Citrus Sinensis ID: 046740

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
MAKFLSSLNTHSMVSVVLLLLGLLVAILDTTSAQIVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNNVQNFANNVKFKYIAVGNEAKPGDDFAWYLVPAMRNIQNAINGANLGSQIKVSTAIESRALE
cccHHHcccHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccHHHHHHHHHHccccEEEEEcccHHHHHHHHccccEEEEcccccHHHHHHccHHHHHHHHHHcccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEccccccccc
ccHHHHHcccHHHHHHHHHHHHHHHHHccccccccEEEccccccccccHHHHHHHHHHHcccEEEEccccHHHHHHccccccEEEEEccHHHHHHHHHcHHHHHHHHHHHccccccccEEEEEEEEEcccHHccHHHHHHHHHHHHHHHHHHccccccEEEEccccccHcc
MAKFLSSLNTHSMVSVVLLLLGLLVAILDTTSAQIVVCYGmcgnnlpskpDVIALCYQNnirrmriydpnREALEALRGSNIevmlglpnndlrriasnqaesNTWVQNNVQNFANNVKFKYIAvgneakpgddfawYLVPAMRNIQNainganlgsqIKVSTAIESRALE
MAKFLSSLNTHSMVSVVLLLLGLLVAILDTTSAQIVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNNVQNFANNVKFKYIAVGNEAKPGDDFAWYLVPAMRNIQNAinganlgsqikVSTAIESRALE
MAKFLSSLNTHSMvsvvllllgllvailDTTSAQIVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVqnnvqnfannvkfkYIAVGNEAKPGDDFAWYLVPAMRNIQNAINGANLGSQIKVSTAIESRALE
********NTHSMVSVVLLLLGLLVAILDTTSAQIVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNNVQNFANNVKFKYIAVGNEAKPGDDFAWYLVPAMRNIQNAINGANLGSQI************
*************VSVVLLLLGLLVAILDTTSAQIVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNNVQNFANNVKFKYIAVGNEAKPGDDFAWYLVPAMRNIQNAINGANLGSQIKVSTAIESRALE
MAKFLSSLNTHSMVSVVLLLLGLLVAILDTTSAQIVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNNVQNFANNVKFKYIAVGNEAKPGDDFAWYLVPAMRNIQNAINGANLGSQIKVSTAIESRALE
*******LNTHSMVSVVLLLLGLLVAILDTTSAQIVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNNVQNFANNVKFKYIAVGNEAKPGDDFAWYLVPAMRNIQNAINGANLGSQIKVSTAIESRALE
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAKFLSSLNTHSMVSVVLLLLGLLVAILDTTSAQIVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNNVQNFANNVKFKYIAVGNEAKPGDDFAWYLVPAMRNIQNAINGANLGSQIKVSTAIESRALE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query171 2.2.26 [Sep-21-2011]
Q03773 347 Glucan endo-1,3-beta-gluc yes no 0.988 0.487 0.564 2e-50
P36401 339 Glucan endo-1,3-beta-gluc N/A no 0.807 0.407 0.640 7e-45
P52408 350 Glucan endo-1,3-beta-gluc N/A no 0.877 0.428 0.611 3e-44
P07979 370 Lichenase OS=Nicotiana pl N/A no 0.871 0.402 0.575 3e-42
Q03467 370 Glucan endo-1,3-beta-gluc N/A no 0.964 0.445 0.514 4e-41
P52407 374 Glucan endo-1,3-beta-gluc N/A no 0.883 0.403 0.551 2e-40
Q01413 360 Glucan endo-1,3-beta-gluc N/A no 0.877 0.416 0.558 1e-39
P23546 370 Glucan endo-1,3-beta-gluc N/A no 0.923 0.427 0.524 9e-39
P15797 371 Glucan endo-1,3-beta-gluc N/A no 0.923 0.425 0.524 1e-38
P27666 370 Glucan endo-1,3-beta-gluc N/A no 0.923 0.427 0.518 2e-38
>sp|Q03773|E13A_SOYBN Glucan endo-1,3-beta-glucosidase OS=Glycine max PE=1 SV=1 Back     alignment and function desciption
 Score =  197 bits (502), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 96/170 (56%), Positives = 129/170 (75%), Gaps = 1/170 (0%)

Query: 1   MAKFLSSLNTHSMVSVVLLLLGLLVAILDTTSAQIVVCYGMCGNNLPSKPDVIALCYQNN 60
           MAK+ SS  + SM ++  L + LL+    TT AQ  VCYG  GNNLP+  +V+AL  Q N
Sbjct: 1   MAKYHSSGKSSSMTAIAFLFI-LLITYTGTTDAQSGVCYGRLGNNLPTPQEVVALYNQAN 59

Query: 61  IRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNNVQNFANNVKF 120
           IRRMRIY P+ E LEALRGSNIE++L +PN++LR +AS+Q  +N WVQ+N++N+ANNV+F
Sbjct: 60  IRRMRIYGPSPEVLEALRGSNIELLLDIPNDNLRNLASSQDNANKWVQDNIKNYANNVRF 119

