Citrus Sinensis ID: 046733

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
KTKTLSAEENIAASSNQSSHLPQTSSFPKFIIKAVDDGSIIVSAPNSKTLGEALNFFSKYNKFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIYWF
Secondary Structure (PSIPRED)
ccccccHHHHHHHccccccccccccccccEEEEEEccccEEEEccccccHHHHHHHHHHcccccccccccHHHHHHHHHccccccEEEEEEccccEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHcccccccccccccccccEEEEEcccccEEEEccccccHHHHHHHHHHHcHHcccccccHHHHHHHHHHHccccEEEEEEccccEEEEEEEEEEc
Coil and Loop (DISEMBL)
KTKTLSAEENiaassnqsshlpqtssfpkFIIKAvddgsiivsapnsktlgEALNFFSKYnkfaygrdgdrnKIINRLsalndvdtviVGIGGLGKIVVWKNIYWF
Flexible Loop (DISEMBL)
ktktlsaeeniaassnqsshlpqtsSFPKFIIKAVDDGSIIVSAPNSKTLGEALNFFSKYNKFAYGRDGDRNKIINRlsalndvdtvivgigglgkivvWKNIYWF
Low Complexity Region (SEG)
KTKTLSAEENIAASSNQSSHLPQTSSFPKFIIKAVDDGSIIVSAPNSKTLGEALNFFSKYNKFAYGRDGDRNKIINRLSALNDVDTvivgigglgkivvWKNIYWF
Disordered region (IsUnstruct)
***************************PKFIIKAVDDGSIIVSAPNSKTLGEALNFFSKYNKFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIYW*
Disordered Region (DISOPRED)
**************************FPKFIIKAVDDGSIIVSAPNSKTLGEALNFFSKYNKFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIYWF
Disordered Region (DISEMBL)
***********************TSSFPKFIIKAVDDGSIIVSAPNSKTLGEALNFFSKYNKFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIYWF
Disordered Region (DISPRO)
************************SSFPKFIIKAVDDGSIIVSAPNSKTLGEALNFFSKYNKFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIYWF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
KTKTLSAEENIAASSNQSSHLPQTSSFPKFIIKAVDDGSIIVSAPNSKTLGEALNFFSKYNKFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIYWF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	106
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	0.003

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 67  RDGDRNKIINRLSALNDVDTV--IVGIGGLGKIVVWKNIY 104
           R+     +I +L  ++D   V  IVG+GG+GK  + K IY
Sbjct: 1   REDMIEALIEKLLEMSDNLGVVGIVGMGGVGKTTLAKQIY 40

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	98.7
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.68
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.66
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.88
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.7
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	97.67
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	97.55
CHL00095	821	clpC Clp protease ATP binding subunit	97.36
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.35
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.22
PRK00411	394	cdc6 cell division control protein 6; Reviewed	97.19
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.19
PRK10865	857	protein disaggregation chaperone; Provisional	97.14
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.03
PRK13342	413	recombination factor protein RarA; Reviewed	96.98
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	96.9
PHA02544	316	44 clamp loader, small subunit; Provisional	96.86
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.84
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	96.81
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	96.72
PRK06696	223	uridine kinase; Validated	96.71
PRK00440	319	rfc replication factor C small subunit; Reviewed	96.65
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	96.6
PRK12402	337	replication factor C small subunit 2; Reviewed	96.59
PTZ00202	550	tuzin; Provisional	96.56
PRK07667	193	uridine kinase; Provisional	96.48
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	96.46
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	96.43
PLN03025	319	replication factor C subunit; Provisional	96.36
PRK04195	482	replication factor C large subunit; Provisional	96.25
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.25
PRK13341	725	recombination factor protein RarA/unknown domain f	96.25
cd01128	249	rho_factor Transcription termination factor rho is	96.22
COG2256	436	MGS1 ATPase related to the helicase subunit of the	96.22
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	96.19
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	96.17
PRK03992	389	proteasome-activating nucleotidase; Provisional	96.16
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	96.1
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	96.1
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.08
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	96.08
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	95.98
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	95.97
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	95.87
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	95.84
PRK05564	313	DNA polymerase III subunit delta'; Validated	95.82
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	95.81
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	95.77
PRK13531	498	regulatory ATPase RavA; Provisional	95.76
PHA00729	226	NTP-binding motif containing protein	95.75
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	95.74
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	95.7
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	95.68
PRK15455	644	PrkA family serine protein kinase; Provisional	95.64
PRK06547	172	hypothetical protein; Provisional	95.64
PRK09376	416	rho transcription termination factor Rho; Provisio	95.61
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	95.55
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	95.55
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	95.51
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	95.5
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	95.47
PRK08903	227	DnaA regulatory inactivator Hda; Validated	95.4
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	95.4
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	95.38
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	95.37
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	95.31
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	95.28
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	95.26
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	95.26
PRK08084	235	DNA replication initiation factor; Provisional	95.18
PRK03846	198	adenylylsulfate kinase; Provisional	95.17
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	95.15
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	95.14
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	95.12
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	95.11
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	95.01
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	94.98
KOG2028	554	consensus ATPase related to the helicase subunit o	94.93
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	94.9
PRK06893	229	DNA replication initiation factor; Validated	94.89
PRK06620	214	hypothetical protein; Validated	94.87
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	94.86
COG0714	329	MoxR-like ATPases [General function prediction onl	94.86
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	94.85
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	94.83
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	94.71
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	94.68
CHL00181	287	cbbX CbbX; Provisional	94.67
PRK08727	233	hypothetical protein; Validated	94.63
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	94.57
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	94.54
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	94.53
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	94.53
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	94.52
PRK09112	351	DNA polymerase III subunit delta'; Validated	94.49
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	94.49
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	94.45
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	94.43
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	94.4
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	94.36
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	94.34
PRK09087	226	hypothetical protein; Validated	94.33
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	94.32
PRK07940	394	DNA polymerase III subunit delta'; Validated	94.29
PRK11608	326	pspF phage shock protein operon transcriptional ac	94.26
PRK07471	365	DNA polymerase III subunit delta'; Validated	94.25
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	94.21
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	94.19
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	94.1
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	94.09
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	94.09
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	94.07
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	94.05
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	94.04
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	94.03
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	94.03
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	94.02
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	94.01
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	93.99
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	93.99
cd03269	210	ABC_putative_ATPase This subfamily is involved in	93.98
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	93.98
PTZ00112	1164	origin recognition complex 1 protein; Provisional	93.97
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	93.97
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	93.96
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	93.95
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	93.95
PTZ00133	182	ADP-ribosylation factor; Provisional	93.93
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	93.91
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	93.9
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	93.88
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	93.88
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	93.88
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	93.85
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	93.83
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	93.82
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	93.82
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	93.81
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	93.79
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	93.79
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	93.79
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	93.79
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	93.78
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	93.77
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	93.75
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	93.74
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	93.73
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	93.68
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	93.68
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	93.66
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	93.64
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	93.64
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	93.63
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	93.63
PRK14738	206	gmk guanylate kinase; Provisional	93.62
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	93.61
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	93.6
smart00178	184	SAR Sar1p-like members of the Ras-family of small	93.6
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	93.59
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	93.56
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	93.56
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	93.56
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	93.55
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	93.53
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	93.52
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	93.5
COG3899	849	Predicted ATPase [General function prediction only	93.5
PRK10536	262	hypothetical protein; Provisional	93.47
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	93.43
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	93.43
PRK06526	254	transposase; Provisional	93.42
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	93.41
PLN02200	234	adenylate kinase family protein	93.41
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	93.39
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	93.39
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	93.38
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	93.38
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	93.37
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	93.37
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	93.35
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	93.34
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	93.34
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	93.32
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	93.32
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	93.28
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	93.27
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	93.26
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	93.24
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	93.22
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	93.21
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	93.2
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	93.2
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	93.2
PRK10908	222	cell division protein FtsE; Provisional	93.2
PRK09183	259	transposase/IS protein; Provisional	93.18
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	93.17
PRK05642	234	DNA replication initiation factor; Validated	93.12
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	93.12
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	93.1
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	93.09
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	93.09
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	93.08
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	93.07
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	93.06
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	93.06
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	93.05
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	93.05
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	93.05
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	93.05
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	93.04
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	93.03
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	93.03
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	93.02
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	93.01
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	93.0
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	92.98
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	92.98
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	92.97
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	92.95
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	92.95
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	92.95
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	92.94
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	92.94
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	92.93
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	92.92
cd03215	182	ABC_Carb_Monos_II This family represents domain II	92.91
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	92.9
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	92.87
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	92.87
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	92.87
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	92.86
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	92.86
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	92.84
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	92.83
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	92.81
cd03246	173	ABCC_Protease_Secretion This family represents the	92.81
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	92.8
PRK08099	399	bifunctional DNA-binding transcriptional repressor	92.8
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	92.79
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	92.79
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	92.78
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	92.78
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	92.77
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	92.76
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	92.75
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	92.74
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	92.74
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	92.73
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	92.73
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	92.73
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	92.73
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	92.72
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	92.72
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	92.72
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	92.71
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	92.7
CHL00176	638	ftsH cell division protein; Validated	92.68
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	92.68
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	92.67
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	92.66
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	92.65
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	92.65
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	92.65
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	92.64
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	92.64
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	92.63
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	92.61
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	92.61
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	92.61
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	92.61
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	92.59
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	92.59
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	92.57
TIGR00767	415	rho transcription termination factor Rho. Members	92.57
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	92.56
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	92.56
PRK05022	509	anaerobic nitric oxide reductase transcription reg	92.55
cd03234	226	ABCG_White The White subfamily represents ABC tran	92.55
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	92.54
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	92.5
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	92.5
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	92.49
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	92.49
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	92.49
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	92.49
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	92.46
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	92.46
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	92.46
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	92.46
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	92.45
PLN02796	347	D-glycerate 3-kinase	92.45
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	92.42
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	92.42
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	92.41
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	92.39
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	92.39
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	92.38
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	92.38
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	92.38
PLN02318	656	phosphoribulokinase/uridine kinase	92.37
cd03216	163	ABC_Carb_Monos_I This family represents the domain	92.37
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	92.36
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	92.35
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	92.34
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	92.32
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	92.32
cd01394	218	radB RadB. The archaeal protein radB shares simila	92.31
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	92.31
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	92.27
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	92.24
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	92.22
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	92.2
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	92.2
COG1123	539	ATPase components of various ABC-type transport sy	92.18
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	92.16
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	92.13
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	92.12
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	92.12
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	92.09
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	92.08
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	92.06
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	92.05
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	92.05
PF13245	76	AAA_19: Part of AAA domain	92.04
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	92.04
PRK05439	311	pantothenate kinase; Provisional	92.02
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	92.02
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	92.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	91.96
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	91.96
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	91.95
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	91.95
PRK09984	262	phosphonate/organophosphate ester transporter subu	91.94
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	91.94
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	91.91
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	91.9
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	91.89
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	91.89
PRK08116	268	hypothetical protein; Validated	91.88
PRK13546	264	teichoic acids export protein ATP-binding subunit;	91.87
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	91.85
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	91.84
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	91.83
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	91.81
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	91.81
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	91.8
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	91.79
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	91.75
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	91.71
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	91.7
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	91.7
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	91.69
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	91.68
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	91.66
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	91.65
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	91.63
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	91.63
smart00350	509	MCM minichromosome maintenance proteins.	91.63
PRK03695	248	vitamin B12-transporter ATPase; Provisional	91.61
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	91.61
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	91.58
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	91.57
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	91.57
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	91.56
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	91.56
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	91.56
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	91.55
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	91.54
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	91.51
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	91.5
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	91.5
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	91.48
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	91.47
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	91.46
PRK10865	857	protein disaggregation chaperone; Provisional	91.45
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	91.44
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	91.43
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	91.38
PRK12422	445	chromosomal replication initiation protein; Provis	91.38
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	91.35
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	91.34
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	91.34
PRK14088	440	dnaA chromosomal replication initiation protein; P	91.3
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	91.29
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	91.27
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	91.27
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	91.25
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	91.24
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	91.18
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	91.17
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	91.13
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	91.12
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	91.1
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	91.09
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	91.05
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	91.02
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	91.0
PLN02348	395	phosphoribulokinase	90.99
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	90.98
PRK10938	490	putative molybdenum transport ATP-binding protein	90.98
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	90.97
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	90.95
PRK13765	637	ATP-dependent protease Lon; Provisional	90.93
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	90.93
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	90.92
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	90.92
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	90.91
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	90.91
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	90.89
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	90.89
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	90.89
PRK04841	903	transcriptional regulator MalT; Provisional	90.87
PRK13851	344	type IV secretion system protein VirB11; Provision	90.86
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	90.85
PRK10416	318	signal recognition particle-docking protein FtsY;	90.83
PRK15064	530	ABC transporter ATP-binding protein; Provisional	90.81
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	90.76
CHL00095	821	clpC Clp protease ATP binding subunit	90.71
PRK00149	450	dnaA chromosomal replication initiation protein; R	90.7
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	90.69
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	90.68
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	90.68
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	90.61
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	90.61
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	90.61
cd03299	235	ABC_ModC_like Archeal protein closely related to M	90.61
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	90.6
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	90.58
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	90.57
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	90.55
PRK09435	332	membrane ATPase/protein kinase; Provisional	90.53
TIGR00064	272	ftsY signal recognition particle-docking protein F	90.52
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	90.5
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	90.49
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	90.49
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	90.46
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	90.43
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	90.42
PRK15064	530	ABC transporter ATP-binding protein; Provisional	90.41
PRK10261	623	glutathione transporter ATP-binding protein; Provi	90.38
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	90.38
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	90.36
PRK08533	230	flagellar accessory protein FlaH; Reviewed	90.35
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	90.32
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	90.31
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	90.28
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	90.27
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	90.26
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	90.26
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	90.21
PLN02165	334	adenylate isopentenyltransferase	90.2
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	90.19
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	90.17
PF13555	62	AAA_29: P-loop containing region of AAA domain	90.14
PHA02244	383	ATPase-like protein	90.13
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	90.1
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	90.09
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	90.07
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	90.06
PRK07952	244	DNA replication protein DnaC; Validated	90.01
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	90.01
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	89.98
PRK10261	623	glutathione transporter ATP-binding protein; Provi	89.98
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	89.98
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	89.97
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	89.97
PRK15424	538	propionate catabolism operon regulatory protein Pr	89.96
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	89.95
PRK12377	248	putative replication protein; Provisional	89.95
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	89.93
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	89.93
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	89.91
PRK10522	547	multidrug transporter membrane component/ATP-bindi	89.9
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	89.9
PRK10938	490	putative molybdenum transport ATP-binding protein	89.89
COG2884	223	FtsE Predicted ATPase involved in cell division [C	89.89
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	89.89
PLN03118	211	Rab family protein; Provisional	89.89
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	89.77
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	89.76
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	89.72
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	89.66
PRK03003	472	GTP-binding protein Der; Reviewed	89.63
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	89.59
PLN02674	244	adenylate kinase	89.58
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	89.58
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	89.57
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	89.56
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	89.55
KOG1969	877	consensus DNA replication checkpoint protein CHL12	89.54
PLN00223	181	ADP-ribosylation factor; Provisional	89.53
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	89.52
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	89.52
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	89.49
COG1855	604	ATPase (PilT family) [General function prediction	89.47
COG0410	237	LivF ABC-type branched-chain amino acid transport	89.45
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	89.4
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	89.38
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	89.37
KOG0062	582	consensus ATPase component of ABC transporters wit	89.34

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=98.70  E-value=1.7e-08  Score=76.33  Aligned_cols=39  Identities=26%  Similarity=0.464  Sum_probs=32.3

Q ss_pred             cchhHHHHHHHHhcCCCC-Cc-ceEecCCCcHHHHHHhhhc
Q 046733           67 RDGDRNKIINRLSALNDV-DT-VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        67 rd~~~~~lv~~L~~~~~~-~~-~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ||.++++|.+.|...... .+ .|+||||+||||||..+|+
T Consensus         1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~   41 (287)
T PF00931_consen    1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVAR   41 (287)
T ss_dssp             -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccc
Confidence            678999999999875432 34 9999999999999999875

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PLN03210 Resistant to P

Probab=98.68  E-value=1.4e-08  Score=91.82  Aligned_cols=44  Identities=20%  Similarity=0.266  Sum_probs=36.6

Q ss_pred             CceeecchhHHHHHHHHhcCCC-CCc-ceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSALND-VDT-VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~-~~~-~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .++||++...++|..+|..... .++ +||||||+||||||+.+|+
T Consensus       184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~  229 (1153)
T PLN03210        184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS  229 (1153)
T ss_pred             ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH
Confidence            5799999999999988854332 244 9999999999999999985

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.66  E-value=1.7e-08  Score=90.11  Aligned_cols=54  Identities=26%  Similarity=0.288  Sum_probs=45.2

Q ss_pred             ccccccccccccCCCceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhhc
Q 046733           48 KTLGEALNFFSKYNKFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        48 ~~~~~t~s~~~e~~~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +..+++.+...+  .+ ||.+..++++.+.|+..+. .+ +|+||||+||||||+.||+
T Consensus       147 ~~~~e~~~~~~~--~~-VG~e~~~~kl~~~L~~d~~-~iv~i~GMGGvGKTTL~~qi~N  201 (889)
T KOG4658|consen  147 REKVETRPIQSE--SD-VGLETMLEKLWNRLMEDDV-GIVGIYGMGGVGKTTLARQIFN  201 (889)
T ss_pred             hhhcccCCCCcc--cc-ccHHHHHHHHHHHhccCCC-CEEEEECCCcccHHHHHHHHhc
Confidence            445666666666  55 9999999999999988666 45 9999999999999999986

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.88  E-value=7.6e-06  Score=57.56  Aligned_cols=42  Identities=19%  Similarity=0.336  Sum_probs=28.4

Q ss_pred             eeecchhHHHHHHHHhcCC--CCCc-ceEecCCCcHHHHHHhhhc
Q 046733           64 AYGRDGDRNKIINRLSALN--DVDT-VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        64 vvGrd~~~~~lv~~L~~~~--~~~~-~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ++||+++.+.+...|....  ..+. -|+|..|+|||+|.+.+++
T Consensus         2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~   46 (185)
T PF13191_consen    2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD   46 (185)
T ss_dssp             -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999884221  2233 8889999999999997653

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.70  E-value=4.8e-05  Score=49.82  Aligned_cols=40  Identities=18%  Similarity=0.219  Sum_probs=30.0

Q ss_pred             ecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhhc
Q 046733           66 GRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        66 Grd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      |++...+.+...+.......+-|+|..|+|||||++.++.
T Consensus         2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~   41 (151)
T cd00009           2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIAN   41 (151)
T ss_pred             chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            6677777777776543233348999999999999998864

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=97.67  E-value=3.1e-05  Score=55.63  Aligned_cols=41  Identities=22%  Similarity=0.353  Sum_probs=30.6

Q ss_pred             eeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           64 AYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        64 vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+||+.+.++|.+++.......+.|+|..|+|||+|.+.+.
T Consensus         1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~   41 (234)
T PF01637_consen    1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFI   41 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHH
Confidence            47999999999998865433333888999999999999764

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=97.55  E-value=0.00011  Score=57.75  Aligned_cols=44  Identities=23%  Similarity=0.222  Sum_probs=35.1

Q ss_pred             CceeecchhHHHHHHHHhc---CCC-CCcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSA---LND-VDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~---~~~-~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ..++||+++.+.|...|..   ... ..+-|+|..|+|||++++.++.
T Consensus        15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~   62 (365)
T TIGR02928        15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMK   62 (365)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999998853   111 2348899999999999998863

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=97.36  E-value=0.00019  Score=63.60  Aligned_cols=42  Identities=19%  Similarity=0.429  Sum_probs=36.4

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      ..++||+++.++++..|......++-++|..|+|||++|+.+
T Consensus       179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~l  220 (821)
T CHL00095        179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGL  220 (821)
T ss_pred             CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHH
Confidence            468999999999999998765555689999999999999865

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.35  E-value=0.00018  Score=55.39  Aligned_cols=43  Identities=19%  Similarity=0.244  Sum_probs=33.0

Q ss_pred             CceeecchhHHHHHHHHhcC---CC-C-CcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSAL---ND-V-DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~---~~-~-~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .++||+++.++.|..++...   .. . .+-++|+.|+|||+||+.+.
T Consensus         4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia   51 (305)
T TIGR00635         4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIA   51 (305)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHH
Confidence            46899999999988877531   11 1 23788999999999999864

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.22  E-value=0.00035  Score=62.49  Aligned_cols=42  Identities=24%  Similarity=0.437  Sum_probs=36.2

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      ..++||+++.++++..|......+.-++|..|+||||||..+
T Consensus       187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~L  228 (852)
T TIGR03345       187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGL  228 (852)
T ss_pred             CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHH
Confidence            468999999999999997765555578999999999999865

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=97.19  E-value=0.00046  Score=54.86  Aligned_cols=44  Identities=18%  Similarity=0.247  Sum_probs=34.8

Q ss_pred             CceeecchhHHHHHHHHhcC---CC-CCcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSAL---ND-VDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~---~~-~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ..++||+++.+.|...|...   .. ..+-|+|..|+|||++++.++.
T Consensus        30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~   77 (394)
T PRK00411         30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFE   77 (394)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            57999999999998887432   11 1338899999999999998863

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.19  E-value=0.00041  Score=60.69  Aligned_cols=43  Identities=21%  Similarity=0.370  Sum_probs=36.2

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++||+++.++++..|......++-++|..|+|||+||+.+-
T Consensus       182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la  224 (731)
T TIGR02639       182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLA  224 (731)
T ss_pred             CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHH
Confidence            3699999999999988876655556888999999999998753

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.14  E-value=0.00047  Score=61.63  Aligned_cols=42  Identities=24%  Similarity=0.425  Sum_probs=36.1

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      ..++||+++.++++..|......+.-++|..|+|||+||..+
T Consensus       178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~l  219 (857)
T PRK10865        178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGL  219 (857)
T ss_pred             CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHH
Confidence            469999999999999998765555588899999999999864

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.03  E-value=0.00062  Score=53.70  Aligned_cols=43  Identities=19%  Similarity=0.255  Sum_probs=32.9

Q ss_pred             CceeecchhHHHHHHHHhcC---CC-C-CcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSAL---ND-V-DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~---~~-~-~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|+++.++.+..++...   .. . .+-|+|+.|+||||||+.+.
T Consensus        25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia   72 (328)
T PRK00080         25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIA   72 (328)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHH
Confidence            46999999999887776431   11 1 23788999999999999874

>PRK13342 recombination factor protein RarA; Reviewed

Probab=96.98  E-value=0.00049  Score=56.20  Aligned_cols=42  Identities=17%  Similarity=0.109  Sum_probs=29.3

Q ss_pred             ceeecchhHHH---HHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           63 FAYGRDGDRNK---IINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        63 ~vvGrd~~~~~---lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++||+++.+..   |..++.......+-++|..|+||||||+.+.
T Consensus        13 d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia   57 (413)
T PRK13342         13 EVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIA   57 (413)
T ss_pred             HhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHH
Confidence            57787765444   5555544333334788999999999999875

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=96.90  E-value=0.0011  Score=59.10  Aligned_cols=42  Identities=26%  Similarity=0.441  Sum_probs=35.4

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      ..++||+++.++++..|......+.-++|..|+|||+||..+
T Consensus       173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~l  214 (852)
T TIGR03346       173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGL  214 (852)
T ss_pred             CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHH
Confidence            359999999999999997755445578899999999999865

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=96.86  E-value=0.0014  Score=50.80  Aligned_cols=44  Identities=14%  Similarity=0.003  Sum_probs=34.7

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .+++|.++.++.+..++......+. -++|..|+||||+|+.++.
T Consensus        21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~   65 (316)
T PHA02544         21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCN   65 (316)
T ss_pred             HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHH
Confidence            4689999999999988865433333 5579999999999998753

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.84  E-value=0.0013  Score=54.17  Aligned_cols=49  Identities=16%  Similarity=0.299  Sum_probs=37.7

Q ss_pred             ccccccccCCCceeecchhHHHHHHHHhcCCC----C-Cc-ceEecCCCcHHHHHHhh
Q 046733           52 EALNFFSKYNKFAYGRDGDRNKIINRLSALND----V-DT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        52 ~t~s~~~e~~~~vvGrd~~~~~lv~~L~~~~~----~-~~-~IvGmGGiGKTTLA~~V  103 (106)
                      ....++.   .+++|.++.++++++++.....    . .+ .++|..|.||||||+.+
T Consensus        44 ~~y~~F~---~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~L   98 (361)
T smart00763       44 KRYRFFD---HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECL   98 (361)
T ss_pred             eeccccc---hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHH
Confidence            3444554   3799999999999999864221    1 33 89999999999999976

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=96.81  E-value=0.0013  Score=56.94  Aligned_cols=44  Identities=11%  Similarity=0.168  Sum_probs=34.7

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ++++|++.....+.+.+.......+-|+|..|+||||||+.++.
T Consensus       154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~  197 (615)
T TIGR02903       154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALE  197 (615)
T ss_pred             HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            46899999888888777543333458899999999999998864

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=96.72  E-value=0.0018  Score=57.45  Aligned_cols=43  Identities=21%  Similarity=0.370  Sum_probs=36.6

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++||+++.++++..|......++-++|..|+|||+||+.+.
T Consensus       186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la  228 (758)
T PRK11034        186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLA  228 (758)
T ss_pred             CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHH
Confidence            4699999999999998877554455889999999999999865

>PRK06696 uridine kinase; Validated

Probab=96.71  E-value=0.0019  Score=48.33  Aligned_cols=38  Identities=21%  Similarity=0.215  Sum_probs=26.9

Q ss_pred             cchhHHHHHHHHhcCCCC-C-c-ceEecCCCcHHHHHHhhh
Q 046733           67 RDGDRNKIINRLSALNDV-D-T-VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        67 rd~~~~~lv~~L~~~~~~-~-~-~IvGmGGiGKTTLA~~Vy  104 (106)
                      |++-++.|.+.+...... . + .|-|.+|.||||||+.+-
T Consensus         3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~   43 (223)
T PRK06696          3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELA   43 (223)
T ss_pred             HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHH
Confidence            445566777777543322 2 2 889999999999999764

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=96.65  E-value=0.0023  Score=48.98  Aligned_cols=43  Identities=14%  Similarity=0.116  Sum_probs=34.1

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|+++.++.+..++.......+-++|..|.||||+|+.+.
T Consensus        17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~   59 (319)
T PRK00440         17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALA   59 (319)
T ss_pred             HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence            4688999989888888865333234788999999999999864

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=96.60  E-value=0.0016  Score=50.83  Aligned_cols=42  Identities=19%  Similarity=0.207  Sum_probs=27.4

Q ss_pred             CceeecchhHHHHHHHHhc--CCCC---CcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSA--LNDV---DTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~--~~~~---~~~IvGmGGiGKTTLA~~V  103 (106)
                      .++||.++-++.+.-++..  .+..   .+-.+|.+|+||||||..+
T Consensus        24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~II   70 (233)
T PF05496_consen   24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARII   70 (233)
T ss_dssp             CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHH
T ss_pred             HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHH
Confidence            4699999877775444422  1111   2377899999999999975

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=96.59  E-value=0.0025  Score=49.22  Aligned_cols=43  Identities=16%  Similarity=0.200  Sum_probs=32.9

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|++..++.+..++.......+-++|..|+||||+|+.+.
T Consensus        15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~   57 (337)
T PRK12402         15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALA   57 (337)
T ss_pred             HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHH
Confidence            4688999988888887755432224788999999999998753

>PTZ00202 tuzin; Provisional

Probab=96.56  E-value=0.004  Score=53.52  Aligned_cols=43  Identities=19%  Similarity=0.305  Sum_probs=34.3

Q ss_pred             CceeecchhHHHHHHHHhcCCCC--Cc-ceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDV--DT-VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~--~~-~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++||+.+...|...|...+..  .+ .|.|+.|.|||||++.+.
T Consensus       262 ~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~  307 (550)
T PTZ00202        262 RQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAV  307 (550)
T ss_pred             cCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHH
Confidence            68999999999998887543322  34 889999999999988754

>PRK07667 uridine kinase; Provisional

Probab=96.48  E-value=0.0038  Score=45.92  Aligned_cols=35  Identities=23%  Similarity=0.270  Sum_probs=25.3

Q ss_pred             hHHHHHHHHhcCCCCCc--ceEecCCCcHHHHHHhhh
Q 046733           70 DRNKIINRLSALNDVDT--VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        70 ~~~~lv~~L~~~~~~~~--~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.+.|++.|......+.  .|-|..|.||||||+.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~   38 (193)
T PRK07667          2 STNELINIMKKHKENRFILGIDGLSRSGKTTFVANLK   38 (193)
T ss_pred             CHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            35667766654443333  888999999999999764

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=96.46  E-value=0.0029  Score=53.60  Aligned_cols=41  Identities=20%  Similarity=0.328  Sum_probs=33.4

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .++++.++..+.++..|....  ++-+.|++|+|||++|+.+.
T Consensus       175 ~d~~i~e~~le~l~~~L~~~~--~iil~GppGtGKT~lA~~la  215 (459)
T PRK11331        175 NDLFIPETTIETILKRLTIKK--NIILQGPPGVGKTFVARRLA  215 (459)
T ss_pred             hcccCCHHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHH
Confidence            468888889999998886432  34888999999999999874

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.43  E-value=0.0034  Score=50.54  Aligned_cols=42  Identities=21%  Similarity=0.220  Sum_probs=33.3

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .+++|.++-++.+.+.+...+.... -+.|..|+||||+|+.+
T Consensus        16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~l   58 (363)
T PRK14961         16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLL   58 (363)
T ss_pred             hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHH
Confidence            4699999989888887765443332 68899999999999875

>PLN03025 replication factor C subunit; Provisional

Probab=96.36  E-value=0.0042  Score=48.90  Aligned_cols=43  Identities=14%  Similarity=0.098  Sum_probs=31.9

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++-++.|..++.......+-++|..|+||||+|+.+-
T Consensus        13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la   55 (319)
T PLN03025         13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALA   55 (319)
T ss_pred             HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHH
Confidence            3688988877777766654333234788999999999999753

>PRK04195 replication factor C large subunit; Provisional

Probab=96.25  E-value=0.0035  Score=52.26  Aligned_cols=43  Identities=12%  Similarity=0.216  Sum_probs=34.2

Q ss_pred             CceeecchhHHHHHHHHhcCCC---CC-cceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALND---VD-TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~---~~-~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++.|.+|+..-..   .. +-|+|..|+||||+|+.+.
T Consensus        14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala   60 (482)
T PRK04195         14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALA   60 (482)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHH
Confidence            4699999999999999864221   22 3788999999999999874

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.25  E-value=0.0058  Score=44.74  Aligned_cols=37  Identities=14%  Similarity=-0.014  Sum_probs=24.4

Q ss_pred             hhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhhc
Q 046733           69 GDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        69 ~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ...+.+..++.......+-|+|..|+|||+||+.+++
T Consensus        24 ~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~   60 (226)
T TIGR03420        24 ELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACA   60 (226)
T ss_pred             HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            3455555554322222347889999999999998753

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=96.25  E-value=0.004  Score=55.09  Aligned_cols=43  Identities=19%  Similarity=0.097  Sum_probs=29.3

Q ss_pred             ceeecchhHH---HHHHHHhcCCCCCcceEecCCCcHHHHHHhhhc
Q 046733           63 FAYGRDGDRN---KIINRLSALNDVDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        63 ~vvGrd~~~~---~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +++|.+.-+.   .+...+.......+-++|..|+||||||+.+.+
T Consensus        29 d~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~   74 (725)
T PRK13341         29 EFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIAN   74 (725)
T ss_pred             HhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH
Confidence            5888886654   344444333222347889999999999998753

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=96.22  E-value=0.0025  Score=49.52  Aligned_cols=20  Identities=25%  Similarity=0.219  Sum_probs=18.5

Q ss_pred             cceEecCCCcHHHHHHhhhc
Q 046733           86 TVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +.|+|.+|+|||||++.+|+
T Consensus        19 ~~I~G~~G~GKTTLlr~I~n   38 (249)
T cd01128          19 GLIVAPPKAGKTTLLQSIAN   38 (249)
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            49999999999999999985

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=96.22  E-value=0.004  Score=52.37  Aligned_cols=39  Identities=18%  Similarity=0.210  Sum_probs=25.7

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      .+++|.+...+++++   .....+.-.||..|+||||||+.+
T Consensus        30 ~HLlg~~~~lrr~v~---~~~l~SmIl~GPPG~GKTTlA~li   68 (436)
T COG2256          30 EHLLGEGKPLRRAVE---AGHLHSMILWGPPGTGKTTLARLI   68 (436)
T ss_pred             HhhhCCCchHHHHHh---cCCCceeEEECCCCCCHHHHHHHH
Confidence            445555555555554   222223377899999999999976

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=96.19  E-value=0.0049  Score=49.37  Aligned_cols=44  Identities=16%  Similarity=0.160  Sum_probs=32.9

Q ss_pred             CceeecchhHHHHHHHHhcC--C-----------CCCcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSAL--N-----------DVDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~--~-----------~~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .++.|+++.++.|.+.+...  .           ...+-++|..|+|||+||+++.+
T Consensus       122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~  178 (364)
T TIGR01242       122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH  178 (364)
T ss_pred             HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            46889999999998876321  1           01137789999999999998863

Many proteins may score above the trusted cutoff because an internal

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=96.17  E-value=0.0057  Score=49.54  Aligned_cols=42  Identities=14%  Similarity=0.180  Sum_probs=33.7

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      ..+||.++-+..++-.+.+.....+-|.|..|.|||||++.+
T Consensus         4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~   45 (337)
T TIGR02030         4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRAL   45 (337)
T ss_pred             cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHH
Confidence            468999988888766666644445689999999999999986

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=96.16  E-value=0.0054  Score=50.02  Aligned_cols=44  Identities=14%  Similarity=0.139  Sum_probs=32.2

Q ss_pred             CceeecchhHHHHHHHHhc---CC----------CCCcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSA---LN----------DVDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~---~~----------~~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .++.|+++.+++|.+.+..   ..          ...+-++|..|.|||+||+++.+
T Consensus       131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~  187 (389)
T PRK03992        131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH  187 (389)
T ss_pred             HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence            3688999999998876532   10          01236789999999999998864

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=96.10  E-value=0.006  Score=54.66  Aligned_cols=41  Identities=29%  Similarity=0.428  Sum_probs=34.8

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKN  102 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~  102 (106)
                      .-|+||+++.++++..|++....+--.||-.|+|||+++.-
T Consensus       170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEG  210 (786)
T COG0542         170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEG  210 (786)
T ss_pred             CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHH
Confidence            35999999999999999887665547789999999998864

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.10  E-value=0.006  Score=51.41  Aligned_cols=42  Identities=26%  Similarity=0.286  Sum_probs=31.8

Q ss_pred             CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V  103 (106)
                      .++||.++-+..|...+...+-.. +-++|..|+||||+|+.+
T Consensus        14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~l   56 (472)
T PRK14962         14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARIL   56 (472)
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence            469999887777777665543322 257899999999999976

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.08  E-value=0.0036  Score=46.99  Aligned_cols=20  Identities=30%  Similarity=0.438  Sum_probs=17.6

Q ss_pred             cceEecCCCcHHHHHHhhhc
Q 046733           86 TVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +.|+|..|+|||||++.++.
T Consensus        46 ~~l~G~~G~GKTtl~~~l~~   65 (269)
T TIGR03015        46 ILITGEVGAGKTTLIRNLLK   65 (269)
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            38899999999999998763

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=96.08  E-value=0.004  Score=50.89  Aligned_cols=44  Identities=16%  Similarity=0.130  Sum_probs=35.8

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +.+||.++-+..|+..+.++.-..+-|.|--|.||||+|+.+|.
T Consensus        17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~   60 (350)
T CHL00081         17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVD   60 (350)
T ss_pred             HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHH
Confidence            57999998888887766665444457889999999999999875

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=95.98  E-value=0.0084  Score=46.82  Aligned_cols=42  Identities=14%  Similarity=0.152  Sum_probs=33.4

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .+++|.++.++.|.+++........ -++|..|+||||+|+.+
T Consensus        14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~l   56 (355)
T TIGR02397        14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIF   56 (355)
T ss_pred             hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence            4689999999999988865443333 67899999999999765

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=95.97  E-value=0.0061  Score=46.62  Aligned_cols=43  Identities=19%  Similarity=0.107  Sum_probs=28.0

Q ss_pred             CceeecchhHHHHHH---HHhc------CCC---C---CcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIIN---RLSA------LND---V---DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~---~L~~------~~~---~---~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++-++.|.+   ++..      ...   .   ++-++|..|+||||+|+.+.
T Consensus         6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia   63 (261)
T TIGR02881         6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILG   63 (261)
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHH
Confidence            358898877766643   3311      000   1   12578999999999999874

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=95.87  E-value=0.0056  Score=54.60  Aligned_cols=42  Identities=29%  Similarity=0.417  Sum_probs=33.4

Q ss_pred             CceeecchhHHHHHHHHhcCC---C--CCc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALN---D--VDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~---~--~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .+-.|.++-+++|++.|.-..   .  ..+ ..||.+|+|||.|++.|
T Consensus       323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSI  370 (782)
T COG0466         323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSI  370 (782)
T ss_pred             ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHH
Confidence            478899999999999984211   1  123 88899999999999976

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.84  E-value=0.0085  Score=51.56  Aligned_cols=43  Identities=16%  Similarity=0.236  Sum_probs=33.9

Q ss_pred             CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.+..++.|...+...+... +-++|..|+||||+|+.+.
T Consensus        16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lA   59 (546)
T PRK14957         16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLA   59 (546)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            469999999988888886544333 2578999999999998763

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=95.82  E-value=0.012  Score=46.17  Aligned_cols=43  Identities=28%  Similarity=0.383  Sum_probs=34.5

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.+.-++.+..++...+-... -++|..|+||||||+.+.
T Consensus         4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a   47 (313)
T PRK05564          4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIA   47 (313)
T ss_pred             hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHH
Confidence            4688998888999988866544444 788999999999998754

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=95.81  E-value=0.011  Score=44.28  Aligned_cols=18  Identities=28%  Similarity=0.243  Sum_probs=16.2

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|.|..|.|||||++.+.
T Consensus        37 gi~G~~GsGKTTl~~~L~   54 (229)
T PRK09270         37 GIAGPPGAGKSTLAEFLE   54 (229)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            899999999999999753

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.77  E-value=0.01  Score=50.48  Aligned_cols=42  Identities=17%  Similarity=0.213  Sum_probs=34.0

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .++||.+.-++.|.+++...+-... -.+|..|+||||+|+.+
T Consensus        16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~l   58 (509)
T PRK14958         16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRIL   58 (509)
T ss_pred             HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHH
Confidence            4699999999999998866544332 67899999999999864

>PRK13531 regulatory ATPase RavA; Provisional

Probab=95.76  E-value=0.0088  Score=51.20  Aligned_cols=41  Identities=15%  Similarity=0.160  Sum_probs=32.4

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++|+++.++.++.-+....  ++-|.|..|+|||+||+.+.
T Consensus        20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa   60 (498)
T PRK13531         20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLK   60 (498)
T ss_pred             hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHH
Confidence            578999988888877665432  34888999999999999764

>PHA00729 NTP-binding motif containing protein

Probab=95.75  E-value=0.0091  Score=46.27  Aligned_cols=31  Identities=29%  Similarity=0.328  Sum_probs=22.0

Q ss_pred             HHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733           73 KIINRLSALNDVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        73 ~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      ++++.+......++-|.|..|+||||||..+
T Consensus         7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aL   37 (226)
T PHA00729          7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKV   37 (226)
T ss_pred             HHHHHHhcCCeEEEEEECCCCCCHHHHHHHH
Confidence            3444444433334588999999999999986

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=95.74  E-value=0.011  Score=50.35  Aligned_cols=43  Identities=19%  Similarity=0.218  Sum_probs=34.4

Q ss_pred             ceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhhc
Q 046733           63 FAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        63 ~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +++|.+...+.+...+.......+-|+|..|+|||++|+.+++
T Consensus        66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~  108 (531)
T TIGR02902        66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLE  108 (531)
T ss_pred             HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            6999998888888776544333457889999999999999863

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.70  E-value=0.012  Score=48.09  Aligned_cols=42  Identities=17%  Similarity=0.131  Sum_probs=32.2

Q ss_pred             CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V  103 (106)
                      .+++|.+.-++.|..++...+... +-++|..|+||||+|..+
T Consensus        16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~   58 (397)
T PRK14955         16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVF   58 (397)
T ss_pred             hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHH
Confidence            468999888888888776544332 367899999999999864

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.68  E-value=0.01  Score=50.55  Aligned_cols=42  Identities=17%  Similarity=0.156  Sum_probs=33.9

Q ss_pred             CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V  103 (106)
                      .++||.+.-+..|..++...+... +-++|..|+||||+|+.+
T Consensus        18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriL   60 (484)
T PRK14956         18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARIL   60 (484)
T ss_pred             HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence            469999998888888887655333 378899999999999976

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=95.64  E-value=0.012  Score=51.74  Aligned_cols=42  Identities=17%  Similarity=0.241  Sum_probs=33.3

Q ss_pred             ceeecchhHHHHHHHHhcC----CCC-Cc-ceEecCCCcHHHHHHhhh
Q 046733           63 FAYGRDGDRNKIINRLSAL----NDV-DT-VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        63 ~vvGrd~~~~~lv~~L~~~----~~~-~~-~IvGmGGiGKTTLA~~Vy  104 (106)
                      +++|.++.+++|++.|...    ... .+ -++|..|.||||||+.+-
T Consensus        77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la  124 (644)
T PRK15455         77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLK  124 (644)
T ss_pred             cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHH
Confidence            5899999999999998321    111 34 888999999999999863

>PRK06547 hypothetical protein; Provisional

Probab=95.64  E-value=0.013  Score=42.94  Aligned_cols=17  Identities=29%  Similarity=0.409  Sum_probs=15.7

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|.|..|.||||||+.+
T Consensus        19 ~i~G~~GsGKTt~a~~l   35 (172)
T PRK06547         19 LIDGRSGSGKTTLAGAL   35 (172)
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            88899999999999976

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=95.61  E-value=0.0062  Score=51.11  Aligned_cols=19  Identities=37%  Similarity=0.359  Sum_probs=17.9

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      -|+|.+|+||||||+.||+
T Consensus       173 lIvgppGvGKTTLaK~Ian  191 (416)
T PRK09376        173 LIVAPPKAGKTVLLQNIAN  191 (416)
T ss_pred             EEeCCCCCChhHHHHHHHH
Confidence            8999999999999999985

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.55  E-value=0.014  Score=49.64  Aligned_cols=43  Identities=16%  Similarity=0.174  Sum_probs=33.1

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++-++.|.+++....-... -++|..|+||||+|+.+.
T Consensus        14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA   57 (504)
T PRK14963         14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIA   57 (504)
T ss_pred             HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3689999888888887765443233 678999999999998763

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.55  E-value=0.014  Score=51.73  Aligned_cols=42  Identities=14%  Similarity=0.190  Sum_probs=34.0

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .++||.+.-++.|.+++...+.... -+.|..|+||||+|+.+
T Consensus        15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriL   57 (702)
T PRK14960         15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARIL   57 (702)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence            4699999999999998876543333 67899999999999864

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=95.51  E-value=0.014  Score=50.90  Aligned_cols=42  Identities=19%  Similarity=0.236  Sum_probs=33.2

Q ss_pred             CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V  103 (106)
                      .+++|.+.-++.+.+.+...+... +-+.|..|+||||+|+.+
T Consensus        16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~l   58 (605)
T PRK05896         16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIF   58 (605)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHH
Confidence            469999998888888876544333 367899999999999875

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.50  E-value=0.013  Score=49.82  Aligned_cols=42  Identities=17%  Similarity=0.222  Sum_probs=33.5

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .+++|.+.-++.|.+++...+-... -+.|..|+||||+|+.+
T Consensus        16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~l   58 (527)
T PRK14969         16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARIL   58 (527)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHH
Confidence            4689999989988888866544332 68899999999999875

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=95.47  E-value=0.015  Score=47.20  Aligned_cols=42  Identities=12%  Similarity=0.152  Sum_probs=31.5

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      ..++|.++.++.+.-.+.......+-+.|..|.||||||+.+
T Consensus         8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~l   49 (334)
T PRK13407          8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRAL   49 (334)
T ss_pred             HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHH
Confidence            578999988887764444333334578899999999999975

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=95.40  E-value=0.027  Score=41.74  Aligned_cols=20  Identities=15%  Similarity=0.197  Sum_probs=17.5

Q ss_pred             cceEecCCCcHHHHHHhhhc
Q 046733           86 TVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +-|+|..|+|||+||+.+++
T Consensus        45 ~~l~G~~G~GKT~La~ai~~   64 (227)
T PRK08903         45 FYLWGEAGSGRSHLLQALVA   64 (227)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            37889999999999998763

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.40  E-value=0.016  Score=50.64  Aligned_cols=42  Identities=19%  Similarity=0.254  Sum_probs=33.5

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .++||.+.-++.|.+++...+.... -++|.-|+||||+|+.+
T Consensus        16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~l   58 (618)
T PRK14951         16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRIL   58 (618)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence            4689988888888888876554333 67899999999999875

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.38  E-value=0.016  Score=51.37  Aligned_cols=42  Identities=14%  Similarity=0.217  Sum_probs=34.2

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .++||.++-++.|.+.+...+-... -++|..|+||||+|+.+
T Consensus        16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriL   58 (700)
T PRK12323         16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRIL   58 (700)
T ss_pred             HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHH
Confidence            4699999999999988876554433 67899999999999875

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=95.37  E-value=0.012  Score=48.03  Aligned_cols=42  Identities=21%  Similarity=0.313  Sum_probs=29.8

Q ss_pred             CceeecchhHHHHHHHHhcC---CCC-C-cceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSAL---NDV-D-TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~---~~~-~-~~IvGmGGiGKTTLA~~V  103 (106)
                      .+.||.++-++.+-=.+...   ... + +-+.|..|+||||||..|
T Consensus        26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~II   72 (332)
T COG2255          26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHII   72 (332)
T ss_pred             HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHH
Confidence            46899888777765555322   111 2 378899999999999876

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=95.31  E-value=0.018  Score=51.24  Aligned_cols=42  Identities=17%  Similarity=0.193  Sum_probs=34.1

Q ss_pred             CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V  103 (106)
                      .++||.+.-++.|.+++...+... +-++|..|+||||+|+.+
T Consensus        16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriL   58 (709)
T PRK08691         16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARIL   58 (709)
T ss_pred             HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHH
Confidence            469999999999999887654332 377899999999999865

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=95.28  E-value=0.021  Score=41.62  Aligned_cols=42  Identities=17%  Similarity=0.226  Sum_probs=30.8

Q ss_pred             eeecchhHHHHHHHHhcCCC--CCcceEecCCCcHHHHHHhhhc
Q 046733           64 AYGRDGDRNKIINRLSALND--VDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        64 vvGrd~~~~~lv~~L~~~~~--~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +||......++++.+..-..  ..+-|+|-.|.||+.+|+.++.
T Consensus         1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~   44 (168)
T PF00158_consen    1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHN   44 (168)
T ss_dssp             SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred             CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH
Confidence            47888888888887754333  2348889999999999999985

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=95.26  E-value=0.021  Score=49.61  Aligned_cols=42  Identities=14%  Similarity=0.237  Sum_probs=34.0

Q ss_pred             CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V  103 (106)
                      .+++|.+..++.|.+.+...+-.. +-+.|.-|+||||+|+.+
T Consensus        24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~l   66 (598)
T PRK09111         24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARIL   66 (598)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHH
Confidence            469999999999998886654333 377899999999999875

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.26  E-value=0.022  Score=45.38  Aligned_cols=42  Identities=17%  Similarity=0.240  Sum_probs=33.3

Q ss_pred             CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V  103 (106)
                      .+++|.+..++.+.+.+....... +-++|..|+||||+|+.+
T Consensus        17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l   59 (367)
T PRK14970         17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARIL   59 (367)
T ss_pred             HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence            468999999998888886543332 368899999999999865

>PRK08084 DNA replication initiation factor; Provisional

Probab=95.18  E-value=0.03  Score=42.44  Aligned_cols=20  Identities=10%  Similarity=0.054  Sum_probs=17.4

Q ss_pred             cceEecCCCcHHHHHHhhhc
Q 046733           86 TVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +-|+|..|+|||+|++.+.+
T Consensus        48 l~l~Gp~G~GKThLl~a~~~   67 (235)
T PRK08084         48 IYLWSREGAGRSHLLHAACA   67 (235)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            38999999999999998653

>PRK03846 adenylylsulfate kinase; Provisional

Probab=95.17  E-value=0.013  Score=43.01  Aligned_cols=18  Identities=28%  Similarity=0.357  Sum_probs=16.3

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|+.|.||||||+.+-
T Consensus        28 ~i~G~~GsGKSTla~~l~   45 (198)
T PRK03846         28 WFTGLSGSGKSTVAGALE   45 (198)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            899999999999999763

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.15  E-value=0.021  Score=52.10  Aligned_cols=43  Identities=16%  Similarity=0.197  Sum_probs=34.2

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy  104 (106)
                      .++||.+.-++.|.+.+...+-... -++|..|+||||+|+.+.
T Consensus        16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLA   59 (944)
T PRK14949         16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFA   59 (944)
T ss_pred             HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            4699999999988888866543333 588999999999999764

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=95.14  E-value=0.021  Score=50.20  Aligned_cols=42  Identities=17%  Similarity=0.199  Sum_probs=33.4

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .++||.+.-++.|.+.+...+-... -++|.-|+||||+|+.+
T Consensus        16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~l   58 (647)
T PRK07994         16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLL   58 (647)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence            4699999988888888866544332 57899999999999875

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.12  E-value=0.022  Score=48.94  Aligned_cols=42  Identities=14%  Similarity=0.175  Sum_probs=33.0

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .+++|.+.-++.|.+++........ -++|..|+||||+|+.+
T Consensus        16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~l   58 (585)
T PRK14950         16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARIL   58 (585)
T ss_pred             HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHH
Confidence            4699999988888888765443222 57899999999999875

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.11  E-value=0.025  Score=48.24  Aligned_cols=42  Identities=24%  Similarity=0.229  Sum_probs=32.1

Q ss_pred             CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V  103 (106)
                      .++||.+.-++.|.+.+...+-.. +-+.|..|+||||+|+.+
T Consensus        13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~Aril   55 (491)
T PRK14964         13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARII   55 (491)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHH
Confidence            469999988888777775544332 367899999999999864

>cd04155 Arl3 Arl3 subfamily

Probab=95.01  E-value=0.027  Score=39.01  Aligned_cols=19  Identities=26%  Similarity=0.559  Sum_probs=17.1

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||.+.+.
T Consensus        17 v~i~G~~g~GKStLl~~l~   35 (173)
T cd04155          17 ILILGLDNAGKTTILKQLA   35 (173)
T ss_pred             EEEEccCCCCHHHHHHHHh
Confidence            4999999999999999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.98  E-value=0.025  Score=49.09  Aligned_cols=42  Identities=17%  Similarity=0.134  Sum_probs=33.6

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .++||.+.-++.|.+++...+-... -+.|.-|+||||+|+.+
T Consensus        13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~l   55 (584)
T PRK14952         13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARIL   55 (584)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence            4699999989999888876543332 57899999999999864

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=94.93  E-value=0.026  Score=47.90  Aligned_cols=17  Identities=29%  Similarity=0.434  Sum_probs=15.8

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -.||..|.||||||+.+
T Consensus       166 IlWGppG~GKTtlArli  182 (554)
T KOG2028|consen  166 ILWGPPGTGKTTLARLI  182 (554)
T ss_pred             EEecCCCCchHHHHHHH
Confidence            78999999999999976

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=94.90  E-value=0.03  Score=47.77  Aligned_cols=43  Identities=16%  Similarity=0.101  Sum_probs=33.1

Q ss_pred             CceeecchhHHHHHHHHhcCCCC-CcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDV-DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~-~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.+.-++.|.+.+...+-. .+-+.|..|+||||+|+.+.
T Consensus        21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilA   64 (507)
T PRK06645         21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIA   64 (507)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence            36899999888887766554432 23678999999999999864

>PRK06893 DNA replication initiation factor; Validated

Probab=94.89  E-value=0.016  Score=43.66  Aligned_cols=19  Identities=26%  Similarity=0.129  Sum_probs=17.0

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      -++|..|+|||+|++++.+
T Consensus        43 ~l~G~~G~GKThL~~ai~~   61 (229)
T PRK06893         43 YIWGGKSSGKSHLLKAVSN   61 (229)
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            6889999999999998753

>PRK06620 hypothetical protein; Validated

Probab=94.87  E-value=0.018  Score=43.38  Aligned_cols=18  Identities=28%  Similarity=0.189  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      -|+|..|+|||+|++.+.
T Consensus        48 ~l~Gp~G~GKThLl~a~~   65 (214)
T PRK06620         48 LIKGPSSSGKTYLTKIWQ   65 (214)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            889999999999999864

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=94.86  E-value=0.028  Score=50.68  Aligned_cols=42  Identities=14%  Similarity=0.180  Sum_probs=33.5

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .++||.++-++.|.+++...+.... -++|.-|+||||+|+.+
T Consensus        16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriL   58 (830)
T PRK07003         16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIF   58 (830)
T ss_pred             HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHH
Confidence            4699999999999988866543333 67899999999999854

