.. +.+...|..+...+...| +++|.+.++++++.+ +.+...|+.+..++.+.|.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence 9999999999999999999853 456888999999999999 999999999999975 4567788888777766655
Q ss_pred ---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc--cCChhH
Q 046719 674 ---VQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCN--LKDFGG 746 (808)
Q Consensus 674 ---~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~--~g~~~~ 746 (808)
+++|++.+.++++. .| +...|+.+...+... ..+++.+.++.+.+....+ +...+..++.+|.. .++.+.
T Consensus 199 ~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~ 275 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 275 (315)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHH
Confidence 68999999999984 55 566788887776554 4688888888887632222 34555566666543 255555
Q ss_pred HHHHHHHHH
Q 046719 747 AYIWYREMF 755 (808)
Q Consensus 747 A~~~~~~~~ 755 (808)
+...++++.
T Consensus 276 ~~~~~~ka~ 284 (315)
T d2h6fa1 276 KEDILNKAL 284 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655555554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=2.6e-09 Score=102.44 Aligned_cols=199 Identities=12% Similarity=-0.049 Sum_probs=94.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 046719 592 YNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAE 670 (808)
Q Consensus 592 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 670 (808)
|..+...|.+.|++++|+..|++.++.. +-+..++..+...+...| +++|.+.|+++++.. +.+...+..++.+|..
T Consensus 40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 40 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHH
Confidence 3333444444444444444444444321 122334444444444444 444444444444432 2234456666666777
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----CChh
Q 046719 671 HGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNL----KDFG 745 (808)
Q Consensus 671 ~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~----g~~~ 745 (808)
.|++++|++.|++.++. .| +......+..++...+..+.+..+....... .++...+.. +..+... +..+
T Consensus 118 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWNI-VEFYLGNISEQTLME 192 (259)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHHH-HHHHTTSSCHHHHHH
T ss_pred HhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--chhhhhhhH-HHHHHHHHHHHHHHH
Confidence 77777777777777663 33 3333334444445555444444444444432 222212211 1111111 1122
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 746 GAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 746 ~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.+...+.......+. ....+..++..+...|++++|...+++++..+|++..
T Consensus 193 ~~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 244 (259)
T d1xnfa_ 193 RLKADATDNTSLAEH-LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 244 (259)
T ss_dssp HHHHHCCSHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred HHHHHHHHhhhcCcc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence 222222222222111 2345666777777777777777777777777777654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.09 E-value=1.4e-08 Score=99.93 Aligned_cols=151 Identities=9% Similarity=0.067 Sum_probs=79.5
Q ss_pred hHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 046719 185 LKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRER 264 (808)
Q Consensus 185 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 264 (808)
.++|..+|++.++...+.+...|...+..+.+.|+++.|..+|+++.+.........|...+..+.+.|+.+.|..+|+.
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 45566666666654333344555666666666666666666666666543332344566666666666666666666666
Q ss_pred HHhCCCCcCHHHHHHHHH-HHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 046719 265 MKRDKVEVSLVMFNSLLG-GFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSG 337 (808)
Q Consensus 265 ~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 337 (808)
+.+.++... ..|..... .+...|+.+.|..+|+.+.+. .+.+...|...++.+...|+++.|+.+|++...
T Consensus 160 al~~~~~~~-~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 160 AREDARTRH-HVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHTSTTCCT-HHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhCCCcH-HHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 655433222 22222222 223345556666666655553 122344455555555555555555555555444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=2.6e-10 Score=114.37 Aligned_cols=264 Identities=6% Similarity=-0.079 Sum_probs=124.6
Q ss_pred CCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHH---hcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 046719 498 CKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSC---TMG-------RIKDAFKFFDEMVKREMGPTLVTFNALINGLCKK 567 (808)
Q Consensus 498 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~---~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 567 (808)
+..++|..++.+..+.++. +...|+..-..+. ..+ ++++|+.+++..++.. +.+...|..+..++...
T Consensus 43 ~~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHh
Confidence 3346666666666654222 3333433322222 221 2455666666555542 22455555555554444
Q ss_pred C--ChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHH
Q 046719 568 G--RVMEAEDMLPQITSSGLNPDVITYN-SLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVE 643 (808)
Q Consensus 568 g--~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~ 643 (808)
+ ++++|...+.++.+.. +++...+. .....+...+.+++|+..++++++.. +-+...|..+...+...| +++|.
T Consensus 121 ~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHH
Confidence 3 3556666666655532 22333332 23344445566666666666555432 223444555555555555 44444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 046719 644 KLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKG 723 (808)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 723 (808)
..+.+..+. .|+ .......+...+..+++...+.+..... +++...+..++..+...|+..+|...+.+..+
T Consensus 199 ~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 270 (334)
T d1dcea1 199 PQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEP-- 270 (334)
T ss_dssp SCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--
T ss_pred HHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 333332221 111 1112222333444555555555555531 22333444555555555566666666655544
Q ss_pred CCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 724 LIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLK 774 (808)
Q Consensus 724 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 774 (808)
..| +..+|..++.++...|++++|+++++++++.+|. +...|..|...+.
T Consensus 271 ~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~-~~~y~~~L~~~~~ 321 (334)
T d1dcea1 271 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRSKFL 321 (334)
T ss_dssp TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHh
Confidence 223 2344555566666666666666666666655443 3444444544443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.07 E-value=2.7e-08 Score=97.74 Aligned_cols=190 Identities=12% Similarity=0.108 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 046719 606 QKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEM 684 (808)
Q Consensus 606 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 684 (808)
++|..+|++.++...+.+...+...+......| .+.+..+|+++++........+|...+..+.+.|++++|.++|+++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 444444554443222222333333444444444 5555555555544321122334555555555556666666666665
Q ss_pred HHCCCCCCHHHHHHHHHH-HHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC-C-
Q 046719 685 VDQGIRPDKMTYNSLIFG-HLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFI-P- 761 (808)
Q Consensus 685 ~~~g~~pd~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~- 761 (808)
++.+ +.+...|...+.. +...|+.+.|..+|+.+++. .+.+...|...+..+...|+++.|..+|+++++..+. |
T Consensus 161 l~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 5531 1122233333322 22345556666666665542 1223455555666666666666666666666554332 1
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 046719 762 -SFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAW 797 (808)
Q Consensus 762 -~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 797 (808)
....|...+..-...|+.+.+.++.+++.+.-|+..
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 123455555555555666666666666655554443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.05 E-value=8.3e-10 Score=110.54 Aligned_cols=217 Identities=9% Similarity=-0.075 Sum_probs=104.4
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCcCHHhHHHHH-HHHHHcC-HHHHHH
Q 046719 569 RVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLG--SSQKCLELYENMKKLGIKPSLRTYHPLL-SGCIREG-IVAVEK 644 (808)
Q Consensus 569 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~~-~~~a~~ 644 (808)
++++|+.+++...+.. +.+...|..+..++...+ ++++|+..++++.+.. +++...+.... ..+...+ .++|.+
T Consensus 88 ~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~ 165 (334)
T d1dcea1 88 LVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELA 165 (334)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHH
Confidence 3455555555555432 223444444444444433 2555555555555431 22233332222 3333344 555665
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 046719 645 LFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGL 724 (808)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 724 (808)
.++++++.+ +.+...|+.+..++.+.|++++|...+++..+ +.|+. ..+...+...+..+++...+.......