Query: 121 KYIAVGNEAKPGDDFAWYLVPAMRNIQNAINGANLGSQIKVSTAIESRAL 170
           +Y++VGNE KP   FA +LVPA+ NIQ AI+ A LG+Q+KVSTAI++ AL
Sbjct: 120 RYVSVGNEVKPEHSFAQFLVPALENIQRAISNAGLGNQVKVSTAIDTGAL 169
Is thought to be an important plant defense-related product against fungal pathogens. Is capable of releasing soluble and highly active elicitor molecules from fungus cell walls.
Glycine max (taxid: 3847)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 3EC: 9
>sp|P36401|E13H_TOBAC Glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q' OS=Nicotiana tabacum PE=1 SV=1 Back     alignment and function description
>sp|P52408|E13B_PRUPE Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1 Back     alignment and function description
>sp|P07979|GUB_NICPL Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3 Back     alignment and function description
>sp|Q03467|E13B_PEA Glucan endo-1,3-beta-glucosidase OS=Pisum sativum PE=2 SV=1 Back     alignment and function description
>sp|P52407|E13B_HEVBR Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis GN=HGN1 PE=1 SV=2 Back     alignment and function description
>sp|Q01413|E13B_SOLLC Glucan endo-1,3-beta-glucosidase B OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|P23546|E13E_TOBAC Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GGIB50 OS=Nicotiana tabacum PE=1 SV=1 Back     alignment and function description
>sp|P15797|E13B_TOBAC Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana tabacum PE=1 SV=2 Back     alignment and function description
>sp|P27666|E13F_TOBAC Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GLB OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query171
2274915 336 beta-1,3-glucanase [Citrus sinensis] 0.923 0.470 0.867 2e-71
147667132 337 beta-1,3-glucanase [Citrus unshiu] 0.929 0.471 0.838 9e-71
63333659 336 beta-1,3-glucanase class III [Citrus cle 0.894 0.455 0.838 2e-68
261942365 341 glucanase [Litchi chinensis] 0.953 0.478 0.664 3e-55
313600351 346 beta-1,3-glucanase [Malus hupehensis] 0.982 0.485 0.639 3e-50
16903144 343 beta-1,3-glucanase [Prunus persica] 0.970 0.483 0.625 6e-50
256372804 346 beta-1,3-glucanase [Malus hupehensis] 0.982 0.485 0.622 8e-49
351720981 347 glucan endo-1,3-beta-glucosidase precurs 0.988 0.487 0.564 1e-48
255646423 347 unknown [Glycine max] 0.988 0.487 0.564 1e-48
356571986 348 PREDICTED: glucan endo-1,3-beta-glucosid 0.994 0.488 0.558 1e-47
>gi|2274915|emb|CAA03908.1| beta-1,3-glucanase [Citrus sinensis] Back     alignment and taxonomy information
 Score =  273 bits (697), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 137/158 (86%), Positives = 145/158 (91%)

Query: 13  MVSVVLLLLGLLVAILDTTSAQIVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNRE 72
           M  VVL LLGLL+A LDTTSAQI VCYGM GNNLPSK DVIAL  QNNIRRMR+YDPNRE
Sbjct: 1   MAPVVLFLLGLLMATLDTTSAQIGVCYGMLGNNLPSKRDVIALYNQNNIRRMRLYDPNRE 60

Query: 73  ALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNNVQNFANNVKFKYIAVGNEAKPG 132
           ALEALRGSNIEVMLGLPN+DLRRIASNQAE+NTWVQNNV+NFANNVKFKYIAVGNEAKPG
Sbjct: 61  ALEALRGSNIEVMLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPG 120

Query: 133 DDFAWYLVPAMRNIQNAINGANLGSQIKVSTAIESRAL 170
           D+FA YLVPAMRNIQNAIN A LG+QIKVSTAIE+ AL
Sbjct: 121 DNFAQYLVPAMRNIQNAINRAGLGNQIKVSTAIETGAL 158

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147667132|gb|ABQ45848.1| beta-1,3-glucanase [Citrus unshiu] Back     alignment and taxonomy information
>gi|63333659|gb|AAY40462.1| beta-1,3-glucanase class III [Citrus clementina x Citrus reticulata] Back     alignment and taxonomy information
>gi|261942365|gb|ACY06774.1| glucanase [Litchi chinensis] Back     alignment and taxonomy information
>gi|313600351|gb|ADR71671.1| beta-1,3-glucanase [Malus hupehensis] Back     alignment and taxonomy information
>gi|16903144|gb|AAL30426.1|AF435089_1 beta-1,3-glucanase [Prunus persica] Back     alignment and taxonomy information
>gi|256372804|gb|ACU78080.1| beta-1,3-glucanase [Malus hupehensis] Back     alignment and taxonomy information
>gi|351720981|ref|NP_001238474.1| glucan endo-1,3-beta-glucosidase precursor [Glycine max] gi|1706546|sp|Q03773.1|E13A_SOYBN RecName: Full=Glucan endo-1,3-beta-glucosidase; AltName: Full=(1->3)-beta-glucan endohydrolase; Short=(1->3)-beta-glucanase; AltName: Full=Beta-1,3-endoglucanase; Flags: Precursor gi|169923|gb|AAA33946.1| beta-1,3-endoglucanase (EC 3.2.1.39) [Glycine max] Back     alignment and taxonomy information
>gi|255646423|gb|ACU23690.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356571986|ref|XP_003554151.1| PREDICTED: glucan endo-1,3-beta-glucosidase-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query171
TAIR|locus:2082518 341 BG3 ""beta-1,3-glucanase 3"" [ 0.801 0.401 0.528 1.4e-32
TAIR|locus:2082568 340 BG1 ""beta-1,3-glucanase 1"" [ 0.818 0.411 0.5 2.9e-32
TAIR|locus:2130329 344 AT4G16260 [Arabidopsis thalian 0.789 0.392 0.496 1.1e-30
TAIR|locus:2082543 339 BGL2 ""beta-1,3-glucanase 2"" 0.766 0.386 0.503 7.1e-29
TAIR|locus:2149917 337 AT5G20560 [Arabidopsis thalian 0.812 0.412 0.316 8.3e-19
TAIR|locus:2164991 506 AT5G56590 [Arabidopsis thalian 0.771 0.260 0.350 1.4e-18
TAIR|locus:2203206 346 AT1G77790 [Arabidopsis thalian 0.766 0.378 0.345 9.8e-17
TAIR|locus:2161710 465 AT5G55180 [Arabidopsis thalian 0.807 0.296 0.368 1.3e-16
TAIR|locus:2149279 345 BETAG4 ""beta-1,3-glucanase 4" 0.812 0.402 0.349 2.1e-16
TAIR|locus:2118339 534 AT4G29360 [Arabidopsis thalian 0.777 0.249 0.373 2.4e-16
TAIR|locus:2082518 BG3 ""beta-1,3-glucanase 3"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 75/142 (52%), Positives = 100/142 (70%)