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=94.86  E-value=0.036  Score=43.77  Aligned_cols=40  Identities=20%  Similarity=0.260  Sum_probs=29.1

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      ..++|.++....+...+.....  +-+.|..|+|||+||+.+
T Consensus        24 ~~~~g~~~~~~~~l~a~~~~~~--vll~G~PG~gKT~la~~l   63 (329)
T COG0714          24 KVVVGDEEVIELALLALLAGGH--VLLEGPPGVGKTLLARAL   63 (329)
T ss_pred             CeeeccHHHHHHHHHHHHcCCC--EEEECCCCccHHHHHHHH
Confidence            4588877777766555544322  378899999999999975

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=94.85  E-value=0.032  Score=42.76  Aligned_cols=40  Identities=13%  Similarity=0.256  Sum_probs=28.7

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      ++|+|.+..++.|.--...  .+++-++|..|+|||+||+.+
T Consensus         3 ~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l   42 (206)
T PF01078_consen    3 SDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRL   42 (206)
T ss_dssp             CCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHH
T ss_pred             hhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHH
Confidence            5789998877776543333  345689999999999999975

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=94.83  E-value=0.031  Score=50.25  Aligned_cols=42  Identities=14%  Similarity=0.104  Sum_probs=33.7

Q ss_pred             CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V  103 (106)
                      .+|||.+..++.|...|...+... +-+.|.-|+||||+|+.+
T Consensus        15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~l   57 (824)
T PRK07764         15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARIL   57 (824)
T ss_pred             HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHH
Confidence            469999998888888887654433 367899999999999865

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.71  E-value=0.036  Score=48.42  Aligned_cols=42  Identities=17%  Similarity=0.141  Sum_probs=32.1

Q ss_pred             CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V  103 (106)
                      .+++|.+.-+..|.+.+...+... +-++|..|+||||+|..+
T Consensus        16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~l   58 (620)
T PRK14954         16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVF   58 (620)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHH
Confidence            468999988888887775544333 367899999999999753

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=94.68  E-value=0.042  Score=43.05  Aligned_cols=41  Identities=17%  Similarity=0.109  Sum_probs=27.0

Q ss_pred             ceeecchhHHHHHHHHh---cC------C-C---C--CcceEecCCCcHHHHHHhh
Q 046733           63 FAYGRDGDRNKIINRLS---AL------N-D---V--DTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        63 ~vvGrd~~~~~lv~~L~---~~------~-~---~--~~~IvGmGGiGKTTLA~~V  103 (106)
                      .++|.++-++.|.++..   ..      . .   .  .+-++|..|.||||+|+.+
T Consensus        23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~i   78 (284)
T TIGR02880        23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRM   78 (284)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHH
Confidence            68999877777655321   10      0 0   1  1257799999999999654

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>CHL00181 cbbX CbbX; Provisional

Probab=94.67  E-value=0.037  Score=43.61  Aligned_cols=43  Identities=19%  Similarity=0.101  Sum_probs=28.1

Q ss_pred             CceeecchhHHHHHHH---HhcC------C---C-CC--cceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINR---LSAL------N---D-VD--TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~---L~~~------~---~-~~--~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++-++.|.++   +.-.      .   . ..  +-+.|..|.||||+|+.+.
T Consensus        23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la   80 (287)
T CHL00181         23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMA   80 (287)
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHH
Confidence            3689998777755443   2111      0   0 11  2567999999999999874

>PRK08727 hypothetical protein; Validated

Probab=94.63  E-value=0.046  Score=41.38  Aligned_cols=20  Identities=20%  Similarity=0.184  Sum_probs=17.5

Q ss_pred             cceEecCCCcHHHHHHhhhc
Q 046733           86 TVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +-|+|..|+|||.|++++++
T Consensus        44 l~l~G~~G~GKThL~~a~~~   63 (233)
T PRK08727         44 LYLSGPAGTGKTHLALALCA   63 (233)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            38899999999999998753

>cd00879 Sar1 Sar1 subfamily

Probab=94.57  E-value=0.044  Score=38.83  Aligned_cols=20  Identities=15%  Similarity=0.378  Sum_probs=17.3

Q ss_pred             CcceEecCCCcHHHHHHhhh
Q 046733           85 DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+.|+|.+|+|||||...+.
T Consensus        21 ki~ilG~~~~GKStLi~~l~   40 (190)
T cd00879          21 KILFLGLDNAGKTTLLHMLK   40 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            34999999999999998764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=94.54  E-value=0.045  Score=38.69  Aligned_cols=33  Identities=15%  Similarity=0.318  Sum_probs=22.1

Q ss_pred             HHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           72 NKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        72 ~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.+.+++......++.++|..|+|||||...+.
T Consensus         4 ~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~   36 (174)
T cd04153           4 SSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFL   36 (174)
T ss_pred             hHHHHHhcCCCccEEEEECCCCCCHHHHHHHHc
Confidence            344554433222345899999999999998764

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=94.53  E-value=0.041  Score=46.02  Aligned_cols=43  Identities=21%  Similarity=0.329  Sum_probs=29.0

Q ss_pred             CceeecchhHHHHHHHH---hcCC-----CC----CcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRL---SALN-----DV----DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L---~~~~-----~~----~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++++.+++   ....     ..    .+-++|..|.|||+||+.+.
T Consensus        55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA  109 (495)
T TIGR01241        55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVA  109 (495)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHH
Confidence            46889887776665543   2211     01    22677999999999999874

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=94.53  E-value=0.025  Score=41.51  Aligned_cols=18  Identities=33%  Similarity=0.414  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        34 ~l~G~nGsGKSTLl~~i~   51 (218)
T cd03255          34 AIVGPSGSGKSTLLNILG   51 (218)
T ss_pred             EEEcCCCCCHHHHHHHHh
Confidence            999999999999999864

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=94.52  E-value=0.037  Score=46.86  Aligned_cols=42  Identities=19%  Similarity=0.474  Sum_probs=31.0

Q ss_pred             CceeecchhHHHHHHHHhcC-----------CC---CCcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSAL-----------ND---VDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~-----------~~---~~~~IvGmGGiGKTTLA~~V  103 (106)
                      ..++|.++.++.+...+...           ..   .++-++|..|+|||+||+.+
T Consensus        12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraL   67 (441)
T TIGR00390        12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRL   67 (441)
T ss_pred             hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHH
Confidence            47999999888886555421           00   12378899999999999975

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=94.49  E-value=0.048  Score=44.29  Aligned_cols=42  Identities=12%  Similarity=0.154  Sum_probs=33.9

Q ss_pred             CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V  103 (106)
                      ..++|.++-.+.+...+...+-.. +-|.|.-|+||||||..+
T Consensus        23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~l   65 (351)
T PRK09112         23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHL   65 (351)
T ss_pred             hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHH
Confidence            579999998888888886655433 378899999999999864

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=94.49  E-value=0.041  Score=45.98  Aligned_cols=42  Identities=21%  Similarity=0.222  Sum_probs=33.3

Q ss_pred             CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V  103 (106)
                      .+++|.+..++.|.+.+....... +-++|..|+||||+|+.+
T Consensus        17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~l   59 (451)
T PRK06305         17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIF   59 (451)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHH
Confidence            469999998888888886544333 267899999999999865

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=94.45  E-value=0.017  Score=47.17  Aligned_cols=19  Identities=26%  Similarity=0.537  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      -++||.|.||||..|.++.
T Consensus        23 lVvGMAGSGKTTF~QrL~~   41 (366)
T KOG1532|consen   23 LVVGMAGSGKTTFMQRLNS   41 (366)
T ss_pred             EEEecCCCCchhHHHHHHH
Confidence            7789999999999998764

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=94.43  E-value=0.038  Score=45.90  Aligned_cols=43  Identities=12%  Similarity=0.308  Sum_probs=30.0

Q ss_pred             CceeecchhHHHHHHHHhc-------C-C--------CCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSA-------L-N--------DVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~-------~-~--------~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..|+|.++.++.|...+..       . .        ..++-++|..|+|||+||+.+.
T Consensus        71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA  129 (412)
T PRK05342         71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLA  129 (412)
T ss_pred             hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHH
Confidence            3699999888877443311       0 0        0123788999999999999864

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=94.40  E-value=0.027  Score=41.08  Aligned_cols=18  Identities=33%  Similarity=0.525  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        31 ~l~G~nGsGKSTLl~~l~   48 (211)
T cd03225          31 LIVGPNGSGKSTLLRLLN   48 (211)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=94.36  E-value=0.06  Score=39.17  Aligned_cols=34  Identities=15%  Similarity=0.132  Sum_probs=23.0

Q ss_pred             hHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           70 DRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        70 ~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +...++...... ...+.|+|..|.|||||.+.+.
T Consensus        13 ~~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~aL~   46 (186)
T cd01130          13 LQAAYLWLAVEA-RKNILISGGTGSGKTTLLNALL   46 (186)
T ss_pred             HHHHHHHHHHhC-CCEEEEECCCCCCHHHHHHHHH
Confidence            344445444432 2234999999999999998764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.34  E-value=0.05  Score=46.06  Aligned_cols=42  Identities=17%  Similarity=0.181  Sum_probs=33.4

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .+++|.+.-++.|.+.+........ -+.|..|+||||+|+.+
T Consensus        16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~l   58 (486)
T PRK14953         16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARIL   58 (486)
T ss_pred             HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence            3689999999999888866443333 57899999999999874

>PRK09087 hypothetical protein; Validated

Probab=94.33  E-value=0.029  Score=42.67  Aligned_cols=19  Identities=26%  Similarity=0.188  Sum_probs=17.0

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +-|+|..|+|||+|++..+
T Consensus        47 l~l~G~~GsGKThLl~~~~   65 (226)
T PRK09087         47 VVLAGPVGSGKTHLASIWR   65 (226)
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3899999999999999765

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=94.32  E-value=0.029  Score=41.20  Aligned_cols=18  Identities=39%  Similarity=0.521  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        33 ~i~G~nGsGKSTLl~~l~   50 (216)
T TIGR00960        33 FLVGHSGAGKSTFLKLIL   50 (216)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=94.29  E-value=0.049  Score=45.00  Aligned_cols=42  Identities=14%  Similarity=0.116  Sum_probs=32.3

Q ss_pred             CceeecchhHHHHHHHHhcCC---------CC-CcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALN---------DV-DTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~---------~~-~~~IvGmGGiGKTTLA~~V  103 (106)
                      .+|+|.+.-++.|.+.+....         .. .+-++|..|+|||++|..+
T Consensus         5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~l   56 (394)
T PRK07940          5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAF   56 (394)
T ss_pred             hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHH
Confidence            468999988888888886543         11 1257899999999999864

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=94.26  E-value=0.056  Score=43.06  Aligned_cols=44  Identities=18%  Similarity=0.344  Sum_probs=35.2

Q ss_pred             CceeecchhHHHHHHHHhcCCCC--CcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSALNDV--DTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~--~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ..++|.......+.+.+..-...  .+-|+|-.|.||+++|+.++.
T Consensus         6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~   51 (326)
T PRK11608          6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY   51 (326)
T ss_pred             CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence            46899998888888887543332  358889999999999999874

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=94.25  E-value=0.059  Score=43.99  Aligned_cols=41  Identities=15%  Similarity=0.195  Sum_probs=33.1

Q ss_pred             CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKN  102 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~  102 (106)
                      .+++|.++-++.|.+.+...+-.. +-+.|..|+||+|||..
T Consensus        19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~   60 (365)
T PRK07471         19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYR   60 (365)
T ss_pred             hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHH
Confidence            479999988888888887655443 37889999999999975

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=94.21  E-value=0.031  Score=41.01  Aligned_cols=18  Identities=28%  Similarity=0.407  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        32 ~i~G~nGsGKSTLl~~l~   49 (220)
T cd03263          32 GLLGHNGAGKTTTLKMLT   49 (220)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999875

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=94.19  E-value=0.032  Score=41.57  Aligned_cols=18  Identities=33%  Similarity=0.516  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        30 ~l~G~nGsGKSTLl~~l~   47 (235)
T cd03261          30 AIIGPSGSGKSTLLRLIV   47 (235)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=94.10  E-value=0.033  Score=41.36  Aligned_cols=18  Identities=22%  Similarity=0.505  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        31 ~i~G~nGsGKSTLl~~l~   48 (241)
T cd03256          31 ALIGPSGAGKSTLLRCLN   48 (241)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=94.09  E-value=0.063  Score=41.34  Aligned_cols=19  Identities=21%  Similarity=0.295  Sum_probs=16.6

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +-+.|..|+|||+||+.+.
T Consensus        24 vLL~G~~GtGKT~lA~~la   42 (262)
T TIGR02640        24 VHLRGPAGTGKTTLAMHVA   42 (262)
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            3778999999999999864

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=94.09  E-value=0.034  Score=40.69  Aligned_cols=18  Identities=33%  Similarity=0.626  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        32 ~l~G~nGsGKSTLl~~i~   49 (214)
T TIGR02673        32 FLTGPSGAGKTTLLKLLY   49 (214)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999764

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR00763 lon ATP-dependent protease La

Probab=94.07  E-value=0.044  Score=48.51  Aligned_cols=43  Identities=26%  Similarity=0.338  Sum_probs=32.3

Q ss_pred             CceeecchhHHHHHHHHhcC----CCC-C-cceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSAL----NDV-D-TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~----~~~-~-~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++-++.|.+++...    ... . +-++|..|+|||+||+.+-
T Consensus       320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA  368 (775)
T TIGR00763       320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIA  368 (775)
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHH
Confidence            46899999999998876421    111 1 2788999999999999763

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=94.05  E-value=0.037  Score=39.79  Aligned_cols=18  Identities=28%  Similarity=0.471  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~i~G~nGsGKSTLl~~l~   47 (178)
T cd03229          30 ALLGPSGSGKSTLLRCIA   47 (178)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=94.04  E-value=0.036  Score=40.54  Aligned_cols=19  Identities=21%  Similarity=0.347  Sum_probs=17.1

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|.|||||.+.+.
T Consensus        28 ~~i~G~nGsGKSTLl~~l~   46 (211)
T cd03264          28 YGLLGPNGAGKTTLMRILA   46 (211)
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            3999999999999999875

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=94.03  E-value=0.036  Score=40.88  Aligned_cols=18  Identities=33%  Similarity=0.494  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        34 ~i~G~nGsGKSTLl~~l~   51 (220)
T cd03293          34 ALVGPSGCGKSTLLRIIA   51 (220)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999874

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=94.03  E-value=0.035  Score=40.49  Aligned_cols=18  Identities=44%  Similarity=0.689  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        31 ~i~G~nGsGKSTLl~~l~   48 (214)
T cd03292          31 FLVGPSGAGKSTLLKLIY   48 (214)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=94.02  E-value=0.036  Score=40.56  Aligned_cols=18  Identities=28%  Similarity=0.482  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~i~G~nGsGKSTLl~~l~   47 (213)
T cd03259          30 ALLGPSGCGKTTLLRLIA   47 (213)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=94.01  E-value=0.036  Score=39.98  Aligned_cols=18  Identities=22%  Similarity=0.481  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        22 ~i~G~nGsGKSTLl~~i~   39 (190)
T TIGR01166        22 ALLGANGAGKSTLLLHLN   39 (190)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999764

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=93.99  E-value=0.036  Score=41.28  Aligned_cols=18  Identities=33%  Similarity=0.549  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        32 ~l~G~nGsGKSTLl~~l~   49 (243)
T TIGR02315        32 AIIGPSGAGKSTLLRCIN   49 (243)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=93.99  E-value=0.037  Score=40.91  Aligned_cols=18  Identities=22%  Similarity=0.477  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~i~G~nGsGKSTLl~~i~   47 (227)
T cd03260          30 ALIGPSGCGKSTLLRLLN   47 (227)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999864

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=93.98  E-value=0.037  Score=40.47  Aligned_cols=18  Identities=28%  Similarity=0.427  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~i~G~nGsGKSTLl~~l~   47 (210)
T cd03269          30 GLLGPNGAGKTTTIRMIL   47 (210)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999763

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01817 nifA Nif-specific regulatory protein

Probab=93.98  E-value=0.07  Score=44.91  Aligned_cols=44  Identities=16%  Similarity=0.305  Sum_probs=35.5

Q ss_pred             CceeecchhHHHHHHHHhcCCCC--CcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSALNDV--DTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~--~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ..++|......++++.+..-...  .+-|+|-.|.||+++|+.+++
T Consensus       196 ~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~  241 (534)
T TIGR01817       196 DGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHY  241 (534)
T ss_pred             CceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHH
Confidence            47999999999998887543322  348889999999999999875

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=93.97  E-value=0.081  Score=49.00  Aligned_cols=43  Identities=19%  Similarity=0.269  Sum_probs=33.7

Q ss_pred             CceeecchhHHHHHHHHhc---CC-CCCc-ceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSA---LN-DVDT-VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~---~~-~~~~-~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..+.||+++.+.|...|..   .. ..++ -|.|..|.|||++++.|.
T Consensus       755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VL  802 (1164)
T PTZ00112        755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVI  802 (1164)
T ss_pred             CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHH
Confidence            4789999999999888743   11 1233 589999999999999874

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=93.97  E-value=0.063  Score=46.09  Aligned_cols=42  Identities=17%  Similarity=0.140  Sum_probs=33.8

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .+++|.+.-++.|.+.+...+..+. =+.|..|+||||+|+.+
T Consensus        16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~l   58 (559)
T PRK05563         16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIF   58 (559)
T ss_pred             HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence            4699999999999888876544433 56899999999999864

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=93.96  E-value=0.089  Score=43.06  Aligned_cols=42  Identities=21%  Similarity=0.232  Sum_probs=33.5

Q ss_pred             ceeecchhHHHHHHHHhc----CCCCCcceEecCCCcHHHHHHhhh
Q 046733           63 FAYGRDGDRNKIINRLSA----LNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        63 ~vvGrd~~~~~lv~~L~~----~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+.+|+++.+.+...|..    ....++-|.|..|.|||+.++.|.
T Consensus        18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~   63 (366)
T COG1474          18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVM   63 (366)
T ss_pred             cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHH
Confidence            588999999999887743    122245888999999999999875

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=93.95  E-value=0.066  Score=45.36  Aligned_cols=42  Identities=19%  Similarity=0.426  Sum_probs=31.9

Q ss_pred             CceeecchhHHHHHHHHhcC--------C------CCCcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSAL--------N------DVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~--------~------~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      ..++|.++.++.+...+...        .      ..++-++|..|+||||||+.+
T Consensus        15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~L   70 (443)
T PRK05201         15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRL   70 (443)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHH
Confidence            47999999999987776431        0      112378899999999999965

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=93.95  E-value=0.036  Score=43.88  Aligned_cols=17  Identities=35%  Similarity=0.425  Sum_probs=16.1

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|-.|.|||||++.+
T Consensus        37 givGeSGsGKSTL~r~l   53 (252)
T COG1124          37 GIVGESGSGKSTLARLL   53 (252)
T ss_pred             EEEcCCCCCHHHHHHHH
Confidence            99999999999999975

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=93.93  E-value=0.072  Score=38.28  Aligned_cols=19  Identities=21%  Similarity=0.504  Sum_probs=16.8

Q ss_pred             CcceEecCCCcHHHHHHhh
Q 046733           85 DTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~V  103 (106)
                      ++.++|.+|+|||||...+
T Consensus        19 kv~lvG~~~vGKTsli~~~   37 (182)
T PTZ00133         19 RILMVGLDAAGKTTILYKL   37 (182)
T ss_pred             EEEEEcCCCCCHHHHHHHH
Confidence            4589999999999999875

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=93.91  E-value=0.045  Score=37.85  Aligned_cols=41  Identities=20%  Similarity=0.320  Sum_probs=27.8

Q ss_pred             eecchhHHHHHHHHhcCC--CCCcceEecCCCcHHHHHHhhhc
Q 046733           65 YGRDGDRNKIINRLSALN--DVDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        65 vGrd~~~~~lv~~L~~~~--~~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ||.-...+++.+.+..-.  ...+-|.|-.|.||+++|+.+++
T Consensus         1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~   43 (138)
T PF14532_consen    1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHR   43 (138)
T ss_dssp             --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHh
Confidence            455666677776664322  22348889999999999998875

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=93.90  E-value=0.072  Score=47.61  Aligned_cols=43  Identities=23%  Similarity=0.365  Sum_probs=33.7

Q ss_pred             CceeecchhHHHHHHHHhcCC-----CCCc-ceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALN-----DVDT-VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~-----~~~~-~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+.+|.++-+++|+++|....     .... -++|..|+||||+|+.+.
T Consensus       322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia  370 (784)
T PRK10787        322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIA  370 (784)
T ss_pred             hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHH
Confidence            479999999999999885311     1122 788999999999999764

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=93.88  E-value=0.04  Score=40.76  Aligned_cols=18  Identities=22%  Similarity=0.396  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        40 ~i~G~nGsGKSTLl~~i~   57 (228)
T PRK10584         40 ALIGESGSGKSTLLAILA   57 (228)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999875

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=93.88  E-value=0.067  Score=42.24  Aligned_cols=43  Identities=16%  Similarity=0.210  Sum_probs=33.1

Q ss_pred             CceeecchhHHHHHHHH---hcC-CCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRL---SAL-NDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L---~~~-~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.+.+++.|++-.   ... ...++=++|.-|.|||+|++++.
T Consensus        27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall   73 (249)
T PF05673_consen   27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALL   73 (249)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHH
Confidence            57999999999987643   222 22345889999999999999875

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=93.88  E-value=0.034  Score=41.16  Aligned_cols=19  Identities=42%  Similarity=0.704  Sum_probs=17.5

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .|+|..|.|||||.+++++
T Consensus        26 ~i~G~nGsGKStll~al~~   44 (197)
T cd03278          26 AIVGPNGSGKSNIIDAIRW   44 (197)
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            8999999999999999864

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=93.85  E-value=0.083  Score=42.11  Aligned_cols=17  Identities=24%  Similarity=0.276  Sum_probs=15.5

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|.|..|+||||||+.+
T Consensus        66 GIaG~~GSGKSTlar~L   82 (290)
T TIGR00554        66 SIAGSVAVGKSTTARIL   82 (290)
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            89999999999999864

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=93.83  E-value=0.041  Score=41.07  Aligned_cols=18  Identities=22%  Similarity=0.481  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        31 ~i~G~nGsGKSTLl~~l~   48 (236)
T TIGR03864        31 ALLGPNGAGKSTLFSLLT   48 (236)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999874

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=93.82  E-value=0.04  Score=40.44  Aligned_cols=18  Identities=33%  Similarity=0.449  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        27 ~i~G~nGsGKSTLl~~l~   44 (214)
T cd03297          27 GIFGASGAGKSTLLRCIA   44 (214)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=93.82  E-value=0.041  Score=40.83  Aligned_cols=18  Identities=33%  Similarity=0.470  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        35 ~l~G~nGsGKSTLl~~l~   52 (233)
T cd03258          35 GIIGRSGAGKSTLIRCIN   52 (233)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=93.81  E-value=0.041  Score=40.19  Aligned_cols=18  Identities=33%  Similarity=0.525  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~l~G~nGsGKSTLl~~l~   47 (213)
T cd03301          30 VLLGPSGCGKTTTLRMIA   47 (213)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=93.79  E-value=0.042  Score=41.11  Aligned_cols=18  Identities=28%  Similarity=0.471  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        32 ~i~G~nGsGKSTLl~~l~   49 (239)
T cd03296          32 ALLGPSGSGKTTLLRLIA   49 (239)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=93.79  E-value=0.041  Score=40.30  Aligned_cols=18  Identities=44%  Similarity=0.617  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        29 ~l~G~nGsGKSTLl~~l~   46 (213)
T cd03235          29 AIVGPNGAGKSTLLKAIL   46 (213)
T ss_pred             EEECCCCCCHHHHHHHHc
Confidence            999999999999999763

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=93.79  E-value=0.042  Score=39.97  Aligned_cols=18  Identities=33%  Similarity=0.425  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~l~G~nGsGKSTLl~~l~   47 (195)
T PRK13541         30 YIKGANGCGKSSLLRMIA   47 (195)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999764

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=93.79  E-value=0.042  Score=39.49  Aligned_cols=18  Identities=22%  Similarity=0.420  Sum_probs=16.3

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|.|..|.||||||+.+.
T Consensus        22 ~i~G~~GsGKstla~~l~   39 (184)
T TIGR00455        22 WLTGLSGSGKSTIANALE   39 (184)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            888999999999999764

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=93.78  E-value=0.041  Score=40.54  Aligned_cols=18  Identities=28%  Similarity=0.379  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~i~G~nGsGKSTLl~~i~   47 (220)
T cd03265          30 GLLGPNGAGKTTTIKMLT   47 (220)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=93.77  E-value=0.043  Score=40.04  Aligned_cols=18  Identities=28%  Similarity=0.401  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~i~G~nGsGKSTLl~~l~   47 (205)
T cd03226          30 ALTGKNGAGKTTLAKILA   47 (205)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=93.75  E-value=0.044  Score=40.27  Aligned_cols=18  Identities=33%  Similarity=0.422  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        35 ~i~G~nGsGKSTLl~~i~   52 (221)
T TIGR02211        35 AIVGSSGSGKSTLLHLLG   52 (221)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999874

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=93.74  E-value=0.044  Score=40.84  Aligned_cols=18  Identities=33%  Similarity=0.422  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        39 ~l~G~nGsGKSTLl~~l~   56 (233)
T PRK11629         39 AIVGSSGSGKSTLLHLLG   56 (233)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999874

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=93.73  E-value=0.05  Score=38.22  Aligned_cols=19  Identities=37%  Similarity=0.576  Sum_probs=17.4

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .|+|..|.||||++.+|.+
T Consensus        23 vi~G~Ng~GKStil~ai~~   41 (202)
T PF13476_consen   23 VIYGPNGSGKSTILEAIRY   41 (202)
T ss_dssp             EEEESTTSSHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            8899999999999998765

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=93.68  E-value=0.043  Score=40.69  Aligned_cols=18  Identities=28%  Similarity=0.499  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~l~G~nGsGKSTLl~~l~   47 (236)
T cd03219          30 GLIGPNGAGKTTLFNLIS   47 (236)
T ss_pred             EEECCCCCCHHHHHHHHc
Confidence            999999999999999864

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=93.68  E-value=0.059  Score=47.21  Aligned_cols=43  Identities=19%  Similarity=0.187  Sum_probs=31.1

Q ss_pred             CceeecchhHHHHHHHHhcC---C----C------CCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSAL---N----D------VDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~---~----~------~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .++.|.++.++.|.+++...   .    .      ..+-++|..|.||||||+.+.
T Consensus       178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia  233 (733)
T TIGR01243       178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVA  233 (733)
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHH
Confidence            35889998888887765321   0    0      112688999999999999875

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=93.66  E-value=0.047  Score=37.78  Aligned_cols=17  Identities=29%  Similarity=0.501  Sum_probs=15.7

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|..|.|||||++.+
T Consensus        19 ~I~GpSGsGKSTLl~~l   35 (107)
T cd00820          19 LITGDSGIGKTELALEL   35 (107)
T ss_pred             EEEcCCCCCHHHHHHHh
Confidence            89999999999999874

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=93.64  E-value=0.045  Score=40.22  Aligned_cols=18  Identities=33%  Similarity=0.451  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        35 ~i~G~nGsGKSTLl~~l~   52 (228)
T cd03257          35 GLVGESGSGKSTLARAIL   52 (228)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999764

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=93.64  E-value=0.047  Score=39.98  Aligned_cols=18  Identities=28%  Similarity=0.375  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        31 ~l~G~nGsGKSTLl~~l~   48 (204)
T PRK13538         31 QIEGPNGAGKTSLLRILA   48 (204)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999874

>TIGR03689 pup_AAA proteasome ATPase

Probab=93.63  E-value=0.077  Score=45.51  Aligned_cols=44  Identities=18%  Similarity=0.186  Sum_probs=31.9

Q ss_pred             CceeecchhHHHHHHHHhcC---C----C------CCcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSAL---N----D------VDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~---~----~------~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .++.|.+..++.|.+.+...   .    .      ..+-++|..|.|||++|+++++
T Consensus       182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~  238 (512)
T TIGR03689       182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVAN  238 (512)
T ss_pred             HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHH
Confidence            45778998888887765321   0    0      1236789999999999999864

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=93.63  E-value=0.084  Score=45.54  Aligned_cols=42  Identities=14%  Similarity=0.177  Sum_probs=33.9

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .+++|.+.-+..|..++...+-... -+.|..|.||||+|+.+
T Consensus        16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~l   58 (563)
T PRK06647         16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAF   58 (563)
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence            4699999999999988876543332 68899999999999875

>PRK14738 gmk guanylate kinase; Provisional

Probab=93.62  E-value=0.049  Score=40.47  Aligned_cols=18  Identities=39%  Similarity=0.530  Sum_probs=16.2

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|+|||||++.+.
T Consensus        17 vi~GpsG~GK~tl~~~L~   34 (206)
T PRK14738         17 VISGPSGVGKDAVLARMR   34 (206)
T ss_pred             EEECcCCCCHHHHHHHHH
Confidence            689999999999999874

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=93.61  E-value=0.046  Score=40.07  Aligned_cols=18  Identities=22%  Similarity=0.385  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        35 ~i~G~nGsGKSTLl~~l~   52 (218)
T cd03266          35 GLLGPNGAGKTTTLRMLA   52 (218)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.60  E-value=0.078  Score=45.64  Aligned_cols=42  Identities=14%  Similarity=0.197  Sum_probs=33.3

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .+++|.++-++.|.+.+........ -+.|..|+||||+|+.+
T Consensus        16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~l   58 (576)
T PRK14965         16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARIL   58 (576)
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence            4699999888888888866543332 57899999999999875

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=93.60  E-value=0.091  Score=37.67  Aligned_cols=32  Identities=16%  Similarity=0.331  Sum_probs=21.4

Q ss_pred             HHHHHHHhc-CCCCCcceEecCCCcHHHHHHhh
Q 046733           72 NKIINRLSA-LNDVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        72 ~~lv~~L~~-~~~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      .++.+++.. ....++.|+|..|+|||||...+
T Consensus         5 ~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l   37 (184)
T smart00178        5 YDILASLGLWNKHAKILFLGLDNAGKTTLLHML   37 (184)
T ss_pred             HHHHHHhccccccCEEEEECCCCCCHHHHHHHH
Confidence            344554322 22234599999999999998865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=93.59  E-value=0.046  Score=40.62  Aligned_cols=18  Identities=39%  Similarity=0.493  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~i~G~nGsGKSTLl~~l~   47 (243)
T TIGR01978        30 AIMGPNGSGKSTLSKTIA   47 (243)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=93.56  E-value=0.05  Score=39.48  Aligned_cols=18  Identities=33%  Similarity=0.429  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        28 ~i~G~nGsGKSTLl~~l~   45 (206)
T TIGR03608        28 AIIGESGSGKSTLLNIIG   45 (206)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999764

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR00602 rad24 checkpoint protein rad24

Probab=93.56  E-value=0.075  Score=46.67  Aligned_cols=43  Identities=19%  Similarity=0.068  Sum_probs=33.7

Q ss_pred             CceeecchhHHHHHHHHhcCCC----CCc-ceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALND----VDT-VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~----~~~-~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++.+..+|.....    .++ -|+|..|.||||+++.+.
T Consensus        84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la  131 (637)
T TIGR00602        84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILS  131 (637)
T ss_pred             HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHH
Confidence            5799999999998888864321    233 888999999999999764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=93.56  E-value=0.072  Score=44.72  Aligned_cols=43  Identities=16%  Similarity=0.134  Sum_probs=30.4

Q ss_pred             ceeecchhHHHHHHHHhc---CC---------C-CCcceEecCCCcHHHHHHhhhc
Q 046733           63 FAYGRDGDRNKIINRLSA---LN---------D-VDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        63 ~vvGrd~~~~~lv~~L~~---~~---------~-~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ++.|.++.++.|.+.+..   ..         . ..+-++|..|.|||+||++|.+
T Consensus       184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~  239 (438)
T PTZ00361        184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN  239 (438)
T ss_pred             HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            577888888887766521   10         0 0126789999999999998753

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=93.55  E-value=0.048  Score=40.01  Aligned_cols=18  Identities=33%  Similarity=0.602  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~i~G~nGsGKSTLl~~l~   47 (222)
T cd03224          30 ALLGRNGAGKTTLLKTIM   47 (222)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999764

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=93.53  E-value=0.11  Score=37.08  Aligned_cols=36  Identities=14%  Similarity=0.080  Sum_probs=24.6

Q ss_pred             hhHHHHHHHHhcCC-CCCc-ceEecCCCcHHHHHHhhh
Q 046733           69 GDRNKIINRLSALN-DVDT-VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        69 ~~~~~lv~~L~~~~-~~~~-~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++...+.+.|...- ...+ .+.|.-|.|||||++.+.
T Consensus         6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~   43 (133)
T TIGR00150         6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLL   43 (133)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHH
Confidence            44556666554321 2234 888999999999999764

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=93.52  E-value=0.05  Score=40.75  Aligned_cols=18  Identities=39%  Similarity=0.556  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        31 ~i~G~nGsGKSTLl~~l~   48 (242)
T cd03295          31 VLIGPSGSGKTTTMKMIN   48 (242)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999875

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=93.50  E-value=0.047  Score=41.34  Aligned_cols=19  Identities=32%  Similarity=0.595  Sum_probs=17.7

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .|+|..|.|||||..++++
T Consensus        29 ~IvG~NGsGKStll~Ai~~   47 (251)
T cd03273          29 AITGLNGSGKSNILDAICF   47 (251)
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            9999999999999999874

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG3899 Predicted ATPase [General function prediction only]

Probab=93.50  E-value=0.072  Score=47.94  Aligned_cols=41  Identities=17%  Similarity=0.481  Sum_probs=33.1

Q ss_pred             eeecchhHHHHHHHHhcCCCC--Cc-ceEecCCCcHHHHHHhhh
Q 046733           64 AYGRDGDRNKIINRLSALNDV--DT-VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        64 vvGrd~~~~~lv~~L~~~~~~--~~-~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++||+.+.+.|...+-+-...  .+ .++|..|||||+|++.|.
T Consensus         2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~   45 (849)
T COG3899           2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVH   45 (849)
T ss_pred             CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHH
Confidence            689999999998877543322  34 899999999999999874

>PRK10536 hypothetical protein; Provisional

Probab=93.47  E-value=0.093  Score=41.66  Aligned_cols=40  Identities=13%  Similarity=0.139  Sum_probs=30.9

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      ..+.++......++..|.+..  -+.+.|..|.|||+||.++
T Consensus        55 ~~i~p~n~~Q~~~l~al~~~~--lV~i~G~aGTGKT~La~a~   94 (262)
T PRK10536         55 SPILARNEAQAHYLKAIESKQ--LIFATGEAGCGKTWISAAK   94 (262)
T ss_pred             ccccCCCHHHHHHHHHHhcCC--eEEEECCCCCCHHHHHHHH
Confidence            457788888888888776532  2388899999999999864

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=93.43  E-value=0.053  Score=41.50  Aligned_cols=18  Identities=33%  Similarity=0.505  Sum_probs=15.6

Q ss_pred             ceE--ecCCCcHHHHHHhhh
Q 046733           87 VIV--GIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~Iv--GmGGiGKTTLA~~Vy  104 (106)
                      .||  |..|.||||+|.+++
T Consensus        25 viW~TGLSGsGKSTiA~ale   44 (197)
T COG0529          25 VIWFTGLSGSGKSTIANALE   44 (197)
T ss_pred             EEEeecCCCCCHHHHHHHHH
Confidence            455  999999999999875

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=93.43  E-value=0.084  Score=42.29  Aligned_cols=42  Identities=19%  Similarity=0.371  Sum_probs=31.3

Q ss_pred             eeecchhHHHHHHHHhcCCCC--CcceEecCCCcHHHHHHhhhc
Q 046733           64 AYGRDGDRNKIINRLSALNDV--DTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        64 vvGrd~~~~~lv~~L~~~~~~--~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ++|......++.+.+..-...  .+-|+|-.|.||+++|+.+++
T Consensus         1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~   44 (329)
T TIGR02974         1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHY   44 (329)
T ss_pred             CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence            467777777777776543333  348889999999999999875

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>PRK06526 transposase; Provisional

Probab=93.42  E-value=0.053  Score=42.10  Aligned_cols=19  Identities=26%  Similarity=0.398  Sum_probs=16.8

Q ss_pred             CcceEecCCCcHHHHHHhh
Q 046733           85 DTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~V  103 (106)
                      ++-++|..|.|||+||..+
T Consensus       100 nlll~Gp~GtGKThLa~al  118 (254)
T PRK06526        100 NVVFLGPPGTGKTHLAIGL  118 (254)
T ss_pred             eEEEEeCCCCchHHHHHHH
Confidence            3489999999999999975

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=93.41  E-value=0.053  Score=40.53  Aligned_cols=18  Identities=28%  Similarity=0.516  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        32 ~i~G~nGsGKSTLl~~l~   49 (242)
T PRK11124         32 VLLGPSGAGKSSLLRVLN   49 (242)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>PLN02200 adenylate kinase family protein

Probab=93.41  E-value=0.051  Score=41.56  Aligned_cols=17  Identities=29%  Similarity=0.370  Sum_probs=15.4

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|+|+.|.||||+|+.+
T Consensus        47 ~I~G~PGSGKsT~a~~L   63 (234)
T PLN02200         47 FVLGGPGSGKGTQCEKI   63 (234)
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            78899999999999865

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=93.39  E-value=0.077  Score=46.07  Aligned_cols=41  Identities=17%  Similarity=0.281  Sum_probs=30.8

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++-++.+...+....  .+-++|+.|+||||||+.+-
T Consensus        18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la   58 (608)
T TIGR00764        18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMA   58 (608)
T ss_pred             hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHH
Confidence            468899887776666554432  34788999999999999753

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=93.39  E-value=0.053  Score=40.13  Aligned_cols=18  Identities=28%  Similarity=0.418  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~l~G~nGsGKSTLl~~l~   47 (232)
T cd03218          30 GLLGPNGAGKTTTFYMIV   47 (232)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=93.38  E-value=0.055  Score=40.27  Aligned_cols=18  Identities=33%  Similarity=0.477  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        37 ~i~G~nGsGKSTLl~~l~   54 (225)
T PRK10247         37 LITGPSGCGKSTLLKIVA   54 (225)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=93.38  E-value=0.054  Score=40.29  Aligned_cols=18  Identities=44%  Similarity=0.409  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        32 ~i~G~nGsGKSTLl~~l~   49 (237)
T cd03252          32 GIVGRSGSGKSTLTKLIQ   49 (237)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999764

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.37  E-value=0.096  Score=45.68  Aligned_cols=42  Identities=17%  Similarity=0.143  Sum_probs=33.0

Q ss_pred             CceeecchhHHHHHHHHhcCCCC-CcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDV-DTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~-~~~IvGmGGiGKTTLA~~V  103 (106)
                      .+++|.++-+..|..++...+.. .+-++|..|+||||+|+.+
T Consensus        16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~l   58 (620)
T PRK14948         16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARIL   58 (620)
T ss_pred             hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHH
Confidence            46899998888888888654432 2367899999999999875

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=93.37  E-value=0.056  Score=39.44  Aligned_cols=18  Identities=33%  Similarity=0.407  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~i~G~nGsGKSTLl~~l~   47 (208)
T cd03268          30 GFLGPNGAGKTTTMKIIL   47 (208)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=93.35  E-value=0.054  Score=40.62  Aligned_cols=18  Identities=33%  Similarity=0.554  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        33 ~i~G~nGsGKSTLl~~l~   50 (250)
T PRK11264         33 AIIGPSGSGKTTLLRCIN   50 (250)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999763

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.34  E-value=0.053  Score=40.78  Aligned_cols=18  Identities=22%  Similarity=0.379  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        33 ~i~G~nGsGKSTLl~~i~   50 (250)
T PRK14245         33 AFIGPSGCGKSTFLRLFN   50 (250)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999873

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=93.34  E-value=0.054  Score=40.72  Aligned_cols=18  Identities=28%  Similarity=0.571  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        35 ~l~G~nGsGKSTLl~~l~   52 (255)
T PRK11300         35 SLIGPNGAGKTTVFNCLT   52 (255)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=93.32  E-value=0.056  Score=39.84  Aligned_cols=18  Identities=33%  Similarity=0.658  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        38 ~l~G~nGsGKSTLl~~i~   55 (224)
T TIGR02324        38 ALSGPSGAGKSTLLKSLY   55 (224)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999875

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=93.32  E-value=0.055  Score=41.27  Aligned_cols=18  Identities=33%  Similarity=0.514  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        31 ~i~G~nGsGKSTLl~~l~   48 (255)
T PRK11248         31 VVLGPSGCGKTTLLNLIA   48 (255)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=93.28  E-value=0.055  Score=40.63  Aligned_cols=17  Identities=24%  Similarity=0.608  Sum_probs=16.1

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|..|.|||||.+.+
T Consensus        31 ~i~G~nGsGKSTLl~~l   47 (247)
T TIGR00972        31 ALIGPSGCGKSTLLRSL   47 (247)
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            99999999999999976

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=93.27  E-value=0.056  Score=40.35  Aligned_cols=18  Identities=39%  Similarity=0.593  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        31 ~l~G~nGsGKSTLl~~l~   48 (240)
T PRK09493         31 VIIGPSGSGKSTLLRCIN   48 (240)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999763

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=93.26  E-value=0.058  Score=39.33  Aligned_cols=18  Identities=39%  Similarity=0.593  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~l~G~nGsGKSTLl~~l~   47 (213)
T cd03262          30 VIIGPSGSGKSTLLRCIN   47 (213)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=93.24  E-value=0.079  Score=37.67  Aligned_cols=20  Identities=15%  Similarity=0.310  Sum_probs=17.4

Q ss_pred             CcceEecCCCcHHHHHHhhh
Q 046733           85 DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++.|+|..|.|||||...+.
T Consensus        20 ~i~ivG~~~~GKStlin~l~   39 (179)
T TIGR03598        20 EIAFAGRSNVGKSSLINALT   39 (179)
T ss_pred             EEEEEcCCCCCHHHHHHHHh
Confidence            34999999999999998764

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=93.22  E-value=0.06  Score=39.59  Aligned_cols=18  Identities=33%  Similarity=0.449  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.++
T Consensus        28 ~i~G~nGsGKSTLl~~l~   45 (213)
T TIGR01277        28 AIMGPSGAGKSTLLNLIA   45 (213)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999875

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.21  E-value=0.058  Score=40.52  Aligned_cols=18  Identities=22%  Similarity=0.420  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        33 ~i~G~nGsGKSTLl~~i~   50 (250)
T PRK14247         33 ALMGPSGSGKSTLLRVFN   50 (250)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=93.20  E-value=0.06  Score=40.50  Aligned_cols=18  Identities=22%  Similarity=0.468  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        36 ~i~G~nGsGKSTLl~~l~   53 (253)
T PRK14242         36 ALIGPSGCGKSTFLRCLN   53 (253)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999874

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=93.20  E-value=0.058  Score=40.83  Aligned_cols=18  Identities=33%  Similarity=0.495  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        35 ~l~G~nGsGKSTLl~~i~   52 (257)
T PRK10619         35 SIIGSSGSGKSTFLRCIN   52 (257)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=93.20  E-value=0.11  Score=43.43  Aligned_cols=43  Identities=12%  Similarity=0.321  Sum_probs=29.9

Q ss_pred             CceeecchhHHHHHHHHh-------c---CC--C------CCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLS-------A---LN--D------VDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~-------~---~~--~------~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..|+|.++.++.+..-+.       .   ..  .      .++-++|..|+|||+||+.+-
T Consensus        77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA  137 (413)
T TIGR00382        77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLA  137 (413)
T ss_pred             ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHH
Confidence            479999988888754331       1   01  0      123677999999999999763

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PRK10908 cell division protein FtsE; Provisional

Probab=93.20  E-value=0.061  Score=39.70  Aligned_cols=18  Identities=33%  Similarity=0.481  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        32 ~i~G~nGsGKSTLl~~l~   49 (222)
T PRK10908         32 FLTGHSGAGKSTLLKLIC   49 (222)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

>PRK09183 transposase/IS protein; Provisional

Probab=93.18  E-value=0.06  Score=41.68  Aligned_cols=19  Identities=26%  Similarity=0.387  Sum_probs=16.9

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||+||..+.
T Consensus       105 v~l~Gp~GtGKThLa~al~  123 (259)
T PRK09183        105 IVLLGPSGVGKTHLAIALG  123 (259)
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            4899999999999999863

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=93.17  E-value=0.1  Score=43.18  Aligned_cols=44  Identities=18%  Similarity=0.206  Sum_probs=30.9

Q ss_pred             CceeecchhHHHHHHHHh---cC-C---C------CCcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLS---AL-N---D------VDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~---~~-~---~------~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .++.|.+..++.|.+.+.   .. .   .      ..+-++|..|.|||+||+.+.+
T Consensus       145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~  201 (398)
T PTZ00454        145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH  201 (398)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            368899888888876542   11 1   0      1237889999999999998753

>PRK05642 DNA replication initiation factor; Validated

Probab=93.12  E-value=0.059  Score=40.88  Aligned_cols=19  Identities=16%  Similarity=0.316  Sum_probs=16.9

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      -|+|..|+|||.|++++.+
T Consensus        49 ~l~G~~G~GKTHLl~a~~~   67 (234)
T PRK05642         49 YLWGKDGVGRSHLLQAACL   67 (234)
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            7889999999999998753

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=93.12  E-value=0.1  Score=46.51  Aligned_cols=42  Identities=21%  Similarity=0.162  Sum_probs=33.1

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .+++|.+.-++.|.+.+...+.... =+.|..|+||||+|+.+
T Consensus        18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriL   60 (725)
T PRK07133         18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIF   60 (725)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHH
Confidence            4699999988888888866543332 57899999999999865

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=93.10  E-value=0.063  Score=40.65  Aligned_cols=18  Identities=33%  Similarity=0.457  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        36 ~i~G~nGsGKSTLl~~l~   53 (258)
T PRK11701         36 GIVGESGSGKTTLLNALS   53 (258)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999875

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=93.09  E-value=0.066  Score=38.25  Aligned_cols=18  Identities=28%  Similarity=0.573  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        31 ~i~G~nGsGKSTLl~~l~   48 (166)
T cd03223          31 LITGPSGTGKSSLFRALA   48 (166)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=93.09  E-value=0.067  Score=39.81  Aligned_cols=18  Identities=33%  Similarity=0.420  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        33 ~l~G~nGsGKSTLl~~i~   50 (238)
T cd03249          33 ALVGSSGCGKSTVVSLLE   50 (238)
T ss_pred             EEEeCCCCCHHHHHHHHh
Confidence            999999999999999864

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=93.08  E-value=0.062  Score=39.77  Aligned_cols=18  Identities=28%  Similarity=0.639  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~l~G~nGsGKSTLl~~l~   47 (230)
T TIGR03410        30 CVLGRNGVGKTTLLKTLM   47 (230)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=93.07  E-value=0.064  Score=39.87  Aligned_cols=19  Identities=21%  Similarity=0.247  Sum_probs=17.0

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|.|||||.+.+.
T Consensus        16 ~~l~G~NGsGKSTLlk~i~   34 (213)
T PRK15177         16 IGILAAPGSGKTTLTRLLC   34 (213)
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4799999999999999875

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=93.06  E-value=0.066  Score=38.38  Aligned_cols=18  Identities=22%  Similarity=0.414  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        32 ~i~G~nGsGKStLl~~l~   49 (178)
T cd03247          32 ALLGRSGSGKSTLLQLLT   49 (178)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=93.06  E-value=0.063  Score=40.29  Aligned_cols=18  Identities=28%  Similarity=0.379  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        51 ~i~G~NGsGKSTLl~~i~   68 (236)
T cd03267          51 GFIGPNGAGKTTTLKILS   68 (236)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=93.05  E-value=0.12  Score=44.84  Aligned_cols=44  Identities=18%  Similarity=0.280  Sum_probs=34.8

Q ss_pred             CceeecchhHHHHHHHHhcCCCC--CcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSALNDV--DTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~--~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ..++|.......+.+.+..-...  .+-|+|-.|.|||++|+.+++
T Consensus       376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~  421 (686)
T PRK15429        376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN  421 (686)
T ss_pred             cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHH
Confidence            46999998888888777543222  458889999999999999875

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=93.05  E-value=0.066  Score=39.32  Aligned_cols=18  Identities=33%  Similarity=0.499  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        32 ~i~G~nGsGKSTLl~~l~   49 (207)
T PRK13539         32 VLTGPNGSGKTTLLRLIA   49 (207)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=93.05  E-value=0.065  Score=39.10  Aligned_cols=18  Identities=33%  Similarity=0.409  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        31 ~l~G~nGsGKSTLl~~i~   48 (200)
T PRK13540         31 HLKGSNGAGKTTLLKLIA   48 (200)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999764

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=93.05  E-value=0.063  Score=40.28  Aligned_cols=18  Identities=39%  Similarity=0.444  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+-
T Consensus        37 ~i~G~nGsGKSTLl~~i~   54 (252)
T CHL00131         37 AIMGPNGSGKSTLSKVIA   54 (252)
T ss_pred             EEECCCCCCHHHHHHHHc
Confidence            999999999999999763

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.04  E-value=0.063  Score=40.68  Aligned_cols=18  Identities=33%  Similarity=0.521  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        42 ~l~G~nGsGKSTLl~~l~   59 (259)
T PRK14274         42 AIIGPSGCGKSTFIKTLN   59 (259)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999864

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=93.03  E-value=0.065  Score=39.69  Aligned_cols=18  Identities=33%  Similarity=0.392  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        32 ~i~G~nGsGKSTLl~~l~   49 (234)
T cd03251          32 ALVGPSGSGKSTLVNLIP   49 (234)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=93.03  E-value=0.11  Score=40.72  Aligned_cols=33  Identities=18%  Similarity=0.383  Sum_probs=21.5

Q ss_pred             HHHHHHHHhcCCCC-Cc-ceEecCCCcHHHHHHhh
Q 046733           71 RNKIINRLSALNDV-DT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        71 ~~~lv~~L~~~~~~-~~-~IvGmGGiGKTTLA~~V  103 (106)
                      ...+++.+...... .+ .|+|.+|.|||||+..+
T Consensus        20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l   54 (300)
T TIGR00750        20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEAL   54 (300)
T ss_pred             HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHH
Confidence            44455544322222 23 88999999999998864

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=93.02  E-value=0.064  Score=40.05  Aligned_cols=17  Identities=24%  Similarity=0.446  Sum_probs=16.0

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|..|.|||||.+.+
T Consensus        33 ~l~G~nGsGKSTLl~~l   49 (241)
T PRK10895         33 GLLGPNGAGKTTTFYMV   49 (241)
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            99999999999999976

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.01  E-value=0.066  Score=40.21  Aligned_cols=18  Identities=44%  Similarity=0.519  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        33 ~i~G~nGsGKSTLl~~l~   50 (241)
T PRK14250         33 TIVGPSGAGKSTLIKLIN   50 (241)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=93.00  E-value=0.067  Score=38.90  Aligned_cols=18  Identities=22%  Similarity=0.486  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~i~G~nGsGKSTLl~~l~   47 (198)
T TIGR01189        30 QVTGPNGIGKTTLLRILA   47 (198)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999764

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=92.98  E-value=0.064  Score=39.83  Aligned_cols=18  Identities=33%  Similarity=0.590  Sum_probs=17.0

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||..+++
T Consensus        26 ~i~G~NGsGKTTLl~ai~   43 (204)
T cd03240          26 LIVGQNGAGKTTIIEALK   43 (204)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            899999999999999985

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=92.98  E-value=0.063  Score=39.51  Aligned_cols=18  Identities=39%  Similarity=0.399  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        29 ~l~G~nGsGKSTLl~~l~   46 (177)
T cd03222          29 GIVGPNGTGKTTAVKILA   46 (177)
T ss_pred             EEECCCCChHHHHHHHHH
Confidence            999999999999999764

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=92.97  E-value=0.067  Score=40.12  Aligned_cols=18  Identities=28%  Similarity=0.560  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        35 ~i~G~nGsGKSTLl~~l~   52 (252)
T PRK14239         35 ALIGPSGSGKSTLLRSIN   52 (252)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999874

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=92.95  E-value=0.14  Score=45.14  Aligned_cols=43  Identities=16%  Similarity=0.299  Sum_probs=32.7

Q ss_pred             CceeecchhHHHHHHHHhcCC-----CC---C-cceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALN-----DV---D-TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~-----~~---~-~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..|+|.++.++.|.+.+....     ..   . +-.+|..|+|||+||+.+.
T Consensus       454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la  505 (731)
T TIGR02639       454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLA  505 (731)
T ss_pred             cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHH
Confidence            579999999999988775321     11   1 1677999999999999864

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=92.95  E-value=0.065  Score=40.94  Aligned_cols=18  Identities=33%  Similarity=0.471  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        29 ~i~G~NGsGKSTLlk~L~   46 (246)
T cd03237          29 GILGPNGIGKTTFIKMLA   46 (246)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=92.95  E-value=0.081  Score=46.68  Aligned_cols=42  Identities=21%  Similarity=0.348  Sum_probs=31.4