T Consensus 166 ~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~- 238 (334)
T d1dcea1 166 FTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR- 238 (334)
T ss_dssp HHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-
Confidence 555555543 33445555555555555555555544444333 11211 112222333444555555555554421
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 725 IPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 725 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
.++...+..++..+...|++++|+..+.+..+.+|. +...+..++.++...|+.++|.++++++++.+|+
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~ 308 (334)
T d1dcea1 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 308 (334)
T ss_dssp CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc
Confidence 122333444455555555566666665555554433 4555555566666666666666666666655554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=6.1e-09 Score=99.81 Aligned_cols=116 Identities=11% Similarity=-0.092 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhCCCCc---chhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 046719 500 LLEAEIVLKDMENRGVLP---NAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDM 576 (808)
Q Consensus 500 ~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 576 (808)
.+.++..+++........ ...+|..+...|.+.|++++|+..|++.++.. +.+..+|+.+..+|.+.|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 344455555554432111 12345555566666666666666666666542 22455666666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 046719 577 LPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKK 617 (808)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 617 (808)
|+++++.. +.+..+|..+..+|...|++++|...|++..+
T Consensus 94 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 94 FDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66666532 11344555555666666666666666666554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1e-08 Score=83.69 Aligned_cols=97 Identities=14% Similarity=-0.005 Sum_probs=56.6
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 699 LIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG 777 (808)
Q Consensus 699 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 777 (808)
-+..+...|++++|+..|+++++ ..| +...|..++.++.+.|++++|+..++++++.+|. ++..|..++.++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHcc
Confidence 44555556666666666666555 233 3455556666666666666666666666665554 5556666666666666
Q ss_pred ChhHHHHHHHHHHHcCCCCCc
Q 046719 778 KLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 778 ~~~~A~~~~~~~~~~~~~~~~ 798 (808)
++++|+..++++++..|++..
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~ 106 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQ 106 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHH
T ss_pred CHHHHHHHHHHHHHhCCCCHH
Confidence 666666666666665555433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=2.9e-08 Score=89.15 Aligned_cols=124 Identities=11% Similarity=-0.056 Sum_probs=67.6
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCh
Q 046719 666 HCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDF 744 (808)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~ 744 (808)
..+...|++++|++.|+++ .+|+..+|..++.++...|++++|++.|+++++ +.| +...|..++.++.+.|++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccH
Confidence 3445556666666655543 234445555566666666666666666666655 334 345555666666666666
Q ss_pred hHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 745 GGAYIWYREMFENGFIP---------------SFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 745 ~~A~~~~~~~~~~~~~~---------------~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
++|++.|+++++..... ...++..++.++.+.|++++|...+++++...++
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 66666666655431110 0234455556666666666666666666555444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=6.5e-08 Score=78.71 Aligned_cols=106 Identities=16% Similarity=0.060 Sum_probs=91.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 046719 663 ALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNL 741 (808)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 741 (808)
.-++.+.+.|++++|+..|+++++. .| +...|..++.++...|++++|+..++++++.+ +.+...|..++.++...
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHc
Confidence 3467788999999999999999984 45 55689999999999999999999999999842 33688899999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 742 KDFGGAYIWYREMFENGFIPSFCIYNELTNG 772 (808)
Q Consensus 742 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 772 (808)
|++++|+..|+++++..|. ++..+..+..+
T Consensus 85 ~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~l 114 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKHEAN-NPQLKEGLQNM 114 (117)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 9999999999999998777 77777666554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=6e-08 Score=84.27 Aligned_cols=120 Identities=13% Similarity=0.053 Sum_probs=99.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 046719 661 YNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGY 738 (808)
Q Consensus 661 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~ 738 (808)
+...+..|.+.|++++|+..|+++++. .| +...|..++.++...|++++|+..|+++++ +.| +...|..++.++
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~~~ 88 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHH--HcccchHHHHHHHHHH
Confidence 344567788999999999999999994 55 555899999999999999999999999998 556 467899999999
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHH
Q 046719 739 CNLKDFGGAYIWYREMFENGFIPSFCIYNELTNG--LKQEGKLKEAQIL 785 (808)
Q Consensus 739 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--l~~~g~~~~A~~~ 785 (808)
...|++++|+..++++++..|. +...+..+..+ +...+++++|...
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998776 67777666655 3444556666654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.72 E-value=2.8e-08 Score=90.76 Aligned_cols=100 Identities=8% Similarity=-0.011 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHH
Q 046719 656 PDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNI 733 (808)
Q Consensus 656 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~ 733 (808)
|+...+...+..|.+.|++++|+..|+++++. .| +...|..++.+|.+.|++++|+..++++++ +.| +..+|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHH
Confidence 66667777888999999999999999999884 45 555888999999999999999999999987 667 4778889
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 734 LVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 734 l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
++.+|.+.|++++|+..|+++++..|
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~l~p 103 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYSLAK 103 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999887654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=7.9e-08 Score=83.48 Aligned_cols=100 Identities=13% Similarity=-0.005 Sum_probs=92.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLK 774 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 774 (808)
+...+..|.+.|++++|+..|+++++ +.| +...|..++.++...|++++|+..|+++++.+|. +..++..++.++.
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccc--cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHH
Confidence 44567889999999999999999998 456 5788999999999999999999999999999877 8899999999999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCc
Q 046719 775 QEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 775 ~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
..|++++|...+++++...|++..
T Consensus 90 ~~g~~~eA~~~~~~a~~~~p~~~~ 113 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKVKPHDKD 113 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHH
Confidence 999999999999999999998766
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.69 E-value=7.7e-06 Score=77.71 Aligned_cols=60 Identities=12% Similarity=-0.014 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhC
Q 046719 521 IYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCK----KGRVMEAEDMLPQITSS 583 (808)
Q Consensus 521 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 583 (808)
.+..|...+...+++++|+++|++..+.| +...+..|...|.. ..++..|...+......