Query:    29 DTTSAQIVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGL 88
             DT   QI VCYG  GNNL    +V+AL  Q NIRRMR+YDPN+E L ALRGSNIE++L +
Sbjct:    29 DTAVGQIGVCYGRNGNNLRPASEVVALYQQRNIRRMRLYDPNQETLNALRGSNIELVLDV 88

Query:    89 PNNDLRRIASNQAESNTWVXXXXXXXXXXXXXXYIAVGNEAKPGDDFAWYLVPAMRNIQN 148
             PN DL+R+AS+QAE++TWV              YI+VGNE +P D  A +++PAM+NI+ 
Sbjct:    89 PNPDLQRLASSQAEADTWVRNNVRNYANVTFR-YISVGNEVQPSDQAASFVLPAMQNIER 147

Query:   149 AINGANLGSQIKVSTAIESRAL 170
             A++  +LG  IKVSTAI++R +
Sbjct:   148 AVS--SLG--IKVSTAIDTRGI 165
GO:0003824 "catalytic activity" evidence=IEA
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0043169 "cation binding" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
GO:0008810 "cellulase activity" evidence=TAS
GO:0009617 "response to bacterium" evidence=IEP
GO:0048046 "apoplast" evidence=IDA
GO:0000165 "MAPK cascade" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009409 "response to cold" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009814 "defense response, incompatible interaction" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0019684 "photosynthesis, light reaction" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
GO:0045088 "regulation of innate immune response" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
TAIR|locus:2082568 BG1 ""beta-1,3-glucanase 1"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130329 AT4G16260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082543 BGL2 ""beta-1,3-glucanase 2"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149917 AT5G20560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164991 AT5G56590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2203206 AT1G77790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161710 AT5G55180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149279 BETAG4 ""beta-1,3-glucanase 4"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118339 AT4G29360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.39LOW CONFIDENCE prediction!
3rd Layer3.2.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query171
pfam00332 310 pfam00332, Glyco_hydro_17, Glycosyl hydrolases fam 3e-56
>gnl|CDD|215863 pfam00332, Glyco_hydro_17, Glycosyl hydrolases family 17 Back     alignment and domain information 
 Score =  178 bits (454), Expect = 3e-56
 Identities = 77/132 (58%), Positives = 103/132 (78%), Gaps = 1/132 (0%)

Query: 35  IVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLR 94
           I VCYG+ GNNLPS  DV++L   NNIRRMRIYDP+ +AL+ALRGS I V+LG+PN+DL 
Sbjct: 1   IGVCYGVKGNNLPSPSDVVSLYKSNNIRRMRIYDPDTKALKALRGSGINVILGVPNDDLA 60

Query: 95  RIASNQAESNTWVQNNVQNFANNVKFKYIAVGNEAKPGDDFAWYLVPAMRNIQNAINGAN 154
            +A +Q+ + +WVQ+NV+ +A  VK +YIAVGNE  PG   ++ LVPAMRNI+NA+  A 
Sbjct: 61  ELAGSQSNAASWVQDNVRPYAPKVKIRYIAVGNEVSPGTTQSF-LVPAMRNIRNALTAAG 119

Query: 155 LGSQIKVSTAIE 166
           LG++IKVST++ 
Sbjct: 120 LGNKIKVSTSVR 131

Length = 310

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 171
PF00332 310 Glyco_hydro_17: Glycosyl hydrolases family 17; Int 100.0
COG5309 305 Exo-beta-1,3-glucanase [Carbohydrate transport and 98.76
PF03198 314 Glyco_hydro_72: Glucanosyltransferase; InterPro: I 97.37
PF00150 281 Cellulase: Cellulase (glycosyl hydrolase family 5) 91.12
PRK10150 604 beta-D-glucuronidase; Provisional 89.8
PF00925169 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: 88.19
PF02836 298 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM 88.16
smart0048167 POLIIIAc DNA polymerase alpha chain like domain. D 84.11
PRK00393197 ribA GTP cyclohydrolase II; Reviewed 82.43
TIGR00505191 ribA GTP cyclohydrolase II. Several members of the 82.07
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3 Back     alignment and domain information 
Probab=100.00  E-value=9.9e-48  Score=333.65  Aligned_cols=136  Identities=49%  Similarity=0.751  Sum_probs=115.9