Q ss_pred             Cceeecch---hHHHHHHHHhcCCCC---------CcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDG---DRNKIINRLSALNDV---------DTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~---~~~~lv~~L~~~~~~---------~~~IvGmGGiGKTTLA~~V  103 (106)
                      ++|-|-|+   +.++|++.|.++..-         .+-+||..|.|||-||++|
T Consensus       304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAv  357 (752)
T KOG0734|consen  304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAV  357 (752)
T ss_pred             ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHh
Confidence            46778874   556678888765421         2377899999999999986

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=92.94  E-value=0.069  Score=39.77  Aligned_cols=18  Identities=39%  Similarity=0.556  Sum_probs=17.1

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.++++
T Consensus        27 ~i~GpNGsGKStll~ai~   44 (243)
T cd03272          27 VVVGRNGSGKSNFFAAIR   44 (243)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            899999999999999986

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=92.94  E-value=0.067  Score=40.52  Aligned_cols=18  Identities=28%  Similarity=0.538  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        34 ~i~G~nGsGKSTLl~~la   51 (258)
T PRK14241         34 AFIGPSGCGKSTVLRTLN   51 (258)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999764

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=92.93  E-value=0.066  Score=41.01  Aligned_cols=18  Identities=33%  Similarity=0.547  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        37 ~i~G~nGsGKSTLl~~l~   54 (269)
T PRK11831         37 AIMGPSGIGKTTLLRLIG   54 (269)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.92  E-value=0.067  Score=40.23  Aligned_cols=18  Identities=22%  Similarity=0.481  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        34 ~l~G~nGsGKSTLl~~l~   51 (253)
T PRK14267         34 ALMGPSGCGKSTLLRTFN   51 (253)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=92.91  E-value=0.07  Score=38.44  Aligned_cols=18  Identities=22%  Similarity=0.429  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~i~G~nGsGKSTLl~~l~   47 (182)
T cd03215          30 GIAGLVGNGQTELAEALF   47 (182)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.90  E-value=0.068  Score=40.79  Aligned_cols=18  Identities=28%  Similarity=0.540  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        51 ~i~G~nGsGKSTLl~~l~   68 (268)
T PRK14248         51 ALIGPSGCGKSTFLRSIN   68 (268)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999863

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=92.87  E-value=0.071  Score=40.74  Aligned_cols=18  Identities=22%  Similarity=0.468  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        34 ~I~G~NGsGKSTLl~~i~   51 (251)
T PRK09544         34 TLLGPNGAGKSTLVRVVL   51 (251)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999875

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=92.87  E-value=0.071  Score=44.32  Aligned_cols=19  Identities=26%  Similarity=0.359  Sum_probs=17.2

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|||..|.|||||++.+.
T Consensus       364 vaIvG~SGsGKSTLl~lL~  382 (529)
T TIGR02868       364 VAILGPSGSGKSTLLMLLT  382 (529)
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4999999999999999874

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=92.87  E-value=0.068  Score=40.80  Aligned_cols=18  Identities=28%  Similarity=0.387  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        41 ~i~G~nGsGKSTLl~~l~   58 (265)
T PRK10575         41 GLIGHNGSGKSTLLKMLG   58 (265)
T ss_pred             EEECCCCCCHHHHHHHHc
Confidence            999999999999999864

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=92.86  E-value=0.075  Score=38.22  Aligned_cols=18  Identities=33%  Similarity=0.477  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        29 ~l~G~nGsGKStLl~~i~   46 (180)
T cd03214          29 GILGPNGAGKSTLLKTLA   46 (180)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=92.86  E-value=0.13  Score=41.53  Aligned_cols=41  Identities=17%  Similarity=0.112  Sum_probs=29.4

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKN  102 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~  102 (106)
                      .++||-++.++++--...+.+.-++-|-||+|+||||-+..
T Consensus        27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~   67 (333)
T KOG0991|consen   27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILC   67 (333)
T ss_pred             HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHH
Confidence            47999998887765544443333447889999999996654

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=92.84  E-value=0.07  Score=40.54  Aligned_cols=18  Identities=22%  Similarity=0.475  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        43 ~i~G~nGsGKSTLl~~l~   60 (260)
T PRK10744         43 AFIGPSGCGKSTLLRTFN   60 (260)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999863

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=92.83  E-value=0.072  Score=40.34  Aligned_cols=18  Identities=28%  Similarity=0.383  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        33 ~l~G~nGsGKSTLl~~l~   50 (254)
T PRK10418         33 ALVGGSGSGKSLTCAAAL   50 (254)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=92.81  E-value=0.071  Score=40.33  Aligned_cols=18  Identities=22%  Similarity=0.364  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        31 ~i~G~nGsGKSTLl~~i~   48 (256)
T TIGR03873        31 GLLGPNGSGKSTLLRLLA   48 (256)
T ss_pred             EEECCCCCCHHHHHHHHc
Confidence            899999999999999863

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=92.81  E-value=0.075  Score=37.99  Aligned_cols=18  Identities=33%  Similarity=0.482  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        32 ~i~G~nGsGKStLl~~l~   49 (173)
T cd03246          32 AIIGPSGSGKSTLARLIL   49 (173)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            899999999999999764

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=92.80  E-value=0.075  Score=37.99  Aligned_cols=18  Identities=33%  Similarity=0.458  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~i~G~nGsGKStLl~~l~   47 (173)
T cd03230          30 GLLGPNGAGKTTLIKIIL   47 (173)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999764

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=92.80  E-value=0.069  Score=44.13  Aligned_cols=18  Identities=22%  Similarity=0.278  Sum_probs=16.3

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus       223 vI~G~~gsGKTTL~~~La  240 (399)
T PRK08099        223 AILGGESSGKSTLVNKLA  240 (399)
T ss_pred             EEEcCCCCCHHHHHHHHH
Confidence            899999999999999753

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.79  E-value=0.072  Score=40.12  Aligned_cols=18  Identities=39%  Similarity=0.623  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        34 ~i~G~nGsGKSTLl~~l~   51 (252)
T PRK14256         34 AIIGPSGCGKSTVLRSIN   51 (252)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999863

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=92.79  E-value=0.071  Score=40.94  Aligned_cols=18  Identities=33%  Similarity=0.499  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        54 ~I~G~nGsGKSTLl~~i~   71 (271)
T PRK14238         54 AIIGPSGCGKSTYIKTLN   71 (271)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999864

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=92.78  E-value=0.072  Score=39.13  Aligned_cols=18  Identities=22%  Similarity=0.379  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        37 ~i~G~nGsGKSTLl~~l~   54 (202)
T cd03233          37 LVLGRPGSGCSTLLKALA   54 (202)
T ss_pred             EEECCCCCCHHHHHHHhc
Confidence            999999999999999763

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=92.78  E-value=0.18  Score=37.24  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=21.0

Q ss_pred             HHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733           72 NKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        72 ~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+.+..++... .++ .|.|.+|.||||+.+.+.
T Consensus         7 ~~a~~~~l~~~-~~~~~l~G~aGtGKT~~l~~~~   39 (196)
T PF13604_consen    7 REAVRAILTSG-DRVSVLQGPAGTGKTTLLKALA   39 (196)
T ss_dssp             HHHHHHHHHCT-CSEEEEEESTTSTHHHHHHHHH
T ss_pred             HHHHHHHHhcC-CeEEEEEECCCCCHHHHHHHHH
Confidence            34444443322 234 677999999999998753

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.77  E-value=0.073  Score=40.11  Aligned_cols=18  Identities=22%  Similarity=0.466  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        36 ~i~G~nGsGKSTLl~~l~   53 (253)
T PRK14261         36 ALIGPSGCGKSTLLRCFN   53 (253)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999874

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=92.76  E-value=0.071  Score=42.07  Aligned_cols=17  Identities=35%  Similarity=0.554  Sum_probs=15.9

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      +|+|..|+|||||-+.|
T Consensus        33 silGpSGcGKSTLLrii   49 (248)
T COG1116          33 AILGPSGCGKSTLLRLI   49 (248)
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            99999999999998875

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=92.75  E-value=0.072  Score=40.76  Aligned_cols=18  Identities=33%  Similarity=0.573  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        31 ~i~G~nGsGKSTLl~~l~   48 (271)
T PRK13638         31 GLVGANGCGKSTLFMNLS   48 (271)
T ss_pred             EEECCCCCCHHHHHHHHc
Confidence            999999999999999864

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=92.74  E-value=0.074  Score=40.83  Aligned_cols=18  Identities=22%  Similarity=0.409  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        37 ~l~G~nGsGKSTLl~~i~   54 (280)
T PRK13649         37 AFIGHTGSGKSTIMQLLN   54 (280)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=92.74  E-value=0.077  Score=39.04  Aligned_cols=18  Identities=39%  Similarity=0.468  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.++
T Consensus        31 ~i~G~nGsGKSTLl~~i~   48 (218)
T cd03290          31 MIVGQVGCGKSSLLLAIL   48 (218)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999875

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.73  E-value=0.074  Score=39.92  Aligned_cols=18  Identities=33%  Similarity=0.615  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        33 ~i~G~nGsGKSTLl~~i~   50 (250)
T PRK14262         33 AIIGPSGCGKTTLLRSIN   50 (250)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999874

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=92.73  E-value=0.079  Score=37.14  Aligned_cols=18  Identities=39%  Similarity=0.446  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~i~G~nGsGKStLl~~l~   47 (144)
T cd03221          30 GLVGRNGAGKSTLLKLIA   47 (144)
T ss_pred             EEECCCCCCHHHHHHHHc
Confidence            899999999999999764

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=92.73  E-value=0.072  Score=42.40  Aligned_cols=18  Identities=39%  Similarity=0.508  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        37 ~ivG~sGsGKSTLl~~i~   54 (330)
T PRK15093         37 GLVGESGSGKSLIAKAIC   54 (330)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999874

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=92.73  E-value=0.074  Score=39.72  Aligned_cols=18  Identities=28%  Similarity=0.405  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        31 ~i~G~nGsGKSTLl~~l~   48 (248)
T PRK09580         31 AIMGPNGSGKSTLSATLA   48 (248)
T ss_pred             EEECCCCCCHHHHHHHHc
Confidence            999999999999999864

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.72  E-value=0.075  Score=39.96  Aligned_cols=18  Identities=22%  Similarity=0.488  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        35 ~l~G~nGsGKSTLl~~l~   52 (252)
T PRK14255         35 ALIGPSGCGKSTYLRTLN   52 (252)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999873

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=92.72  E-value=0.15  Score=45.54  Aligned_cols=42  Identities=17%  Similarity=0.304  Sum_probs=31.6

Q ss_pred             CceeecchhHHHHHHHHhcCC----C-C----CcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALN----D-V----DTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~----~-~----~~~IvGmGGiGKTTLA~~V  103 (106)
                      ..|+|.++.++.|.+.+....    . .    .+-++|..|+|||+||+.+
T Consensus       458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~L  508 (758)
T PRK11034        458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL  508 (758)
T ss_pred             ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHH
Confidence            468999999999988875321    1 1    1256799999999999865

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=92.72  E-value=0.11  Score=46.98  Aligned_cols=42  Identities=24%  Similarity=0.355  Sum_probs=33.3

Q ss_pred             CceeecchhHHHHHHHHhcC----CC-CCc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSAL----ND-VDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~----~~-~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .+-.|.++-+++|++.|.-.    .. ..+ ..+|..|+|||.+|+.|
T Consensus       411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSI  458 (906)
T KOG2004|consen  411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSI  458 (906)
T ss_pred             ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHH
Confidence            47889999999999998422    11 234 78899999999999986

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=92.71  E-value=0.071  Score=39.50  Aligned_cols=18  Identities=33%  Similarity=0.497  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+++.
T Consensus        32 ~i~G~NGsGKSTll~~i~   49 (213)
T cd03279          32 LICGPTGAGKSTILDAIT   49 (213)
T ss_pred             EEECCCCCCHHHHHHHhe
Confidence            999999999999999864

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=92.70  E-value=0.075  Score=40.87  Aligned_cols=18  Identities=28%  Similarity=0.477  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        42 ~I~G~NGsGKSTLlk~l~   59 (257)
T PRK11247         42 AVVGRSGCGKSTLLRLLA   59 (257)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>CHL00176 ftsH cell division protein; Validated

Probab=92.68  E-value=0.086  Score=46.16  Aligned_cols=43  Identities=21%  Similarity=0.258  Sum_probs=29.3

Q ss_pred             CceeecchhHHHHHHH---HhcCCC---------CCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINR---LSALND---------VDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~---L~~~~~---------~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .++.|.++.++.+.+.   |.....         ..+-++|..|.|||+||+.+.
T Consensus       183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA  237 (638)
T CHL00176        183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIA  237 (638)
T ss_pred             HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHH
Confidence            4688988766666444   332211         023778999999999999874

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=92.68  E-value=0.078  Score=38.89  Aligned_cols=18  Identities=33%  Similarity=0.418  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        34 ~i~G~nGsGKSTLl~~i~   51 (220)
T cd03245          34 AIIGRVGSGKSTLLKLLA   51 (220)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=92.67  E-value=0.078  Score=40.70  Aligned_cols=18  Identities=39%  Similarity=0.665  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        54 ~l~G~nGsGKSTLl~~L~   71 (269)
T cd03294          54 VIMGLSGSGKSTLLRCIN   71 (269)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.66  E-value=0.079  Score=40.21  Aligned_cols=18  Identities=33%  Similarity=0.521  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        37 ~l~G~nGsGKSTLlk~l~   54 (259)
T PRK14260         37 AIIGPSGCGKSTFIKTLN   54 (259)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999874

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=92.65  E-value=0.078  Score=39.57  Aligned_cols=18  Identities=22%  Similarity=0.409  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        52 ~i~G~nGsGKSTLl~~l~   69 (224)
T cd03220          52 GLIGRNGAGKSTLLRLLA   69 (224)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999764

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=92.65  E-value=0.077  Score=40.11  Aligned_cols=18  Identities=28%  Similarity=0.460  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        32 ~l~G~nGsGKSTLl~~l~   49 (255)
T PRK11231         32 ALIGPNGCGKSTLLKCFA   49 (255)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=92.65  E-value=0.082  Score=39.03  Aligned_cols=18  Identities=33%  Similarity=0.385  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        44 ~i~G~nGsGKSTLl~~l~   61 (226)
T cd03248          44 ALVGPSGSGKSTVVALLE   61 (226)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=92.64  E-value=0.082  Score=38.48  Aligned_cols=18  Identities=22%  Similarity=0.434  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        37 ~l~G~nGsGKSTLl~~l~   54 (192)
T cd03232          37 ALMGESGAGKTTLLDVLA   54 (192)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=92.64  E-value=0.073  Score=42.39  Aligned_cols=18  Identities=44%  Similarity=0.397  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        37 ~lvG~sGsGKSTL~~~l~   54 (326)
T PRK11022         37 GIVGESGSGKSVSSLAIM   54 (326)
T ss_pred             EEECCCCChHHHHHHHHH
Confidence            999999999999999864

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=92.63  E-value=0.087  Score=37.57  Aligned_cols=16  Identities=31%  Similarity=0.439  Sum_probs=12.3

Q ss_pred             ceEecCCCcHHHHHHh
Q 046733           87 VIVGIGGLGKIVVWKN  102 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~  102 (106)
                      -|.|..|.||||+...
T Consensus        21 ~i~GpPGTGKT~~l~~   36 (236)
T PF13086_consen   21 LIQGPPGTGKTTTLAS   36 (236)
T ss_dssp             EEE-STTSSHHHHHHH
T ss_pred             EEECCCCCChHHHHHH
Confidence            8899999999975543

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=92.61  E-value=0.081  Score=40.49  Aligned_cols=18  Identities=22%  Similarity=0.484  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        50 ~I~G~nGsGKSTLl~~l~   67 (267)
T PRK14237         50 ALIGPSGSGKSTYLRSLN   67 (267)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999875

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=92.61  E-value=0.081  Score=38.91  Aligned_cols=18  Identities=28%  Similarity=0.473  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        25 ~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          25 VVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999998763

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=92.61  E-value=0.079  Score=42.21  Aligned_cols=17  Identities=35%  Similarity=0.429  Sum_probs=16.2

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|||-.|.|||||++.+
T Consensus        43 glVGESG~GKSTlgr~i   59 (268)
T COG4608          43 GLVGESGCGKSTLGRLI   59 (268)
T ss_pred             EEEecCCCCHHHHHHHH
Confidence            99999999999999976

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=92.61  E-value=0.083  Score=39.16  Aligned_cols=18  Identities=33%  Similarity=0.637  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        31 ~l~G~nGsGKSTLl~~i~   48 (236)
T cd03253          31 AIVGPSGSGKSTILRLLF   48 (236)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.59  E-value=0.08  Score=40.61  Aligned_cols=18  Identities=28%  Similarity=0.578  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        43 ~l~G~nGsGKSTLl~~l~   60 (269)
T PRK14259         43 ALIGPSGCGKSTVLRSLN   60 (269)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999874

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=92.59  E-value=0.082  Score=38.82  Aligned_cols=18  Identities=33%  Similarity=0.470  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        34 ~i~G~nGsGKSTLl~~l~   51 (221)
T cd03244          34 GIVGRTGSGKSSLLLALF   51 (221)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999763

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=92.57  E-value=0.085  Score=41.69  Aligned_cols=19  Identities=32%  Similarity=0.326  Sum_probs=17.2

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .|+|..|.|||||-+.+..
T Consensus        32 ~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          32 GILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEECCCCCCHHHHHHHHhc
Confidence            9999999999999998753

>TIGR00767 rho transcription termination factor Rho

Probab=92.57  E-value=0.069  Score=44.89  Aligned_cols=19  Identities=32%  Similarity=0.323  Sum_probs=17.8

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .|||.+|.|||||++.++.
T Consensus       172 ~IvG~~g~GKTtL~~~i~~  190 (415)
T TIGR00767       172 LIVAPPKAGKTVLLQKIAQ  190 (415)
T ss_pred             EEECCCCCChhHHHHHHHH
Confidence            8999999999999999875

Members of this family differ in the specificity of RNA binding.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=92.56  E-value=0.088  Score=37.55  Aligned_cols=18  Identities=39%  Similarity=0.529  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        32 ~l~G~nGsGKstLl~~i~   49 (171)
T cd03228          32 AIVGPSGSGKSTLLKLLL   49 (171)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999874

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=92.56  E-value=0.073  Score=42.21  Aligned_cols=21  Identities=24%  Similarity=0.358  Sum_probs=17.8

Q ss_pred             CcceEecCCCcHHHHHHhhhc
Q 046733           85 DTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ++-|.|..|.|||||++++..
T Consensus       134 ~ilI~G~tGSGKTTll~al~~  154 (299)
T TIGR02782       134 NILVVGGTGSGKTTLANALLA  154 (299)
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            348889999999999998753

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=92.55  E-value=0.16  Score=42.73  Aligned_cols=44  Identities=18%  Similarity=0.277  Sum_probs=35.5

Q ss_pred             CceeecchhHHHHHHHHhcCCCC--CcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSALNDV--DTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~--~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ..++|.....+++.+.+..-...  .+-|.|-.|+||+++|+.++.
T Consensus       187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~  232 (509)
T PRK05022        187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHA  232 (509)
T ss_pred             CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHH
Confidence            46999999998888887653333  347889999999999999875

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=92.55  E-value=0.081  Score=39.20  Aligned_cols=18  Identities=33%  Similarity=0.523  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        37 ~l~G~nGsGKSTLlk~l~   54 (226)
T cd03234          37 AILGSSGSGKTTLLDAIS   54 (226)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.54  E-value=0.083  Score=40.72  Aligned_cols=18  Identities=22%  Similarity=0.433  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        50 ~IiG~nGsGKSTLl~~l~   67 (274)
T PRK14265         50 AFIGPSGCGKSTLLRCFN   67 (274)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999875

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=92.50  E-value=0.083  Score=39.80  Aligned_cols=18  Identities=22%  Similarity=0.516  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~i~G~nGsGKSTLl~~l~   47 (252)
T TIGR03005        30 ALIGPSGSGKSTILRILM   47 (252)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=92.50  E-value=0.083  Score=39.31  Aligned_cols=18  Identities=33%  Similarity=0.453  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        29 ~l~G~nGsGKSTLl~~l~   46 (232)
T PRK10771         29 AILGPSGAGKSTLLNLIA   46 (232)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999763

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=92.49  E-value=0.084  Score=39.65  Aligned_cols=18  Identities=22%  Similarity=0.510  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        33 ~i~G~nGsGKSTLl~~i~   50 (250)
T PRK14240         33 ALIGPSGCGKSTFLRTLN   50 (250)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999874

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=92.49  E-value=0.082  Score=40.90  Aligned_cols=18  Identities=22%  Similarity=0.370  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        41 ~l~G~nGsGKSTLl~~l~   58 (289)
T PRK13645         41 CVIGTTGSGKSTMIQLTN   58 (289)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=92.49  E-value=0.12  Score=37.02  Aligned_cols=20  Identities=25%  Similarity=0.561  Sum_probs=17.1

Q ss_pred             CcceEecCCCcHHHHHHhhh
Q 046733           85 DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++-|+|+.|.|||||...+.
T Consensus        16 ~ililGl~~sGKTtll~~l~   35 (175)
T PF00025_consen   16 KILILGLDGSGKTTLLNRLK   35 (175)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCccchHHHHHHhh
Confidence            34889999999999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=92.49  E-value=0.083  Score=40.36  Aligned_cols=18  Identities=22%  Similarity=0.457  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        40 ~i~G~nGsGKSTLl~~l~   57 (264)
T PRK14243         40 AFIGPSGCGKSTILRCFN   57 (264)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999864

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=92.46  E-value=0.16  Score=43.83  Aligned_cols=42  Identities=14%  Similarity=0.152  Sum_probs=32.9

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .+++|.+..++.|...+...+-... -++|..|.||||+|+.+
T Consensus        14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~L   56 (535)
T PRK08451         14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIF   56 (535)
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHH
Confidence            4699999888888888865543333 57899999999999864

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=92.46  E-value=0.17  Score=39.93  Aligned_cols=19  Identities=32%  Similarity=0.447  Sum_probs=16.9

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|.|||||++.+.
T Consensus       147 ili~G~tGsGKTTll~al~  165 (308)
T TIGR02788       147 IIISGGTGSGKTTFLKSLV  165 (308)
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4899999999999999765

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=92.46  E-value=0.083  Score=40.52  Aligned_cols=18  Identities=33%  Similarity=0.737  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        37 ~l~G~nGsGKSTLl~~l~   54 (272)
T PRK15056         37 ALVGVNGSGKSTLFKALM   54 (272)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.46  E-value=0.085  Score=39.71  Aligned_cols=18  Identities=22%  Similarity=0.468  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+-
T Consensus        34 ~i~G~nGsGKSTLl~~l~   51 (251)
T PRK14270         34 ALIGPSGCGKSTFLRCLN   51 (251)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999763

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=92.45  E-value=0.086  Score=38.52  Aligned_cols=18  Identities=39%  Similarity=0.466  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        28 ~l~G~nGsGKSTLl~~l~   45 (211)
T cd03298          28 AIVGPSGSGKSTLLNLIA   45 (211)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999764

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN02796 D-glycerate 3-kinase

Probab=92.45  E-value=0.083  Score=43.40  Aligned_cols=18  Identities=22%  Similarity=0.154  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|.|..|.|||||++.+.
T Consensus       104 GI~G~sGSGKSTLa~~L~  121 (347)
T PLN02796        104 GISAPQGCGKTTLVFALV  121 (347)
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            899999999999999875

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=92.42  E-value=0.15  Score=40.25  Aligned_cols=17  Identities=24%  Similarity=0.567  Sum_probs=15.8

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .++||.|.||||+++.+
T Consensus       137 ~l~G~~GsGKStvg~~L  153 (309)
T PRK08154        137 ALIGLRGAGKSTLGRML  153 (309)
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            88899999999999986

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.42  E-value=0.09  Score=39.46  Aligned_cols=18  Identities=22%  Similarity=0.490  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        33 ~i~G~nGsGKSTLl~~l~   50 (250)
T PRK14266         33 ALIGPSGCGKSTFIRTLN   50 (250)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            899999999999999874

>cd04154 Arl2 Arl2 subfamily

Probab=92.41  E-value=0.093  Score=36.75  Aligned_cols=20  Identities=25%  Similarity=0.564  Sum_probs=17.3

Q ss_pred             CcceEecCCCcHHHHHHhhh
Q 046733           85 DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++.|+|.+|+|||||...+.
T Consensus        16 kv~ivG~~~~GKTsL~~~l~   35 (173)
T cd04154          16 RILILGLDNAGKTTILKKLL   35 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            56899999999999998753

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=92.39  E-value=0.096  Score=37.05  Aligned_cols=21  Identities=14%  Similarity=0.238  Sum_probs=18.1

Q ss_pred             CcceEecCCCcHHHHHHhhhc
Q 046733           85 DTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ++.|+|..|.|||||...+..
T Consensus        26 ~v~ivG~~~~GKSsli~~l~~   46 (196)
T PRK00454         26 EIAFAGRSNVGKSSLINALTN   46 (196)
T ss_pred             EEEEEcCCCCCHHHHHHHHhC
Confidence            349999999999999998753

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=92.39  E-value=0.085  Score=41.19  Aligned_cols=18  Identities=22%  Similarity=0.337  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        23 ~l~G~NGaGKSTLl~~l~   40 (302)
T TIGR01188        23 GFLGPNGAGKTTTIRMLT   40 (302)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=92.38  E-value=0.15  Score=44.29  Aligned_cols=43  Identities=12%  Similarity=0.061  Sum_probs=31.3

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..|||.+.-+..+.-.+.......+-|.|..|.||||+|+.+-
T Consensus         4 ~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~   46 (633)
T TIGR02442         4 TAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLA   46 (633)
T ss_pred             chhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHH
Confidence            4689988766666544444433345888999999999999863

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=92.38  E-value=0.085  Score=41.28  Aligned_cols=17  Identities=29%  Similarity=0.575  Sum_probs=15.3

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .++|..|+||||++..+
T Consensus       198 ~~vGptGvGKTTt~~kL  214 (282)
T TIGR03499       198 ALVGPTGVGKTTTLAKL  214 (282)
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            88999999999998765

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.38  E-value=0.088  Score=39.54  Aligned_cols=18  Identities=22%  Similarity=0.468  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        34 ~i~G~nGsGKSTLl~~l~   51 (251)
T PRK14251         34 ALIGPSGCGKSTFLRCLN   51 (251)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>PLN02318 phosphoribulokinase/uridine kinase

Probab=92.37  E-value=0.14  Score=45.34  Aligned_cols=18  Identities=28%  Similarity=0.446  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|.|..|.||||||+.+.
T Consensus        69 GIaGpSGSGKTTLAk~La   86 (656)
T PLN02318         69 GVAGPSGAGKTVFTEKVL   86 (656)
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            999999999999999874

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=92.37  E-value=0.095  Score=37.32  Aligned_cols=18  Identities=28%  Similarity=0.455  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~l~G~nGsGKSTLl~~i~   47 (163)
T cd03216          30 ALLGENGAGKSTLMKILS   47 (163)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.36  E-value=0.092  Score=39.52  Aligned_cols=18  Identities=22%  Similarity=0.401  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        35 ~I~G~nGsGKSTLl~~i~   52 (251)
T PRK14244         35 AFIGPSGCGKSTFLRCFN   52 (251)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            899999999999999864

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=92.35  E-value=0.093  Score=38.74  Aligned_cols=18  Identities=22%  Similarity=0.435  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        41 ~i~G~nGsGKSTLl~~i~   58 (214)
T PRK13543         41 LVQGDNGAGKTTLLRVLA   58 (214)
T ss_pred             EEEcCCCCCHHHHHHHHh
Confidence            899999999999999864

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=92.34  E-value=0.12  Score=42.73  Aligned_cols=42  Identities=17%  Similarity=0.268  Sum_probs=34.0

Q ss_pred             CceeecchhHHHHHHHHhcCCC-----CCc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALND-----VDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~-----~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .+++|.++..++|++.+.....     .++ -++|.-|.||||||..+
T Consensus        61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~L  108 (358)
T PF08298_consen   61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELL  108 (358)
T ss_pred             ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHH
Confidence            4799999999999998864322     134 77899999999999875

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.32  E-value=0.09  Score=39.63  Aligned_cols=18  Identities=22%  Similarity=0.510  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        37 ~i~G~nGsGKSTLl~~l~   54 (254)
T PRK14273         37 ALIGPSGCGKSTFLRTLN   54 (254)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=92.32  E-value=0.14  Score=41.36  Aligned_cols=43  Identities=19%  Similarity=0.210  Sum_probs=34.1

Q ss_pred             ceeecchhHHHHHHHHhcCCCC-CcceEecCCCcHHHHHHhhhc
Q 046733           63 FAYGRDGDRNKIINRLSALNDV-DTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        63 ~vvGrd~~~~~lv~~L~~~~~~-~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ..||+|.-.+.+-..++..... ++-|||-.|+|||||...+|.
T Consensus        25 gyvGidtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~   68 (336)
T KOG1547|consen   25 GYVGIDTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFK   68 (336)
T ss_pred             ccccHHHHHHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHH
Confidence            5789988777777767665544 569999999999999987763

>cd01394 radB RadB

Probab=92.31  E-value=0.092  Score=38.54  Aligned_cols=17  Identities=24%  Similarity=0.317  Sum_probs=15.5

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|.+|+||||||..+
T Consensus        23 ~i~G~~GsGKT~l~~~~   39 (218)
T cd01394          23 QVYGPPGTGKTNIAIQL   39 (218)
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            88999999999999865

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=92.31  E-value=0.093  Score=40.15  Aligned_cols=18  Identities=22%  Similarity=0.435  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        49 ~i~G~nGsGKSTLl~~l~   66 (267)
T PRK14235         49 AFIGPSGCGKSTFLRCLN   66 (267)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999874

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=92.27  E-value=0.2  Score=39.00  Aligned_cols=39  Identities=18%  Similarity=0.198  Sum_probs=24.0

Q ss_pred             eecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733           65 YGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        65 vGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      .|...+....+..+......-+-|.|..|.||||+...+
T Consensus        62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~al  100 (264)
T cd01129          62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSA  100 (264)
T ss_pred             cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHH
Confidence            455444444444443322222388899999999999865

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.24  E-value=0.094  Score=39.34  Aligned_cols=18  Identities=22%  Similarity=0.499  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        33 ~i~G~nGsGKSTLl~~l~   50 (249)
T PRK14253         33 ALIGPSGCGKSTLLRCLN   50 (249)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999863

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=92.22  E-value=0.094  Score=39.94  Aligned_cols=18  Identities=28%  Similarity=0.521  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        32 ~i~G~nGsGKSTLl~~i~   49 (258)
T PRK13548         32 AILGPNGAGKSTLLRALS   49 (258)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999874

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=92.20  E-value=0.096  Score=39.38  Aligned_cols=18  Identities=33%  Similarity=0.366  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        33 ~i~G~nGsGKSTLl~~l~   50 (253)
T TIGR02323        33 GIVGESGSGKSTLLGCLA   50 (253)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999764

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=92.20  E-value=0.098  Score=38.19  Aligned_cols=18  Identities=33%  Similarity=0.484  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        38 ~i~G~nGsGKSTLl~~l~   55 (207)
T cd03369          38 GIVGRTGAGKSTLILALF   55 (207)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=92.18  E-value=0.088  Score=45.57  Aligned_cols=17  Identities=29%  Similarity=0.405  Sum_probs=16.2

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|||-.|.||||||+.+
T Consensus       321 glVGeSGsGKSTlar~i  337 (539)
T COG1123         321 GLVGESGSGKSTLARIL  337 (539)
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            99999999999999976

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=92.16  E-value=0.091  Score=42.58  Aligned_cols=19  Identities=37%  Similarity=0.307  Sum_probs=17.0

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      -|+|..|+|||.|++++++
T Consensus       140 ~l~G~~G~GKThL~~ai~~  158 (405)
T TIGR00362       140 FIYGGVGLGKTHLLHAIGN  158 (405)
T ss_pred             EEECCCCCcHHHHHHHHHH
Confidence            6889999999999998764

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=92.13  E-value=0.099  Score=40.38  Aligned_cols=18  Identities=33%  Similarity=0.403  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        37 ~i~G~nGsGKSTLl~~l~   54 (279)
T PRK13650         37 SIIGHNGSGKSTTVRLID   54 (279)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999875

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=92.12  E-value=0.1  Score=38.53  Aligned_cols=17  Identities=35%  Similarity=0.503  Sum_probs=16.0

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|..|.|||||.+.+
T Consensus        33 ~i~G~nGsGKSTLl~~l   49 (229)
T cd03254          33 AIVGPTGAGKTTLINLL   49 (229)
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            99999999999999976

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=92.12  E-value=0.099  Score=40.44  Aligned_cols=18  Identities=33%  Similarity=0.481  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        37 ~I~G~nGaGKSTLl~~l~   54 (282)
T PRK13640         37 ALIGHNGSGKSTISKLIN   54 (282)
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            999999999999999875

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.09  E-value=0.1  Score=39.17  Aligned_cols=18  Identities=28%  Similarity=0.540  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        34 ~i~G~nGsGKSTLl~~i~   51 (252)
T PRK14272         34 ALIGPSGCGKTTFLRAIN   51 (252)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=92.08  E-value=0.11  Score=36.32  Aligned_cols=18  Identities=33%  Similarity=0.529  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        29 ~i~G~nGsGKStll~~l~   46 (157)
T cd00267          29 ALVGPNGSGKSTLLRAIA   46 (157)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999874

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=92.06  E-value=0.1  Score=38.89  Aligned_cols=18  Identities=22%  Similarity=0.547  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        35 ~i~G~nGsGKSTLl~~l~   52 (237)
T PRK11614         35 TLIGANGAGKTTLLGTLC   52 (237)
T ss_pred             EEECCCCCCHHHHHHHHc
Confidence            899999999999999764

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=92.05  E-value=0.1  Score=38.47  Aligned_cols=18  Identities=33%  Similarity=0.433  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~i~G~nGsGKSTLl~~l~   47 (223)
T TIGR03740        30 GLLGPNGAGKSTLLKMIT   47 (223)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999763

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=92.05  E-value=0.1  Score=38.09  Aligned_cols=18  Identities=22%  Similarity=0.396  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~i~G~nGsGKSTLl~~l~   47 (201)
T cd03231          30 QVTGPNGSGKTTLLRILA   47 (201)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999764

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PF13245 AAA_19: Part of AAA domain

Probab=92.04  E-value=0.12  Score=33.25  Aligned_cols=17  Identities=35%  Similarity=0.472  Sum_probs=13.0

Q ss_pred             ceEecCCCcHH-HHHHhh
Q 046733           87 VIVGIGGLGKI-VVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKT-TLA~~V  103 (106)
                      .|.|..|.||| |++..+
T Consensus        14 vv~g~pGtGKT~~~~~~i   31 (76)
T PF13245_consen   14 VVQGPPGTGKTTTLAARI   31 (76)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            56899999999 555443

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=92.04  E-value=0.17  Score=37.28  Aligned_cols=32  Identities=22%  Similarity=0.395  Sum_probs=25.0

Q ss_pred             hhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733           69 GDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        69 ~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy  104 (106)
                      +..+.|.++|..    .+ .++|..|+|||||...+.
T Consensus        24 ~g~~~l~~~l~~----k~~vl~G~SGvGKSSLiN~L~   56 (161)
T PF03193_consen   24 EGIEELKELLKG----KTSVLLGQSGVGKSSLINALL   56 (161)
T ss_dssp             TTHHHHHHHHTT----SEEEEECSTTSSHHHHHHHHH
T ss_pred             cCHHHHHHHhcC----CEEEEECCCCCCHHHHHHHHH
Confidence            557778877754    23 788999999999998764

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK05439 pantothenate kinase; Provisional

Probab=92.02  E-value=0.22  Score=40.14  Aligned_cols=17  Identities=24%  Similarity=0.227  Sum_probs=15.6

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|.|..|+||||||+.+
T Consensus        90 gIaG~~gsGKSTla~~L  106 (311)
T PRK05439         90 GIAGSVAVGKSTTARLL  106 (311)
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            88899999999999875

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=92.02  E-value=0.1  Score=39.95  Aligned_cols=18  Identities=33%  Similarity=0.451  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        39 ~l~G~nGsGKSTLl~~l~   56 (271)
T PRK13632         39 AILGHNGSGKSTISKILT   56 (271)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999764

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=92.00  E-value=0.1  Score=39.96  Aligned_cols=18  Identities=22%  Similarity=0.409  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        42 ~i~G~nGsGKSTLl~~l~   59 (268)
T PRK10419         42 ALLGRSGCGKSTLARLLV   59 (268)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999874

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=91.96  E-value=0.1  Score=39.84  Aligned_cols=18  Identities=39%  Similarity=0.468  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        39 ~I~G~nGsGKSTLl~~i~   56 (269)
T PRK13648         39 SIVGHNGSGKSTIAKLMI   56 (269)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=91.96  E-value=0.096  Score=41.85  Aligned_cols=18  Identities=33%  Similarity=0.276  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        46 ~ivG~sGsGKSTL~~~l~   63 (330)
T PRK09473         46 GIVGESGSGKSQTAFALM   63 (330)
T ss_pred             EEECCCCchHHHHHHHHH
Confidence            999999999999999874

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=91.95  E-value=0.1  Score=41.79  Aligned_cols=18  Identities=28%  Similarity=0.483  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        35 ~iiG~nGsGKSTLlk~L~   52 (343)
T PRK11153         35 GVIGASGAGKSTLIRCIN   52 (343)
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            999999999999999864

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=91.95  E-value=0.1  Score=41.19  Aligned_cols=18  Identities=33%  Similarity=0.590  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        34 ~iiGPNGaGKSTLlK~iL   51 (254)
T COG1121          34 ALIGPNGAGKSTLLKAIL   51 (254)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=91.94  E-value=0.1  Score=39.54  Aligned_cols=18  Identities=22%  Similarity=0.510  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        34 ~i~G~nGsGKSTLl~~i~   51 (262)
T PRK09984         34 ALLGPSGSGKSTLLRHLS   51 (262)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.94  E-value=0.11  Score=39.06  Aligned_cols=18  Identities=22%  Similarity=0.468  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        32 ~i~G~nGsGKSTLl~~l~   49 (246)
T PRK14269         32 ALIGASGCGKSTFLRCFN   49 (246)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=91.91  E-value=0.11  Score=40.30  Aligned_cols=18  Identities=44%  Similarity=0.584  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        37 ~i~G~nGsGKSTLl~~L~   54 (286)
T PRK13646         37 AIVGQTGSGKSTLIQNIN   54 (286)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999875

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=91.90  E-value=0.18  Score=44.31  Aligned_cols=42  Identities=12%  Similarity=0.141  Sum_probs=30.8

Q ss_pred             CceeecchhHHHHHHHHhcCCCC-CcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDV-DTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~-~~~IvGmGGiGKTTLA~~V  103 (106)
                      .+++|.+.-+..|.+.+...+.. .+-+.|..|+||||+|+.+
T Consensus        16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiAril   58 (624)
T PRK14959         16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIF   58 (624)
T ss_pred             HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHH
Confidence            46899887777777777554322 2256899999999999864

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=91.89  E-value=0.1  Score=41.60  Aligned_cols=18  Identities=28%  Similarity=0.423  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        45 ~IvG~sGsGKSTLl~~l~   62 (327)
T PRK11308         45 AVVGESGCGKSTLARLLT   62 (327)
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            999999999999999874

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=91.89  E-value=0.11  Score=39.91  Aligned_cols=18  Identities=22%  Similarity=0.433  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        55 ~I~G~nGsGKSTLl~~la   72 (272)
T PRK14236         55 AFIGPSGCGKSTLLRCFN   72 (272)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999863

>PRK08116 hypothetical protein; Validated

Probab=91.88  E-value=0.1  Score=40.60  Aligned_cols=20  Identities=25%  Similarity=0.165  Sum_probs=17.6

Q ss_pred             cceEecCCCcHHHHHHhhhc
Q 046733           86 TVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +-++|..|+|||.||.+|++
T Consensus       117 l~l~G~~GtGKThLa~aia~  136 (268)
T PRK08116        117 LLLWGSVGTGKTYLAACIAN  136 (268)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            37889999999999998864

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=91.87  E-value=0.11  Score=40.21  Aligned_cols=18  Identities=39%  Similarity=0.425  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        54 ~liG~NGsGKSTLlk~L~   71 (264)
T PRK13546         54 GLVGINGSGKSTLSNIIG   71 (264)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=91.85  E-value=0.33  Score=36.57  Aligned_cols=44  Identities=18%  Similarity=0.224  Sum_probs=26.3

Q ss_pred             Cceeecc-hhHHHHHHHHhcCCCC--C-cceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRD-GDRNKIINRLSALNDV--D-TVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd-~~~~~lv~~L~~~~~~--~-~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .-++|.. +..-..+..+......  + +-|+|..|+|||.|.+++++
T Consensus         9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~   56 (219)
T PF00308_consen    9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN   56 (219)
T ss_dssp             CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH
Confidence            3566653 2233344444443332  2 28889999999999999864

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.84  E-value=0.11  Score=39.40  Aligned_cols=18  Identities=22%  Similarity=0.447  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        42 ~i~G~nGsGKSTLl~~i~   59 (258)
T PRK14268         42 ALIGPSGCGKSTFIRCLN   59 (258)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=91.83  E-value=0.21  Score=43.18  Aligned_cols=18  Identities=28%  Similarity=0.543  Sum_probs=16.2

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      -|+|+.|.||||+|+.+.
T Consensus       396 vl~Gl~GSGKSTia~~La  413 (568)
T PRK05537        396 FFTGLSGAGKSTIAKALM  413 (568)
T ss_pred             EEECCCCChHHHHHHHHH
Confidence            777999999999999874

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=91.81  E-value=0.11  Score=40.04  Aligned_cols=18  Identities=22%  Similarity=0.447  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        35 ~i~G~nGsGKSTLl~~l~   52 (274)
T PRK13647         35 ALLGPNGAGKSTLLLHLN   52 (274)
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            999999999999999864

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=91.81  E-value=0.11  Score=39.65  Aligned_cols=18  Identities=28%  Similarity=0.554  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        37 ~i~G~nGsGKSTLl~~i~   54 (265)
T PRK10253         37 AIIGPNGCGKSTLLRTLS   54 (265)
T ss_pred             EEECCCCCCHHHHHHHHc
Confidence            999999999999999864

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=91.80  E-value=0.11  Score=39.59  Aligned_cols=18  Identities=22%  Similarity=0.366  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        41 ~i~G~nGsGKSTLl~~l~   58 (265)
T TIGR02769        41 GLLGRSGCGKSTLARLLL   58 (265)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999764

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd01878 HflX HflX subfamily

Probab=91.79  E-value=0.12  Score=37.15  Aligned_cols=19  Identities=21%  Similarity=0.441  Sum_probs=16.7

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|.+|+|||||.+.+.
T Consensus        44 I~iiG~~g~GKStLl~~l~   62 (204)
T cd01878          44 VALVGYTNAGKSTLFNALT   62 (204)
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4999999999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=91.75  E-value=0.19  Score=43.76  Aligned_cols=42  Identities=14%  Similarity=0.213  Sum_probs=33.3

Q ss_pred             CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V  103 (106)
                      .+++|.+..++.|...+....-.. +=+.|.-|+||||+|+.+
T Consensus        17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~l   59 (614)
T PRK14971         17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIF   59 (614)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHH
Confidence            469999999999998886654433 267899999999999763

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=91.71  E-value=0.12  Score=38.52  Aligned_cols=18  Identities=39%  Similarity=0.566  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        32 ~l~G~nGsGKSTLl~~l~   49 (242)
T TIGR03411        32 VIIGPNGAGKTTMMDVIT   49 (242)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=91.70  E-value=0.11  Score=46.19  Aligned_cols=18  Identities=39%  Similarity=0.532  Sum_probs=16.8

Q ss_pred             cceEecCCCcHHHHHHhh
Q 046733           86 TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~V  103 (106)
                      +.|||-.|.|||||+|.+
T Consensus       502 vaIvG~SGsGKSTL~KLL  519 (709)
T COG2274         502 VAIVGRSGSGKSTLLKLL  519 (709)
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            499999999999999986

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=91.70  E-value=0.12  Score=39.83  Aligned_cols=18  Identities=33%  Similarity=0.466  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~IvG~nGsGKSTLlk~l~   47 (255)
T cd03236          30 GLVGPNGIGKSTALKILA   47 (255)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.69  E-value=0.12  Score=39.91  Aligned_cols=18  Identities=22%  Similarity=0.446  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        51 ~I~G~nGsGKSTLl~~l~   68 (276)
T PRK14271         51 SLMGPTGSGKTTFLRTLN   68 (276)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.68  E-value=0.12  Score=39.39  Aligned_cols=18  Identities=22%  Similarity=0.435  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        46 ~i~G~nGsGKSTLl~~l~   63 (265)
T PRK14252         46 ALIGPSGCGKSTFLRCFN   63 (265)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.66  E-value=0.12  Score=38.87  Aligned_cols=17  Identities=29%  Similarity=0.608  Sum_probs=16.1

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|..|.|||||.+.+
T Consensus        34 ~i~G~nGsGKSTLl~~l   50 (251)
T PRK14249         34 AIIGPSGCGKSTLLRAL   50 (251)
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            99999999999999976

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=91.65  E-value=0.18  Score=45.40  Aligned_cols=42  Identities=19%  Similarity=0.312  Sum_probs=32.2

Q ss_pred             CceeecchhHHHHHHHHhcCCCC----Cc-----ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDV----DT-----VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~----~~-----~IvGmGGiGKTTLA~~V  103 (106)
                      ..|+|.++.++.+.+-+...+..    +-     --+|+.|+|||-||+.+
T Consensus       491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaL  541 (786)
T COG0542         491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKAL  541 (786)
T ss_pred             cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHH
Confidence            57999999999998887654321    11     33799999999999874

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=91.63  E-value=0.12  Score=37.55  Aligned_cols=18  Identities=33%  Similarity=0.435  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        35 ~i~G~nG~GKSTLl~~i~   52 (204)
T cd03250          35 AIVGPVGSGKSSLLSALL   52 (204)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999764

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=91.63  E-value=0.12  Score=39.52  Aligned_cols=18  Identities=33%  Similarity=0.442  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        43 ~i~G~NGsGKSTLl~~l~   60 (267)
T PRK15112         43 AIIGENGSGKSTLAKMLA   60 (267)
T ss_pred             EEEcCCCCCHHHHHHHHh
Confidence            999999999999999864

>smart00350 MCM minichromosome maintenance proteins

Probab=91.63  E-value=0.21  Score=42.22  Aligned_cols=44  Identities=18%  Similarity=0.201  Sum_probs=31.8

Q ss_pred             CceeecchhHHHHHHHHhcCCC------C------CcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSALND------V------DTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~------~------~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +.++|.+..+..|+-.|.....      .      ++-|+|-.|.|||+||+.+..
T Consensus       203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~  258 (509)
T smart00350      203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEK  258 (509)
T ss_pred             ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHH
Confidence            5788988776666666654321      0      237889999999999998754

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=91.61  E-value=0.12  Score=39.12  Aligned_cols=18  Identities=28%  Similarity=0.433  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        26 ~l~G~nGsGKSTLl~~l~   43 (248)
T PRK03695         26 HLVGPNGAGKSTLLARMA   43 (248)
T ss_pred             EEECCCCCCHHHHHHHHc
Confidence            999999999999999763

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=91.61  E-value=0.12  Score=40.05  Aligned_cols=18  Identities=28%  Similarity=0.506  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        31 ~l~G~nGsGKSTLl~~la   48 (272)
T PRK13547         31 ALLGRNGAGKSTLLKALA   48 (272)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=91.58  E-value=0.19  Score=42.77  Aligned_cols=44  Identities=16%  Similarity=0.091  Sum_probs=28.9

Q ss_pred             CceeecchhHHHHHHHHhcCC------------CCCcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSALN------------DVDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~------------~~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .+|.|..+.++-|.+-+.-+-            +..+-.+|..|.|||-||++|+.
T Consensus       212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvAT  267 (491)
T KOG0738|consen  212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVAT  267 (491)
T ss_pred             HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHH
Confidence            356677666665554432211            11236779999999999999975

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=91.57  E-value=0.13  Score=38.03  Aligned_cols=18  Identities=28%  Similarity=0.412  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        35 ~I~G~nGsGKStLl~~l~   52 (220)
T TIGR02982        35 ILTGPSGSGKTTLLTLIG   52 (220)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=91.57  E-value=0.12  Score=39.69  Aligned_cols=18  Identities=22%  Similarity=0.494  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        32 ~l~G~nGsGKSTLl~~i~   49 (275)
T PRK13639         32 ALLGPNGAGKSTLFLHFN   49 (275)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999874

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=91.56  E-value=0.25  Score=40.31  Aligned_cols=44  Identities=18%  Similarity=0.216  Sum_probs=32.7

Q ss_pred             CceeecchhHHHHHHHHhcCCCC--CcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSALNDV--DTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~--~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ..++|.......+...+......  .+-|.|-.|.||+++|+.++.
T Consensus       138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~  183 (469)
T PRK10923        138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR  183 (469)
T ss_pred             ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHh
Confidence            35888887777777666432222  348889999999999999875

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=91.56  E-value=0.36  Score=39.35  Aligned_cols=32  Identities=19%  Similarity=0.205  Sum_probs=22.8

Q ss_pred             hHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733           70 DRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        70 ~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      ....++..|...  ..+-|.|..|+||||||+.+
T Consensus        53 ~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~l   84 (327)
T TIGR01650        53 TTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQI   84 (327)
T ss_pred             HHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHH
Confidence            344566655432  23588999999999999976

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=91.56  E-value=0.12  Score=43.47  Aligned_cols=19  Identities=26%  Similarity=0.380  Sum_probs=17.1

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|.|||||++.+.
T Consensus       372 ~aIvG~sGsGKSTLl~ll~  390 (582)
T PRK11176        372 VALVGRSGSGKSTIANLLT  390 (582)
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3999999999999999864

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=91.55  E-value=0.13  Score=37.98  Aligned_cols=18  Identities=28%  Similarity=0.294  Sum_probs=16.3

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||+||..+.
T Consensus        23 ~i~G~~GsGKT~l~~~l~   40 (235)
T cd01123          23 EIFGEFGSGKTQLCHQLA   40 (235)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999998763

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=91.54  E-value=0.12  Score=43.39  Aligned_cols=20  Identities=35%  Similarity=0.431  Sum_probs=17.6

Q ss_pred             cceEecCCCcHHHHHHhhhc
Q 046733           86 TVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +.|||..|.|||||++.+.-
T Consensus       358 vaiVG~sGsGKSTl~~LL~r  377 (567)
T COG1132         358 VAIVGPSGSGKSTLIKLLLR  377 (567)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            49999999999999998753

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.51  E-value=0.12  Score=40.05  Aligned_cols=18  Identities=33%  Similarity=0.540  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        69 ~l~G~nGsGKSTLl~~L~   86 (286)
T PRK14275         69 AIIGPSGCGKSTFLRAIN   86 (286)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999874

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=91.50  E-value=0.17  Score=45.41  Aligned_cols=43  Identities=16%  Similarity=0.239  Sum_probs=33.1

Q ss_pred             CceeecchhHHHHHHHHhcCCC-----C---C-cceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALND-----V---D-TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~-----~---~-~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++|.+..++.|...+.....     .   . +-++|..|+|||+||+.+-
T Consensus       565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La  616 (852)
T TIGR03346       565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALA  616 (852)
T ss_pred             cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence            4699999999999888864321     1   1 2678999999999999763

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=91.50  E-value=0.12  Score=40.29  Aligned_cols=18  Identities=22%  Similarity=0.407  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        34 ~l~G~NGaGKSTLl~~l~   51 (303)
T TIGR01288        34 GLLGPNGAGKSTIARMLL   51 (303)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=91.48  E-value=0.11  Score=46.64  Aligned_cols=42  Identities=26%  Similarity=0.395  Sum_probs=29.9

Q ss_pred             CceeecchhHHHHHHH---HhcCCC---C------CcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINR---LSALND---V------DTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~---L~~~~~---~------~~~IvGmGGiGKTTLA~~V  103 (106)
                      .+|-|.|+.+++|++.   |.++..   .      .+-++|..|.|||-||+++
T Consensus       311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAi  364 (774)
T KOG0731|consen  311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAI  364 (774)
T ss_pred             ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHH
Confidence            3688998777766554   444321   1      1278899999999999987

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=91.47  E-value=0.13  Score=39.68  Aligned_cols=18  Identities=22%  Similarity=0.612  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        34 ~i~G~NGsGKSTLl~~l~   51 (277)
T PRK13652         34 AVIGPNGAGKSTLFRHFN   51 (277)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.46  E-value=0.13  Score=39.11  Aligned_cols=18  Identities=33%  Similarity=0.499  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        37 ~I~G~nGsGKSTLl~~l~   54 (261)
T PRK14258         37 AIIGPSGCGKSTFLKCLN   54 (261)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>PRK10865 protein disaggregation chaperone; Provisional

Probab=91.45  E-value=0.24  Score=44.57  Aligned_cols=43  Identities=16%  Similarity=0.271  Sum_probs=32.5

Q ss_pred             CceeecchhHHHHHHHHhcCC------CC--C-cceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALN------DV--D-TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~------~~--~-~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++|.+..++.|...+....      ..  . +-++|..|+|||+||+.+.
T Consensus       568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa  619 (857)
T PRK10865        568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALA  619 (857)
T ss_pred             CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHH
Confidence            469999999888888775321      11  1 2678999999999999875