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~ 67 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 67 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc
Confidence 34444444455555555555555555443 33344444444443 33455555555555443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1.9e-07 Score=83.70 Aligned_cols=145 Identities=8% Similarity=-0.044 Sum_probs=102.5
Q ss_pred HHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHH
Q 046719 635 IREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEV 712 (808)
Q Consensus 635 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A 712 (808)
...| ++.|.+.|.++ .+|+..+|..++.+|...|++++|++.|++.++ +.|+ ...|..++.++.+.|++++|
T Consensus 16 ~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 3444 67776666643 245667778888888889999999999999888 4554 45888888889999999999
Q ss_pred HHHHHHHHHCCC------------C--CC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 713 KELVNDMKVKGL------------I--PK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG 777 (808)
Q Consensus 713 ~~~~~~~~~~g~------------~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 777 (808)
+..|+++++... . .+ ..++..++.++.+.|++++|.+.++++++..+.+.. +
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~-------------~ 156 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH-------------S 156 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG-------------G
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcch-------------H
Confidence 988888765310 0 11 356778889999999999999999999987665422 2
Q ss_pred ChhHHHHHHHHHHHcCCCCCc
Q 046719 778 KLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 778 ~~~~A~~~~~~~~~~~~~~~~ 798 (808)
..+.|+..+.+.....|..+|
T Consensus 157 ~~~~Al~~~~~~~~~~~~~ip 177 (192)
T d1hh8a_ 157 KIDKAMECVWKQKLYEPVVIP 177 (192)
T ss_dssp HHHHHHHHHHTTCCCCCCCCC
T ss_pred HHHHHHHHHHhhhhCCccccc
Confidence 334555555444444444444
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.64 E-value=1.9e-05 Score=74.81 Aligned_cols=225 Identities=13% Similarity=-0.017 Sum_probs=166.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCcCHHhHH
Q 046719 553 TLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSS----LGSSQKCLELYENMKKLGIKPSLRTYH 628 (808)
Q Consensus 553 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~ 628 (808)
|+..+..|...+...+++++|++.|++..+.| +...+..|...|.. ..+...|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 45567778888889999999999999999876 66677777777765 668999999999988765 233333
Q ss_pred HHHHHHHH----cC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046719 629 PLLSGCIR----EG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYA----EHGDVQKALVLHSEMVDQGIRPDKMTYNSL 699 (808)
Q Consensus 629 ~l~~~~~~----~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l 699 (808)
.+...+.. .. .+.|...++...+.|. +.. ...+...+. .......|...+.+..+.+ +...+..|
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~-~~a--~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY-AEG--CASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HHH--HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh-hhH--HHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhh
Confidence 33333332 23 8889999999888762 222 222322332 3457888888888887743 66677788
Q ss_pred HHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 700 IFGHLR----EGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCN----LKDFGGAYIWYREMFENGFIPSFCIYNELTN 771 (808)
Q Consensus 700 ~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 771 (808)
+..+.. ..+...+..+++...+.| +......++..+.. ..++++|+.+|+++.+.| ++..+..|+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 888875 456778888888887754 66777777777765 568999999999999886 5678888999
Q ss_pred HHHh----cCChhHHHHHHHHHHHcCCC
Q 046719 772 GLKQ----EGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 772 ~l~~----~g~~~~A~~~~~~~~~~~~~ 795 (808)
+|.. ..+.++|.+++++..+.+..
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 8875 34899999999999998854
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.64 E-value=9.9e-08 Score=76.78 Aligned_cols=92 Identities=12% Similarity=-0.039 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLK 774 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 774 (808)
+..++..+.+.|++++|+..++++++ ..| +...|..++.++.+.|++++|+..++++++..|. +..++..++.+|.
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~ 95 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHH
Confidence 34567788888999999999998887 455 5778888888888899999999999998888777 7888888999999
Q ss_pred hcCChhHHHHHHHHHH
Q 046719 775 QEGKLKEAQILCSEIS 790 (808)
Q Consensus 775 ~~g~~~~A~~~~~~~~ 790 (808)
..|++++|++.+++.+
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHh
Confidence 9999999998888764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=5.6e-08 Score=79.20 Aligned_cols=97 Identities=18% Similarity=0.145 Sum_probs=47.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 046719 663 ALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGK---LSEVKELVNDMKVKGLIPK-ADTYNILVKGY 738 (808)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 738 (808)
.+++.+...+++++|.+.|++.++.+ +.+..++..+++++.+.++ +++|+.++++++..+..|+ ..+|..++.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 34445555555555555555555521 2233455555555554332 2345555555544221111 12445555555
Q ss_pred HccCChhHHHHHHHHHHHCCCC
Q 046719 739 CNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 739 ~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
.+.|++++|+++|+++++..|.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~ 104 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQ 104 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhhHHHHHHHHHHHHhCcC
Confidence 5555555555555555555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.63 E-value=5.2e-08 Score=88.88 Aligned_cols=97 Identities=11% Similarity=0.042 Sum_probs=80.5
Q ss_pred cCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 046719 622 PSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-KMTYNSL 699 (808)
Q Consensus 622 p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l 699 (808)
|+...+......+.+.| +++|.+.|+++++.. +.+...|+.++.+|.+.|++++|+..|+++++ +.|+ ..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHH
Confidence 66677777788888888 999999998888864 55678888888889999999999999999887 5664 4488889
Q ss_pred HHHHHhcCCHhHHHHHHHHHHH
Q 046719 700 IFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 700 ~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
+.+|...|++++|+..++++++
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988876
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.61 E-value=4.1e-07 Score=88.09 Aligned_cols=132 Identities=10% Similarity=-0.071 Sum_probs=76.1
Q ss_pred HHHHHHHHHH-ccCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC------
Q 046719 660 VYNALIHCYA-EHGDVQKALVLHSEMVDQ----GIRPDK-MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK------ 727 (808)
Q Consensus 660 ~~~~l~~~~~-~~g~~~~A~~~~~~~~~~----g~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~------ 727 (808)
.+..++..|. ..|++++|++.++++.+. +.++.. .++..++..+...|++++|+..++++........
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 4445555553 357788888877776542 111211 2566777888888888888888888765321111
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHh--cCChhHHHHHHHHHHH
Q 046719 728 ADTYNILVKGYCNLKDFGGAYIWYREMFENGFI-PS---FCIYNELTNGLKQ--EGKLKEAQILCSEISI 791 (808)
Q Consensus 728 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~---~~~~~~l~~~l~~--~g~~~~A~~~~~~~~~ 791 (808)
...+...+.++...|+++.|...++++.+..+. ++ ......++.++.. .+++++|++.|+++.+
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 122345555666778888888888877765432 11 2233445555444 3457777777766544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=6.7e-07 Score=78.17 Aligned_cols=120 Identities=13% Similarity=0.039 Sum_probs=93.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC-------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGI-RPD-------------KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLI 725 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~pd-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 725 (808)
.+...+..+.+.|++++|+..|.+.++.-- .+. ..+|+.++.+|.+.|++++|+..++++++ +.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~--~~ 92 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE--LD 92 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh--cc
Confidence 344556677888888888888888876310 000 13577788999999999999999999998 55
Q ss_pred C-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 046719 726 P-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEA 782 (808)
Q Consensus 726 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A 782 (808)
| +...|..++.++...|++++|+..|+++++.+|. +..+...+..+..+.++..+.
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 6 6788999999999999999999999999998877 888888887776665544443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=1.7e-07 Score=76.23 Aligned_cols=101 Identities=10% Similarity=0.002 Sum_probs=83.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChhHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 046719 697 NSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLK---DFGGAYIWYREMFENGFIPS-FCIYNELTNG 772 (808)
Q Consensus 697 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 772 (808)
..++..+...+++++|.+.|++++..+ +.++.++..++.++.+.+ ++++|+.+++++++.++.|+ ..++..|+.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 467788888899999999999998842 336788889999998755 45579999999988766654 3578899999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 773 LKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 773 l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
|.+.|++++|++.++++++..|++..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~ 107 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQ 107 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHH
Confidence 99999999999999999999998876
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=6.4e-07 Score=78.31 Aligned_cols=103 Identities=9% Similarity=-0.124 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC-------------HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGL-IPK-------------ADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
.+...+..+.+.|++++|+..|+++++.-. .+. ..+|..++.+|.+.|++++|+..++++++.+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~ 94 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 94 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc
Confidence 566778899999999999999999876311 111 245667889999999999999999999999877
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 761 PSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 761 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
++.++..++.+|...|++++|+..++++++.+|++..
T Consensus 95 -~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~ 131 (170)
T d1p5qa1 95 -NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 131 (170)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred -chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 8999999999999999999999999999999998766
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.47 E-value=8.5e-07 Score=75.93 Aligned_cols=69 Identities=14% Similarity=-0.003 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.++..++.+|.+.|++++|++.++++++.+|. +..+|..++.++...|++++|+..++++++.+|++..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 136 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 35566777888888888888888888887766 7788888888888888888888888888888877665
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.45 E-value=2.5e-06 Score=82.29 Aligned_cols=194 Identities=10% Similarity=0.019 Sum_probs=122.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCC-cCHHhHHHH
Q 046719 561 INGLCKKGRVMEAEDMLPQITSS----GLNPD-VITYNSLISGYSSLGSSQKCLELYENMKKL----GIK-PSLRTYHPL 630 (808)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~l 630 (808)
...|...|++++|.+.|.++.+. +-.++ ..+|..+..+|.+.|++++|++.+++..+. +.. ....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 34566677777777777766541 11111 246677777777778888877777766542 110 112334444
Q ss_pred HHHHHH-cC-HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-----H-HHHH
Q 046719 631 LSGCIR-EG-IVAVEKLFNEMLQI----NLVP-DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-----K-MTYN 697 (808)
Q Consensus 631 ~~~~~~-~~-~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-----~-~~~~ 697 (808)
...+.. .| +++|.+.+++..+. +.++ -..++..++..+...|++++|++.|+++........ . ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 555544 46 88888888776542 1111 134677889999999999999999999987421111 1 1244
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHc--cCChhHHHHHHHHHHH
Q 046719 698 SLIFGHLREGKLSEVKELVNDMKVKGLIPK------ADTYNILVKGYCN--LKDFGGAYIWYREMFE 756 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~------~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~ 756 (808)
..+..+...|+++.|...+++..+ +.|+ ......++.++.. .+.+++|+..|+++.+
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~--~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH--hCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 566677889999999999999887 4442 2234556666654 3458889888877653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.39 E-value=7.9e-07 Score=71.32 Aligned_cols=90 Identities=13% Similarity=0.091 Sum_probs=78.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 046719 662 NALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYC 739 (808)
Q Consensus 662 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~ 739 (808)
..++..+.+.|++++|+..|+++++. .| +...|..++.++.+.|++++|+..++++++ +.| +...|..++.+|.
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHH
Confidence 34566788899999999999999984 56 456899999999999999999999999988 556 5888999999999
Q ss_pred ccCChhHHHHHHHHHH
Q 046719 740 NLKDFGGAYIWYREMF 755 (808)
Q Consensus 740 ~~g~~~~A~~~~~~~~ 755 (808)
..|++++|++.+++.+
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHh
Confidence 9999999999999864
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.38 E-value=1.9e-06 Score=73.61 Aligned_cols=111 Identities=10% Similarity=-0.059 Sum_probs=88.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCC----CCC-----------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 046719 661 YNALIHCYAEHGDVQKALVLHSEMVDQGI----RPD-----------KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLI 725 (808)
Q Consensus 661 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~----~pd-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 725 (808)
+..-+..+.+.|++++|+..|.++++.-. .++ ..+|..++.+|.+.|++++|++.++++++ +.
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~--~~ 97 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK--ID 97 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc--cc
Confidence 44455667788888888888888776310 011 23577899999999999999999999998 45
Q ss_pred C-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 726 P-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLK 774 (808)
Q Consensus 726 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 774 (808)
| +..+|..++.++...|++++|+..|+++++.+|. +..+...+..+..
T Consensus 98 p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~ 146 (153)
T d2fbna1 98 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVN 146 (153)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 6 6889999999999999999999999999999877 7777766665543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=9.7e-07 Score=72.83 Aligned_cols=93 Identities=14% Similarity=0.168 Sum_probs=58.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--------HHHH
Q 046719 661 YNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK--------ADTY 731 (808)
Q Consensus 661 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--------~~~~ 731 (808)
+..++..+...|++++|+..|++.++. .| +...+..++.+|.+.|++++|++.++++++ +.|+ ..+|
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~~~~~~~~~~~a~~~ 82 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIAKAY 82 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence 445566666777777777777777663 33 344666677777777777777777777655 2221 1345
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 732 NILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 732 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
..++..+...+++++|+.+|++.+..
T Consensus 83 ~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 55666666666777777777666654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.35 E-value=3.5e-06 Score=73.38 Aligned_cols=130 Identities=9% Similarity=0.007 Sum_probs=98.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCC-----------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQ---GIRPD-----------KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLI 725 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~pd-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 725 (808)
.+...+..+.+.|++++|+..|++.+.. ....+ ..+|..++.+|.+.|++++|+..++++++ +.
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~--l~ 94 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG--LD 94 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh--cc
Confidence 3445667788888888888888887742 01111 12466788899999999999999999988 44
Q ss_pred C-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHHHc
Q 046719 726 P-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLK-EAQILCSEISIV 792 (808)
Q Consensus 726 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~-~A~~~~~~~~~~ 792 (808)
| +...|..++.++...|++++|+..|+++++.+|. +..+...+..+....+..+ ...+.+.+|.++
T Consensus 95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~~ 162 (168)
T d1kt1a1 95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQKKAKEHNERDRRTYANMFKK 162 (168)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 5 6788999999999999999999999999998876 7888888877765555443 455666666543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.32 E-value=3.1e-06 Score=73.92 Aligned_cols=112 Identities=11% Similarity=0.064 Sum_probs=72.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHC--------------CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-
Q 046719 663 ALIHCYAEHGDVQKALVLHSEMVDQ--------------GIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP- 726 (808)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~~~~~--------------g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p- 726 (808)
.....+...|++++|++.|.++++. .+.| +...|..++.++.+.|++++|+..++++++ +.|
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~--~~p~ 109 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPS 109 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh--hhhh
Confidence 3455566777777777777766531 0122 222566677777777777777777777776 444
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 727 KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG 777 (808)
Q Consensus 727 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 777 (808)
+...|..++.++...|++++|+..|+++++..|. +..+...+..+..+..
T Consensus 110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 110 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIK 159 (169)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH
Confidence 4666777777777777777777777777777665 6666666655554433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=1.8e-07 Score=98.18 Aligned_cols=225 Identities=9% Similarity=0.025 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHH
Q 046719 537 DAFKFFDEMVKREMGPT-LVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDV-ITYNSLISGYSSLGSSQKCLELYEN 614 (808)
Q Consensus 537 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 614 (808)
+|.+.|++..+. .|+ ...+..+..++...|++++| +++++.. .|+. ..++.. ...-...+..+++.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e--~~Lw~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVE--QDLWNHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHH--HHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHH--HHHHHHHHHHHHHHHHH
Confidence 677888888764 233 44566677777777777766 6666543 2321 111111 11111224556777777
Q ss_pred HHHCCCCcCHHhHHHHHHHHH--HcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 046719 615 MKKLGIKPSLRTYHPLLSGCI--REG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP 691 (808)
Q Consensus 615 ~~~~~~~p~~~~~~~l~~~~~--~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 691 (808)
..+....++..........+. ..+ ++.+...+.+..+.. +++...+..+...+.+.|+.++|...+++.... .|
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~ 151 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC 151 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH--HH
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH
Confidence 665443344332222222221 222 455555554444332 334556677777888888888888888777652 12
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELT 770 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 770 (808)
..++..++..+...|++++|..+++++.+ +.|+ ...|+.|+..+...|+..+|+..|.+++...+ |-+.++..|.
T Consensus 152 -~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~ 227 (497)
T d1ya0a1 152 -QHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQ 227 (497)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCHHHHHHHH
Confidence 23677788888888888888888888887 5564 57788888888888888888888888887654 3777788887
Q ss_pred HHHHhcC
Q 046719 771 NGLKQEG 777 (808)
Q Consensus 771 ~~l~~~g 777 (808)
..+.+..
T Consensus 228 ~~~~~~~ 234 (497)
T d1ya0a1 228 KALSKAL 234 (497)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 7765544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=8.7e-06 Score=66.87 Aligned_cols=99 Identities=14% Similarity=0.080 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC------HHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPS------FCIYN 767 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~ 767 (808)
.+..++..+...|++++|+..|+++++ +.| +...+..++.+|.+.|++++|+..++++++..+... ..+|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456788999999999999999999988 445 578888999999999999999999999987654311 24677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 768 ELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 768 ~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
.++..+...+++++|+.++++.+...+.
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 8889999999999999999999876543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.18 E-value=9.8e-06 Score=70.41 Aligned_cols=104 Identities=8% Similarity=-0.088 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHC---CCCCC-----------HHHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 694 MTYNSLIFGHLREGKLSEVKELVNDMKVK---GLIPK-----------ADTYNILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 694 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
..+...+..+.+.|++++|+..|++++.. ....+ ..+|..++.+|.+.|++++|+..++++++.+|
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 34667888999999999999999997641 11111 13456688899999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 760 IPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 760 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
. +..++..++.++...|++++|+..++++++..|++..
T Consensus 96 ~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~ 133 (168)
T d1kt1a1 96 A-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133 (168)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred c-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 7 8999999999999999999999999999999998765
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=1.4e-06 Score=91.35 Aligned_cols=267 Identities=10% Similarity=-0.014 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHhCCCCcc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHH
Q 046719 501 LEAEIVLKDMENRGVLPN-AQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTL-VTFNALINGLCKKGRVMEAEDMLP 578 (808)
Q Consensus 501 ~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 578 (808)
-+|.+.|++..+. .|+ ...+..+...+...|++++| |++++..+ |+. ..++.. ..+. ...+..+.+.++
T Consensus 3 ~eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e-~~Lw-~~~y~~~ie~~r 73 (497)
T d1ya0a1 3 LQSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVE-QDLW-NHAFKNQITTLQ 73 (497)
T ss_dssp HHHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHH-HHHH-HHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHH-HHHH-HHHHHHHHHHHH
Confidence 4788999998774 344 44677777888888888876 67776542 221 111111 1111 122556777777
Q ss_pred HHHhCCCCCCHHHHHHHHH--HHHcCCCHHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCC
Q 046719 579 QITSSGLNPDVITYNSLIS--GYSSLGSSQKCLELYENMKKLGIKP-SLRTYHPLLSGCIREG-IVAVEKLFNEMLQINL 654 (808)
Q Consensus 579 ~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~ 654 (808)
...+....++..-...... .+...+.++.++..+..... +.| +...+..+...+.+.| .++|...+.+.....
T Consensus 74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~- 150 (497)
T d1ya0a1 74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI- 150 (497)
T ss_dssp HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHHH-
T ss_pred HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence 7776543444332222211 22234555555555554443 333 4555666666677777 888888887766522
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHH
Q 046719 655 VPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDK-MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNI 733 (808)
Q Consensus 655 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 733 (808)
+ ...+..+++.+...|++++|+..|+++.+ +.|+. ..|+.|+..+...|+..+|+..|.+.+... .|-+.++..
T Consensus 151 -~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~n 225 (497)
T d1ya0a1 151 -C-QHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTN 225 (497)
T ss_dssp -H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHH
T ss_pred -H-HHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHH
Confidence 2 35677889999999999999999999999 56655 599999999999999999999999998742 456788888
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046719 734 LVKGYCNLKDFGGAYIWYREMFENGFIP-SFCIYNELTNGLKQEGKLKEAQILCSEIS 790 (808)
Q Consensus 734 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 790 (808)
|...+.+..+..++.+. ....+ -...+..+...+......++...+.+++.
T Consensus 226 L~~~~~~~~~~~~~~~~------~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~ 277 (497)
T d1ya0a1 226 LQKALSKALESRDEVKT------KWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLE 277 (497)
T ss_dssp HHHHHHHHTTSCCCCCS------SCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhcc------ccccchHHHHHHHHHHHHHhCCchhhHHHHHHHHH
Confidence 88887665443322110 00000 12244555666777777777766665554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.12 E-value=0.003 Score=60.25 Aligned_cols=285 Identities=14% Similarity=0.102 Sum_probs=159.3
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcC
Q 046719 104 ILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIG 183 (808)
Q Consensus 104 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 183 (808)
.+...|-+.|.++.|..++..+.. |.-++..+.+.+++..|..++.+.. +..+|..+...|.+..
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~ 83 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGK 83 (336)
T ss_dssp ----------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCc
Confidence 356668899999999999976642 6788899999999999999887662 6779999999998877
Q ss_pred ChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 046719 184 DLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRE 263 (808)
Q Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 263 (808)
....| .+.......+......++..|-..|.+++...+|+...... .++...++.++..|++.+ .++..+.+.
T Consensus 84 e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~kl~e~l~ 156 (336)
T d1b89a_ 84 EFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLE 156 (336)
T ss_dssp CHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred HHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHHHHHHHH
Confidence 66543 22222233455566788999999999999999999876542 457778899999998864 344444443
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcC
Q 046719 264 RMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRIN 343 (808)
Q Consensus 264 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 343 (808)
... .. .-...++..|-+.+-++ -++-.|.+.|+++.|..+.=. ..++
T Consensus 157 ~~s---~~---y~~~k~~~~c~~~~l~~----------------------elv~Ly~~~~~~~~A~~~~i~-----~~~~ 203 (336)
T d1b89a_ 157 LFW---SR---VNIPKVLRAAEQAHLWA----------------------ELVFLYDKYEEYDNAIITMMN-----HPTD 203 (336)
T ss_dssp HHS---TT---SCHHHHHHHHHTTTCHH----------------------HHHHHHHHTTCHHHHHHHHHH-----STTT
T ss_pred hcc---cc---CCHHHHHHHHHHcCChH----------------------HHHHHHHhcCCHHHHHHHHHH-----cchh
Confidence 321 11 11122333333333333 344444455555554443322 1223
Q ss_pred hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 344 SYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDK 423 (808)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 423 (808)
.+-....+..+.+.++.+...++....++. ++...+.++......-+..+..+.++
T Consensus 204 ~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~----~p~~i~~lL~~v~~~~d~~r~V~~~~-------------------- 259 (336)
T d1b89a_ 204 AWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFS-------------------- 259 (336)
T ss_dssp TCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHH--------------------
T ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHc----CHHHHHHHHHHhccCCCHHHHHHHHH--------------------
Confidence 333344555566666666555555555443 12233444444444444443333332
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 046719 424 FCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQIL 472 (808)
Q Consensus 424 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 472 (808)
+.+++.....+++.....+ +..+.+++...|...++++.-.+..
T Consensus 260 --k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 260 --KVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp --HTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --hcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 2333334444444443332 3345666666666666655433333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.11 E-value=0.0046 Score=58.96 Aligned_cols=292 Identities=15% Similarity=0.130 Sum_probs=180.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHH
Q 046719 132 LSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLI 211 (808)
Q Consensus 132 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 211 (808)
++..-...+++.|.+.|.++.|..+|..+. -|..++..+.+.+++..|.++..+.. +..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence 444445567888889999999999997553 37778888899999999988887652 566888888
Q ss_pred HHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChh
Q 046719 212 SGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRME 291 (808)
Q Consensus 212 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 291 (808)
..+.+.....-| .+.......++.....++..|-..|.+++...+++..... -..+...++.++..|++.+.
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-- 148 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-- 148 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH--
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh--
Confidence 888877665443 2223333446666678889999999999999999987643 34567788888888887542
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 046719 292 EAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEI 371 (808)
Q Consensus 292 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (808)
.++.+.+...+ +..-...++..|.+.+- |..++-.|.+.|+++.|..+.-.
T Consensus 149 --~kl~e~l~~~s---~~y~~~k~~~~c~~~~l----------------------~~elv~Ly~~~~~~~~A~~~~i~-- 199 (336)
T d1b89a_ 149 --QKMREHLELFW---SRVNIPKVLRAAEQAHL----------------------WAELVFLYDKYEEYDNAIITMMN-- 199 (336)
T ss_dssp --HHHHHHHHHHS---TTSCHHHHHHHHHTTTC----------------------HHHHHHHHHHTTCHHHHHHHHHH--
T ss_pred --HHHHHHHHhcc---ccCCHHHHHHHHHHcCC----------------------hHHHHHHHHhcCCHHHHHHHHHH--
Confidence 23333333321 12222334444444443 34466667778888888776533
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 046719 372 ENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKT 451 (808)
Q Consensus 372 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 451 (808)
. .++..-....+..+.+.++.+...++.....+. ++...+.++......-+..+..+.+
T Consensus 200 -~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~----~p~~i~~lL~~v~~~~d~~r~V~~~-------------- 258 (336)
T d1b89a_ 200 -H--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYF-------------- 258 (336)
T ss_dssp -S--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHH--------------
T ss_pred -c--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc----CHHHHHHHHHHhccCCCHHHHHHHH--------------
Confidence 2 234445567788888999988877777766653 2344456666555555554444433
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 046719 452 NNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVL 507 (808)
Q Consensus 452 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~ 507 (808)
-+.+++.-....++.....| +..+.+++...|...++++.-....
T Consensus 259 --------~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 259 --------SKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp --------HHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------HhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 34455555566666655544 4568888999999999876544433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.08 E-value=1.1e-05 Score=70.34 Aligned_cols=101 Identities=9% Similarity=-0.039 Sum_probs=85.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHC--------------CCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 046719 697 NSLIFGHLREGKLSEVKELVNDMKVK--------------GLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP 761 (808)
Q Consensus 697 ~~l~~~~~~~g~~~~A~~~~~~~~~~--------------g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 761 (808)
...+..+...|++++|++.+.++++. .+.| +...|..++.++.+.|++++|+..++++++..|.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~- 109 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS- 109 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-
Confidence 45667788899999999999887531 0122 2445778899999999999999999999999877
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 762 SFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 762 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
++..|..++.+|...|++++|+..++++++..|++..
T Consensus 110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~ 146 (169)
T d1ihga1 110 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 146 (169)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 8999999999999999999999999999999998754
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.01 E-value=4.6e-06 Score=70.25 Aligned_cols=113 Identities=12% Similarity=0.046 Sum_probs=69.0
Q ss_pred HccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc----------CCHhHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLRE----------GKLSEVKELVNDMKVKGLIP-KADTYNILVK 736 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 736 (808)
-+.+.+++|++.|++.++ +.| +..++..++.++... +.+++|+..++++++ +.| +..+|..++.
T Consensus 8 ~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHHH
Confidence 344556777777777766 344 334666666666532 334667777777776 455 4566777777
Q ss_pred HHHccC-----------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 737 GYCNLK-----------DFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 737 ~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
+|...| ++++|.+.|+++++..|. +...+..|... .+|..++.++.+++
T Consensus 84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~-~~~~~~~L~~~-------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD-NTHYLKSLEMT-------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-------HTHHHHHHHHHHSS
T ss_pred HHHHcccchhhHHHHHHhHHHhhhhhhcccccCCC-HHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 776554 367888888888887655 55555555444 34555555555543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.89 E-value=0.00013 Score=63.31 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHH-----HCCCCCCHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMF-----ENGFIPSFCI 765 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~ 765 (808)
.+..++..+...|++++|+..++++++ ..| +...|..++.+|.+.|++++|++.|+++. +.|+.|+...
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 466777888888888888888888877 455 56778888888888888888888888863 3577777654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.86 E-value=1.2e-05 Score=67.64 Aligned_cols=93 Identities=11% Similarity=-0.089 Sum_probs=78.5
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcc----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 703 HLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNL----------KDFGGAYIWYREMFENGFIPSFCIYNELTN 771 (808)
Q Consensus 703 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 771 (808)
|-+.+.+++|+..++++++ +.| ++..+..++.++... +++++|+..++++++.+|. +..+|+.++.
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHH
Confidence 4456679999999999998 556 578888899888754 4568899999999999888 8999999999
Q ss_pred HHHhcCC-----------hhHHHHHHHHHHHcCCCCCc
Q 046719 772 GLKQEGK-----------LKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 772 ~l~~~g~-----------~~~A~~~~~~~~~~~~~~~~ 798 (808)
+|...|+ +++|.+.++++++..|++..
T Consensus 84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~ 121 (145)
T d1zu2a1 84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 121 (145)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHH
Confidence 9988764 68999999999999998654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.84 E-value=1.3e-05 Score=74.82 Aligned_cols=126 Identities=15% Similarity=-0.002 Sum_probs=89.2
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChh
Q 046719 668 YAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFG 745 (808)
Q Consensus 668 ~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~ 745 (808)
..+.|++++|+..+++.++. .| |...+..++..++..|++++|...++.+.+ ..|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhccccH
Confidence 34678999999999999884 45 556888999999999999999999999888 5665 455555666655555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 046719 746 GAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAW 797 (808)
Q Consensus 746 ~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 797 (808)
++..........+..++...+...+..+...|+.++|...++++.+..|...
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 133 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 4433332222222223445555667778888999999999999988887653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.80 E-value=0.00012 Score=63.60 Aligned_cols=117 Identities=9% Similarity=-0.030 Sum_probs=83.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYC 739 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 739 (808)
............|++++|.+.|.+.++. .++...-. ...+.+ +...-..+.. .....+..++.++.
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~l~~------~~~~~w--~~~~r~~l~~----~~~~a~~~la~~~~ 78 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALRE--WRGPVLDD------LRDFQF--VEPFATALVE----DKVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSSTTGG------GTTSTT--HHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--Cccccccc------CcchHH--HHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3444556778889999999999999874 23221000 000111 1111111111 01345778899999
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046719 740 NLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 740 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
+.|++++|+..++++++..|. +...|..++.+|...|+..+|++.|++...
T Consensus 79 ~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999887 899999999999999999999999999844
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.78 E-value=3.7e-05 Score=65.65 Aligned_cols=99 Identities=15% Similarity=0.059 Sum_probs=69.3
Q ss_pred HHHHH--HHHHHhcCCHhHHHHHHHHHHHCC-CCCC----------HHHHHHHHHHHHccCChhHHHHHHHHHHHCC---
Q 046719 695 TYNSL--IFGHLREGKLSEVKELVNDMKVKG-LIPK----------ADTYNILVKGYCNLKDFGGAYIWYREMFENG--- 758 (808)
Q Consensus 695 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~g-~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 758 (808)
+|..+ +..+...|++++|+..|++.++.. -.|+ ...|..++.+|.+.|++++|...++++++..
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 455666677777777777766411 0111 3567788888889999999998888887531
Q ss_pred --CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 759 --FIPS-----FCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 759 --~~~~-----~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
..++ ...++.++.+|...|++++|+..+++++...
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~ 130 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 130 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111 2357788999999999999999999988764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=4.1e-05 Score=58.60 Aligned_cols=71 Identities=11% Similarity=-0.012 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCC---CC--CC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 046719 698 SLIFGHLREGKLSEVKELVNDMKVKG---LI--PK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNEL 769 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~~~~g---~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 769 (808)
.++..+.+.|++++|+..++++++.. .. ++ ..++..++.++.+.|++++|+..++++++..|. +..++..+
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a~~Nl 86 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRANGNL 86 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 45555555555555555555544320 00 01 234445555555555555555555555555444 44444433
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=9.9e-05 Score=56.35 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC-----CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 727 KADTYNILVKGYCNLKDFGGAYIWYREMFENGF-----IPS-FCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 727 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+...+..++..+.+.|++++|+.+++++++..+ .++ ..++..|+.++.+.|++++|+..++++++.+|++..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~ 81 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHH
Confidence 344556778888888888888888888876422 111 467788888888888888888888888888887755
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.62 E-value=0.00012 Score=62.39 Aligned_cols=98 Identities=12% Similarity=0.008 Sum_probs=74.8
Q ss_pred HHHHH--HHHHHccCCHHHHHHHHHHHHHCC-CCCC----------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC----
Q 046719 660 VYNAL--IHCYAEHGDVQKALVLHSEMVDQG-IRPD----------KMTYNSLIFGHLREGKLSEVKELVNDMKVK---- 722 (808)
Q Consensus 660 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~g-~~pd----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 722 (808)
.|..+ +..+...|++++|++.|++.++.. -.|+ ...|+.++.+|...|++++|...+++.++.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 556778899999999999998621 0111 347889999999999999999999998642
Q ss_pred -CCCCC-----HHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 723 -GLIPK-----ADTYNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 723 -g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
...++ ...+..++.+|...|++++|+..|+++++.
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222 235677899999999999999999999864
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.47 E-value=7.6e-05 Score=69.51 Aligned_cols=121 Identities=13% Similarity=0.055 Sum_probs=84.5
Q ss_pred HcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHH
Q 046719 636 REG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVK 713 (808)
Q Consensus 636 ~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~ 713 (808)
+.| +++|.+.+++.++.. +.|...+..++..|+..|++++|++.+++..+ +.|+.. .+..+...+...+..+++.
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhccccHHHH
Confidence 345 777778887777764 66788999999999999999999999999998 567654 6666666665544444433
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 714 ELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 714 ~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
.........+ .| +...+...+..+...|+.++|...++++.+..+.
T Consensus 85 ~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 85 QGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp TSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 2222111111 22 2344456677788899999999999999887554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.21 E-value=0.0043 Score=50.41 Aligned_cols=47 Identities=13% Similarity=-0.082 Sum_probs=21.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHc
Q 046719 743 DFGGAYIWYREMFENGFIPSFCIYNELTNGLKQ----EGKLKEAQILCSEISIV 792 (808)
Q Consensus 743 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~ 792 (808)
|.++|.++|+++.+.| ++.....|+.+|.. ..+.++|.+++++..+.
T Consensus 74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 3445555555554442 23334444444433 23445555555554443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.18 E-value=0.0014 Score=51.11 Aligned_cols=81 Identities=11% Similarity=-0.032 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHccC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-hh
Q 046719 725 IPKADTYNILVKGYCNLK---DFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT-NE 800 (808)
Q Consensus 725 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~-~~ 800 (808)
.+...+....++++.+.. +.++|+.+++++.+.++.-....++.|+.+|.+.|++++|+++++++++..|++.. .+
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 355667777777877654 45678888888887654423467788888888888888888888888888888776 33
Q ss_pred hhHhh
Q 046719 801 DQSAV 805 (808)
Q Consensus 801 ~~~~~ 805 (808)
....+
T Consensus 112 L~~~I 116 (124)
T d2pqrb1 112 LKSMV 116 (124)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.71 E-value=0.029 Score=45.17 Aligned_cols=111 Identities=12% Similarity=-0.051 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLR----EGKLSEVKE 714 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~----~g~~~~A~~ 714 (808)
.++|.++|++..+.| .+. .+..|. .....+.++|++.+++..+.| +......|+..|.. ..+.++|.+
T Consensus 9 ~~~A~~~~~kaa~~g-~~~--a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 9 LKKAIQYYVKACELN-EMF--GCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHTT-CTT--HHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHCC-Chh--hhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHH
Confidence 566777777777665 222 222222 233467889999999988876 55566677777664 456889999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCC
Q 046719 715 LVNDMKVKGLIPKADTYNILVKGYCN----LKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 715 ~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 760 (808)
+|++..+.| ++.....|+..|.. ..|.++|.++|+++.+.|..
T Consensus 81 ~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 81 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 999988865 45566667777765 45889999999999888754
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.37 E-value=0.079 Score=40.96 Aligned_cols=72 Identities=11% Similarity=0.145 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHH
Q 046719 691 PDKMTYNSLIFGHLREGK---LSEVKELVNDMKVKGLIP-K-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCI 765 (808)
Q Consensus 691 pd~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 765 (808)
|...+-...+|++.+... .++++.+++++.+. .| + ...+..|+-+|.+.|++++|.++++++++..|. +..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~-n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-NKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC-cHHH
Confidence 344466677788876644 56788888887763 34 3 356777888888888888888888888887665 4443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.80 E-value=0.58 Score=35.50 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=10.2
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046719 697 NSLIFGHLREGKLSEVKELVNDMKVK 722 (808)
Q Consensus 697 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 722 (808)
..++.+|.+-|...++-+++.++.++
T Consensus 124 lkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 124 VAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 33333444444444444443333333
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.36 E-value=1.2 Score=33.78 Aligned_cols=66 Identities=18% Similarity=0.104 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
..+...++.+.++|+-+.-.+++...++ +-++++.....++.+|.+-|...+|-.++.++-++|.+
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 3344445555566666666666666555 23456666666666666666666666666666665543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=89.58 E-value=10 Score=36.96 Aligned_cols=169 Identities=6% Similarity=-0.086 Sum_probs=93.4
Q ss_pred cCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 046719 601 SLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALV 679 (808)
Q Consensus 601 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 679 (808)
..+..+.+...+......+ .+.....-.+......+ +..+...+..+... ......-...+..++...|+.++|..
T Consensus 264 ~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~ 340 (450)
T d1qsaa1 264 GNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKE 340 (450)
T ss_dssp STTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHH
Confidence 3455566666666655533 22222222233333444 66677777665432 12233444567778888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC--CCHH----HHHHHHHHHHccCChhHHHHHHHH
Q 046719 680 LHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLI--PKAD----TYNILVKGYCNLKDFGGAYIWYRE 753 (808)
Q Consensus 680 ~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--p~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 753 (808)
.|..+.. .++ |..++.+-.-...+.- ....+. +... .-...+..+...|+..+|...+..
T Consensus 341 ~~~~~a~---~~~---fYG~LAa~~Lg~~~~~--------~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~ 406 (450)
T d1qsaa1 341 ILHQLMQ---QRG---FYPMVAAQRIGEEYEL--------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWAN 406 (450)
T ss_dssp HHHHHHT---SCS---HHHHHHHHHTTCCCCC--------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhc---CCC---hHHHHHHHHcCCCCCC--------CcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHH
Confidence 8888764 233 3222222111111100 000000 0100 012345667788999999888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 046719 754 MFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEI 789 (808)
Q Consensus 754 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 789 (808)
+... .+......++....+.|.++.|+....+.
T Consensus 407 l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 407 LVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 7753 25556677888888999999998777665
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=84.05 E-value=20 Score=34.67 Aligned_cols=320 Identities=8% Similarity=-0.025 Sum_probs=161.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 046719 420 LIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCK 499 (808)
Q Consensus 420 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 499 (808)
.+..+.+.++++.....+. ..+.+...-..+..+....|+.+.|...+..+=..|.. .
T Consensus 78 ~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-----------------~ 135 (450)
T d1qsaa1 78 FVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-----------------Q 135 (450)
T ss_dssp HHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-----------------C
T ss_pred HHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------C
Confidence 3445566666655443221 12334444455666677777777777766655433211 1
Q ss_pred HHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 046719 500 LLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQ 579 (808)
Q Consensus 500 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 579 (808)
.+....+|..+...|.. +...+..-+......|++..|..+...+-.. ........+..... ...+....
T Consensus 136 p~~c~~l~~~~~~~~~l-t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~---p~~~~~~~-- 205 (450)
T d1qsaa1 136 PNACDKLFSVWRASGKQ-DPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANN---PNTVLTFA-- 205 (450)
T ss_dssp CTHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHC---GGGHHHHH--
T ss_pred chHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhC---hHhHHHHH--
Confidence 12233445555554433 4444444555566667777777665533211 22333333333322 22221111
Q ss_pred HHhCCCCCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH----HHcC-HHHHHHHHHHHHHC
Q 046719 580 ITSSGLNPDVITYNSLISGYSS--LGSSQKCLELYENMKKLGIKPSLRTYHPLLSGC----IREG-IVAVEKLFNEMLQI 652 (808)
Q Consensus 580 ~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~~-~~~a~~~~~~~~~~ 652 (808)
... .++......+..++.+ ..+.+.|..++....... ..+......+.... ...+ .+.+...+......
T Consensus 206 -~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 281 (450)
T d1qsaa1 206 -RTT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR 281 (450)
T ss_dssp -HHS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT
T ss_pred -hcC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc
Confidence 111 1222222222333322 356777888887776532 22222222222222 2234 56666777666654
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 046719 653 NLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYN 732 (808)
Q Consensus 653 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 732 (808)
+ .+.......+......+++..+...+..|... ......-..-++.++...|+.++|..+|..+.. .++ |.
T Consensus 282 ~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~---fY 352 (450)
T d1qsaa1 282 S--QSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG---FY 352 (450)
T ss_dssp C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS---HH
T ss_pred c--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC---hH
Confidence 3 33333344444556678999998888877432 111223334678888999999999999998764 233 33
Q ss_pred HHHHHHHccCCh-hHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046719 733 ILVKGYCNLKDF-GGAYIWYREMFENGFIPSF----CIYNELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 733 ~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
..+.+- +.|.. .-... - ....+.. ..-...+..|...|+..+|...+..+..
T Consensus 353 G~LAa~-~Lg~~~~~~~~----~--~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~ 409 (450)
T d1qsaa1 353 PMVAAQ-RIGEEYELKID----K--APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (450)
T ss_dssp HHHHHH-HTTCCCCCCCC----C--CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHH-HcCCCCCCCcC----C--CCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHh
Confidence 333222 22321 10000 0 0000000 0112446778899999999999988864
|