Q ss_pred             eeEeecCCCCCCCChHHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCCcchHHHhhhChHHHHHHHHhhcccc
Q 046740           35 IVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNNVQNF  114 (171)
Q Consensus        35 iGVnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vpN~~l~~lAss~~~A~~WV~~nV~py  114 (171)
                      |||||||+|||||+|++||+|||+++|++|||||+|+++|+||+||||+|+++|||++++++++++..|..||++||.||
T Consensus         1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~   80 (310)
T PF00332_consen    1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY   80 (310)
T ss_dssp             EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred             CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEEecCCCCCCCcchhhhhHHHHHHHHHHHhCCCCCCcEEeccccCCcCC
Q 046740          115 ANNVKFKYIAVGNEAKPGDDFAWYLVPAMRNIQNAINGANLGSQIKVSTAIESRALE  171 (171)
Q Consensus       115 ~p~~~I~~IaVGNEv~~~~~~~~~lvPAm~Ni~~AL~~~gL~~~IKVSTa~~~~vL~  171 (171)
                      +|+++|++|+||||+++.... .+|||||+|+|+||.++||+++|||||+|++++|+
T Consensus        81 ~~~~~i~~i~VGnEv~~~~~~-~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~  136 (310)
T PF00332_consen   81 LPAVNIRYIAVGNEVLTGTDN-AYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLS  136 (310)
T ss_dssp             TTTSEEEEEEEEES-TCCSGG-GGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEE
T ss_pred             CcccceeeeecccccccCccc-eeeccHHHHHHHHHHhcCcCCcceecccccccccc
Confidence            999999999999999986532 28999999999999999999999999999999873

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane Back     alignment and domain information
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PRK10150 beta-D-glucuronidase; Provisional Back     alignment and domain information
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin Back     alignment and domain information
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3 Back     alignment and domain information
>smart00481 POLIIIAc DNA polymerase alpha chain like domain Back     alignment and domain information
>PRK00393 ribA GTP cyclohydrolase II; Reviewed Back     alignment and domain information
>TIGR00505 ribA GTP cyclohydrolase II Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query171
2cyg_A 312 Crystal Structure At 1.45- Resolution Of The Major 4e-34
3em5_A 316 Crystal Structure Of A Native Endo Beta-1,3-Glucana 4e-31
4gzi_A 323 Active-site Mutant Of Potato Endo-1,3-beta-glucanas 4e-27
3ur7_A 323 Higher-density Crystal Structure Of Potato Endo-1,3 4e-27
1aq0_A 306 Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space G 1e-18
1ghs_A 306 The Three-Dimensional Structures Of Two Plant Beta- 6e-17
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome Length = 312 Back     alignment and structure 
Iteration: 1

 Score =  140 bits (353), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/136 (50%), Positives = 93/136 (68%)
Query: 35  IVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLR 94
           I VCYGM GNNLP   +V++L   NNI RMR+YDPN+ AL+ALR SNI+V+L +P +D++
Sbjct: 1   IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 95  RIASNQAESNTWVXXXXXXXXXXXXXXYIAVGNEAKPGDDFAWYLVPAMRNIQNAINGAN 154
            +ASN + +  W+              YIAVGNE  PG D A Y++PAMRNI NA++ A 
Sbjct: 61  SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSDLAQYILPAMRNIYNALSSAG 120
Query: 155 LGSQIKVSTAIESRAL 170
           L +QIKVSTA+++  L
Sbjct: 121 LQNQIKVSTAVDTGVL 136
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis Length = 316 Back     alignment and structure
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In Complex With Laminaratriose Length = 323 Back     alignment and structure
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase Length = 323 Back     alignment and structure
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group Length = 306 Back     alignment and structure
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities Length = 306 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query171
2cyg_A 312 Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (be 7e-44
1ghs_A 306 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulg 5e-41
3em5_A 316 Beta-1,3-glucanase; glycoprotein, rossmann fold, ( 1e-38
3ur8_A 323 Glucan endo-1,3-beta-D-glucosidase; glucoside hydr 1e-36
1aq0_A 306 1,3-1,4-beta-glucanase; hydrolase, glycosidase, gl 2e-35
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>2cyg_A Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (beta-alpha)8-TIM-barrel, B-cell epitopes, allergen, banana, hydrolase; 1.45A {Musa acuminata} SCOP: c.1.8.3 Length = 312 Back     alignment and structure
 Score =  146 bits (369), Expect = 7e-44
 Identities = 72/135 (53%), Positives = 100/135 (74%)

Query: 37  VCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRRI 96
           VCYGM GNNLP   +V++L   NNI RMR+YDPN+ AL+ALR SNI+V+L +P +D++ +
Sbjct: 3   VCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQSL 62

Query: 97  ASNQAESNTWVQNNVQNFANNVKFKYIAVGNEAKPGDDFAWYLVPAMRNIQNAINGANLG 156
           ASN + +  W++ NV  +  +V F+YIAVGNE  PG D A Y++PAMRNI NA++ A L 
Sbjct: 63  ASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSDLAQYILPAMRNIYNALSSAGLQ 122