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=91.44  E-value=0.12  Score=41.69  Aligned_cols=18  Identities=22%  Similarity=0.466  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        35 gIiG~sGaGKSTLlr~I~   52 (343)
T TIGR02314        35 GVIGASGAGKSTLIRCVN   52 (343)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=91.43  E-value=0.13  Score=40.29  Aligned_cols=18  Identities=33%  Similarity=0.394  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        67 ~liG~NGsGKSTLl~~I~   84 (282)
T cd03291          67 AITGSTGSGKTSLLMLIL   84 (282)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999875

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=91.38  E-value=0.13  Score=39.81  Aligned_cols=18  Identities=28%  Similarity=0.468  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        37 ~iiG~NGaGKSTLl~~l~   54 (287)
T PRK13641         37 ALVGHTGSGKSTLMQHFN   54 (287)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999875

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=91.38  E-value=0.12  Score=43.17  Aligned_cols=19  Identities=21%  Similarity=0.282  Sum_probs=17.0

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      -|+|..|+|||+|++++.+
T Consensus       145 ~L~G~~G~GKTHLl~Ai~~  163 (445)
T PRK12422        145 YLFGPEGSGKTHLMQAAVH  163 (445)
T ss_pred             EEEcCCCCCHHHHHHHHHH
Confidence            7899999999999998754

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=91.35  E-value=0.13  Score=41.17  Aligned_cols=18  Identities=33%  Similarity=0.423  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        51 ~lvG~sGsGKSTLlk~i~   68 (331)
T PRK15079         51 GVVGESGCGKSTFARAII   68 (331)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999874

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=91.34  E-value=0.26  Score=42.31  Aligned_cols=44  Identities=14%  Similarity=0.140  Sum_probs=34.3

Q ss_pred             CceeecchhHHHHHHHHhcCCCC--CcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSALNDV--DTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~--~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +.++|......++++.+..-...  .+-|.|-.|.||+++|+.++.
T Consensus       325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~  370 (638)
T PRK11388        325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHN  370 (638)
T ss_pred             cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHH
Confidence            46889988888888877543322  347889999999999999874

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=91.34  E-value=0.13  Score=41.23  Aligned_cols=18  Identities=33%  Similarity=0.446  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        27 ~l~G~nGsGKSTLl~~ia   44 (354)
T TIGR02142        27 AIFGRSGSGKTTLIRLIA   44 (354)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=91.30  E-value=0.13  Score=42.84  Aligned_cols=20  Identities=35%  Similarity=0.305  Sum_probs=17.5

Q ss_pred             cceEecCCCcHHHHHHhhhc
Q 046733           86 TVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +-|+|..|+|||.|++++.+
T Consensus       133 l~lyG~~G~GKTHLl~ai~~  152 (440)
T PRK14088        133 LFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_pred             EEEEcCCCCcHHHHHHHHHH
Confidence            37889999999999998764

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=91.29  E-value=0.14  Score=39.81  Aligned_cols=18  Identities=33%  Similarity=0.411  Sum_probs=16.2

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|+|||||-..+.
T Consensus        35 aI~GpSGSGKSTLLniig   52 (226)
T COG1136          35 AIVGPSGSGKSTLLNLLG   52 (226)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999987654

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=91.27  E-value=0.14  Score=40.47  Aligned_cols=18  Identities=28%  Similarity=0.494  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        37 ~iiG~nGsGKSTLl~~L~   54 (305)
T PRK13651         37 AIIGQTGSGKTTFIEHLN   54 (305)
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            999999999999999864

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=91.27  E-value=0.13  Score=41.28  Aligned_cols=18  Identities=33%  Similarity=0.464  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        28 ~l~G~nGsGKSTLl~~ia   45 (352)
T PRK11144         28 AIFGRSGAGKTSLINAIS   45 (352)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=91.25  E-value=0.13  Score=43.07  Aligned_cols=18  Identities=39%  Similarity=0.477  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        39 ~iiG~nGsGKSTLl~~i~   56 (529)
T PRK15134         39 ALVGESGSGKSVTALSIL   56 (529)
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            999999999999998763

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=91.24  E-value=0.14  Score=39.61  Aligned_cols=18  Identities=33%  Similarity=0.628  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        36 ~i~G~nGaGKSTLl~~i~   53 (283)
T PRK13636         36 AILGGNGAGKSTLFQNLN   53 (283)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999875

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=91.18  E-value=0.14  Score=39.77  Aligned_cols=18  Identities=22%  Similarity=0.501  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        36 ~i~G~nGsGKSTLl~~l~   53 (288)
T PRK13643         36 ALIGHTGSGKSTLLQHLN   53 (288)
T ss_pred             EEECCCCChHHHHHHHHh
Confidence            999999999999999864

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=91.17  E-value=0.14  Score=38.81  Aligned_cols=19  Identities=32%  Similarity=0.501  Sum_probs=17.3

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .|+|..|.|||||..+|+.
T Consensus        26 ~i~G~NGsGKStll~ai~~   44 (247)
T cd03275          26 CIIGPNGSGKSNLMDAISF   44 (247)
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            8999999999999998763

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=91.13  E-value=0.18  Score=35.92  Aligned_cols=17  Identities=29%  Similarity=0.425  Sum_probs=15.2

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|.+|+||||++..+
T Consensus        36 ~i~g~~g~GKT~~~~~l   52 (193)
T PF13481_consen   36 LIAGPPGSGKTTLALQL   52 (193)
T ss_dssp             EEEECSTSSHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHH
Confidence            88899999999998764

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=91.12  E-value=0.14  Score=40.96  Aligned_cols=18  Identities=22%  Similarity=0.333  Sum_probs=16.1

Q ss_pred             cceEecCCCcHHHHHHhh
Q 046733           86 TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~V  103 (106)
                      +.|+|..|.|||||++.+
T Consensus       165 ~~~~G~~~~gkstl~~~l  182 (325)
T TIGR01526       165 VAILGGESTGKSTLVNKL  182 (325)
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            388999999999999975

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=91.10  E-value=0.15  Score=39.65  Aligned_cols=18  Identities=22%  Similarity=0.418  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        37 ~i~G~nGaGKSTLl~~l~   54 (287)
T PRK13637         37 GLIGHTGSGKSTLIQHLN   54 (287)
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            999999999999999864

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=91.09  E-value=0.15  Score=39.29  Aligned_cols=18  Identities=28%  Similarity=0.370  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        32 ~i~G~nGsGKSTLl~~l~   49 (274)
T PRK13644         32 GIIGKNGSGKSTLALHLN   49 (274)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999875

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.05  E-value=0.15  Score=39.99  Aligned_cols=18  Identities=22%  Similarity=0.468  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        75 ~IvG~nGsGKSTLl~~L~   92 (305)
T PRK14264         75 ALIGPSGCGKSTFLRCLN   92 (305)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999874

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=91.02  E-value=0.15  Score=37.14  Aligned_cols=18  Identities=28%  Similarity=0.477  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        39 ~l~G~nGsGKStLl~~i~   56 (194)
T cd03213          39 AIMGPSGAGKSTLLNALA   56 (194)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999763

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=91.00  E-value=0.15  Score=40.54  Aligned_cols=18  Identities=28%  Similarity=0.446  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        56 ~I~G~nGsGKSTLl~~L~   73 (320)
T PRK13631         56 FIIGNSGSGKSTLVTHFN   73 (320)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999875

>PLN02348 phosphoribulokinase

Probab=90.99  E-value=0.24  Score=41.44  Aligned_cols=18  Identities=17%  Similarity=0.239  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|.|..|.||||||+.+.
T Consensus        53 GIaG~SGSGKSTfA~~L~   70 (395)
T PLN02348         53 GLAADSGCGKSTFMRRLT   70 (395)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            899999999999999764

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=90.98  E-value=0.19  Score=40.34  Aligned_cols=17  Identities=24%  Similarity=0.319  Sum_probs=15.4

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|..|.|||||...+
T Consensus       108 ~l~G~pGsGKTTLl~~l  124 (290)
T PRK10463        108 NLVSSPGSGKTTLLTET  124 (290)
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            89999999999999754

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=90.98  E-value=0.15  Score=42.20  Aligned_cols=18  Identities=28%  Similarity=0.455  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        33 ~liG~nGsGKSTLl~~l~   50 (490)
T PRK10938         33 AFVGANGSGKSALARALA   50 (490)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=90.97  E-value=0.16  Score=37.20  Aligned_cols=18  Identities=33%  Similarity=0.503  Sum_probs=16.3

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~i~G~nGsGKStLl~~l~   47 (200)
T cd03217          30 ALMGPNGSGKSTLAKTIM   47 (200)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999753

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=90.95  E-value=0.15  Score=42.59  Aligned_cols=18  Identities=33%  Similarity=0.447  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~iiG~nGsGKSTLl~~l~   47 (520)
T TIGR03269        30 GILGRSGAGKSVLMHVLR   47 (520)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=90.93  E-value=0.21  Score=43.87  Aligned_cols=41  Identities=17%  Similarity=0.242  Sum_probs=31.3

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++.|...+....  .+-++|..|.||||||+.+.
T Consensus        31 ~~vigq~~a~~~L~~~~~~~~--~~l~~G~~G~GKttla~~l~   71 (637)
T PRK13765         31 DQVIGQEHAVEVIKKAAKQRR--HVMMIGSPGTGKSMLAKAMA   71 (637)
T ss_pred             HHcCChHHHHHHHHHHHHhCC--eEEEECCCCCcHHHHHHHHH
Confidence            468898888887776555432  34888999999999998753

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=90.93  E-value=0.24  Score=35.09  Aligned_cols=19  Identities=21%  Similarity=0.504  Sum_probs=16.5

Q ss_pred             CcceEecCCCcHHHHHHhh
Q 046733           85 DTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~V  103 (106)
                      ++.++|.+|+|||+|...+
T Consensus        15 ki~l~G~~~~GKTsL~~~~   33 (175)
T smart00177       15 RILMVGLDAAGKTTILYKL   33 (175)
T ss_pred             EEEEEcCCCCCHHHHHHHH
Confidence            3489999999999998765

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=90.92  E-value=0.16  Score=37.78  Aligned_cols=17  Identities=29%  Similarity=0.393  Sum_probs=15.8

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|..|.|||||.+.+
T Consensus        29 ~ltGpNg~GKSTllr~i   45 (199)
T cd03283          29 LITGSNMSGKSTFLRTI   45 (199)
T ss_pred             EEECCCCCChHHHHHHH
Confidence            89999999999999875

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=90.92  E-value=0.15  Score=42.26  Aligned_cols=18  Identities=28%  Similarity=0.359  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        31 ~liG~nGsGKSTLl~~i~   48 (500)
T TIGR02633        31 GLCGENGAGKSTLMKILS   48 (500)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999874

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=90.91  E-value=0.15  Score=41.35  Aligned_cols=18  Identities=39%  Similarity=0.532  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        33 ~l~G~nGsGKSTLL~~ia   50 (369)
T PRK11000         33 VFVGPSGCGKSTLLRMIA   50 (369)
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            999999999999999864

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=90.91  E-value=0.16  Score=38.07  Aligned_cols=18  Identities=28%  Similarity=0.453  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~l~G~nGsGKSTLl~~i~   47 (237)
T TIGR00968        30 ALLGPSGSGKSTLLRIIA   47 (237)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999764

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=90.89  E-value=0.15  Score=42.40  Aligned_cols=18  Identities=33%  Similarity=0.492  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        34 ~l~G~NGsGKSTLl~~l~   51 (501)
T PRK10762         34 ALVGENGAGKSTMMKVLT   51 (501)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=90.89  E-value=0.16  Score=43.79  Aligned_cols=19  Identities=32%  Similarity=0.492  Sum_probs=17.1

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|||..|.|||||++.+.
T Consensus       482 vaIvG~sGsGKSTLlklL~  500 (686)
T TIGR03797       482 VAIVGPSGSGKSTLLRLLL  500 (686)
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4999999999999999864

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=90.89  E-value=0.17  Score=37.75  Aligned_cols=18  Identities=28%  Similarity=0.481  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~i~G~nGsGKSTLl~~l~   47 (232)
T cd03300          30 TLLGPSGCGKTTLLRLIA   47 (232)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999875

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=90.87  E-value=0.25  Score=43.04  Aligned_cols=33  Identities=21%  Similarity=0.436  Sum_probs=23.7

Q ss_pred             HHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733           71 RNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        71 ~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      +.+|++.|......++ -|.|++|.|||||+...
T Consensus        19 R~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~   52 (903)
T PRK04841         19 RERLLAKLSGANNYRLVLVTSPAGYGKTTLISQW   52 (903)
T ss_pred             chHHHHHHhcccCCCeEEEECCCCCCHHHHHHHH
Confidence            3466666654333455 88899999999999764

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=90.86  E-value=0.32  Score=39.57  Aligned_cols=20  Identities=25%  Similarity=0.358  Sum_probs=17.3

Q ss_pred             cceEecCCCcHHHHHHhhhc
Q 046733           86 TVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +-|.|..|.|||||++.+..
T Consensus       165 ilI~G~tGSGKTTll~aLl~  184 (344)
T PRK13851        165 MLLCGPTGSGKTTMSKTLIS  184 (344)
T ss_pred             EEEECCCCccHHHHHHHHHc
Confidence            48889999999999998754

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.85  E-value=0.16  Score=39.52  Aligned_cols=18  Identities=28%  Similarity=0.484  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        69 ~I~G~nGsGKSTLl~~l~   86 (285)
T PRK14254         69 AMIGPSGCGKSTFLRCIN   86 (285)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=90.83  E-value=0.16  Score=40.81  Aligned_cols=17  Identities=29%  Similarity=0.720  Sum_probs=15.5

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .++|..|.||||++..+
T Consensus       118 ~lvGpnGsGKTTt~~kL  134 (318)
T PRK10416        118 LVVGVNGVGKTTTIGKL  134 (318)
T ss_pred             EEECCCCCcHHHHHHHH
Confidence            88999999999999875

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=90.81  E-value=0.16  Score=42.60  Aligned_cols=18  Identities=28%  Similarity=0.375  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        31 ~liG~NGsGKSTLl~~l~   48 (530)
T PRK15064         31 GLIGANGCGKSTFMKILG   48 (530)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999874

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=90.76  E-value=0.29  Score=41.47  Aligned_cols=43  Identities=14%  Similarity=0.091  Sum_probs=32.9

Q ss_pred             ceeecchhHHHHHHHHhcCCC--CCcceEecCCCcHHHHHHhhhc
Q 046733           63 FAYGRDGDRNKIINRLSALND--VDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        63 ~vvGrd~~~~~lv~~L~~~~~--~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .++|......++++.+..-..  ..+-|+|-.|.||++||+.++.
T Consensus       205 ~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~  249 (520)
T PRK10820        205 QIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL  249 (520)
T ss_pred             ceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence            688888877888777743222  2348889999999999999864

>CHL00095 clpC Clp protease ATP binding subunit

Probab=90.71  E-value=0.23  Score=44.37  Aligned_cols=42  Identities=19%  Similarity=0.210  Sum_probs=31.6

Q ss_pred             CceeecchhHHHHHHHHhcCCC-----C-Cc---ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALND-----V-DT---VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~-----~-~~---~IvGmGGiGKTTLA~~V  103 (106)
                      ..|+|.++.++.|.+.+.....     . .+   -.+|..|+|||+||+.+
T Consensus       509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~L  559 (821)
T CHL00095        509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKAL  559 (821)
T ss_pred             CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHH
Confidence            4799999999999887753221     1 11   57799999999999864

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=90.70  E-value=0.16  Score=41.96  Aligned_cols=19  Identities=37%  Similarity=0.307  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      -|+|..|+|||+|++++.+
T Consensus       152 ~l~G~~G~GKThL~~ai~~  170 (450)
T PRK00149        152 FIYGGVGLGKTHLLHAIGN  170 (450)
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            7789999999999998753

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=90.69  E-value=0.17  Score=37.31  Aligned_cols=18  Identities=17%  Similarity=0.283  Sum_probs=16.0

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .++|.-|.|||||.+.+.
T Consensus        26 ~~~G~~gsGKTTli~~l~   43 (207)
T TIGR00073        26 NFMSSPGSGKTTLIEKLI   43 (207)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            899999999999988753

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=90.68  E-value=0.17  Score=39.13  Aligned_cols=18  Identities=39%  Similarity=0.457  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        37 ~i~G~nGaGKSTLl~~i~   54 (279)
T PRK13635         37 AIVGHNGSGKSTLAKLLN   54 (279)
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            999999999999999874

>cd01855 YqeH YqeH

Probab=90.68  E-value=0.32  Score=35.02  Aligned_cols=34  Identities=24%  Similarity=0.418  Sum_probs=22.4

Q ss_pred             HHHHHHHHhcC--CCCCcceEecCCCcHHHHHHhhh
Q 046733           71 RNKIINRLSAL--NDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        71 ~~~lv~~L~~~--~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +++|++.|...  ....+.++|+.|+|||||...+.
T Consensus       113 i~eL~~~l~~~l~~~~~~~~~G~~nvGKStliN~l~  148 (190)
T cd01855         113 VEELINAIKKLAKKGGDVYVVGATNVGKSTLINALL  148 (190)
T ss_pred             HHHHHHHHHHHhhcCCcEEEEcCCCCCHHHHHHHHH
Confidence            45555544331  11234899999999999988764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.61  E-value=0.17  Score=38.68  Aligned_cols=18  Identities=28%  Similarity=0.482  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        38 ~i~G~nGsGKSTLl~~l~   55 (261)
T PRK14263         38 GFIGPSGCGKSTVLRSLN   55 (261)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999763

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=90.61  E-value=0.17  Score=42.57  Aligned_cols=19  Identities=26%  Similarity=0.494  Sum_probs=17.2

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|||..|.|||||++.+.
T Consensus       379 vaIvG~SGsGKSTL~~lL~  397 (588)
T PRK11174        379 IALVGPSGAGKTSLLNALL  397 (588)
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            3999999999999999864

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=90.61  E-value=0.18  Score=38.90  Aligned_cols=18  Identities=33%  Similarity=0.390  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        37 ~I~G~nGsGKSTLl~~l~   54 (277)
T PRK13642         37 SIIGQNGSGKSTTARLID   54 (277)
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            999999999999999864

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=90.61  E-value=0.18  Score=37.76  Aligned_cols=18  Identities=44%  Similarity=0.604  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        29 ~i~G~nG~GKStLl~~l~   46 (235)
T cd03299          29 VILGPTGSGKSVLLETIA   46 (235)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999763

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=90.60  E-value=0.17  Score=39.30  Aligned_cols=18  Identities=28%  Similarity=0.523  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        37 ~i~G~nGsGKSTLl~~l~   54 (290)
T PRK13634         37 AIIGHTGSGKSTLLQHLN   54 (290)
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            999999999999999864

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=90.58  E-value=0.16  Score=42.22  Aligned_cols=18  Identities=22%  Similarity=0.481  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       292 ~l~G~NGsGKSTLlk~i~  309 (506)
T PRK13549        292 GIAGLVGAGRTELVQCLF  309 (506)
T ss_pred             EEeCCCCCCHHHHHHHHh
Confidence            899999999999999875

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=90.57  E-value=0.17  Score=42.18  Aligned_cols=17  Identities=29%  Similarity=0.575  Sum_probs=14.8

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .++|.+|+||||++..+
T Consensus       225 ~~vGptGvGKTTt~~kL  241 (424)
T PRK05703        225 ALVGPTGVGKTTTLAKL  241 (424)
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            88999999999987654

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=90.55  E-value=0.17  Score=42.18  Aligned_cols=18  Identities=28%  Similarity=0.412  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        35 ~l~G~nGsGKSTLl~~l~   52 (506)
T PRK13549         35 SLCGENGAGKSTLMKVLS   52 (506)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=90.53  E-value=0.33  Score=39.40  Aligned_cols=33  Identities=18%  Similarity=0.340  Sum_probs=21.9

Q ss_pred             HHHHHHHHhcCCCC--CcceEecCCCcHHHHHHhh
Q 046733           71 RNKIINRLSALNDV--DTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        71 ~~~lv~~L~~~~~~--~~~IvGmGGiGKTTLA~~V  103 (106)
                      ...|++.+......  .+.|.|..|.|||||...+
T Consensus        42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l   76 (332)
T PRK09435         42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEAL   76 (332)
T ss_pred             HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHH
Confidence            34555555332222  2399999999999999864

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=90.52  E-value=0.18  Score=39.53  Aligned_cols=17  Identities=29%  Similarity=0.692  Sum_probs=14.7

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .++|.+|+||||++..+
T Consensus        76 ~l~G~~G~GKTTt~akL   92 (272)
T TIGR00064        76 LFVGVNGVGKTTTIAKL   92 (272)
T ss_pred             EEECCCCCcHHHHHHHH
Confidence            78899999999987654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=90.50  E-value=0.18  Score=39.35  Aligned_cols=18  Identities=22%  Similarity=0.350  Sum_probs=16.9

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.++
T Consensus        34 ~IvG~nGsGKSTLl~~L~   51 (275)
T cd03289          34 GLLGRTGSGKSTLLSAFL   51 (275)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999875

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=90.49  E-value=0.17  Score=42.85  Aligned_cols=17  Identities=24%  Similarity=0.563  Sum_probs=15.8

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .++|.+|+||||++.++
T Consensus       245 ~LVGptGvGKTTTiaKL  261 (436)
T PRK11889        245 ALIGPTGVGKTTTLAKM  261 (436)
T ss_pred             EEECCCCCcHHHHHHHH
Confidence            89999999999999876

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=90.49  E-value=0.22  Score=36.55  Aligned_cols=18  Identities=28%  Similarity=0.346  Sum_probs=16.2

Q ss_pred             cceEecCCCcHHHHHHhh
Q 046733           86 TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~V  103 (106)
                      +-+.|..|+|||.||.++
T Consensus        50 l~l~G~~G~GKThLa~ai   67 (178)
T PF01695_consen   50 LILYGPPGTGKTHLAVAI   67 (178)
T ss_dssp             EEEEESTTSSHHHHHHHH
T ss_pred             EEEEhhHhHHHHHHHHHH
Confidence            488899999999999876

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=90.46  E-value=0.18  Score=42.22  Aligned_cols=18  Identities=33%  Similarity=0.438  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        41 ~liG~NGsGKSTLl~~l~   58 (510)
T PRK15439         41 ALLGGNGAGKSTLMKIIA   58 (510)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=90.43  E-value=0.17  Score=41.92  Aligned_cols=18  Identities=17%  Similarity=0.381  Sum_probs=16.9

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.++
T Consensus       278 ~l~G~nGsGKSTLl~~l~  295 (491)
T PRK10982        278 GIAGLVGAKRTDIVETLF  295 (491)
T ss_pred             EEecCCCCCHHHHHHHHc
Confidence            999999999999999875

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=90.42  E-value=0.17  Score=41.57  Aligned_cols=17  Identities=29%  Similarity=0.567  Sum_probs=15.8

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      ++.|..|+|||||-+.|
T Consensus        35 ~lLGPSGcGKTTlLR~I   51 (352)
T COG3842          35 TLLGPSGCGKTTLLRMI   51 (352)
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            89999999999999876

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=90.41  E-value=0.18  Score=42.28  Aligned_cols=18  Identities=28%  Similarity=0.650  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       349 ~l~G~NGsGKSTLl~~i~  366 (530)
T PRK15064        349 AIIGENGVGKTTLLRTLV  366 (530)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999875

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=90.38  E-value=0.17  Score=43.51  Aligned_cols=18  Identities=39%  Similarity=0.451  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        46 ~lvG~nGsGKSTLl~~l~   63 (623)
T PRK10261         46 AIVGESGSGKSVTALALM   63 (623)
T ss_pred             EEECCCCChHHHHHHHHH
Confidence            999999999999999874

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=90.38  E-value=0.19  Score=37.17  Aligned_cols=18  Identities=28%  Similarity=0.309  Sum_probs=16.0

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      -|+|.+|.|||+||..+.
T Consensus        27 ~i~G~~GsGKT~l~~~la   44 (225)
T PRK09361         27 QIYGPPGSGKTNICLQLA   44 (225)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            899999999999998753

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=90.36  E-value=0.17  Score=43.74  Aligned_cols=19  Identities=42%  Similarity=0.562  Sum_probs=17.1

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|.|||||++.+.
T Consensus       503 vaIvG~SGsGKSTLlklL~  521 (708)
T TIGR01193       503 TTIVGMSGSGKSTLAKLLV  521 (708)
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4999999999999999863

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=90.35  E-value=0.19  Score=38.18  Aligned_cols=16  Identities=25%  Similarity=0.343  Sum_probs=14.3

Q ss_pred             ceEecCCCcHHHHHHh
Q 046733           87 VIVGIGGLGKIVVWKN  102 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~  102 (106)
                      -|.|..|.||||||..
T Consensus        28 ~i~G~~G~GKTtl~~~   43 (230)
T PRK08533         28 LIEGDESTGKSILSQR   43 (230)
T ss_pred             EEECCCCCCHHHHHHH
Confidence            8899999999999744

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=90.32  E-value=0.18  Score=41.98  Aligned_cols=18  Identities=28%  Similarity=0.466  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        35 ~liG~nGsGKSTLl~~i~   52 (510)
T PRK09700         35 ALLGENGAGKSTLMKVLS   52 (510)
T ss_pred             EEECCCCCCHHHHHHHHc
Confidence            999999999999999864

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=90.31  E-value=0.18  Score=42.17  Aligned_cols=18  Identities=28%  Similarity=0.300  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       316 ~i~G~nGsGKSTLlk~l~  333 (529)
T PRK15134        316 GLVGESGSGKSTTGLALL  333 (529)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999875

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=90.28  E-value=0.18  Score=41.78  Aligned_cols=18  Identities=28%  Similarity=0.604  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        28 ~liG~nGsGKSTLl~~l~   45 (491)
T PRK10982         28 ALMGENGAGKSTLLKCLF   45 (491)
T ss_pred             EEECCCCCCHHHHHHHHc
Confidence            999999999999999864

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=90.27  E-value=0.18  Score=41.93  Aligned_cols=18  Identities=17%  Similarity=0.425  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       293 ~l~G~NGsGKSTLlk~i~  310 (510)
T PRK09700        293 GFAGLVGSGRTELMNCLF  310 (510)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=90.26  E-value=0.18  Score=41.87  Aligned_cols=18  Identities=28%  Similarity=0.457  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        34 ~l~G~nGsGKSTLl~~l~   51 (501)
T PRK11288         34 ALMGENGAGKSTLLKILS   51 (501)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=90.26  E-value=0.2  Score=38.70  Aligned_cols=18  Identities=39%  Similarity=0.580  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        40 ~l~G~nGsGKSTLl~~l~   57 (280)
T PRK13633         40 VILGRNGSGKSTIAKHMN   57 (280)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=90.21  E-value=0.35  Score=39.01  Aligned_cols=32  Identities=22%  Similarity=0.392  Sum_probs=21.3

Q ss_pred             HHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           73 KIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        73 ~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++.+.......+-|.|.||.|||+|.+.+.
T Consensus        12 ~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~   43 (364)
T PF05970_consen   12 TVIEAIENEEGLNFFVTGPAGTGKSFLIKAII   43 (364)
T ss_pred             HHHHHHHccCCcEEEEEcCCCCChhHHHHHHH
Confidence            33444433222233888999999999998764

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>PLN02165 adenylate isopentenyltransferase

Probab=90.20  E-value=0.19  Score=41.12  Aligned_cols=17  Identities=35%  Similarity=0.511  Sum_probs=15.8

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|+.|+||||||..+
T Consensus        47 vIiGPTGSGKStLA~~L   63 (334)
T PLN02165         47 VIMGATGSGKSRLSVDL   63 (334)
T ss_pred             EEECCCCCcHHHHHHHH
Confidence            99999999999999865

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=90.19  E-value=0.21  Score=37.96  Aligned_cols=18  Identities=28%  Similarity=0.325  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        51 ~i~G~nGsGKSTLl~~l~   68 (257)
T cd03288          51 GICGRTGSGKSSLSLAFF   68 (257)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            899999999999999864

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=90.17  E-value=0.19  Score=40.64  Aligned_cols=18  Identities=28%  Similarity=0.494  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        36 ~llGpsGsGKSTLLr~Ia   53 (351)
T PRK11432         36 TLLGPSGCGKTTVLRLVA   53 (351)
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            999999999999999864

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=90.14  E-value=0.23  Score=31.28  Aligned_cols=18  Identities=33%  Similarity=0.488  Sum_probs=16.0

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|.|..|.|||||.-++.
T Consensus        27 li~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   27 LITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            889999999999988764

>PHA02244 ATPase-like protein

Probab=90.13  E-value=0.36  Score=40.31  Aligned_cols=21  Identities=24%  Similarity=0.185  Sum_probs=17.7

Q ss_pred             CcceEecCCCcHHHHHHhhhc
Q 046733           85 DTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .+-|+|..|+|||+||+.+.+
T Consensus       121 PVLL~GppGtGKTtLA~aLA~  141 (383)
T PHA02244        121 PVFLKGGAGSGKNHIAEQIAE  141 (383)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            347889999999999998753

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=90.10  E-value=0.36  Score=41.36  Aligned_cols=43  Identities=19%  Similarity=0.200  Sum_probs=34.2

Q ss_pred             ceeecchhHHHHHHHHhcCCC--CCcceEecCCCcHHHHHHhhhc
Q 046733           63 FAYGRDGDRNKIINRLSALND--VDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        63 ~vvGrd~~~~~lv~~L~~~~~--~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +++|.......+.+.+..-..  ..+-|.|-.|.||+.+|+.+|+
T Consensus       213 ~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~  257 (526)
T TIGR02329       213 DLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQ  257 (526)
T ss_pred             heeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHH
Confidence            599999888888887754322  2458889999999999999985

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=90.09  E-value=0.19  Score=41.73  Aligned_cols=18  Identities=28%  Similarity=0.543  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       282 ~liG~NGsGKSTLl~~l~  299 (501)
T PRK10762        282 GVSGLMGAGRTELMKVLY  299 (501)
T ss_pred             EEecCCCCCHHHHHHHHh
Confidence            899999999999999875

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=90.07  E-value=0.19  Score=42.04  Aligned_cols=18  Identities=22%  Similarity=0.532  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       293 ~l~G~NGsGKSTLl~~i~  310 (510)
T PRK15439        293 GLAGVVGAGRTELAETLY  310 (510)
T ss_pred             EEECCCCCCHHHHHHHHc
Confidence            999999999999999874

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=90.06  E-value=0.22  Score=37.10  Aligned_cols=19  Identities=47%  Similarity=0.574  Sum_probs=16.6

Q ss_pred             CcceEecCCCcHHHHHHhh
Q 046733           85 DTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~V  103 (106)
                      ++.|+|..|+|||||....
T Consensus        15 Ki~vvG~~gvGKTsli~~~   33 (219)
T PLN03071         15 KLVIVGDGGTGKTTFVKRH   33 (219)
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            4589999999999999864

>PRK07952 DNA replication protein DnaC; Validated

Probab=90.01  E-value=0.2  Score=38.84  Aligned_cols=18  Identities=28%  Similarity=0.322  Sum_probs=16.2

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      -++|-+|.|||+||.++.
T Consensus       103 ~l~G~~GtGKThLa~aia  120 (244)
T PRK07952        103 IFSGKPGTGKNHLAAAIC  120 (244)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            788999999999999864

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=90.01  E-value=0.18  Score=37.81  Aligned_cols=14  Identities=43%  Similarity=0.648  Sum_probs=13.5

Q ss_pred             ceEecCCCcHHHHH
Q 046733           87 VIVGIGGLGKIVVW  100 (106)
Q Consensus        87 ~IvGmGGiGKTTLA  100 (106)
                      .|+|..|.|||||+
T Consensus        25 ~l~G~sGsGKSTL~   38 (226)
T cd03270          25 VITGVSGSGKSSLA   38 (226)
T ss_pred             EEEcCCCCCHHHHH
Confidence            99999999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=89.98  E-value=0.43  Score=43.08  Aligned_cols=42  Identities=21%  Similarity=0.326  Sum_probs=32.0

Q ss_pred             CceeecchhHHHHHHHHhcCC------CC--Cc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALN------DV--DT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~------~~--~~-~IvGmGGiGKTTLA~~V  103 (106)
                      ..|+|.++.++.|.+.+....      ..  .+ -.+|..|+|||.||+.+
T Consensus       566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~L  616 (852)
T TIGR03345       566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALAL  616 (852)
T ss_pred             CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHH
Confidence            479999999999988875421      11  12 66799999999999864

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=89.98  E-value=0.2  Score=43.13  Aligned_cols=18  Identities=28%  Similarity=0.431  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       354 ~lvG~nGsGKSTLlk~i~  371 (623)
T PRK10261        354 SLVGESGSGKSTTGRALL  371 (623)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999874

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=89.98  E-value=0.2  Score=42.39  Aligned_cols=18  Identities=39%  Similarity=0.558  Sum_probs=16.9

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       354 ~l~G~NGsGKSTLl~~i~  371 (556)
T PRK11819        354 GIIGPNGAGKSTLFKMIT  371 (556)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999875

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=89.97  E-value=0.19  Score=43.38  Aligned_cols=19  Identities=32%  Similarity=0.385  Sum_probs=17.1

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|||..|.|||||++.+.
T Consensus       508 vaIvG~sGsGKSTLlklL~  526 (710)
T TIGR03796       508 VALVGGSGSGKSTIAKLVA  526 (710)
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4999999999999999863

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=89.97  E-value=0.21  Score=39.73  Aligned_cols=17  Identities=35%  Similarity=0.540  Sum_probs=16.0

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|..|.|||||.+.+
T Consensus        61 ~I~G~NGsGKTTLL~ll   77 (257)
T COG1119          61 AIVGPNGAGKTTLLSLL   77 (257)
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            99999999999999875

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=89.96  E-value=0.37  Score=41.53  Aligned_cols=44  Identities=16%  Similarity=0.160  Sum_probs=34.7

Q ss_pred             CceeecchhHHHHHHHHhcCCC--CCcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSALND--VDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~--~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .+++|.....+.+.+.+..-..  ..+-|.|-.|.||+++|+.+++
T Consensus       219 ~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~  264 (538)
T PRK15424        219 GDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHR  264 (538)
T ss_pred             hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHH
Confidence            3599999888888887754322  2458889999999999999975

>cd01858 NGP_1 NGP-1

Probab=89.95  E-value=0.25  Score=34.55  Aligned_cols=18  Identities=17%  Similarity=0.333  Sum_probs=16.0

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .++|+.|+||+||-..+.
T Consensus       106 ~~~G~~nvGKStliN~l~  123 (157)
T cd01858         106 GFIGYPNVGKSSIINTLR  123 (157)
T ss_pred             EEEeCCCCChHHHHHHHh
Confidence            789999999999988764

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK12377 putative replication protein; Provisional

Probab=89.95  E-value=0.21  Score=38.89  Aligned_cols=19  Identities=32%  Similarity=0.211  Sum_probs=16.8

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +-++|..|+|||.||.++.
T Consensus       104 l~l~G~~GtGKThLa~AIa  122 (248)
T PRK12377        104 FVFSGKPGTGKNHLAAAIG  122 (248)
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3788999999999999875

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=89.93  E-value=0.2  Score=42.31  Aligned_cols=17  Identities=29%  Similarity=0.423  Sum_probs=15.4

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .++|.+|+||||++..+
T Consensus       227 ~lvGptGvGKTTtaaKL  243 (432)
T PRK12724        227 FFVGPTGSGKTTSIAKL  243 (432)
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            78899999999999875

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=89.93  E-value=0.21  Score=37.37  Aligned_cols=18  Identities=39%  Similarity=0.514  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||-+++.
T Consensus        29 ~ivGpNGaGKSTll~~i~   46 (212)
T cd03274          29 AIVGPNGSGKSNVIDSML   46 (212)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999998764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=89.91  E-value=0.21  Score=41.67  Aligned_cols=18  Identities=44%  Similarity=0.479  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       314 ~l~G~NGsGKSTLl~~l~  331 (520)
T TIGR03269       314 GIVGTSGAGKTTLSKIIA  331 (520)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999874

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=89.90  E-value=0.22  Score=41.84  Aligned_cols=19  Identities=21%  Similarity=0.254  Sum_probs=17.1

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|.|||||++.+.
T Consensus       352 ~aivG~sGsGKSTL~~ll~  370 (547)
T PRK10522        352 LFLIGGNGSGKSTLAMLLT  370 (547)
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            3999999999999999864

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.90  E-value=0.21  Score=39.90  Aligned_cols=18  Identities=28%  Similarity=0.538  Sum_probs=17.0

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.++
T Consensus       112 ~IvG~~GsGKSTLl~~L~  129 (329)
T PRK14257        112 AFIGPSGCGKSTFLRNLN  129 (329)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999876

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=89.89  E-value=0.2  Score=41.36  Aligned_cols=18  Identities=39%  Similarity=0.446  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       290 ~i~G~NGsGKSTLl~~l~  307 (490)
T PRK10938        290 QIVGPNGAGKSTLLSLIT  307 (490)
T ss_pred             EEECCCCCCHHHHHHHHc
Confidence            899999999999999874

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=89.89  E-value=0.22  Score=38.71  Aligned_cols=19  Identities=37%  Similarity=0.524  Sum_probs=17.6

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      -|+|..|.|||||-+++|-
T Consensus        32 fl~GpSGAGKSTllkLi~~   50 (223)
T COG2884          32 FLTGPSGAGKSTLLKLIYG   50 (223)
T ss_pred             EEECCCCCCHHHHHHHHHh
Confidence            8999999999999999883

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.89  E-value=0.21  Score=38.09  Aligned_cols=17  Identities=35%  Similarity=0.474  Sum_probs=16.0

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|..|.|||||.+.+
T Consensus        40 ~i~G~nGsGKSTLl~~i   56 (257)
T PRK14246         40 GIMGPSGSGKSTLLKVL   56 (257)
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            99999999999999976

>PLN03118 Rab family protein; Provisional

Probab=89.89  E-value=0.22  Score=36.30  Aligned_cols=19  Identities=21%  Similarity=0.483  Sum_probs=16.5

Q ss_pred             CcceEecCCCcHHHHHHhh
Q 046733           85 DTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~V  103 (106)
                      ++.|+|-.|+|||||...+
T Consensus        16 kv~ivG~~~vGKTsli~~l   34 (211)
T PLN03118         16 KILLIGDSGVGKSSLLVSF   34 (211)
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            4589999999999999765

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=89.77  E-value=0.23  Score=41.62  Aligned_cols=19  Identities=32%  Similarity=0.415  Sum_probs=17.1

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|.|||||++.+.
T Consensus       347 ~~ivG~sGsGKSTL~~ll~  365 (544)
T TIGR01842       347 LAIIGPSGSGKSTLARLIV  365 (544)
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            3999999999999999864

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=89.76  E-value=0.22  Score=40.29  Aligned_cols=18  Identities=28%  Similarity=0.475  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        32 ~llGpsGsGKSTLLr~Ia   49 (353)
T PRK10851         32 ALLGPSGSGKTTLLRIIA   49 (353)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=89.72  E-value=0.22  Score=36.51  Aligned_cols=19  Identities=26%  Similarity=0.254  Sum_probs=16.6

Q ss_pred             Cc-ceEecCCCcHHHHHHhh
Q 046733           85 DT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        85 ~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .+ .|+|..|.|||+||..+
T Consensus        20 ~v~~I~G~~GsGKT~l~~~i   39 (226)
T cd01393          20 RITEIFGEFGSGKTQLCLQL   39 (226)
T ss_pred             cEEEEeCCCCCChhHHHHHH
Confidence            45 99999999999999865

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=89.66  E-value=0.57  Score=35.67  Aligned_cols=41  Identities=10%  Similarity=0.033  Sum_probs=30.6

Q ss_pred             ceeecchhHHHHHHHHhcCC-CCC-cceEecCCCcHHHHHHhh
Q 046733           63 FAYGRDGDRNKIINRLSALN-DVD-TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        63 ~vvGrd~~~~~lv~~L~~~~-~~~-~~IvGmGGiGKTTLA~~V  103 (106)
                      +++|.+.....+..+..... -.. +=+.|..|+||||+|..+
T Consensus         2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~l   44 (325)
T COG0470           2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALAL   44 (325)
T ss_pred             CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHH
Confidence            46777888888888887433 223 367799999999999753

>PRK03003 GTP-binding protein Der; Reviewed

Probab=89.63  E-value=0.38  Score=40.06  Aligned_cols=19  Identities=26%  Similarity=0.417  Sum_probs=16.6

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        41 V~IvG~~nvGKSSL~nrl~   59 (472)
T PRK03003         41 VAVVGRPNVGKSTLVNRIL   59 (472)
T ss_pred             EEEEcCCCCCHHHHHHHHh
Confidence            4999999999999998653

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=89.59  E-value=0.22  Score=41.12  Aligned_cols=17  Identities=24%  Similarity=0.485  Sum_probs=15.5

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .++|..|+||||++.++
T Consensus       141 ~lvGptGvGKTTtiakL  157 (374)
T PRK14722        141 ALMGPTGVGKTTTTAKL  157 (374)
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            88999999999998875

>PLN02674 adenylate kinase

Probab=89.58  E-value=0.23  Score=38.67  Aligned_cols=18  Identities=28%  Similarity=0.292  Sum_probs=16.1

Q ss_pred             cceEecCCCcHHHHHHhh
Q 046733           86 TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~V  103 (106)
                      +-|.|+.|.||+|+|+.+
T Consensus        34 i~l~G~PGsGKgT~a~~L   51 (244)
T PLN02674         34 LILIGPPGSGKGTQSPII   51 (244)
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            478899999999999975

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=89.58  E-value=0.23  Score=40.23  Aligned_cols=18  Identities=33%  Similarity=0.549  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+-
T Consensus        34 ~llG~sGsGKSTLLr~ia   51 (356)
T PRK11650         34 VLVGPSGCGKSTLLRMVA   51 (356)
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            899999999999999763

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=89.57  E-value=0.22  Score=42.07  Aligned_cols=18  Identities=28%  Similarity=0.532  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       352 ~l~G~NGsGKSTLl~~l~  369 (552)
T TIGR03719       352 GVIGPNGAGKSTLFRMIT  369 (552)
T ss_pred             EEECCCCCCHHHHHHHHc
Confidence            999999999999999874

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=89.56  E-value=0.26  Score=37.58  Aligned_cols=35  Identities=17%  Similarity=0.263  Sum_probs=21.1

Q ss_pred             eecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHh
Q 046733           65 YGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKN  102 (106)
Q Consensus        65 vGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~  102 (106)
                      ..+.......++.|..   .++ .+.|..|.|||.||-.
T Consensus         3 ~p~~~~Q~~~~~al~~---~~~v~~~G~AGTGKT~LA~a   38 (205)
T PF02562_consen    3 KPKNEEQKFALDALLN---NDLVIVNGPAGTGKTFLALA   38 (205)
T ss_dssp             ---SHHHHHHHHHHHH----SEEEEE--TTSSTTHHHHH
T ss_pred             cCCCHHHHHHHHHHHh---CCeEEEECCCCCcHHHHHHH
Confidence            3455556666777762   233 7889999999999864

; GO: 0005524 ATP binding; PDB: 3B85_A.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=89.55  E-value=0.23  Score=39.33  Aligned_cols=17  Identities=35%  Similarity=0.456  Sum_probs=16.0

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|.|+.|.||+|||..+
T Consensus        34 aiMGPNGsGKSTLa~~i   50 (251)
T COG0396          34 AIMGPNGSGKSTLAYTI   50 (251)
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            99999999999999875

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=89.54  E-value=0.2  Score=45.37  Aligned_cols=17  Identities=35%  Similarity=0.538  Sum_probs=15.0

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -++|..|+||||||..|
T Consensus       330 LL~GppGlGKTTLAHVi  346 (877)
T KOG1969|consen  330 LLCGPPGLGKTTLAHVI  346 (877)
T ss_pred             EeecCCCCChhHHHHHH
Confidence            67799999999999865

>PLN00223 ADP-ribosylation factor; Provisional

Probab=89.53  E-value=0.25  Score=35.50  Aligned_cols=20  Identities=20%  Similarity=0.444  Sum_probs=17.2

Q ss_pred             CcceEecCCCcHHHHHHhhh
Q 046733           85 DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++.|+|..|+|||||...+.
T Consensus        19 ki~ivG~~~~GKTsl~~~l~   38 (181)
T PLN00223         19 RILMVGLDAAGKTTILYKLK   38 (181)
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            45999999999999998764

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=89.52  E-value=0.24  Score=38.77  Aligned_cols=18  Identities=33%  Similarity=0.350  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        32 ~l~G~NGaGKTTLl~~l~   49 (301)
T TIGR03522        32 GFLGPNGAGKSTTMKIIT   49 (301)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999764

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=89.52  E-value=0.25  Score=41.13  Aligned_cols=19  Identities=26%  Similarity=0.454  Sum_probs=17.1

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|.|||||++.+.
T Consensus       351 ~~ivG~sGsGKSTL~~ll~  369 (529)
T TIGR02857       351 VALVGPSGAGKSTLLNLLL  369 (529)
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            3999999999999999864

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=89.49  E-value=0.6  Score=39.22  Aligned_cols=42  Identities=19%  Similarity=0.238  Sum_probs=27.5

Q ss_pred             CceeecchhHHHH---HHHHhcCCCC-Cc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKI---INRLSALNDV-DT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~l---v~~L~~~~~~-~~-~IvGmGGiGKTTLA~~V  103 (106)
                      ..+||..+.++..   ++++....-. +. -++|..|.|||+||-.+
T Consensus        24 ~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~i   70 (398)
T PF06068_consen   24 DGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAI   70 (398)
T ss_dssp             TTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHH
T ss_pred             ccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHH
Confidence            4799998777653   5555544322 33 88899999999999865

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=89.47  E-value=0.3  Score=42.44  Aligned_cols=33  Identities=24%  Similarity=0.331  Sum_probs=23.9

Q ss_pred             HHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           71 RNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        71 ~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      -++|.+.|.... ..+-|-|..|.||||.||++-
T Consensus       252 ~dkl~eRL~era-eGILIAG~PGaGKsTFaqAlA  284 (604)
T COG1855         252 SDKLKERLEERA-EGILIAGAPGAGKSTFAQALA  284 (604)
T ss_pred             CHHHHHHHHhhh-cceEEecCCCCChhHHHHHHH
Confidence            356777765432 234677999999999999874

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=89.45  E-value=0.25  Score=38.89  Aligned_cols=18  Identities=33%  Similarity=0.602  Sum_probs=16.9

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      +++|..|.|||||.+.++
T Consensus        33 ~llG~NGaGKTTlLkti~   50 (237)
T COG0410          33 ALLGRNGAGKTTLLKTIM   50 (237)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999875

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=89.40  E-value=0.23  Score=41.09  Aligned_cols=18  Identities=33%  Similarity=0.582  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        58 ~LvG~NGsGKSTLLr~I~   75 (400)
T PRK10070         58 VIMGLSGSGKSTMVRLLN   75 (400)
T ss_pred             EEECCCCchHHHHHHHHH
Confidence            899999999999999874

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=89.38  E-value=0.23  Score=43.00  Aligned_cols=19  Identities=26%  Similarity=0.340  Sum_probs=17.0

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|.|||||.+.+.
T Consensus        30 v~LvG~NGsGKSTLLkiL~   48 (638)
T PRK10636         30 VGLVGKNGCGKSTLLALLK   48 (638)
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            3999999999999999864

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=89.37  E-value=0.24  Score=41.93  Aligned_cols=18  Identities=22%  Similarity=0.484  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        37 ~iiG~NGsGKSTLlk~i~   54 (556)
T PRK11819         37 GVLGLNGAGKSTLLRIMA   54 (556)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999874

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=89.34  E-value=0.24  Score=43.23  Aligned_cols=19  Identities=32%  Similarity=0.531  Sum_probs=17.1

Q ss_pred             CcceEecCCCcHHHHHHhh
Q 046733           85 DTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~V  103 (106)
                      ++.+||..|+|||||.+++
T Consensus       108 RYGLvGrNG~GKsTLLRai  126 (582)
T KOG0062|consen  108 RYGLVGRNGIGKSTLLRAI  126 (582)
T ss_pred             ccceeCCCCCcHHHHHHHH
Confidence            4599999999999999976

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	106
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	5e-06
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 42.7 bits (100), Expect = 5e-06
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 65  YGRDGDRNKIINRLSALNDVDT---VIVGIGGLGK 96
           Y R+   +++I +L  + D+D+    + G  G GK
Sbjct: 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGK 165

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 42.1 bits (99), Expect = 6e-06
 Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 2/33 (6%)

Query: 66  GRDGDRNKIINRLSALNDVDTV--IVGIGGLGK 96
            R    N I  +LS L        I G+ G GK
Sbjct: 128 TRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGK 160

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 5e-05
 Identities = 27/144 (18%), Positives = 46/144 (31%), Gaps = 46/144 (31%)

Query: 5   LSAEE--NIAASSNQSSHL---------PQTSSFPKFIIKAVD-DGSIIVSAPNSKTLGE 52
           LS EE  +I  S +  S            Q     KF+ + +  +   ++S   ++    
Sbjct: 46  LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105

Query: 53  ALNF----------------FSKYNKFAYGRDGDRNKIINRLSALNDVDTVIV-GIGGLG 95
           ++                  F+KYN     R     K+   L  L     V++ G+ G G
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYN---VSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162

Query: 96  KIV----VWKN----------IYW 105
           K      V  +          I+W
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFW 186

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	98.9
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.74
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	98.6
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	98.45
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.14
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.0
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.93
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.88
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.83
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	97.81
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	97.73
2fna_A	357	Conserved hypothetical protein; structural genomic	97.68
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.68
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.57
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.52
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.49
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.47
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.46
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.38
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.31
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.28
3co5_A	143	Putative two-component system transcriptional RES	97.25
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.22
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.21
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.18
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.16
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.14
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.1
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.09
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.08
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.01
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.0
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.99
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.93
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.87
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.84
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.83
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.82
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.82
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.79
3bos_A	242	Putative DNA replication factor; P-loop containing	96.79
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.76
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.67
3pvs_A	447	Replication-associated recombination protein A; ma	96.61
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.58
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.58
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.56
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.51
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.49
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.47
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.45
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.44
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.43
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.36
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.3
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.29
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.29
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.25
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.24
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.18
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.16
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.13
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.13
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.01
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.94
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	95.91
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.9
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	95.84
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.78
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	95.76
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	95.57
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	95.56
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.55
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	95.5
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.5
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.49
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	95.4
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.35
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	95.34
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.32
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.31
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.28
4a74_A	231	DNA repair and recombination protein RADA; hydrola	95.25
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.25
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	95.17
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	95.14
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.14
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	95.05
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.03
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	95.01
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	94.98
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	94.98
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	94.94
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	94.89
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.86
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	94.85
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	94.84
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	94.84
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	94.8
3kta_A	182	Chromosome segregation protein SMC; structural mai	94.79
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	94.79
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	94.72
2cvh_A	220	DNA repair and recombination protein RADB; filamen	94.7
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	94.68
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	94.64
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	94.55
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	94.52
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	94.5
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	94.49
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	94.41
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	94.39
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	94.33
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	94.32
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	94.25
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	94.23
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	94.23
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	94.21
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	94.2
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	94.19
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	94.16
1b0u_A	262	Histidine permease; ABC transporter, transport pro	94.14
1g6h_A	257	High-affinity branched-chain amino acid transport	94.12
1ji0_A	240	ABC transporter; ATP binding protein, structural g	94.11
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	94.09
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	94.08
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	94.08
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	94.08
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	94.05
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	94.03
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	94.02
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	94.02
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	94.0
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	94.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	93.99
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	93.99
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	93.97
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	93.97
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	93.95
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	93.94
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	93.94
1sgw_A	214	Putative ABC transporter; structural genomics, P p	93.93
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	93.93
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	93.89
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	93.87
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	93.86
2ghi_A	260	Transport protein; multidrug resistance protein, M	93.85
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	93.84
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	93.84
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	93.83
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	93.79
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	93.75
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	93.75
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	93.71
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	93.71
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	93.67
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	93.62
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	93.61
2qgz_A	308	Helicase loader, putative primosome component; str	93.59
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	93.58
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	93.57
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	93.51
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	93.46
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	93.45
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	93.42
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	93.4
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	93.38
2ged_A	193	SR-beta, signal recognition particle receptor beta	93.36
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	93.31
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	93.27
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	93.2
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	93.2
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	93.17
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	93.16
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	93.15
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	93.09
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	93.08
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	93.07
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	93.04
3llu_A	196	RAS-related GTP-binding protein C; structural geno	93.02
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	93.02
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	92.97
2eyu_A	261	Twitching motility protein PILT; pilus retraction	92.96
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	92.96
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	92.94
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	92.88
2og2_A	359	Putative signal recognition particle receptor; nuc	92.78
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	92.76
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	92.74
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	92.64
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	92.64
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	92.63
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	92.62
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	92.61
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	92.6
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	92.58
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	92.58
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	92.52
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	92.49
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	91.64
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	92.42
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	92.33
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	92.19
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	92.18
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	92.18
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	92.16
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	92.15
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	92.11
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	92.1
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	92.09
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	92.08
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	92.02
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	91.98
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	91.97
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	91.96
1p9r_A	418	General secretion pathway protein E; bacterial typ	91.96
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	91.96
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	91.96
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	91.96
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	91.95
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	91.95
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	91.89
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	91.88
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	91.86
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	91.85
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	91.85
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	91.84
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	91.83
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	91.81
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	91.8
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	91.77
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	91.75
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	91.68
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	91.66
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	91.66
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	91.63
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	91.62
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	91.61
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	91.61
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	91.58
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	91.57
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	91.53
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	91.53
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	91.53
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	91.49
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	91.47
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	91.46
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	91.45
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	91.41
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	91.4
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	91.39
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	91.39
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	91.38
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	91.38
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	91.36
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	91.29
3end_A	307	Light-independent protochlorophyllide reductase ir	91.27
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	91.23
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	91.22
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	91.18
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	91.12
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	91.1
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	91.08
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	91.08
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	91.02
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	90.99
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	90.97
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	90.96
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	90.94
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	90.94
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	90.93
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	90.89
2ewv_A	372	Twitching motility protein PILT; pilus retraction	90.88
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	90.86
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	90.82
1tue_A	212	Replication protein E1; helicase, replication, E1E	90.77
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	90.75
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	90.71
2xxa_A	433	Signal recognition particle protein; protein trans	90.67
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	90.64
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	90.62
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	90.51
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	90.39
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	90.39
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	90.38
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	90.38
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	90.26
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	90.22
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	90.21
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	90.07
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	90.05
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	90.01
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	89.97
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	89.95
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	89.86
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	89.77
3fwy_A	314	Light-independent protochlorophyllide reductase I	89.7
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	89.65
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	89.64
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	89.61
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	89.57
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	89.48
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	89.43
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	89.36
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	89.36
1e69_A	322	Chromosome segregation SMC protein; structural mai	89.31
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	89.28
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	89.27
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	89.24
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	89.23
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	89.21
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	89.13
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	89.12
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	89.09
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	89.08
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	89.08
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	89.05
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	89.04
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	88.96
3ice_A	422	Transcription termination factor RHO; transcriptio	88.96
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	88.95
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	88.93
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	88.85
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	88.84
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	88.78
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	88.77
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	88.71
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	88.45
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	88.45
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	88.35
2z43_A	324	DNA repair and recombination protein RADA; archaea	88.35
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	88.35
1u94_A	356	RECA protein, recombinase A; homologous recombinat	88.22
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	88.18
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	88.12
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	88.09
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	88.06
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	87.95
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	87.85
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	87.84
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	87.82
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	87.69
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	87.66
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	87.59
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	87.59
2r6a_A	454	DNAB helicase, replicative helicase; replication,	87.35
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	87.3
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	87.26
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	87.23
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	87.13
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	87.08
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	86.99
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	86.98
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	86.86
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	86.81
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	86.78
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	86.57
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	86.3
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	86.16
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	86.07
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	86.03
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	86.02
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	86.02
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	85.86
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	85.77
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	85.67
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	85.61
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	85.51
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	85.36
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	85.24
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	84.88
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	84.61
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	84.54
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	84.36
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	84.24
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	84.16
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	84.14
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	84.08
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	83.95
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	83.92
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	83.85
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	83.64
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	83.61
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	83.54
1xp8_A	366	RECA protein, recombinase A; recombination, radior	83.18
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	83.17
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	82.79
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	82.28
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	82.09
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	82.04
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	81.78
3io5_A	333	Recombination and repair protein; storage dimer, i	81.65
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	81.46
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	81.42
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	81.26
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	81.21
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	80.96
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	80.68
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	80.66
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	80.64
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	80.58
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	80.43
3l0o_A	427	Transcription termination factor RHO; helicase, RH	80.27
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	80.16

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=98.90  E-value=7.5e-10  Score=90.57  Aligned_cols=43  Identities=23%  Similarity=0.305  Sum_probs=35.9

Q ss_pred             ceeecchhHHHHHHHHhcCCC--CCc-ceEecCCCcHHHHHHhhhc
Q 046733           63 FAYGRDGDRNKIINRLSALND--VDT-VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        63 ~vvGrd~~~~~lv~~L~~~~~--~~~-~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ..+||++++++|.++|.....  ..+ +|+||||+||||||+.||+
T Consensus       129 ~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          129 TCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             CSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence            336999999999999975422  234 9999999999999999994

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.74  E-value=5.9e-09  Score=88.95  Aligned_cols=44  Identities=25%  Similarity=0.202  Sum_probs=37.5

Q ss_pred             CceeecchhHHHHHHHHhcCCC-CCc-ceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSALND-VDT-VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~-~~~-~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ..+|||+++.++|.++|..... .++ +|+||||+||||||+.+|+
T Consensus       124 ~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~  169 (1249)
T 3sfz_A          124 VIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVR  169 (1249)
T ss_dssp             SSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTC
T ss_pred             ceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhc
Confidence            5799999999999999975433 244 9999999999999999886

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=98.60  E-value=2.9e-08  Score=80.44  Aligned_cols=44  Identities=27%  Similarity=0.227  Sum_probs=36.9

Q ss_pred             CceeecchhHHHHHHHHhcCCC-CCc-ceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSALND-VDT-VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~-~~~-~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ..+|||+.+.+.|.++|..... .++ .|+||||+||||||..+|+
T Consensus       124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence            5799999999999999975322 244 9999999999999998875

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=98.45  E-value=8.2e-08  Score=86.74  Aligned_cols=43  Identities=23%  Similarity=0.232  Sum_probs=36.9

Q ss_pred             ceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhhc
Q 046733           63 FAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        63 ~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ..|||+.+.++|.++|...+..++ +|+||||+||||||+.+|+
T Consensus       129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~  172 (1221)
T 1vt4_I          129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL  172 (1221)
T ss_dssp             SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHH
Confidence            359999999999999986444455 9999999999999999984

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.14  E-value=1.7e-06  Score=58.26  Aligned_cols=43  Identities=23%  Similarity=0.398  Sum_probs=35.4

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++|+++..+.+.+++.......+-|+|..|+|||+||+.+.
T Consensus        22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~   64 (195)
T 1jbk_A           22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLA   64 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHH
Confidence            4689999999999998866433334889999999999999865

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.00  E-value=3.4e-06  Score=57.06  Aligned_cols=43  Identities=23%  Similarity=0.386  Sum_probs=35.2

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|+++..+.+.+.+.......+-|+|..|+||||||+.+.
T Consensus        22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~   64 (187)
T 2p65_A           22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLA   64 (187)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHH
T ss_pred             chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHH
Confidence            4689999999999998866433334888999999999999764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.93  E-value=8.1e-06  Score=56.48  Aligned_cols=43  Identities=19%  Similarity=0.177  Sum_probs=35.5

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|++..++.|..++........ -|+|..|+||||||+.+.
T Consensus        23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~   66 (250)
T 1njg_A           23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA   66 (250)
T ss_dssp             GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            4699999999999998876543333 889999999999999875

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.88  E-value=1.2e-05  Score=55.17  Aligned_cols=43  Identities=16%  Similarity=0.118  Sum_probs=35.5

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|+++.++.+.+++.......+-|+|..|+|||+||+.+.
T Consensus        17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~   59 (226)
T 2chg_A           17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALA   59 (226)
T ss_dssp             GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence            4689999999999998876533345889999999999999865

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.83  E-value=1e-05  Score=60.76  Aligned_cols=43  Identities=26%  Similarity=0.279  Sum_probs=34.7

Q ss_pred             CceeecchhHHHHHHHHhc---CCCC-CcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSA---LNDV-DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~---~~~~-~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++||+++.+.|.++|..   .... .+-|+|+.|+|||||++.++
T Consensus        20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~   66 (386)
T 2qby_A           20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVL   66 (386)
T ss_dssp             SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHH
Confidence            4799999999999988764   2222 34899999999999999875

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=97.81  E-value=1.6e-05  Score=59.03  Aligned_cols=40  Identities=18%  Similarity=0.374  Sum_probs=34.2

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++||+++.+.|.+++...   .+ .|+|+.|+|||||++.+.
T Consensus        12 ~~~~gR~~el~~L~~~l~~~---~~v~i~G~~G~GKT~Ll~~~~   52 (350)
T 2qen_A           12 EDIFDREEESRKLEESLENY---PLTLLLGIRRVGKSSLLRAFL   52 (350)
T ss_dssp             GGSCSCHHHHHHHHHHHHHC---SEEEEECCTTSSHHHHHHHHH
T ss_pred             HhcCChHHHHHHHHHHHhcC---CeEEEECCCcCCHHHHHHHHH
Confidence            57999999999999988653   34 899999999999999865

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=97.73  E-value=1.5e-05  Score=60.91  Aligned_cols=43  Identities=16%  Similarity=0.090  Sum_probs=33.5

Q ss_pred             CceeecchhHHHHHHHH-hc---C--CCCC-cce--EecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRL-SA---L--NDVD-TVI--VGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L-~~---~--~~~~-~~I--vGmGGiGKTTLA~~Vy  104 (106)
                      ..++||+++.+.|.++| ..   .  .... +-|  +|++|+|||||++.++
T Consensus        22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~   73 (412)
T 1w5s_A           22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTV   73 (412)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHH
Confidence            47999999999999888 42   2  1222 355  8999999999999876

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=97.68  E-value=2.7e-05  Score=57.75  Aligned_cols=39  Identities=26%  Similarity=0.282  Sum_probs=32.3

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++||+++.+.|.+ +..   ..+.|+|+.|+|||||++.+.
T Consensus        13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~   51 (357)
T 2fna_A           13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGI   51 (357)
T ss_dssp             GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHH
T ss_pred             HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHH
Confidence            578999999999998 644   223899999999999998764

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.68  E-value=3.3e-05  Score=58.56  Aligned_cols=44  Identities=20%  Similarity=0.132  Sum_probs=34.6

Q ss_pred             CceeecchhHHHHHHHHhc---CCCC-CcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSA---LNDV-DTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~---~~~~-~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ..++||+++.+.+.++|..   .... .+-|+|++|+||||||+.++.
T Consensus        20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~   67 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN   67 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999887753   2222 238899999999999998763

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.57  E-value=3.9e-05  Score=57.66  Aligned_cols=43  Identities=16%  Similarity=0.333  Sum_probs=34.5

Q ss_pred             CceeecchhHHHHHHHHhcC---CCC-CcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSAL---NDV-DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~---~~~-~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++||+++.+.+..+|...   ... .+-|+|..|+||||||+.++
T Consensus        19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~   65 (387)
T 2v1u_A           19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVL   65 (387)
T ss_dssp             SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHH
Confidence            47999999999999988432   122 34888999999999999875

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.52  E-value=8.8e-05  Score=54.67  Aligned_cols=43  Identities=16%  Similarity=0.180  Sum_probs=35.4

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|+++.++.|.+++.......+-|+|..|+||||+|+.+.
T Consensus        21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~   63 (323)
T 1sxj_B           21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLA   63 (323)
T ss_dssp             GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHH
Confidence            4689999999999998876543336889999999999999764

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.49  E-value=6.9e-05  Score=56.61  Aligned_cols=43  Identities=19%  Similarity=0.232  Sum_probs=34.6

Q ss_pred             CceeecchhHHHHHHHHhc---CCCCC---cceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSA---LNDVD---TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~---~~~~~---~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++||+++.+.|.++|..   .....   +-|+|..|+|||||++.+.
T Consensus        17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~   65 (389)
T 1fnn_A           17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLW   65 (389)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHH
Confidence            4799999999999888854   22223   4889999999999999875

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.47  E-value=7.1e-05  Score=60.42  Aligned_cols=43  Identities=23%  Similarity=0.404  Sum_probs=36.2

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..+||+++.++.++..|......++-++|..|+|||+||+.+.
T Consensus       180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la  222 (468)
T 3pxg_A          180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLA  222 (468)
T ss_dssp             CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHH
T ss_pred             CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHH
Confidence            3599999999999999876544455788999999999999864

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.46  E-value=9e-05  Score=54.71  Aligned_cols=43  Identities=12%  Similarity=0.097  Sum_probs=35.4

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|+++.++.|.+++.......+-++|..|+||||+|+.+.
T Consensus        25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~   67 (327)
T 1iqp_A           25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALA   67 (327)
T ss_dssp             TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHH
T ss_pred             HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHH
Confidence            4699999999999988876543335888999999999999875

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.38  E-value=0.00012  Score=49.63  Aligned_cols=43  Identities=23%  Similarity=0.261  Sum_probs=32.9

Q ss_pred             ceeecchhHHHHHHHHhcC--CCCCcceEecCCCcHHHHHHhhhc
Q 046733           63 FAYGRDGDRNKIINRLSAL--NDVDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        63 ~vvGrd~~~~~lv~~L~~~--~~~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +++|+......+.+.+..-  ....+-|+|..|.|||+||+.+++
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~   46 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQ   46 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHH
Confidence            5789999999998877542  223458899999999999999874

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.31  E-value=0.00014  Score=53.44  Aligned_cols=43  Identities=16%  Similarity=0.159  Sum_probs=33.1

Q ss_pred             CceeecchhHHHHHHHHhcC------------C-CCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSAL------------N-DVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~------------~-~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++.|.+.+...            . ...+-|+|..|+|||+||+.+.
T Consensus        17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la   72 (285)
T 3h4m_A           17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVA   72 (285)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence            47999999999988776321            1 1123788999999999999875

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.28  E-value=0.00022  Score=53.35  Aligned_cols=43  Identities=16%  Similarity=0.111  Sum_probs=35.0

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|+++.++.|..++.......+-++|..|+||||||+.+.
T Consensus        37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la   79 (353)
T 1sxj_D           37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALT   79 (353)
T ss_dssp             TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHH
T ss_pred             HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHH
Confidence            4699999999999888865433335889999999999999764

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.25  E-value=0.0003  Score=47.67  Aligned_cols=44  Identities=11%  Similarity=0.009  Sum_probs=31.5

Q ss_pred             CceeecchhHHHHHHHHhc--CCCCCcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSA--LNDVDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~--~~~~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      -+++|++...+++.+.+..  .....+-|+|..|.|||+||+.++.
T Consensus         4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A            4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred             cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHH
Confidence            4688999888888887643  2223458899999999999999864

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.22  E-value=0.00028  Score=53.18  Aligned_cols=43  Identities=19%  Similarity=0.177  Sum_probs=34.8

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|+++.++.|.+.+........ -|+|..|+||||||+.+.
T Consensus        16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la   59 (373)
T 1jr3_A           16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA   59 (373)
T ss_dssp             TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHH
T ss_pred             hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            4699999999999988866543333 788999999999998763

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.21  E-value=0.00029  Score=60.56  Aligned_cols=43  Identities=23%  Similarity=0.406  Sum_probs=36.3

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++||+++.+.++..|......++-++|..|+||||||+.+.
T Consensus       170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la  212 (854)
T 1qvr_A          170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLA  212 (854)
T ss_dssp             CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHH
T ss_pred             cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHH
Confidence            4589999999999999876554455889999999999999764

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.18  E-value=0.00022  Score=60.22  Aligned_cols=43  Identities=23%  Similarity=0.404  Sum_probs=36.6

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++|+++.++.++..|......++-++|..|+|||++|+.+.
T Consensus       180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la  222 (758)
T 3pxi_A          180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLA  222 (758)
T ss_dssp             CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHH
T ss_pred             CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHH
Confidence            4699999999999999977555556888999999999999764

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.16  E-value=0.00029  Score=52.34  Aligned_cols=44  Identities=23%  Similarity=0.182  Sum_probs=33.6

Q ss_pred             CceeecchhHHHHHHHHhc----C-CCCCcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSA----L-NDVDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~----~-~~~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .+++|++..++.+..++..    . ....+-|+|..|+|||+||+.+.+
T Consensus        12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~   60 (324)
T 1hqc_A           12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH   60 (324)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred             HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence            4699999888888777642    1 122348899999999999998753

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.14  E-value=0.0003  Score=51.68  Aligned_cols=43  Identities=16%  Similarity=0.118  Sum_probs=33.8

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|+++.++.|.+++.......+-++|..|+|||++|+.+.
T Consensus        17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~   59 (319)
T 2chq_A           17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALA   59 (319)
T ss_dssp             GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHH
Confidence            4689999988888887755433235888999999999998764

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.10  E-value=0.0004  Score=51.39  Aligned_cols=42  Identities=17%  Similarity=0.125  Sum_probs=30.8

Q ss_pred             ceeecchhHHHHHHHHhc--------------CCCC-CcceEecCCCcHHHHHHhhh
Q 046733           63 FAYGRDGDRNKIINRLSA--------------LNDV-DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        63 ~vvGrd~~~~~lv~~L~~--------------~~~~-~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +++|.++.++.|.+++..              .... .+-|+|..|+|||+||+.+.
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la   88 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMA   88 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHH
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHH
Confidence            699999888888766531              1111 23788999999999998654

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.09  E-value=0.0005  Score=50.41  Aligned_cols=43  Identities=14%  Similarity=0.336  Sum_probs=33.1

Q ss_pred             CceeecchhHHHHHHHHhc--------------CCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSA--------------LNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~--------------~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++|.++.++.|...+..              .....+-++|..|+|||+||+.+.
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la   71 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLA   71 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHH
Confidence            4799999999888877643              112234788999999999999874

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.08  E-value=0.00036  Score=58.69  Aligned_cols=43  Identities=21%  Similarity=0.370  Sum_probs=35.9

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++|++++.+.+++.|......++-++|..|+|||+||+.+.
T Consensus       186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la  228 (758)
T 1r6b_X          186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLA  228 (758)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHH
Confidence            4689999999999998876544445888999999999999764

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.01  E-value=0.00069  Score=50.05  Aligned_cols=43  Identities=14%  Similarity=0.161  Sum_probs=32.5

Q ss_pred             CceeecchhHHHHHHHHhcC------------CCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSAL------------NDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~------------~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++.|.+++...            ....+-|+|..|+||||||+.+.
T Consensus        21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la   75 (297)
T 3b9p_A           21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVA   75 (297)
T ss_dssp             GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHH
T ss_pred             HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHH
Confidence            46999999888888776321            11123788999999999999875

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.00  E-value=0.00064  Score=51.12  Aligned_cols=43  Identities=21%  Similarity=0.195  Sum_probs=33.7

Q ss_pred             CceeecchhHHHHHHHHhcC---C--CCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSAL---N--DVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~---~--~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|++..++.+..++...   .  ...+-|+|..|+|||+||+.+.
T Consensus        29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia   76 (338)
T 3pfi_A           29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIIS   76 (338)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHH
T ss_pred             HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHH
Confidence            46999999999888887532   1  1234788999999999999874

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.99  E-value=0.00059  Score=49.10  Aligned_cols=43  Identities=19%  Similarity=0.253  Sum_probs=30.2

Q ss_pred             CceeecchhHHHHHHHH---hcCCC-------C--CcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRL---SALND-------V--DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L---~~~~~-------~--~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++.|.+++   .....       .  .+-|+|..|+|||+||+.+.
T Consensus         6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la   60 (262)
T 2qz4_A            6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVA   60 (262)
T ss_dssp             TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHH
Confidence            46899998777775554   22211       1  12678999999999999875

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.93  E-value=0.00055  Score=51.59  Aligned_cols=43  Identities=12%  Similarity=0.023  Sum_probs=32.1

Q ss_pred             CceeecchhHHHHHHHH-hcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRL-SALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L-~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++.+.+++ .......+-|+|..|+|||||++.+.
T Consensus        14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la   57 (354)
T 1sxj_E           14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALL   57 (354)
T ss_dssp             GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHH
T ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence            46889988888777766 33222235889999999999999763

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.87  E-value=0.0013  Score=47.93  Aligned_cols=43  Identities=19%  Similarity=0.302  Sum_probs=31.2

Q ss_pred             CceeecchhHHHHHHHHhc---C--------C-CCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSA---L--------N-DVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~---~--------~-~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++.|.+.+..   .        . ...+-|+|..|+|||+||+.+.
T Consensus        11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la   65 (268)
T 2r62_A           11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVA   65 (268)
T ss_dssp             TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHH
T ss_pred             HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHH
Confidence            4689999888887765531   0        1 1123788999999999999875

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.84  E-value=0.00081  Score=49.11  Aligned_cols=44  Identities=20%  Similarity=0.336  Sum_probs=31.1

Q ss_pred             CceeecchhHHHHHHHHhcC--CCCCcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSAL--NDVDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~--~~~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ..++|.+.....+.+.+...  ....+-|+|..|+|||+||+.++.
T Consensus         6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~   51 (265)
T 2bjv_A            6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHY   51 (265)
T ss_dssp             ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred             ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence            35889998888888776532  222348889999999999998864

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.83  E-value=0.0012  Score=49.94  Aligned_cols=43  Identities=16%  Similarity=0.173  Sum_probs=30.9

Q ss_pred             CceeecchhHHHH---HHHHhcCCCC--CcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKI---INRLSALNDV--DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~l---v~~L~~~~~~--~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|++..++.+   ...+......  .+-|+|..|+|||+||+.+.
T Consensus        44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la   91 (368)
T 3uk6_A           44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMA   91 (368)
T ss_dssp             TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHH
T ss_pred             hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            4799999877664   4444433322  24888999999999999874

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.82  E-value=0.00079  Score=48.97  Aligned_cols=43  Identities=21%  Similarity=0.265  Sum_probs=30.2

Q ss_pred             CceeecchhHHHHHHHH---hcCC---------CCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRL---SALN---------DVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L---~~~~---------~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++.|.+++   ....         ...+-|+|..|.||||||+.+.
T Consensus        12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la   66 (257)
T 1lv7_A           12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIA   66 (257)
T ss_dssp             GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHH
Confidence            46899987777765543   2211         0123788999999999999875

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.82  E-value=0.00085  Score=50.58  Aligned_cols=43  Identities=16%  Similarity=0.153  Sum_probs=32.1

Q ss_pred             CceeecchhHHHHHHHHhcC------------CCC-CcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSAL------------NDV-DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~------------~~~-~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++.|.+++...            ... .+-|+|..|.|||+||+.+.
T Consensus        15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala   70 (301)
T 3cf0_A           15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA   70 (301)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHH
Confidence            46899998888887766421            111 23788999999999999875

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.79  E-value=0.0009  Score=54.39  Aligned_cols=43  Identities=21%  Similarity=0.286  Sum_probs=33.7

Q ss_pred             CceeecchhHHHHHHHHhcCC----------------CCC-cceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALN----------------DVD-TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~----------------~~~-~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|+++.++.|.++|....                ..+ +-|+|..|+||||||+.+.
T Consensus        39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la   98 (516)
T 1sxj_A           39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVA   98 (516)
T ss_dssp             GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999986410                112 2788999999999999874

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.79  E-value=0.0012  Score=46.17  Aligned_cols=42  Identities=10%  Similarity=-0.084  Sum_probs=25.2

Q ss_pred             ceeecc---hhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           63 FAYGRD---GDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        63 ~vvGrd---~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +++|.+   ...+.+..++.......+-|+|..|+||||||+.+.
T Consensus        29 ~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~   73 (242)
T 3bos_A           29 SYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAAC   73 (242)
T ss_dssp             TSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHH
T ss_pred             hccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence            455532   333444444433222234889999999999999874

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.76  E-value=0.00091  Score=51.76  Aligned_cols=43  Identities=19%  Similarity=0.144  Sum_probs=32.3

Q ss_pred             CceeecchhHHHHHHHHhc----CC--------CCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSA----LN--------DVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~----~~--------~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++.|.+.+..    ..        ...+-|+|..|+|||+||+.+.
T Consensus        84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia  138 (357)
T 3d8b_A           84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIA  138 (357)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHH
T ss_pred             HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHH
Confidence            4689999988888877632    11        1123788999999999999875

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.67  E-value=0.0012  Score=50.09  Aligned_cols=43  Identities=19%  Similarity=0.224  Sum_probs=32.3

Q ss_pred             CceeecchhHHHHHHHHhc---------CCC---CCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSA---------LND---VDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~---------~~~---~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++.|.+.+..         ...   ..+-++|..|+|||+||+.+.
T Consensus        18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia   72 (322)
T 3eie_A           18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVA   72 (322)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHH
T ss_pred             HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence            4799999999988877621         011   123788999999999999875

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.61  E-value=0.0012  Score=53.45  Aligned_cols=43  Identities=16%  Similarity=0.087  Sum_probs=32.1

Q ss_pred             CceeecchhH---HHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDR---NKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~---~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.+   ..|...+.......+-++|..|+||||||+.+.
T Consensus        26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia   71 (447)
T 3pvs_A           26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIA   71 (447)
T ss_dssp             TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHH
T ss_pred             HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHH
Confidence            4688888766   556666655444345888999999999999875

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.58  E-value=0.0023  Score=45.33  Aligned_cols=38  Identities=13%  Similarity=0.118  Sum_probs=26.7

Q ss_pred             cchhHHHHHHHHhcCCCC--Cc-ceEecCCCcHHHHHHhhh
Q 046733           67 RDGDRNKIINRLSALNDV--DT-VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        67 rd~~~~~lv~~L~~~~~~--~~-~IvGmGGiGKTTLA~~Vy  104 (106)
                      |++..+.|++.+......  .+ .|+|..|.|||||++.+.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~   43 (201)
T 1rz3_A            3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLS   43 (201)
T ss_dssp             HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHH
Confidence            344566777777653222  23 999999999999998753

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.58  E-value=0.0021  Score=48.78  Aligned_cols=43  Identities=14%  Similarity=0.111  Sum_probs=32.5

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.+.-++.|...+.......+-++|..|+||||+|+.+.
T Consensus        25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la   67 (340)
T 1sxj_C           25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALA   67 (340)
T ss_dssp             GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHH
Confidence            3578888777777777765433235888999999999999763

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.56  E-value=0.002  Score=48.20  Aligned_cols=43  Identities=16%  Similarity=-0.031  Sum_probs=33.5

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++.|.+++......+. -+.|..|+|||++|+.+.
T Consensus        26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la   69 (324)
T 3u61_B           26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALC   69 (324)
T ss_dssp             TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHH
Confidence            4699999999999988875443333 445779999999999864

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.51  E-value=0.0025  Score=49.53  Aligned_cols=43  Identities=16%  Similarity=0.164  Sum_probs=32.5

Q ss_pred             CceeecchhHHHHHHHHhc----CC--------CCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSA----LN--------DVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~----~~--------~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.+..++.|.+++..    ..        ...+-|+|..|+|||+||+.+.
T Consensus       115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia  169 (389)
T 3vfd_A          115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVA  169 (389)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHH
Confidence            4699999999988887632    11        1123788999999999999874

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.49  E-value=0.0014  Score=49.29  Aligned_cols=41  Identities=17%  Similarity=0.246  Sum_probs=33.0

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++|+++.++.+...+...  ..+-++|..|+|||+||+.+.
T Consensus        27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la   67 (331)
T 2r44_A           27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLA   67 (331)
T ss_dssp             TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHH
T ss_pred             cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHH
Confidence            57899998888887777653  234889999999999999864

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.47  E-value=0.0024  Score=49.50  Aligned_cols=43  Identities=19%  Similarity=0.243  Sum_probs=32.2

Q ss_pred             CceeecchhHHHHHHHHhcC---------C---CCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSAL---------N---DVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~---------~---~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++.|.+.+...         .   ...+-++|..|+|||+||+.+.
T Consensus        51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala  105 (355)
T 2qp9_X           51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVA  105 (355)
T ss_dssp             GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHH
Confidence            46999999888888766310         0   1123788999999999999875

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.45  E-value=0.002  Score=49.07  Aligned_cols=44  Identities=20%  Similarity=0.326  Sum_probs=34.2

Q ss_pred             CceeecchhHHHHHHHHhcCC--CCCcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSALN--DVDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~--~~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ..++|.......+.+.+..-.  ...+-|+|..|+|||++|+.++.
T Consensus         2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~   47 (304)
T 1ojl_A            2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA   47 (304)
T ss_dssp             -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred             CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence            468999999999888875422  22448889999999999998864

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.44  E-value=0.0023  Score=49.00  Aligned_cols=43  Identities=16%  Similarity=0.233  Sum_probs=31.5

Q ss_pred             CceeecchhHHHHHHHHhc---CC-------C--CCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSA---LN-------D--VDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~---~~-------~--~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++.|.+.+..   ..       .  ..+-++|..|+|||+||+.+.
T Consensus        12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala   66 (322)
T 1xwi_A           12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVA   66 (322)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHH
Confidence            4789999888888776531   10       0  123678999999999999875

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.43  E-value=0.0017  Score=46.12  Aligned_cols=34  Identities=18%  Similarity=0.256  Sum_probs=22.7

Q ss_pred             HHHHHHHHhcC-CCCCc-ceEecCCCcHHHHHHhhh
Q 046733           71 RNKIINRLSAL-NDVDT-VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        71 ~~~lv~~L~~~-~~~~~-~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+.|++.+... ....+ .|+|..|.|||||++.+.
T Consensus         8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~   43 (208)
T 3c8u_A            8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLA   43 (208)
T ss_dssp             HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            34455554432 11223 999999999999999764

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.36  E-value=0.0013  Score=49.17  Aligned_cols=43  Identities=12%  Similarity=0.116  Sum_probs=29.7

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.+.-++.+...+.......+-|+|..|+|||+||+.+.
T Consensus        24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la   66 (350)
T 1g8p_A           24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALA   66 (350)
T ss_dssp             GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHH
T ss_pred             hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHH
Confidence            3689988765554433332222235788999999999999875

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.30  E-value=0.0013  Score=45.29  Aligned_cols=18  Identities=28%  Similarity=0.350  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        42 ~l~G~~G~GKTtL~~~i~   59 (180)
T 3ec2_A           42 TFVGSPGVGKTHLAVATL   59 (180)
T ss_dssp             EECCSSSSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            889999999999999875

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.29  E-value=0.0027  Score=48.56  Aligned_cols=43  Identities=23%  Similarity=0.247  Sum_probs=28.9

Q ss_pred             CceeecchhHHHHHHHHhcC----CC-CCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSAL----ND-VDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~----~~-~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.+..++.+-..+...    .. ..+-++|..|+||||||+.+.
T Consensus        25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia   72 (334)
T 1in4_A           25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIA   72 (334)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHH
T ss_pred             HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHH
Confidence            35778776666654444321    11 234899999999999999874

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.29  E-value=0.0041  Score=47.85  Aligned_cols=43  Identities=14%  Similarity=0.350  Sum_probs=31.5

Q ss_pred             CceeecchhHHHHHHHHh----c--------------------------CCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLS----A--------------------------LNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~----~--------------------------~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++|.++.++.|...+.    .                          .....+-++|..|+|||+||+.+.
T Consensus        21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la   93 (376)
T 1um8_A           21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLA   93 (376)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred             hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHH
Confidence            468999988888876652    0                          011234788999999999999874

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.25  E-value=0.0018  Score=45.23  Aligned_cols=20  Identities=25%  Similarity=0.220  Sum_probs=17.6

Q ss_pred             cceEecCCCcHHHHHHhhhc
Q 046733           86 TVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +-|+|..|+|||+||+.++.
T Consensus        57 ~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           57 LYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            38899999999999998763

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.24  E-value=0.0016  Score=48.03  Aligned_cols=43  Identities=19%  Similarity=0.308  Sum_probs=32.3

Q ss_pred             CceeecchhHHHHHHHHhcCC-----C---C-CcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALN-----D---V-DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~-----~---~-~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++|.+..++.|...+....     .   . .+-++|..|+|||+||+.+.
T Consensus        17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la   68 (311)
T 4fcw_A           17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLA   68 (311)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHH
Confidence            468899988888877765321     1   1 23788999999999999864

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.18  E-value=0.002  Score=50.38  Aligned_cols=42  Identities=10%  Similarity=0.022  Sum_probs=33.2

Q ss_pred             ceeecchhHHHHHHHHhc---CCC-CCcceEecCCCcHHHHHHhhh
Q 046733           63 FAYGRDGDRNKIINRLSA---LND-VDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        63 ~vvGrd~~~~~lv~~L~~---~~~-~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+.||+++.+.|...|..   ... ..+-|.|..|.|||++++.|.
T Consensus        21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~   66 (318)
T 3te6_A           21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVM   66 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHH
Confidence            488999999999877743   222 234788999999999999875

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.16  E-value=0.0041  Score=49.73  Aligned_cols=43  Identities=16%  Similarity=0.176  Sum_probs=32.0

Q ss_pred             CceeecchhHHHHHHHHhc----CC--------CCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSA----LN--------DVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~----~~--------~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++.|.+.+..    ..        ...+-++|..|+|||+||+.+.
T Consensus       134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia  188 (444)
T 2zan_A          134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVA  188 (444)
T ss_dssp             GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHH
Confidence            4689999988888877631    11        1123788999999999999875

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.13  E-value=0.006  Score=44.67  Aligned_cols=43  Identities=9%  Similarity=0.080  Sum_probs=29.0

Q ss_pred             CceeecchhHHHHHHH-------HhcCCCC---CcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINR-------LSALNDV---DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~-------L~~~~~~---~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++|.....+.++..       +......   .+-|+|..|+|||+||+.+.
T Consensus        33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia   85 (272)
T 1d2n_A           33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIA   85 (272)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHH
Confidence            4577887776666652       2211111   23788999999999999875

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.13  E-value=0.0023  Score=45.09  Aligned_cols=18  Identities=28%  Similarity=0.390  Sum_probs=16.3

Q ss_pred             cceEecCCCcHHHHHHhh
Q 046733           86 TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~V  103 (106)
                      +.|+|+.|.||||+|+.+
T Consensus        28 i~l~G~~GsGKsTl~~~L   45 (199)
T 3vaa_A           28 IFLTGYMGAGKTTLGKAF   45 (199)
T ss_dssp             EEEECCTTSCHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHH
Confidence            389999999999999976

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.01  E-value=0.0062  Score=46.71  Aligned_cols=42  Identities=12%  Similarity=0.355  Sum_probs=31.3

Q ss_pred             ceeecchhHHHHHHHHhc-------------C--CCCCcceEecCCCcHHHHHHhhh
Q 046733           63 FAYGRDGDRNKIINRLSA-------------L--NDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        63 ~vvGrd~~~~~lv~~L~~-------------~--~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .++|.+..++.|...+..             .  ....+-++|..|+|||++|+.+.
T Consensus        16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia   72 (363)
T 3hws_A           16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA   72 (363)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHH
Confidence            589999888888776620             0  01123788999999999999875

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.94  E-value=0.0045  Score=51.00  Aligned_cols=42  Identities=14%  Similarity=0.184  Sum_probs=33.0

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ..++|.++.++.+...+....  .+-++|..|+|||+||+.+..
T Consensus        22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~   63 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKF   63 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGG
T ss_pred             hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHH
Confidence            578999988888777665432  347889999999999998753

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=95.91  E-value=0.0033  Score=44.26  Aligned_cols=17  Identities=24%  Similarity=0.407  Sum_probs=15.9

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|+.|.|||||++.+
T Consensus        29 ~l~G~sGsGKSTl~~~L   45 (200)
T 3uie_A           29 WVTGLSGSGKSTLACAL   45 (200)
T ss_dssp             EEECSTTSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            89999999999999975

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.90  E-value=0.0034  Score=43.98  Aligned_cols=17  Identities=41%  Similarity=0.667  Sum_probs=15.9

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|+.|.||||||+.+
T Consensus        22 ~l~G~~GsGKSTla~~L   38 (202)
T 3t61_A           22 VVMGVSGSGKSSVGEAI   38 (202)
T ss_dssp             EEECSTTSCHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            88999999999999976

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=95.84  E-value=0.0098  Score=47.46  Aligned_cols=43  Identities=16%  Similarity=0.136  Sum_probs=30.5

Q ss_pred             CceeecchhHHHHHHH---HhcCCCC--CcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINR---LSALNDV--DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~---L~~~~~~--~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++.+..+   +......  .+-++|..|.|||+||+.+-
T Consensus        37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala   84 (456)
T 2c9o_A           37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIA   84 (456)
T ss_dssp             TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHH
Confidence            4799999887765443   3332221  24788999999999999764

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=95.76  E-value=0.0041  Score=43.75  Aligned_cols=18  Identities=28%  Similarity=0.617  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|+.|.|||||++.+.
T Consensus        33 ~l~G~~GsGKSTl~~~L~   50 (200)
T 4eun_A           33 VVMGVSGSGKTTIAHGVA   50 (200)
T ss_dssp             EEECCTTSCHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            899999999999999763

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=95.57  E-value=0.0054  Score=42.35  Aligned_cols=18  Identities=22%  Similarity=0.453  Sum_probs=16.1

Q ss_pred             cceEecCCCcHHHHHHhh
Q 046733           86 TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~V  103 (106)
                      +.|+|+.|.||||+++.+
T Consensus        16 i~l~G~~GsGKsT~~~~L   33 (186)
T 2yvu_A           16 VWLTGLPGSGKTTIATRL   33 (186)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHH
Confidence            478999999999999976

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=95.56  E-value=0.009  Score=48.86  Aligned_cols=43  Identities=14%  Similarity=0.115  Sum_probs=32.7

Q ss_pred             CceeecchhHHHHHHHHhcC-------------CCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSAL-------------NDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~-------------~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.+..++.|.+++...             ....+-|+|..|+|||+||+.+.
T Consensus       204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia  259 (489)
T 3hu3_A          204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA  259 (489)
T ss_dssp             GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHH
Confidence            36899999898888776421             11234788999999999999875

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.55  E-value=0.0054  Score=44.49  Aligned_cols=18  Identities=44%  Similarity=0.508  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|+.|.|||||++.+.
T Consensus        31 ~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           31 VILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=95.50  E-value=0.0065  Score=42.66  Aligned_cols=18  Identities=33%  Similarity=0.410  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.||||||+.+-
T Consensus        25 ~i~G~~GsGKSTl~~~L~   42 (207)
T 2qt1_A           25 GISGVTNSGKTTLAKNLQ   42 (207)
T ss_dssp             EEEESTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            899999999999999863

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.50  E-value=0.011  Score=41.59  Aligned_cols=18  Identities=22%  Similarity=0.355  Sum_probs=15.9

Q ss_pred             cceEecCCCcHHHHHHhh
Q 046733           86 TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~V  103 (106)
                      +.|+|.+|+|||||+..+
T Consensus        41 i~ivG~~gvGKTtl~~~l   58 (226)
T 2hf9_A           41 FDFMGAIGSGKTLLIEKL   58 (226)
T ss_dssp             EEEEESTTSSHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHH
Confidence            389999999999999865

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.49  E-value=0.0055  Score=45.99  Aligned_cols=20  Identities=25%  Similarity=0.174  Sum_probs=17.5

Q ss_pred             cceEecCCCcHHHHHHhhhc
Q 046733           86 TVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +-|+|..|+||||||+.+.+
T Consensus        40 lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           40 IFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            48899999999999998753

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=95.40  E-value=0.011  Score=48.29  Aligned_cols=42  Identities=14%  Similarity=0.329  Sum_probs=30.9

Q ss_pred             CceeecchhHHHHHHHHhcC--------------CCCCcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSAL--------------NDVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~--------------~~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      ..|+|.++.++.|...+...              ...++-++|+.|+||||||+.+
T Consensus        15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~l   70 (444)
T 1g41_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRL   70 (444)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHH
Confidence            47999998888886655221              0113478899999999999975

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.35  E-value=0.0071  Score=42.26  Aligned_cols=17  Identities=24%  Similarity=0.321  Sum_probs=15.7

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|+.|.||||+|+.+
T Consensus        24 ~l~G~~GsGKST~a~~L   40 (201)
T 2cdn_A           24 LLLGPPGAGKGTQAVKL   40 (201)
T ss_dssp             EEECCTTSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            78899999999999975

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=95.34  E-value=0.0068  Score=43.84  Aligned_cols=43  Identities=16%  Similarity=0.231  Sum_probs=28.9

Q ss_pred             CceeecchhHHHHHHHHhc--CC-------C---CCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSA--LN-------D---VDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~--~~-------~---~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.+..+.+....  ..       .   ..+-|+|..|.|||||++.+.
T Consensus        16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~   70 (254)
T 1ixz_A           16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA   70 (254)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHH
T ss_pred             HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHH
Confidence            4688888666666544321  10       0   113789999999999999875

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.32  E-value=0.0097  Score=41.65  Aligned_cols=37  Identities=22%  Similarity=0.188  Sum_probs=23.5

Q ss_pred             cchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733           67 RDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        67 rd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      .++..+.+.+++.......+.|+|.+|+|||||+..+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l   50 (221)
T 2wsm_A           14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERT   50 (221)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHH
T ss_pred             cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHH
Confidence            3444555555443222212389999999999998765

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.31  E-value=0.013  Score=48.12  Aligned_cols=43  Identities=16%  Similarity=0.220  Sum_probs=30.6

Q ss_pred             CceeecchhHHHHHHHHh---cCC-----C----CCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLS---ALN-----D----VDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~---~~~-----~----~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++.+.+.+.   ...     .    ..+-|+|..|.|||+||+.+.
T Consensus        16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia   70 (476)
T 2ce7_A           16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVA   70 (476)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHH
T ss_pred             HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHH
Confidence            469999987777766542   211     0    123688999999999999875

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.28  E-value=0.0076  Score=42.68  Aligned_cols=18  Identities=28%  Similarity=0.420  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        24 ~l~GpnGsGKSTLl~~l~   41 (207)
T 1znw_A           24 VLSGPSAVGKSTVVRCLR   41 (207)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999763

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=95.25  E-value=0.0088  Score=41.82  Aligned_cols=18  Identities=22%  Similarity=0.226  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        29 ~l~G~nGsGKSTll~~l~   46 (231)
T 4a74_A           29 EVFGEFGSGKTQLAHTLA   46 (231)
T ss_dssp             EEEESTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999763

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.25  E-value=0.018  Score=43.98  Aligned_cols=18  Identities=33%  Similarity=0.423  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.||||||+.+.
T Consensus        35 ~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           35 FFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=95.17  E-value=0.0061  Score=41.90  Aligned_cols=19  Identities=21%  Similarity=0.172  Sum_probs=17.2

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .|+|..|.|||||++.+..
T Consensus        40 ~l~G~~G~GKTtL~~~i~~   58 (149)
T 2kjq_A           40 YVWGEEGAGKSHLLQAWVA   58 (149)
T ss_dssp             EEESSSTTTTCHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            8999999999999998753

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.14  E-value=0.0091  Score=44.97  Aligned_cols=18  Identities=28%  Similarity=0.300  Sum_probs=16.2

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      -++|..|+|||+||+.+.
T Consensus        40 Ll~GppGtGKT~la~aiA   57 (293)
T 3t15_A           40 GIWGGKGQGKSFQCELVF   57 (293)
T ss_dssp             EEEECTTSCHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            577999999999999875

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=95.05  E-value=0.01  Score=43.33  Aligned_cols=17  Identities=29%  Similarity=0.237  Sum_probs=15.8

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|.|+.|.||||+|+.+
T Consensus        26 ~I~G~~GSGKST~a~~L   42 (252)
T 1uj2_A           26 GVSGGTASGKSSVCAKI   42 (252)
T ss_dssp             EEECSTTSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            88999999999999975

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.03  E-value=0.0098  Score=42.85  Aligned_cols=18  Identities=39%  Similarity=0.599  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        27 ~lvGpsGsGKSTLl~~L~   44 (218)
T 1z6g_A           27 VICGPSGVGKGTLIKKLL   44 (218)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999763

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=95.01  E-value=0.0099  Score=43.76  Aligned_cols=18  Identities=28%  Similarity=0.364  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|+.|.|||||++.+-
T Consensus        31 ~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           31 TVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999764

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=94.98  E-value=0.011  Score=41.19  Aligned_cols=18  Identities=22%  Similarity=0.324  Sum_probs=16.1

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|.|+.|.||||+|+.+.
T Consensus        19 ~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           19 FVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            888999999999998763

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=94.98  E-value=0.0099  Score=43.81  Aligned_cols=43  Identities=16%  Similarity=0.241  Sum_probs=29.7

Q ss_pred             CceeecchhHHHHHHHHhc--C-------CC---CCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSA--L-------ND---VDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~--~-------~~---~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++++.++...  .       +.   ..+-|+|..|.|||||++.+.
T Consensus        40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~   94 (278)
T 1iy2_A           40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA   94 (278)
T ss_dssp             GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHH
T ss_pred             HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHH
Confidence            4688988777666554321  1       00   123789999999999999875

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=94.94  E-value=0.019  Score=47.27  Aligned_cols=43  Identities=16%  Similarity=0.288  Sum_probs=30.5

Q ss_pred             CceeecchhHHHHHHHH---hcCC---C------CCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRL---SALN---D------VDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L---~~~~---~------~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.+..+.+.+   ....   .      ..+-|+|..|.||||||+++.
T Consensus        31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa   85 (499)
T 2dhr_A           31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA   85 (499)
T ss_dssp             TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHH
T ss_pred             HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHH
Confidence            57999997777776554   2211   0      013789999999999999875

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=94.89  E-value=0.011  Score=42.42  Aligned_cols=17  Identities=35%  Similarity=0.532  Sum_probs=15.3

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .+.|.||+|||||+..+
T Consensus        18 ~~~GkgGvGKTTl~~~L   34 (262)
T 1yrb_A           18 VFVGTAGSGKTTLTGEF   34 (262)
T ss_dssp             EEECSTTSSHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHH
Confidence            68899999999999875

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.86  E-value=0.011  Score=47.36  Aligned_cols=20  Identities=35%  Similarity=0.305  Sum_probs=17.6

Q ss_pred             cceEecCCCcHHHHHHhhhc
Q 046733           86 TVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +-|+|..|+||||||+.+.+
T Consensus       133 lll~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          133 LFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            48899999999999998764

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=94.85  E-value=0.019  Score=47.51  Aligned_cols=41  Identities=15%  Similarity=0.208  Sum_probs=30.5

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.+.-++.+...+...  ..+-|+|..|+||||||+.+.
T Consensus        41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia   81 (604)
T 3k1j_A           41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMA   81 (604)
T ss_dssp             HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHH
T ss_pred             ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHh
Confidence            35889887776665555433  234999999999999999874

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=94.84  E-value=0.011  Score=44.28  Aligned_cols=43  Identities=16%  Similarity=0.124  Sum_probs=29.0

Q ss_pred             CceeecchhHHHHHHHHhc---C-------CC---CCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSA---L-------ND---VDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~---~-------~~---~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .++.|.++.++.|.+.+..   .       +.   ..+-++|..|.||||||+.+.
T Consensus        10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala   65 (274)
T 2x8a_A           10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVA   65 (274)
T ss_dssp             --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence            4688888878777665421   1       00   123789999999999999874

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=94.84  E-value=0.012  Score=42.81  Aligned_cols=17  Identities=29%  Similarity=0.288  Sum_probs=16.0

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|.|..|.|||||++.+
T Consensus        29 gI~G~~GsGKSTl~k~L   45 (245)
T 2jeo_A           29 GVSGGTASGKSTVCEKI   45 (245)
T ss_dssp             EEECSTTSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            99999999999999976

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=94.80  E-value=0.013  Score=41.54  Aligned_cols=18  Identities=17%  Similarity=0.259  Sum_probs=16.3

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|+.|.||||+++.+.
T Consensus        29 ~~~G~~GsGKsT~~~~l~   46 (211)
T 1m7g_A           29 WLTGLSASGKSTLAVELE   46 (211)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            889999999999999763

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=94.79  E-value=0.014  Score=39.92  Aligned_cols=19  Identities=37%  Similarity=0.543  Sum_probs=17.4

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .|+|..|.|||||..+++.
T Consensus        30 ~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           30 AIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEECTTSSHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            8999999999999998864

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=94.79  E-value=0.024  Score=45.40  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=25.7

Q ss_pred             ecchhHHHHHHHHhcC---CCC-CcceEecCCCcHHHHHHhhh
Q 046733           66 GRDGDRNKIINRLSAL---NDV-DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        66 Grd~~~~~lv~~L~~~---~~~-~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..+.-++++++.|...   ... .+.|+|+.|.|||||++.+.
T Consensus         3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A            3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHH
Confidence            3445566666666321   111 23889999999999998753

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=94.72  E-value=0.013  Score=45.22  Aligned_cols=18  Identities=17%  Similarity=0.182  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        94 gI~G~sGsGKSTL~~~L~  111 (312)
T 3aez_A           94 GVAGSVAVGKSTTARVLQ  111 (312)
T ss_dssp             EEECCTTSCHHHHHHHHH
T ss_pred             EEECCCCchHHHHHHHHH
Confidence            999999999999999864

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=94.70  E-value=0.014  Score=40.58  Aligned_cols=17  Identities=18%  Similarity=0.087  Sum_probs=15.8

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|.+|.|||||+..+
T Consensus        24 ~i~G~~GsGKTtl~~~l   40 (220)
T 2cvh_A           24 QVYGPYASGKTTLALQT   40 (220)
T ss_dssp             EEECSTTSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            89999999999999875

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=94.68  E-value=0.012  Score=44.54  Aligned_cols=18  Identities=28%  Similarity=0.486  Sum_probs=16.0

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      -|.|+.|.||||||+.+.
T Consensus        37 vl~G~sGsGKSTla~~L~   54 (287)
T 1gvn_B           37 LLGGQPGSGKTSLRSAIF   54 (287)
T ss_dssp             EEECCTTSCTHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            778999999999999863

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=94.64  E-value=0.014  Score=43.76  Aligned_cols=18  Identities=39%  Similarity=0.484  Sum_probs=16.5

Q ss_pred             cceEecCCCcHHHHHHhh
Q 046733           86 TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~V  103 (106)
                      +.|+|+.|.||||+++.+
T Consensus        51 i~l~G~~GsGKSTl~~~L   68 (250)
T 3nwj_A           51 MYLVGMMGSGKTTVGKIM   68 (250)
T ss_dssp             EEEECSTTSCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            489999999999999976

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=94.55  E-value=0.017  Score=42.19  Aligned_cols=18  Identities=28%  Similarity=0.368  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        34 ~iiG~nGsGKSTLl~~l~   51 (224)
T 2pcj_A           34 SIIGASGSGKSTLLYILG   51 (224)
T ss_dssp             EEEECTTSCHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999764

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=94.52  E-value=0.016  Score=42.72  Aligned_cols=18  Identities=33%  Similarity=0.379  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        35 ~iiG~nGsGKSTLl~~l~   52 (235)
T 3tif_A           35 SIMGPSGSGKSTMLNIIG   52 (235)
T ss_dssp             EEECSTTSSHHHHHHHHT
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            999999999999999764

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=94.50  E-value=0.017  Score=40.15  Aligned_cols=18  Identities=22%  Similarity=0.353  Sum_probs=16.2

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        27 ~i~G~~GsGKTtl~~~l~   44 (235)
T 2w0m_A           27 ALTGEPGTGKTIFSLHFI   44 (235)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHHH
Confidence            899999999999998753

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=94.49  E-value=0.01  Score=43.55  Aligned_cols=17  Identities=24%  Similarity=0.415  Sum_probs=15.7

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|+|+.|.||||+|+.+
T Consensus        36 ~l~G~~GsGKSTla~~L   52 (253)
T 2p5t_B           36 LLGGQSGAGKTTIHRIK   52 (253)
T ss_dssp             EEESCGGGTTHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            78899999999999975

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=94.41  E-value=0.022  Score=48.03  Aligned_cols=43  Identities=14%  Similarity=0.219  Sum_probs=32.8

Q ss_pred             CceeecchhHHHHHHHHhcCCC--C-------CcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALND--V-------DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~--~-------~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++|.+..++.|...+.....  .       .+-++|..|+|||+||+.+.
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala  542 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA  542 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHH
T ss_pred             CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHH
Confidence            4699999989888887753221  1       13678999999999999875

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=94.39  E-value=0.018  Score=41.45  Aligned_cols=18  Identities=28%  Similarity=0.364  Sum_probs=16.2

Q ss_pred             cceEecCCCcHHHHHHhh
Q 046733           86 TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~V  103 (106)
                      +.|.|+.|.||||+|+.+
T Consensus        19 I~l~G~~GsGKsT~a~~L   36 (233)
T 1ak2_A           19 AVLLGPPGAGKGTQAPKL   36 (233)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            388899999999999976

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=94.33  E-value=0.023  Score=41.23  Aligned_cols=18  Identities=22%  Similarity=0.126  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        26 ~liG~nGsGKSTLl~~l~   43 (208)
T 3b85_A           26 FGLGPAGSGKTYLAMAKA   43 (208)
T ss_dssp             EEECCTTSSTTHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=94.32  E-value=0.02  Score=43.49  Aligned_cols=18  Identities=22%  Similarity=0.241  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        84 gI~G~~GsGKSTl~~~L~  101 (308)
T 1sq5_A           84 SIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             EEEECTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999763

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=94.25  E-value=0.016  Score=48.41  Aligned_cols=44  Identities=18%  Similarity=0.118  Sum_probs=30.5

Q ss_pred             CceeecchhHHHHHHHHhcCCC-----------CCcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSALND-----------VDTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~-----------~~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +.++|.++-++.|.-.|.....           .++-++|..|+|||+||+.+..
T Consensus       295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~  349 (595)
T 3f9v_A          295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISR  349 (595)
T ss_dssp             STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSST
T ss_pred             chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHH
Confidence            5688988766666544443310           0347889999999999998753

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=94.23  E-value=0.019  Score=44.13  Aligned_cols=18  Identities=28%  Similarity=0.619  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|.+|.|||||++.+.
T Consensus       106 ~lvG~nGsGKTTll~~La  123 (304)
T 1rj9_A          106 LVVGVNGVGKTTTIAKLG  123 (304)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            899999999999998763

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=94.23  E-value=0.021  Score=41.75  Aligned_cols=18  Identities=17%  Similarity=0.370  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        20 ~l~GpsGsGKSTLlk~L~   37 (219)
T 1s96_A           20 IVSAPSGAGKSSLIQALL   37 (219)
T ss_dssp             EEECCTTSCHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999764

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=94.21  E-value=0.012  Score=42.15  Aligned_cols=18  Identities=28%  Similarity=0.407  Sum_probs=12.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        31 ~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           31 VLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             EEECSCC----CHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            899999999999999875

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=94.20  E-value=0.02  Score=42.17  Aligned_cols=18  Identities=28%  Similarity=0.442  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        35 ~i~G~nGsGKSTLl~~l~   52 (237)
T 2cbz_A           35 AVVGQVGCGKSSLLSALL   52 (237)
T ss_dssp             EEECSTTSSHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=94.19  E-value=0.021  Score=40.24  Aligned_cols=17  Identities=18%  Similarity=0.213  Sum_probs=15.8

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|..|.|||||+..+
T Consensus        28 ~i~G~~GsGKTtl~~~l   44 (243)
T 1n0w_A           28 EMFGEFRTGKTQICHTL   44 (243)
T ss_dssp             EEECCTTSSHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHH
Confidence            89999999999999875

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.16  E-value=0.042  Score=37.22  Aligned_cols=31  Identities=23%  Similarity=0.373  Sum_probs=21.5

Q ss_pred             HHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           73 KIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        73 ~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++.+ +......++.|+|..|+|||||...+.
T Consensus         7 ~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~   37 (187)
T 1zj6_A            7 RIWR-LFNHQEHKVIIVGLDNAGKTTILYQFS   37 (187)
T ss_dssp             HHHH-HHTTSCEEEEEEESTTSSHHHHHHHHH
T ss_pred             HHHH-hcCCCccEEEEECCCCCCHHHHHHHHh
Confidence            4444 333222245999999999999998764

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=94.14  E-value=0.021  Score=42.76  Aligned_cols=18  Identities=33%  Similarity=0.495  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        36 ~liG~nGsGKSTLlk~l~   53 (262)
T 1b0u_A           36 SIIGSSGSGKSTFLRCIN   53 (262)
T ss_dssp             EEECCTTSSHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=94.12  E-value=0.021  Score=42.44  Aligned_cols=18  Identities=33%  Similarity=0.492  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        37 ~liG~nGsGKSTLlk~l~   54 (257)
T 1g6h_A           37 LIIGPNGSGKSTLINVIT   54 (257)
T ss_dssp             EEECSTTSSHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.11  E-value=0.022  Score=41.99  Aligned_cols=18  Identities=28%  Similarity=0.512  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        36 ~l~G~nGsGKSTLl~~l~   53 (240)
T 1ji0_A           36 TLIGANGAGKTTTLSAIA   53 (240)
T ss_dssp             EEECSTTSSHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=94.09  E-value=0.022  Score=42.28  Aligned_cols=18  Identities=39%  Similarity=0.503  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        28 ~liG~nGsGKSTLl~~l~   45 (240)
T 2onk_A           28 VLLGPTGAGKSVFLELIA   45 (240)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=94.08  E-value=0.023  Score=42.13  Aligned_cols=18  Identities=28%  Similarity=0.392  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        33 ~l~G~nGsGKSTLlk~l~   50 (250)
T 2d2e_A           33 ALMGPNGAGKSTLGKILA   50 (250)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999875

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=94.08  E-value=0.022  Score=42.89  Aligned_cols=18  Identities=28%  Similarity=0.495  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        41 ~liG~nGsGKSTLl~~l~   58 (266)
T 4g1u_C           41 AIIGPNGAGKSTLLRLLT   58 (266)
T ss_dssp             EEECCTTSCHHHHHHHHT
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            999999999999999864

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=94.08  E-value=0.026  Score=39.04  Aligned_cols=18  Identities=28%  Similarity=0.506  Sum_probs=16.3

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|+|||||.+.+.
T Consensus        33 ~lvG~~g~GKSTLl~~l~   50 (191)
T 1oix_A           33 VLIGDSGVGKSNLLSRFT   50 (191)
T ss_dssp             EEEECTTSSHHHHHHHHH
T ss_pred             EEECcCCCCHHHHHHHHh
Confidence            899999999999998753

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=94.05  E-value=0.023  Score=41.89  Aligned_cols=18  Identities=22%  Similarity=0.366  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        32 ~i~G~nGsGKSTLl~~l~   49 (243)
T 1mv5_A           32 AFAGPSGGGKSTIFSLLE   49 (243)
T ss_dssp             EEECCTTSSHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=94.03  E-value=0.024  Score=43.23  Aligned_cols=17  Identities=29%  Similarity=0.532  Sum_probs=15.6

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|.+|.||||++..+
T Consensus       109 ~lvG~~GsGKTTl~~~L  125 (296)
T 2px0_A          109 VLFGSTGAGKTTTLAKL  125 (296)
T ss_dssp             EEEESTTSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            89999999999999875

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=94.02  E-value=0.022  Score=43.20  Aligned_cols=18  Identities=33%  Similarity=0.650  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        38 ~iiGpnGsGKSTLl~~l~   55 (275)
T 3gfo_A           38 AILGGNGVGKSTLFQNFN   55 (275)
T ss_dssp             EEECCTTSSHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999864

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=94.02  E-value=0.025  Score=39.48  Aligned_cols=18  Identities=22%  Similarity=0.305  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        37 ~L~G~nGaGKTTLlr~l~   54 (158)
T 1htw_A           37 YLNGDLGAGKTTLTRGML   54 (158)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=94.00  E-value=0.024  Score=41.47  Aligned_cols=18  Identities=28%  Similarity=0.329  Sum_probs=16.2

Q ss_pred             cceEecCCCcHHHHHHhh
Q 046733           86 TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~V  103 (106)
                      +.|.|+.|+||||+|+.+
T Consensus        32 I~l~G~~GsGKsT~a~~L   49 (243)
T 3tlx_A           32 YIFLGAPGSGKGTQSLNL   49 (243)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            388899999999999976

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.00  E-value=0.027  Score=37.64  Aligned_cols=20  Identities=25%  Similarity=0.542  Sum_probs=17.1

Q ss_pred             CcceEecCCCcHHHHHHhhh
Q 046733           85 DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++.|+|..|+|||||...+.
T Consensus        20 ~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           20 RILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             EEEEEEETTSSHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            44999999999999998754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=93.99  E-value=0.024  Score=41.49  Aligned_cols=18  Identities=28%  Similarity=0.407  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        38 ~i~G~nGsGKSTLl~~l~   55 (229)
T 2pze_A           38 AVAGSTGAGKTSLLMMIM   55 (229)
T ss_dssp             EEECCTTSSHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=93.99  E-value=0.048  Score=37.83  Aligned_cols=20  Identities=20%  Similarity=0.393  Sum_probs=17.2

Q ss_pred             CcceEecCCCcHHHHHHhhh
Q 046733           85 DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++.|+|..|+|||||...+.
T Consensus        27 ki~lvG~~~vGKSsLi~~l~   46 (198)
T 1f6b_A           27 KLVFLGLDNAGKTTLLHMLK   46 (198)
T ss_dssp             EEEEEEETTSSHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            34999999999999998764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=93.97  E-value=0.026  Score=42.36  Aligned_cols=17  Identities=35%  Similarity=0.519  Sum_probs=15.7

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|.|+.|.||||+|+.+
T Consensus        79 ~I~G~~GSGKSTva~~L   95 (281)
T 2f6r_A           79 GLTGISGSGKSSVAQRL   95 (281)
T ss_dssp             EEEECTTSCHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            88999999999999875

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=93.97  E-value=0.021  Score=44.06  Aligned_cols=17  Identities=29%  Similarity=0.403  Sum_probs=16.0

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|..|.|||||++.+
T Consensus       174 ~IvG~nGsGKSTLlk~L  190 (365)
T 1lw7_A          174 AILGGESSGKSVLVNKL  190 (365)
T ss_dssp             EEECCTTSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            89999999999999975

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=93.95  E-value=0.022  Score=41.00  Aligned_cols=18  Identities=28%  Similarity=0.287  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|.|..|.|||||++.+.
T Consensus        24 ~i~G~~GsGKSTl~~~L~   41 (230)
T 2vp4_A           24 LIEGNIGSGKTTYLNHFE   41 (230)
T ss_dssp             EEECSTTSCHHHHHHTTG
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            899999999999999864

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=93.94  E-value=0.024  Score=42.68  Aligned_cols=18  Identities=33%  Similarity=0.385  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        49 ~i~G~nGsGKSTLlk~l~   66 (271)
T 2ixe_A           49 ALVGPNGSGKSTVAALLQ   66 (271)
T ss_dssp             EEECSTTSSHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999874

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=93.94  E-value=0.025  Score=42.44  Aligned_cols=18  Identities=28%  Similarity=0.405  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        50 ~l~G~NGsGKSTLlk~l~   67 (267)
T 2zu0_C           50 AIMGPNGSGKSTLSATLA   67 (267)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999875

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=93.93  E-value=0.025  Score=41.41  Aligned_cols=18  Identities=33%  Similarity=0.495  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        39 ~iiG~NGsGKSTLlk~l~   56 (214)
T 1sgw_A           39 NFHGPNGIGKTTLLKTIS   56 (214)
T ss_dssp             EEECCTTSSHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=93.93  E-value=0.024  Score=42.02  Aligned_cols=18  Identities=44%  Similarity=0.409  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        39 ~i~G~nGsGKSTLl~~l~   56 (247)
T 2ff7_A           39 GIVGRSGSGKSTLTKLIQ   56 (247)
T ss_dssp             EEECSTTSSHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.89  E-value=0.04  Score=44.84  Aligned_cols=43  Identities=14%  Similarity=0.205  Sum_probs=31.0

Q ss_pred             CceeecchhHHHHHHHHh----cCC---------CCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLS----ALN---------DVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~----~~~---------~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+|.|.++.++.|.+.+.    .+.         ...+-++|..|.|||.||++|-
T Consensus       181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA  236 (434)
T 4b4t_M          181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACA  236 (434)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHH
Confidence            468899998888876542    211         0123677999999999999873

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=93.87  E-value=0.028  Score=41.46  Aligned_cols=18  Identities=28%  Similarity=0.429  Sum_probs=16.1

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||+..+.
T Consensus        34 ~i~G~~GsGKTtl~~~l~   51 (279)
T 1nlf_A           34 ALVSPGGAGKSMLALQLA   51 (279)
T ss_dssp             EEEESTTSSHHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHHH
Confidence            899999999999998753

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=93.86  E-value=0.048  Score=44.77  Aligned_cols=43  Identities=21%  Similarity=0.237  Sum_probs=30.3

Q ss_pred             CceeecchhHHHHHHHHhc----CCC-CC-cceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSA----LND-VD-TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~----~~~-~~-~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++-+..+.+.+..    ... .. +-++|..|+||||||+.+.
T Consensus        81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia  129 (543)
T 3m6a_A           81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIA  129 (543)
T ss_dssp             HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHH
Confidence            3688998877777554421    111 12 2788999999999999874

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=93.85  E-value=0.026  Score=42.21  Aligned_cols=18  Identities=39%  Similarity=0.601  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        50 ~i~G~nGsGKSTLl~~l~   67 (260)
T 2ghi_A           50 ALVGHTGSGKSTIAKLLY   67 (260)
T ss_dssp             EEECSTTSSHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999874

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=93.84  E-value=0.029  Score=37.93  Aligned_cols=19  Identities=37%  Similarity=0.641  Sum_probs=16.6

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|.+|+|||||...+.
T Consensus        24 i~vvG~~~~GKSsli~~l~   42 (190)
T 3con_A           24 LVVVGAGGVGKSALTIQLI   42 (190)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHH
Confidence            4899999999999998764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=93.84  E-value=0.026  Score=42.25  Aligned_cols=18  Identities=22%  Similarity=0.388  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        37 ~liG~nGsGKSTLl~~i~   54 (266)
T 2yz2_A           37 LVAGNTGSGKSTLLQIVA   54 (266)
T ss_dssp             EEECSTTSSHHHHHHHHT
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            899999999999999864

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=93.83  E-value=0.029  Score=41.57  Aligned_cols=17  Identities=18%  Similarity=0.343  Sum_probs=15.8

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|..|+|||||++.+
T Consensus        39 ~i~G~~G~GKTTl~~~i   55 (296)
T 1cr0_A           39 MVTSGSGMGKSTFVRQQ   55 (296)
T ss_dssp             EEEESTTSSHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHH
Confidence            89999999999999875

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=93.79  E-value=0.027  Score=42.46  Aligned_cols=18  Identities=28%  Similarity=0.523  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        54 ~liG~NGsGKSTLlk~l~   71 (263)
T 2olj_A           54 VVIGPSGSGKSTFLRCLN   71 (263)
T ss_dssp             EEECCTTSSHHHHHHHHT
T ss_pred             EEEcCCCCcHHHHHHHHH
Confidence            999999999999999864

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.75  E-value=0.053  Score=44.12  Aligned_cols=43  Identities=14%  Similarity=0.105  Sum_probs=30.7

Q ss_pred             CceeecchhHHHHHHHHhc---CC----------CCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSA---LN----------DVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~---~~----------~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+|.|.++.++.|.+.+.-   ..          ...+-++|..|.|||+||++|-
T Consensus       181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA  236 (437)
T 4b4t_L          181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVA  236 (437)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHH
T ss_pred             hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence            4688999888888665531   11          0123677999999999999874

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=93.75  E-value=0.027  Score=43.15  Aligned_cols=18  Identities=33%  Similarity=0.540  Sum_probs=16.2

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus       104 ~lvG~nGsGKTTll~~La  121 (302)
T 3b9q_A          104 MIVGVNGGGKTTSLGKLA  121 (302)
T ss_dssp             EEECCTTSCHHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHHH
Confidence            899999999999998763

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=93.71  E-value=0.052  Score=42.33  Aligned_cols=17  Identities=24%  Similarity=0.249  Sum_probs=15.9

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|.|..|.|||||++.+
T Consensus        96 gI~GpsGSGKSTl~~~L  112 (321)
T 3tqc_A           96 GIAGSVAVGKSTTSRVL  112 (321)
T ss_dssp             EEECCTTSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            99999999999999876

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.71  E-value=0.028  Score=42.10  Aligned_cols=18  Identities=28%  Similarity=0.425  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        45 ~l~G~NGsGKSTLlk~l~   62 (256)
T 1vpl_A           45 GLIGPNGAGKTTTLRIIS   62 (256)
T ss_dssp             EEECCTTSSHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=93.67  E-value=0.029  Score=41.86  Aligned_cols=18  Identities=28%  Similarity=0.433  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~liG~NGsGKSTLlk~l~   47 (249)
T 2qi9_C           30 HLVGPNGAGKSTLLARMA   47 (249)
T ss_dssp             EEECCTTSSHHHHHHHHT
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            899999999999999864

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=93.62  E-value=0.034  Score=37.32  Aligned_cols=20  Identities=40%  Similarity=0.390  Sum_probs=16.8

Q ss_pred             CcceEecCCCcHHHHHHhhh
Q 046733           85 DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++.|+|..|+|||||.+.+.
T Consensus        16 ki~vvG~~~~GKssL~~~l~   35 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIY   35 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            35799999999999997654

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=93.61  E-value=0.03  Score=42.47  Aligned_cols=18  Identities=22%  Similarity=0.551  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        51 ~liG~NGsGKSTLlk~l~   68 (279)
T 2ihy_A           51 ILYGLNGAGKTTLLNILN   68 (279)
T ss_dssp             EEECCTTSSHHHHHHHHT
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            999999999999999864

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=93.59  E-value=0.029  Score=42.75  Aligned_cols=20  Identities=20%  Similarity=0.248  Sum_probs=17.4

Q ss_pred             cceEecCCCcHHHHHHhhhc
Q 046733           86 TVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +-|+|..|+|||+||+.+.+
T Consensus       155 lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          155 LYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            48899999999999998753

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=93.58  E-value=0.06  Score=44.83  Aligned_cols=18  Identities=28%  Similarity=0.628  Sum_probs=16.3

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++++.
T Consensus       297 ~LVGpNGSGKTTLl~~LA  314 (503)
T 2yhs_A          297 LMVGVNGVGKTTTIGKLA  314 (503)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCcccHHHHHHHHH
Confidence            899999999999998764

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.57  E-value=0.064  Score=43.49  Aligned_cols=43  Identities=19%  Similarity=0.200  Sum_probs=31.1

Q ss_pred             CceeecchhHHHHHHHHhc---CC---------C-CCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSA---LN---------D-VDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~---~~---------~-~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .++.|.++.++.|.+.+..   ..         . ..+-++|..|.|||+||++|-
T Consensus       172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA  227 (428)
T 4b4t_K          172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVA  227 (428)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHH
Confidence            4688999988888776531   11         0 123677999999999999873

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=93.51  E-value=0.032  Score=41.59  Aligned_cols=18  Identities=22%  Similarity=0.457  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        35 ~l~G~nGsGKSTLl~~l~   52 (253)
T 2nq2_C           35 AVLGQNGCGKSTLLDLLL   52 (253)
T ss_dssp             EEECCSSSSHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=93.46  E-value=0.034  Score=40.60  Aligned_cols=18  Identities=22%  Similarity=0.599  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|+|||||++.+.
T Consensus        23 vl~GPSGaGKsTL~~~L~   40 (197)
T 3ney_A           23 VLIGASGVGRSHIKNALL   40 (197)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECcCCCCHHHHHHHHH
Confidence            889999999999999764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=93.45  E-value=0.036  Score=42.08  Aligned_cols=19  Identities=32%  Similarity=0.690  Sum_probs=17.3

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||.+.+|
T Consensus        21 I~lvG~nG~GKSTLl~~L~   39 (301)
T 2qnr_A           21 LMVVGESGLGKSTLINSLF   39 (301)
T ss_dssp             EEEEEETTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4899999999999999876

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.42  E-value=0.067  Score=43.32  Aligned_cols=43  Identities=14%  Similarity=0.203  Sum_probs=30.4

Q ss_pred             CceeecchhHHHHHHHHhc----CC---------CCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSA----LN---------DVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~----~~---------~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+|.|.++.++.|.+.+.-    +.         ...+=++|..|.|||.||++|-
T Consensus       148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA  203 (405)
T 4b4t_J          148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVA  203 (405)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHH
Confidence            4688999888888665421    11         1123677999999999999873

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=93.40  E-value=0.075  Score=41.00  Aligned_cols=17  Identities=29%  Similarity=0.534  Sum_probs=15.6

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|.+|+|||||+..+
T Consensus        83 ~i~G~~G~GKSTl~~~L   99 (355)
T 3p32_A           83 GITGVPGVGKSTAIEAL   99 (355)
T ss_dssp             EEECCTTSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            89999999999999865

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=93.38  E-value=0.046  Score=36.68  Aligned_cols=19  Identities=21%  Similarity=0.489  Sum_probs=16.8

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        26 i~v~G~~~~GKSsli~~l~   44 (195)
T 3pqc_A           26 VAFVGRSNVGKSSLLNALF   44 (195)
T ss_dssp             EEEEEBTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4899999999999998764

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=93.36  E-value=0.036  Score=37.53  Aligned_cols=19  Identities=21%  Similarity=0.268  Sum_probs=16.6

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        51 i~vvG~~g~GKSsll~~l~   69 (193)
T 2ged_A           51 IIIAGPQNSGKTSLLTLLT   69 (193)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            3899999999999998754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=93.31  E-value=0.047  Score=36.92  Aligned_cols=19  Identities=16%  Similarity=0.323  Sum_probs=16.9

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        26 i~v~G~~~~GKSsli~~l~   44 (195)
T 1svi_A           26 IALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             EEEEEBTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4899999999999998764

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=93.27  E-value=0.034  Score=44.04  Aligned_cols=18  Identities=33%  Similarity=0.444  Sum_probs=16.0

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      -|+|+.|.||||+|+.+.
T Consensus       262 il~G~pGSGKSTla~~L~  279 (416)
T 3zvl_A          262 VAVGFPGAGKSTFIQEHL  279 (416)
T ss_dssp             EEESCTTSSHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            678999999999999863

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=93.20  E-value=0.033  Score=38.34  Aligned_cols=19  Identities=16%  Similarity=0.240  Sum_probs=16.6

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||.+.+.
T Consensus        29 v~lvG~~g~GKSTLl~~l~   47 (210)
T 1pui_A           29 VAFAGRSNAGKSSALNTLT   47 (210)
T ss_dssp             EEEEECTTSSHHHHHTTTC
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4999999999999998753

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=93.20  E-value=0.044  Score=38.55  Aligned_cols=17  Identities=24%  Similarity=0.426  Sum_probs=15.2

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|.|..|+||||||..+
T Consensus        27 ~i~G~~GsGKTtl~~~~   43 (247)
T 2dr3_A           27 LLSGGPGTGKTIFSQQF   43 (247)
T ss_dssp             EEEECTTSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            88999999999998754

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=93.17  E-value=0.046  Score=42.60  Aligned_cols=20  Identities=30%  Similarity=0.436  Sum_probs=17.7

Q ss_pred             cceEecCCCcHHHHHHhhhc
Q 046733           86 TVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +.|+|..|.|||||.+.+..
T Consensus       178 i~ivG~sGsGKSTll~~l~~  197 (361)
T 2gza_A          178 IVVAGETGSGKTTLMKALMQ  197 (361)
T ss_dssp             EEEEESSSSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            49999999999999998754

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.16  E-value=0.05  Score=44.96  Aligned_cols=43  Identities=14%  Similarity=0.152  Sum_probs=30.2

Q ss_pred             CceeecchhHHHHHHHHh----cCC---------CCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLS----ALN---------DVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~----~~~---------~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+|.|.++.++.|.+.+.    ...         ...+-++|..|.|||+||++|-
T Consensus       209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA  264 (467)
T 4b4t_H          209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVA  264 (467)
T ss_dssp             SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHH
Confidence            368899988888876542    111         0122667999999999999873

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=93.15  E-value=0.029  Score=43.36  Aligned_cols=18  Identities=28%  Similarity=0.632  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        84 aivG~sGsGKSTLl~ll~  101 (306)
T 3nh6_A           84 ALVGPSGAGKSTILRLLF  101 (306)
T ss_dssp             EEESSSCHHHHHHHHHHT
T ss_pred             EEECCCCchHHHHHHHHH
Confidence            999999999999999874

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=93.09  E-value=0.045  Score=45.91  Aligned_cols=43  Identities=16%  Similarity=0.307  Sum_probs=31.7

Q ss_pred             CceeecchhHHHHHHHHhcCC-----CC----CcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALN-----DV----DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~-----~~----~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++|.++.++.|...+....     ..    .+-++|..|+|||+||+.+.
T Consensus       458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la  509 (758)
T 1r6b_X          458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLS  509 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHH
Confidence            468999988888877664211     01    12678999999999999874

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=93.08  E-value=0.041  Score=41.42  Aligned_cols=18  Identities=33%  Similarity=0.604  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        34 ~i~G~NGsGKSTLlk~l~   51 (263)
T 2pjz_A           34 IILGPNGSGKTTLLRAIS   51 (263)
T ss_dssp             EEECCTTSSHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999874

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=93.07  E-value=0.026  Score=38.95  Aligned_cols=20  Identities=20%  Similarity=0.444  Sum_probs=17.2

Q ss_pred             CcceEecCCCcHHHHHHhhh
Q 046733           85 DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++.|+|..|+|||||...+.
T Consensus        31 ki~v~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           31 RILMVGLDAAGKTTILYKLK   50 (192)
T ss_dssp             EEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            34999999999999998763

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=93.04  E-value=0.044  Score=39.41  Aligned_cols=17  Identities=41%  Similarity=0.319  Sum_probs=15.8

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|+.|.||||+++.+
T Consensus        20 ~i~G~~gsGKst~~~~l   36 (236)
T 1q3t_A           20 AIDGPASSGKSTVAKII   36 (236)
T ss_dssp             EEECSSCSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            89999999999999875

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=93.02  E-value=0.053  Score=37.27  Aligned_cols=19  Identities=21%  Similarity=0.483  Sum_probs=16.4

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||.+.+.
T Consensus        23 i~~vG~~~vGKTsLi~~l~   41 (196)
T 3llu_A           23 ILLMGLRRSGKSSIQKVVF   41 (196)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4899999999999988654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=93.02  E-value=0.045  Score=36.10  Aligned_cols=20  Identities=25%  Similarity=0.434  Sum_probs=17.1

Q ss_pred             CcceEecCCCcHHHHHHhhh
Q 046733           85 DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++.|+|..|+|||||...+.
T Consensus        17 ~i~v~G~~~~GKSsli~~l~   36 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFT   36 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            34899999999999998764

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=92.97  E-value=0.042  Score=42.61  Aligned_cols=18  Identities=17%  Similarity=0.370  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus       130 aIvGpsGsGKSTLl~lL~  147 (305)
T 2v9p_A          130 AFIGPPNTGKSMLCNSLI  147 (305)
T ss_dssp             EEECSSSSSHHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            999999999999999864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=92.96  E-value=0.043  Score=41.04  Aligned_cols=18  Identities=22%  Similarity=0.386  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        29 ~i~Gp~GsGKSTll~~l~   46 (261)
T 2eyu_A           29 LVTGPTGSGKSTTIASMI   46 (261)
T ss_dssp             EEECSTTCSHHHHHHHHH
T ss_pred             EEECCCCccHHHHHHHHH
Confidence            999999999999999764

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=92.96  E-value=0.029  Score=48.19  Aligned_cols=42  Identities=19%  Similarity=0.291  Sum_probs=31.5

Q ss_pred             ceeecchhHHHHHHHHhcCC----C-C----CcceEecCCCcHHHHHHhhh
Q 046733           63 FAYGRDGDRNKIINRLSALN----D-V----DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        63 ~vvGrd~~~~~lv~~L~~~~----~-~----~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .++|.+..++.+...+....    . .    .+-|+|..|+|||+||+.+.
T Consensus       559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la  609 (854)
T 1qvr_A          559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLA  609 (854)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHH
Confidence            58999988888877764321    1 1    12778999999999999875

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=92.88  E-value=0.049  Score=41.61  Aligned_cols=18  Identities=28%  Similarity=0.407  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        68 ~i~G~NGsGKSTLlk~l~   85 (290)
T 2bbs_A           68 AVAGSTGAGKTSLLMMIM   85 (290)
T ss_dssp             EEEESTTSSHHHHHHHHT
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            899999999999999874

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=92.78  E-value=0.046  Score=43.22  Aligned_cols=18  Identities=33%  Similarity=0.540  Sum_probs=16.3

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus       161 ~lvG~nGsGKTTll~~La  178 (359)
T 2og2_A          161 MIVGVNGGGKTTSLGKLA  178 (359)
T ss_dssp             EEECCTTSCHHHHHHHHH
T ss_pred             EEEcCCCChHHHHHHHHH
Confidence            899999999999998764

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=92.76  E-value=0.047  Score=42.44  Aligned_cols=17  Identities=29%  Similarity=0.571  Sum_probs=15.8

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|..|.|||||++.+
T Consensus       133 ~lvG~nGaGKTTll~~L  149 (328)
T 3e70_C          133 MFVGFNGSGKTTTIAKL  149 (328)
T ss_dssp             EEECCTTSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            89999999999999875

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=92.74  E-value=0.055  Score=36.19  Aligned_cols=19  Identities=37%  Similarity=0.658  Sum_probs=16.7

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        21 i~v~G~~~~GKSsl~~~l~   39 (183)
T 3kkq_A           21 LVVVGDGGVGKSALTIQFF   39 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4899999999999998754

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=92.64  E-value=0.053  Score=39.54  Aligned_cols=18  Identities=33%  Similarity=0.560  Sum_probs=16.2

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|.|+.|.||||+++.+.
T Consensus        30 ~i~G~~GsGKsT~~~~l~   47 (229)
T 4eaq_A           30 TFEGPEGSGKTTVINEVY   47 (229)
T ss_dssp             EEECCTTSCHHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHHH
Confidence            888999999999999764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=92.64  E-value=0.059  Score=36.66  Aligned_cols=20  Identities=20%  Similarity=0.484  Sum_probs=17.2

Q ss_pred             CcceEecCCCcHHHHHHhhh
Q 046733           85 DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++.|+|..|+|||||...+.
T Consensus        18 ki~ivG~~~vGKSsL~~~l~   37 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLLKQLA   37 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            44999999999999998764

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=92.63  E-value=0.04  Score=40.27  Aligned_cols=18  Identities=22%  Similarity=0.075  Sum_probs=16.0

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|.|.-|.||||+|+.+-
T Consensus        28 ~ieG~~GsGKST~~~~L~   45 (263)
T 1p5z_B           28 SIEGNIAAGKSTFVNILK   45 (263)
T ss_dssp             EEECSTTSSHHHHHTTTG
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            888999999999998753

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=92.62  E-value=0.059  Score=35.76  Aligned_cols=19  Identities=32%  Similarity=0.608  Sum_probs=16.6

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        21 i~v~G~~~~GKSsli~~l~   39 (187)
T 2a9k_A           21 VIMVGSGGVGKSALTLQFM   39 (187)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4899999999999998764

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=92.61  E-value=0.051  Score=41.86  Aligned_cols=17  Identities=29%  Similarity=0.651  Sum_probs=15.6

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|.+|.||||++..+
T Consensus       108 ~ivG~~GsGKTTl~~~L  124 (306)
T 1vma_A          108 MVVGVNGTGKTTSCGKL  124 (306)
T ss_dssp             EEECCTTSSHHHHHHHH
T ss_pred             EEEcCCCChHHHHHHHH
Confidence            89999999999999875

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=92.60  E-value=0.08  Score=42.66  Aligned_cols=17  Identities=35%  Similarity=0.606  Sum_probs=15.4

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|.+|+||||++..+
T Consensus       103 ~ivG~~GvGKTTla~~L  119 (432)
T 2v3c_C          103 LLVGIQGSGKTTTAAKL  119 (432)
T ss_dssp             EEECCSSSSTTHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            89999999999998764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=92.58  E-value=0.062  Score=35.40  Aligned_cols=20  Identities=20%  Similarity=0.333  Sum_probs=17.2

Q ss_pred             CcceEecCCCcHHHHHHhhh
Q 046733           85 DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++.|+|..|+|||||...+.
T Consensus        16 ~i~v~G~~~~GKssli~~l~   35 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFM   35 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            45899999999999998764

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=92.58  E-value=0.1  Score=45.61  Aligned_cols=44  Identities=14%  Similarity=0.107  Sum_probs=30.9

Q ss_pred             CceeecchhHHHHHHHHh----cCCC---C------CcceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLS----ALND---V------DTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~----~~~~---~------~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .+|.|.++.++.|.+++.    .+..   .      .+-++|..|.|||+||++|.+
T Consensus       204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~  260 (806)
T 3cf2_A          204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN  260 (806)
T ss_dssp             GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT
T ss_pred             hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            468899988888876642    2211   0      126779999999999998753

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=92.52  E-value=0.054  Score=37.58  Aligned_cols=18  Identities=28%  Similarity=0.503  Sum_probs=16.2

Q ss_pred             cceEecCCCcHHHHHHhh
Q 046733           86 TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~V  103 (106)
                      +.|+|..|+|||||...+
T Consensus        26 i~vvG~~~vGKSsLi~~l   43 (195)
T 3cbq_A           26 VMLVGESGVGKSTLAGTF   43 (195)
T ss_dssp             EEEECSTTSSHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            389999999999999875

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=92.49  E-value=0.05  Score=37.82  Aligned_cols=19  Identities=32%  Similarity=0.527  Sum_probs=16.3

Q ss_pred             CcceEecCCCcHHHHHHhh
Q 046733           85 DTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~V  103 (106)
                      ++.|+|..|+|||||...+
T Consensus        32 ki~vvG~~~~GKSsLi~~l   50 (204)
T 4gzl_A           32 KCVVVGDGAVGKTCLLISY   50 (204)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            3499999999999999764

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=91.64  E-value=0.023  Score=39.15  Aligned_cols=19  Identities=32%  Similarity=0.527  Sum_probs=16.3

Q ss_pred             CcceEecCCCcHHHHHHhh
Q 046733           85 DTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~V  103 (106)
                      ++.|+|..|+|||||...+
T Consensus        32 ki~v~G~~~~GKSsli~~l   50 (204)
T 3th5_A           32 KCVVVGDGAVGKTCLLISY   50 (204)
Confidence            4589999999999998654

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=92.42  E-value=0.059  Score=36.83  Aligned_cols=19  Identities=32%  Similarity=0.496  Sum_probs=17.3

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .|+|..|.|||||..++++
T Consensus        27 ~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           27 LIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEECCTTSSHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            8999999999999998764

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=92.33  E-value=0.064  Score=41.42  Aligned_cols=19  Identities=32%  Similarity=0.455  Sum_probs=17.1

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|.|||||.+.+.
T Consensus       174 v~i~G~~GsGKTTll~~l~  192 (330)
T 2pt7_A          174 VIVCGGTGSGKTTYIKSIM  192 (330)
T ss_dssp             EEEEESTTSCHHHHHHHGG
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4999999999999999875

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=92.19  E-value=0.061  Score=40.82  Aligned_cols=18  Identities=28%  Similarity=0.479  Sum_probs=15.9

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|.+|.||||++..+.
T Consensus       102 ~i~g~~G~GKTT~~~~la  119 (295)
T 1ls1_A          102 FLVGLQGSGKTTTAAKLA  119 (295)
T ss_dssp             EEECCTTTTHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            788999999999998753

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=92.18  E-value=0.15  Score=37.33  Aligned_cols=19  Identities=32%  Similarity=0.611  Sum_probs=16.9

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.++|..|+|||||...++
T Consensus        42 I~vvG~~g~GKSSLin~l~   60 (270)
T 1h65_A           42 ILVMGKGGVGKSSTVNSII   60 (270)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4899999999999998765

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=92.18  E-value=0.066  Score=42.49  Aligned_cols=18  Identities=28%  Similarity=0.562  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        34 ~llGpsGsGKSTLLr~ia   51 (359)
T 3fvq_A           34 FIIGASGCGKTTLLRCLA   51 (359)
T ss_dssp             EEEESTTSSHHHHHHHHH
T ss_pred             EEECCCCchHHHHHHHHh
Confidence            999999999999999864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=92.16  E-value=0.066  Score=36.58  Aligned_cols=19  Identities=26%  Similarity=0.347  Sum_probs=16.4

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        24 i~vvG~~~vGKTsLi~~l~   42 (187)
T 3c5c_A           24 LAILGRRGAGKSALTVKFL   42 (187)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            4899999999999997653

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=92.15  E-value=0.069  Score=36.28  Aligned_cols=20  Identities=30%  Similarity=0.586  Sum_probs=17.1

Q ss_pred             CcceEecCCCcHHHHHHhhh
Q 046733           85 DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++.|+|..|+|||||...+.
T Consensus        16 ki~v~G~~~~GKSsli~~l~   35 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFM   35 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            45899999999999988753

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=92.11  E-value=0.062  Score=42.82  Aligned_cols=18  Identities=22%  Similarity=0.466  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        58 ~IiGpnGaGKSTLlr~i~   75 (366)
T 3tui_C           58 GVIGASGAGKSTLIRCVN   75 (366)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEEcCCCchHHHHHHHHh
Confidence            999999999999999864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=92.10  E-value=0.068  Score=36.62  Aligned_cols=18  Identities=28%  Similarity=0.174  Sum_probs=15.8

Q ss_pred             cceEecCCCcHHHHHHhh
Q 046733           86 TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~V  103 (106)
                      +.|+|..|+|||||...+
T Consensus        23 i~ivG~~~vGKSsL~~~~   40 (184)
T 3ihw_A           23 VGIVGNLSSGKSALVHRY   40 (184)
T ss_dssp             EEEECCTTSCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            489999999999999754

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=92.09  E-value=0.16  Score=37.21  Aligned_cols=19  Identities=26%  Similarity=0.604  Sum_probs=16.9

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        39 I~lvG~~g~GKSSLin~l~   57 (262)
T 3def_A           39 VLVLGKGGVGKSSTVNSLI   57 (262)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4999999999999998764

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.08  E-value=0.11  Score=42.59  Aligned_cols=43  Identities=16%  Similarity=0.230  Sum_probs=30.5

Q ss_pred             CceeecchhHHHHHHHHh---cCCC----------CCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLS---ALND----------VDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~---~~~~----------~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+|-|.++.++.|.+.+.   ...+          ..+-++|..|.|||.||++|-
T Consensus       182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA  237 (437)
T 4b4t_I          182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVA  237 (437)
T ss_dssp             GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHH
T ss_pred             eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHH
Confidence            468899988888866542   1111          123677999999999999873

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=92.02  E-value=0.077  Score=36.44  Aligned_cols=20  Identities=15%  Similarity=0.366  Sum_probs=17.1

Q ss_pred             CcceEecCCCcHHHHHHhhh
Q 046733           85 DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++.|+|..|+|||||...+.
T Consensus        25 ki~~vG~~~vGKSsli~~l~   44 (190)
T 1m2o_B           25 KLLFLGLDNAGKTTLLHMLK   44 (190)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            34899999999999998754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=91.98  E-value=0.074  Score=35.94  Aligned_cols=19  Identities=21%  Similarity=0.469  Sum_probs=16.7

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        20 i~v~G~~~~GKSsl~~~l~   38 (199)
T 4bas_A           20 VVMCGLDNSGKTTIINQVK   38 (199)
T ss_dssp             EEEECCTTSCHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4899999999999998764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=91.97  E-value=0.084  Score=36.28  Aligned_cols=19  Identities=26%  Similarity=0.378  Sum_probs=16.7

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        27 i~vvG~~~~GKSsli~~l~   45 (201)
T 3oes_A           27 VVILGYRCVGKTSLAHQFV   45 (201)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            4899999999999998764

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=91.96  E-value=0.067  Score=42.81  Aligned_cols=17  Identities=35%  Similarity=0.591  Sum_probs=15.6

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -++|+.|.||||+++.+
T Consensus        43 vlvGlpGsGKSTia~~L   59 (469)
T 1bif_A           43 VMVGLPARGKTYISKKL   59 (469)
T ss_dssp             EEECCTTSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            78899999999999975

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=91.96  E-value=0.12  Score=41.61  Aligned_cols=38  Identities=18%  Similarity=0.200  Sum_probs=24.4

Q ss_pred             ecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733           66 GRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        66 Grd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy  104 (106)
                      |...+...++..+.. ....+ .|+|..|.|||||.+.+.
T Consensus       150 g~~~~~~~~L~~l~~-~~ggii~I~GpnGSGKTTlL~all  188 (418)
T 1p9r_A          150 GMTAHNHDNFRRLIK-RPHGIILVTGPTGSGKSTTLYAGL  188 (418)
T ss_dssp             CCCHHHHHHHHHHHT-SSSEEEEEECSTTSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHH
Confidence            444333444444433 22334 899999999999998764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.96  E-value=0.072  Score=36.38  Aligned_cols=20  Identities=25%  Similarity=0.391  Sum_probs=17.0

Q ss_pred             CcceEecCCCcHHHHHHhhh
Q 046733           85 DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++.|+|..|+|||||...+.
T Consensus        30 ki~v~G~~~vGKSsli~~l~   49 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFL   49 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            34999999999999998754

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=91.96  E-value=0.053  Score=45.19  Aligned_cols=18  Identities=22%  Similarity=0.473  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|+.|.|||||++.+.
T Consensus       373 ~LiG~sGSGKSTLar~La  390 (552)
T 3cr8_A          373 FFTGLSGAGKSTLARALA  390 (552)
T ss_dssp             EEEESSCHHHHHHHHHHH
T ss_pred             EEECCCCChHHHHHHHHH
Confidence            889999999999999863

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=91.96  E-value=0.066  Score=41.35  Aligned_cols=17  Identities=29%  Similarity=0.659  Sum_probs=15.3

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|.+|.||||++..+
T Consensus       109 ~ivG~~G~GKTT~~~~L  125 (320)
T 1zu4_A          109 MLVGVNGTGKTTSLAKM  125 (320)
T ss_dssp             EEESSTTSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            78899999999999865

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=91.95  E-value=0.08  Score=36.10  Aligned_cols=19  Identities=32%  Similarity=0.436  Sum_probs=16.6

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        23 i~~~G~~~~GKssl~~~l~   41 (201)
T 2q3h_A           23 CVLVGDGAVGKTSLVVSYT   41 (201)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4899999999999998754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=91.95  E-value=0.07  Score=36.16  Aligned_cols=19  Identities=26%  Similarity=0.520  Sum_probs=16.6

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        28 i~v~G~~~~GKSsLi~~l~   46 (193)
T 2oil_A           28 VVLIGESGVGKTNLLSRFT   46 (193)
T ss_dssp             EEEESSTTSSHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHh
Confidence            3899999999999998754

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=91.89  E-value=0.067  Score=43.92  Aligned_cols=17  Identities=35%  Similarity=0.591  Sum_probs=15.7

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -++|+.|.||||+|+.+
T Consensus        39 vlvGlpGSGKSTia~~L   55 (520)
T 2axn_A           39 VMVGLPARGKTYISKKL   55 (520)
T ss_dssp             EEECCTTSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            78899999999999976

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=91.88  E-value=0.097  Score=40.90  Aligned_cols=31  Identities=23%  Similarity=0.139  Sum_probs=21.3

Q ss_pred             HHHHHhcCCCC-CcceEecCCCcHHHHHHhhh
Q 046733           74 IINRLSALNDV-DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        74 lv~~L~~~~~~-~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +++.+..-... .+.|+|..|.|||||.+.+.
T Consensus        61 ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~   92 (347)
T 2obl_A           61 AIDGLLTCGIGQRIGIFAGSGVGKSTLLGMIC   92 (347)
T ss_dssp             HHHHHSCEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred             EEEeeeeecCCCEEEEECCCCCCHHHHHHHHh
Confidence            45555322222 33999999999999998763

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=91.86  E-value=0.082  Score=35.62  Aligned_cols=20  Identities=20%  Similarity=0.411  Sum_probs=17.1

Q ss_pred             CcceEecCCCcHHHHHHhhh
Q 046733           85 DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++.|+|..|+|||||...+.
T Consensus        18 ki~v~G~~~~GKSsli~~l~   37 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFA   37 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            34899999999999998754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=91.85  E-value=0.14  Score=38.70  Aligned_cols=18  Identities=28%  Similarity=0.593  Sum_probs=16.2

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|+|||||.+.+.
T Consensus       173 ~l~G~sG~GKSTll~~l~  190 (301)
T 1u0l_A          173 TMAGLSGVGKSSLLNAIN  190 (301)
T ss_dssp             EEECSTTSSHHHHHHHHS
T ss_pred             EEECCCCCcHHHHHHHhc
Confidence            899999999999998763

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=91.85  E-value=0.07  Score=42.18  Aligned_cols=18  Identities=28%  Similarity=0.433  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        45 ~llGpnGsGKSTLLr~ia   62 (355)
T 1z47_A           45 GLLGPSGSGKTTILRLIA   62 (355)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            899999999999999864

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.84  E-value=0.09  Score=35.75  Aligned_cols=19  Identities=21%  Similarity=0.277  Sum_probs=16.5

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        26 i~v~G~~~~GKSsli~~l~   44 (191)
T 3dz8_A           26 LLIIGNSSVGKTSFLFRYA   44 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHh
Confidence            4899999999999998753

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=91.83  E-value=0.07  Score=42.31  Aligned_cols=18  Identities=22%  Similarity=0.396  Sum_probs=16.0

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      -|+|+.|+||||||..+.
T Consensus       127 LI~GpPGsGKTtLAlqlA  144 (331)
T 2vhj_A          127 IVTGKGNSGKTPLVHALG  144 (331)
T ss_dssp             EEECSCSSSHHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHHH
Confidence            788999999999998763

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=91.81  E-value=0.084  Score=35.47  Aligned_cols=20  Identities=20%  Similarity=0.474  Sum_probs=17.3

Q ss_pred             CcceEecCCCcHHHHHHhhh
Q 046733           85 DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++.|+|..|+|||||...+.
T Consensus        20 ~i~v~G~~~~GKssl~~~l~   39 (186)
T 1ksh_A           20 RLLMLGLDNAGKTTILKKFN   39 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            44899999999999998764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=91.80  E-value=0.085  Score=36.00  Aligned_cols=19  Identities=21%  Similarity=0.345  Sum_probs=16.7

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        26 i~vvG~~~~GKSsli~~l~   44 (192)
T 2fg5_A           26 VCLLGDTGVGKSSIVCRFV   44 (192)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHh
Confidence            4899999999999998764

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=91.77  E-value=0.17  Score=40.14  Aligned_cols=18  Identities=17%  Similarity=0.152  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus       173 ~l~G~~GsGKSTl~~~l~  190 (377)
T 1svm_A          173 LFKGPIDSGKTTLAAALL  190 (377)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            899999999999999764

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=91.75  E-value=0.077  Score=39.06  Aligned_cols=17  Identities=24%  Similarity=0.346  Sum_probs=15.3

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|..|.||+|.|+.+
T Consensus        33 ~llGpPGsGKgTqa~~L   49 (217)
T 3umf_A           33 FVLGGPGSGKGTQCEKL   49 (217)
T ss_dssp             EEECCTTCCHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            67799999999999875

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=91.68  E-value=0.082  Score=35.49  Aligned_cols=19  Identities=26%  Similarity=0.464  Sum_probs=16.6

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        18 i~v~G~~~~GKssli~~l~   36 (195)
T 1x3s_A           18 ILIIGESGVGKSSLLLRFT   36 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4899999999999998764

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=91.66  E-value=0.075  Score=42.00  Aligned_cols=18  Identities=22%  Similarity=0.353  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        33 ~llGpnGsGKSTLLr~ia   50 (359)
T 2yyz_A           33 ALLGPSGCGKTTTLLMLA   50 (359)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEEcCCCchHHHHHHHHH
Confidence            899999999999999864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=91.66  E-value=0.088  Score=36.92  Aligned_cols=19  Identities=26%  Similarity=0.310  Sum_probs=16.7

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        31 i~vvG~~~vGKSsLi~~l~   49 (205)
T 1gwn_A           31 IVVVGDSQCGKTALLHVFA   49 (205)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4899999999999998754

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=91.63  E-value=0.099  Score=36.55  Aligned_cols=19  Identities=37%  Similarity=0.503  Sum_probs=16.7

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        37 i~vvG~~~vGKSsli~~l~   55 (214)
T 2j1l_A           37 VVLVGDGGCGKTSLLMVFA   55 (214)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHH
Confidence            4899999999999998764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=91.62  E-value=0.1  Score=35.22  Aligned_cols=19  Identities=26%  Similarity=0.501  Sum_probs=16.8

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        24 i~v~G~~~~GKSsli~~l~   42 (181)
T 2h17_A           24 VIIVGLDNAGKTTILYQFS   42 (181)
T ss_dssp             EEEEEETTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4899999999999998764

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=91.61  E-value=0.077  Score=42.04  Aligned_cols=18  Identities=28%  Similarity=0.519  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        33 ~llGpnGsGKSTLLr~ia   50 (372)
T 1g29_1           33 ILLGPSGCGKTTTLRMIA   50 (372)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCcHHHHHHHHHH
Confidence            899999999999999864

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=91.61  E-value=0.076  Score=42.48  Aligned_cols=18  Identities=39%  Similarity=0.532  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        33 ~llGpsGsGKSTLLr~ia   50 (381)
T 3rlf_A           33 VFVGPSGCGKSTLLRMIA   50 (381)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEEcCCCchHHHHHHHHH
Confidence            999999999999999864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=91.58  E-value=0.1  Score=36.01  Aligned_cols=19  Identities=21%  Similarity=0.476  Sum_probs=16.6

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        28 i~v~G~~~~GKSsLi~~l~   46 (200)
T 2o52_A           28 FLVIGSAGTGKSCLLHQFI   46 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHH
Confidence            4899999999999998764

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=91.57  E-value=0.078  Score=41.95  Aligned_cols=18  Identities=28%  Similarity=0.425  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        33 ~llGpnGsGKSTLLr~ia   50 (362)
T 2it1_A           33 ALLGPSGSGKSTLLYTIA   50 (362)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCchHHHHHHHHh
Confidence            899999999999999864

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=91.53  E-value=0.15  Score=41.14  Aligned_cols=31  Identities=23%  Similarity=0.239  Sum_probs=21.6

Q ss_pred             HHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733           74 IINRLSALNDVDT-VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        74 lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy  104 (106)
                      +++.+..-..... .|+|..|.|||||.+.+.
T Consensus       147 vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Ia  178 (438)
T 2dpy_A          147 AINALLTVGRGQRMGLFAGSGVGKSVLLGMMA  178 (438)
T ss_dssp             HHHHHSCCBTTCEEEEEECTTSSHHHHHHHHH
T ss_pred             EEeeeEEecCCCEEEEECCCCCCHHHHHHHHh
Confidence            4555533222233 999999999999998764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=91.53  E-value=0.086  Score=35.85  Aligned_cols=19  Identities=32%  Similarity=0.492  Sum_probs=16.6

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        26 i~~vG~~~~GKSsl~~~l~   44 (194)
T 3reg_A           26 IVVVGDGAVGKTCLLLAFS   44 (194)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHh
Confidence            4899999999999998754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=91.53  E-value=0.1  Score=39.58  Aligned_cols=18  Identities=22%  Similarity=0.547  Sum_probs=16.3

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .++|..|+|||||.+.+.
T Consensus       169 ~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          169 ILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            889999999999998763

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=91.49  E-value=0.084  Score=35.90  Aligned_cols=19  Identities=26%  Similarity=0.443  Sum_probs=16.5

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        24 i~v~G~~~~GKSsli~~l~   42 (191)
T 2a5j_A           24 YIIIGDTGVGKSCLLLQFT   42 (191)
T ss_dssp             EEEESSTTSSHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHh
Confidence            3899999999999998764

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=91.47  E-value=0.081  Score=42.00  Aligned_cols=18  Identities=33%  Similarity=0.525  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        41 ~llGpnGsGKSTLLr~ia   58 (372)
T 1v43_A           41 VLLGPSGCGKTTTLRMIA   58 (372)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCChHHHHHHHHH
Confidence            999999999999999864

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=91.46  E-value=0.093  Score=35.56  Aligned_cols=19  Identities=16%  Similarity=0.407  Sum_probs=16.6

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        24 i~v~G~~~~GKSsli~~l~   42 (190)
T 2h57_A           24 VLCLGLDNSGKTTIINKLK   42 (190)
T ss_dssp             EEEEECTTSSHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4899999999999998753

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=91.45  E-value=0.091  Score=40.79  Aligned_cols=18  Identities=22%  Similarity=0.226  Sum_probs=16.1

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||+..+.
T Consensus       135 ~I~G~~GsGKTTL~~~l~  152 (349)
T 1pzn_A          135 EVFGEFGSGKTQLAHTLA  152 (349)
T ss_dssp             EEEESTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            899999999999998753

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=91.41  E-value=0.091  Score=42.67  Aligned_cols=19  Identities=32%  Similarity=0.408  Sum_probs=17.2

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|.|||||++.+.
T Consensus       141 v~IvGpnGsGKSTLlr~L~  159 (460)
T 2npi_A          141 VVIVGGSQTGKTSLSRTLC  159 (460)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            3999999999999999875

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=91.40  E-value=0.09  Score=35.74  Aligned_cols=19  Identities=26%  Similarity=0.253  Sum_probs=16.7

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        25 i~v~G~~~~GKSsli~~l~   43 (188)
T 1zd9_A           25 LTLVGLQYSGKTTFVNVIA   43 (188)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4899999999999998764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=91.39  E-value=0.094  Score=37.46  Aligned_cols=19  Identities=37%  Similarity=0.485  Sum_probs=16.8

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        32 i~lvG~~g~GKStlin~l~   50 (239)
T 3lxx_A           32 IVLVGKTGAGKSATGNSIL   50 (239)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHc
Confidence            4899999999999998764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=91.39  E-value=0.095  Score=37.01  Aligned_cols=19  Identities=16%  Similarity=0.282  Sum_probs=16.8

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        32 I~vvG~~~vGKSsLin~l~   50 (228)
T 2qu8_A           32 IILSGAPNVGKSSFMNIVS   50 (228)
T ss_dssp             EEEECSTTSSHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4899999999999998764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=91.38  E-value=0.1  Score=35.40  Aligned_cols=19  Identities=32%  Similarity=0.492  Sum_probs=16.6

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        21 i~v~G~~~~GKssli~~l~   39 (194)
T 2atx_A           21 CVVVGDGAVGKTCLLMSYA   39 (194)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4899999999999998764

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=91.38  E-value=0.22  Score=37.76  Aligned_cols=35  Identities=17%  Similarity=0.233  Sum_probs=24.6

Q ss_pred             hhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733           69 GDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        69 ~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V  103 (106)
                      +..+.+.+.+...+... +-++|..|+|||++|+.+
T Consensus         9 ~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~l   44 (334)
T 1a5t_A            9 PDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL   44 (334)
T ss_dssp             HHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHH
Confidence            44556666665544333 378899999999999865

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=91.36  E-value=0.092  Score=35.54  Aligned_cols=19  Identities=16%  Similarity=0.358  Sum_probs=16.6

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        23 i~v~G~~~~GKSsli~~l~   41 (189)
T 1z06_A           23 IIVIGDSNVGKTCLTYRFC   41 (189)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4899999999999998764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=91.29  E-value=0.094  Score=35.86  Aligned_cols=19  Identities=26%  Similarity=0.562  Sum_probs=16.6

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        29 i~vvG~~~~GKSsLi~~l~   47 (192)
T 2il1_A           29 VIIIGSRGVGKTSLMERFT   47 (192)
T ss_dssp             EEEECSTTSSHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            3899999999999998764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.23  E-value=0.1  Score=36.06  Aligned_cols=19  Identities=32%  Similarity=0.389  Sum_probs=16.6

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        28 i~vvG~~~~GKSsli~~l~   46 (207)
T 2fv8_A           28 LVVVGDGACGKTCLLIVFS   46 (207)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHh
Confidence            4899999999999998754

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=91.22  E-value=0.11  Score=41.53  Aligned_cols=18  Identities=22%  Similarity=0.350  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        51 ~llGpsGsGKSTLLr~ia   68 (390)
T 3gd7_A           51 GLLGRTGSGKSTLLSAFL   68 (390)
T ss_dssp             EEEESTTSSHHHHHHHHH
T ss_pred             EEECCCCChHHHHHHHHh
Confidence            999999999999999874

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=91.18  E-value=0.066  Score=42.12  Aligned_cols=18  Identities=39%  Similarity=0.518  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~llGpnGsGKSTLLr~ia   47 (348)
T 3d31_A           30 VILGPTGAGKTLFLELIA   47 (348)
T ss_dssp             EEECCCTHHHHHHHHHHH
T ss_pred             EEECCCCccHHHHHHHHH
Confidence            899999999999999864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=91.12  E-value=0.11  Score=35.18  Aligned_cols=19  Identities=16%  Similarity=0.256  Sum_probs=16.5

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        25 i~vvG~~~~GKSsli~~l~   43 (189)
T 2gf9_A           25 LLLIGNSSVGKTSFLFRYA   43 (189)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3899999999999998753

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.10  E-value=0.12  Score=36.25  Aligned_cols=19  Identities=26%  Similarity=0.560  Sum_probs=16.5

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        29 i~lvG~~~vGKSsLi~~l~   47 (201)
T 2ew1_A           29 IVLIGNAGVGKTCLVRRFT   47 (201)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHH
Confidence            3899999999999998653

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=91.08  E-value=0.098  Score=37.32  Aligned_cols=19  Identities=32%  Similarity=0.496  Sum_probs=17.5

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .|+|..|.|||||..+|++
T Consensus        27 ~I~G~NgsGKStil~ai~~   45 (203)
T 3qks_A           27 LIIGQNGSGKSSLLDAILV   45 (203)
T ss_dssp             EEECCTTSSHHHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHHHH
Confidence            8999999999999998864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=91.08  E-value=0.094  Score=43.16  Aligned_cols=18  Identities=39%  Similarity=0.486  Sum_probs=16.9

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.++
T Consensus       316 ~i~G~NGsGKSTLlk~l~  333 (538)
T 1yqt_A          316 GIVGPNGIGKTTFVKMLA  333 (538)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999875

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.02  E-value=0.11  Score=35.51  Aligned_cols=19  Identities=21%  Similarity=0.462  Sum_probs=16.7

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        23 i~v~G~~~~GKSsli~~l~   41 (213)
T 3cph_A           23 ILLIGDSGVGKSCLLVRFV   41 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3899999999999998764

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=90.99  E-value=0.21  Score=38.57  Aligned_cols=18  Identities=28%  Similarity=0.416  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        59 ~i~G~~GaGKSTLl~~l~   76 (337)
T 2qm8_A           59 GITGVPGVGKSTTIDALG   76 (337)
T ss_dssp             EEECCTTSCHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999998763

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=90.97  E-value=0.11  Score=35.64  Aligned_cols=19  Identities=21%  Similarity=0.333  Sum_probs=16.7

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        31 i~v~G~~~~GKSsli~~l~   49 (199)
T 2p5s_A           31 IVLAGDAAVGKSSFLMRLC   49 (199)
T ss_dssp             EEEESSTTSSHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHH
Confidence            4899999999999998764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=90.96  E-value=0.17  Score=40.01  Aligned_cols=18  Identities=33%  Similarity=0.560  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|+|||||.+.+.
T Consensus       184 aivG~~gvGKSTLln~l~  201 (439)
T 1mky_A          184 AIVGRPNVGKSTLFNAIL  201 (439)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999998764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=90.94  E-value=0.25  Score=37.88  Aligned_cols=17  Identities=24%  Similarity=0.372  Sum_probs=15.8

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|.+|.|||||+..+
T Consensus        60 ~i~G~~g~GKSTl~~~l   76 (341)
T 2p67_A           60 GVTGTPGAGKSTFLEAF   76 (341)
T ss_dssp             EEEECTTSCHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHH
Confidence            89999999999999875

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=90.94  E-value=0.11  Score=35.86  Aligned_cols=19  Identities=21%  Similarity=0.305  Sum_probs=16.7

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        28 i~vvG~~~~GKSsLi~~l~   46 (217)
T 2f7s_A           28 LLALGDSGVGKTTFLYRYT   46 (217)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHh
Confidence            4899999999999998764

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=90.93  E-value=0.1  Score=41.12  Aligned_cols=16  Identities=31%  Similarity=0.567  Sum_probs=15.0

Q ss_pred             ceEecCCCcHHHHHHh
Q 046733           87 VIVGIGGLGKIVVWKN  102 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~  102 (106)
                      -|+|.||.||||+++.
T Consensus        37 lllG~~~SGKST~~kq   52 (362)
T 1zcb_A           37 LLLGAGESGKSTFLKQ   52 (362)
T ss_dssp             EEECSTTSSHHHHHHH
T ss_pred             EEECCCCCcHHHHHHH
Confidence            7889999999999986

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=90.89  E-value=0.11  Score=42.63  Aligned_cols=18  Identities=33%  Similarity=0.410  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       373 ~ivG~sGsGKSTLl~~l~  390 (582)
T 3b60_A          373 ALVGRSGSGKSTIASLIT  390 (582)
T ss_dssp             EEEECTTSSHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=90.88  E-value=0.1  Score=40.91  Aligned_cols=18  Identities=22%  Similarity=0.386  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       140 ~ivG~~GsGKTTll~~l~  157 (372)
T 2ewv_A          140 LVTGPTGSGKSTTIASMI  157 (372)
T ss_dssp             EEECSSSSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            899999999999998764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=90.86  E-value=0.099  Score=43.21  Aligned_cols=18  Identities=28%  Similarity=0.438  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.++
T Consensus       298 ~i~G~nGsGKSTLl~~l~  315 (538)
T 3ozx_A          298 GILGPNGIGKTTFARILV  315 (538)
T ss_dssp             EEECCTTSSHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999875

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=90.82  E-value=0.12  Score=34.94  Aligned_cols=20  Identities=15%  Similarity=0.400  Sum_probs=17.1

Q ss_pred             CcceEecCCCcHHHHHHhhh
Q 046733           85 DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++.|+|..|+|||||...+.
T Consensus        24 ~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           24 RVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             EEEEEEETTSSHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            44999999999999998753

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=90.77  E-value=0.15  Score=38.15  Aligned_cols=18  Identities=22%  Similarity=0.202  Sum_probs=15.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      -|.|..|.||||+|..+.
T Consensus        62 li~GPPGtGKTt~a~ala   79 (212)
T 1tue_A           62 VFCGPANTGKSYFGMSFI   79 (212)
T ss_dssp             EEESCGGGCHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            788999999999987654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=90.75  E-value=0.12  Score=35.69  Aligned_cols=19  Identities=32%  Similarity=0.431  Sum_probs=16.6

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        32 i~vvG~~~vGKSsli~~l~   50 (201)
T 2hup_A           32 LVLVGDASVGKTCVVQRFK   50 (201)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHh
Confidence            3899999999999998753

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=90.71  E-value=0.058  Score=42.39  Aligned_cols=18  Identities=33%  Similarity=0.414  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        35 ~llGpnGsGKSTLLr~ia   52 (353)
T 1oxx_K           35 GILGPSGAGKTTFMRIIA   52 (353)
T ss_dssp             EEECSCHHHHHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            899999999999999864

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=90.67  E-value=0.11  Score=41.93  Aligned_cols=17  Identities=24%  Similarity=0.517  Sum_probs=15.0

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|.+|+||||++-.+
T Consensus       104 ~ivG~~GvGKTT~a~~L  120 (433)
T 2xxa_A          104 LMAGLQGAGKTTSVGKL  120 (433)
T ss_dssp             EEECSTTSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            78899999999998764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=90.64  E-value=0.14  Score=35.26  Aligned_cols=19  Identities=37%  Similarity=0.405  Sum_probs=16.5

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        28 i~vvG~~~~GKSsli~~l~   46 (201)
T 2gco_A           28 LVIVGDGACGKTCLLIVFS   46 (201)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4899999999999998754

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=90.62  E-value=0.089  Score=40.16  Aligned_cols=17  Identities=29%  Similarity=0.587  Sum_probs=15.2

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .++|.+|.||||++..+
T Consensus       102 ~i~G~~G~GKTT~~~~l  118 (297)
T 1j8m_F          102 MLVGVQGTGKTTTAGKL  118 (297)
T ss_dssp             EEECSSCSSTTHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            78899999999998865

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=90.51  E-value=0.11  Score=42.67  Aligned_cols=18  Identities=39%  Similarity=0.377  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        51 ~LvG~NGaGKSTLlk~l~   68 (538)
T 1yqt_A           51 GIVGPNGTGKSTAVKILA   68 (538)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=90.39  E-value=0.12  Score=39.57  Aligned_cols=19  Identities=32%  Similarity=0.496  Sum_probs=17.4

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .|+|..|.|||||..+||+
T Consensus        27 ~i~G~NGsGKS~lleAi~~   45 (339)
T 3qkt_A           27 LIIGQNGSGKSSLLDAILV   45 (339)
T ss_dssp             EEECCTTSSHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            8999999999999998864

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=90.39  E-value=0.12  Score=42.50  Aligned_cols=18  Identities=28%  Similarity=0.368  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       373 ~ivG~sGsGKSTll~~l~  390 (582)
T 3b5x_A          373 ALVGRSGSGKSTIANLFT  390 (582)
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=90.38  E-value=0.12  Score=40.93  Aligned_cols=17  Identities=29%  Similarity=0.495  Sum_probs=15.7

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|+-|+||||||..+
T Consensus        44 vI~GPTgsGKTtLa~~L   60 (339)
T 3a8t_A           44 VLMGATGTGKSRLSIDL   60 (339)
T ss_dssp             EEECSTTSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            89999999999999875

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=90.38  E-value=0.14  Score=36.92  Aligned_cols=19  Identities=32%  Similarity=0.480  Sum_probs=16.8

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        25 I~lvG~~g~GKStl~n~l~   43 (260)
T 2xtp_A           25 IILVGKTGTGKSAAGNSIL   43 (260)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4999999999999998763

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=90.26  E-value=0.13  Score=41.31  Aligned_cols=18  Identities=33%  Similarity=0.752  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|+|||||.+.++
T Consensus        35 ~lvG~sGaGKSTLln~L~   52 (418)
T 2qag_C           35 MVVGESGLGKSTLINSLF   52 (418)
T ss_dssp             EEECCTTSSHHHHHHHHT
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            899999999999999875

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=90.22  E-value=0.13  Score=36.06  Aligned_cols=19  Identities=26%  Similarity=0.272  Sum_probs=16.6

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        30 i~vvG~~~vGKSsL~~~l~   48 (214)
T 3q3j_B           30 LVLVGDVQCGKTAMLQVLA   48 (214)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHh
Confidence            3899999999999998753

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=90.21  E-value=0.14  Score=35.95  Aligned_cols=17  Identities=24%  Similarity=0.352  Sum_probs=15.0

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|..|+|||+||..+
T Consensus        34 ~i~G~pG~GKT~l~l~~   50 (251)
T 2zts_A           34 LLTGGTGTGKTTFAAQF   50 (251)
T ss_dssp             EEECCTTSSHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHH
Confidence            78899999999999753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=90.07  E-value=0.13  Score=42.55  Aligned_cols=18  Identities=33%  Similarity=0.516  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        29 gLiGpNGaGKSTLlkiL~   46 (538)
T 3ozx_A           29 GVLGKNGVGKTTVLKILA   46 (538)
T ss_dssp             EEECCTTSSHHHHHHHHT
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            999999999999999864

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=90.05  E-value=0.14  Score=39.82  Aligned_cols=17  Identities=29%  Similarity=0.194  Sum_probs=15.5

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|..|+||||||..+
T Consensus        65 ~I~G~pGsGKTtLal~l   81 (349)
T 2zr9_A           65 EIYGPESSGKTTVALHA   81 (349)
T ss_dssp             EEEESTTSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            88999999999998865

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=90.01  E-value=0.11  Score=42.17  Aligned_cols=20  Identities=30%  Similarity=0.518  Sum_probs=17.7

Q ss_pred             cceEecCCCcHHHHHHhhhc
Q 046733           86 TVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +.|+|..|.|||||.+.++-
T Consensus        45 vaLvG~nGaGKSTLln~L~G   64 (427)
T 2qag_B           45 ILCVGETGLGKSTLMDTLFN   64 (427)
T ss_dssp             EEEECSTTSSSHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            48999999999999998753

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=89.97  E-value=0.14  Score=40.25  Aligned_cols=19  Identities=21%  Similarity=0.377  Sum_probs=16.8

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|.|||||.+.+.
T Consensus       126 i~I~GptGSGKTTlL~~l~  144 (356)
T 3jvv_A          126 VLVTGPTGSGKSTTLAAML  144 (356)
T ss_dssp             EEEECSTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3999999999999998763

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=89.95  E-value=0.12  Score=40.28  Aligned_cols=21  Identities=29%  Similarity=0.613  Sum_probs=18.1

Q ss_pred             CcceEecCCCcHHHHHHhhhc
Q 046733           85 DTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ++.|+|..|+|||||...+|.
T Consensus        39 ~I~vvG~~g~GKSTLln~L~~   59 (361)
T 2qag_A           39 TLMVVGESGLGKSTLINSLFL   59 (361)
T ss_dssp             CEEECCCTTSCHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHhC
Confidence            448999999999999998763

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=89.86  E-value=0.089  Score=36.45  Aligned_cols=19  Identities=16%  Similarity=0.205  Sum_probs=16.8

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        32 i~v~G~~~~GKSslin~l~   50 (223)
T 4dhe_A           32 IAFAGRSNAGKSTAINVLC   50 (223)
T ss_dssp             EEEEESCHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHh
Confidence            4899999999999998764

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=89.77  E-value=0.14  Score=42.70  Aligned_cols=17  Identities=18%  Similarity=0.284  Sum_probs=15.5

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|.|+.|.||||+|+.+
T Consensus       400 ~l~GlsGSGKSTiA~~L  416 (573)
T 1m8p_A          400 FLTGYMNSGKDAIARAL  416 (573)
T ss_dssp             EEECSTTSSHHHHHHHH
T ss_pred             EeecCCCCCHHHHHHHH
Confidence            77899999999999976

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=89.70  E-value=0.15  Score=39.28  Aligned_cols=18  Identities=33%  Similarity=0.588  Sum_probs=15.2

Q ss_pred             Cc-ceEecCCCcHHHHHHh
Q 046733           85 DT-VIVGIGGLGKIVVWKN  102 (106)
Q Consensus        85 ~~-~IvGmGGiGKTTLA~~  102 (106)
                      ++ .|.|=||+||||.+-.
T Consensus        49 KVIAIaGKGGVGKTTtavN   67 (314)
T 3fwy_A           49 KVFAVYGKGGIGKSTTSSN   67 (314)
T ss_dssp             EEEEEECSTTSSHHHHHHH
T ss_pred             eEEEEECCCccCHHHHHHH
Confidence            45 8889999999998764

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=89.65  E-value=0.14  Score=35.73  Aligned_cols=18  Identities=44%  Similarity=0.625  Sum_probs=15.9

Q ss_pred             CcceEecCCCcHHHHHHh
Q 046733           85 DTVIVGIGGLGKIVVWKN  102 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~  102 (106)
                      ++.|+|..|+|||||...
T Consensus        17 ki~v~G~~~~GKSsli~~   34 (221)
T 3gj0_A           17 KLVLVGDGGTGKTTFVKR   34 (221)
T ss_dssp             EEEEEECTTSSHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHH
Confidence            348999999999999986

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=89.64  E-value=0.16  Score=41.18  Aligned_cols=17  Identities=24%  Similarity=0.452  Sum_probs=15.8

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|..|.|||||++.+
T Consensus        43 ~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           43 LVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             EEEESTTSSHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHH
Confidence            99999999999999973

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=89.61  E-value=0.15  Score=42.81  Aligned_cols=18  Identities=39%  Similarity=0.486  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       386 ~i~G~NGsGKSTLlk~l~  403 (607)
T 3bk7_A          386 GIVGPNGIGKTTFVKMLA  403 (607)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999875

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=89.57  E-value=0.12  Score=42.48  Aligned_cols=18  Identities=33%  Similarity=0.425  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       371 ~ivG~sGsGKSTll~~l~  388 (578)
T 4a82_A          371 AFVGMSGGGKSTLINLIP  388 (578)
T ss_dssp             EEECSTTSSHHHHHTTTT
T ss_pred             EEECCCCChHHHHHHHHh
Confidence            999999999999998764

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=89.48  E-value=0.25  Score=39.23  Aligned_cols=17  Identities=35%  Similarity=0.386  Sum_probs=15.4

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|.+|.||||++..+
T Consensus        49 li~G~aGTGKT~ll~~~   65 (459)
T 3upu_A           49 TINGPAGTGATTLTKFI   65 (459)
T ss_dssp             EEECCTTSCHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHH
Confidence            88899999999999865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=89.36  E-value=0.15  Score=42.72  Aligned_cols=18  Identities=39%  Similarity=0.399  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       121 ~LiG~NGsGKSTLlkiL~  138 (607)
T 3bk7_A          121 GIVGPNGTGKTTAVKILA  138 (607)
T ss_dssp             EEECCTTSSHHHHHHHHT
T ss_pred             EEECCCCChHHHHHHHHh
Confidence            999999999999999864

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=89.36  E-value=0.16  Score=41.09  Aligned_cols=17  Identities=29%  Similarity=0.550  Sum_probs=15.3

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|.+|.||||++..+
T Consensus       102 ~i~G~~GsGKTT~~~~L  118 (425)
T 2ffh_A          102 FLVGLQGSGKTTTAAKL  118 (425)
T ss_dssp             EEECCTTSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            78899999999999865

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=89.31  E-value=0.12  Score=39.11  Aligned_cols=19  Identities=42%  Similarity=0.699  Sum_probs=17.8

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .|+|..|.|||||..++++
T Consensus        28 ~i~G~NGsGKS~ll~ai~~   46 (322)
T 1e69_A           28 AIVGPNGSGKSNIIDAIKW   46 (322)
T ss_dssp             EEECCTTTCSTHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHHH
Confidence            8999999999999999874

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=89.28  E-value=0.47  Score=34.43  Aligned_cols=19  Identities=32%  Similarity=0.368  Sum_probs=16.6

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        29 i~vvG~~~~GKSSLln~l~   47 (299)
T 2aka_B           29 IAVVGGQSAGKSSVLENFV   47 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            3899999999999998764

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=89.27  E-value=0.14  Score=41.60  Aligned_cols=17  Identities=29%  Similarity=0.571  Sum_probs=15.1

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .++|.+|+||||++..+
T Consensus       101 ~lvG~~GsGKTTt~~kL  117 (433)
T 3kl4_A          101 MLVGVQGSGKTTTAGKL  117 (433)
T ss_dssp             EECCCTTSCHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            78899999999998764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=89.24  E-value=0.16  Score=40.17  Aligned_cols=18  Identities=22%  Similarity=0.540  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|+|||||.+.+.
T Consensus       219 ~lvG~sG~GKSTLln~L~  236 (358)
T 2rcn_A          219 IFAGQSGVGKSSLLNALL  236 (358)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCccHHHHHHHHh
Confidence            899999999999998764

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=89.23  E-value=0.16  Score=43.23  Aligned_cols=17  Identities=29%  Similarity=0.507  Sum_probs=15.7

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|.|+.|.||||+|+.+
T Consensus        56 vLtGlsGSGKSTlAr~L   72 (630)
T 1x6v_B           56 WLTGLSGAGKTTVSMAL   72 (630)
T ss_dssp             EEECSTTSSHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHH
Confidence            78899999999999975

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=89.21  E-value=0.18  Score=41.47  Aligned_cols=19  Identities=26%  Similarity=0.426  Sum_probs=17.0

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|.|||||.+.+.
T Consensus       263 i~I~GptGSGKTTlL~aL~  281 (511)
T 2oap_1          263 AIVVGETASGKTTTLNAIM  281 (511)
T ss_dssp             EEEEESTTSSHHHHHHHHG
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4899999999999998764

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=89.13  E-value=0.14  Score=42.41  Aligned_cols=18  Identities=28%  Similarity=0.442  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       385 ~ivG~sGsGKSTll~~l~  402 (598)
T 3qf4_B          385 ALVGPTGSGKTTIVNLLM  402 (598)
T ss_dssp             EEECCTTSSTTHHHHHHT
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            999999999999999864

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=89.12  E-value=0.16  Score=42.06  Aligned_cols=18  Identities=28%  Similarity=0.368  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus       373 ~ivG~sGsGKSTll~~l~  390 (587)
T 3qf4_A          373 AVLGETGSGKSTLMNLIP  390 (587)
T ss_dssp             EEECSSSSSHHHHHHTTT
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999764

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=89.09  E-value=0.24  Score=38.73  Aligned_cols=19  Identities=26%  Similarity=0.464  Sum_probs=15.2

Q ss_pred             Cc-ceEecCCCcHHHHHHhh
Q 046733           85 DT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        85 ~~-~IvGmGGiGKTTLA~~V  103 (106)
                      ++ -+-|-||+||||+|-.+
T Consensus        19 ~i~~~~gkGGvGKTt~a~~l   38 (348)
T 3io3_A           19 KWIFVGGKGGVGKTTTSSSV   38 (348)
T ss_dssp             SEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEeCCCCCcHHHHHHHH
Confidence            45 56699999999999754

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=89.08  E-value=0.19  Score=36.06  Aligned_cols=19  Identities=26%  Similarity=0.415  Sum_probs=16.4

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|.+|+|||||.....
T Consensus        40 VvlvG~~~vGKSSLl~r~~   58 (211)
T 2g3y_A           40 VVLIGEQGVGKSTLANIFA   58 (211)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3899999999999998753

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=89.08  E-value=0.19  Score=40.16  Aligned_cols=17  Identities=18%  Similarity=0.171  Sum_probs=15.4

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|..|+|||||+..+
T Consensus       182 ~I~G~sGsGKTTLl~~l  198 (400)
T 3lda_A          182 ELFGEFRTGKSQLCHTL  198 (400)
T ss_dssp             EEEESTTSSHHHHHHHH
T ss_pred             EEEcCCCCChHHHHHHH
Confidence            88999999999999854

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=89.05  E-value=0.17  Score=42.60  Aligned_cols=18  Identities=33%  Similarity=0.503  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       382 ~iiG~NGsGKSTLlk~l~  399 (608)
T 3j16_B          382 VMMGENGTGKTTLIKLLA  399 (608)
T ss_dssp             EEESCTTSSHHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            899999999999999875

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=89.04  E-value=0.13  Score=42.54  Aligned_cols=17  Identities=6%  Similarity=-0.084  Sum_probs=15.2

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -+.|+.|.||||+|+.+
T Consensus       399 ~l~GlsGsGKSTIa~~L  415 (511)
T 1g8f_A          399 VLGNSLTVSREQLSIAL  415 (511)
T ss_dssp             EECTTCCSCHHHHHHHH
T ss_pred             EecccCCCCHHHHHHHH
Confidence            66699999999999976

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=88.96  E-value=0.17  Score=39.72  Aligned_cols=19  Identities=32%  Similarity=0.480  Sum_probs=17.6

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .|+|..|.|||||..++++
T Consensus        30 ~i~G~nG~GKstll~ai~~   48 (430)
T 1w1w_A           30 SIIGPNGSGKSNMMDAISF   48 (430)
T ss_dssp             EEECSTTSSHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHh
Confidence            9999999999999998874

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=88.96  E-value=0.3  Score=40.05  Aligned_cols=19  Identities=32%  Similarity=0.405  Sum_probs=16.8

Q ss_pred             CcceEecCCCcHHHHHHhh
Q 046733           85 DTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~V  103 (106)
                      ++.|+|..|.|||||++.+
T Consensus       176 r~~IvG~sG~GKTtLl~~I  194 (422)
T 3ice_A          176 RGLIVAPPKAGKTMLLQNI  194 (422)
T ss_dssp             EEEEECCSSSSHHHHHHHH
T ss_pred             EEEEecCCCCChhHHHHHH
Confidence            3499999999999999865

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=88.95  E-value=0.18  Score=39.03  Aligned_cols=18  Identities=22%  Similarity=0.176  Sum_probs=16.1

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||...+.
T Consensus        78 ~lvG~pgaGKSTLln~L~   95 (349)
T 2www_A           78 GLSGPPGAGKSTFIEYFG   95 (349)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHHH
Confidence            999999999999998753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=88.93  E-value=0.17  Score=42.53  Aligned_cols=18  Identities=33%  Similarity=0.503  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       107 ~LvGpNGaGKSTLLkiL~  124 (608)
T 3j16_B          107 GLVGTNGIGKSTALKILA  124 (608)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCChHHHHHHHHh
Confidence            999999999999999764

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=88.85  E-value=0.19  Score=38.16  Aligned_cols=17  Identities=18%  Similarity=0.163  Sum_probs=15.2

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|..|+||||||..+
T Consensus        72 li~G~pG~GKTtl~l~i   88 (315)
T 3bh0_A           72 LIAARPSMGKTAFALKQ   88 (315)
T ss_dssp             EEECCTTSSHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHH
Confidence            78899999999999864

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=88.84  E-value=0.19  Score=35.23  Aligned_cols=20  Identities=25%  Similarity=0.454  Sum_probs=17.0

Q ss_pred             CcceEecCCCcHHHHHHhhh
Q 046733           85 DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++.|+|..|+|||||...+.
T Consensus        15 ki~v~G~~~vGKSsli~~l~   34 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFT   34 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHh
Confidence            35799999999999998754

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=88.78  E-value=0.2  Score=39.51  Aligned_cols=17  Identities=24%  Similarity=0.200  Sum_probs=15.5

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|..|+||||||..+
T Consensus        65 ~I~GppGsGKSTLal~l   81 (356)
T 3hr8_A           65 EIFGQESSGKTTLALHA   81 (356)
T ss_dssp             EEEESTTSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            88899999999999865

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=88.77  E-value=0.19  Score=41.43  Aligned_cols=18  Identities=22%  Similarity=0.309  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        33 ~liG~nGsGKSTLl~~l~   50 (483)
T 3euj_A           33 TLSGGNGAGKSTTMAGFV   50 (483)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            899999999999998764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=88.71  E-value=0.082  Score=35.86  Aligned_cols=19  Identities=21%  Similarity=0.296  Sum_probs=3.1

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        23 i~v~G~~~~GKssli~~l~   41 (208)
T 2yc2_C           23 VAVVGEATVGKSALISMFT   41 (208)
T ss_dssp             EEEC---------------
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4889999999999987653

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=88.45  E-value=0.2  Score=40.88  Aligned_cols=17  Identities=35%  Similarity=0.620  Sum_probs=15.1

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .++|.+|+||||++..+
T Consensus       104 livG~~G~GKTTt~~kL  120 (443)
T 3dm5_A          104 LMVGIQGSGKTTTVAKL  120 (443)
T ss_dssp             EEECCTTSSHHHHHHHH
T ss_pred             EEECcCCCCHHHHHHHH
Confidence            78899999999998764

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=88.35  E-value=0.25  Score=36.69  Aligned_cols=18  Identities=33%  Similarity=0.503  Sum_probs=16.2

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|.|..|.||||+++.+.
T Consensus        31 ~~eG~~GsGKsT~~~~l~   48 (236)
T 3lv8_A           31 VIEGLEGAGKSTAIQVVV   48 (236)
T ss_dssp             EEEESTTSCHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            888999999999999864

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=88.35  E-value=0.23  Score=37.67  Aligned_cols=17  Identities=24%  Similarity=0.296  Sum_probs=15.4

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|..|+||||||..+
T Consensus       111 ~i~G~~GsGKT~la~~l  127 (324)
T 2z43_A          111 EFFGEFGSGKTQLCHQL  127 (324)
T ss_dssp             EEEESTTSSHHHHHHHH
T ss_pred             EEECCCCCCHhHHHHHH
Confidence            88899999999999864

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=88.35  E-value=0.082  Score=39.17  Aligned_cols=19  Identities=21%  Similarity=0.220  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .|+|..|.|||||..++.+
T Consensus        31 ~i~GpnGsGKSTll~~i~g   49 (227)
T 1qhl_A           31 TLSGGNGAGKSTTMAAFVT   49 (227)
T ss_dssp             HHHSCCSHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHhc
Confidence            7889999999999998754

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=88.22  E-value=0.22  Score=39.11  Aligned_cols=17  Identities=24%  Similarity=0.231  Sum_probs=15.3

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|.+|+||||||..+
T Consensus        67 ~I~G~pGsGKTtLal~l   83 (356)
T 1u94_A           67 EIYGPESSGKTTLTLQV   83 (356)
T ss_dssp             EEECSTTSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            88899999999999764

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=88.18  E-value=0.3  Score=40.53  Aligned_cols=18  Identities=33%  Similarity=0.405  Sum_probs=13.6

Q ss_pred             ceEecCCCcHHHH-HHhhh
Q 046733           87 VIVGIGGLGKIVV-WKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTL-A~~Vy  104 (106)
                      -|.|++|.|||+. +..|+
T Consensus       209 lI~GPPGTGKT~ti~~~I~  227 (646)
T 4b3f_X          209 IIHGPPGTGKTTTVVEIIL  227 (646)
T ss_dssp             EEECCTTSCHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            6889999999964 44443

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=88.12  E-value=0.24  Score=39.82  Aligned_cols=18  Identities=22%  Similarity=0.337  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        73 alvG~nGaGKSTLln~L~   90 (413)
T 1tq4_A           73 AVTGETGSGKSSFINTLR   90 (413)
T ss_dssp             EEEECTTSSHHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            999999999999999864

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=88.09  E-value=0.53  Score=35.99  Aligned_cols=19  Identities=21%  Similarity=0.195  Sum_probs=16.6

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +-++|.+|.|||.||.++-
T Consensus       107 ~~l~GppgtGKt~~a~ala  125 (267)
T 1u0j_A          107 IWLFGPATTGKTNIAEAIA  125 (267)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3788999999999999764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=88.06  E-value=0.25  Score=40.06  Aligned_cols=18  Identities=22%  Similarity=0.399  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|+|||||++.+.
T Consensus       285 ~i~G~~GsGKSTLl~~l~  302 (525)
T 1tf7_A          285 LATGATGTGKTLLVSRFV  302 (525)
T ss_dssp             EEEECTTSSHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHH
Confidence            899999999999999764

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=87.95  E-value=0.24  Score=36.57  Aligned_cols=18  Identities=28%  Similarity=0.314  Sum_probs=16.1

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|.|+.|.||||+++.+.
T Consensus        25 ~~~G~~g~GKst~~~~l~   42 (223)
T 3ld9_A           25 TFEGIDGSGKTTQSHLLA   42 (223)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            778999999999999764

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=87.85  E-value=0.18  Score=37.25  Aligned_cols=18  Identities=28%  Similarity=0.374  Sum_probs=13.2

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|.|+.|.||||+++.+.
T Consensus        29 ~~eG~~GsGKsT~~~~l~   46 (227)
T 3v9p_A           29 TFEGIDGAGKTTHLQWFC   46 (227)
T ss_dssp             EEECCC---CHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            778999999999999864

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=87.84  E-value=0.23  Score=41.01  Aligned_cols=17  Identities=29%  Similarity=0.604  Sum_probs=15.4

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|.+|+||||++..+
T Consensus       105 ~ivG~~GvGKTTl~~kL  121 (504)
T 2j37_W          105 MFVGLQGSGKTTTCSKL  121 (504)
T ss_dssp             EEECSTTSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            88999999999999865

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=87.82  E-value=0.11  Score=40.22  Aligned_cols=18  Identities=33%  Similarity=0.532  Sum_probs=16.2

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|+|||||.+.+.
T Consensus       177 ~lvG~sG~GKSTLln~L~  194 (307)
T 1t9h_A          177 VFAGQSGVGKSSLLNAIS  194 (307)
T ss_dssp             EEEESHHHHHHHHHHHHC
T ss_pred             EEECCCCCCHHHHHHHhc
Confidence            899999999999998763

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=87.69  E-value=0.27  Score=36.87  Aligned_cols=17  Identities=24%  Similarity=0.345  Sum_probs=15.4

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|..|+||||||..+
T Consensus       102 ~i~G~~gsGKT~la~~l  118 (322)
T 2i1q_A          102 EFAGVFGSGKTQIMHQS  118 (322)
T ss_dssp             EEEESTTSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            88899999999999864

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=87.66  E-value=0.44  Score=36.32  Aligned_cols=38  Identities=11%  Similarity=0.031  Sum_probs=25.1

Q ss_pred             ecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733           66 GRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        66 Grd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      |.++-++.|.+.+...+...+-++|..|.||||+|..+
T Consensus         1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~l   38 (305)
T 2gno_A            1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLEL   38 (305)
T ss_dssp             ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHH
Confidence            34455666666665554222377899999999999875

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=87.59  E-value=0.24  Score=38.52  Aligned_cols=18  Identities=33%  Similarity=0.553  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||-.+|+
T Consensus        27 ~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           27 VVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            799999999999998876

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=87.59  E-value=0.24  Score=40.97  Aligned_cols=17  Identities=18%  Similarity=0.266  Sum_probs=15.5

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .+.|+.|.||||+|+.+
T Consensus       376 ~l~G~~GsGKSTia~~L  392 (546)
T 2gks_A          376 WLTGLPCAGKSTIAEIL  392 (546)
T ss_dssp             EEECSTTSSHHHHHHHH
T ss_pred             EccCCCCCCHHHHHHHH
Confidence            77899999999999975

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=87.35  E-value=0.26  Score=39.19  Aligned_cols=17  Identities=24%  Similarity=0.325  Sum_probs=15.3

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|..|+||||||..+
T Consensus       207 iI~G~pG~GKTtl~l~i  223 (454)
T 2r6a_A          207 IVAARPSVGKTAFALNI  223 (454)
T ss_dssp             EEECCTTSCHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            78899999999999865

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=87.30  E-value=0.24  Score=36.88  Aligned_cols=17  Identities=29%  Similarity=0.423  Sum_probs=15.4

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|+|..|+||||||..+
T Consensus        38 lI~GpsGsGKStLA~~L   54 (205)
T 2qmh_A           38 LITGDSGVGKSETALEL   54 (205)
T ss_dssp             EEECCCTTTTHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            78899999999999865

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=87.26  E-value=0.26  Score=38.80  Aligned_cols=19  Identities=32%  Similarity=0.433  Sum_probs=17.6

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .|+|..|.|||||..++|.
T Consensus        30 ~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           30 GIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEECCTTSSHHHHHHHHHH
T ss_pred             EEECCCCCChhHHHHHHHH
Confidence            8999999999999999874

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=87.23  E-value=0.25  Score=37.56  Aligned_cols=17  Identities=35%  Similarity=0.550  Sum_probs=13.7

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -+-|-||+||||+|-.+
T Consensus        18 v~sgKGGvGKTTvA~~L   34 (324)
T 3zq6_A           18 FIGGKGGVGKTTISAAT   34 (324)
T ss_dssp             EEEESTTSSHHHHHHHH
T ss_pred             EEeCCCCchHHHHHHHH
Confidence            34589999999999753

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=87.13  E-value=0.55  Score=36.20  Aligned_cols=17  Identities=29%  Similarity=0.491  Sum_probs=13.7

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -+-|-||+||||+|-.+
T Consensus        30 v~sgKGGvGKTTvA~~L   46 (349)
T 3ug7_A           30 MFGGKGGVGKTTMSAAT   46 (349)
T ss_dssp             EEECSSSTTHHHHHHHH
T ss_pred             EEeCCCCccHHHHHHHH
Confidence            44499999999998753

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=87.08  E-value=0.31  Score=35.76  Aligned_cols=17  Identities=35%  Similarity=0.514  Sum_probs=14.2

Q ss_pred             ceEe---cCCCcHHHHHHhh
Q 046733           87 VIVG---IGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvG---mGGiGKTTLA~~V  103 (106)
                      .|++   -||+||||+|-.+
T Consensus        38 ~v~~~s~KGGvGKTT~a~nL   57 (298)
T 2oze_A           38 VILNNYFKGGVGKSKLSTMF   57 (298)
T ss_dssp             EEEECCSSSSSSHHHHHHHH
T ss_pred             EEEeccCCCCchHHHHHHHH
Confidence            7776   8999999998754

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=86.99  E-value=0.65  Score=34.13  Aligned_cols=18  Identities=44%  Similarity=0.549  Sum_probs=16.2

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||...+.
T Consensus        28 ~vvG~~~~GKSTlln~l~   45 (315)
T 1jwy_B           28 VVVGSQSSGKSSVLENIV   45 (315)
T ss_dssp             EEEECSSSSHHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHHH
Confidence            899999999999998763

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=86.98  E-value=0.11  Score=39.99  Aligned_cols=18  Identities=22%  Similarity=0.370  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.++++
T Consensus        64 ~lvG~NGaGKStLl~aI~   81 (415)
T 4aby_A           64 AFTGETGAGKSIIVDALG   81 (415)
T ss_dssp             EEEESHHHHHHHHTHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            899999999999998875

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=86.86  E-value=0.31  Score=35.15  Aligned_cols=19  Identities=21%  Similarity=0.354  Sum_probs=16.2

Q ss_pred             CcceEecCCCcHHHHHHhh
Q 046733           85 DTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~V  103 (106)
                      ++.|+|-+|+|||+|....
T Consensus        15 KivlvGd~~VGKTsLi~r~   33 (216)
T 4dkx_A           15 KLVFLGEQSVGKTSLITRF   33 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECcCCcCHHHHHHHH
Confidence            3579999999999999864

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=86.81  E-value=0.29  Score=37.60  Aligned_cols=17  Identities=18%  Similarity=0.079  Sum_probs=15.4

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|..|+||||||..+
T Consensus       126 ~I~G~~GsGKTtla~~l  142 (343)
T 1v5w_A          126 EAFGEFRTGKTQLSHTL  142 (343)
T ss_dssp             EEECCTTCTHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            88899999999999864

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=86.78  E-value=0.55  Score=36.61  Aligned_cols=43  Identities=21%  Similarity=0.213  Sum_probs=30.8

Q ss_pred             ceeecchhHHHHHHHHhcCCCC--CcceEecCCCcHHHHHHhhhc
Q 046733           63 FAYGRDGDRNKIINRLSALNDV--DTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        63 ~vvGrd~~~~~lv~~L~~~~~~--~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .++|......++.+.+..-...  .+-|.|-.|+||+++|+.++.
T Consensus       138 ~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~  182 (387)
T 1ny5_A          138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHK  182 (387)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred             hhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHH
Confidence            5677777777776666432222  347889999999999998863

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=86.57  E-value=0.26  Score=35.60  Aligned_cols=17  Identities=29%  Similarity=0.272  Sum_probs=13.3

Q ss_pred             ceE-ecCCCcHHHHHHhh
Q 046733           87 VIV-GIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~Iv-GmGGiGKTTLA~~V  103 (106)
                      .|+ +-||+||||+|-.+
T Consensus        31 ~v~s~kGGvGKTT~a~~L   48 (267)
T 3k9g_A           31 TIASIKGGVGKSTSAIIL   48 (267)
T ss_dssp             EECCSSSSSCHHHHHHHH
T ss_pred             EEEeCCCCchHHHHHHHH
Confidence            444 77999999998754

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=86.30  E-value=0.35  Score=38.33  Aligned_cols=17  Identities=24%  Similarity=0.300  Sum_probs=15.2

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|..|+||||||..+
T Consensus       204 ii~G~pg~GKT~lal~i  220 (444)
T 2q6t_A          204 IIAARPAMGKTAFALTI  220 (444)
T ss_dssp             EEEECTTSCHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHH
Confidence            78899999999999864

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=86.16  E-value=0.33  Score=37.19  Aligned_cols=18  Identities=33%  Similarity=0.471  Sum_probs=16.2

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|+|||||...+.
T Consensus       171 ~lvG~~gvGKSTLin~L~  188 (357)
T 2e87_A          171 VIAGHPNVGKSTLLKALT  188 (357)
T ss_dssp             EEECSTTSSHHHHHHHHC
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999998753

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=86.07  E-value=0.72  Score=34.65  Aligned_cols=19  Identities=26%  Similarity=0.534  Sum_probs=16.5

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus       123 v~~vG~~nvGKSsliN~l~  141 (282)
T 1puj_A          123 ALIIGIPNVGKSTLINRLA  141 (282)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEecCCCchHHHHHHHh
Confidence            3899999999999988753

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=86.03  E-value=0.25  Score=41.19  Aligned_cols=17  Identities=24%  Similarity=0.585  Sum_probs=15.3

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|+|..|.|||||.+.+
T Consensus       352 aIiGpnGsGKSTLl~~i  368 (670)
T 3ux8_A          352 AVTGVSGSGKSTLVNEV  368 (670)
T ss_dssp             EEECSTTSSHHHHHTTT
T ss_pred             EEEeeCCCCHHHHHHHH
Confidence            89999999999999754

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=86.02  E-value=0.29  Score=35.57  Aligned_cols=17  Identities=35%  Similarity=0.620  Sum_probs=13.6

Q ss_pred             ceE-ecCCCcHHHHHHhh
Q 046733           87 VIV-GIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~Iv-GmGGiGKTTLA~~V  103 (106)
                      .|+ +-||+||||+|-.+
T Consensus        22 ~v~s~kGGvGKTT~a~nL   39 (262)
T 2ph1_A           22 AVMSGKGGVGKSTVTALL   39 (262)
T ss_dssp             EEECSSSCTTHHHHHHHH
T ss_pred             EEEcCCCCCCHHHHHHHH
Confidence            555 77999999998754

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=86.02  E-value=0.43  Score=37.00  Aligned_cols=17  Identities=29%  Similarity=0.514  Sum_probs=13.9

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -+-|-||+||||+|-.+
T Consensus        20 ~~sgkGGvGKTt~a~~l   36 (334)
T 3iqw_A           20 FVGGKGGVGKTTTSCSL   36 (334)
T ss_dssp             EEECSTTSSHHHHHHHH
T ss_pred             EEeCCCCccHHHHHHHH
Confidence            45599999999998753

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=85.86  E-value=0.35  Score=37.24  Aligned_cols=18  Identities=28%  Similarity=0.239  Sum_probs=16.2

Q ss_pred             cceEecCCCcHHHHHHhh
Q 046733           86 TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~V  103 (106)
                      ..|+|..|.|||||++.+
T Consensus        38 ~~i~G~~G~GKs~~~~~~   55 (392)
T 4ag6_A           38 WTILAKPGAGKSFTAKML   55 (392)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             eEEEcCCCCCHHHHHHHH
Confidence            389999999999999875

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=85.77  E-value=0.41  Score=35.08  Aligned_cols=17  Identities=24%  Similarity=0.362  Sum_probs=15.1

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|..|.||||||..+
T Consensus        20 li~G~SGaGKStlal~L   36 (181)
T 3tqf_A           20 LITGEANIGKSELSLAL   36 (181)
T ss_dssp             EEEESSSSSHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHH
Confidence            78899999999999764

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=85.67  E-value=0.52  Score=39.08  Aligned_cols=32  Identities=22%  Similarity=0.375  Sum_probs=21.4

Q ss_pred             hHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733           70 DRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        70 ~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy  104 (106)
                      +....+..+..   ..+ -|.|.+|.||||++..+.
T Consensus       193 ~Q~~Av~~~~~---~~~~~I~G~pGTGKTt~i~~l~  225 (574)
T 3e1s_A          193 EQASVLDQLAG---HRLVVLTGGPGTGKSTTTKAVA  225 (574)
T ss_dssp             HHHHHHHHHTT---CSEEEEECCTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHh---CCEEEEEcCCCCCHHHHHHHHH
Confidence            33444444432   234 888999999999988753

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=85.61  E-value=0.41  Score=34.99  Aligned_cols=19  Identities=32%  Similarity=0.485  Sum_probs=16.2

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus       158 i~i~G~~~~GKssli~~~~  176 (332)
T 2wkq_A          158 CVVVGDGAVGKTCLLISYT  176 (332)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHH
Confidence            3899999999999997653

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=85.51  E-value=0.51  Score=36.01  Aligned_cols=17  Identities=29%  Similarity=0.514  Sum_probs=13.6

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -+-|-||+||||+|-.+
T Consensus        23 v~sgkGGvGKTTva~~L   39 (329)
T 2woo_A           23 FVGGKGGVGKTTTSCSL   39 (329)
T ss_dssp             EEECSSSSSHHHHHHHH
T ss_pred             EEeCCCCCcHHHHHHHH
Confidence            44499999999998753

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=85.36  E-value=0.23  Score=44.99  Aligned_cols=21  Identities=33%  Similarity=0.404  Sum_probs=18.4

Q ss_pred             cceEecCCCcHHHHHHhhhcC
Q 046733           86 TVIVGIGGLGKIVVWKNIYWF  106 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy~~  106 (106)
                      +.|||..|.|||||+++++-|
T Consensus      1108 vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A         1108 LALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp             EEEECSTTSSTTSHHHHHTTS
T ss_pred             EEEECCCCChHHHHHHHHhcC
Confidence            499999999999999988643

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=85.24  E-value=0.37  Score=43.49  Aligned_cols=19  Identities=32%  Similarity=0.394  Sum_probs=17.4

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .|||..|.|||||++.++-
T Consensus      1063 ~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A         1063 ALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp             EEECSSSTTHHHHHHHHTT
T ss_pred             EEECCCCCCHHHHHHHHhc
Confidence            9999999999999998753

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=84.88  E-value=0.43  Score=36.37  Aligned_cols=18  Identities=22%  Similarity=0.510  Sum_probs=15.9

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|+|||||...+.
T Consensus       169 ~ivG~~~vGKSsLl~~l~  186 (329)
T 3o47_A          169 LMVGLDAAGKTTILYKLK  186 (329)
T ss_dssp             EEEESTTSSHHHHHHHTC
T ss_pred             EEECCCCccHHHHHHHHh
Confidence            888999999999998753

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=84.61  E-value=0.53  Score=38.83  Aligned_cols=18  Identities=28%  Similarity=0.516  Sum_probs=16.1

Q ss_pred             cceEecCCCcHHHHHHhh
Q 046733           86 TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~V  103 (106)
                      ..|+|..|+|||||++.+
T Consensus       154 ~~i~G~sGvGKTtL~~~l  171 (473)
T 1sky_E          154 IGLFGGAGVGKTVLIQEL  171 (473)
T ss_dssp             EEEECCSSSCHHHHHHHH
T ss_pred             EEEECCCCCCccHHHHHH
Confidence            499999999999999854

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=84.54  E-value=0.78  Score=35.87  Aligned_cols=19  Identities=21%  Similarity=0.293  Sum_probs=16.1

Q ss_pred             Cc-ceEecCCCcHHHHHHhh
Q 046733           85 DT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        85 ~~-~IvGmGGiGKTTLA~~V  103 (106)
                      ++ -|.|..|+||||||..+
T Consensus        47 ~LiiIaG~pG~GKTt~al~i   66 (338)
T 4a1f_A           47 SLVIIGARPSMGKTSLMMNM   66 (338)
T ss_dssp             CEEEEEECTTSCHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHH
Confidence            44 78899999999999865

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=84.36  E-value=0.48  Score=38.00  Aligned_cols=17  Identities=18%  Similarity=0.163  Sum_probs=15.0

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|.+|+||||||..+
T Consensus       201 iIaG~pG~GKTtlal~i  217 (444)
T 3bgw_A          201 LIAARPSMGKTAFALKQ  217 (444)
T ss_dssp             EEEECSSSSHHHHHHHH
T ss_pred             EEEeCCCCChHHHHHHH
Confidence            77799999999999764

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=84.24  E-value=0.34  Score=38.88  Aligned_cols=18  Identities=22%  Similarity=0.268  Sum_probs=16.2

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       161 gLVG~~gAGKSTLL~~Ls  178 (416)
T 1udx_A          161 GLVGYPNAGKSSLLAAMT  178 (416)
T ss_dssp             EEECCGGGCHHHHHHHHC
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            799999999999998764

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=84.16  E-value=0.55  Score=34.97  Aligned_cols=19  Identities=26%  Similarity=0.492  Sum_probs=16.4

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.++|..|+|||||...+.
T Consensus       102 v~~vG~~~vGKSslin~l~  120 (262)
T 3cnl_A          102 VLIVGVPNTGKSTIINKLK  120 (262)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             eEEeCCCCCCHHHHHHHHh
Confidence            3889999999999998754

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=84.14  E-value=0.5  Score=37.73  Aligned_cols=19  Identities=37%  Similarity=0.571  Sum_probs=16.7

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||-+.+-
T Consensus        23 vgiVG~pnaGKSTL~n~Lt   41 (392)
T 1ni3_A           23 TGIVGMPNVGKSTFFRAIT   41 (392)
T ss_dssp             EEEEECSSSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3999999999999998753

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=84.08  E-value=0.35  Score=40.31  Aligned_cols=18  Identities=22%  Similarity=0.333  Sum_probs=16.3

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+-
T Consensus        49 aIvG~nGsGKSTLL~~I~   66 (608)
T 3szr_A           49 AVIGDQSSGKSSVLEALS   66 (608)
T ss_dssp             ECCCCTTSCHHHHHHHHH
T ss_pred             EEECCCCChHHHHHHHHh
Confidence            899999999999998763

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=83.95  E-value=0.44  Score=42.56  Aligned_cols=18  Identities=33%  Similarity=0.431  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       465 ~LiGpNGsGKSTLLk~La  482 (986)
T 2iw3_A          465 GICGPNGCGKSTLMRAIA  482 (986)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999874

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=83.92  E-value=0.5  Score=42.78  Aligned_cols=18  Identities=28%  Similarity=0.479  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|||..|.|||||++++.
T Consensus       448 aivG~sGsGKSTll~ll~  465 (1321)
T 4f4c_A          448 ALVGSSGCGKSTIISLLL  465 (1321)
T ss_dssp             EEEECSSSCHHHHHHHHT
T ss_pred             EEEecCCCcHHHHHHHhc
Confidence            999999999999999864

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=83.85  E-value=0.69  Score=35.87  Aligned_cols=17  Identities=35%  Similarity=0.518  Sum_probs=13.4

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -+-|-||+||||+|-.+
T Consensus        22 v~sgKGGvGKTTvaanL   38 (354)
T 2woj_A           22 FVGGKGGVGKTTSSCSI   38 (354)
T ss_dssp             EEEESTTSSHHHHHHHH
T ss_pred             EEeCCCCCcHHHHHHHH
Confidence            33499999999998753

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=83.64  E-value=0.62  Score=33.86  Aligned_cols=19  Identities=26%  Similarity=0.595  Sum_probs=16.5

Q ss_pred             cceEecC---------CCcHHHHHHhhh
Q 046733           86 TVIVGIG---------GLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmG---------GiGKTTLA~~Vy  104 (106)
                      +.|+|..         |+|||||...+.
T Consensus        22 i~lvG~~~~~~~~~~~~vGKSsLi~~l~   49 (255)
T 3c5h_A           22 ISVVGLSGTEKEKGQCGIGKSCLCNRFV   49 (255)
T ss_dssp             EEEEESCCCTTTTTTCCCSHHHHHHHHH
T ss_pred             EEEECCCccccccCCCCcCHHHHHHHHH
Confidence            3899999         999999998764

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=83.61  E-value=0.52  Score=36.86  Aligned_cols=18  Identities=28%  Similarity=0.434  Sum_probs=16.1

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||...+.
T Consensus       183 ~lvG~~naGKSTLln~L~  200 (364)
T 2qtf_A          183 GIVGYTNSGKTSLFNSLT  200 (364)
T ss_dssp             EEECBTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            799999999999998764

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=83.54  E-value=0.13  Score=35.29  Aligned_cols=18  Identities=22%  Similarity=0.488  Sum_probs=15.6

Q ss_pred             cceEecCCCcHHHHHHhh
Q 046733           86 TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~V  103 (106)
                      +.|+|..|+|||||...+
T Consensus        36 i~vvG~~~~GKSsli~~l   53 (199)
T 3l0i_B           36 LLLIGDSGVGKSCLLLRF   53 (199)
T ss_dssp             EEEECCTTSCCTTTTTSS
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            389999999999998764

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=83.18  E-value=0.59  Score=36.78  Aligned_cols=17  Identities=29%  Similarity=0.182  Sum_probs=15.1

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|..|+||||||..+
T Consensus        78 ~I~G~pGsGKTtlal~l   94 (366)
T 1xp8_A           78 EIYGPESGGKTTLALAI   94 (366)
T ss_dssp             EEEESTTSSHHHHHHHH
T ss_pred             EEEcCCCCChHHHHHHH
Confidence            88899999999999754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=83.17  E-value=0.82  Score=36.00  Aligned_cols=18  Identities=17%  Similarity=0.370  Sum_probs=16.2

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|+|||||...+.
T Consensus       179 ~lvG~~nvGKSSLin~l~  196 (436)
T 2hjg_A          179 CLIGRPNVGKSSLVNAML  196 (436)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHHh
Confidence            899999999999998764

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=82.79  E-value=0.52  Score=42.56  Aligned_cols=18  Identities=28%  Similarity=0.377  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|||..|.|||||++.+.
T Consensus       420 ~ivG~sGsGKSTl~~ll~  437 (1284)
T 3g5u_A          420 ALVGNSGCGKSTTVQLMQ  437 (1284)
T ss_dssp             EEECCSSSSHHHHHHHTT
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            999999999999999864

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=82.28  E-value=0.66  Score=35.79  Aligned_cols=19  Identities=26%  Similarity=0.744  Sum_probs=17.6

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .|+|..|.|||||-.+||+
T Consensus        29 vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           29 AIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             EEEECTTSSHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            8999999999999999875

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=82.09  E-value=0.52  Score=36.40  Aligned_cols=17  Identities=24%  Similarity=0.380  Sum_probs=13.9

Q ss_pred             ceE-ecCCCcHHHHHHhh
Q 046733           87 VIV-GIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~Iv-GmGGiGKTTLA~~V  103 (106)
                      .|+ |-||+||||+|-.+
T Consensus       147 av~s~KGGvGKTT~a~nL  164 (373)
T 3fkq_A          147 IFTSPCGGVGTSTVAAAC  164 (373)
T ss_dssp             EEECSSTTSSHHHHHHHH
T ss_pred             EEECCCCCChHHHHHHHH
Confidence            666 58999999998753

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=82.04  E-value=0.61  Score=37.66  Aligned_cols=18  Identities=28%  Similarity=0.444  Sum_probs=16.2

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .++|.+|+|||||...+.
T Consensus        45 ~lvG~~~vGKSSLl~~l~   62 (535)
T 3dpu_A           45 HLIGDGMAGKTSLLKQLI   62 (535)
T ss_dssp             EEESSSCSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999998753

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=81.78  E-value=0.54  Score=36.34  Aligned_cols=17  Identities=29%  Similarity=0.306  Sum_probs=13.5

Q ss_pred             ceE-ecCCCcHHHHHHhh
Q 046733           87 VIV-GIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~Iv-GmGGiGKTTLA~~V  103 (106)
                      .|+ |-||+||||+|-.+
T Consensus       112 av~s~KGGvGKTT~a~nL  129 (398)
T 3ez2_A          112 FISNLKGGVSKTVSTVSL  129 (398)
T ss_dssp             EECCSSSSSSHHHHHHHH
T ss_pred             EEEeCCCCccHHHHHHHH
Confidence            555 78999999998753

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=81.65  E-value=0.72  Score=36.60  Aligned_cols=17  Identities=12%  Similarity=-0.033  Sum_probs=14.9

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|..|+||||||-.+
T Consensus        32 eI~G~pGsGKTtL~Lq~   48 (333)
T 3io5_A           32 ILAGPSKSFKSNFGLTM   48 (333)
T ss_dssp             EEEESSSSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            78899999999998654

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=81.46  E-value=0.78  Score=33.54  Aligned_cols=17  Identities=29%  Similarity=0.223  Sum_probs=15.8

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|-|+.|.||||+|+.+
T Consensus        18 ~i~g~~gsGk~~i~~~l   34 (223)
T 3hdt_A           18 TIEREYGSGGRIVGKKL   34 (223)
T ss_dssp             EEEECTTSCHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHH
Confidence            89999999999999975

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=81.42  E-value=0.55  Score=37.60  Aligned_cols=18  Identities=28%  Similarity=0.333  Sum_probs=16.0

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|-|.-|+||||+++.+.
T Consensus        53 t~EG~dGsGKTT~~~~La   70 (376)
T 1of1_A           53 YIDGPHGMGKTTTTQLLV   70 (376)
T ss_dssp             EECSSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            777999999999999874

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=81.26  E-value=0.56  Score=37.53  Aligned_cols=17  Identities=6%  Similarity=0.059  Sum_probs=15.0

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|..|+||||||..+
T Consensus       246 li~G~pG~GKT~lal~~  262 (503)
T 1q57_A          246 MVTSGSGMVMSTFVRQQ  262 (503)
T ss_dssp             EEEESSCHHHHHHHHHH
T ss_pred             EEeecCCCCchHHHHHH
Confidence            77799999999999764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=81.21  E-value=0.41  Score=42.76  Aligned_cols=18  Identities=22%  Similarity=0.438  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus       703 aIiGpNGSGKSTLLklLa  720 (986)
T 2iw3_A          703 AVIGPNGAGKSTLINVLT  720 (986)
T ss_dssp             EECSCCCHHHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=80.96  E-value=1.3  Score=33.72  Aligned_cols=19  Identities=32%  Similarity=0.368  Sum_probs=16.5

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        34 I~vvG~~~~GKSSLln~L~   52 (353)
T 2x2e_A           34 IAVVGGQSAGKSSVLENFV   52 (353)
T ss_dssp             EEEECBTTSSHHHHHHTTT
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            3899999999999998753

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=80.68  E-value=1  Score=35.09  Aligned_cols=19  Identities=26%  Similarity=0.399  Sum_probs=16.8

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.++|..|+|||||...+.
T Consensus       165 i~~vG~~nvGKStliN~L~  183 (369)
T 3ec1_A          165 VYVVGCTNVGKSTFINRII  183 (369)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCchHHHHHHHH
Confidence            4899999999999998765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=80.66  E-value=0.75  Score=36.45  Aligned_cols=18  Identities=33%  Similarity=0.595  Sum_probs=16.2

Q ss_pred             cceEecCCCcHHHHHHhh
Q 046733           86 TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~V  103 (106)
                      +.|+|..|+|||||...+
T Consensus        26 V~lvG~~nvGKSTL~n~l   43 (456)
T 4dcu_A           26 VAIVGRPNVGKSTIFNRI   43 (456)
T ss_dssp             EEEECSSSSSHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            499999999999999865

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=80.64  E-value=0.83  Score=35.63  Aligned_cols=17  Identities=29%  Similarity=0.442  Sum_probs=15.2

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|..|+||||||..+
T Consensus       148 l~~G~sG~GKSt~a~~l  164 (314)
T 1ko7_A          148 LITGDSGIGKSETALEL  164 (314)
T ss_dssp             EEEESTTSSHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHH
Confidence            78899999999999764

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=80.58  E-value=1.2  Score=34.78  Aligned_cols=19  Identities=21%  Similarity=0.373  Sum_probs=16.7

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.++|..|+|||||...+.
T Consensus       163 i~~vG~~nvGKStliN~L~  181 (368)
T 3h2y_A          163 VYVVGCTNVGKSTFINRMI  181 (368)
T ss_dssp             EEEEEBTTSSHHHHHHHHH
T ss_pred             EEEecCCCCChhHHHHHHH
Confidence            4899999999999998764

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=80.43  E-value=0.6  Score=38.92  Aligned_cols=14  Identities=36%  Similarity=0.612  Sum_probs=13.4

Q ss_pred             ceEecCCCcHHHHH
Q 046733           87 VIVGIGGLGKIVVW  100 (106)
Q Consensus        87 ~IvGmGGiGKTTLA  100 (106)
                      .|+|..|.|||||.
T Consensus        48 ~liGpNGaGKSTLl   61 (670)
T 3ux8_A           48 VLTGLSGSGKSSLA   61 (670)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEECCCCCCHHHHh
Confidence            99999999999996

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=80.27  E-value=1.4  Score=36.11  Aligned_cols=31  Identities=23%  Similarity=0.388  Sum_probs=22.0

Q ss_pred             HHHHHHhcCC-CCCcceEecCCCcHHHHHHhh
Q 046733           73 KIINRLSALN-DVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        73 ~lv~~L~~~~-~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      ++++.|.--. ..+..|+|..|+|||+|++.+
T Consensus       164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~I  195 (427)
T 3l0o_A          164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEI  195 (427)
T ss_dssp             HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHH
T ss_pred             hhhhhcccccCCceEEEecCCCCChhHHHHHH
Confidence            4566664322 224499999999999999765

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=80.16  E-value=2.1  Score=32.19  Aligned_cols=17  Identities=29%  Similarity=0.405  Sum_probs=13.9

Q ss_pred             ceEec-CCCcHHHHHHhh
Q 046733           87 VIVGI-GGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGm-GGiGKTTLA~~V  103 (106)
                      .|.+. ||.||||+|-.+
T Consensus       108 ~vts~kgG~GKTtva~nL  125 (299)
T 3cio_A          108 MITGATPDSGKTFVSSTL  125 (299)
T ss_dssp             EEEESSSSSCHHHHHHHH
T ss_pred             EEECCCCCCChHHHHHHH
Confidence            77775 899999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	106
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	1e-06

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.9 bits (100), Expect = 1e-06
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 65  YGRDGDRNKIINRLSALNDVDT---VIVGIGGLGKIVVWKNIY 104
           Y R+   +++I +L  + D+D+    + G  G GK V+     
Sbjct: 23  YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQAL 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.18
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.92
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.84
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.83
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.81
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.68
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.65
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.64
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.63
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.59
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.59
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.5
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.5
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.41
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.34
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.87
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.74
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.71
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.7
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.36
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.13
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.99
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.78
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.62
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.57
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.46
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.33
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.27
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.89
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	94.57
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	94.52
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	94.22
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	94.18
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	94.17
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	94.16
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	94.09
d1g2912	240	Maltose transport protein MalK, N-terminal domain	94.06
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	94.02
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	93.97
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.95
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	93.9
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.89
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.88
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	93.86
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	93.85
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	93.82
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	93.81
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.69
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	93.62
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	93.6
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	93.57
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.53
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	93.27
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	93.19
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	93.16
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	93.02
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.8
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	92.78
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	92.75
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	92.58
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	92.47
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.47
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	92.43
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	92.26
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.15
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	92.08
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	92.02
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	92.0
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	91.96
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	91.93
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	91.91
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	91.7
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	91.57
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	91.47
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	91.42
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	90.91
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	90.91
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	90.69
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	90.58
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	90.57
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	90.48
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	89.36
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	89.23
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	88.17
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	87.1
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	86.46
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	85.09
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	85.03
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	84.65
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	84.53
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	84.28
d1tuea_	205	Replication protein E1 helicase domain {Human papi	83.86
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	82.72
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	82.04
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	81.78
d1xpua3	289	Transcription termination factor Rho, ATPase domai	81.62

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.18  E-value=5.2e-12  Score=94.17  Aligned_cols=44  Identities=23%  Similarity=0.308  Sum_probs=37.4

Q ss_pred             CceeecchhHHHHHHHHhcCCCC--Cc-ceEecCCCcHHHHHHhhhc
Q 046733           62 KFAYGRDGDRNKIINRLSALNDV--DT-VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~--~~-~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +.++||+.++++|+++|....+.  .+ .|+||||+||||||+.||+
T Consensus        20 ~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          20 MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999753332  34 9999999999999999974

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.92  E-value=3.9e-06  Score=58.20  Aligned_cols=42  Identities=17%  Similarity=0.225  Sum_probs=33.4

Q ss_pred             ceeecchhHHHHHHHHhc----CCCC--CcceEecCCCcHHHHHHhhh
Q 046733           63 FAYGRDGDRNKIINRLSA----LNDV--DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        63 ~vvGrd~~~~~lv~~L~~----~~~~--~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .++||+.+.+.|.++|..    ....  .+-|+|..|+||||+|+.+.
T Consensus        17 ~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~   64 (276)
T d1fnna2          17 RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLW   64 (276)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHH
Confidence            589999999999998853    1111  23888999999999999875

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.84  E-value=6.3e-06  Score=56.98  Aligned_cols=37  Identities=19%  Similarity=0.242  Sum_probs=30.0

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .+++||+++.++|.+.     ..+. .|+|.+|+|||+|++.+
T Consensus        12 ~~f~GR~~el~~l~~~-----~~~~i~i~G~~G~GKTsLl~~~   49 (283)
T d2fnaa2          12 KDFFDREKEIEKLKGL-----RAPITLVLGLRRTGKSSIIKIG   49 (283)
T ss_dssp             GGSCCCHHHHHHHHHT-----CSSEEEEEESTTSSHHHHHHHH
T ss_pred             hhCCChHHHHHHHHhc-----cCCEEEEEcCCCCcHHHHHHHH
Confidence            5799999999888762     2233 88899999999999875

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=5.8e-06  Score=61.89  Aligned_cols=42  Identities=21%  Similarity=0.396  Sum_probs=36.3

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      ..++||++++++|+..|......++-+||..|+|||+|+..+
T Consensus        18 d~~igRd~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~l   59 (268)
T d1r6bx2          18 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGL   59 (268)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHH
T ss_pred             CcccChHHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHH
Confidence            358999999999999998766666689999999999998764

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=7e-06  Score=59.18  Aligned_cols=42  Identities=24%  Similarity=0.425  Sum_probs=36.1

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      ..++||++++++++..|......++-+||-.|+|||+|+..+
T Consensus        22 d~~igRd~Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~L   63 (195)
T d1jbka_          22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGL   63 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHH
T ss_pred             CCCcCcHHHHHHHHHHHhccCCCCeEEEecCCcccHHHHHHH
Confidence            358999999999999998766666689999999999998754

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.68  E-value=1.8e-05  Score=61.73  Aligned_cols=40  Identities=25%  Similarity=0.427  Sum_probs=35.3

Q ss_pred             ceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHh
Q 046733           63 FAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKN  102 (106)
Q Consensus        63 ~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~  102 (106)
                      .+|||++++++++..|......++-+||..|+|||+|+..
T Consensus        23 ~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~   62 (387)
T d1qvra2          23 PVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEG   62 (387)
T ss_dssp             CCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred             CCcCcHHHHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHH
Confidence            5899999999999999887776778999999999998753

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.65  E-value=1.7e-05  Score=55.28  Aligned_cols=42  Identities=12%  Similarity=0.116  Sum_probs=35.3

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      .+++|.++-++.|..++.......+-+.|..|+||||||+.+
T Consensus        24 ~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~i   65 (231)
T d1iqpa2          24 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALAL   65 (231)
T ss_dssp             TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHH
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHH
Confidence            579999999999999997654434478899999999999875

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.64  E-value=2e-05  Score=54.48  Aligned_cols=43  Identities=16%  Similarity=0.111  Sum_probs=34.9

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++.|..++.......+-+.|..|+||||||+.+.
T Consensus        12 ~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~   54 (237)
T d1sxjd2          12 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALT   54 (237)
T ss_dssp             TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHH
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHH
Confidence            4699999999999998865443345788999999999998764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.63  E-value=2.5e-05  Score=54.42  Aligned_cols=42  Identities=17%  Similarity=0.202  Sum_probs=35.0

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      .++||.++-++.|.+|+.......+-++|..|+||||+|+.+
T Consensus        15 ~d~ig~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~l   56 (224)
T d1sxjb2          15 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCL   56 (224)
T ss_dssp             GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHH
Confidence            479999999999999997655444578899999999999865

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=2.9e-05  Score=53.85  Aligned_cols=43  Identities=14%  Similarity=0.111  Sum_probs=35.0

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .++||.++.++.|.+|+.......+=++|..|+||||||+.+.
T Consensus        14 ~divg~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la   56 (227)
T d1sxjc2          14 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALA   56 (227)
T ss_dssp             GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHH
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHH
Confidence            4699999999999999876543344788999999999999763

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=2e-05  Score=55.06  Aligned_cols=43  Identities=14%  Similarity=0.101  Sum_probs=31.8

Q ss_pred             CceeecchhHHHHHHHHhcCCCC-CcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDV-DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~-~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++-++.|.+++...... .+-++|..|+||||+|+.+.
T Consensus        11 ~diig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la   54 (252)
T d1sxje2          11 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALL   54 (252)
T ss_dssp             GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHH
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHH
Confidence            46999887777776665443322 23789999999999999864

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.50  E-value=2.9e-05  Score=54.35  Aligned_cols=43  Identities=23%  Similarity=0.247  Sum_probs=32.4

Q ss_pred             CceeecchhHHHHHHHHhcCC--C---CCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALN--D---VDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~--~---~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .++||.++-+++|..++....  .   ..+-++|+.|+||||||+.+.
T Consensus         9 ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la   56 (239)
T d1ixsb2           9 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIA   56 (239)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHH
Confidence            368999988888887774321  1   123678999999999999864

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.50  E-value=3e-05  Score=53.84  Aligned_cols=43  Identities=19%  Similarity=0.075  Sum_probs=32.3

Q ss_pred             CceeecchhHHHHHHHHhc----CC-CCCc----ceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSA----LN-DVDT----VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~----~~-~~~~----~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..++||+.+.+.|.+.|..    .. ..+.    -|+|..|+||||+++.+.
T Consensus        16 ~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~   67 (287)
T d1w5sa2          16 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTV   67 (287)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHH
Confidence            5789999999999887632    11 1222    346999999999999875

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.41  E-value=6.8e-05  Score=52.25  Aligned_cols=43  Identities=23%  Similarity=0.247  Sum_probs=32.9

Q ss_pred             CceeecchhHHHHHHHHhcC----CC-CCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSAL----ND-VDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~----~~-~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .++||.++-++.|..++...    .. ..+-++|..|+||||||+.+-
T Consensus         9 ~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la   56 (238)
T d1in4a2           9 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIA   56 (238)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHH
Confidence            46999999999998887432    11 123788999999999999863

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=9.1e-05  Score=51.67  Aligned_cols=43  Identities=21%  Similarity=0.300  Sum_probs=32.9

Q ss_pred             CceeecchhHHHHHHHHhcC------------C-CC---C-cceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSAL------------N-DV---D-TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~------------~-~~---~-~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.+++|.++|..-            . ..   . +-++|..|+||||+|+++.
T Consensus        14 ~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la   73 (253)
T d1sxja2          14 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVA   73 (253)
T ss_dssp             GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHH
Confidence            46999999999999988530            0 01   1 2778999999999999874

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.87  E-value=0.00058  Score=44.97  Aligned_cols=34  Identities=15%  Similarity=0.148  Sum_probs=22.7

Q ss_pred             HHHHHHHHhcCCC-CCc--ceEecCCCcHHHHHHhhh
Q 046733           71 RNKIINRLSALND-VDT--VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        71 ~~~lv~~L~~~~~-~~~--~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++.|++.+..... ..+  .|.|..|.||||||+.+.
T Consensus         7 ~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_           7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLS   43 (198)
T ss_dssp             HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            4445544433322 233  899999999999999763

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00069  Score=47.71  Aligned_cols=43  Identities=19%  Similarity=0.158  Sum_probs=34.5

Q ss_pred             CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++.|..++......+ +-++|..|+||||+|+.+.
T Consensus        12 ~dlig~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~   55 (239)
T d1njfa_          12 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA   55 (239)
T ss_dssp             GGSCSCHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHH
T ss_pred             HHccChHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHH
Confidence            469999999999999887654333 3678999999999999753

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.71  E-value=0.00028  Score=51.96  Aligned_cols=42  Identities=12%  Similarity=0.136  Sum_probs=30.7

Q ss_pred             CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      ++|+|.+.-++.|+-.+.....+++=++|..|+||||||+.+
T Consensus         7 ~~I~Gq~~~kral~laa~~~~~h~vLl~G~pG~GKT~lar~~   48 (333)
T d1g8pa_           7 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRAL   48 (333)
T ss_dssp             GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHH
T ss_pred             hhccCcHHHHHHHHHHHhccCCCeEEEECCCCccHHHHHHHH
Confidence            579999987776553333222345688899999999999965

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00015  Score=48.09  Aligned_cols=17  Identities=29%  Similarity=0.507  Sum_probs=15.4

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -++|+.|.||||||+.+
T Consensus        23 ~L~G~pGSGKTTiAk~L   39 (195)
T d1x6va3          23 WLTGLSGAGKTTVSMAL   39 (195)
T ss_dssp             EEESSCHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            56799999999999986

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.36  E-value=0.0016  Score=47.96  Aligned_cols=43  Identities=14%  Similarity=0.342  Sum_probs=30.8

Q ss_pred             CceeecchhHHHHHHHHh----cCC----------CCCcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLS----ALN----------DVDTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~----~~~----------~~~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..|+|.++.++.|...+.    ...          ...+-.+|+.|+|||.||+++-
T Consensus        14 ~~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA   70 (309)
T d1ofha_          14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLA   70 (309)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred             CcccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHh
Confidence            478999998888865441    111          1123678999999999999863

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.13  E-value=0.0011  Score=44.99  Aligned_cols=18  Identities=33%  Similarity=0.444  Sum_probs=16.0

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      -++|+.|+||||+|+.+.
T Consensus        18 il~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          18 VAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             EEECCTTSSHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            788999999999998763

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.99  E-value=0.0012  Score=45.60  Aligned_cols=18  Identities=28%  Similarity=0.486  Sum_probs=16.0

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      -++|..|.||||||+.+.
T Consensus        36 lL~GpPGtGKT~la~~la   53 (273)
T d1gvnb_          36 LLGGQPGSGKTSLRSAIF   53 (273)
T ss_dssp             EEECCTTSCTHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            677999999999999874

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.0031  Score=45.70  Aligned_cols=43  Identities=23%  Similarity=0.294  Sum_probs=29.7

Q ss_pred             CceeecchhHHHHHHH---HhcCC---C-----CC-cceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINR---LSALN---D-----VD-TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~---L~~~~---~-----~~-~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+++|.++.++.|.+.   +....   .     .+ +-++|..|.|||+||+.+-
T Consensus        12 ~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA   66 (256)
T d1lv7a_          12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIA   66 (256)
T ss_dssp             GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHH
T ss_pred             HHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHH
Confidence            4799999888777543   33211   0     11 2667999999999999863

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.62  E-value=0.0048  Score=44.17  Aligned_cols=43  Identities=12%  Similarity=0.078  Sum_probs=30.4

Q ss_pred             CceeecchhHHHHHHHHh------cCCC-C---CcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLS------ALND-V---DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~------~~~~-~---~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ..+||..+.++.+++.+.      .... .   .+=++|..|+|||+||+.|.
T Consensus         9 ~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA   61 (246)
T d1d2na_           9 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIA   61 (246)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCCcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHh
Confidence            468898888887776543      1111 1   12577999999999999874

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.57  E-value=0.0052  Score=44.12  Aligned_cols=43  Identities=19%  Similarity=0.281  Sum_probs=29.2

Q ss_pred             CceeecchhHHHHHHH---HhcCC------C--C-CcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINR---LSALN------D--V-DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~---L~~~~------~--~-~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+|+|.++.++.|.+.   +....      .  . .+-++|..|.|||+||+.+-
T Consensus         9 ~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia   63 (247)
T d1ixza_           9 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA   63 (247)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHH
Confidence            4689999877766443   32211      1  1 13677999999999999874

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.46  E-value=0.0077  Score=43.02  Aligned_cols=43  Identities=14%  Similarity=0.134  Sum_probs=31.0

Q ss_pred             CceeecchhHHHHHHHH----hcC------C--CC-CcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRL----SAL------N--DV-DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L----~~~------~--~~-~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+|.|.++.+++|.+.+    ...      .  .. .+-++|..|.|||+||+.+-
T Consensus         4 ~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala   59 (258)
T d1e32a2           4 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA   59 (258)
T ss_dssp             GGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHH
T ss_pred             hhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHH
Confidence            36899999888887764    211      1  01 23677999999999999864

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.33  E-value=0.0035  Score=43.85  Aligned_cols=18  Identities=17%  Similarity=0.259  Sum_probs=15.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      -+.|+.|.||||||+.+.
T Consensus        28 wltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          28 WLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            566999999999998764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.0086  Score=44.22  Aligned_cols=42  Identities=17%  Similarity=0.366  Sum_probs=31.2

Q ss_pred             CceeecchhHHHHHHHHhcC-----CCCC---c-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSAL-----NDVD---T-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~-----~~~~---~-~IvGmGGiGKTTLA~~V  103 (106)
                      ..|+|.++.++.|...+...     +..+   . -.+|..|+|||.||+.+
T Consensus        22 ~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~l   72 (315)
T d1r6bx3          22 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL   72 (315)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHH
T ss_pred             CeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHH
Confidence            57999999999997766321     1111   1 57799999999999975

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=94.89  E-value=0.0089  Score=38.92  Aligned_cols=19  Identities=21%  Similarity=0.515  Sum_probs=16.6

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        19 I~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          19 ILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             EEEEESTTSSHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            3899999999999998753

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.57  E-value=0.0082  Score=43.56  Aligned_cols=19  Identities=32%  Similarity=0.389  Sum_probs=17.2

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|.|||||++.+.
T Consensus        44 iaivG~sGsGKSTLl~ll~   62 (253)
T d3b60a1          44 VALVGRSGSGKSTIASLIT   62 (253)
T ss_dssp             EEEEECTTSSHHHHHHHHT
T ss_pred             EEEECCCCChHHHHHHHHh
Confidence            3999999999999999874

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.52  E-value=0.0075  Score=42.10  Aligned_cols=18  Identities=33%  Similarity=0.495  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        31 ~l~G~NGsGKSTLl~~i~   48 (200)
T d1sgwa_          31 NFHGPNGIGKTTLLKTIS   48 (200)
T ss_dssp             EEECCTTSSHHHHHHHHT
T ss_pred             EEECCCCChHHHHHHHHh
Confidence            899999999999999875

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.22  E-value=0.0098  Score=43.07  Aligned_cols=18  Identities=33%  Similarity=0.385  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        44 aivG~sGsGKSTLl~li~   61 (251)
T d1jj7a_          44 ALVGPNGSGKSTVAALLQ   61 (251)
T ss_dssp             EEECSTTSSHHHHHHHHT
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            999999999999999864

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=94.18  E-value=0.01  Score=42.76  Aligned_cols=18  Identities=22%  Similarity=0.366  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        32 aivG~sGsGKSTLl~ll~   49 (242)
T d1mv5a_          32 AFAGPSGGGKSTIFSLLE   49 (242)
T ss_dssp             EEECCTTSSHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999864

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.17  E-value=0.018  Score=41.09  Aligned_cols=42  Identities=21%  Similarity=0.249  Sum_probs=31.7

Q ss_pred             eeecchhHHHHHHHHhcCCCC--CcceEecCCCcHHHHHHhhhc
Q 046733           64 AYGRDGDRNKIINRLSALNDV--DTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        64 vvGrd~~~~~lv~~L~~~~~~--~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .||......++.+.+..-...  .+-|.|-.|+||+++|+.++.
T Consensus         2 ~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2           2 YVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred             eEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHH
Confidence            577777788888877553332  347789999999999999863

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=94.16  E-value=0.0096  Score=43.00  Aligned_cols=19  Identities=42%  Similarity=0.377  Sum_probs=17.1

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|.|||||++.+.
T Consensus        32 vaIvG~sGsGKSTLl~ll~   50 (241)
T d2pmka1          32 IGIVGRSGSGKSTLTKLIQ   50 (241)
T ss_dssp             EEEECSTTSSHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3999999999999999864

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=94.09  E-value=0.011  Score=42.88  Aligned_cols=18  Identities=22%  Similarity=0.466  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        35 ~iiG~sGsGKSTLl~~i~   52 (240)
T d3dhwc1          35 GVIGASGAGKSTLIRCVN   52 (240)
T ss_dssp             EEEESTTSSHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHc
Confidence            999999999999999874

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=94.06  E-value=0.011  Score=42.98  Aligned_cols=18  Identities=28%  Similarity=0.519  Sum_probs=16.9

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        33 ~liG~sGaGKSTll~~i~   50 (240)
T d1g2912          33 ILLGPSGCGKTTTLRMIA   50 (240)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCChHHHHHHHHh
Confidence            999999999999999875

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.02  E-value=0.012  Score=43.29  Aligned_cols=18  Identities=33%  Similarity=0.394  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        66 aivG~nGsGKSTLl~~i~   83 (281)
T d1r0wa_          66 AITGSTGSGKTSLLMLIL   83 (281)
T ss_dssp             EEEESTTSSHHHHHHHHH
T ss_pred             EEECCCCChHHHHHHHHh
Confidence            999999999999999874

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.97  E-value=0.013  Score=37.48  Aligned_cols=20  Identities=20%  Similarity=0.373  Sum_probs=17.0

Q ss_pred             CCcceEecCCCcHHHHHHhh
Q 046733           84 VDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        84 ~~~~IvGmGGiGKTTLA~~V  103 (106)
                      .++.+||..|+|||||...+
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l   33 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHML   33 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            35679999999999998765

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=93.95  E-value=0.014  Score=37.71  Aligned_cols=20  Identities=25%  Similarity=0.483  Sum_probs=17.0

Q ss_pred             CCcceEecCCCcHHHHHHhh
Q 046733           84 VDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        84 ~~~~IvGmGGiGKTTLA~~V  103 (106)
                      .++.|+|..|+|||||...+
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl   35 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQF   35 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            35589999999999999864

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.90  E-value=0.012  Score=42.95  Aligned_cols=18  Identities=33%  Similarity=0.495  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||++.+.
T Consensus        32 ~iiG~sGsGKSTLl~~i~   49 (258)
T d1b0ua_          32 SIIGSSGSGKSTFLRCIN   49 (258)
T ss_dssp             EEECCTTSSHHHHHHHHT
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            999999999999999874

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.89  E-value=0.032  Score=38.36  Aligned_cols=36  Identities=17%  Similarity=0.224  Sum_probs=26.3

Q ss_pred             chhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733           68 DGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        68 d~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V  103 (106)
                      ++..+++.+.+....-.. +-+.|..|+||||+|+.+
T Consensus         8 ~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~   44 (207)
T d1a5ta2           8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL   44 (207)
T ss_dssp             HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHH
Confidence            345677777776554433 377899999999999964

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.88  E-value=0.031  Score=42.25  Aligned_cols=17  Identities=24%  Similarity=0.567  Sum_probs=14.8

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -.+|+.|+|||.||+.+
T Consensus        72 LfiGPTGvGKTElAk~L   88 (364)
T d1um8a_          72 LLIGPTGSGKTLMAQTL   88 (364)
T ss_dssp             EEECCTTSSHHHHHHHH
T ss_pred             eeeCCCCccHHHHHHHH
Confidence            55699999999999964

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.013  Score=37.41  Aligned_cols=19  Identities=16%  Similarity=0.190  Sum_probs=16.1

Q ss_pred             Cc-ceEecCCCcHHHHHHhh
Q 046733           85 DT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        85 ~~-~IvGmGGiGKTTLA~~V  103 (106)
                      ++ -|.|.+|+|||+||..+
T Consensus        24 ~v~~i~G~~GsGKT~l~l~l   43 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTL   43 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHH
Confidence            44 88899999999999754

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.85  E-value=0.012  Score=42.19  Aligned_cols=43  Identities=16%  Similarity=0.145  Sum_probs=29.0

Q ss_pred             CceeecchhHHHHHHHHh----cC------CC--C-CcceEecCCCcHHHHHHhhh
Q 046733           62 KFAYGRDGDRNKIINRLS----AL------ND--V-DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~----~~------~~--~-~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      .+|+|.++.++.|.+.+.    ..      ..  . .+=++|..|.|||+||+.+.
T Consensus         7 ~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala   62 (265)
T d1r7ra3           7 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA   62 (265)
T ss_dssp             SSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHH
Confidence            468888877777665542    11      11  1 12577999999999999874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=93.82  E-value=0.016  Score=38.04  Aligned_cols=19  Identities=26%  Similarity=0.601  Sum_probs=16.4

Q ss_pred             CcceEecCCCcHHHHHHhh
Q 046733           85 DTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~V  103 (106)
                      ++.++|..|+|||||...+
T Consensus        19 KI~lvG~~~vGKTsLi~~l   37 (182)
T d1moza_          19 RILILGLDGAGKTTILYRL   37 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3488999999999999865

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.81  E-value=0.012  Score=42.33  Aligned_cols=18  Identities=33%  Similarity=0.379  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        35 ~iiG~sGsGKSTLl~~i~   52 (230)
T d1l2ta_          35 SIMGPSGSGKSTMLNIIG   52 (230)
T ss_dssp             EEECSTTSSHHHHHHHHT
T ss_pred             EEECCCCCCcchhhHhcc
Confidence            999999999999999764

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.69  E-value=0.014  Score=42.16  Aligned_cols=18  Identities=39%  Similarity=0.532  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~liGpsGsGKSTLl~~i~   47 (232)
T d2awna2          30 VFVGPSGCGKSTLLRMIA   47 (232)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCChHHHHHHHHh
Confidence            999999999999999874

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.0052  Score=39.15  Aligned_cols=19  Identities=21%  Similarity=0.220  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .|+|..|.||||+..++++
T Consensus        28 vi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            6789999999999998764

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.60  E-value=0.014  Score=42.34  Aligned_cols=18  Identities=33%  Similarity=0.525  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        36 ~liGpsGaGKSTLl~~i~   53 (239)
T d1v43a3          36 VLLGPSGCGKTTTLRMIA   53 (239)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCChHHHHHHHHH
Confidence            999999999999999874

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.57  E-value=0.023  Score=39.62  Aligned_cols=31  Identities=19%  Similarity=0.482  Sum_probs=20.7

Q ss_pred             HHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHh
Q 046733           71 RNKIINRLSALNDVDT-VIVGIGGLGKIVVWKN  102 (106)
Q Consensus        71 ~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~  102 (106)
                      ...+++.+.. ..+++ -+.|=||+||||+|-.
T Consensus         8 ~~~~~~~~~~-~~~~iii~sGKGGVGKTT~a~n   39 (279)
T d1ihua2           8 LSALVDDIAR-NEHGLIMLMGKGGVGKTTMAAA   39 (279)
T ss_dssp             HHHHHHHHHT-TSCEEEEEECSTTSSHHHHHHH
T ss_pred             HHHHHHHhhc-CCCEEEEEECCCCCCHHHHHHH
Confidence            4455555543 34445 6669999999998754

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.53  E-value=0.015  Score=40.63  Aligned_cols=20  Identities=25%  Similarity=0.174  Sum_probs=17.6

Q ss_pred             cceEecCCCcHHHHHHhhhc
Q 046733           86 TVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      +-|+|..|+|||-|++++++
T Consensus        39 l~l~G~~G~GKTHLl~A~~~   58 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGN   58 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            37899999999999998764

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.27  E-value=0.018  Score=41.88  Aligned_cols=18  Identities=39%  Similarity=0.503  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        28 ~liGpnGaGKSTll~~i~   45 (240)
T d2onka1          28 VLLGPTGAGKSVFLELIA   45 (240)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCChHHHHHHHHH
Confidence            899999999999999875

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.19  E-value=0.018  Score=41.56  Aligned_cols=18  Identities=33%  Similarity=0.492  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        34 ~liG~nGaGKSTLl~~i~   51 (254)
T d1g6ha_          34 LIIGPNGSGKSTLINVIT   51 (254)
T ss_dssp             EEECSTTSSHHHHHHHHT
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            899999999999999875

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.16  E-value=0.015  Score=42.32  Aligned_cols=19  Identities=32%  Similarity=0.403  Sum_probs=17.0

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|.|||||++.+.
T Consensus        47 vaivG~sGsGKSTLl~ll~   65 (255)
T d2hyda1          47 VAFVGMSGGGKSTLINLIP   65 (255)
T ss_dssp             EEEECSTTSSHHHHHTTTT
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            3999999999999999764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=93.02  E-value=0.02  Score=41.12  Aligned_cols=18  Identities=28%  Similarity=0.512  Sum_probs=16.8

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        36 ~liGpnGaGKSTl~~~i~   53 (240)
T d1ji0a_          36 TLIGANGAGKTTTLSAIA   53 (240)
T ss_dssp             EEECSTTSSHHHHHHHHT
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            999999999999999875

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=92.78  E-value=0.024  Score=42.36  Aligned_cols=17  Identities=24%  Similarity=0.288  Sum_probs=15.9

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|.|..|+||||+|+.+
T Consensus        84 GIaG~sgSGKSTla~~L  100 (308)
T d1sq5a_          84 SIAGSVAVGKSTTARVL  100 (308)
T ss_dssp             EEEECTTSSHHHHHHHH
T ss_pred             EEeCCCCCCCcHHHHHH
Confidence            89999999999999976

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=92.75  E-value=0.046  Score=42.37  Aligned_cols=42  Identities=14%  Similarity=0.330  Sum_probs=29.7

Q ss_pred             CceeecchhHHHHHHHHh-------cCC-------CCCcceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLS-------ALN-------DVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~-------~~~-------~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      ..|||.++.++.|--.+-       ...       .+++=++|+.|+|||.||+.+
T Consensus        14 ~yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~L   69 (443)
T d1g41a_          14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRL   69 (443)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHH
T ss_pred             CcccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHH
Confidence            479999988887744331       111       113478899999999999976

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.58  E-value=0.029  Score=37.09  Aligned_cols=17  Identities=24%  Similarity=0.345  Sum_probs=15.6

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|.+|+|||+||..+
T Consensus        38 ~i~G~~G~GKT~~~l~~   54 (258)
T d2i1qa2          38 EFAGVFGSGKTQIMHQS   54 (258)
T ss_dssp             EEEESTTSSHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHH
Confidence            88899999999999865

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=92.47  E-value=0.028  Score=40.30  Aligned_cols=18  Identities=28%  Similarity=0.425  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        32 glvG~nGaGKSTLl~~l~   49 (238)
T d1vpla_          32 GLIGPNGAGKTTTLRIIS   49 (238)
T ss_dssp             EEECCTTSSHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            899999999999999864

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.43  E-value=0.06  Score=38.16  Aligned_cols=35  Identities=20%  Similarity=0.342  Sum_probs=24.6

Q ss_pred             hHHHHHHHHhcCCCC--CcceEecCCCcHHHHHHhhh
Q 046733           70 DRNKIINRLSALNDV--DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        70 ~~~~lv~~L~~~~~~--~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ...++...|......  ++.++|..|+|||||...++
T Consensus        17 ~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~il   53 (257)
T d1h65a_          17 KLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSII   53 (257)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHh
Confidence            344555555544333  34899999999999998875

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=92.26  E-value=0.02  Score=41.18  Aligned_cols=18  Identities=39%  Similarity=0.518  Sum_probs=16.6

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        30 ~liGpsGaGKSTll~~l~   47 (229)
T d3d31a2          30 VILGPTGAGKTLFLELIA   47 (229)
T ss_dssp             EEECCCTHHHHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            999999999999999864

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.15  E-value=0.039  Score=40.68  Aligned_cols=42  Identities=21%  Similarity=0.361  Sum_probs=30.7

Q ss_pred             CceeecchhHHHHHHHHhcC----CC-CC---c-ceEecCCCcHHHHHHhh
Q 046733           62 KFAYGRDGDRNKIINRLSAL----ND-VD---T-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        62 ~~vvGrd~~~~~lv~~L~~~----~~-~~---~-~IvGmGGiGKTTLA~~V  103 (106)
                      ..++|.++.++.|.+.+...    .. .+   + -.+|..|+|||.||+.+
T Consensus        23 ~~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~l   73 (315)
T d1qvra3          23 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTL   73 (315)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHH
T ss_pred             CeEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHH
Confidence            47999999999987766421    11 11   2 56799999999999964

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.08  E-value=0.036  Score=37.36  Aligned_cols=17  Identities=24%  Similarity=0.282  Sum_probs=15.1

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|..|.||||||..+
T Consensus        40 li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          40 EVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             EEEESTTSSHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHH
Confidence            88899999999999753

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.02  E-value=0.037  Score=36.69  Aligned_cols=16  Identities=19%  Similarity=0.123  Sum_probs=14.5

Q ss_pred             ceEecCCCcHHHHHHh
Q 046733           87 VIVGIGGLGKIVVWKN  102 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~  102 (106)
                      -|.|..|.||||||-.
T Consensus        38 li~G~pGsGKT~l~lq   53 (251)
T d1szpa2          38 ELFGEFRTGKSQLCHT   53 (251)
T ss_dssp             EEEESTTSSHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHH
Confidence            7889999999999964

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.00  E-value=0.073  Score=39.52  Aligned_cols=18  Identities=28%  Similarity=0.490  Sum_probs=15.7

Q ss_pred             cceEecCCCcHHHHHHhh
Q 046733           86 TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~V  103 (106)
                      +.|.|.+|.|||||...+
T Consensus        54 igitG~pGaGKSTli~~l   71 (323)
T d2qm8a1          54 VGITGVPGVGKSTTIDAL   71 (323)
T ss_dssp             EEEECCTTSCHHHHHHHH
T ss_pred             EeeeCCCCCCHHHHHHHH
Confidence            399999999999998754

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=91.96  E-value=0.037  Score=38.30  Aligned_cols=17  Identities=29%  Similarity=0.497  Sum_probs=14.8

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|+|.+|+||||||-.+
T Consensus        33 ~i~G~~G~GKS~l~l~l   49 (274)
T d1nlfa_          33 ALVSPGGAGKSMLALQL   49 (274)
T ss_dssp             EEEESTTSSHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHH
Confidence            78899999999998653

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=91.93  E-value=0.042  Score=36.34  Aligned_cols=19  Identities=16%  Similarity=0.323  Sum_probs=17.0

Q ss_pred             cceEecCCCcHHHHHHhhh
Q 046733           86 TVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~Vy  104 (106)
                      +.|+|..|+|||||...+.
T Consensus        26 I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          26 IALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             EEEEEBTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHhc
Confidence            4899999999999998775

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=91.91  E-value=0.08  Score=39.40  Aligned_cols=32  Identities=13%  Similarity=0.278  Sum_probs=21.2

Q ss_pred             HHHHHHHhcCCC-C-CcceEecCCCcHHHHHHhh
Q 046733           72 NKIINRLSALND-V-DTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        72 ~~lv~~L~~~~~-~-~~~IvGmGGiGKTTLA~~V  103 (106)
                      ..+++.|..... . .+.|.|.+|.|||||...+
T Consensus        41 ~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l   74 (327)
T d2p67a1          41 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAF   74 (327)
T ss_dssp             HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHH
T ss_pred             HHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHH
Confidence            344544433222 2 3499999999999998754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=91.70  E-value=0.03  Score=39.77  Aligned_cols=18  Identities=28%  Similarity=0.433  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+.
T Consensus        29 ~iiG~nGaGKSTLl~~l~   46 (231)
T d1l7vc_          29 HLVGPNGAGKSTLLARMA   46 (231)
T ss_dssp             ECBCCTTSSHHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHh
Confidence            999999999999998764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.57  E-value=0.02  Score=41.57  Aligned_cols=18  Identities=33%  Similarity=0.414  Sum_probs=16.5

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      .|+|..|.|||||.+.+-
T Consensus        35 ~iiG~sGsGKSTll~~i~   52 (242)
T d1oxxk2          35 GILGPSGAGKTTFMRIIA   52 (242)
T ss_dssp             EEECSCHHHHHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            999999999999999763

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=91.47  E-value=0.046  Score=37.01  Aligned_cols=17  Identities=24%  Similarity=0.444  Sum_probs=15.3

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|..|+|||+||..+
T Consensus        30 li~G~pGsGKT~l~~qi   46 (242)
T d1tf7a2          30 LATGATGTGKTLLVSRF   46 (242)
T ss_dssp             EEEECTTSSHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHH
Confidence            88899999999999764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=91.42  E-value=0.036  Score=35.43  Aligned_cols=20  Identities=15%  Similarity=0.273  Sum_probs=17.1

Q ss_pred             CcceEecCCCcHHHHHHhhh
Q 046733           85 DTVIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy  104 (106)
                      ++.|+|..++|||||..++.
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            35999999999999998763

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.91  E-value=0.051  Score=36.34  Aligned_cols=17  Identities=18%  Similarity=0.079  Sum_probs=15.3

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|..|.|||+||..+
T Consensus        41 ~i~G~~GsGKT~lalq~   57 (258)
T d1v5wa_          41 EAFGEFRTGKTQLSHTL   57 (258)
T ss_dssp             EEECCTTCTHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            88899999999999764

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.91  E-value=0.047  Score=40.33  Aligned_cols=17  Identities=29%  Similarity=0.296  Sum_probs=15.2

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      .|-|..|+||||||..+
T Consensus        31 Gi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          31 FFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             EEECCTTSSHHHHHHHH
T ss_pred             EeECCCCCCHHHHHHHH
Confidence            77899999999999865

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=90.69  E-value=0.061  Score=35.35  Aligned_cols=16  Identities=25%  Similarity=0.459  Sum_probs=14.5

Q ss_pred             ceEecCCCcHHHHHHh
Q 046733           87 VIVGIGGLGKIVVWKN  102 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~  102 (106)
                      -|.|..|+|||+||..
T Consensus        30 ~I~G~~G~GKT~la~~   45 (242)
T d1tf7a1          30 LVSGTSGTGKTLFSIQ   45 (242)
T ss_dssp             EEEESTTSSHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHH
Confidence            8889999999999954

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=90.57  E-value=0.073  Score=40.10  Aligned_cols=18  Identities=17%  Similarity=0.152  Sum_probs=16.4

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      -++|+.|.|||++|+.+-
T Consensus       158 ~~~g~~~~gk~~~~~~~~  175 (362)
T d1svma_         158 LFKGPIDSGKTTLAAALL  175 (362)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            888999999999999864

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=90.48  E-value=0.055  Score=40.64  Aligned_cols=16  Identities=25%  Similarity=0.464  Sum_probs=14.2

Q ss_pred             eEecCCCcHHHHHHhh
Q 046733           88 IVGIGGLGKIVVWKNI  103 (106)
Q Consensus        88 IvGmGGiGKTTLA~~V  103 (106)
                      ++|.+|+|||.||+.+
T Consensus       128 ~~G~pG~GKT~la~al  143 (321)
T d1w44a_         128 VTGKGNSGKTPLVHAL  143 (321)
T ss_dssp             EECSSSSCHHHHHHHH
T ss_pred             EECCCCccHHHHHHHH
Confidence            3699999999999975

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=89.36  E-value=0.084  Score=39.11  Aligned_cols=21  Identities=29%  Similarity=0.379  Sum_probs=17.8

Q ss_pred             CcceEecCCCcHHHHHHhhhc
Q 046733           85 DTVIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        85 ~~~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ++-|.|..|.|||||.+++..
T Consensus       168 nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGG
T ss_pred             CEEEEeeccccchHHHHHHhh
Confidence            358889999999999998754

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.23  E-value=0.11  Score=37.09  Aligned_cols=31  Identities=19%  Similarity=0.367  Sum_probs=22.4

Q ss_pred             hhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733           69 GDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        69 ~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V  103 (106)
                      ...+.|.++|..    .. .++|..|+|||||..++
T Consensus        84 ~g~~~L~~~l~~----kt~~~~G~SGVGKSTLiN~L  115 (225)
T d1u0la2          84 MGIEELKEYLKG----KISTMAGLSGVGKSSLLNAI  115 (225)
T ss_dssp             TTHHHHHHHHSS----SEEEEECSTTSSHHHHHHHH
T ss_pred             hhHhhHHHHhcC----CeEEEECCCCCCHHHHHHhh
Confidence            346666666632    23 78899999999998875

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=88.17  E-value=0.076  Score=36.73  Aligned_cols=15  Identities=27%  Similarity=0.357  Sum_probs=12.6

Q ss_pred             cceEecCCCcHHHHH
Q 046733           86 TVIVGIGGLGKIVVW  100 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA  100 (106)
                      +-|.|.+|.||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            478899999999753

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=87.10  E-value=0.12  Score=36.13  Aligned_cols=30  Identities=17%  Similarity=0.264  Sum_probs=18.9

Q ss_pred             cchhHHHHHHHHhcCCCCCcceEecCCCcHHHHH
Q 046733           67 RDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVW  100 (106)
Q Consensus        67 rd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA  100 (106)
                      .+.+-.++++.    ....+-|.|.+|.||||.+
T Consensus        12 L~~eQ~~~v~~----~~g~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          12 LNKEQQEAVRT----TEGPLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             SCHHHHHHHHC----CSSCEEEEECTTSCHHHHH
T ss_pred             CCHHHHHHHhC----CCCCEEEEecCCccHHHHH
Confidence            34445556651    1223477799999999864

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.46  E-value=0.15  Score=36.54  Aligned_cols=19  Identities=32%  Similarity=0.480  Sum_probs=17.1

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .|+|..|.|||++..+++|
T Consensus        29 ~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          29 SIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             EEECSTTSSHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            8999999999999988754

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=85.09  E-value=0.22  Score=34.30  Aligned_cols=17  Identities=24%  Similarity=0.472  Sum_probs=14.9

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|..|+||||||-.+
T Consensus        19 li~G~sG~GKS~lal~l   35 (177)
T d1knxa2          19 LLTGRSGIGKSECALDL   35 (177)
T ss_dssp             EEEESSSSSHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHH
Confidence            68899999999999754

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=85.03  E-value=0.2  Score=34.40  Aligned_cols=18  Identities=28%  Similarity=0.399  Sum_probs=15.2

Q ss_pred             cceEecCCCcHHHHHHhh
Q 046733           86 TVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        86 ~~IvGmGGiGKTTLA~~V  103 (106)
                      +-|.|..|+||||||-.+
T Consensus        17 vl~~G~sG~GKStlal~l   34 (176)
T d1kkma_          17 VLITGDSGVGKSETALEL   34 (176)
T ss_dssp             EEEECCTTSCHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHH
Confidence            368899999999999754

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=84.65  E-value=0.24  Score=33.74  Aligned_cols=17  Identities=29%  Similarity=0.442  Sum_probs=14.7

Q ss_pred             ceEecCCCcHHHHHHhh
Q 046733           87 VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~V  103 (106)
                      -|.|..|+||||||-.+
T Consensus        19 li~G~sg~GKS~la~~l   35 (169)
T d1ko7a2          19 LITGDSGIGKSETALEL   35 (169)
T ss_dssp             EEEESTTSSHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHH
Confidence            68899999999999653

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=84.53  E-value=0.22  Score=34.35  Aligned_cols=19  Identities=16%  Similarity=0.354  Sum_probs=15.4

Q ss_pred             Cc-ceEecCCCcHHHHHHhh
Q 046733           85 DT-VIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        85 ~~-~IvGmGGiGKTTLA~~V  103 (106)
                      .+ -|.|..|.|||||+..+
T Consensus        36 ~l~vi~G~~G~GKT~~~~~l   55 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQ   55 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHH
Confidence            34 77799999999998753

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.28  E-value=0.16  Score=35.22  Aligned_cols=19  Identities=42%  Similarity=0.699  Sum_probs=16.7

Q ss_pred             ceEecCCCcHHHHHHhhhc
Q 046733           87 VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy~  105 (106)
                      .|+|..|+||||+-.++.+
T Consensus        28 vlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             EEECCTTTCSTHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHHH
Confidence            8999999999999887743

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=83.86  E-value=0.33  Score=34.40  Aligned_cols=34  Identities=15%  Similarity=0.113  Sum_probs=22.8

Q ss_pred             HHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhhc
Q 046733           72 NKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIYW  105 (106)
Q Consensus        72 ~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy~  105 (106)
                      ..+..+|......+. -++|.++.|||++|.++.+
T Consensus        41 ~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          41 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHH
Confidence            334444433323344 8999999999999987654

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=82.72  E-value=0.4  Score=34.37  Aligned_cols=18  Identities=22%  Similarity=0.217  Sum_probs=16.3

Q ss_pred             ceEecCCCcHHHHHHhhh
Q 046733           87 VIVGIGGLGKIVVWKNIY  104 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~Vy  104 (106)
                      -++|.|+.|||+++.++.
T Consensus       108 ~l~G~~~tGKS~f~~~i~  125 (267)
T d1u0ja_         108 WLFGPATTGKTNIAEAIA  125 (267)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHHH
Confidence            888999999999998864

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.04  E-value=0.26  Score=36.92  Aligned_cols=32  Identities=9%  Similarity=0.250  Sum_probs=22.0

Q ss_pred             HHHHHHHhcCCCC-CcceEecCCCcHHHHHHhh
Q 046733           72 NKIINRLSALNDV-DTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        72 ~~lv~~L~~~~~~-~~~IvGmGGiGKTTLA~~V  103 (106)
                      +.|.+++.....- ++.|+|-.+.|||||+..+
T Consensus         5 ~~~~~lm~~~~~IRNI~iiGhvd~GKTTL~d~L   37 (341)
T d1n0ua2           5 DQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSL   37 (341)
T ss_dssp             HHHHHHHHCGGGEEEEEEECCGGGTHHHHHHHH
T ss_pred             HHHHHHhcCcccCcEEEEEeCCCCcHHHHHHHH
Confidence            4455544432222 3599999999999999865

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=81.78  E-value=0.31  Score=36.35  Aligned_cols=16  Identities=38%  Similarity=0.401  Sum_probs=13.6

Q ss_pred             ceEecCCCcHHHHHHh
Q 046733           87 VIVGIGGLGKIVVWKN  102 (106)
Q Consensus        87 ~IvGmGGiGKTTLA~~  102 (106)
                      -|.|.+|.||||++..
T Consensus       167 vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         167 VISGGPGTGKTTTVAK  182 (359)
T ss_dssp             EEECCTTSTHHHHHHH
T ss_pred             EEEcCCCCCceehHHH
Confidence            7889999999998743

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=81.62  E-value=0.61  Score=34.30  Aligned_cols=31  Identities=23%  Similarity=0.374  Sum_probs=22.8

Q ss_pred             HHHHHHhcCC-CCCcceEecCCCcHHHHHHhh
Q 046733           73 KIINRLSALN-DVDTVIVGIGGLGKIVVWKNI  103 (106)
Q Consensus        73 ~lv~~L~~~~-~~~~~IvGmGGiGKTTLA~~V  103 (106)
                      ++++.|.--. ..+..|+|-.|+|||+|+..+
T Consensus        32 r~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i   63 (289)
T d1xpua3          32 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNI   63 (289)
T ss_dssp             HHHHHHSCCBTTCEEEEEECSSSSHHHHHHHH
T ss_pred             eeeeecccccCCCeeeEeCCCCCCHHHHHHHH
Confidence            5777775322 224599999999999999764