Query: 157 SQIKVSTAIESRALE 171
           +QIKVSTA+++  L 
Sbjct: 123 NQIKVSTAVDTGVLG 137
>1ghs_A 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulgare} SCOP: c.1.8.3 Length = 306 Back     alignment and structure
>3em5_A Beta-1,3-glucanase; glycoprotein, rossmann fold, (beta-alpha)8-TIM-barrel, glyco hydrolase, allergen; HET: NAG FUC MAN; 2.50A {Hevea brasiliensis} PDB: 3f55_A* Length = 316 Back     alignment and structure
>3ur8_A Glucan endo-1,3-beta-D-glucosidase; glucoside hydrolase, GH17 family, pathogenesis-related class protein (PR-2), TIM barrel; 1.26A {Solanum tuberosum} PDB: 3ur7_A Length = 323 Back     alignment and structure
>1aq0_A 1,3-1,4-beta-glucanase; hydrolase, glycosidase, glycoprotein, glycosylated protein; HET: NAG; 2.00A {Hordeum vulgare} SCOP: c.1.8.3 PDB: 1ghr_A Length = 306 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query171
3em5_A 316 Beta-1,3-glucanase; glycoprotein, rossmann fold, ( 100.0
3ur8_A 323 Glucan endo-1,3-beta-D-glucosidase; glucoside hydr 100.0
1aq0_A 306 1,3-1,4-beta-glucanase; hydrolase, glycosidase, gl 100.0
1ghs_A 306 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulg 100.0
2cyg_A 312 Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (be 100.0
2w61_A 555 GAS2P, glycolipid-anchored surface protein 2; glyc 99.25
1bqc_A 302 Protein (beta-mannanase); glycosyl hydrolase, fami 96.94
3nco_A 320 Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1 96.83
2whl_A 294 Beta-mannanase, baman5; glycoside hydrolase, hydro 96.49
2cks_A 306 Endoglucanase E-5; carbohydrate metabolism, polysa 96.01
3jug_A 345 Beta-mannanase; TIM-barrel, glycosidase, hydrolase 95.99
1wky_A 464 Endo-beta-1,4-mannanase; TIM barrel, catalytic dom 95.98
3aof_A 317 Endoglucanase; glycosyl hydrolase family 5, cellul 95.98
3pzt_A 327 Endoglucanase; alpha/beta barrel, glycosyl hydrola 95.13
1qnr_A 344 Endo-1,4-B-D-mannanase; hydrolase, anomalous scatt 95.07
1h1n_A 305 Endo type cellulase ENGI; hydrolase, glycosyl hydr 94.79
4hty_A 359 Cellulase; (alpha/beta)8 barrel, family 5 endogluc 94.78
1egz_A 291 Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CL 94.68
1ceo_A 343 Cellulase CELC; glycosyl hydrolase, family A/5 of 94.65
3vup_A 351 Beta-1,4-mannanase; TIM barrel, digestive fluid, H 94.63
1fob_A 334 Beta-1,4-galactanase; B/A barrel, glycosyl hydrola 94.47
1hjs_A 332 Beta-1,4-galactanase; 4-galactanases, family 53 gl 94.36
4awe_A 387 Endo-beta-D-1,4-mannanase; hydrolase, endo-mannana 93.98
1vjz_A 341 Endoglucanase; TM1752, structural genomics, JCSG, 93.92
7a3h_A 303 Endoglucanase; hydrolase, cellulose degradation, g 93.64
1edg_A 380 Endoglucanase A; family A, cellulases, xylanases, 93.55
1tvn_A 293 Cellulase, endoglucanase G; glycoside hydrolase, C 93.52
1ur4_A 399 Galactanase; hydrolase, beta-1, glycoside hydrolas 93.43
2c0h_A 353 Mannan endo-1,4-beta-mannosidase; hydrolase, signa 93.07
3fn9_A 692 Putative beta-galactosidase; structural genomics, 92.98
1rh9_A 373 Endo-beta-mannanase; endo-beta-mannase, retaining, 92.98
1uuq_A 440 Mannosyl-oligosaccharide glucosidase; hydrolase, m 92.66
1ece_A 358 Endocellulase E1; glycosyl hydrolase; HET: BGC; 2. 92.34
3qho_A 458 Endoglucanase, 458AA long hypothetical endo-1,4-be 92.23
3civ_A 343 Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1. 92.07
3cmg_A 667 Putative beta-galactosidase; structural genomics, 92.07
1g01_A 364 Endoglucanase; alpha/beta barrel, TIM barrel, hydr 91.18
3lpf_A 605 Beta-glucuronidase; alpha/beta barrel, sugar-bindi 90.75
3pzg_A 383 Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 90.74
3icg_A 515 Endoglucanase D; cellulase, xylanase, carbohydrate 90.01
3hn3_A 613 Beta-G1, beta-glucuronidase; lysosomal enzyme, aci 89.81
2y8k_A 491 Arabinoxylanase, carbohydrate binding family 6; hy 87.74
2c7f_A 513 Alpha-L-arabinofuranosidase; glycosidase, xylan, a 86.46
2vrq_A 496 Alpha-L-arabinofuranosidase; hydrolase, glycosidas 86.05
1qw9_A 502 Arabinosidase, alpha-L-arabinofuranosidase; hydrol 86.01
3ayr_A 376 Endoglucanase; TIM barrel, hydrolase, carbohydrate 85.56
2osx_A 481 Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel 85.41
3vny_A 488 Beta-glucuronidase; TIM barrel, greek-KEY, glycosi 83.96
1kwg_A 645 Beta-galactosidase; TIM barrel, glycoside hydrolas 82.99
3gm8_A 801 Glycoside hydrolase family 2, candidate beta-GLYC; 81.84
3ndz_A 345 Endoglucanase D; cellotriose, xylanase, carbohydra 81.47
1yq2_A 1024 Beta-galactosidase; glycosyl hydrolase family 2, T 80.6
3bga_A 1010 Beta-galactosidase; NYSGXRC, protein structure ini 80.08
>3em5_A Beta-1,3-glucanase; glycoprotein, rossmann fold, (beta-alpha)8-TIM-barrel, glyco hydrolase, allergen; HET: NAG FUC MAN; 2.50A {Hevea brasiliensis} SCOP: c.1.8.3 PDB: 3f55_A* Back     alignment and structure
Probab=100.00  E-value=3.4e-50  Score=349.11  Aligned_cols=135  Identities=56%  Similarity=0.922  Sum_probs=130.9

Q ss_pred             eeEeecCCCCCCCChHHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCCcchHHHhhhChHHHHHHHHhhcccc
Q 046740           35 IVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNNVQNF  114 (171)
Q Consensus        35 iGVnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vpN~~l~~lAss~~~A~~WV~~nV~py  114 (171)
                      ||||||++|||||||++||+|||++||++|||||+|+++|+||++|||+|+|||||+++++++ ++++|++||++||.+|
T Consensus         2 iGvnyG~~~~nlp~p~~vv~llks~gi~~VRlYdaD~~vL~Al~~sgi~v~vGV~n~~l~~la-~~~~A~~WV~~nV~~y   80 (316)
T 3em5_A            2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQSLT-NPSNAKSWVQKNVRGF   80 (316)
T ss_dssp             CEEECCCCCTTCCCHHHHHHHHHHTTCCEEECSSCCHHHHHHHTTCCCEEEEEECGGGHHHHT-SHHHHHHHHHHHTGGG
T ss_pred             eeEEcCcCCCCCCCHHHHHHHHHHcCCCEEEEecCCHHHHHHhhcCCceEEEecccchhhhcc-CHHHHHHHHHHhhhhc
Confidence            899999999999999999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             CCCceEEEEEecCCCCCCCcc----hhhhhHHHHHHHHHHHhCCCCCCcEEeccccCCcC
Q 046740          115 ANNVKFKYIAVGNEAKPGDDF----AWYLVPAMRNIQNAINGANLGSQIKVSTAIESRAL  170 (171)
Q Consensus       115 ~p~~~I~~IaVGNEv~~~~~~----~~~lvPAm~Ni~~AL~~~gL~~~IKVSTa~~~~vL  170 (171)
                      +|.++|+||+||||++..++.    .+.|+|||+|||+||+++||+++||||||+++++|
T Consensus        81 ~p~~~I~~IaVGNEvl~~~~~t~~~~~~LvpAm~nv~~AL~~aGL~~~IkVsT~~s~~vl  140 (316)
T 3em5_A           81 WSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAIRSAGLQDQIKVSTAIDLTLV  140 (316)
T ss_dssp             TTTSCEEEEEEEESCCTTCTTTGGGHHHHHHHHHHHHHHHHHTTCTTTSEEEEEECTTSE
T ss_pred             CCCceEEEEEEecccccCCCccccCHHHHHHHHHHHHHHHHHCCCCCceEEEeccccccc
Confidence            999999999999999986543    78999999999999999999989999999999986
>3ur8_A Glucan endo-1,3-beta-D-glucosidase; glucoside hydrolase, GH17 family, pathogenesis-related class protein (PR-2), TIM barrel; 1.26A {Solanum tuberosum} PDB: 3ur7_A Back     alignment and structure
>1aq0_A 1,3-1,4-beta-glucanase; hydrolase, glycosidase, glycoprotein, glycosylated protein; HET: NAG; 2.00A {Hordeum vulgare} SCOP: c.1.8.3 PDB: 1ghr_A Back     alignment and structure
>1ghs_A 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulgare} SCOP: c.1.8.3 Back     alignment and structure
>2cyg_A Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (beta-alpha)8-TIM-barrel, B-cell epitopes, allergen, banana, hydrolase; 1.45A {Musa acuminata} SCOP: c.1.8.3 Back     alignment and structure
>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A* Back     alignment and structure
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A* Back     alignment and structure
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A* Back     alignment and structure
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A Back     alignment and structure
>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A* Back     alignment and structure
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus} Back     alignment and structure
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3 Back     alignment and structure
>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A* Back     alignment and structure
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A Back     alignment and structure
>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A* Back     alignment and structure
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A Back     alignment and structure
>4hty_A Cellulase; (alpha/beta)8 barrel, family 5 endoglucanase, hydrolase; 2.00A {Uncultured bacterium} PDB: 4hu0_A* Back     alignment and structure
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3 Back     alignment and structure
>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A Back     alignment and structure
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai} Back     alignment and structure
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A Back     alignment and structure
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A* Back     alignment and structure
>4awe_A Endo-beta-D-1,4-mannanase; hydrolase, endo-mannanase, glycosyl hydrolase, GH5; HET: NAG; 1.40A {Neurospora sitophila} Back     alignment and structure
>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3 Back     alignment and structure
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A Back     alignment and structure
>1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrol cellulose degradation; 1.60A {Clostridium cellulolyticum} SCOP: c.1.8.3 Back     alignment and structure
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A* Back     alignment and structure
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A* Back     alignment and structure
>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3 Back     alignment and structure
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis} Back     alignment and structure
>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3 Back     alignment and structure
>1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase, mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uz4_A* Back     alignment and structure
>1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A Back     alignment and structure
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A* Back     alignment and structure
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius} Back     alignment and structure
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis} Back     alignment and structure
>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A* Back     alignment and structure
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A Back     alignment and structure
>3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A* Back     alignment and structure
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase, glycosidase, disease mutat glycoprotein, hydrolase, lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN GUP; 1.70A {Homo sapiens} PDB: 1bhg_A* Back     alignment and structure
>2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum} Back     alignment and structure
>2c7f_A Alpha-L-arabinofuranosidase; glycosidase, xylan, arabinan, hydrolase; HET: AHR; 2.7A {Clostridium thermocellum} SCOP: b.71.1.2 c.1.8.3 PDB: 2c8n_A Back     alignment and structure
>2vrq_A Alpha-L-arabinofuranosidase; hydrolase, glycosidase; HET: XYP; 2.00A {Thermobacillus xylanilyticus} PDB: 2vrk_A Back     alignment and structure
>1qw9_A Arabinosidase, alpha-L-arabinofuranosidase; hydrolase; HET: KHP; 1.20A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 1pz2_A* 1qw8_A* 1pz3_A Back     alignment and structure
>3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding; 2.00A {Piromyces rhizinflatus} PDB: 3ays_A* Back     alignment and structure
>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A* Back     alignment and structure
>3vny_A Beta-glucuronidase; TIM barrel, greek-KEY, glycoside hydrolase family 79, hydrol; 1.50A {Acidobacterium capsulatum} PDB: 3vnz_A* 3vo0_A* Back     alignment and structure
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A* Back     alignment and structure
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus} Back     alignment and structure
>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A* Back     alignment and structure
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 Back     alignment and structure
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 171
d2cyga1 312 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana ( 6e-47
d1ghsa_ 306 c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeu 2e-42
d1aq0a_ 306 c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeu 3e-39
>d2cyga1 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana (Musa acuminata), 1,3-beta-glucanase [TaxId: 4641]} Length = 312 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Plant beta-glucanases
species: Banana (Musa acuminata), 1,3-beta-glucanase [TaxId: 4641]

 Score =  153 bits (387), Expect = 6e-47
 Identities = 72/132 (54%), Positives = 99/132 (75%)

Query: 35  IVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLR 94
           I VCYGM GNNLP   +V++L   NNI RMR+YDPN+ AL+ALR SNI+V+L +P +D++
Sbjct: 1   IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60

Query: 95  RIASNQAESNTWVQNNVQNFANNVKFKYIAVGNEAKPGDDFAWYLVPAMRNIQNAINGAN 154
            +ASN + +  W++ NV  +  +V F+YIAVGNE  PG D A Y++PAMRNI NA++ A 
Sbjct: 61  SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSDLAQYILPAMRNIYNALSSAG 120

Query: 155 LGSQIKVSTAIE 166
           L +QIKVSTA++
Sbjct: 121 LQNQIKVSTAVD 132
>d1ghsa_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum vulgare), 1,3-beta-glucanase [TaxId: 4513]} Length = 306 Back     information, alignment and structure
>d1aq0a_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum vulgare), 1,3-1,4-beta-glucanase [TaxId: 4513]} Length = 306 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query171
d2cyga1 312 Plant beta-glucanases {Banana (Musa acuminata), 1, 100.0
d1ghsa_ 306 Plant beta-glucanases {Barley (Hordeum vulgare), 1 100.0
d1aq0a_ 306 Plant beta-glucanases {Barley (Hordeum vulgare), 1 100.0
d1wkya2 297 Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 2449 97.6
d1bqca_ 302 Beta-mannanase {Thermomonospora fusca [TaxId: 2021 97.55
d1uuqa_ 410 Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} 95.51
d2c0ha1 350 endo-1,4-beta-mannosidase {Blue mussel (Mytilus ed 95.51
d1bhga3 304 beta-Glucuronidase, domain 3 {Human (Homo sapiens) 95.37
d1tvna1 293 Endoglucanase Cel5a {Pseudoalteromonas haloplankti 95.22
d7a3ha_ 300 Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId 94.76
d1egza_ 291 Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: 94.2
d2vzsa5 339 Exochitosanase CsxA {Amycolatopsis orientalis [Tax 94.19
d1jz8a5 292 beta-Galactosidase, domain 3 {Escherichia coli [Ta 93.63
d1qnra_ 344 Beta-mannanase {Trichoderma reesei [TaxId: 51453]} 93.02
d1ecea_ 358 Endocellulase E1 {Acidothermus cellulolyticus [Tax 92.78
d1yq2a5 297 beta-Galactosidase, domain 3 {Arthrobacter sp. c2- 91.99
d1foba_ 334 Beta-1,4-galactanase {Fungus (Aspergillus aculeatu 91.78
d1hjsa_ 332 Beta-1,4-galactanase {Thielavia heterothallica, ak 91.73
d2je8a5 348 Five-domain beta-mannosidase, domain 3 {Bacteroide 90.87
d1h1na_ 305 Endocellulase EngI {Thermoascus aurantiacus [TaxId 89.74
d1ur4a_ 387 Beta-1,4-galactanase {Bacillus licheniformis [TaxI 89.29
d1kwga2 393 A4 beta-galactosidase {Thermus thermophilus [TaxId 87.2
d1rh9a1 370 Beta-mannanase {Tomato (Lycopersicon esculentum) [ 86.83
d1ceoa_ 340 Endoglucanase CelC {Clostridium thermocellum [TaxI 86.14
d1vjza_ 325 Endoglucanase homologue TM1752 {Thermotoga maritim 80.41
d1tg7a5 354 Beta-galactosidase LacA, N-terminal domain {Penici 80.27
>d2cyga1 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana (Musa acuminata), 1,3-beta-glucanase [TaxId: 4641]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Plant beta-glucanases
species: Banana (Musa acuminata), 1,3-beta-glucanase [TaxId: 4641]

Probab=100.00  E-value=5.1e-43  Score=299.44  Aligned_cols=136  Identities=54%  Similarity=0.909  Sum_probs=131.5

Q ss_pred             eeEeecCCCCCCCChHHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCCcchHHHhhhChHHHHHHHHhhcccc
Q 046740           35 IVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNNVQNF  114 (171)
Q Consensus        35 iGVnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vpN~~l~~lAss~~~A~~WV~~nV~py  114 (171)
                      ||||||+.|||||||+||++|||++||++||+||+||++|+|+++|||+|+||+||+++.+++++++.|++||+++|.+|
T Consensus         1 ~gi~yg~~~~nlps~~~vv~lLk~~~i~~IRlY~~d~~vL~A~~~tgi~v~lGv~n~~l~~~~~~~~~a~~wv~~~v~~~   80 (312)
T d2cyga1           1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQSLASNPSAAGDWIRRNVVAY   80 (312)
T ss_dssp             CEEECCCCCSSCCCHHHHHHHHHHTTCCEEEESSCCHHHHHHHTTSCCEEEEEECHHHHHHHHHCTTHHHHHHHHHTGGG
T ss_pred             CeeeCCCccCCCCCHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHhcCCEEEEeeccchhhhccCCHHHHHHHHHHHHhcc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEEecCCCCCCCcchhhhhHHHHHHHHHHHhCCCCCCcEEeccccCCcC
Q 046740          115 ANNVKFKYIAVGNEAKPGDDFAWYLVPAMRNIQNAINGANLGSQIKVSTAIESRAL  170 (171)
Q Consensus       115 ~p~~~I~~IaVGNEv~~~~~~~~~lvPAm~Ni~~AL~~~gL~~~IKVSTa~~~~vL  170 (171)
                      +|.++|++|+||||++..++....++|+|+|+|++|+++|+.+.||++|+++++++
T Consensus        81 ~~~~~I~~IaVGNE~l~~~~~~~~~lpa~~~~~~aL~~~g~~~~i~~t~~~~~~~~  136 (312)
T d2cyga1          81 WPSVSFRYIAVGNELIPGSDLAQYILPAMRNIYNALSSAGLQNQIKVSTAVDTGVL  136 (312)
T ss_dssp             TTTSEEEEEEEEESCTTTSTTGGGHHHHHHHHHHHHHHTTCTTTSEEEEEEEGGGB
T ss_pred             CCCceEEEEEecCEEeeCCcCchhhcccHHHHHHHHHHCCCCCCceeeeeeeeecc
Confidence            99999999999999997665678899999999999999999999999999998875
>d1ghsa_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum vulgare), 1,3-beta-glucanase [TaxId: 4513]} Back     information, alignment and structure
>d1aq0a_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum vulgare), 1,3-1,4-beta-glucanase [TaxId: 4513]} Back     information, alignment and structure
>d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 244966]} Back     information, alignment and structure
>d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]} Back     information, alignment and structure
>d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} Back     information, alignment and structure
>d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tvna1 c.1.8.3 (A:1-293) Endoglucanase Cel5a {Pseudoalteromonas haloplanktis [TaxId: 228]} Back     information, alignment and structure
>d7a3ha_ c.1.8.3 (A:) Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId: 76935]} Back     information, alignment and structure
>d1egza_ c.1.8.3 (A:) Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d2vzsa5 c.1.8.3 (A:336-674) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1jz8a5 c.1.8.3 (A:334-625) beta-Galactosidase, domain 3 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]} Back     information, alignment and structure
>d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]} Back     information, alignment and structure
>d1yq2a5 c.1.8.3 (A:313-609) beta-Galactosidase, domain 3 {Arthrobacter sp. c2-2 [TaxId: 192168]} Back     information, alignment and structure
>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]} Back     information, alignment and structure
>d2je8a5 c.1.8.3 (A:331-678) Five-domain beta-mannosidase, domain 3 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1h1na_ c.1.8.3 (A:) Endocellulase EngI {Thermoascus aurantiacus [TaxId: 5087]} Back     information, alignment and structure
>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} Back     information, alignment and structure
>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Back     information, alignment and structure
>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure