Citrus Sinensis ID: 046761

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MMTTFISFASSSSLILQPLKPPKSSRLSKAKTLTSTIKATSSQPKPNNANAKKPTSRNRRRSSYGSSRRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL
Secondary Structure (PSIPRED)
ccEEEEEccccccEEEEcccccccccccccEEEEEEEEccccccccccccccccccccccccccccHHHHHHHHccccccEEEEcccccccEEEEEcccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccEEccccccccccccccccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHcccEEEEccccccccEEEEEcccHHHHHHHHcc
Coil and Loop (DISEMBL)
MMTTFISFasssslilqplkppkssrlskaKTLTSTikatssqpkpnnanakkptsrnrrrssygssrRSALKKTFAQeqvtfttpvssdpcvgiiGGGMARLALSLVL
Flexible Loop (DISEMBL)
MMTTFIsfasssslilqplkppkssrlsKAKTLTstikatssqpkpnnanakkptsrnrrrssygssrrsalkktfaqeqvtfttpvssdpcvGIIGGGMARLALSLVL
Low Complexity Region (SEG)
mmttfisfasssslilQPLKPPKSSRLSKAKTLTSTIKATSSQPKPNNANAKKPTsrnrrrssygssrrsALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL
Disordered region (IsUnstruct)
********************************************************************************VTFTTPVSSDPCVGIIGGGMARLALS***
Disordered Region (DISOPRED)
**TTFISFASSSSLIL************************************************************AQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL
Disordered Region (DISEMBL)
MMTTFISFASSSSLILQPLK*****************************************************KTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL
Disordered Region (DISPRO)
**TTFI*FASSSSLILQPLKPPKSSRLSKAKTLTSTIKATS*************************SRRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMTTFISFASSSSLILQPLKPPKSSRLSKAKTLTSTIKATSSQPKPNNANAKKPTSRNRRRSSYGSSRRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
449443231	545	PREDICTED: uncharacterized protein LOC10	0.954	0.190	0.504	7e-19
449483109	536	PREDICTED: uncharacterized protein LOC10	0.954	0.194	0.504	7e-19
224130614	496	predicted protein [Populus trichocarpa]	0.880	0.193	0.552	4e-18
255580905	467	conserved hypothetical protein [Ricinus	0.798	0.186	0.539	5e-16
225463946	467	PREDICTED: uncharacterized protein LOC10	0.669	0.156	0.539	2e-14
296087896	518	unnamed protein product [Vitis vinifera]	0.669	0.140	0.539	2e-14
18396966	486	FAD/NAD(P)-binding oxidoreductase domain	0.871	0.195	0.474	7e-13
297828968	485	oxidoreductase [Arabidopsis lyrata subsp	0.871	0.195	0.463	2e-12
226530158	505	uncharacterized protein LOC100272440 [Ze	0.458	0.099	0.58	7e-08
414868816	384	TPA: hypothetical protein ZEAMMB73_11144	0.458	0.130	0.58	7e-08

>gi|449443231|ref|XP_004139383.1| PREDICTED: uncharacterized protein LOC101219713 [Cucumis sativus]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/121 (50%), Positives = 79/121 (65%), Gaps = 17/121 (14%)

Query: 1   MMTTFISFASSSSLILQPLKPPKSSRLSKAKTLTST----IKATSSQPKPNN-------- 48
           + T FIS    SSLILQPLK  + +  S +K  ++T    + A+ SQPKPN+        
Sbjct: 4   LFTPFIS----SSLILQPLKFSQLTIFS-SKPYSNTNFIPVVASHSQPKPNSKHNSRKPT 58

Query: 49  ANAKKPTSRNRRRSSYGSSRRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLV 108
            +  KPTS+ RR+SSYG+SRRS LKKTF QEQVTFT+ +S DP + IIGGGMA +  +L 
Sbjct: 59  MDGSKPTSKFRRKSSYGTSRRSILKKTFNQEQVTFTSALSDDPLIAIIGGGMAGIMCALS 118

Query: 109 L 109
           L
Sbjct: 119 L 119

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483109|ref|XP_004156495.1| PREDICTED: uncharacterized protein LOC101226129 [Cucumis sativus]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/121 (50%), Positives = 79/121 (65%), Gaps = 17/121 (14%)

Query: 1   MMTTFISFASSSSLILQPLKPPKSSRLSKAKTLTST----IKATSSQPKPNN-------- 48
           + T FIS    SSLILQPLK  + +  S +K  ++T    + A+ SQPKPN+        
Sbjct: 4   LFTPFIS----SSLILQPLKFSQLTIFS-SKPYSNTNFIPVVASHSQPKPNSKHNSRKPT 58

Query: 49  ANAKKPTSRNRRRSSYGSSRRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLV 108
            +  KPTS+ RR+SSYG+SRRS LKKTF QEQVTFT+ +S DP + IIGGGMA +  +L 
Sbjct: 59  MDGSKPTSKFRRKSSYGTSRRSILKKTFNQEQVTFTSALSDDPLIAIIGGGMAGIMCALS 118

Query: 109 L 109
           L
Sbjct: 119 L 119

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130614|ref|XP_002328333.1| predicted protein [Populus trichocarpa] gi|222838048|gb|EEE76413.1| predicted protein [Populus trichocarpa]

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/114 (55%), Positives = 72/114 (63%), Gaps = 18/114 (15%)

Query: 6   ISFASSSSLILQPLKPP------KSSRLSKAKTLTSTIKATSSQPKPNN----ANAKKPT 55
           ISF SS  L LQPLK         +SR    KTLT T        KPNN     + +KPT
Sbjct: 11  ISFLSS--LTLQPLKIKTHKKSLSTSRSEPIKTLTCTTS------KPNNKSPTMDGRKPT 62

Query: 56  SRNRRRSSYGSSRRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109
           S+  R+SSYG+SRRS LKKTF QEQVTFT+ +SSDP VGIIGGGMA L  +L L
Sbjct: 63  SKKTRKSSYGTSRRSVLKKTFIQEQVTFTSQLSSDPHVGIIGGGMAGLLCALSL 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580905|ref|XP_002531271.1| conserved hypothetical protein [Ricinus communis] gi|223529104|gb|EEF31084.1| conserved hypothetical protein [Ricinus communis]

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 55/102 (53%), Positives = 67/102 (65%), Gaps = 15/102 (14%)

Query: 14  LILQPLKPPKSSRLSKAK------TLTSTIKATSSQPKPNNANAKKPTSRNRRRSSYGSS 67
           +  QP+K P  S  S A       TLT T   T+SQP       K+PTS+NR++SSYG+S
Sbjct: 17  ITFQPIKIPLKSSTSTATKSSKALTLTCT---TTSQPN------KRPTSKNRKKSSYGTS 67

Query: 68  RRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109
           RRS LKKTF+QEQV F+ PVS DP VGIIGGGMA L  ++ L
Sbjct: 68  RRSVLKKTFSQEQVNFSFPVSDDPHVGIIGGGMAGLVCAVNL 109

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463946|ref|XP_002268010.1| PREDICTED: uncharacterized protein LOC100241002 [Vitis vinifera]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 53/76 (69%), Gaps = 3/76 (3%)

Query: 37  IKATSSQPKPNNA---NAKKPTSRNRRRSSYGSSRRSALKKTFAQEQVTFTTPVSSDPCV 93
           +  + S+P P  A     +KPTSR  R++SYG+SR+S LKK+F QEQV FT P+S DP V
Sbjct: 17  VSGSLSKPNPKKASSMQGQKPTSRKPRKASYGASRKSILKKSFNQEQVMFTAPLSDDPAV 76

Query: 94  GIIGGGMARLALSLVL 109
            IIGGGMA L+ +L L
Sbjct: 77  AIIGGGMAGLSCALYL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087896|emb|CBI35179.3| unnamed protein product [Vitis vinifera]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 53/76 (69%), Gaps = 3/76 (3%)

Query: 37  IKATSSQPKPNNA---NAKKPTSRNRRRSSYGSSRRSALKKTFAQEQVTFTTPVSSDPCV 93
           +  + S+P P  A     +KPTSR  R++SYG+SR+S LKK+F QEQV FT P+S DP V
Sbjct: 17  VSGSLSKPNPKKASSMQGQKPTSRKPRKASYGASRKSILKKSFNQEQVMFTAPLSDDPAV 76

Query: 94  GIIGGGMARLALSLVL 109
            IIGGGMA L+ +L L
Sbjct: 77  AIIGGGMAGLSCALYL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396966|ref|NP_566235.1| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana] gi|6175169|gb|AAF04895.1|AC011437_10 unknown protein [Arabidopsis thaliana] gi|15215628|gb|AAK91359.1| AT3g04650/F7O18_13 [Arabidopsis thaliana] gi|28416461|gb|AAO42761.1| At3g04650/F7O18_13 [Arabidopsis thaliana] gi|332640593|gb|AEE74114.1| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana]

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 64/97 (65%), Gaps = 2/97 (2%)

Query: 14  LILQPLKPPKSSRLSKAKTLTSTIKATSSQPKPNNANAKKPTSRNRRRSS-YGSSRRSAL 72
           L L+ L  P+++ LS  + + +T  + ++  K +N +++ P  + RR SS YG+SRRS L
Sbjct: 16  LKLKTLAQPRNTDLSTTRKIITTCDSQNNTGK-SNPSSRNPNFQKRRNSSKYGTSRRSIL 74

Query: 73  KKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109
           KK+F QEQVTFT  VS DP V IIGGGMA L  +L L
Sbjct: 75  KKSFLQEQVTFTARVSDDPHVAIIGGGMAGLVCALNL 111

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828968|ref|XP_002882366.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297328206|gb|EFH58625.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/97 (46%), Positives = 63/97 (64%), Gaps = 2/97 (2%)

Query: 14  LILQPLKPPKSSRLSKAKTLTSTIKATSSQPKPNNANAKKPTSRNRRRSS-YGSSRRSAL 72
           L L+ L  P+++ LS  + + +T  +  +  K +N +++ P  + RR SS YG+SRRS L
Sbjct: 16  LKLKTLSKPRNTDLSTTRKIITTCDSQKNTGK-SNPSSRNPNFQKRRNSSKYGTSRRSIL 74

Query: 73  KKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109
           KK+F QEQVTFT  +S DP V IIGGGMA L  +L L
Sbjct: 75  KKSFLQEQVTFTARISDDPHVAIIGGGMAGLVCALNL 111

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226530158|ref|NP_001140386.1| uncharacterized protein LOC100272440 [Zea mays] gi|223973745|gb|ACN31060.1| unknown [Zea mays]

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 37/50 (74%)

Query: 57  RNRRRSSYGSSRRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALS 106
           R  RR   G SRRSA+KK+F QEQV F+TPVS+DP V +IGGG + L+ +
Sbjct: 38  RRGRRGKPGFSRRSAIKKSFHQEQVVFSTPVSTDPTVAVIGGGASGLSCA 87

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414868816|tpg|DAA47373.1| TPA: hypothetical protein ZEAMMB73_111446, partial [Zea mays]

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 37/50 (74%)

Query: 57  RNRRRSSYGSSRRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALS 106
           R  RR   G SRRSA+KK+F QEQV F+TPVS+DP V +IGGG + L+ +
Sbjct: 38  RRGRRGKPGFSRRSAIKKSFHQEQVVFSTPVSTDPTVAVIGGGASGLSCA 87

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
TAIR|locus:2084903	486	AT3G04650 [Arabidopsis thalian	0.844	0.189	0.373	3.3e-08

TAIR|locus:2084903 AT3G04650 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 37/99 (37%), Positives = 53/99 (53%)

Query:    17 QPLK-----PPKSSRLSKAKTLTSTIKATSSQPKPNNANAKKPTXXXXXXXXXXXXXXXA 71
             QPLK      P+++ LS  + + +T  + ++  K +N +++ P                +
Sbjct:    14 QPLKLKTLAQPRNTDLSTTRKIITTCDSQNNTGK-SNPSSRNPNFQKRRNSSKYGTSRRS 72

Query:    72 -LKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109
              LKK+F QEQVTFT  VS DP V IIGGGMA L  +L L
Sbjct:    73 ILKKSFLQEQVTFTARVSDDPHVAIIGGGMAGLVCALNL 111


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.308   0.123   0.335    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      109        78   0.00091  102 3  11 23  0.45    29
                                                     29  0.38    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  381 (41 KB)
  Total size of DFA:  66 KB (2061 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.66u 0.08s 10.74t   Elapsed:  00:00:01
  Total cpu time:  10.66u 0.08s 10.74t   Elapsed:  00:00:01
  Start:  Mon May 20 21:47:54 2013   End:  Mon May 20 21:47:55 2013

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.13
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.11
PRK12831	464	putative oxidoreductase; Provisional	98.02
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.01
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.96
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	97.89
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.84
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	97.83
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.81
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.81
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.81
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.76
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.75
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.74
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.72
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.67
PLN02852	491	ferredoxin-NADP+ reductase	97.67
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.64
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.62
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.6
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.56
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	97.5
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.39
PTZ00188	506	adrenodoxin reductase; Provisional	97.29
PLN02661	357	Putative thiazole synthesis	97.29
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.28
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.27
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.24
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	97.23
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	97.13
PLN02676	487	polyamine oxidase	97.1
PRK13977	576	myosin-cross-reactive antigen; Provisional	97.09
PLN02463	447	lycopene beta cyclase	97.07
PRK08294	634	phenol 2-monooxygenase; Provisional	97.05
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	97.01
PLN02487	569	zeta-carotene desaturase	96.98
PRK13984	604	putative oxidoreductase; Provisional	96.98
PLN02612	567	phytoene desaturase	96.9
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.77
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	96.75
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	96.73
PLN02985	514	squalene monooxygenase	96.72
PTZ00367	567	squalene epoxidase; Provisional	96.71
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	96.71
PRK13748	561	putative mercuric reductase; Provisional	96.67
PLN02697	529	lycopene epsilon cyclase	96.6
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	96.57
PLN02529	738	lysine-specific histone demethylase 1	96.51
PLN02328	808	lysine-specific histone demethylase 1 homolog	96.38
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	96.37
PTZ00058	561	glutathione reductase; Provisional	96.23
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	96.23
PRK07121	492	hypothetical protein; Validated	96.21
PLN02507	499	glutathione reductase	96.16
PLN02815	594	L-aspartate oxidase	96.14
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	96.11
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	96.07
PTZ00383	497	malate:quinone oxidoreductase; Provisional	95.78
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	95.61
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	95.59
PLN03000	881	amine oxidase	95.58
PLN02546	558	glutathione reductase	95.42
PLN02464	627	glycerol-3-phosphate dehydrogenase	95.19
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	95.15
PTZ00153	659	lipoamide dehydrogenase; Provisional	94.77
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	94.42
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	94.35
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	94.34
PLN02976	1713	amine oxidase	94.01
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	93.76
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	93.73
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	93.63
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	93.34
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	93.22
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	93.12
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	92.89
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	92.84
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	92.81
PRK12770	352	putative glutamate synthase subunit beta; Provisio	92.8
PLN02494	477	adenosylhomocysteinase	92.78
PRK12831	464	putative oxidoreductase; Provisional	92.65
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	92.64
PRK09564	444	coenzyme A disulfide reductase; Reviewed	92.62
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	92.46
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	92.42
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	92.29
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	91.92
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	91.88
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	91.75
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	91.65
KOG2960	328	consensus Protein involved in thiamine biosynthesi	91.6
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	91.57
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	91.56
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	91.49
PRK10262	321	thioredoxin reductase; Provisional	91.45
TIGR02053	463	MerA mercuric reductase. This model represents the	91.42
PRK13984	604	putative oxidoreductase; Provisional	91.41
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	91.37
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	91.08
PRK06370	463	mercuric reductase; Validated	91.06
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	90.93
PLN02852	491	ferredoxin-NADP+ reductase	90.91
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	90.83
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	90.76
PRK13512	438	coenzyme A disulfide reductase; Provisional	90.73
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	90.59
PRK13748	561	putative mercuric reductase; Provisional	90.27
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	90.19
PRK06116	450	glutathione reductase; Validated	90.0
PLN02785	587	Protein HOTHEAD	89.89
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	89.83
PRK07846	451	mycothione reductase; Reviewed	89.8
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	89.72
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	89.69
PRK14694	468	putative mercuric reductase; Provisional	89.67
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	89.67
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	89.65
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	89.43
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	89.11
PRK12814	652	putative NADPH-dependent glutamate synthase small	88.59
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	88.58
PRK14989	847	nitrite reductase subunit NirD; Provisional	88.53
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	88.48
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	88.37
PRK12779	944	putative bifunctional glutamate synthase subunit b	88.28
PRK14727	479	putative mercuric reductase; Provisional	88.17
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	88.16
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	88.12
PRK07845	466	flavoprotein disulfide reductase; Reviewed	87.69
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	87.66
PTZ00052	499	thioredoxin reductase; Provisional	87.48
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	87.45
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	87.42
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	87.28
PLN02546	558	glutathione reductase	87.1
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	87.0
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	86.86
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	86.84
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	86.81
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	86.71
PTZ00058	561	glutathione reductase; Provisional	86.62
PLN02507	499	glutathione reductase	86.54
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	86.08
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	85.45
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	85.23
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	85.11
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	85.03
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	84.92
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	84.82
PLN02602	350	lactate dehydrogenase	84.64
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	84.52
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	84.29
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	83.3
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	82.99
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	82.5
COG4716	587	Myosin-crossreactive antigen [Function unknown]	82.37
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	82.34
PRK05562	223	precorrin-2 dehydrogenase; Provisional	82.32
PRK06567	1028	putative bifunctional glutamate synthase subunit b	82.16
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	81.71
PRK12548	289	shikimate 5-dehydrogenase; Provisional	81.61
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	81.58
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	81.4
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	81.27
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	81.25
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	81.01
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	80.71
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	80.3
KOG2853	509	consensus Possible oxidoreductase [General functio	80.21

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.13  E-value=1.7e-06  Score=74.11  Aligned_cols=41  Identities=34%  Similarity=0.357  Sum_probs=30.7

Q ss_pred             hhhhhhhhhc-cccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           69 RSALKKTFAQ-EQVTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        69 ~sitdk~F~q-~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      |-+.|+.++. +.........++++|||||||||||+||+.|
T Consensus       305 r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~L  346 (654)
T PRK12769        305 RYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVL  346 (654)
T ss_pred             HHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHHH
Confidence            4577877765 4433333346889999999999999999875

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.11  E-value=1.7e-06  Score=73.46  Aligned_cols=46  Identities=24%  Similarity=0.112  Sum_probs=38.5

Q ss_pred             CCccchhhhhhhhhc-cccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           64 YGSSRRSALKKTFAQ-EQVTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        64 ~~~sr~sitdk~F~q-~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      |+-=-+.+.|+.|+. |.........++++|||||||||||+||..|
T Consensus        96 i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~L  142 (457)
T COG0493          96 IGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADDL  142 (457)
T ss_pred             hhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHHH
Confidence            555567899999987 6666656688889999999999999999876

>PRK12831 putative oxidoreductase; Provisional

Probab=98.02  E-value=4.3e-06  Score=69.28  Aligned_cols=42  Identities=21%  Similarity=0.066  Sum_probs=30.3

Q ss_pred             chhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           68 RRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        68 r~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .|-+.|+.++...........++++|+|||||||||+||++|
T Consensus       118 ~r~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpAGl~aA~~l  159 (464)
T PRK12831        118 ERFVADWARENGIDLSETEEKKGKKVAVIGSGPAGLTCAGDL  159 (464)
T ss_pred             HHHHHHHHHHcCCCCCCCcCCCCCEEEEECcCHHHHHHHHHH
Confidence            345667666552222234467899999999999999999865

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.01  E-value=4.2e-06  Score=71.88  Aligned_cols=41  Identities=24%  Similarity=0.264  Sum_probs=31.1

Q ss_pred             hhhhhhhhhc-cccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           69 RSALKKTFAQ-EQVTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        69 ~sitdk~F~q-~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      |-+.|+.++. |........+++++|+|||||||||+||++|
T Consensus       288 r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L  329 (639)
T PRK12809        288 RYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADIL  329 (639)
T ss_pred             HHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHH
Confidence            4567777765 5543334456799999999999999999875

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.96  E-value=4e-06  Score=80.92  Aligned_cols=41  Identities=27%  Similarity=0.284  Sum_probs=37.3

Q ss_pred             hhhhhhhhhc-cccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           69 RSALKKTFAQ-EQVTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        69 ~sitdk~F~q-~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      +-|+|+.|.+ |-++-+....++++|||||+|||||+||..|
T Consensus      1763 ~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadql 1804 (2142)
T KOG0399|consen 1763 CAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQL 1804 (2142)
T ss_pred             hHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHH
Confidence            4689999998 9988888899999999999999999999765

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=97.89  E-value=5.6e-06  Score=64.21  Aligned_cols=35  Identities=23%  Similarity=0.306  Sum_probs=26.9

Q ss_pred             hhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           69 RSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        69 ~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      |-|++.+|++..-.      ...+|+|||||||||+||++|
T Consensus        10 ~~~~~~~~~~~~~~------~~~DVvIVGgGpAGl~AA~~l   44 (257)
T PRK04176         10 RAIVEEYFEKLLDY------LEVDVAIVGAGPSGLTAAYYL   44 (257)
T ss_pred             HHHHHHHHHHHHHh------ccCCEEEECccHHHHHHHHHH
Confidence            45788888884321      235799999999999999875

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.84  E-value=1.2e-05  Score=73.48  Aligned_cols=40  Identities=25%  Similarity=0.076  Sum_probs=29.5

Q ss_pred             chhhhhhhhhc-cccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           68 RRSALKKTFAQ-EQVTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        68 r~sitdk~F~q-~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .|-+.|+.++. +.  .+...+++++|||||||||||+||++|
T Consensus       409 er~~~d~~~~~~~~--~~~~~~~~~kVaIIG~GPAGLsaA~~L  449 (1006)
T PRK12775        409 ERFVGDNARAKPVK--PPRFSKKLGKVAICGSGPAGLAAAADL  449 (1006)
T ss_pred             HHHHHHHHHHcCCC--CCCCCCCCCEEEEECCCHHHHHHHHHH
Confidence            35667776654 33  233345789999999999999999875

>TIGR00292 thiazole biosynthesis enzyme

Probab=97.83  E-value=7.9e-06  Score=63.57  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=27.4

Q ss_pred             hhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           69 RSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        69 ~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      |-|++.+|++..-.      .+.+|+|||||||||+||++|
T Consensus         6 ~~~~~~~~~~~~~~------~~~DVvIVGgGpAGL~aA~~l   40 (254)
T TIGR00292         6 RAIVERYFEDLLDY------AESDVIIVGAGPSGLTAAYYL   40 (254)
T ss_pred             HHHHHHHHHHHHHh------cCCCEEEECCCHHHHHHHHHH
Confidence            45788889884421      355799999999999999865

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.81  E-value=1.6e-05  Score=65.40  Aligned_cols=42  Identities=24%  Similarity=0.246  Sum_probs=29.9

Q ss_pred             chhhhhhhhhccc-cccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           68 RRSALKKTFAQEQ-VTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        68 r~sitdk~F~q~q-v~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .|.+.|+.+.... .+.....+.+++|+|||||+|||+||..|
T Consensus       120 ~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l  162 (471)
T PRK12810        120 ERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQL  162 (471)
T ss_pred             HHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHH
Confidence            4566677665522 23333456788999999999999999865

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.81  E-value=9.4e-06  Score=73.92  Aligned_cols=23  Identities=22%  Similarity=0.485  Sum_probs=21.0

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||||||||+||++|
T Consensus       303 ~~~gkkVaVIGsGPAGLsaA~~L  325 (944)
T PRK12779        303 AAVKPPIAVVGSGPSGLINAYLL  325 (944)
T ss_pred             cCCCCeEEEECCCHHHHHHHHHH
Confidence            46799999999999999999875

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.81  E-value=1.3e-05  Score=62.68  Aligned_cols=29  Identities=34%  Similarity=0.474  Sum_probs=22.9

Q ss_pred             cccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           81 VTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        81 v~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      +.++...+...+|+|||||||||+||+.|
T Consensus         9 ~~~~~~~~~~~dV~IvGaG~aGl~~A~~L   37 (415)
T PRK07364          9 PTLPSTRSLTYDVAIVGGGIVGLTLAAAL   37 (415)
T ss_pred             CCCCCCCccccCEEEECcCHHHHHHHHHH
Confidence            33444455678999999999999999875

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.76  E-value=2.2e-05  Score=66.02  Aligned_cols=41  Identities=24%  Similarity=0.266  Sum_probs=29.1

Q ss_pred             chhhhhhhhhc-cccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           68 RRSALKKTFAQ-EQVTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        68 r~sitdk~F~q-~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      +|.+.|+.+.. +.++ ......+++|+|||+||+||+||+.|
T Consensus       115 ~r~~~~~~~~~~~~~~-~~~~~~g~~V~VIGaGpaGL~aA~~l  156 (564)
T PRK12771        115 ERFLGDYAIANGWKFP-APAPDTGKRVAVIGGGPAGLSAAYHL  156 (564)
T ss_pred             HHHHHHHHHHcCCCCC-CCCCCCCCEEEEECCCHHHHHHHHHH
Confidence            45555665554 3322 22367899999999999999999864

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.75  E-value=2.3e-05  Score=64.92  Aligned_cols=40  Identities=25%  Similarity=0.275  Sum_probs=27.7

Q ss_pred             hhhhhhhhc-cccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           70 SALKKTFAQ-EQVTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        70 sitdk~F~q-~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      -+.|+.+.. ++.......+++++|+|||||||||+||..|
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~l  160 (467)
T TIGR01318       120 YITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADIL  160 (467)
T ss_pred             HHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHHH
Confidence            345655543 3333333345889999999999999999864

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.74  E-value=2.3e-05  Score=68.37  Aligned_cols=23  Identities=30%  Similarity=0.353  Sum_probs=20.8

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..++++|+|||||||||+||.+|
T Consensus       428 ~~~~~~V~IIGaGpAGl~aA~~l  450 (752)
T PRK12778        428 EKNGKKVAVIGSGPAGLSFAGDL  450 (752)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHH
Confidence            56789999999999999999875

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.72  E-value=2.3e-05  Score=72.75  Aligned_cols=41  Identities=27%  Similarity=0.281  Sum_probs=27.2

Q ss_pred             hhhhhhhhhccc--cccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           69 RSALKKTFAQEQ--VTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        69 ~sitdk~F~q~q--v~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      |-+.|+.|....  +..+.+..++++|||||||||||+||+.|
T Consensus       514 r~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~L  556 (1012)
T TIGR03315       514 KVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYFL  556 (1012)
T ss_pred             HHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHHH
Confidence            345555544322  11122345678999999999999999875

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.67  E-value=3.6e-05  Score=63.22  Aligned_cols=24  Identities=38%  Similarity=0.403  Sum_probs=21.1

Q ss_pred             CCCCCCcEEEEcccHHHHHhhhcC
Q 046761           86 PVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...++++|+|||||+|||+||..|
T Consensus       129 ~~~~~~~V~IIG~G~aGl~aA~~l  152 (449)
T TIGR01316       129 APSTHKKVAVIGAGPAGLACASEL  152 (449)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHH
Confidence            456789999999999999999865

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.67  E-value=2.4e-05  Score=66.96  Aligned_cols=26  Identities=23%  Similarity=0.253  Sum_probs=21.9

Q ss_pred             CCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           84 TTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        84 ~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      +...+.+++|||||||||||.||..|
T Consensus        20 ~~~~~~~~~VaIVGaGPAGl~AA~~L   45 (491)
T PLN02852         20 SSSTSEPLHVCVVGSGPAGFYTADKL   45 (491)
T ss_pred             CCCCCCCCcEEEECccHHHHHHHHHH
Confidence            34556788999999999999999865

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.64  E-value=4.4e-05  Score=62.23  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=20.9

Q ss_pred             CCCCCCcEEEEcccHHHHHhhhcC
Q 046761           86 PVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ....+++|+|||||+|||+||+.|
T Consensus       136 ~~~~~~~VvIIGgGpaGl~aA~~l  159 (457)
T PRK11749        136 APKTGKKVAVIGAGPAGLTAAHRL  159 (457)
T ss_pred             CccCCCcEEEECCCHHHHHHHHHH
Confidence            456789999999999999999864

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.62  E-value=4.7e-05  Score=63.48  Aligned_cols=40  Identities=23%  Similarity=0.213  Sum_probs=27.2

Q ss_pred             hhhhhhhhc-cccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           70 SALKKTFAQ-EQVTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        70 sitdk~F~q-~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      -++|+.+.. +..........+++|+|||||+|||+||.+|
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L  162 (485)
T TIGR01317       122 IIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQL  162 (485)
T ss_pred             HHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHHHHHHH
Confidence            345555543 3222223345678999999999999999865

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.60  E-value=4.4e-05  Score=71.11  Aligned_cols=41  Identities=29%  Similarity=0.426  Sum_probs=27.8

Q ss_pred             hhhhhhhhhcccccc--CCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           69 RSALKKTFAQEQVTF--TTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        69 ~sitdk~F~q~qv~f--~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      |-+.|+.|......+  +...+++++|||||||||||+||+.|
T Consensus       516 r~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~L  558 (1019)
T PRK09853        516 KVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFL  558 (1019)
T ss_pred             HHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHHH
Confidence            345555554322121  22356899999999999999999875

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.56  E-value=3.7e-05  Score=71.96  Aligned_cols=24  Identities=25%  Similarity=0.250  Sum_probs=21.6

Q ss_pred             CCCCCCcEEEEcccHHHHHhhhcC
Q 046761           86 PVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++++|+|||||||||+||+.|
T Consensus       379 ~~~tgKKVaVVGaGPAGLsAA~~L  402 (1028)
T PRK06567        379 KEPTNYNILVTGLGPAGFSLSYYL  402 (1028)
T ss_pred             CCCCCCeEEEECcCHHHHHHHHHH
Confidence            356899999999999999999976

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=97.50  E-value=3.2e-05  Score=63.53  Aligned_cols=35  Identities=23%  Similarity=0.259  Sum_probs=26.8

Q ss_pred             hhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           69 RSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        69 ~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      |-|++.+|..+.-      -..-.|+||||||+||+||++|
T Consensus        15 raI~~~~~~~l~~------~~esDViIVGaGPsGLtAAyyL   49 (262)
T COG1635          15 RAITERYFEDLLD------YLESDVIIVGAGPSGLTAAYYL   49 (262)
T ss_pred             HHHHHHHHHHHHh------hhhccEEEECcCcchHHHHHHH
Confidence            4578888887331      1234699999999999999986

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.39  E-value=0.00014  Score=63.12  Aligned_cols=24  Identities=38%  Similarity=0.411  Sum_probs=20.8

Q ss_pred             CCCCCCcEEEEcccHHHHHhhhcC
Q 046761           86 PVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...++++|+|||||+|||++|+.|
T Consensus       189 ~~~~~k~VaIIGaGpAGl~aA~~L  212 (652)
T PRK12814        189 APKSGKKVAIIGAGPAGLTAAYYL  212 (652)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH
Confidence            345778999999999999999865

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.29  E-value=0.00015  Score=63.48  Aligned_cols=22  Identities=36%  Similarity=0.365  Sum_probs=19.3

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...++|||||||||||.||.+|
T Consensus        37 ~~~krVAIVGaGPAGlyaA~~L   58 (506)
T PTZ00188         37 AKPFKVGIIGAGPSALYCCKHL   58 (506)
T ss_pred             CCCCEEEEECCcHHHHHHHHHH
Confidence            4678999999999999999753

>PLN02661 Putative thiazole synthesis

Probab=97.29  E-value=0.00013  Score=61.26  Aligned_cols=35  Identities=26%  Similarity=0.326  Sum_probs=26.5

Q ss_pred             hhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           69 RSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        69 ~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      |-|++.+|++..-      ..+.+|+|||||+|||.||++|
T Consensus        77 ~~i~~~~~~~l~~------~~~~DVlIVGaG~AGl~AA~~L  111 (357)
T PLN02661         77 REMTRRYMTDMIT------YADTDVVIVGAGSAGLSCAYEL  111 (357)
T ss_pred             ccchHhHhhhhhh------cccCCEEEECCHHHHHHHHHHH
Confidence            4567777776331      2356899999999999999975

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.28  E-value=0.00013  Score=60.77  Aligned_cols=22  Identities=27%  Similarity=0.292  Sum_probs=19.4

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+.+|+|||||||||+||.+|
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~l  230 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYA  230 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHH
Confidence            4567999999999999999875

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.27  E-value=0.00013  Score=60.94  Aligned_cols=22  Identities=27%  Similarity=0.259  Sum_probs=19.5

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+.+|+|||||||||+||.+|
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~l  231 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYA  231 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHH
Confidence            4568999999999999999875

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.24  E-value=0.0002  Score=59.58  Aligned_cols=22  Identities=32%  Similarity=0.442  Sum_probs=19.1

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      +...+|+||||||+||++|+.|
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L   42 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDL   42 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHH
Confidence            4556899999999999999865

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=97.23  E-value=0.00023  Score=56.04  Aligned_cols=32  Identities=25%  Similarity=0.225  Sum_probs=24.7

Q ss_pred             ccccccCC-CCCCCCcEEEEcccHHHHHhhhcC
Q 046761           78 QEQVTFTT-PVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        78 q~qv~f~~-~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .|...|-. ..+...+|+|||||.+|+++|++|
T Consensus        17 ~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L   49 (407)
T TIGR01373        17 GWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYL   49 (407)
T ss_pred             CCCcccCCCCCCccCCEEEECCcHHHHHHHHHH
Confidence            35555544 345677999999999999999986

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=97.13  E-value=0.00028  Score=58.81  Aligned_cols=21  Identities=33%  Similarity=0.414  Sum_probs=17.9

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+|+||||||||++||+.|
T Consensus        38 ~~~DViIVGaGPAG~~aA~~L   58 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETL   58 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHH
Confidence            345799999999999999764

>PLN02676 polyamine oxidase

Probab=97.10  E-value=0.00026  Score=59.44  Aligned_cols=22  Identities=32%  Similarity=0.584  Sum_probs=19.4

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      +..++|+|||||++||+||++|
T Consensus        24 ~~~~~v~IIGaG~sGL~aa~~L   45 (487)
T PLN02676         24 KPSPSVIIVGAGMSGISAAKTL   45 (487)
T ss_pred             cCCCCEEEECCCHHHHHHHHHH
Confidence            4567899999999999999875

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=97.09  E-value=0.00034  Score=61.90  Aligned_cols=23  Identities=35%  Similarity=0.434  Sum_probs=20.1

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      -+.+++|+|||||+|||++|+.|
T Consensus        19 ~~~~~~a~IIGaGiAGLAAA~~L   41 (576)
T PRK13977         19 GVDNKKAYIIGSGLASLAAAVFL   41 (576)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHH
Confidence            45578999999999999999875

>PLN02463 lycopene beta cyclase

Probab=97.07  E-value=0.00036  Score=58.56  Aligned_cols=21  Identities=29%  Similarity=0.373  Sum_probs=18.2

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+|+|||||||||++|++|
T Consensus        27 ~~~DVvIVGaGpAGLalA~~L   47 (447)
T PLN02463         27 RVVDLVVVGGGPAGLAVAQQV   47 (447)
T ss_pred             cCceEEEECCCHHHHHHHHHH
Confidence            345899999999999999865

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.05  E-value=0.00043  Score=60.09  Aligned_cols=23  Identities=35%  Similarity=0.403  Sum_probs=19.8

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+...+|+||||||+||++|+.|
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~L   51 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQL   51 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHH
Confidence            34567899999999999999876

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=97.01  E-value=0.00032  Score=61.76  Aligned_cols=22  Identities=36%  Similarity=0.490  Sum_probs=18.6

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..++||||||||+|||+||-.|
T Consensus        19 ~~~~kIvIIGAG~AGLaAA~rL   40 (498)
T KOG0685|consen   19 RGNAKIVIIGAGIAGLAAATRL   40 (498)
T ss_pred             cCCceEEEECCchHHHHHHHHH
Confidence            3455999999999999999764

>PLN02487 zeta-carotene desaturase

Probab=96.98  E-value=0.00062  Score=59.25  Aligned_cols=19  Identities=37%  Similarity=0.567  Sum_probs=17.5

Q ss_pred             CcEEEEcccHHHHHhhhcC
Q 046761           91 PCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        91 kkVAVIGgGpAGLacA~eL  109 (109)
                      ++|+|||||++||+||++|
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L   94 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVEL   94 (569)
T ss_pred             CeEEEECCCHHHHHHHHHH
Confidence            4999999999999999875

>PRK13984 putative oxidoreductase; Provisional

Probab=96.98  E-value=0.00063  Score=57.54  Aligned_cols=24  Identities=33%  Similarity=0.520  Sum_probs=21.0

Q ss_pred             CCCCCCcEEEEcccHHHHHhhhcC
Q 046761           86 PVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...++++|+|||+|+|||++|..|
T Consensus       279 ~~~~~~~v~IIGaG~aGl~aA~~L  302 (604)
T PRK13984        279 PEKKNKKVAIVGSGPAGLSAAYFL  302 (604)
T ss_pred             cccCCCeEEEECCCHHHHHHHHHH
Confidence            356789999999999999999865

>PLN02612 phytoene desaturase

Probab=96.90  E-value=0.00054  Score=58.53  Aligned_cols=23  Identities=30%  Similarity=0.299  Sum_probs=19.9

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+++|+|||||++||+||++|
T Consensus        90 ~~~~~~v~iiG~G~~Gl~~a~~l  112 (567)
T PLN02612         90 PAKPLKVVIAGAGLAGLSTAKYL  112 (567)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHH
Confidence            44567999999999999999875

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.77  E-value=0.00087  Score=52.71  Aligned_cols=23  Identities=39%  Similarity=0.381  Sum_probs=19.7

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+++|+|||+|+|||++|..|
T Consensus        15 ~~~~~~VvIIG~G~aGl~aA~~l   37 (352)
T PRK12770         15 PPTGKKVAIIGAGPAGLAAAGYL   37 (352)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHH
Confidence            44678999999999999999764

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=96.75  E-value=0.00064  Score=55.55  Aligned_cols=19  Identities=32%  Similarity=0.597  Sum_probs=17.5

Q ss_pred             CcEEEEcccHHHHHhhhcC
Q 046761           91 PCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        91 kkVAVIGgGpAGLacA~eL  109 (109)
                      -+|+|||||.+||+||++|
T Consensus        25 ~DVvIIGgGi~Gls~A~~L   43 (460)
T TIGR03329        25 ADVCIVGGGFTGLWTAIMI   43 (460)
T ss_pred             eCEEEECCCHHHHHHHHHH
Confidence            4799999999999999976

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=96.73  E-value=0.0008  Score=60.14  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.2

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .....+|+|||||++||++|+.|
T Consensus        78 ~~~~~~VlIVGgGIaGLalAlaL  100 (668)
T PLN02927         78 KKKKSRVLVAGGGIGGLVFALAA  100 (668)
T ss_pred             ccCCCCEEEECCCHHHHHHHHHH
Confidence            35668999999999999999876

>PLN02985 squalene monooxygenase

Probab=96.72  E-value=0.00099  Score=56.53  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=20.4

Q ss_pred             CCCCCCcEEEEcccHHHHHhhhcC
Q 046761           86 PVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ....+.+|+|||||++|+++|+.|
T Consensus        39 ~~~~~~DViIVGAG~aGlalA~aL   62 (514)
T PLN02985         39 RKDGATDVIIVGAGVGGSALAYAL   62 (514)
T ss_pred             CcCCCceEEEECCCHHHHHHHHHH
Confidence            455667899999999999999865

>PTZ00367 squalene epoxidase; Provisional

Probab=96.71  E-value=0.0011  Score=57.47  Aligned_cols=22  Identities=36%  Similarity=0.392  Sum_probs=19.1

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+.+|+|||||++|+++|+.|
T Consensus        31 ~~~~dViIVGaGiaGlalA~aL   52 (567)
T PTZ00367         31 NYDYDVIIVGGSIAGPVLAKAL   52 (567)
T ss_pred             ccCccEEEECCCHHHHHHHHHH
Confidence            3567899999999999999865

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=96.71  E-value=0.0009  Score=57.49  Aligned_cols=20  Identities=50%  Similarity=0.705  Sum_probs=18.2

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+|||||++|+++|++|
T Consensus       260 ~~dVvIIGaGIaG~s~A~~L  279 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALAL  279 (662)
T ss_pred             CCCEEEECccHHHHHHHHHH
Confidence            45899999999999999976

>PRK13748 putative mercuric reductase; Provisional

Probab=96.67  E-value=0.00091  Score=55.44  Aligned_cols=21  Identities=33%  Similarity=0.392  Sum_probs=18.5

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+|+||||||||++||..|
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~  117 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKA  117 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHH
Confidence            357999999999999999864

>PLN02697 lycopene epsilon cyclase

Probab=96.60  E-value=0.0014  Score=56.71  Aligned_cols=20  Identities=35%  Similarity=0.278  Sum_probs=17.7

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+|||||||||++|..|
T Consensus       108 ~~DVvIVGaGPAGLalA~~L  127 (529)
T PLN02697        108 TLDLVVIGCGPAGLALAAES  127 (529)
T ss_pred             cccEEEECcCHHHHHHHHHH
Confidence            46899999999999999864

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=96.57  E-value=0.0011  Score=60.37  Aligned_cols=21  Identities=33%  Similarity=0.355  Sum_probs=18.4

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..++|+|||||||||++|++|
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~a  182 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAA  182 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHH
Confidence            357899999999999999874

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN02529 lysine-specific histone demethylase 1

Probab=96.51  E-value=0.0015  Score=59.00  Aligned_cols=22  Identities=36%  Similarity=0.510  Sum_probs=19.2

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...++|+|||||+|||+||..|
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l  179 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQL  179 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHH
Confidence            3567999999999999999865

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=96.38  E-value=0.0019  Score=59.06  Aligned_cols=21  Identities=29%  Similarity=0.422  Sum_probs=18.7

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..++|+|||||++||+||+.|
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L  257 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQL  257 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHH
Confidence            367899999999999999865

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.37  E-value=0.0025  Score=55.64  Aligned_cols=20  Identities=25%  Similarity=0.293  Sum_probs=17.5

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +.+|+|||||.|||+||+++
T Consensus        35 ~~DVlVVG~G~AGl~AAi~A   54 (640)
T PRK07573         35 KFDVIVVGTGLAGASAAATL   54 (640)
T ss_pred             ccCEEEECccHHHHHHHHHH
Confidence            45799999999999999864

>PTZ00058 glutathione reductase; Provisional

Probab=96.23  E-value=0.0032  Score=54.56  Aligned_cols=21  Identities=24%  Similarity=0.183  Sum_probs=18.0

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+.+|+|||||+||++||.++
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~a   67 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRA   67 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHH
Confidence            445799999999999999864

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=96.23  E-value=0.0023  Score=55.47  Aligned_cols=20  Identities=30%  Similarity=0.273  Sum_probs=17.7

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +-+|+|||||.|||+||+++
T Consensus        29 ~~DVlVIG~G~AGl~AAi~A   48 (617)
T PTZ00139         29 TYDAVVVGAGGAGLRAALGL   48 (617)
T ss_pred             ccCEEEECccHHHHHHHHHH
Confidence            55799999999999999863

>PRK07121 hypothetical protein; Validated

Probab=96.21  E-value=0.0024  Score=52.70  Aligned_cols=20  Identities=20%  Similarity=0.230  Sum_probs=17.6

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +.+|+|||+|.|||+||+++
T Consensus        20 ~~DVvVVGaG~AGl~AA~~a   39 (492)
T PRK07121         20 EADVVVVGFGAAGACAAIEA   39 (492)
T ss_pred             ccCEEEECcCHHHHHHHHHH
Confidence            45799999999999999864

>PLN02507 glutathione reductase

Probab=96.16  E-value=0.0029  Score=53.08  Aligned_cols=22  Identities=18%  Similarity=0.123  Sum_probs=18.7

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+.+|+||||||+|++||..|
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a   44 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFS   44 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHH
Confidence            4456899999999999999764

>PLN02815 L-aspartate oxidase

Probab=96.14  E-value=0.0036  Score=54.50  Aligned_cols=19  Identities=32%  Similarity=0.382  Sum_probs=16.9

Q ss_pred             CcEEEEcccHHHHHhhhcC
Q 046761           91 PCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        91 kkVAVIGgGpAGLacA~eL  109 (109)
                      -+|+|||+|.|||+||+++
T Consensus        30 ~DVlVVG~G~AGl~AAl~A   48 (594)
T PLN02815         30 FDFLVIGSGIAGLRYALEV   48 (594)
T ss_pred             cCEEEECccHHHHHHHHHH
Confidence            3699999999999999864

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=96.11  E-value=0.0036  Score=52.45  Aligned_cols=21  Identities=19%  Similarity=0.267  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..-+|+|||+|.|||+||+++
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~A   80 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEA   80 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHH
Confidence            456899999999999999863

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=96.07  E-value=0.0036  Score=54.75  Aligned_cols=20  Identities=25%  Similarity=0.253  Sum_probs=17.4

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      .-.|+|||+|.|||.||+++
T Consensus        50 ~~DVlVIG~G~AGl~AAl~A   69 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGL   69 (635)
T ss_pred             ecCEEEECccHHHHHHHHHH
Confidence            34799999999999999864

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=95.78  E-value=0.006  Score=52.25  Aligned_cols=21  Identities=38%  Similarity=0.411  Sum_probs=18.7

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+|+|||||..|+++|++|
T Consensus        44 ~~~DVvIIGGGI~G~a~A~~L   64 (497)
T PTZ00383         44 DVYDVVIVGGGVTGTALFYTL   64 (497)
T ss_pred             CcccEEEECccHHHHHHHHHH
Confidence            346899999999999999986

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=95.61  E-value=0.0052  Score=55.14  Aligned_cols=24  Identities=33%  Similarity=0.376  Sum_probs=20.3

Q ss_pred             CCCCCCcEEEEcccHHHHHhhhcC
Q 046761           86 PVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      +....-.|+|||||||||++|+.|
T Consensus        72 R~~e~~Dv~IVG~GPAGLsaAIrl   95 (621)
T KOG2415|consen   72 RESEEVDVVIVGAGPAGLSAAIRL   95 (621)
T ss_pred             hhhccccEEEECCCchhHHHHHHH
Confidence            345667899999999999999875

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=95.59  E-value=0.0058  Score=55.14  Aligned_cols=23  Identities=39%  Similarity=0.593  Sum_probs=20.7

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..-.++|.|||||+|||++|++|
T Consensus       121 ~~v~~svLVIGGGvAGitAAl~L  143 (622)
T COG1148         121 VEVSKSVLVIGGGVAGITAALEL  143 (622)
T ss_pred             HhhccceEEEcCcHHHHHHHHHH
Confidence            55678999999999999999986

>PLN03000 amine oxidase

Probab=95.58  E-value=0.0068  Score=56.27  Aligned_cols=21  Identities=38%  Similarity=0.534  Sum_probs=18.7

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..++|+|||||++||+||..|
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L  203 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQL  203 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHH
Confidence            458999999999999999865

>PLN02546 glutathione reductase

Probab=95.42  E-value=0.0078  Score=52.04  Aligned_cols=22  Identities=23%  Similarity=0.098  Sum_probs=18.6

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+.+|+|||||++|+.||..|
T Consensus        77 ~~~yDvvVIG~GpaG~~aA~~a   98 (558)
T PLN02546         77 HYDFDLFTIGAGSGGVRASRFA   98 (558)
T ss_pred             cCCCCEEEECCCHHHHHHHHHH
Confidence            3457899999999999999754

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=95.19  E-value=0.011  Score=51.59  Aligned_cols=20  Identities=25%  Similarity=0.331  Sum_probs=18.1

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+|||||..|.+||++|
T Consensus        71 ~~DVvVIGGGi~Ga~~A~~l   90 (627)
T PLN02464         71 PLDVLVVGGGATGAGVALDA   90 (627)
T ss_pred             ccCEEEECCCHHHHHHHHHH
Confidence            36899999999999999975

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=95.15  E-value=0.011  Score=41.47  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=17.2

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      -.+++|+|||+|.++.-+|.+|
T Consensus       165 ~~~k~V~VVG~G~SA~d~a~~l  186 (203)
T PF13738_consen  165 FKGKRVVVVGGGNSAVDIAYAL  186 (203)
T ss_dssp             CTTSEEEEE--SHHHHHHHHHH
T ss_pred             cCCCcEEEEcChHHHHHHHHHH
Confidence            4679999999999999988764

...

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=94.77  E-value=0.028  Score=50.05  Aligned_cols=20  Identities=35%  Similarity=0.443  Sum_probs=17.6

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +.+|+|||+|++|++||.++
T Consensus       116 ~yDviVIG~G~gG~~aA~~a  135 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINA  135 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHH
Confidence            46899999999999999763

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=94.42  E-value=0.022  Score=45.02  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.3

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||||+.|+.+|.+|
T Consensus       139 ~~~~~vvViGgG~~g~e~A~~L  160 (377)
T PRK04965        139 RDAQRVLVVGGGLIGTELAMDL  160 (377)
T ss_pred             hcCCeEEEECCCHHHHHHHHHH
Confidence            4678999999999999999764

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=94.35  E-value=0.022  Score=53.09  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=18.0

Q ss_pred             CCCCcEEEEcccHHHHHhhhc
Q 046761           88 SSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~e  108 (109)
                      ..+-+|+|||+|.|||+||++
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~  427 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIE  427 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHH
Confidence            345689999999999999976

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.34  E-value=0.022  Score=50.35  Aligned_cols=25  Identities=28%  Similarity=0.497  Sum_probs=22.9

Q ss_pred             CCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           85 TPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        85 ~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .++-.+|+|||||||-+|+.+|++|
T Consensus       349 GPLF~gK~VAVIGGGNSGvEAAIDL  373 (520)
T COG3634         349 GPLFKGKRVAVIGGGNSGVEAAIDL  373 (520)
T ss_pred             CcccCCceEEEECCCcchHHHHHhH
Confidence            4788999999999999999999876

>PLN02976 amine oxidase

Probab=94.01  E-value=0.034  Score=55.06  Aligned_cols=26  Identities=19%  Similarity=0.183  Sum_probs=21.3

Q ss_pred             CCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           84 TTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        84 ~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ......+++|+|||||++||+||+.|
T Consensus       687 ~~~~~~~~dV~IIGAG~AGLaAA~~L  712 (1713)
T PLN02976        687 LCDSVDRKKIIVVGAGPAGLTAARHL  712 (1713)
T ss_pred             cCCcCCCCcEEEECchHHHHHHHHHH
Confidence            34455678999999999999999865

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=93.76  E-value=0.035  Score=44.39  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.1

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||||..|+.+|.+|
T Consensus       142 ~~~~~vvViGgG~ig~E~A~~l  163 (396)
T PRK09754        142 QPERSVVIVGAGTIGLELAASA  163 (396)
T ss_pred             hcCCeEEEECCCHHHHHHHHHH
Confidence            4578999999999999998764

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=93.73  E-value=0.042  Score=40.35  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=19.2

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+++|+|||+|+.|+-+|.+|
T Consensus       138 ~~~~~~v~ViG~G~~~~e~a~~l  160 (300)
T TIGR01292       138 FFKNKEVAVVGGGDSAIEEALYL  160 (300)
T ss_pred             hcCCCEEEEECCChHHHHHHHHH
Confidence            34678999999999999988754

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=93.63  E-value=0.059  Score=45.87  Aligned_cols=39  Identities=18%  Similarity=0.194  Sum_probs=29.7

Q ss_pred             CCccchhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhc
Q 046761           64 YGSSRRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        64 ~~~sr~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      ||+ .+|+.|.....-..     .-.+++|+|||.|+.|+.+|..
T Consensus       182 ~g~-g~s~~~~i~r~t~~-----~l~GktVvViG~G~IG~~va~~  220 (413)
T cd00401         182 YGC-RESLIDGIKRATDV-----MIAGKVAVVAGYGDVGKGCAQS  220 (413)
T ss_pred             chh-chhhHHHHHHhcCC-----CCCCCEEEEECCCHHHHHHHHH
Confidence            665 77777766665332     4578999999999999999864

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=93.34  E-value=0.053  Score=42.21  Aligned_cols=21  Identities=29%  Similarity=0.642  Sum_probs=18.3

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||++|+.+|.+|
T Consensus       144 ~~~~vvVvG~G~~g~E~A~~l  164 (364)
T TIGR03169       144 GTKRLAVVGGGAAGVEIALAL  164 (364)
T ss_pred             CCceEEEECCCHHHHHHHHHH
Confidence            467999999999999998764

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=93.22  E-value=0.054  Score=43.43  Aligned_cols=21  Identities=33%  Similarity=0.458  Sum_probs=18.2

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||++|+.+|.+|
T Consensus       136 ~~~~vvViGgG~~g~e~A~~l  156 (427)
T TIGR03385       136 KVENVVIIGGGYIGIEMAEAL  156 (427)
T ss_pred             CCCeEEEECCCHHHHHHHHHH
Confidence            468999999999999998754

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=93.12  E-value=0.054  Score=44.46  Aligned_cols=20  Identities=30%  Similarity=0.532  Sum_probs=17.8

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||++|+.+|.+|
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l  199 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASML  199 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHH
Confidence            57999999999999998764

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=92.89  E-value=0.062  Score=45.13  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.3

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||||..|+.+|.+|
T Consensus       350 ~~~k~VvViGgG~~g~E~A~~L  371 (515)
T TIGR03140       350 FKGKDVAVIGGGNSGIEAAIDL  371 (515)
T ss_pred             cCCCEEEEECCcHHHHHHHHHH
Confidence            4578999999999999999764

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=92.84  E-value=0.064  Score=44.97  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.6

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||||..|+.+|.+|
T Consensus       349 ~~gk~VvVVGgG~~g~e~A~~L  370 (517)
T PRK15317        349 FKGKRVAVIGGGNSGVEAAIDL  370 (517)
T ss_pred             cCCCEEEEECCCHHHHHHHHHH
Confidence            4688999999999999999865

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=92.81  E-value=0.064  Score=43.39  Aligned_cols=21  Identities=33%  Similarity=0.496  Sum_probs=17.9

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||.+|+.+|..|
T Consensus       156 ~~~~vvIIGgG~~g~e~A~~l  176 (438)
T PRK07251        156 LPERLGIIGGGNIGLEFAGLY  176 (438)
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            457999999999999998653

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=92.80  E-value=0.067  Score=42.15  Aligned_cols=21  Identities=19%  Similarity=0.351  Sum_probs=18.5

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|+.|+.+|.+|
T Consensus       171 ~g~~vvViG~G~~g~e~A~~l  191 (352)
T PRK12770        171 EGKKVVVVGAGLTAVDAALEA  191 (352)
T ss_pred             CCCEEEEECCCHHHHHHHHHH
Confidence            578999999999999998653

>PLN02494 adenosylhomocysteinase

Probab=92.78  E-value=0.094  Score=46.01  Aligned_cols=40  Identities=20%  Similarity=0.184  Sum_probs=32.0

Q ss_pred             CCCccchhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhc
Q 046761           63 SYGSSRRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        63 ~~~~sr~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      .||+ |||++|-++..-.+     .-.+++|+|||.|..|..+|..
T Consensus       233 ~yGt-gqS~~d~i~r~t~i-----~LaGKtVvViGyG~IGr~vA~~  272 (477)
T PLN02494        233 LYGC-RHSLPDGLMRATDV-----MIAGKVAVICGYGDVGKGCAAA  272 (477)
T ss_pred             cccc-cccHHHHHHHhcCC-----ccCCCEEEEECCCHHHHHHHHH
Confidence            3776 88998888776443     3468999999999999999864

>PRK12831 putative oxidoreductase; Provisional

Probab=92.65  E-value=0.084  Score=44.08  Aligned_cols=23  Identities=22%  Similarity=0.492  Sum_probs=19.9

Q ss_pred             CCCCCCcEEEEcccHHHHHhhhc
Q 046761           86 PVSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      ....+++|+|||||..|+-||..
T Consensus       277 ~~~~gk~VvVIGgG~va~d~A~~  299 (464)
T PRK12831        277 PIKVGKKVAVVGGGNVAMDAART  299 (464)
T ss_pred             cccCCCeEEEECCcHHHHHHHHH
Confidence            34678999999999999999865

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=92.64  E-value=0.069  Score=40.51  Aligned_cols=20  Identities=20%  Similarity=0.190  Sum_probs=18.0

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      .++|+|||+|++||.+|..|
T Consensus       136 ~~~v~vvG~G~~gle~A~~~  155 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAA  155 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHH
Confidence            68999999999999999764

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=92.62  E-value=0.073  Score=42.65  Aligned_cols=21  Identities=24%  Similarity=0.211  Sum_probs=18.2

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||++|+.+|.+|
T Consensus       148 ~~~~vvVvGgG~~g~e~A~~l  168 (444)
T PRK09564        148 EIKNIVIIGAGFIGLEAVEAA  168 (444)
T ss_pred             CCCEEEEECCCHHHHHHHHHH
Confidence            468999999999999998764

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=92.46  E-value=0.068  Score=47.19  Aligned_cols=21  Identities=38%  Similarity=0.457  Sum_probs=17.5

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..++|.|||+||||+-.|..|
T Consensus        19 ~~p~vcIVGsGPAGfYtA~~L   39 (468)
T KOG1800|consen   19 STPRVCIVGSGPAGFYTAQHL   39 (468)
T ss_pred             CCceEEEECCCchHHHHHHHH
Confidence            445899999999999888654

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=92.42  E-value=0.077  Score=42.86  Aligned_cols=21  Identities=24%  Similarity=0.523  Sum_probs=17.9

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||.+|+.+|..|
T Consensus       169 ~~~~vvViGgG~~g~e~A~~l  189 (461)
T TIGR01350       169 VPESLVIIGGGVIGIEFASIF  189 (461)
T ss_pred             CCCeEEEECCCHHHHHHHHHH
Confidence            357999999999999998653

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=92.29  E-value=0.09  Score=43.41  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=19.6

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+++|+|||||..|+-||..|
T Consensus       269 ~~~gk~VvVIGgG~~a~d~A~~l  291 (449)
T TIGR01316       269 VYAGKSVVVIGGGNTAVDSARTA  291 (449)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHH
Confidence            45689999999999999998653

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=91.92  E-value=0.098  Score=43.36  Aligned_cols=21  Identities=24%  Similarity=0.281  Sum_probs=18.3

Q ss_pred             CCCCCcEEEEcccHHHHHhhh
Q 046761           87 VSSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~  107 (109)
                      ...+++|+|||||..|+-||.
T Consensus       278 ~~~gk~VvVIGgG~~g~e~A~  298 (471)
T PRK12810        278 SAKGKHVVVIGGGDTGMDCVG  298 (471)
T ss_pred             cCCCCEEEEECCcHHHHHHHH
Confidence            346899999999999999985

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=91.88  E-value=0.096  Score=42.93  Aligned_cols=19  Identities=21%  Similarity=0.466  Sum_probs=17.0

Q ss_pred             CCcEEEEcccHHHHHhhhc
Q 046761           90 DPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~e  108 (109)
                      +++|+|||||.+|+.+|..
T Consensus       170 ~~~vvIIGgG~iG~E~A~~  188 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASI  188 (458)
T ss_pred             CCcEEEECCCHHHHHHHHH
Confidence            5799999999999999865

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=91.75  E-value=0.12  Score=42.45  Aligned_cols=23  Identities=22%  Similarity=0.325  Sum_probs=19.6

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+++|+|||||..|+-+|.+|
T Consensus       270 ~~~g~~VvViGgG~~g~e~A~~l  292 (457)
T PRK11749        270 LPVGKRVVVIGGGNTAMDAARTA  292 (457)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHH
Confidence            34789999999999999998653

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=91.65  E-value=0.098  Score=46.38  Aligned_cols=20  Identities=45%  Similarity=0.539  Sum_probs=16.8

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...|+||||||+|++.|.+|
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l   55 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAAL   55 (481)
T ss_pred             cCCEEEECCchHHHHHHHHh
Confidence            56899999999998877654

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=91.60  E-value=0.064  Score=45.12  Aligned_cols=33  Identities=24%  Similarity=0.469  Sum_probs=23.7

Q ss_pred             hhhhhhhhc-cccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           70 SALKKTFAQ-EQVTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        70 sitdk~F~q-~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+..+|.+ +..       ..-.|+|||+|-|||++||+.
T Consensus        62 aMTrRYf~Dldky-------AesDvviVGAGSaGLsAAY~I   95 (328)
T KOG2960|consen   62 AMTRRYFKDLDKY-------AESDVVIVGAGSAGLSAAYVI   95 (328)
T ss_pred             HHHHHHHHHHHhh-------hccceEEECCCccccceeeee
Confidence            345667766 332       223599999999999999873

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=91.57  E-value=0.11  Score=42.33  Aligned_cols=20  Identities=20%  Similarity=0.305  Sum_probs=17.4

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      .++|+|||||++|+..|.+|
T Consensus       173 ~~~vvVvGgG~~GvE~A~~l  192 (424)
T PTZ00318        173 LLHFVVVGGGPTGVEFAAEL  192 (424)
T ss_pred             cCEEEEECCCHHHHHHHHHH
Confidence            35899999999999998764

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=91.56  E-value=0.12  Score=45.50  Aligned_cols=22  Identities=18%  Similarity=0.367  Sum_probs=19.5

Q ss_pred             CCCCCcEEEEcccHHHHHhhhc
Q 046761           87 VSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      ...+++|||||||..|+-||..
T Consensus       567 ~~~gk~VvVIGgG~~a~d~A~~  588 (752)
T PRK12778        567 IKFGKKVAVVGGGNTAMDSART  588 (752)
T ss_pred             ccCCCcEEEECCcHHHHHHHHH
Confidence            4578999999999999999865

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=91.49  E-value=0.092  Score=44.28  Aligned_cols=21  Identities=19%  Similarity=0.183  Sum_probs=19.0

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+|+|+|||+|.+|+-.|.+|
T Consensus       203 ~gk~VvVVG~G~Sg~diA~~L  223 (461)
T PLN02172        203 KNEVVVVIGNFASGADISRDI  223 (461)
T ss_pred             CCCEEEEECCCcCHHHHHHHH
Confidence            789999999999999988765

>PRK10262 thioredoxin reductase; Provisional

Probab=91.45  E-value=0.12  Score=39.69  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=18.9

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||+|..|+..|.+|
T Consensus       144 ~~g~~vvVvGgG~~g~e~A~~l  165 (321)
T PRK10262        144 YRNQKVAVIGGGNTAVEEALYL  165 (321)
T ss_pred             cCCCEEEEECCCHHHHHHHHHH
Confidence            4578999999999999988754

>TIGR02053 MerA mercuric reductase

Probab=91.42  E-value=0.12  Score=42.22  Aligned_cols=20  Identities=25%  Similarity=0.551  Sum_probs=17.6

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||.+|+.+|..|
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l  185 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAF  185 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHH
Confidence            47999999999999998754

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK13984 putative oxidoreductase; Provisional

Probab=91.41  E-value=0.12  Score=43.89  Aligned_cols=21  Identities=19%  Similarity=0.404  Sum_probs=18.3

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+-||..|
T Consensus       417 ~~k~VvVIGGG~~g~e~A~~l  437 (604)
T PRK13984        417 IPRSLVVIGGGNVAMDIARSM  437 (604)
T ss_pred             CCCcEEEECCchHHHHHHHHH
Confidence            468999999999999998753

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=91.37  E-value=0.12  Score=41.90  Aligned_cols=21  Identities=33%  Similarity=0.582  Sum_probs=18.0

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       168 ~~k~v~VIGgG~~g~E~A~~l  188 (460)
T PRK06292        168 LPKSLAVIGGGVIGLELGQAL  188 (460)
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            458999999999999998653

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=91.08  E-value=0.13  Score=41.63  Aligned_cols=21  Identities=14%  Similarity=0.210  Sum_probs=18.0

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       174 ~~~~v~IiGgG~~g~E~A~~l  194 (461)
T PRK05249        174 LPRSLIIYGAGVIGCEYASIF  194 (461)
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            468999999999999988653

>PRK06370 mercuric reductase; Validated

Probab=91.06  E-value=0.13  Score=41.98  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=18.0

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       170 ~~~~vvVIGgG~~g~E~A~~l  190 (463)
T PRK06370        170 LPEHLVIIGGGYIGLEFAQMF  190 (463)
T ss_pred             cCCEEEEECCCHHHHHHHHHH
Confidence            358999999999999998653

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=90.93  E-value=0.1  Score=42.43  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=15.9

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+++|+|||||.++-.++..|
T Consensus       187 ~~~~~~V~VVGgGQSAAEi~~~L  209 (341)
T PF13434_consen  187 SLAGKRVAVVGGGQSAAEIFLDL  209 (341)
T ss_dssp             ----EEEEEE-SSHHHHHHHHHH
T ss_pred             ccCCCeEEEECCcHhHHHHHHHH
Confidence            67889999999999998887754

>PLN02852 ferredoxin-NADP+ reductase

Probab=90.91  E-value=0.15  Score=44.07  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=19.8

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      +..+++|+|||+|..||-||..|
T Consensus       163 ~~~gk~VvVIGgGnvAlD~Ar~L  185 (491)
T PLN02852        163 LKSSDTAVVLGQGNVALDCARIL  185 (491)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHH
Confidence            45689999999999999999753

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=90.83  E-value=0.14  Score=41.55  Aligned_cols=20  Identities=20%  Similarity=0.419  Sum_probs=17.3

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||++|+.+|..|
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l  191 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAY  191 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHH
Confidence            47999999999999988653

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=90.76  E-value=0.14  Score=45.75  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=18.6

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||+.|+.+|.+|
T Consensus       139 ~~k~vvVVGgG~~GlE~A~~L  159 (785)
T TIGR02374       139 RFKKAAVIGGGLLGLEAAVGL  159 (785)
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            568999999999999999764

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=90.73  E-value=0.15  Score=41.73  Aligned_cols=20  Identities=20%  Similarity=0.180  Sum_probs=17.5

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||..|+.+|..|
T Consensus       148 ~~~vvViGgG~ig~E~A~~l  167 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENL  167 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHH
Confidence            57999999999999998754

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=90.59  E-value=0.15  Score=41.74  Aligned_cols=20  Identities=25%  Similarity=0.439  Sum_probs=17.4

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||..|+.+|..|
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l  191 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVL  191 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHH
Confidence            47999999999999998653

>PRK13748 putative mercuric reductase; Provisional

Probab=90.27  E-value=0.18  Score=41.97  Aligned_cols=21  Identities=19%  Similarity=0.355  Sum_probs=18.0

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+-+|..|
T Consensus       269 ~~~~vvViGgG~ig~E~A~~l  289 (561)
T PRK13748        269 IPERLAVIGSSVVALELAQAF  289 (561)
T ss_pred             CCCeEEEECCCHHHHHHHHHH
Confidence            357999999999999988753

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=90.19  E-value=0.18  Score=42.96  Aligned_cols=22  Identities=32%  Similarity=0.375  Sum_probs=18.9

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||||..|+.+|..|
T Consensus       141 ~~g~~VvVIGgG~~g~E~A~~L  162 (555)
T TIGR03143       141 FTGMDVFVIGGGFAAAEEAVFL  162 (555)
T ss_pred             cCCCEEEEECCCHHHHHHHHHH
Confidence            4689999999999999988653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06116 glutathione reductase; Validated

Probab=90.00  E-value=0.19  Score=40.87  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=18.0

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       166 ~~~~vvViGgG~~g~E~A~~l  186 (450)
T PRK06116        166 LPKRVAVVGAGYIAVEFAGVL  186 (450)
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            357999999999999998653

>PLN02785 Protein HOTHEAD

Probab=89.89  E-value=0.24  Score=43.28  Aligned_cols=22  Identities=32%  Similarity=0.365  Sum_probs=19.0

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ....+++|||||.||+.+|.+|
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~L   74 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATL   74 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHH
Confidence            3457899999999999999875

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=89.83  E-value=0.2  Score=41.45  Aligned_cols=20  Identities=30%  Similarity=0.459  Sum_probs=17.5

Q ss_pred             CCCcEEEEcccHHHHHhhhc
Q 046761           89 SDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~e  108 (109)
                      .+++|+|||||..|+.+|..
T Consensus       182 ~~~~vvVvGgG~~g~E~A~~  201 (475)
T PRK06327        182 VPKKLAVIGAGVIGLELGSV  201 (475)
T ss_pred             cCCeEEEECCCHHHHHHHHH
Confidence            35799999999999999865

>PRK07846 mycothione reductase; Reviewed

Probab=89.80  E-value=0.2  Score=41.47  Aligned_cols=20  Identities=25%  Similarity=0.499  Sum_probs=17.5

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||..|+.+|..|
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l  185 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVF  185 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHH
Confidence            57999999999999998753

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=89.72  E-value=0.2  Score=43.39  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=19.9

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .-++|+|+|||+|.+|.-+|.+|
T Consensus       180 ~f~gKrVlVVG~g~Sg~DIa~el  202 (531)
T PF00743_consen  180 PFKGKRVLVVGGGNSGADIAVEL  202 (531)
T ss_dssp             GGTTSEEEEESSSHHHHHHHHHH
T ss_pred             hcCCCEEEEEeCCHhHHHHHHHH
Confidence            45799999999999999888764

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=89.69  E-value=0.11  Score=46.19  Aligned_cols=42  Identities=17%  Similarity=0.209  Sum_probs=27.3

Q ss_pred             chhhhhhhhhccccccCC-CCCCCCcEEEEcccHHHHHhhhcC
Q 046761           68 RRSALKKTFAQEQVTFTT-PVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        68 r~sitdk~F~q~qv~f~~-~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      |+.+++.+-+.+-++++. ....--+.+||||||.|..-|.||
T Consensus       195 R~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL  237 (491)
T KOG2495|consen  195 RRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAEL  237 (491)
T ss_pred             HHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHH
Confidence            555555543334443433 233444899999999999999886

>PRK14694 putative mercuric reductase; Provisional

Probab=89.67  E-value=0.2  Score=41.16  Aligned_cols=20  Identities=20%  Similarity=0.323  Sum_probs=17.4

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||+|+.|+..|..|
T Consensus       178 ~~~vvViG~G~~G~E~A~~l  197 (468)
T PRK14694        178 PERLLVIGASVVALELAQAF  197 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHH
Confidence            57999999999999988653

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=89.67  E-value=0.2  Score=41.26  Aligned_cols=20  Identities=35%  Similarity=0.429  Sum_probs=17.5

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||..|+..|..|
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l  185 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVL  185 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHH
Confidence            47999999999999988753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=89.65  E-value=0.22  Score=41.12  Aligned_cols=20  Identities=30%  Similarity=0.421  Sum_probs=17.5

Q ss_pred             CCCcEEEEcccHHHHHhhhc
Q 046761           89 SDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~e  108 (109)
                      .+++|+|||||..|+..|..
T Consensus       173 ~~~~vvIIGgG~ig~E~A~~  192 (466)
T PRK06115        173 VPKHLVVIGAGVIGLELGSV  192 (466)
T ss_pred             CCCeEEEECCCHHHHHHHHH
Confidence            46899999999999998864

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=89.43  E-value=0.27  Score=41.28  Aligned_cols=21  Identities=24%  Similarity=0.183  Sum_probs=18.2

Q ss_pred             CCCCCcEEEEcccHHHHHhhh
Q 046761           87 VSSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~  107 (109)
                      ...+++|+|||||..|+-||.
T Consensus       280 ~~~gk~VvViGgG~~g~d~a~  300 (485)
T TIGR01317       280 KAKGKKVVVIGGGDTGADCVG  300 (485)
T ss_pred             cCCCCEEEEECCcHHHHHHHH
Confidence            357899999999999999864

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=89.11  E-value=0.24  Score=40.54  Aligned_cols=20  Identities=20%  Similarity=0.401  Sum_probs=17.4

Q ss_pred             CCCcEEEEcccHHHHHhhhc
Q 046761           89 SDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~e  108 (109)
                      .+++|+|||||..|+.+|..
T Consensus       165 ~~~~vvVIGgG~~g~E~A~~  184 (446)
T TIGR01424       165 LPKSILILGGGYIAVEFAGI  184 (446)
T ss_pred             cCCeEEEECCcHHHHHHHHH
Confidence            36799999999999998864

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=88.59  E-value=0.3  Score=42.71  Aligned_cols=22  Identities=23%  Similarity=0.360  Sum_probs=19.4

Q ss_pred             CCCCCcEEEEcccHHHHHhhhc
Q 046761           87 VSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      ...+++|+|||||..|+-+|..
T Consensus       320 ~~~gk~VvVIGgG~~a~e~A~~  341 (652)
T PRK12814        320 LHPGKKVVVIGGGNTAIDAART  341 (652)
T ss_pred             ccCCCeEEEECCCHHHHHHHHH
Confidence            4578999999999999999865

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=88.58  E-value=0.28  Score=37.81  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=19.0

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|+|+|-||.++|..|
T Consensus        23 l~~~rvlvlGAGgAg~aiA~~L   44 (226)
T cd05311          23 IEEVKIVINGAGAAGIAIARLL   44 (226)
T ss_pred             ccCCEEEEECchHHHHHHHHHH
Confidence            4678999999999999998754

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=88.53  E-value=0.26  Score=45.00  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=18.8

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||||+.||.+|..|
T Consensus       143 ~~~k~vvVIGgG~iGlE~A~~L  164 (847)
T PRK14989        143 RRSKRGAVVGGGLLGLEAAGAL  164 (847)
T ss_pred             hcCCeEEEECCCHHHHHHHHHH
Confidence            3467999999999999999764

>TIGR03452 mycothione_red mycothione reductase

Probab=88.48  E-value=0.28  Score=40.52  Aligned_cols=20  Identities=25%  Similarity=0.469  Sum_probs=17.3

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||..|+.+|..|
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l  188 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVF  188 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHH
Confidence            57999999999999988653

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=88.37  E-value=0.28  Score=40.66  Aligned_cols=20  Identities=25%  Similarity=0.489  Sum_probs=17.2

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||+.|+..|..|
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l  193 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVY  193 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHH
Confidence            47999999999999988653

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=88.28  E-value=0.28  Score=45.38  Aligned_cols=20  Identities=25%  Similarity=0.330  Sum_probs=18.3

Q ss_pred             CCCcEEEEcccHHHHHhhhc
Q 046761           89 SDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~e  108 (109)
                      .+++|+|||||..|+-||..
T Consensus       446 ~Gk~VvVIGGG~tA~D~A~t  465 (944)
T PRK12779        446 KGKEVFVIGGGNTAMDAART  465 (944)
T ss_pred             CCCEEEEECCCHHHHHHHHH
Confidence            68999999999999999864

>PRK14727 putative mercuric reductase; Provisional

Probab=88.17  E-value=0.3  Score=40.53  Aligned_cols=20  Identities=10%  Similarity=0.288  Sum_probs=17.2

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||..|+..|..|
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l  207 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAY  207 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHH
Confidence            47999999999999988653

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=88.16  E-value=0.3  Score=39.54  Aligned_cols=21  Identities=24%  Similarity=0.536  Sum_probs=17.7

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||+.|+.+|..|
T Consensus       157 ~~~~v~ViGgG~~g~E~A~~l  177 (441)
T PRK08010        157 LPGHLGILGGGYIGVEFASMF  177 (441)
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            356999999999999988753

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=88.12  E-value=0.31  Score=42.71  Aligned_cols=21  Identities=33%  Similarity=0.260  Sum_probs=17.7

Q ss_pred             CCCCCcEEEEcccHHHHHhhh
Q 046761           87 VSSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~  107 (109)
                      .-.+.+|+|||+|++||.++.
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~  182 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIG  182 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHH
Confidence            345889999999999999864

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=87.69  E-value=0.33  Score=40.10  Aligned_cols=20  Identities=10%  Similarity=0.263  Sum_probs=17.3

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||+|..|+.+|..|
T Consensus       177 ~~~vvVIGgG~ig~E~A~~l  196 (466)
T PRK07845        177 PEHLIVVGSGVTGAEFASAY  196 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHH
Confidence            47999999999999988653

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.66  E-value=0.27  Score=42.25  Aligned_cols=23  Identities=26%  Similarity=0.317  Sum_probs=19.7

Q ss_pred             CCCCCCcEEEEcccHHHHHhhhc
Q 046761           86 PVSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      ..=.+|+|+|||.|.+|+-+|.+
T Consensus       182 e~f~~k~VlVIG~g~SG~DIs~d  204 (448)
T KOG1399|consen  182 EKFRDKVVLVVGCGNSGMDISLD  204 (448)
T ss_pred             ccccCceEEEECCCccHHHHHHH
Confidence            35577999999999999988876

>PTZ00052 thioredoxin reductase; Provisional

Probab=87.48  E-value=0.34  Score=40.76  Aligned_cols=20  Identities=20%  Similarity=0.112  Sum_probs=17.3

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||..|+..|..|
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l  201 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFL  201 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHH
Confidence            46899999999999988754

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=87.45  E-value=0.35  Score=40.65  Aligned_cols=20  Identities=15%  Similarity=0.115  Sum_probs=17.2

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||..|+.+|..|
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l  199 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFL  199 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHH
Confidence            46899999999999988753

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=87.42  E-value=0.42  Score=35.77  Aligned_cols=21  Identities=14%  Similarity=0.216  Sum_probs=17.0

Q ss_pred             CCCCcEEEEccc-HHHHHhhhc
Q 046761           88 SSDPCVGIIGGG-MARLALSLV  108 (109)
Q Consensus        88 ~~~kkVAVIGgG-pAGLacA~e  108 (109)
                      -.+++|+|||+| ++|..+|..
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~   63 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAAL   63 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHH
Confidence            578999999999 479866654

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=87.28  E-value=0.3  Score=40.97  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=19.2

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .=.+|+|+|||+|-+|.-.|-+|
T Consensus       172 ~~~GKrV~VIG~GaSA~di~~~l  194 (443)
T COG2072         172 DLRGKRVLVIGAGASAVDIAPEL  194 (443)
T ss_pred             ccCCCeEEEECCCccHHHHHHHH
Confidence            45789999999999998777654

>PLN02546 glutathione reductase

Probab=87.10  E-value=0.38  Score=41.84  Aligned_cols=21  Identities=24%  Similarity=0.521  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       251 ~~k~V~VIGgG~iGvE~A~~L  271 (558)
T PLN02546        251 KPEKIAIVGGGYIALEFAGIF  271 (558)
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            467999999999999988653

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=87.00  E-value=0.38  Score=34.78  Aligned_cols=20  Identities=15%  Similarity=0.169  Sum_probs=15.9

Q ss_pred             CCCcEEEEcccHHHHHhhhc
Q 046761           89 SDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~e  108 (109)
                      .+.+|+|+|+|-+|+.+|..
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~   38 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEI   38 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHH
T ss_pred             CCeEEEEECCCHHHHHHHHH
Confidence            34799999999999998853

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=86.86  E-value=0.42  Score=37.94  Aligned_cols=22  Identities=32%  Similarity=0.237  Sum_probs=18.9

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||+|-+|.++|+.|
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL  146 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHAL  146 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHH
Confidence            3568999999999999998764

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=86.84  E-value=0.39  Score=40.63  Aligned_cols=19  Identities=21%  Similarity=0.335  Sum_probs=16.7

Q ss_pred             CCCcEEEEcccHHHHHhhh
Q 046761           89 SDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~  107 (109)
                      .+++|+|||||..|+.+|.
T Consensus       186 ~~~~vvIIGgG~iG~E~A~  204 (486)
T TIGR01423       186 PPRRVLTVGGGFISVEFAG  204 (486)
T ss_pred             CCCeEEEECCCHHHHHHHH
Confidence            3589999999999999885

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=86.81  E-value=0.43  Score=40.88  Aligned_cols=20  Identities=30%  Similarity=0.363  Sum_probs=17.5

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...|+|||||+.|...|.||
T Consensus       155 ~lti~IvGgG~TGVElAgeL  174 (405)
T COG1252         155 LLTIVIVGGGPTGVELAGEL  174 (405)
T ss_pred             eeEEEEECCChhHHHHHHHH
Confidence            35799999999999999875

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=86.71  E-value=0.42  Score=43.95  Aligned_cols=32  Identities=31%  Similarity=0.300  Sum_probs=26.0

Q ss_pred             cchhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhc
Q 046761           67 SRRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        67 sr~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      ||+++++..-..++          ..|.|||||-.|--||++
T Consensus        54 sRe~~l~~l~~~~~----------fDVLIIGGGAtGaGcALD   85 (680)
T KOG0042|consen   54 SREDLLEALKSTHE----------FDVLIIGGGATGAGCALD   85 (680)
T ss_pred             CHHHHHHHhhcCCc----------ccEEEECCCccCcceeeh
Confidence            99999888544332          579999999999999975

>PTZ00058 glutathione reductase; Provisional

Probab=86.62  E-value=0.44  Score=41.56  Aligned_cols=19  Identities=32%  Similarity=0.461  Sum_probs=17.2

Q ss_pred             CCcEEEEcccHHHHHhhhc
Q 046761           90 DPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~e  108 (109)
                      +++|+|||||..|+.+|..
T Consensus       237 pk~VvIIGgG~iGlE~A~~  255 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINV  255 (561)
T ss_pred             CCEEEEECCcHHHHHHHHH
Confidence            6899999999999998865

>PLN02507 glutathione reductase

Probab=86.54  E-value=0.41  Score=40.38  Aligned_cols=19  Identities=16%  Similarity=0.410  Sum_probs=16.9

Q ss_pred             CCcEEEEcccHHHHHhhhc
Q 046761           90 DPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~e  108 (109)
                      +++|+|||||..|+-+|..
T Consensus       203 ~k~vvVIGgG~ig~E~A~~  221 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASI  221 (499)
T ss_pred             CCeEEEECCcHHHHHHHHH
Confidence            5799999999999998864

>TIGR00936 ahcY adenosylhomocysteinase

Probab=86.08  E-value=0.69  Score=39.47  Aligned_cols=39  Identities=15%  Similarity=0.324  Sum_probs=27.8

Q ss_pred             CCccchhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhc
Q 046761           64 YGSSRRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        64 ~~~sr~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      ||+ ++|+.+.......+     .-.+++|+|||.|..|+.+|..
T Consensus       175 yg~-g~s~~~~i~r~t~~-----~l~Gk~VvViG~G~IG~~vA~~  213 (406)
T TIGR00936       175 YGT-GQSTIDGILRATNL-----LIAGKTVVVAGYGWCGKGIAMR  213 (406)
T ss_pred             ccc-chhHHHHHHHhcCC-----CCCcCEEEEECCCHHHHHHHHH
Confidence            653 46776655443222     3578999999999999999864

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=85.45  E-value=0.57  Score=35.82  Aligned_cols=37  Identities=16%  Similarity=0.196  Sum_probs=27.0

Q ss_pred             chhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           68 RRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        68 r~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      +||++|-+...-.+     .-.+|+|+|+|=|..|..||..|
T Consensus         6 g~S~~d~i~r~t~~-----~l~Gk~vvV~GYG~vG~g~A~~l   42 (162)
T PF00670_consen    6 GQSLVDGIMRATNL-----MLAGKRVVVIGYGKVGKGIARAL   42 (162)
T ss_dssp             HHHHHHHHHHHH-S-------TTSEEEEE--SHHHHHHHHHH
T ss_pred             chhHHHHHHhcCce-----eeCCCEEEEeCCCcccHHHHHHH
Confidence            68888888876444     44789999999999999999754

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=85.23  E-value=0.54  Score=40.81  Aligned_cols=20  Identities=20%  Similarity=0.321  Sum_probs=17.7

Q ss_pred             CCCCcEEEEcccHHHHHhhh
Q 046761           88 SSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~  107 (109)
                      ..+++|+|||||..|+-||.
T Consensus       466 ~~gk~VvVIGgG~~a~d~A~  485 (654)
T PRK12769        466 TAGLNVVVLGGGDTAMDCVR  485 (654)
T ss_pred             CCCCeEEEECCcHHHHHHHH
Confidence            46799999999999999875

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=85.11  E-value=0.48  Score=42.17  Aligned_cols=22  Identities=27%  Similarity=0.318  Sum_probs=18.4

Q ss_pred             CCCCCcEEEEcccHHHHHhhhc
Q 046761           87 VSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      ......|.||||||||-++|.+
T Consensus       208 ~k~~yDVLvVGgGPAgaaAAiY  229 (520)
T COG3634         208 AKDAYDVLVVGGGPAGAAAAIY  229 (520)
T ss_pred             ccCCceEEEEcCCcchhHHHHH
Confidence            3455689999999999999874

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=85.03  E-value=0.7  Score=30.03  Aligned_cols=22  Identities=18%  Similarity=0.302  Sum_probs=18.3

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|+|.|-+|..+|..|
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l   42 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLL   42 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH
Confidence            4678999999999998887643

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=84.92  E-value=0.56  Score=41.67  Aligned_cols=23  Identities=35%  Similarity=0.265  Sum_probs=19.7

Q ss_pred             CCCCCCcEEEEcccHHHHHhhhc
Q 046761           86 PVSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      ...-|...+|||||-+||+||-|
T Consensus        15 ~~sydyDLIviGgGSgGLacaKe   37 (503)
T KOG4716|consen   15 FSSYDYDLIVIGGGSGGLACAKE   37 (503)
T ss_pred             cccCCccEEEEcCCcchhhHHHH
Confidence            45667889999999999999965

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=84.82  E-value=0.6  Score=44.35  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=19.0

Q ss_pred             CCCCCcEEEEcccHHHHHhhhc
Q 046761           87 VSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      ...+++|||||||..|+-||..
T Consensus       665 ~~~GKrVVVIGGGnVAmD~Ar~  686 (1019)
T PRK09853        665 LKLGKHVVVVGGGNTAMDAARA  686 (1019)
T ss_pred             ccCCCEEEEECCChHHHHHHHH
Confidence            4568999999999999999853

>PLN02602 lactate dehydrogenase

Probab=84.64  E-value=0.74  Score=38.18  Aligned_cols=19  Identities=21%  Similarity=0.429  Sum_probs=17.2

Q ss_pred             CcEEEEcccHHHHHhhhcC
Q 046761           91 PCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        91 kkVAVIGgGpAGLacA~eL  109 (109)
                      +||+|||+|-.|-++|+.|
T Consensus        38 ~KI~IIGaG~VG~~~a~~l   56 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTI   56 (350)
T ss_pred             CEEEEECCCHHHHHHHHHH
Confidence            6999999999999999854

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=84.52  E-value=0.7  Score=43.02  Aligned_cols=23  Identities=30%  Similarity=0.424  Sum_probs=19.4

Q ss_pred             CCCCCCcEEEEcccHHHHHhhhc
Q 046761           86 PVSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      ....+++|+|||||..|+-||..
T Consensus       567 ~~~~Gk~VvVIGgG~tA~D~A~~  589 (1006)
T PRK12775        567 PISLGKSVVVIGAGNTAMDCLRV  589 (1006)
T ss_pred             CccCCCEEEEECCcHHHHHHHHH
Confidence            34578999999999999998753

>TIGR00518 alaDH alanine dehydrogenase

Probab=84.29  E-value=0.64  Score=38.29  Aligned_cols=20  Identities=30%  Similarity=0.390  Sum_probs=17.1

Q ss_pred             CCCcEEEEcccHHHHHhhhc
Q 046761           89 SDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~e  108 (109)
                      .+.+|+|||+|.+|+.+|..
T Consensus       166 ~~~~VlViGaG~vG~~aa~~  185 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKM  185 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHH
Confidence            45679999999999998864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=83.30  E-value=0.76  Score=36.78  Aligned_cols=21  Identities=24%  Similarity=0.200  Sum_probs=18.6

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|=|+.++|+.|
T Consensus       126 ~~k~vlilGaGGaarAi~~aL  146 (283)
T PRK14027        126 KLDSVVQVGAGGVGNAVAYAL  146 (283)
T ss_pred             CCCeEEEECCcHHHHHHHHHH
Confidence            478999999999999998864

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=82.99  E-value=0.78  Score=36.22  Aligned_cols=21  Identities=24%  Similarity=0.118  Sum_probs=18.5

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|=++.++|+.|
T Consensus       124 ~~k~vlvlGaGGaarai~~aL  144 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYAL  144 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHH
Confidence            578999999999999998764

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=82.50  E-value=0.82  Score=36.40  Aligned_cols=21  Identities=19%  Similarity=0.044  Sum_probs=17.8

Q ss_pred             CCCCcEEEEcccHHHHHhhhc
Q 046761           88 SSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~e  108 (109)
                      ..+.+|+|||+|..|..+|..
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~  196 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKH  196 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHH
Confidence            467899999999999987754

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=82.37  E-value=0.71  Score=41.59  Aligned_cols=22  Identities=36%  Similarity=0.608  Sum_probs=18.5

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      -..|.+-|||+|+||||+|..|
T Consensus        20 VdqKsaY~vG~GlAsLA~AvfL   41 (587)
T COG4716          20 VDQKSAYIVGGGLASLAAAVFL   41 (587)
T ss_pred             cccceeEEEccchHhhhheeEE
Confidence            3458899999999999999654

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=82.34  E-value=0.96  Score=32.84  Aligned_cols=21  Identities=19%  Similarity=0.376  Sum_probs=17.4

Q ss_pred             CCCcEEEEcc-cHHHHHhhhcC
Q 046761           89 SDPCVGIIGG-GMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGg-GpAGLacA~eL  109 (109)
                      .+++|+|+|| |..|..+|..|
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l   48 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLL   48 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHH
Confidence            5789999997 99998887643

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=82.32  E-value=1.1  Score=35.59  Aligned_cols=32  Identities=28%  Similarity=0.347  Sum_probs=22.5

Q ss_pred             hhhhhccccccCC-CCCCCCcEEEEcccHHHHH
Q 046761           73 KKTFAQEQVTFTT-PVSSDPCVGIIGGGMARLA  104 (109)
Q Consensus        73 dk~F~q~qv~f~~-~~~~~kkVAVIGgGpAGLa  104 (109)
                      +..|+.+..+|+- -...+++|+|||||..++-
T Consensus         7 ~~~~~~~~~~~pi~l~~~~~~VLVVGGG~VA~R   39 (223)
T PRK05562          7 EDIYNEENKYMFISLLSNKIKVLIIGGGKAAFI   39 (223)
T ss_pred             hHHhhccCCEeeeEEECCCCEEEEECCCHHHHH
Confidence            3446666655654 3456889999999998864

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=82.16  E-value=1.1  Score=42.91  Aligned_cols=20  Identities=25%  Similarity=0.458  Sum_probs=17.7

Q ss_pred             CCCCcEEEEcccHHHHHhhh
Q 046761           88 SSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~  107 (109)
                      ..+++|||||||..|+-||.
T Consensus       548 ~~Gk~VVVIGGGnTAmD~Ar  567 (1028)
T PRK06567        548 VIRMPIAVIGGGLTSLDAAT  567 (1028)
T ss_pred             cCCCCEEEEcCcHHHHHHHH
Confidence            34689999999999999986

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=81.71  E-value=1.2  Score=36.67  Aligned_cols=29  Identities=21%  Similarity=0.133  Sum_probs=21.6

Q ss_pred             ccccCCCCCCCCcEEEEc-ccHHHHHhhhc
Q 046761           80 QVTFTTPVSSDPCVGIIG-GGMARLALSLV  108 (109)
Q Consensus        80 qv~f~~~~~~~kkVAVIG-gGpAGLacA~e  108 (109)
                      +..|-...|..++|+||| .|.-|-..|..
T Consensus        88 ~~~~~~~~~~~~~I~IiGG~GlmG~slA~~  117 (374)
T PRK11199         88 DKGFKTLNPDLRPVVIVGGKGQLGRLFAKM  117 (374)
T ss_pred             HhcccccCcccceEEEEcCCChhhHHHHHH
Confidence            333545566778999999 79999887764

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=81.61  E-value=0.99  Score=35.66  Aligned_cols=22  Identities=23%  Similarity=0.282  Sum_probs=18.2

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|+|+|=+|.++|..|
T Consensus       124 ~~~k~vlI~GAGGagrAia~~L  145 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQC  145 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHH
Confidence            3578999999999999888653

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=81.58  E-value=1.4  Score=35.40  Aligned_cols=17  Identities=24%  Similarity=0.268  Sum_probs=14.4

Q ss_pred             CCcEEEEcccHHHHHhh
Q 046761           90 DPCVGIIGGGMARLALS  106 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA  106 (109)
                      +.+|+|+|+||.||.++
T Consensus       169 ~~~V~V~GaGpIGLla~  185 (350)
T COG1063         169 GGTVVVVGAGPIGLLAI  185 (350)
T ss_pred             CCEEEEECCCHHHHHHH
Confidence            33899999999999864

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=81.40  E-value=0.63  Score=40.96  Aligned_cols=21  Identities=29%  Similarity=0.398  Sum_probs=17.9

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+.+.||||||..|||.|.||
T Consensus        47 ~~~D~VvvGgGiVGlAsARel   67 (453)
T KOG2665|consen   47 ERYDLVVVGGGIVGLASAREL   67 (453)
T ss_pred             ccccEEEECCceeehhhhHHH
Confidence            345689999999999999876

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=81.27  E-value=0.96  Score=42.86  Aligned_cols=22  Identities=18%  Similarity=0.282  Sum_probs=18.8

Q ss_pred             CCCCCcEEEEcccHHHHHhhhc
Q 046761           87 VSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      ...+++|+|||||..|+-||..
T Consensus       663 ~~~GK~VVVIGGGnvAmD~Ar~  684 (1012)
T TIGR03315       663 NPLGKHVVVVGGGNTAMDAARA  684 (1012)
T ss_pred             cccCCeEEEECCCHHHHHHHHH
Confidence            3468999999999999998853

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=81.25  E-value=1  Score=34.83  Aligned_cols=22  Identities=41%  Similarity=0.430  Sum_probs=18.5

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||+|-+|.++|..|
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L  136 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPL  136 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHH
Confidence            4578999999999999988654

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=81.01  E-value=1.2  Score=30.45  Aligned_cols=21  Identities=29%  Similarity=0.251  Sum_probs=17.3

Q ss_pred             CCCCcEEEEcccHHHHHhhhc
Q 046761           88 SSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~e  108 (109)
                      .++++|+|||+|..|.+.|..
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~   37 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYA   37 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHH
Confidence            356899999999999887754

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=80.71  E-value=1.1  Score=34.95  Aligned_cols=22  Identities=32%  Similarity=0.292  Sum_probs=18.7

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||+|-+|.++|..|
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL  142 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPL  142 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHH
Confidence            4678999999999999988654

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=80.30  E-value=1.1  Score=37.18  Aligned_cols=21  Identities=24%  Similarity=0.124  Sum_probs=18.0

Q ss_pred             CCCCcEEEEcccHHHHHhhhc
Q 046761           88 SSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~e  108 (109)
                      ..+++|+|||+|..|..+|..
T Consensus       180 ~~~~~vlViGaG~iG~~~a~~  200 (423)
T PRK00045        180 LSGKKVLVIGAGEMGELVAKH  200 (423)
T ss_pred             ccCCEEEEECchHHHHHHHHH
Confidence            467899999999999988754

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=80.21  E-value=1.1  Score=39.99  Aligned_cols=21  Identities=33%  Similarity=0.301  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..-.|+|||||..|.+.|+-|
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWL  105 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWL  105 (509)
T ss_pred             cccCEEEECCCccchhhHHHH
Confidence            466899999999999999754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.17
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.12
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.79
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	97.79
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.54
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.49
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	97.47
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.46
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.45
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.44
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.39
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.39
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.39
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	97.38
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.3
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	97.3
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.29
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.28
2bry_A	497	NEDD9 interacting protein with calponin homology a	97.26
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	97.25
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.17
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	97.16
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	97.14
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.14
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.12
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.12
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.11
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.1
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.09
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.08
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.06
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	97.05
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.04
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.04
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.03
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	97.02
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	96.99
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	96.98
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	96.94
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	96.94
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	96.92
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	96.9
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	96.89
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.85
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	96.84
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	96.84
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	96.83
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	96.8
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	96.8
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.76
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	96.73
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	96.72
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	96.71
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.61
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	96.55
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	96.53
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	96.47
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.45
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	96.35
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	96.35
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	96.32
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	96.32
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.23
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	96.08
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	96.04
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	95.78
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	95.56
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	95.02
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	94.8
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	94.5
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	94.24
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	94.17
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	94.14
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	94.09
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	93.88
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	93.85
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	93.75
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	93.71
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	93.71
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	93.59
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	93.53
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	93.34
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	93.33
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	93.22
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	93.22
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	93.19
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	93.16
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	93.16
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	93.04
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	93.04
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	93.04
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	93.0
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	92.99
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	92.98
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	92.98
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	92.95
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	92.95
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	92.95
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	92.94
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	92.84
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	92.81
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	92.74
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	92.73
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	92.7
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	92.56
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	92.53
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	92.49
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	92.48
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	92.4
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	92.3
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	92.29
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	92.05
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	91.92
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	91.92
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	91.87
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	91.83
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	91.78
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	91.74
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	91.73
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	91.7
1ojt_A	482	Surface protein; redox-active center, glycolysis,	91.66
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	91.53
3r9u_A	315	Thioredoxin reductase; structural genomics, center	91.5
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	91.48
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	91.17
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	91.11
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	90.98
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	90.83
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	90.77
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	90.76
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	90.75
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	90.65
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	90.55
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	90.47
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	90.38
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	90.33
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	90.16
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	90.16
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	90.1
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	90.03
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	89.69
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	89.45
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	89.16
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	88.99
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	88.99
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	88.99
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	88.98
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	88.97
3c85_A	183	Putative glutathione-regulated potassium-efflux S	88.96
1fec_A	490	Trypanothione reductase; redox-active center, oxid	88.84
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	88.84
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	88.52
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	87.96
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	87.35
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	87.35
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	87.18
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	87.02
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	87.01
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	86.68
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	86.58
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	86.46
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	86.29
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	86.26
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	85.81
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	85.64
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	85.48
4dna_A	463	Probable glutathione reductase; structural genomic	85.15
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	85.14
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	84.84
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	84.43
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	84.31
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	84.27
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	84.25
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	83.65
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	83.42
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	83.4
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	83.33
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	83.26
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	83.08
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	83.0
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	82.94
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	82.64
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	82.38
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	82.29
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	82.19
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	82.08
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	81.42
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	81.4
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	81.39
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	81.3
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	80.7
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	80.47
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	80.05

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.17  E-value=2.8e-07  Score=68.67  Aligned_cols=34  Identities=21%  Similarity=0.258  Sum_probs=24.5

Q ss_pred             hhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           70 SALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        70 sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      -+++.+|.+..      ...+.+|+|||||||||+||++|
T Consensus        51 ~~~~~~~~~~~------~~~~~DV~IIGaGPAGlsAA~~l   84 (326)
T 3fpz_A           51 AMTSRYFKDLD------KFAVSDVIIVGAGSSGLSAAYVI   84 (326)
T ss_dssp             HHHHHHHHHHH------HTTEESEEEECCSHHHHHHHHHH
T ss_pred             HHHHHHHhhhh------hccCCCEEEECCCHHHHHHHHHH
Confidence            35566666521      12456899999999999999865

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.12  E-value=1.3e-06  Score=70.17  Aligned_cols=41  Identities=27%  Similarity=0.213  Sum_probs=29.1

Q ss_pred             hhhhhhhhhc-cccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           69 RSALKKTFAQ-EQVTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        69 ~sitdk~F~q-~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      +-+.|+.|.+ |.........++++|+|||||+|||+||+.|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~V~IIGgGpAGl~aA~~L  141 (456)
T 2vdc_G          100 KYINDTAWDQGWVKPRTPSRELGLSVGVIGAGPAGLAAAEEL  141 (456)
T ss_dssp             HHHHHHHHHHTCCCCCCSCSSCCCCEEEECCSHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCcCCCCCEEEEECCCHHHHHHHHHH
Confidence            3455666654 4433333346788999999999999999875

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.79  E-value=4.3e-06  Score=59.97  Aligned_cols=23  Identities=30%  Similarity=0.322  Sum_probs=19.0

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+..++|+|||||+|||+||++|
T Consensus        19 ~~~~~~vvIIG~G~aGl~aA~~l   41 (338)
T 3itj_A           19 SHVHNKVTIIGSGPAAHTAAIYL   41 (338)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHH
T ss_pred             CCCCCCEEEECcCHHHHHHHHHH
Confidence            44568999999999999999875

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=97.79  E-value=6.4e-06  Score=62.37  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=18.4

Q ss_pred             CCCCCCcEEEEcccHHHHHhhhcC
Q 046761           86 PVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+..+|+|||||++||++|+.|
T Consensus        19 ~~~~~~dV~IVGaG~aGl~~A~~L   42 (407)
T 3rp8_A           19 YFQGHMKAIVIGAGIGGLSAAVAL   42 (407)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHH
Confidence            345667999999999999999875

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.54  E-value=2.8e-05  Score=59.05  Aligned_cols=21  Identities=48%  Similarity=0.716  Sum_probs=18.7

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+|+|||||++||++|+.|
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L   45 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLL   45 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHH
Confidence            457999999999999999865

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.49  E-value=3.3e-05  Score=59.90  Aligned_cols=19  Identities=37%  Similarity=0.364  Sum_probs=17.6

Q ss_pred             CcEEEEcccHHHHHhhhcC
Q 046761           91 PCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        91 kkVAVIGgGpAGLacA~eL  109 (109)
                      .+|+|||||+|||+||++|
T Consensus        40 ~~v~iiGaG~aGl~aA~~l   58 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDL   58 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHH
Confidence            6899999999999999875

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=97.47  E-value=3e-05  Score=57.51  Aligned_cols=22  Identities=32%  Similarity=0.333  Sum_probs=19.1

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      +...+|+|||||++|++||++|
T Consensus        19 ~~~~dVvIIG~G~~Gl~~A~~L   40 (405)
T 2gag_B           19 KKSYDAIIVGGGGHGLATAYFL   40 (405)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHH
T ss_pred             CCcCCEEEECcCHHHHHHHHHH
Confidence            3456899999999999999875

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.46  E-value=4.4e-05  Score=61.15  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=20.2

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ....++|+|||||++||+||++|
T Consensus        41 ~~~~~~V~IIGAGiaGL~aA~~L   63 (376)
T 2e1m_A           41 PGPPKRILIVGAGIAGLVAGDLL   63 (376)
T ss_dssp             CCSCCEEEEECCBHHHHHHHHHH
T ss_pred             CCCCceEEEECCCHHHHHHHHHH
Confidence            35678999999999999999875

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.45  E-value=5.5e-05  Score=63.04  Aligned_cols=24  Identities=29%  Similarity=0.365  Sum_probs=20.7

Q ss_pred             CCCCCCcEEEEcccHHHHHhhhcC
Q 046761           86 PVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      +....++|+|||||+|||+||++|
T Consensus       387 ~~~~~~~VvIIGgG~AGl~aA~~L  410 (690)
T 3k30_A          387 AKESDARVLVVGAGPSGLEAARAL  410 (690)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHH
T ss_pred             cccccceEEEECCCHHHHHHHHHH
Confidence            345678999999999999999875

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.44  E-value=3.2e-05  Score=60.29  Aligned_cols=20  Identities=45%  Similarity=0.745  Sum_probs=17.5

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      .++|+|||||||||++|+.|
T Consensus        22 ~~~ViIVGaGpaGl~~A~~L   41 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFL   41 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHH
Confidence            46899999999999999875

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.39  E-value=5.9e-05  Score=58.55  Aligned_cols=22  Identities=45%  Similarity=0.599  Sum_probs=19.2

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...++|+|||||++||+||+.|
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l   52 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVL   52 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHH
Confidence            3467999999999999999865

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.39  E-value=5.8e-05  Score=66.38  Aligned_cols=22  Identities=18%  Similarity=0.386  Sum_probs=19.5

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .++++|+|||||+|||+||++|
T Consensus       185 ~~~~~VvVIGgGpAGl~aA~~L  206 (1025)
T 1gte_A          185 AYSAKIALLGAGPASISCASFL  206 (1025)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHH
T ss_pred             cCCCEEEEECccHHHHHHHHHH
Confidence            3578999999999999999875

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.39  E-value=5.4e-05  Score=60.99  Aligned_cols=23  Identities=13%  Similarity=0.150  Sum_probs=19.4

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ....++|+|||||+|||+||.+|
T Consensus        33 ~~~~~~VvIIGgG~AGl~aA~~L   55 (588)
T 3ics_A           33 RWGSRKIVVVGGVAGGASVAARL   55 (588)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHH
T ss_pred             cccCCCEEEECCcHHHHHHHHHH
Confidence            34568999999999999999865

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=97.38  E-value=4.7e-05  Score=60.52  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=17.6

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .....+|+|||||+|||+||+.|
T Consensus        24 ~~~~~dViIIGgG~AGl~aA~~L   46 (417)
T 3v76_A           24 VAEKQDVVIIGAGAAGMMCAIEA   46 (417)
T ss_dssp             ----CCEEEECCSHHHHHHHHHH
T ss_pred             cCCCCCEEEECcCHHHHHHHHHH
Confidence            34567999999999999999864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.30  E-value=0.00012  Score=61.86  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=20.5

Q ss_pred             CCCCCCcEEEEcccHHHHHhhhcC
Q 046761           86 PVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      +....++|+|||||+|||+||..|
T Consensus       385 ~~~~~~~VvIIGgGpAGl~aA~~L  408 (729)
T 1o94_A          385 QTKNKDSVLIVGAGPSGSEAARVL  408 (729)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHH
T ss_pred             cccCCceEEEECCCHHHHHHHHHH
Confidence            345678999999999999999864

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=97.30  E-value=9.2e-05  Score=61.97  Aligned_cols=21  Identities=33%  Similarity=0.214  Sum_probs=18.6

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||||||+||++|
T Consensus       106 ~~~DVVIVGgGpaGL~aA~~L  126 (549)
T 3nlc_A          106 LTERPIVIGFGPCGLFAGLVL  126 (549)
T ss_dssp             CCCCCEEECCSHHHHHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHH
Confidence            347899999999999999875

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.29  E-value=9.6e-05  Score=61.00  Aligned_cols=23  Identities=52%  Similarity=0.619  Sum_probs=19.7

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .....+|+|||||+|||+||++|
T Consensus       269 ~~~~~DVvIIGgGiaGlsaA~~L  291 (676)
T 3ps9_A          269 GSSKREAAIIGGGIASALLSLAL  291 (676)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHH
Confidence            34557999999999999999875

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.28  E-value=7e-05  Score=57.59  Aligned_cols=20  Identities=25%  Similarity=0.217  Sum_probs=17.6

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+|||||+|||+||.+|
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L   49 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIAL   49 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHH
Confidence            35899999999999999865

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=97.26  E-value=9.7e-05  Score=59.40  Aligned_cols=23  Identities=17%  Similarity=0.306  Sum_probs=20.0

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .....+|+|||||+|||++|+.|
T Consensus        89 ~~~~~dVvIVGgG~aGl~aA~~L  111 (497)
T 2bry_A           89 ACTNTKCLVVGAGPCGLRAAVEL  111 (497)
T ss_dssp             TTTTCEEEEECCSHHHHHHHHHH
T ss_pred             ccCCCCEEEECccHHHHHHHHHH
Confidence            45678999999999999999864

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=97.25  E-value=7.8e-05  Score=55.07  Aligned_cols=35  Identities=17%  Similarity=0.290  Sum_probs=24.4

Q ss_pred             hhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           69 RSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        69 ~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      |.+++.+|++...      ....+|+|||||++||+||++|
T Consensus        24 ~~~~~~~~~~~~~------~~~~dVvIIGgG~aGl~aA~~l   58 (284)
T 1rp0_A           24 REMTRRYMTDMIT------YAETDVVVVGAGSAGLSAAYEI   58 (284)
T ss_dssp             HHHHHHHHHHHHH------HTEEEEEEECCSHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhh------ccccCEEEECccHHHHHHHHHH
Confidence            3456666654211      1235799999999999999875

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.17  E-value=0.00011  Score=57.85  Aligned_cols=20  Identities=15%  Similarity=0.137  Sum_probs=17.5

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+|||||+|||+||.+|
T Consensus        25 ~~dVvVIGgG~aGl~aA~~l   44 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKA   44 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHH
Confidence            47899999999999999864

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=97.16  E-value=0.00012  Score=57.26  Aligned_cols=20  Identities=30%  Similarity=0.320  Sum_probs=17.7

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+|||||+|||+||+.|
T Consensus        26 ~~dVvIIGgG~aGl~aA~~l   45 (447)
T 2i0z_A           26 HYDVIVIGGGPSGLMAAIGA   45 (447)
T ss_dssp             CCSEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHH
Confidence            35799999999999999864

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=97.14  E-value=0.00012  Score=56.08  Aligned_cols=20  Identities=25%  Similarity=0.303  Sum_probs=18.0

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+|||||++|+++|++|
T Consensus        23 ~~dVvIIGgGiaGls~A~~L   42 (448)
T 3axb_A           23 RFDYVVVGAGVVGLAAAYYL   42 (448)
T ss_dssp             EEEEEEECCSHHHHHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHH
Confidence            45899999999999999875

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.14  E-value=0.00017  Score=60.12  Aligned_cols=23  Identities=35%  Similarity=0.358  Sum_probs=20.2

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+++|+|||||++||+||+.|
T Consensus       104 ~~~~~~v~viG~G~~gl~~a~~l  126 (662)
T 2z3y_A          104 TKKTGKVIIIGSGVSGLAAARQL  126 (662)
T ss_dssp             SSCCCEEEEECCBHHHHHHHHHH
T ss_pred             ccCCCeEEEECcCHHHHHHHHHH
Confidence            35678999999999999999865

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.12  E-value=0.00012  Score=57.80  Aligned_cols=20  Identities=20%  Similarity=0.212  Sum_probs=17.9

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+|||||+|||+||++|
T Consensus        26 ~~DVvVIGgG~aGl~aA~~l   45 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLA   45 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHH
Confidence            46899999999999999875

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.12  E-value=0.00018  Score=57.78  Aligned_cols=23  Identities=30%  Similarity=0.144  Sum_probs=19.8

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+...+|+|||||+||++||++|
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l   62 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYL   62 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHH
Confidence            45567899999999999999865

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.11  E-value=0.00012  Score=59.19  Aligned_cols=22  Identities=32%  Similarity=0.294  Sum_probs=19.1

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ....+|+|||||||||+||.+|
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l  126 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEA  126 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHH
T ss_pred             cccccEEEECCCccHHHHHHHH
Confidence            4567999999999999999864

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.10  E-value=0.00016  Score=58.39  Aligned_cols=21  Identities=29%  Similarity=0.295  Sum_probs=18.6

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+|+|||||+||+++|+.|
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~L   44 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYL   44 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHH
Confidence            456899999999999999875

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.09  E-value=0.00014  Score=55.78  Aligned_cols=20  Identities=25%  Similarity=0.262  Sum_probs=17.9

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+|||||++|+++|++|
T Consensus        36 ~~dVvIIGaGi~Gls~A~~L   55 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYL   55 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHH
T ss_pred             cCCEEEECCcHHHHHHHHHH
Confidence            35899999999999999875

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.08  E-value=0.00021  Score=59.40  Aligned_cols=21  Identities=33%  Similarity=0.509  Sum_probs=18.7

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+|+|||||+||+++|++|
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~L  283 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALAL  283 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHH
T ss_pred             CCCCEEEECCcHHHHHHHHHH
Confidence            357899999999999999875

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.06  E-value=0.00017  Score=56.55  Aligned_cols=21  Identities=29%  Similarity=0.237  Sum_probs=18.3

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+|+|||||+|||+||++|
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~l   39 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRA   39 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHH
Confidence            346899999999999999864

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=97.05  E-value=0.00019  Score=59.90  Aligned_cols=20  Identities=45%  Similarity=0.554  Sum_probs=18.3

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+|||||+||+++|+.|
T Consensus        23 ~~DVvIVGgG~AGl~aA~~L   42 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTL   42 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHH
Confidence            57999999999999999875

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.04  E-value=0.00031  Score=56.92  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=19.6

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .++.+||+|||||+||++||..|
T Consensus        39 ~~~KprVVIIGgG~AGl~~A~~L   61 (502)
T 4g6h_A           39 HSDKPNVLILGSGWGAISFLKHI   61 (502)
T ss_dssp             SCSSCEEEEECSSHHHHHHHHHS
T ss_pred             CCCCCCEEEECCcHHHHHHHHHh
Confidence            34567999999999999999875

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.04  E-value=0.00017  Score=58.20  Aligned_cols=22  Identities=27%  Similarity=0.185  Sum_probs=18.9

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ....+|+|||||+|||+||+.|
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~l  231 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYS  231 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHH
T ss_pred             cCcccEEEECCcHHHHHHHHHH
Confidence            4467899999999999999864

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.03  E-value=0.00022  Score=59.07  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=19.7

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ....++|+|||||+|||+||..|
T Consensus       370 ~~~~~~vvIIGgG~AGl~aA~~l  392 (671)
T 1ps9_A          370 AVQKKNLAVVGAGPAGLAFAINA  392 (671)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCHHHHHHHHHH
Confidence            34568999999999999999864

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=97.02  E-value=0.00018  Score=59.18  Aligned_cols=20  Identities=35%  Similarity=0.424  Sum_probs=17.9

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+|||||+|||++|+.|
T Consensus        35 ~~DVvIVGaG~aGlaaA~~L   54 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRL   54 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHH
Confidence            36899999999999999875

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=96.99  E-value=0.00018  Score=59.65  Aligned_cols=21  Identities=43%  Similarity=0.404  Sum_probs=18.3

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+|+||||||+||++|++|
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~L   51 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQL   51 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHH
T ss_pred             CCCcEEEECcCHHHHHHHHHH
Confidence            346899999999999999875

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=96.98  E-value=0.0002  Score=57.99  Aligned_cols=20  Identities=45%  Similarity=0.622  Sum_probs=17.8

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+||||||+||++|++|
T Consensus        26 ~~dVlIVGaGpaGl~~A~~L   45 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDL   45 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHH
Confidence            35899999999999999875

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=96.94  E-value=0.00014  Score=58.92  Aligned_cols=21  Identities=19%  Similarity=0.270  Sum_probs=18.4

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+|+|||||+|||+||++|
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~l  145 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISA  145 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHH
Confidence            356899999999999999864

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=96.94  E-value=0.00023  Score=58.75  Aligned_cols=20  Identities=35%  Similarity=0.431  Sum_probs=17.0

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+||||||+||++|++|
T Consensus        49 ~~DVvIVGaG~aGL~~A~~L   68 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGEL   68 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHH
Confidence            46899999999999999875

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=96.92  E-value=0.00033  Score=61.69  Aligned_cols=23  Identities=35%  Similarity=0.358  Sum_probs=20.2

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+++|+|||||++||+||+.|
T Consensus       275 ~~~~~~v~viG~G~aGl~~A~~l  297 (852)
T 2xag_A          275 TKKTGKVIIIGSGVSGLAAARQL  297 (852)
T ss_dssp             SSCCCEEEEECCSHHHHHHHHHH
T ss_pred             cCCCCeEEEECCCHHHHHHHHHH
Confidence            35678999999999999999875

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=96.90  E-value=0.0003  Score=55.76  Aligned_cols=20  Identities=15%  Similarity=0.165  Sum_probs=17.9

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      .++|+|||||+||++||..|
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l   54 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTM   54 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHH
Confidence            47899999999999999864

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=96.89  E-value=0.00028  Score=55.74  Aligned_cols=20  Identities=25%  Similarity=0.365  Sum_probs=17.3

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      .++|+|||||+||++||..|
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l   55 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQI   55 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHH
Confidence            35899999999999999864

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.85  E-value=0.0002  Score=57.19  Aligned_cols=20  Identities=45%  Similarity=0.536  Sum_probs=17.7

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+|||||+|||+||++|
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L  127 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALEL  127 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHH
T ss_pred             cCCEEEECccHHHHHHHHHH
Confidence            35899999999999999875

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=96.84  E-value=0.00033  Score=56.32  Aligned_cols=21  Identities=38%  Similarity=0.332  Sum_probs=18.3

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+.+|+|||||+|||+||..|
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~l   51 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEA   51 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHH
Confidence            456899999999999999864

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=96.84  E-value=0.00032  Score=56.44  Aligned_cols=22  Identities=32%  Similarity=0.244  Sum_probs=19.0

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ....+|+|||||++||+||++|
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l   48 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERL   48 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHH
T ss_pred             CCCCCEEEECccHHHHHHHHHH
Confidence            3457899999999999999875

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=96.83  E-value=0.00032  Score=56.30  Aligned_cols=20  Identities=30%  Similarity=0.512  Sum_probs=17.9

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+|||||+|||+||++|
T Consensus        79 ~~DVvIVGgG~AGL~aA~~L   98 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVL   98 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHH
T ss_pred             cCCEEEECccHHHHHHHHHH
Confidence            46899999999999999875

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=96.80  E-value=0.00035  Score=55.52  Aligned_cols=20  Identities=30%  Similarity=0.400  Sum_probs=17.7

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+|||||+|||+||++|
T Consensus        65 ~~dv~IiG~G~aGl~aA~~l   84 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVI   84 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHH
T ss_pred             cCCEEEECccHHHHHHHHHH
Confidence            45899999999999999875

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=96.80  E-value=0.00037  Score=60.97  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=18.6

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..++|+|||||++||+||++|
T Consensus        55 ~~~~v~IiGaGiaGL~aA~~L   75 (721)
T 3ayj_A           55 GNYRIAIVGGGAGGIAALYEL   75 (721)
T ss_dssp             SEEEEEEECCSHHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHH
Confidence            347899999999999999875

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=96.76  E-value=0.00025  Score=59.21  Aligned_cols=20  Identities=25%  Similarity=0.395  Sum_probs=17.7

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+|||||+|||+||++|
T Consensus        22 ~~DVvVIG~G~AGl~AAl~a   41 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEA   41 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHH
Confidence            45799999999999999864

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=96.73  E-value=0.00041  Score=56.20  Aligned_cols=20  Identities=30%  Similarity=0.371  Sum_probs=17.7

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+|||||+|||+||++|
T Consensus       121 ~~DVvVVG~G~aGl~aA~~l  140 (566)
T 1qo8_A          121 TTQVLVVGAGSAGFNASLAA  140 (566)
T ss_dssp             EEEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHH
Confidence            45899999999999999864

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=96.72  E-value=0.00043  Score=55.27  Aligned_cols=20  Identities=30%  Similarity=0.338  Sum_probs=17.7

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+|||||+|||+||++|
T Consensus        41 ~~DVvVVGaG~AGl~AA~~a   60 (510)
T 4at0_A           41 EADVVVAGYGIAGVAASIEA   60 (510)
T ss_dssp             EEEEEEECCSHHHHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHH
Confidence            35799999999999999875

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=96.71  E-value=0.00035  Score=57.36  Aligned_cols=21  Identities=24%  Similarity=0.263  Sum_probs=18.4

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+|+|||||+|||+||+.|
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L   40 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRF   40 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHH
T ss_pred             CCCCEEEECchHHHHHHHHHH
Confidence            456899999999999999865

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.61  E-value=0.00058  Score=54.97  Aligned_cols=19  Identities=32%  Similarity=0.354  Sum_probs=16.4

Q ss_pred             CcEEEEcccHHHHHhhhcC
Q 046761           91 PCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        91 kkVAVIGgGpAGLacA~eL  109 (109)
                      ..|+|||+||+||++|..|
T Consensus        40 ~Dvi~IGaGp~gLa~A~~L   58 (501)
T 4b63_A           40 HDLLCVGFGPASLAIAIAL   58 (501)
T ss_dssp             EEEEEECCSHHHHHHHHHH
T ss_pred             CcEEEEcccHHHHHHHHHH
Confidence            3699999999999998753

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=96.55  E-value=0.00068  Score=58.83  Aligned_cols=22  Identities=41%  Similarity=0.392  Sum_probs=19.3

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||||++||+||++|
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l  355 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQL  355 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCHHHHHHHHHH
Confidence            4467999999999999999875

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=96.53  E-value=0.00069  Score=55.53  Aligned_cols=20  Identities=25%  Similarity=0.416  Sum_probs=17.9

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+|||||++|++||++|
T Consensus        18 ~~DVvVIGgGi~Gl~~A~~L   37 (561)
T 3da1_A           18 QLDLLVIGGGITGAGIALDA   37 (561)
T ss_dssp             CEEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHH
Confidence            46899999999999999875

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=96.47  E-value=0.00077  Score=56.87  Aligned_cols=19  Identities=26%  Similarity=0.240  Sum_probs=17.1

Q ss_pred             CcEEEEcccHHHHHhhhcC
Q 046761           91 PCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        91 kkVAVIGgGpAGLacA~eL  109 (109)
                      .+|+|||||+|||+||++|
T Consensus        19 ~DVvVVG~G~AGl~AAl~a   37 (621)
T 2h88_A           19 FDAVVVGAGGAGLRAAFGL   37 (621)
T ss_dssp             EEEEEECCSHHHHHHHHHH
T ss_pred             CCEEEECccHHHHHHHHHH
Confidence            4799999999999999864

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=96.45  E-value=0.00081  Score=57.25  Aligned_cols=20  Identities=20%  Similarity=0.355  Sum_probs=17.7

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...|+|||||+|||+||++|
T Consensus        22 ~~DVvVVG~G~AGL~AAl~a   41 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEA   41 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHH
T ss_pred             EcCEEEECCCHHHHHHHHHH
Confidence            35799999999999999875

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=96.35  E-value=0.00094  Score=54.60  Aligned_cols=21  Identities=38%  Similarity=0.360  Sum_probs=18.3

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+|+|||+|+|||+||+.|
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~  145 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSA  145 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHH
Confidence            356899999999999999864

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=96.35  E-value=0.00098  Score=57.82  Aligned_cols=21  Identities=33%  Similarity=0.317  Sum_probs=18.2

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+|+|||||+||++||+.|
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaL   47 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAA   47 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHH
T ss_pred             CcCCEEEECChHHHHHHHHHH
Confidence            346899999999999999864

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=96.32  E-value=0.0012  Score=57.26  Aligned_cols=20  Identities=35%  Similarity=0.474  Sum_probs=17.8

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+|||||+||++||++|
T Consensus        27 ~yDVIVIGgG~AGl~AAlal   46 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAA   46 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHH
Confidence            46899999999999999864

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=96.32  E-value=0.0012  Score=54.31  Aligned_cols=20  Identities=25%  Similarity=0.431  Sum_probs=17.8

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+|||||++|+++|++|
T Consensus        32 ~~DVvVIGgGi~G~~~A~~L   51 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQA   51 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHH
Confidence            35799999999999999875

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.23  E-value=0.0011  Score=58.11  Aligned_cols=20  Identities=30%  Similarity=0.272  Sum_probs=17.7

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      .++|+|||||||||+||.+|
T Consensus       128 ~~dVvVIGaGpAGl~AA~~l  147 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREA  147 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHH
Confidence            46799999999999999864

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=96.08  E-value=0.0016  Score=56.30  Aligned_cols=22  Identities=27%  Similarity=0.242  Sum_probs=18.4

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ....+|+|||||+||++||+.|
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaL   40 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAV   40 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHH
T ss_pred             cCcCCEEEECccHHHHHHHHHH
Confidence            3457899999999999999864

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=96.04  E-value=0.0018  Score=54.20  Aligned_cols=20  Identities=25%  Similarity=0.183  Sum_probs=17.8

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+|||||+||++||++|
T Consensus        46 ~~dvvIIG~G~aGl~aA~~l   65 (623)
T 3pl8_A           46 KYDVVIVGSGPIGCTYAREL   65 (623)
T ss_dssp             CEEEEEECCSHHHHHHHHHH
T ss_pred             cCCEEEECCcHHHHHHHHHH
Confidence            45799999999999999875

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=95.78  E-value=0.0025  Score=52.98  Aligned_cols=19  Identities=32%  Similarity=0.321  Sum_probs=17.1

Q ss_pred             CCcEEEEcccHHHHHhhhc
Q 046761           90 DPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~e  108 (109)
                      +.+|+||||||||++||.+
T Consensus        42 dYDviVIG~GpaG~~aA~~   60 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKE   60 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHH
Confidence            4689999999999999975

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=95.56  E-value=0.0048  Score=44.64  Aligned_cols=21  Identities=24%  Similarity=0.362  Sum_probs=18.2

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+-+|..|
T Consensus       144 ~~k~vvViGgG~ig~E~A~~l  164 (312)
T 4gcm_A          144 KNKRLFVIGGGDSAVEEGTFL  164 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH
Confidence            368999999999999998754

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=95.02  E-value=0.0063  Score=50.38  Aligned_cols=23  Identities=30%  Similarity=0.278  Sum_probs=19.7

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .....+|+|||+|++|+++|++|
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l   39 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLL   39 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHH
T ss_pred             ccccCCEEEECCCHHHHHHHHHH
Confidence            44567899999999999999875

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=94.80  E-value=0.011  Score=42.18  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=19.0

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||||..|+-+|..|
T Consensus       150 ~~~~~vvViGgG~ig~e~A~~l  171 (314)
T 4a5l_A          150 FRNKVLMVVGGGDAAMEEALHL  171 (314)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHH
T ss_pred             cCCCeEEEECCChHHHHHHHHH
Confidence            4578999999999999998753

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=94.50  E-value=0.014  Score=41.62  Aligned_cols=21  Identities=29%  Similarity=0.385  Sum_probs=18.8

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|..|+-+|.+|
T Consensus       162 ~~~~v~VvG~G~~g~e~a~~l  182 (357)
T 4a9w_A          162 AGMRVAIIGGGNSGAQILAEV  182 (357)
T ss_dssp             TTSEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCcCHHHHHHHH
Confidence            578999999999999999764

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=94.24  E-value=0.018  Score=44.61  Aligned_cols=21  Identities=19%  Similarity=0.246  Sum_probs=18.5

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||++|+.+|..|
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l  168 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAF  168 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHH
Confidence            568999999999999999753

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=94.17  E-value=0.014  Score=44.77  Aligned_cols=21  Identities=29%  Similarity=0.379  Sum_probs=18.3

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+-+|.+|
T Consensus       226 ~~~~vvVvGgG~sg~e~a~~l  246 (463)
T 3s5w_A          226 KPMKIAIIGGGQSAAEAFIDL  246 (463)
T ss_dssp             -CEEEEEECCSHHHHHHHHHH
T ss_pred             CCCeEEEECCCHhHHHHHHHH
Confidence            688999999999999998764

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=94.14  E-value=0.012  Score=47.97  Aligned_cols=21  Identities=29%  Similarity=0.371  Sum_probs=18.5

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ....|+|||||.||+.+|.+|
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rL   45 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATL   45 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHH
T ss_pred             CcccEEEECccHHHHHHHHHH
Confidence            446899999999999999875

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=94.09  E-value=0.019  Score=44.47  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=18.8

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|..|+-+|.+|
T Consensus       211 ~~k~VvVvG~G~sg~e~A~~l  231 (447)
T 2gv8_A          211 VGESVLVVGGASSANDLVRHL  231 (447)
T ss_dssp             TTCCEEEECSSHHHHHHHHHH
T ss_pred             CCCEEEEEccCcCHHHHHHHH
Confidence            579999999999999998764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=93.88  E-value=0.023  Score=41.51  Aligned_cols=21  Identities=19%  Similarity=0.254  Sum_probs=18.2

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|..|+-+|.+|
T Consensus       165 ~~~~vvVvG~G~~g~e~a~~l  185 (369)
T 3d1c_A          165 NKGQYVVIGGNESGFDAAYQL  185 (369)
T ss_dssp             CSSEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCcCHHHHHHHH
Confidence            468999999999999988764

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.85  E-value=0.021  Score=44.76  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=18.4

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||++|+.+|..|
T Consensus       170 ~~~~vvViGgG~~g~e~A~~l  190 (458)
T 1lvl_A          170 LPQHLVVVGGGYIGLELGIAY  190 (458)
T ss_dssp             CCSEEEEECCSHHHHHHHHHH
T ss_pred             cCCeEEEECcCHHHHHHHHHH
Confidence            468999999999999999754

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=93.75  E-value=0.023  Score=44.18  Aligned_cols=21  Identities=29%  Similarity=0.501  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||++|+.+|..|
T Consensus       166 ~~~~vvIiGgG~~g~e~A~~l  186 (455)
T 2yqu_A          166 VPKRLIVVGGGVIGLELGVVW  186 (455)
T ss_dssp             CCSEEEEECCSHHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHH
Confidence            358999999999999998753

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=93.71  E-value=0.025  Score=40.42  Aligned_cols=21  Identities=29%  Similarity=0.504  Sum_probs=18.4

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|..|+.+|.+|
T Consensus       143 ~~~~v~VvG~G~~g~e~A~~l  163 (310)
T 1fl2_A          143 KGKRVAVIGGGNSGVEAAIDL  163 (310)
T ss_dssp             BTCEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH
Confidence            578999999999999988754

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=93.71  E-value=0.017  Score=44.83  Aligned_cols=21  Identities=29%  Similarity=0.464  Sum_probs=18.3

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|.+|
T Consensus       145 ~~~~vvVIGgG~~g~E~A~~l  165 (385)
T 3klj_A          145 NKGKAFIIGGGILGIELAQAI  165 (385)
T ss_dssp             HHSCEEEECCSHHHHHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            368999999999999999764

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=93.59  E-value=0.033  Score=42.98  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=19.5

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      +..+++|+|||||..|+.+|.+|
T Consensus       142 ~~~~~~vvViGgG~~g~E~A~~l  164 (408)
T 2gqw_A          142 LRPQSRLLIVGGGVIGLELAATA  164 (408)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH
T ss_pred             hhcCCeEEEECCCHHHHHHHHHH
Confidence            34589999999999999998754

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=93.53  E-value=0.04  Score=39.78  Aligned_cols=21  Identities=33%  Similarity=0.455  Sum_probs=18.7

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|..|+.+|.+|
T Consensus       151 ~~~~v~viG~G~~g~e~a~~l  171 (335)
T 2zbw_A          151 QGKRVLIVGGGDSAVDWALNL  171 (335)
T ss_dssp             TTCEEEEECSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHHH
Confidence            578999999999999998765

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=93.34  E-value=0.034  Score=42.13  Aligned_cols=21  Identities=19%  Similarity=0.268  Sum_probs=18.4

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||+.|+.+|..|
T Consensus       144 ~~~~v~ViGgG~~g~e~A~~l  164 (384)
T 2v3a_A          144 GKRRVLLLGAGLIGCEFANDL  164 (384)
T ss_dssp             TCCEEEEECCSHHHHHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            478999999999999998754

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.33  E-value=0.029  Score=43.54  Aligned_cols=21  Identities=24%  Similarity=0.433  Sum_probs=18.3

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||+.|+.+|..|
T Consensus       169 ~~~~vvViGgG~~g~e~A~~l  189 (455)
T 1ebd_A          169 VPKSLVVIGGGYIGIELGTAY  189 (455)
T ss_dssp             CCSEEEEECCSHHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHH
Confidence            458999999999999998754

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=93.22  E-value=0.032  Score=44.80  Aligned_cols=23  Identities=17%  Similarity=0.228  Sum_probs=19.4

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .-.+|+|+|||+|.+|.-+|.+|
T Consensus       243 ~~~gKrV~VVG~G~SA~ei~~~L  265 (501)
T 4b63_A          243 KSKPYNIAVLGSGQSAAEIFHDL  265 (501)
T ss_dssp             TTSCCEEEEECCSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCcHHHHHHHHHH
Confidence            45789999999999998877654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=93.22  E-value=0.047  Score=40.20  Aligned_cols=21  Identities=33%  Similarity=0.460  Sum_probs=18.7

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|..|+.+|.+|
T Consensus       162 ~~~~vvVvG~G~~g~e~A~~l  182 (360)
T 3ab1_A          162 KGKRVVIVGGGDSALDWTVGL  182 (360)
T ss_dssp             TTCEEEEECSSHHHHHHHHHT
T ss_pred             CCCcEEEECCCHHHHHHHHHH
Confidence            478999999999999998765

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=93.19  E-value=0.061  Score=35.66  Aligned_cols=20  Identities=15%  Similarity=0.293  Sum_probs=17.9

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||+|..|.++|..|
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l   40 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYF   40 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGC
T ss_pred             CCEEEEECCCHHHHHHHHHH
Confidence            78999999999999988764

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=93.16  E-value=0.036  Score=39.61  Aligned_cols=21  Identities=24%  Similarity=0.494  Sum_probs=18.2

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|..|+-+|.+|
T Consensus       142 ~~~~v~VvG~G~~g~e~A~~l  162 (311)
T 2q0l_A          142 KNKEVAVLGGGDTAVEEAIYL  162 (311)
T ss_dssp             TTSEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH
Confidence            468999999999999988753

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=93.16  E-value=0.032  Score=43.80  Aligned_cols=20  Identities=35%  Similarity=0.491  Sum_probs=17.7

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||++|+.+|..|
T Consensus       169 ~~~vvViGgG~~g~e~A~~l  188 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVY  188 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHH
Confidence            58999999999999999754

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=93.04  E-value=0.035  Score=43.77  Aligned_cols=21  Identities=33%  Similarity=0.449  Sum_probs=18.5

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||++|+.+|.+|
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l  205 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETF  205 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHH
Confidence            578999999999999999754

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=93.04  E-value=0.032  Score=45.71  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=19.1

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||+|..|+-+|.+|
T Consensus       183 ~~~krV~VIG~G~tgve~a~~l  204 (545)
T 3uox_A          183 FTGKRVGVIGTGATGVQIIPIA  204 (545)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHH
T ss_pred             cCCCeEEEECCCccHHHHHHHH
Confidence            4689999999999999988654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=93.04  E-value=0.038  Score=39.48  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=18.8

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||+|..|+-+|.+|
T Consensus       143 ~~~~~v~ViG~G~~g~e~A~~l  164 (320)
T 1trb_A          143 YRNQKVAVIGGGNTAVEEALYL  164 (320)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHH
Confidence            3578999999999999998754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=93.00  E-value=0.039  Score=39.90  Aligned_cols=21  Identities=33%  Similarity=0.460  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|..|+-+|.+|
T Consensus       151 ~~~~v~VvG~G~~g~e~A~~l  171 (325)
T 2q7v_A          151 KGKKVVVIGGGDAAVEEGMFL  171 (325)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH
Confidence            468999999999999988653

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=92.99  E-value=0.036  Score=44.28  Aligned_cols=21  Identities=29%  Similarity=0.357  Sum_probs=18.8

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|..|+-+|.+|
T Consensus       144 ~~~~vvVIGgG~~g~e~A~~L  164 (460)
T 1cjc_A          144 SCDTAVILGQGNVALDVARIL  164 (460)
T ss_dssp             TSSEEEEESCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH
Confidence            579999999999999999764

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=92.98  E-value=0.039  Score=39.30  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.0

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||+|+.|+.+|.+|
T Consensus       171 ~~~~~v~vvG~G~~g~e~a~~l  192 (338)
T 3itj_A          171 FRNKPLAVIGGGDSACEEAQFL  192 (338)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHH
Confidence            4678999999999999998754

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=92.98  E-value=0.031  Score=47.01  Aligned_cols=21  Identities=29%  Similarity=0.316  Sum_probs=18.4

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ....++|||||.||+++|.+|
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RL   38 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARL   38 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHH
T ss_pred             CCccEEEECCcHHHHHHHHHH
Confidence            457899999999999999875

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=92.95  E-value=0.037  Score=38.71  Aligned_cols=21  Identities=19%  Similarity=0.355  Sum_probs=18.6

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|+.|+.+|.+|
T Consensus       140 ~~~~v~vvG~G~~~~e~a~~l  160 (297)
T 3fbs_A          140 DQGKIGVIAASPMAIHHALML  160 (297)
T ss_dssp             TTCEEEEECCSTTHHHHHHHG
T ss_pred             cCCEEEEEecCccHHHHHHHh
Confidence            478999999999999998765

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=92.95  E-value=0.04  Score=39.75  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=18.9

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||+|..|+-+|.+|
T Consensus       157 ~~~~~v~VvG~G~~g~e~A~~l  178 (333)
T 1vdc_A          157 FRNKPLAVIGGGDSAMEEANFL  178 (333)
T ss_dssp             GTTSEEEEECCSHHHHHHHHHH
T ss_pred             cCCCeEEEECCChHHHHHHHHH
Confidence            4578999999999999998754

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=92.95  E-value=0.044  Score=42.22  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=19.6

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      +..+++|+|||+|..|+.+|.+|
T Consensus       140 ~~~~~~vvViGgG~~g~E~A~~l  162 (410)
T 3ef6_A          140 WTSATRLLIVGGGLIGCEVATTA  162 (410)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH
T ss_pred             hccCCeEEEECCCHHHHHHHHHH
Confidence            34679999999999999998753

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=92.94  E-value=0.037  Score=45.35  Aligned_cols=23  Identities=26%  Similarity=0.325  Sum_probs=19.6

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+++|+|||+|..|+-+|.+|
T Consensus       175 ~~~~krV~VIG~G~sgve~a~~l  197 (540)
T 3gwf_A          175 SLAGRRVGVIGTGSTGQQVITSL  197 (540)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHH
T ss_pred             ccccceEEEECCCchHHHHHHHH
Confidence            35689999999999999988654

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=92.84  E-value=0.036  Score=45.49  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=18.7

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|..|+-+|.+|
T Consensus       190 ~~krV~VIG~G~sgve~a~~l  210 (549)
T 4ap3_A          190 TGKRVGVIGTGSSGIQSIPII  210 (549)
T ss_dssp             BTCEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHH
Confidence            689999999999999988754

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=92.81  E-value=0.047  Score=42.58  Aligned_cols=23  Identities=26%  Similarity=0.445  Sum_probs=19.5

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      +..+++|+|||||..|+.+|.+|
T Consensus       146 l~~~~~vvViGgG~~g~E~A~~l  168 (431)
T 1q1r_A          146 LIADNRLVVIGGGYIGLEVAATA  168 (431)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH
T ss_pred             hhcCCeEEEECCCHHHHHHHHHH
Confidence            34578999999999999998754

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=92.74  E-value=0.035  Score=45.90  Aligned_cols=20  Identities=30%  Similarity=0.370  Sum_probs=17.7

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+|+|||+|++|+++|.+|
T Consensus        24 ~~d~iivG~G~~g~~~a~~l   43 (587)
T 1gpe_A           24 TYDYIIAGGGLTGLTVAAKL   43 (587)
T ss_dssp             EEEEEEECCSHHHHHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHH
Confidence            45799999999999999875

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=92.73  E-value=0.041  Score=42.91  Aligned_cols=20  Identities=35%  Similarity=0.571  Sum_probs=17.8

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||..|+.+|..|
T Consensus       183 ~~~vvViGgG~~g~e~A~~l  202 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVY  202 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHH
Confidence            68999999999999998754

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=92.70  E-value=0.033  Score=44.11  Aligned_cols=21  Identities=14%  Similarity=0.181  Sum_probs=18.7

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|.+|+-+|.+|
T Consensus       196 ~~k~VvVVG~G~sg~eiA~~l  216 (464)
T 2xve_A          196 KDKTVLLVGSSYSAEDIGSQC  216 (464)
T ss_dssp             TTSEEEEECCSTTHHHHHHHH
T ss_pred             CCCEEEEEcCCCCHHHHHHHH
Confidence            579999999999999998764

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=92.56  E-value=0.045  Score=43.67  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=18.7

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|..|+-+|.+|
T Consensus       146 ~~~~vvVIG~G~~g~e~A~~L  166 (456)
T 1lqt_A          146 SGARAVVIGNGNVALDVARIL  166 (456)
T ss_dssp             CSSEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH
Confidence            578999999999999998754

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=92.53  E-value=0.047  Score=43.81  Aligned_cols=21  Identities=19%  Similarity=0.335  Sum_probs=18.8

Q ss_pred             CCCCcEEEEcccHHHHHhhhc
Q 046761           88 SSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~e  108 (109)
                      ..+++|+|||||..|+-||..
T Consensus       262 ~~gk~VvVIGgG~~a~d~A~~  282 (456)
T 2vdc_G          262 AAGKHVVVLGGGDTAMDCVRT  282 (456)
T ss_dssp             CCCSEEEEECSSHHHHHHHHH
T ss_pred             cCCCEEEEECCChhHHHHHHH
Confidence            568999999999999999864

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=92.49  E-value=0.045  Score=42.78  Aligned_cols=21  Identities=24%  Similarity=0.387  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       166 ~~~~vvViGgG~~g~e~A~~l  186 (450)
T 1ges_A          166 LPERVAVVGAGYIGVELGGVI  186 (450)
T ss_dssp             CCSEEEEECCSHHHHHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            357999999999999999754

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=92.48  E-value=0.047  Score=39.37  Aligned_cols=21  Identities=24%  Similarity=0.336  Sum_probs=18.0

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|+.|+-+|.+|
T Consensus       154 ~~~~v~viG~G~~g~e~a~~l  174 (319)
T 3cty_A          154 KGKRVVTIGGGNSGAIAAISM  174 (319)
T ss_dssp             BTSEEEEECCSHHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHH
Confidence            468999999999999988653

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=92.40  E-value=0.053  Score=39.66  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=18.9

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||+|..|+-+|.+|
T Consensus       153 ~~~~~v~ViG~G~~g~e~a~~l  174 (335)
T 2a87_A          153 FRDQDIAVIGGGDSAMEEATFL  174 (335)
T ss_dssp             GTTCEEEEECSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHH
Confidence            3578999999999999988754

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=92.30  E-value=0.043  Score=42.01  Aligned_cols=20  Identities=40%  Similarity=0.428  Sum_probs=17.7

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||+.|+.+|..|
T Consensus       143 ~~~vvViGgG~~g~E~A~~l  162 (367)
T 1xhc_A          143 SGEAIIIGGGFIGLELAGNL  162 (367)
T ss_dssp             HSEEEEEECSHHHHHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHH
Confidence            47999999999999999754

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=92.29  E-value=0.056  Score=42.74  Aligned_cols=22  Identities=18%  Similarity=0.335  Sum_probs=18.9

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||||..|+.+|.+|
T Consensus       192 ~~~~~vvVIGgG~ig~E~A~~l  213 (490)
T 2bc0_A          192 KDIKRVAVVGAGYIGVELAEAF  213 (490)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHH
T ss_pred             cCCceEEEECCCHHHHHHHHHH
Confidence            4578999999999999998753

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=92.05  E-value=0.06  Score=41.71  Aligned_cols=21  Identities=29%  Similarity=0.427  Sum_probs=18.3

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       147 ~~~~vvViGgG~~g~E~A~~l  167 (449)
T 3kd9_A          147 KVENVVIIGGGYIGIEMAEAF  167 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHH
Confidence            578999999999999998653

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=91.92  E-value=0.058  Score=43.04  Aligned_cols=21  Identities=33%  Similarity=0.502  Sum_probs=18.3

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|.+|
T Consensus       179 ~~~~vvViGgG~iG~E~A~~l  199 (493)
T 1m6i_A          179 EVKSITIIGGGFLGSELACAL  199 (493)
T ss_dssp             HCSEEEEECCSHHHHHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            478999999999999998753

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=91.92  E-value=0.076  Score=35.63  Aligned_cols=22  Identities=14%  Similarity=0.154  Sum_probs=18.2

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+.+|+|||+|..|+.+|..|
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L   38 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLA   38 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHH
T ss_pred             cCCCcEEEECCCHHHHHHHHHH
Confidence            4567899999999999888653

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=91.87  E-value=0.059  Score=42.40  Aligned_cols=21  Identities=33%  Similarity=0.471  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       165 ~~~~vvVvGgG~~g~e~A~~l  185 (463)
T 2r9z_A          165 QPKRVAIIGAGYIGIELAGLL  185 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHHH
T ss_pred             cCCEEEEECCCHHHHHHHHHH
Confidence            357999999999999999754

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=91.83  E-value=0.06  Score=42.60  Aligned_cols=21  Identities=24%  Similarity=0.423  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       150 ~~~~vvViGgG~~g~e~A~~l  170 (565)
T 3ntd_A          150 NVEHATVVGGGFIGLEMMESL  170 (565)
T ss_dssp             TCSEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH
Confidence            467999999999999998753

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=91.78  E-value=0.062  Score=41.94  Aligned_cols=20  Identities=25%  Similarity=0.363  Sum_probs=17.7

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||..|+.+|..|
T Consensus       178 ~~~vvViGgG~~g~E~A~~l  197 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVW  197 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHH
Confidence            58999999999999998753

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=91.74  E-value=0.063  Score=41.78  Aligned_cols=21  Identities=24%  Similarity=0.355  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       170 ~~~~vvViGgG~~g~E~A~~l  190 (464)
T 2a8x_A          170 LPKSIIIAGAGAIGMEFGYVL  190 (464)
T ss_dssp             CCSEEEEECCSHHHHHHHHHH
T ss_pred             cCCeEEEECCcHHHHHHHHHH
Confidence            458999999999999998753

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=91.73  E-value=0.068  Score=43.22  Aligned_cols=21  Identities=19%  Similarity=0.080  Sum_probs=18.0

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+-+|..|
T Consensus       285 ~~~~vvViGgG~~g~E~A~~l  305 (598)
T 2x8g_A          285 FPGKTLVIGASYVALECAGFL  305 (598)
T ss_dssp             CCCSEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH
Confidence            356899999999999999754

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=91.70  E-value=0.051  Score=42.14  Aligned_cols=21  Identities=24%  Similarity=0.306  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       176 ~~~~vvViGgG~~g~e~A~~l  196 (470)
T 1dxl_A          176 IPKKLVVIGAGYIGLEMGSVW  196 (470)
T ss_dssp             CCSEEEESCCSHHHHHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            468999999999999998753

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=91.66  E-value=0.065  Score=42.16  Aligned_cols=21  Identities=33%  Similarity=0.463  Sum_probs=18.3

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l  204 (482)
T 1ojt_A          184 VPGKLLIIGGGIIGLEMGTVY  204 (482)
T ss_dssp             CCSEEEEESCSHHHHHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            368999999999999998753

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=91.53  E-value=0.078  Score=37.38  Aligned_cols=21  Identities=33%  Similarity=0.551  Sum_probs=18.2

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|+.|+-+|.+|
T Consensus       153 ~~~~v~vvG~G~~~~e~a~~l  173 (323)
T 3f8d_A          153 KNRVVAVIGGGDSALEGAEIL  173 (323)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH
Confidence            468999999999999988754

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=91.50  E-value=0.079  Score=37.36  Aligned_cols=21  Identities=33%  Similarity=0.548  Sum_probs=18.3

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|+.|+.+|.+|
T Consensus       146 ~~~~v~viG~g~~~~e~a~~l  166 (315)
T 3r9u_A          146 KNKEVAVLGGGDTALEEALYL  166 (315)
T ss_dssp             TTSEEEEECCBHHHHHHHHHH
T ss_pred             CcCEEEEECCCHHHHHHHHHH
Confidence            468999999999999998754

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=91.48  E-value=0.069  Score=42.46  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=18.4

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       173 ~~k~vvViGgG~ig~E~A~~l  193 (492)
T 3ic9_A          173 LPKSVAVFGPGVIGLELGQAL  193 (492)
T ss_dssp             CCSEEEEESSCHHHHHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            478999999999999998754

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=91.17  E-value=0.085  Score=40.32  Aligned_cols=20  Identities=35%  Similarity=0.486  Sum_probs=17.8

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||+|..|+.+|..|
T Consensus       152 ~~~vvViGgG~~g~e~A~~l  171 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVL  171 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHH
Confidence            78999999999999998753

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=91.11  E-value=0.08  Score=41.23  Aligned_cols=21  Identities=19%  Similarity=0.355  Sum_probs=18.0

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       175 ~~~~vvViGgG~~g~E~A~~l  195 (467)
T 1zk7_A          175 IPERLAVIGSSVVALELAQAF  195 (467)
T ss_dssp             CCSEEEEECCSHHHHHHHHHH
T ss_pred             cCCEEEEECCCHHHHHHHHHH
Confidence            468999999999999988653

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=90.98  E-value=0.088  Score=43.62  Aligned_cols=23  Identities=26%  Similarity=0.304  Sum_probs=19.5

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+++|+|||||..|+-+|.+|
T Consensus       491 ~~~~~~VvVIGgG~~g~E~A~~l  513 (671)
T 1ps9_A          491 APVGNKVAIIGCGGIGFDTAMYL  513 (671)
T ss_dssp             CCCCSEEEEECCHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCChhHHHHHHHH
Confidence            34678999999999999998754

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=90.83  E-value=0.089  Score=40.18  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=18.2

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|..|+.+|.+|
T Consensus       141 ~~~~vvViGgG~~g~e~A~~l  161 (404)
T 3fg2_P          141 DKKHVVVIGAGFIGLEFAATA  161 (404)
T ss_dssp             GCSEEEEECCSHHHHHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            478999999999999998753

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=90.77  E-value=0.089  Score=41.44  Aligned_cols=21  Identities=24%  Similarity=0.366  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l  204 (479)
T 2hqm_A          184 QPKKVVVVGAGYIGIELAGVF  204 (479)
T ss_dssp             CCSEEEEECSSHHHHHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            468999999999999998753

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=90.76  E-value=0.084  Score=42.51  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.0

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||||..|+-+|.+|
T Consensus       353 ~~~k~V~ViGgG~~g~E~A~~L  374 (521)
T 1hyu_A          353 FKGKRVAVIGGGNSGVEAAIDL  374 (521)
T ss_dssp             GBTSEEEEECCSHHHHHHHHHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHH
Confidence            4578999999999999998764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=90.75  E-value=0.097  Score=37.16  Aligned_cols=21  Identities=33%  Similarity=0.597  Sum_probs=18.2

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|..|+.+|.+|
T Consensus       153 ~~~~v~vvG~g~~~~e~a~~l  173 (332)
T 3lzw_A          153 AGRRVAILGGGDSAVDWALML  173 (332)
T ss_dssp             BTCEEEEECSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCHhHHHHHHHH
Confidence            478999999999999998653

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=90.65  E-value=0.093  Score=41.25  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       197 ~~~~vvViGgG~~g~E~A~~l  217 (491)
T 3urh_A          197 VPASMIVVGGGVIGLELGSVW  217 (491)
T ss_dssp             CCSEEEEECCSHHHHHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            468999999999999998753

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=90.55  E-value=0.095  Score=41.62  Aligned_cols=20  Identities=30%  Similarity=0.552  Sum_probs=17.8

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||..|+.+|..|
T Consensus       176 ~~~vvViGgG~ig~E~A~~l  195 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVI  195 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHH
T ss_pred             CCeEEEECChHHHHHHHHHH
Confidence            78999999999999998753

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=90.47  E-value=0.11  Score=40.87  Aligned_cols=20  Identities=20%  Similarity=0.187  Sum_probs=17.4

Q ss_pred             CCCcEEEEcccHHHHHhhhc
Q 046761           89 SDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~e  108 (109)
                      ..++|+|||||..|+.+|..
T Consensus       146 ~~~~vvViGgG~ig~E~A~~  165 (437)
T 4eqs_A          146 QVDKVLVVGAGYVSLEVLEN  165 (437)
T ss_dssp             TCCEEEEECCSHHHHHHHHH
T ss_pred             CCcEEEEECCccchhhhHHH
Confidence            35789999999999999865

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=90.38  E-value=0.1  Score=40.76  Aligned_cols=20  Identities=20%  Similarity=0.315  Sum_probs=17.6

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||..|+.+|..|
T Consensus       187 ~~~vvViGgG~~g~E~A~~l  206 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGIL  206 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHH
T ss_pred             CccEEEECCCHHHHHHHHHH
Confidence            58999999999999998753

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=90.33  E-value=0.1  Score=40.61  Aligned_cols=21  Identities=33%  Similarity=0.496  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       173 ~~~~vvViGgG~~g~E~A~~l  193 (468)
T 2qae_A          173 VPKTMVVIGGGVIGLELGSVW  193 (468)
T ss_dssp             CCSEEEEECCSHHHHHHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHH
Confidence            458999999999999998753

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=90.16  E-value=0.1  Score=42.24  Aligned_cols=19  Identities=21%  Similarity=0.356  Sum_probs=16.8

Q ss_pred             CcEEEEcccHHHHHhhhcC
Q 046761           91 PCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        91 kkVAVIGgGpAGLacA~eL  109 (109)
                      .+|+|||||+.|+.+|.+|
T Consensus       218 ~~vvVvGgG~tGvE~A~~l  236 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGEL  236 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHH
T ss_pred             cceEEECCCcchhhhHHHH
Confidence            5799999999999998764

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=90.16  E-value=0.11  Score=40.28  Aligned_cols=21  Identities=24%  Similarity=0.343  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       148 ~~~~vvViGgG~~g~E~A~~l  168 (452)
T 2cdu_A          148 KAKTITIIGSGYIGAELAEAY  168 (452)
T ss_dssp             GCSEEEEECCSHHHHHHHHHH
T ss_pred             cCCeEEEECcCHHHHHHHHHH
Confidence            468999999999999998653

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=90.10  E-value=0.12  Score=40.51  Aligned_cols=20  Identities=25%  Similarity=0.225  Sum_probs=17.6

Q ss_pred             CCCcEEEEcccHHHHHhhhc
Q 046761           89 SDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~e  108 (109)
                      .+.+|+|||+|.+|+.+|..
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~  190 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIAT  190 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHH
Confidence            68899999999999998753

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=90.03  E-value=0.11  Score=40.60  Aligned_cols=21  Identities=24%  Similarity=0.362  Sum_probs=18.2

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       171 ~~~~vvViGgG~~g~e~A~~l  191 (466)
T 3l8k_A          171 LPQDMVIIGAGYIGLEIASIF  191 (466)
T ss_dssp             CCSEEEEECCSHHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHH
Confidence            468999999999999998753

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=89.69  E-value=0.13  Score=40.53  Aligned_cols=21  Identities=19%  Similarity=0.145  Sum_probs=17.8

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l  204 (488)
T 3dgz_A          184 SPGKTLVVGASYVALECAGFL  204 (488)
T ss_dssp             CCCSEEEECCSHHHHHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            456899999999999998753

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=89.45  E-value=0.14  Score=41.18  Aligned_cols=21  Identities=24%  Similarity=0.406  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       186 ~~~~vvViGgG~~g~e~A~~l  206 (588)
T 3ics_A          186 KPRHATVIGGGFIGVEMVENL  206 (588)
T ss_dssp             CCSEEEEECCSHHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHH
Confidence            468999999999999998753

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=89.16  E-value=0.15  Score=40.69  Aligned_cols=20  Identities=35%  Similarity=0.335  Sum_probs=17.4

Q ss_pred             CCCcEEEEcccHHHHHhhhc
Q 046761           89 SDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~e  108 (109)
                      .+.+|+|||+|.+|+.+|..
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~  190 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGA  190 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHH
Confidence            57899999999999998753

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=88.99  E-value=0.17  Score=39.40  Aligned_cols=21  Identities=33%  Similarity=0.507  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       179 ~~~~v~ViGgG~~g~e~A~~l  199 (476)
T 3lad_A          179 VPGKLGVIGAGVIGLELGSVW  199 (476)
T ss_dssp             CCSEEEEECCSHHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHH
Confidence            468999999999999998653

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=88.99  E-value=0.15  Score=40.85  Aligned_cols=21  Identities=14%  Similarity=0.112  Sum_probs=17.7

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       209 ~~~~vvVIGgG~ig~E~A~~l  229 (519)
T 3qfa_A          209 CPGKTLVVGASYVALECAGFL  229 (519)
T ss_dssp             CCCSEEEECCSHHHHHHHHHH
T ss_pred             cCCeEEEECCcHHHHHHHHHH
Confidence            346799999999999998753

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=88.99  E-value=0.16  Score=39.48  Aligned_cols=21  Identities=24%  Similarity=0.336  Sum_probs=18.2

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|..|+.+|..|
T Consensus       146 ~~~~vvViGgG~~g~E~A~~l  166 (452)
T 3oc4_A          146 NSQTVAVIGAGPIGMEAIDFL  166 (452)
T ss_dssp             TCSEEEEECCSHHHHHHHHHH
T ss_pred             cCCEEEEECCCHHHHHHHHHH
Confidence            468999999999999998753

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=88.98  E-value=0.15  Score=40.66  Aligned_cols=21  Identities=19%  Similarity=0.384  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       190 ~~~~vvViGgG~ig~E~A~~l  210 (495)
T 2wpf_A          190 PPRRVLTVGGGFISVEFAGIF  210 (495)
T ss_dssp             CCSEEEEECSSHHHHHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            368999999999999998754

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=88.97  E-value=0.19  Score=39.76  Aligned_cols=22  Identities=14%  Similarity=0.277  Sum_probs=18.1

Q ss_pred             CCCCCcEEEEcccHHHHHhhhc
Q 046761           87 VSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      .....||+|||+|..|.++|+.
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~   37 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAIS   37 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHH
T ss_pred             cCCCCEEEEECCCHHHHHHHHH
Confidence            3456799999999999998874

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=88.96  E-value=0.18  Score=34.32  Aligned_cols=21  Identities=24%  Similarity=0.080  Sum_probs=17.7

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+.+|+|||.|..|..+|..|
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L   58 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDEL   58 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHH
Confidence            466899999999999988654

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=88.84  E-value=0.16  Score=40.40  Aligned_cols=21  Identities=14%  Similarity=0.327  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+.+|..|
T Consensus       186 ~~~~vvViGgG~ig~E~A~~l  206 (490)
T 1fec_A          186 APKRALCVGGGYISIEFAGIF  206 (490)
T ss_dssp             CCSEEEEECSSHHHHHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            467999999999999998753

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=88.84  E-value=0.16  Score=39.53  Aligned_cols=21  Identities=29%  Similarity=0.495  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|..|+.+|..|
T Consensus       158 ~~~~vvViGgG~~g~e~A~~l  178 (472)
T 3iwa_A          158 EVSKAVIVGGGFIGLEMAVSL  178 (472)
T ss_dssp             SCSEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH
Confidence            468999999999999988653

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=88.52  E-value=0.17  Score=39.62  Aligned_cols=21  Identities=19%  Similarity=0.191  Sum_probs=17.9

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||..|+-+|..|
T Consensus       186 ~~~~vvViGgG~~g~E~A~~l  206 (483)
T 3dgh_A          186 EPGKTLVVGAGYIGLECAGFL  206 (483)
T ss_dssp             CCCEEEEECCSHHHHHHHHHH
T ss_pred             cCCcEEEECCCHHHHHHHHHH
Confidence            457999999999999998753

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=87.96  E-value=0.21  Score=38.80  Aligned_cols=19  Identities=26%  Similarity=0.359  Sum_probs=16.7

Q ss_pred             CCcEEEEcccHHHHHhhhc
Q 046761           90 DPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~e  108 (109)
                      +++|+|||+|.+|+++|..
T Consensus       167 ~~~VlViGaGgvG~~aa~~  185 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKM  185 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHH
Confidence            4899999999999998754

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=87.35  E-value=0.22  Score=39.89  Aligned_cols=20  Identities=15%  Similarity=0.356  Sum_probs=17.4

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||..|+.+|..|
T Consensus       214 g~~vvViGgG~~g~E~A~~l  233 (523)
T 1mo9_A          214 GSTVVVVGGSKTAVEYGCFF  233 (523)
T ss_dssp             CSEEEEECCSHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHH
Confidence            48999999999999988653

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=87.35  E-value=0.21  Score=40.16  Aligned_cols=21  Identities=33%  Similarity=0.442  Sum_probs=18.2

Q ss_pred             CCCCcEEEEcccHHHHHhhhc
Q 046761           88 SSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~e  108 (109)
                      ..+|+|+|||+|..|+-+|.+
T Consensus       184 ~~gk~V~VIG~G~sg~e~a~~  204 (542)
T 1w4x_A          184 FSGQRVGVIGTGSSGIQVSPQ  204 (542)
T ss_dssp             CBTCEEEEECCSHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHH
Confidence            368999999999999988764

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=87.18  E-value=0.25  Score=36.68  Aligned_cols=21  Identities=29%  Similarity=0.289  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|-+|.++|..|
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L  138 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPL  138 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHH
Confidence            578999999999999988754

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=87.02  E-value=0.25  Score=40.73  Aligned_cols=20  Identities=20%  Similarity=0.292  Sum_probs=17.3

Q ss_pred             CCCcEEEEcccHHHHHhhhc
Q 046761           89 SDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~e  108 (109)
                      .+.+|+|||+|.+|+.+|..
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~  208 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIAT  208 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHH
Confidence            46799999999999998853

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=87.01  E-value=0.26  Score=37.21  Aligned_cols=21  Identities=19%  Similarity=0.145  Sum_probs=17.9

Q ss_pred             CCCCcEEEEcccHHHHHhhhc
Q 046761           88 SSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~e  108 (109)
                      -++++|+|||||..|...|-.
T Consensus        29 L~gk~VLVVGgG~va~~ka~~   49 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKG   49 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHH
Confidence            478999999999999987643

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=86.68  E-value=0.41  Score=38.15  Aligned_cols=21  Identities=14%  Similarity=0.175  Sum_probs=18.1

Q ss_pred             CCCCcEEEEcccHHHHHhhhc
Q 046761           88 SSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~e  108 (109)
                      ....||+|||+|..|.++|+.
T Consensus        19 ~~~~kV~ViGaG~vG~~~a~~   39 (330)
T 3ldh_A           19 RSYNKITVVGCDAVGMADAIS   39 (330)
T ss_dssp             CCCCEEEEESTTHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHH
Confidence            356899999999999999864

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=86.58  E-value=0.33  Score=41.09  Aligned_cols=37  Identities=16%  Similarity=0.118  Sum_probs=25.6

Q ss_pred             chhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           68 RRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        68 r~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ++++.+........     .-.+++|+|+|+|..|++||..|
T Consensus       248 ~~sl~dgi~r~tg~-----~L~GKtVvVtGaGgIG~aiA~~L  284 (488)
T 3ond_A          248 RHSLPDGLMRATDV-----MIAGKVAVVAGYGDVGKGCAAAL  284 (488)
T ss_dssp             HHHHHHHHHHHHCC-----CCTTCEEEEECCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHcCC-----cccCCEEEEECCCHHHHHHHHHH
Confidence            45555554433222     24789999999999999998653

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=86.46  E-value=0.29  Score=38.46  Aligned_cols=21  Identities=24%  Similarity=0.284  Sum_probs=17.9

Q ss_pred             CCCCcEEEEcccHHHHHhhhc
Q 046761           88 SSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~e  108 (109)
                      -.+++|+|||+|..|+.+|..
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~  186 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARI  186 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHH
Confidence            357899999999999998753

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=86.29  E-value=0.28  Score=38.75  Aligned_cols=20  Identities=10%  Similarity=0.159  Sum_probs=17.4

Q ss_pred             CCCcEEEEcccHHHHHhhhc
Q 046761           89 SDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~e  108 (109)
                      .+++|+|||||..|+.+|..
T Consensus       181 ~~~~vvViGgG~ig~E~A~~  200 (499)
T 1xdi_A          181 LPDHLIVVGSGVTGAEFVDA  200 (499)
T ss_dssp             CCSSEEEESCSHHHHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHH
Confidence            45899999999999998865

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=86.26  E-value=0.3  Score=37.25  Aligned_cols=22  Identities=18%  Similarity=0.241  Sum_probs=18.6

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||+|.+|.++|..|
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L  160 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSL  160 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH
T ss_pred             CCCCEEEEECcHHHHHHHHHHH
Confidence            3578999999999999988654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=85.81  E-value=0.32  Score=39.81  Aligned_cols=20  Identities=20%  Similarity=0.228  Sum_probs=17.4

Q ss_pred             CCCcEEEEcccHHHHHhhhc
Q 046761           89 SDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~e  108 (109)
                      .+.+|+|||+|.+|+.+|..
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~  202 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALAT  202 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHH
Confidence            56899999999999998853

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=85.64  E-value=0.34  Score=37.66  Aligned_cols=20  Identities=25%  Similarity=0.423  Sum_probs=17.3

Q ss_pred             CCCcEEEEcccHHHHHhhhc
Q 046761           89 SDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~e  108 (109)
                      .+++|+|||+|..|+.+|..
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~  184 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKI  184 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHH
Confidence            45899999999999998754

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=85.48  E-value=0.31  Score=36.28  Aligned_cols=21  Identities=33%  Similarity=0.376  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|-+|.++|..|
T Consensus       118 ~~~~vlvlGaGg~g~a~a~~L  138 (272)
T 1p77_A          118 PNQHVLILGAGGATKGVLLPL  138 (272)
T ss_dssp             TTCEEEEECCSHHHHTTHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHH
Confidence            578999999999999988754

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=85.15  E-value=0.34  Score=37.77  Aligned_cols=20  Identities=20%  Similarity=0.366  Sum_probs=17.6

Q ss_pred             CCCcEEEEcccHHHHHhhhc
Q 046761           89 SDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~e  108 (109)
                      .+++|+|||||..|+.+|..
T Consensus       169 ~~~~v~ViGgG~~g~e~A~~  188 (463)
T 4dna_A          169 LPESILIAGGGYIAVEFANI  188 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHH
Confidence            47899999999999998865

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=85.14  E-value=0.32  Score=42.93  Aligned_cols=20  Identities=15%  Similarity=0.190  Sum_probs=17.4

Q ss_pred             CCCcEEEEcccHHHHHhhhc
Q 046761           89 SDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~e  108 (109)
                      .+++|+|||||..|+-||..
T Consensus       331 ~~~~VvVIGgG~~g~e~A~~  350 (1025)
T 1gte_A          331 IRGAVIVLGAGDTAFDCATS  350 (1025)
T ss_dssp             CCSEEEEECSSHHHHHHHHH
T ss_pred             cCCcEEEECCChHHHHHHHH
Confidence            35699999999999999865

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=84.84  E-value=0.35  Score=37.98  Aligned_cols=20  Identities=20%  Similarity=0.441  Sum_probs=17.5

Q ss_pred             CCCcEEEEcccHHHHHhhhc
Q 046761           89 SDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~e  108 (109)
                      .+++|+|||+|..|+.+|..
T Consensus       190 ~~~~v~ViGgG~~g~e~A~~  209 (484)
T 3o0h_A          190 LPKSIVIVGGGYIGVEFANI  209 (484)
T ss_dssp             CCSEEEEECCSHHHHHHHHH
T ss_pred             cCCcEEEECcCHHHHHHHHH
Confidence            46899999999999988864

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=84.43  E-value=0.38  Score=39.93  Aligned_cols=19  Identities=16%  Similarity=0.071  Sum_probs=16.5

Q ss_pred             CCcEEEEcccHHHHHhhhc
Q 046761           90 DPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~e  108 (109)
                      +++++|||||..|+..|..
T Consensus       223 P~~lvIIGgG~IGlE~A~~  241 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGF  241 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHH
Confidence            4789999999999998854

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=84.31  E-value=0.42  Score=35.76  Aligned_cols=21  Identities=14%  Similarity=0.248  Sum_probs=18.4

Q ss_pred             CCCCcEEEEcccHHHHHhhhc
Q 046761           88 SSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~e  108 (109)
                      -.+++|.|||.|..|.++|..
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~  173 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARK  173 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHH
T ss_pred             CCCCEEEEEeeCHHHHHHHHH
Confidence            468899999999999998864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=84.27  E-value=0.33  Score=40.96  Aligned_cols=23  Identities=17%  Similarity=-0.000  Sum_probs=19.4

Q ss_pred             CCCCCcEEEEc--ccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIG--GGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIG--gGpAGLacA~eL  109 (109)
                      ...+++|+|||  ||..|+-+|..|
T Consensus       525 ~~~gk~VvVIG~GgG~~g~e~A~~l  549 (729)
T 1o94_A          525 KKIGKRVVILNADTYFMAPSLAEKL  549 (729)
T ss_dssp             SCCCSEEEEEECCCSSHHHHHHHHH
T ss_pred             CCCCCeEEEEcCCCCchHHHHHHHH
Confidence            35688999999  999999998754

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=84.25  E-value=0.41  Score=37.80  Aligned_cols=21  Identities=19%  Similarity=0.237  Sum_probs=18.1

Q ss_pred             CCCCcEEEEcccHHHHHhhhc
Q 046761           88 SSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~e  108 (109)
                      ..+++|+|||+|..|..+|..
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~  185 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKS  185 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHH
T ss_pred             ccCCEEEEEChHHHHHHHHHH
Confidence            368899999999999998754

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=83.65  E-value=0.68  Score=34.61  Aligned_cols=21  Identities=19%  Similarity=0.029  Sum_probs=17.1

Q ss_pred             CCCCcEEEEc-ccHHHHHhhhc
Q 046761           88 SSDPCVGIIG-GGMARLALSLV  108 (109)
Q Consensus        88 ~~~kkVAVIG-gGpAGLacA~e  108 (109)
                      +..++|+||| .|..|.+.|..
T Consensus        19 ~~~~~I~iIGg~G~mG~~la~~   40 (298)
T 2pv7_A           19 SDIHKIVIVGGYGKLGGLFARY   40 (298)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCHHHHHHHHH
Confidence            3456899999 99999988754

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=83.42  E-value=0.57  Score=39.87  Aligned_cols=36  Identities=8%  Similarity=-0.010  Sum_probs=25.3

Q ss_pred             chhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhc
Q 046761           68 RRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        68 r~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      |+|+.+.......     ..-.+++|+|||.|..|..||..
T Consensus       230 ~eslvdgI~Ratg-----~~L~GKTVgVIG~G~IGr~vA~~  265 (464)
T 3n58_A          230 KESLVDGIRRGTD-----VMMAGKVAVVCGYGDVGKGSAQS  265 (464)
T ss_dssp             HHHHHHHHHHHHC-----CCCTTCEEEEECCSHHHHHHHHH
T ss_pred             hHHHHHHHHHhcC-----CcccCCEEEEECcCHHHHHHHHH
Confidence            4555554433322     24588999999999999999864

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=83.40  E-value=0.46  Score=39.33  Aligned_cols=22  Identities=18%  Similarity=0.065  Sum_probs=18.8

Q ss_pred             CCCCCcEEEEcccHHHHHhhhc
Q 046761           87 VSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      .-.+.+|+|+|+|-||..||--
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkl  210 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKF  210 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHH
T ss_pred             CCCCcEEEEECCCHHHHHHHHH
Confidence            3477899999999999999853

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=83.33  E-value=0.59  Score=38.88  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=18.8

Q ss_pred             CCCCCCcEEEEcccHHHHHhhh
Q 046761           86 PVSSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~  107 (109)
                      ..-.+-+|+|+|+|-||++||-
T Consensus       184 ~~l~d~kVVi~GAGaAG~~iA~  205 (398)
T 2a9f_A          184 KSLDEVSIVVNGGGSAGLSITR  205 (398)
T ss_dssp             CCTTSCEEEEECCSHHHHHHHH
T ss_pred             CCCCccEEEEECCCHHHHHHHH
Confidence            3456779999999999999985

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=83.26  E-value=0.49  Score=36.25  Aligned_cols=22  Identities=23%  Similarity=0.208  Sum_probs=18.5

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||+|-+|.++|..|
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L  146 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYAL  146 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHH
Confidence            4678999999999998887654

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=83.08  E-value=0.48  Score=39.35  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=19.0

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|+|+|-||.+||..|
T Consensus       184 l~~~rvlvlGAGgAg~aia~~L  205 (439)
T 2dvm_A          184 ISEITLALFGAGAAGFATLRIL  205 (439)
T ss_dssp             TTTCCEEEECCSHHHHHHHHHH
T ss_pred             ccCCEEEEECccHHHHHHHHHH
Confidence            4678999999999999998754

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=83.00  E-value=0.5  Score=35.35  Aligned_cols=22  Identities=14%  Similarity=0.270  Sum_probs=18.8

Q ss_pred             CCCCCcEEEEcccHHHHHhhhc
Q 046761           87 VSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      .-.+++|.|||.|..|.++|..
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~  175 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIART  175 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHH
T ss_pred             CCCCCEEEEEcccHHHHHHHHH
Confidence            3468899999999999998864

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=82.94  E-value=0.52  Score=35.16  Aligned_cols=21  Identities=33%  Similarity=0.393  Sum_probs=17.8

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|+|+|-+|.++|..|
T Consensus       127 ~~k~vlV~GaGgiG~aia~~L  147 (287)
T 1nvt_A          127 KDKNIVIYGAGGAARAVAFEL  147 (287)
T ss_dssp             CSCEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHH
Confidence            578999999999998888654

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=82.64  E-value=0.41  Score=35.61  Aligned_cols=21  Identities=24%  Similarity=0.376  Sum_probs=17.8

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|-+|.+.|..|
T Consensus       128 ~~~~v~iiGaG~~g~aia~~L  148 (275)
T 2hk9_A          128 KEKSILVLGAGGASRAVIYAL  148 (275)
T ss_dssp             GGSEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHH
Confidence            568999999999999888643

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=82.38  E-value=0.55  Score=36.87  Aligned_cols=22  Identities=18%  Similarity=0.210  Sum_probs=18.8

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||+|-+|.++|..|
T Consensus       146 l~gk~~lVlGAGGaaraia~~L  167 (312)
T 3t4e_A          146 MRGKTMVLLGAGGAATAIGAQA  167 (312)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH
T ss_pred             cCCCEEEEECcCHHHHHHHHHH
Confidence            4688999999999999988754

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=82.29  E-value=0.53  Score=36.35  Aligned_cols=20  Identities=30%  Similarity=0.242  Sum_probs=17.9

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||+|-+|.++|..|
T Consensus       118 ~k~vlvlGaGGaaraia~~L  137 (269)
T 3phh_A          118 YQNALILGAGGSAKALACEL  137 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHH
Confidence            89999999999999988754

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=82.19  E-value=0.36  Score=42.36  Aligned_cols=21  Identities=10%  Similarity=0.063  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|+.|+.+|..|
T Consensus       283 ~gk~vvViGgG~~g~E~A~~L  303 (965)
T 2gag_A          283 AGARIAVATTNDSAYELVREL  303 (965)
T ss_dssp             SCSSEEEEESSTTHHHHHHHH
T ss_pred             CCCeEEEEcCCHHHHHHHHHH
Confidence            468999999999999998754

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=82.08  E-value=0.57  Score=35.78  Aligned_cols=22  Identities=23%  Similarity=0.172  Sum_probs=18.6

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||+|-+|.++|..|
T Consensus       118 l~~k~~lvlGaGg~~~aia~~L  139 (272)
T 3pwz_A          118 LRNRRVLLLGAGGAVRGALLPF  139 (272)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHH
T ss_pred             ccCCEEEEECccHHHHHHHHHH
Confidence            4689999999999999888654

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=81.42  E-value=0.61  Score=36.65  Aligned_cols=22  Identities=23%  Similarity=0.193  Sum_probs=18.6

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|+|+|-+|.++|..|
T Consensus       152 l~gk~~lVlGaGG~g~aia~~L  173 (315)
T 3tnl_A          152 IIGKKMTICGAGGAATAICIQA  173 (315)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHH
T ss_pred             ccCCEEEEECCChHHHHHHHHH
Confidence            4688999999999999888654

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=81.40  E-value=0.6  Score=39.17  Aligned_cols=22  Identities=14%  Similarity=0.012  Sum_probs=19.5

Q ss_pred             CCCCCcEEEEcccHHHHHhhhc
Q 046761           87 VSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      .-.+++|+|||.|..|..||..
T Consensus       217 ~L~GktV~ViG~G~IGk~vA~~  238 (435)
T 3gvp_A          217 MFGGKQVVVCGYGEVGKGCCAA  238 (435)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHH
T ss_pred             eecCCEEEEEeeCHHHHHHHHH
Confidence            4578999999999999999864

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=81.39  E-value=0.63  Score=35.67  Aligned_cols=22  Identities=23%  Similarity=0.206  Sum_probs=18.4

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||+|-+|.++|..|
T Consensus       124 l~~k~vlvlGaGg~g~aia~~L  145 (281)
T 3o8q_A          124 LKGATILLIGAGGAARGVLKPL  145 (281)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH
T ss_pred             ccCCEEEEECchHHHHHHHHHH
Confidence            3688999999999999887653

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=81.30  E-value=0.5  Score=36.34  Aligned_cols=21  Identities=29%  Similarity=0.382  Sum_probs=18.1

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|-+|.++|..|
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L  136 (277)
T 3don_A          116 EDAYILILGAGGASKGIANEL  136 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHH
Confidence            578999999999999988654

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=80.70  E-value=0.5  Score=35.03  Aligned_cols=21  Identities=38%  Similarity=0.246  Sum_probs=17.6

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||+|-.|..+|..|
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~L   50 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYL   50 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHH
T ss_pred             hCCeEEEEeeCHHHHHHHHHH
Confidence            457899999999999888654

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=80.47  E-value=0.71  Score=33.46  Aligned_cols=23  Identities=9%  Similarity=0.104  Sum_probs=16.8

Q ss_pred             CCCCCCcEEEEcccHHHHHhhhc
Q 046761           86 PVSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      .-...++|+|||.|-.|.+.|..
T Consensus        15 ~~~~~~kIgiIG~G~mG~alA~~   37 (245)
T 3dtt_A           15 LYFQGMKIAVLGTGTVGRTMAGA   37 (245)
T ss_dssp             ----CCEEEEECCSHHHHHHHHH
T ss_pred             cccCCCeEEEECCCHHHHHHHHH
Confidence            34567899999999999988754

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=80.05  E-value=0.56  Score=36.31  Aligned_cols=22  Identities=23%  Similarity=0.217  Sum_probs=18.7

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||+|-+|.++|..|
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L  141 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYL  141 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHH
T ss_pred             ccCCEEEEECCcHHHHHHHHHH
Confidence            4688999999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	109
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.71
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.31
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.31
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.0
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	97.93
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.78
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.44
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	97.4
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	97.27
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.22
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.02
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.01
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.99
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.91
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.9
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.89
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.74
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.72
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.7
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.6
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.6
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	96.58
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	96.52
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.44
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	96.42
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.26
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.26
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.11
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	95.89
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	95.8
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.71
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.32
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.32
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	94.81
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.46
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	94.03
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.6
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	93.07
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	92.76
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	92.65
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	92.33
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	91.72
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	91.23
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	91.0
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	90.37
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	90.34
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	90.2
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	90.18
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	90.03
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	89.9
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	89.88
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	89.51
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	89.4
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	89.38
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	89.06
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	88.83
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	88.62
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	87.63
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	87.45
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	87.37
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	86.87
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	86.71
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	86.55
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	85.35
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	84.92
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	84.21
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	83.0
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	82.28
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	81.78
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	80.07

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.71  E-value=2.2e-09  Score=71.98  Aligned_cols=24  Identities=42%  Similarity=0.553  Sum_probs=21.1

Q ss_pred             CCCCCCcEEEEcccHHHHHhhhcC
Q 046761           86 PVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      +..+.|+|||||||+|||+||++|
T Consensus        26 ~~~~pkkV~IIGaG~aGLsaA~~L   49 (370)
T d2iida1          26 ATSNPKHVVIVGAGMAGLSAAYVL   49 (370)
T ss_dssp             CCSSCCEEEEECCBHHHHHHHHHH
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHH
Confidence            456778999999999999999976

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=1.3e-07  Score=67.63  Aligned_cols=25  Identities=24%  Similarity=0.452  Sum_probs=22.1

Q ss_pred             CCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           85 TPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        85 ~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+..++|+|+|||||||||+||++|
T Consensus        38 ~~~~~~k~V~IIGaGPAGL~AA~~l   62 (179)
T d1ps9a3          38 LPAVQKKNLAVVGAGPAGLAFAINA   62 (179)
T ss_dssp             CSCSSCCEEEEECCSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECccHHHHHHHHHH
Confidence            4567889999999999999999875

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.31  E-value=1.5e-07  Score=66.00  Aligned_cols=31  Identities=19%  Similarity=0.115  Sum_probs=24.5

Q ss_pred             cccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           79 EQVTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        79 ~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      +.+........+++|+|||||||||+||.+|
T Consensus        38 ~~p~~~~~~~~~k~VvIIGaGpAGl~aA~~l   68 (233)
T d1djqa3          38 WHPEKFRQTKNKDSVLIVGAGPSGSEAARVL   68 (233)
T ss_dssp             CCSSCCCCCSSCCEEEEECCSHHHHHHHHHH
T ss_pred             CCCCccCcccCCceEEEEcccHHHHHHHHHH
Confidence            3333345567999999999999999999865

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.00  E-value=3.2e-07  Score=65.39  Aligned_cols=35  Identities=17%  Similarity=0.290  Sum_probs=25.7

Q ss_pred             hhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           69 RSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        69 ~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      |.++++++....      ...+.+|+|||||||||+||++|
T Consensus        18 ~~~~~~~~~~~~------~~~e~DViVIGaGpaGL~aA~~L   52 (278)
T d1rp0a1          18 REMTRRYMTDMI------TYAETDVVVVGAGSAGLSAAYEI   52 (278)
T ss_dssp             HHHHHHHHHHHH------HHTEEEEEEECCSHHHHHHHHHH
T ss_pred             HHHHHhhhcccc------cccCCCEEEECCCHHHHHHHHHH
Confidence            456667666533      12456799999999999999864

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.93  E-value=2.4e-06  Score=65.19  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=20.0

Q ss_pred             CCCCCCcEEEEcccHHHHHhhhcC
Q 046761           86 PVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ....+..|+|||||||||+||+.|
T Consensus        28 ~~~~e~DViIVGgGPAGlsaA~~L   51 (380)
T d2gmha1          28 RFAEEADVVIVGAGPAGLSAATRL   51 (380)
T ss_dssp             CCEEECSEEEECCSHHHHHHHHHH
T ss_pred             cccccCCEEEECCCHHHHHHHHHH
Confidence            344567899999999999999864

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.78  E-value=2.1e-06  Score=62.11  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=19.3

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+.+|+|||||||||+||++|
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~   69 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVI   69 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHH
T ss_pred             ccCCCEEEECCCHHHHHHHHHH
Confidence            3567899999999999999875

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.44  E-value=1.7e-05  Score=56.54  Aligned_cols=19  Identities=26%  Similarity=0.368  Sum_probs=16.9

Q ss_pred             CcEEEEcccHHHHHhhhcC
Q 046761           91 PCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        91 kkVAVIGgGpAGLacA~eL  109 (109)
                      -.|+|||+|+|||+||++|
T Consensus        22 ~DVlIIG~G~AGl~AA~~a   40 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEA   40 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHH
T ss_pred             cCEEEECCCHHHHHHHHHH
Confidence            4799999999999999863

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=97.40  E-value=2e-05  Score=56.45  Aligned_cols=20  Identities=40%  Similarity=0.375  Sum_probs=17.6

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      .-+|+|||+|+|||+||++|
T Consensus        23 t~DVvVIG~G~aGl~aA~~l   42 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSA   42 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHH
T ss_pred             cceEEEECcCHHHHHHHHHH
Confidence            34699999999999999875

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=97.27  E-value=3.4e-05  Score=55.56  Aligned_cols=22  Identities=32%  Similarity=0.374  Sum_probs=18.7

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .....|+|||+|+|||+||++|
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~a   38 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAA   38 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHH
T ss_pred             CCccCEEEECcCHHHHHHHHHH
Confidence            3456899999999999999874

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.22  E-value=6.1e-05  Score=52.97  Aligned_cols=25  Identities=28%  Similarity=0.119  Sum_probs=20.8

Q ss_pred             CCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           85 TPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        85 ~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      +..+.+.+|+|||||+||+.||..|
T Consensus        37 ~~~~k~yDvvVIGgG~aG~~aA~~~   61 (261)
T d1mo9a1          37 ENDPREYDAIFIGGGAAGRFGSAYL   61 (261)
T ss_dssp             TTCCSCBSEEEECCSHHHHHHHHHH
T ss_pred             CCCCccCCEEEECCCHHHHHHHHHH
Confidence            4466778899999999999999753

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.02  E-value=0.00013  Score=48.40  Aligned_cols=23  Identities=26%  Similarity=0.445  Sum_probs=19.7

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ....++|+|||||++|+.+|..|
T Consensus        32 ~~~~k~v~VIGgG~iG~E~A~~l   54 (133)
T d1q1ra2          32 LIADNRLVVIGGGYIGLEVAATA   54 (133)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH
T ss_pred             hccCCEEEEECCchHHHHHHHHH
Confidence            45678999999999999999754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.01  E-value=0.00013  Score=47.87  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=19.7

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ....++|+|||||++|+.+|.+|
T Consensus        27 ~~~~~~vvIIGgG~iG~E~A~~l   49 (121)
T d1d7ya2          27 LRPQSRLLIVGGGVIGLELAATA   49 (121)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH
T ss_pred             hhcCCeEEEECcchhHHHHHHHh
Confidence            45678999999999999999764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.99  E-value=0.00013  Score=47.66  Aligned_cols=22  Identities=18%  Similarity=0.241  Sum_probs=19.0

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      +..++|+|||||+.|+.+|..|
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l   49 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAF   49 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHH
T ss_pred             cCCCEEEEECChHHHHHHHHHh
Confidence            4578999999999999998754

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00015  Score=46.78  Aligned_cols=20  Identities=25%  Similarity=0.441  Sum_probs=17.4

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||++|+.+|..|
T Consensus        21 p~~vvIiGgG~ig~E~A~~l   40 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVI   40 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHH
T ss_pred             CCEEEEECCChhhHHHHHHh
Confidence            47999999999999999753

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.90  E-value=0.00019  Score=46.77  Aligned_cols=21  Identities=29%  Similarity=0.529  Sum_probs=18.3

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..++|+|||||+.|+.+|..|
T Consensus        21 ~p~~v~IiGgG~iG~E~A~~l   41 (117)
T d1onfa2          21 ESKKIGIVGSGYIAVELINVI   41 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECCchHHHHHHHHH
Confidence            458999999999999999754

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.89  E-value=0.00016  Score=46.19  Aligned_cols=20  Identities=25%  Similarity=0.471  Sum_probs=17.5

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||+.|+.+|..|
T Consensus        22 p~~v~IiGgG~ig~E~A~~l   41 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAY   41 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHH
T ss_pred             CCeEEEECCCccceeeeeee
Confidence            37999999999999999753

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00037  Score=45.34  Aligned_cols=18  Identities=17%  Similarity=0.289  Sum_probs=16.6

Q ss_pred             CcEEEEcccHHHHHhhhc
Q 046761           91 PCVGIIGGGMARLALSLV  108 (109)
Q Consensus        91 kkVAVIGgGpAGLacA~e  108 (109)
                      ++|+|||||..|+.+|..
T Consensus        23 k~vvIvGgG~iG~E~A~~   40 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGI   40 (125)
T ss_dssp             SEEEEECCSHHHHHHHHH
T ss_pred             CEEEEEcCCccHHHHHHH
Confidence            799999999999999864

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.72  E-value=0.00025  Score=45.33  Aligned_cols=20  Identities=25%  Similarity=0.527  Sum_probs=17.4

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||++|+.+|..|
T Consensus        21 p~~vvIiGgG~~G~E~A~~l   40 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAY   40 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHH
Confidence            37999999999999998753

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.70  E-value=0.00029  Score=44.60  Aligned_cols=21  Identities=14%  Similarity=0.346  Sum_probs=18.2

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+++|+|||||+.|+-.|..|
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l   41 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFF   41 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH
Confidence            468999999999999888653

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.60  E-value=0.00028  Score=45.61  Aligned_cols=22  Identities=36%  Similarity=0.406  Sum_probs=18.7

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...++|+|||||++|+.+|..|
T Consensus        30 ~~~~~vvIiGgG~iG~E~A~~l   51 (122)
T d1xhca2          30 ENSGEAIIIGGGFIGLELAGNL   51 (122)
T ss_dssp             HHHSEEEEEECSHHHHHHHHHH
T ss_pred             hcCCcEEEECCcHHHHHHHHHh
Confidence            3458999999999999999764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.60  E-value=0.00035  Score=44.90  Aligned_cols=19  Identities=21%  Similarity=0.382  Sum_probs=16.8

Q ss_pred             CCcEEEEcccHHHHHhhhc
Q 046761           90 DPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~e  108 (109)
                      +++|+|||||+.|+.+|..
T Consensus        20 p~~v~ivGgG~ig~E~A~~   38 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGI   38 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHH
Confidence            4799999999999999853

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.00041  Score=45.31  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=20.5

Q ss_pred             CCCCCCCcEEEEcccHHHHHhhhc
Q 046761           85 TPVSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        85 ~~~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      .....+++|+|||||..|+-||..
T Consensus        24 ~~~~~gkrVvVIGgG~~g~d~a~~   47 (162)
T d1ps9a2          24 DKAPVGNKVAIIGCGGIGFDTAMY   47 (162)
T ss_dssp             SCCCCCSEEEEECCHHHHHHHHHH
T ss_pred             CccccCCceEEEcCchhHHHHHHH
Confidence            345678999999999999999964

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.52  E-value=0.00041  Score=44.12  Aligned_cols=18  Identities=17%  Similarity=0.266  Sum_probs=16.2

Q ss_pred             CCcEEEEcccHHHHHhhh
Q 046761           90 DPCVGIIGGGMARLALSL  107 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~  107 (109)
                      +++|+|||||++|+.+|.
T Consensus        18 p~~v~IiGgG~ig~E~A~   35 (117)
T d1feca2          18 PKRALCVGGGYISIEFAG   35 (117)
T ss_dssp             CSEEEEECSSHHHHHHHH
T ss_pred             CCeEEEECCChHHHHHHH
Confidence            479999999999999885

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00049  Score=45.25  Aligned_cols=22  Identities=32%  Similarity=0.477  Sum_probs=18.1

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...++|+|||||++|+-+|.+|
T Consensus        35 ~~~k~i~IvGgG~~G~E~A~~l   56 (137)
T d1m6ia2          35 REVKSITIIGGGFLGSELACAL   56 (137)
T ss_dssp             HHCSEEEEECCSHHHHHHHHHH
T ss_pred             hcCCEEEEECCCHHHHHHHHHH
Confidence            3467999999999998887653

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=96.42  E-value=0.00064  Score=45.04  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=20.6

Q ss_pred             CCCCCCcEEEEcccHHHHHhhhcC
Q 046761           86 PVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..-++|+|+|||+|-.|.-+|.+|
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~   51 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQI   51 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHH
Confidence            346899999999999999988764

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.26  E-value=0.00074  Score=44.06  Aligned_cols=19  Identities=11%  Similarity=0.051  Sum_probs=16.8

Q ss_pred             CCcEEEEcccHHHHHhhhc
Q 046761           90 DPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~e  108 (109)
                      +++|+|||||+.|+.+|..
T Consensus        20 P~~vvIIGgG~iG~E~A~~   38 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGF   38 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHH
T ss_pred             CCeEEEECCCccHHHHHHH
Confidence            3689999999999999864

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.26  E-value=0.00079  Score=42.76  Aligned_cols=23  Identities=22%  Similarity=0.222  Sum_probs=19.8

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .-.+|+|+|||+|.+|+-+|.+|
T Consensus        29 ~f~gK~VlVVG~g~Sa~dia~~l   51 (107)
T d2gv8a2          29 LFVGESVLVVGGASSANDLVRHL   51 (107)
T ss_dssp             GGTTCCEEEECSSHHHHHHHHHH
T ss_pred             hcCCCeEEEECCCCCHHHHHHHH
Confidence            34789999999999999988764

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.00094  Score=43.42  Aligned_cols=20  Identities=35%  Similarity=0.571  Sum_probs=17.3

Q ss_pred             CCcEEEEcccHHHHHhhhcC
Q 046761           90 DPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~eL  109 (109)
                      +++|+|||||+.|+.+|..|
T Consensus        23 p~~~vIiG~G~ig~E~A~~l   42 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVY   42 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHH
T ss_pred             CCeEEEECCCchHHHHHHHH
Confidence            37999999999999998653

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=95.89  E-value=0.00057  Score=50.49  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=18.9

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      +.....|+|||||.||+..|.+|
T Consensus        23 ~~~~YD~IIVGsG~aG~vlA~rL   45 (351)
T d1ju2a1          23 LEGSYDYVIVGGGTSGCPLAATL   45 (351)
T ss_dssp             SEEEEEEEEECCSTTHHHHHHHH
T ss_pred             ccCCccEEEECccHHHHHHHHHh
Confidence            34456999999999999999765

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.80  E-value=0.0022  Score=43.64  Aligned_cols=22  Identities=18%  Similarity=0.179  Sum_probs=18.6

Q ss_pred             CCCCCcEEEEcccHHHHHhhhc
Q 046761           87 VSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      +..+++|+|||||-+++-||..
T Consensus        42 p~~~~kVvVIGGGdtA~D~A~~   63 (153)
T d1gtea3          42 PSIRGAVIVLGAGDTAFDCATS   63 (153)
T ss_dssp             CCCCSEEEEECSSHHHHHHHHH
T ss_pred             ccCCCEEEEECCChhHHHHHHH
Confidence            3457799999999999999965

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.71  E-value=0.0018  Score=41.72  Aligned_cols=20  Identities=35%  Similarity=0.544  Sum_probs=17.3

Q ss_pred             CCCcEEEEcccHHHHHhhhc
Q 046761           89 SDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~e  108 (109)
                      -+++|+|||||..|+-+|..
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~   40 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSV   40 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHH
T ss_pred             CCCeEEEECCChHHHHHHHH
Confidence            34889999999999999864

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.32  E-value=0.0023  Score=41.45  Aligned_cols=19  Identities=26%  Similarity=0.382  Sum_probs=17.0

Q ss_pred             CCcEEEEcccHHHHHhhhc
Q 046761           90 DPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~e  108 (109)
                      +++|+|||||..||-+|..
T Consensus        25 p~~~viiG~G~iglE~A~~   43 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSV   43 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHH
T ss_pred             CCeEEEEccchHHHHHHHH
Confidence            4799999999999999865

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.32  E-value=0.0029  Score=41.55  Aligned_cols=19  Identities=37%  Similarity=0.529  Sum_probs=16.9

Q ss_pred             CCcEEEEcccHHHHHhhhc
Q 046761           90 DPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~e  108 (109)
                      +++|+|||||..|+-+|..
T Consensus        26 p~~vvIiGgG~IG~E~A~~   44 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTV   44 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHH
Confidence            4799999999999999864

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=94.81  E-value=0.0042  Score=46.31  Aligned_cols=21  Identities=29%  Similarity=0.354  Sum_probs=18.4

Q ss_pred             CCCcEEEEcccHHHHHhhhcC
Q 046761           89 SDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~eL  109 (109)
                      +...++|||||.||+.+|.+|
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rL   43 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKL   43 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHH
T ss_pred             CeeeEEEECcCHHHHHHHHHH
Confidence            347999999999999999875

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.46  E-value=0.012  Score=40.95  Aligned_cols=21  Identities=24%  Similarity=0.234  Sum_probs=18.3

Q ss_pred             CCCCCcEEEEcccHHHHHhhh
Q 046761           87 VSSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~  107 (109)
                      ...+++|+|||+|-.+|=||-
T Consensus        36 ~~~gk~VvVIGgGNvAlD~AR   56 (216)
T d1lqta1          36 DLSGARAVVIGNGNVALDVAR   56 (216)
T ss_dssp             CCCSSEEEEECCSHHHHHHHH
T ss_pred             cccCceEEEECCCchhHhhhh
Confidence            346899999999999999985

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=94.03  E-value=0.0092  Score=39.11  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=19.6

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .=.+|+|+|||||.+.+-.|.+|
T Consensus        27 ~~~gk~V~VvGgG~sA~~~A~~L   49 (126)
T d1fl2a2          27 LFKGKRVAVIGGGNSGVEAAIDL   49 (126)
T ss_dssp             GGBTCEEEEECCSHHHHHHHHHH
T ss_pred             hcCCceEEEEeCCHHHHHHHHhh
Confidence            44689999999999999888765

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.60  E-value=0.013  Score=38.19  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=19.1

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      =++|+|+|||||-+.+-.|..|
T Consensus        25 ~~~k~V~VvGgGdsA~e~A~~L   46 (126)
T d1trba2          25 YRNQKVAVIGGGNTAVEEALYL   46 (126)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHH
T ss_pred             hCCCEEEEECCCHHHHHHHHHH
Confidence            4789999999999999888764

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.07  E-value=0.03  Score=39.21  Aligned_cols=22  Identities=23%  Similarity=0.205  Sum_probs=18.9

Q ss_pred             CCCCCcEEEEcccHHHHHhhhc
Q 046761           87 VSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      ...+++|+|||+|-.+|=||..
T Consensus        36 ~~~gk~VvVIGgGNVAlD~aR~   57 (225)
T d1cjca1          36 DLSCDTAVILGQGNVALDVARI   57 (225)
T ss_dssp             CTTSSEEEEESCSHHHHHHHHH
T ss_pred             cccCceEEEECCchhHHHHHHH
Confidence            3458999999999999999854

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=92.76  E-value=0.031  Score=38.69  Aligned_cols=23  Identities=13%  Similarity=0.342  Sum_probs=19.2

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .-..+||+|||+|..|-++|+.|
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l   39 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISI   39 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHH
T ss_pred             cCCCCeEEEECCCHHHHHHHHHH
Confidence            34457999999999999999854

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.65  E-value=0.022  Score=37.83  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=19.7

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .=++|+|+|||||-+.+--|++|
T Consensus        31 ~frgk~V~VvGgGdsA~e~A~~L   53 (130)
T d1vdca2          31 IFRNKPLAVIGGGDSAMEEANFL   53 (130)
T ss_dssp             GGTTSEEEEECCSHHHHHHHHHH
T ss_pred             HhCCCEEEEEcCchHHHHHHHHH
Confidence            34799999999999999888765

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=92.33  E-value=0.026  Score=37.71  Aligned_cols=22  Identities=27%  Similarity=0.273  Sum_probs=19.4

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||+|=|+.++++.|
T Consensus        16 ~~~k~vlIlGaGGaarai~~al   37 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPL   37 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH
T ss_pred             CCCCEEEEECCcHHHHHHHHHh
Confidence            4789999999999999998764

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=91.72  E-value=0.034  Score=37.52  Aligned_cols=22  Identities=18%  Similarity=0.166  Sum_probs=19.0

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||+|-+|.++++.|
T Consensus        16 l~~k~vlIlGaGGaarai~~al   37 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQG   37 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHH
Confidence            4779999999999999988754

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.23  E-value=0.05  Score=35.64  Aligned_cols=21  Identities=24%  Similarity=0.208  Sum_probs=17.7

Q ss_pred             CCCCCcEEEEcccHHHHHhhh
Q 046761           87 VSSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~  107 (109)
                      +..+.+|+|+|+|+.|+.++.
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~   44 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLL   44 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHH
T ss_pred             CCCCCEEEEECCCccHHHHHH
Confidence            456678999999999998875

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.00  E-value=0.06  Score=37.08  Aligned_cols=22  Identities=18%  Similarity=0.267  Sum_probs=18.3

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      .+..||+|||+|-.|-++|+.|
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l   38 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISI   38 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCHHHHHHHHHH
Confidence            3446899999999999999853

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=90.37  E-value=0.091  Score=35.27  Aligned_cols=22  Identities=23%  Similarity=0.184  Sum_probs=18.5

Q ss_pred             CCCCCCcEEEEcccHHHHHhhh
Q 046761           86 PVSSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~  107 (109)
                      .+..+.+|+|+|+|+.|+.++.
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q   45 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIA   45 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCcchhhhhh
Confidence            3566789999999999998864

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=90.34  E-value=0.091  Score=35.45  Aligned_cols=22  Identities=18%  Similarity=0.323  Sum_probs=19.0

Q ss_pred             CCCCCCcEEEEcccHHHHHhhh
Q 046761           86 PVSSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~  107 (109)
                      .+..+.+|+|+|+|+.||.++.
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~   46 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAII   46 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHH
T ss_pred             CCCCCCEEEEECCChHHHHHHH
Confidence            4667789999999999999875

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.20  E-value=0.098  Score=33.79  Aligned_cols=21  Identities=19%  Similarity=0.045  Sum_probs=17.8

Q ss_pred             CCCCCcEEEEcccHHHHHhhh
Q 046761           87 VSSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~  107 (109)
                      +..+.+|+|+|+|+.|+.++.
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~   45 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQ   45 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHH
T ss_pred             CCCCCEEEEeeccccHHHHHH
Confidence            456778999999999998764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=90.18  E-value=0.072  Score=34.48  Aligned_cols=21  Identities=33%  Similarity=0.347  Sum_probs=17.8

Q ss_pred             CCCCCcEEEEcccHHHHHhhh
Q 046761           87 VSSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~  107 (109)
                      +..+.+|+|+|+|+.|+.++.
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~   44 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVL   44 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHH
T ss_pred             CCCCCEEEEEcccccchhhHh
Confidence            456778999999999999875

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.03  E-value=0.061  Score=35.94  Aligned_cols=22  Identities=32%  Similarity=0.360  Sum_probs=18.9

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      -.+|+|.|||+|=++.++++.|
T Consensus        16 ~~~k~vlIlGaGG~arai~~aL   37 (177)
T d1nvta1          16 VKDKNIVIYGAGGAARAVAFEL   37 (177)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHH
Confidence            3789999999999999888754

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=89.90  E-value=0.11  Score=34.00  Aligned_cols=22  Identities=18%  Similarity=0.089  Sum_probs=18.4

Q ss_pred             CCCCCCcEEEEcccHHHHHhhh
Q 046761           86 PVSSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~  107 (109)
                      .+..+.+|+|+|+|+.|+.++.
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~q   48 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIK   48 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHH
T ss_pred             CCCCCCEEEEeccchHHHHHHH
Confidence            3567889999999999998753

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.88  E-value=0.11  Score=34.41  Aligned_cols=22  Identities=23%  Similarity=0.262  Sum_probs=18.6

Q ss_pred             CCCCCCcEEEEcccHHHHHhhh
Q 046761           86 PVSSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~  107 (109)
                      .+..+.+|+|+|+|+.|+.++.
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~   46 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALL   46 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCHHHhhhhh
Confidence            3567889999999999998874

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.51  E-value=0.019  Score=39.27  Aligned_cols=22  Identities=5%  Similarity=-0.026  Sum_probs=19.3

Q ss_pred             CCCCcEEEEcccHHHHHhhhcC
Q 046761           88 SSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ..+++|+|||||..|+-+|.+|
T Consensus       178 ~~~~~vvViGgG~~g~e~A~~l  199 (233)
T d1djqa3         178 DAEAPRLIADATFTGHRVAREI  199 (233)
T ss_dssp             GGTSCCCHHHHHHHHHHHHHTT
T ss_pred             ccCCceeEecCchHHHHHHHHH
Confidence            3578999999999999999875

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=89.40  E-value=0.11  Score=34.21  Aligned_cols=21  Identities=24%  Similarity=0.093  Sum_probs=17.8

Q ss_pred             CCCCCcEEEEcccHHHHHhhh
Q 046761           87 VSSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~  107 (109)
                      +..+.+|+|+|+|+.|+.+..
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~   46 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVV   46 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHH
T ss_pred             CCCCCEEEEECCCccchhhee
Confidence            456889999999999998764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.38  E-value=0.12  Score=33.84  Aligned_cols=22  Identities=27%  Similarity=0.226  Sum_probs=18.4

Q ss_pred             CCCCCCcEEEEcccHHHHHhhh
Q 046761           86 PVSSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~  107 (109)
                      .+..+.+|+|+|+|+.|+.++.
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q   45 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTL   45 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHH
T ss_pred             CcCCCCEEEEECCCCcchhHHH
Confidence            3567889999999999998764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.06  E-value=0.13  Score=35.26  Aligned_cols=22  Identities=27%  Similarity=0.302  Sum_probs=18.8

Q ss_pred             CCCCCCcEEEEcccHHHHHhhh
Q 046761           86 PVSSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~  107 (109)
                      .+..+.+|+|+|+|+.||.++.
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~   43 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAA   43 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHH
T ss_pred             CCCCCCEEEEECcCHHHHHHHH
Confidence            4677889999999999988764

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=88.83  E-value=0.08  Score=35.73  Aligned_cols=23  Identities=30%  Similarity=0.367  Sum_probs=19.6

Q ss_pred             CCCCCcEEEEcccHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      ...+++|.|||+|=|+.++++.|
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL   37 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPL   37 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHH
Confidence            35789999999999999988754

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=88.62  E-value=0.096  Score=37.68  Aligned_cols=18  Identities=28%  Similarity=0.243  Sum_probs=15.9

Q ss_pred             CCcEEEEcccHHHHHhhh
Q 046761           90 DPCVGIIGGGMARLALSL  107 (109)
Q Consensus        90 ~kkVAVIGgGpAGLacA~  107 (109)
                      +-+|+|||+|-||+.+|.
T Consensus        29 pa~VvViGaGvaG~~Aa~   46 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIA   46 (183)
T ss_dssp             CCEEEEECCSHHHHHHHH
T ss_pred             CcEEEEEcCcHHHHHHHH
Confidence            458999999999999875

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.63  E-value=0.14  Score=36.04  Aligned_cols=36  Identities=14%  Similarity=0.087  Sum_probs=29.5

Q ss_pred             chhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhc
Q 046761           68 RRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        68 r~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~e  108 (109)
                      |||++|.++..-.+     .-.+|.|+|||=|..|..+|..
T Consensus         7 g~S~~~~~~r~t~~-----~l~Gk~v~V~GyG~iG~g~A~~   42 (163)
T d1li4a1           7 RESLIDGIKRATDV-----MIAGKVAVVAGYGDVGKGCAQA   42 (163)
T ss_dssp             HHHHHHHHHHHHCC-----CCTTCEEEEECCSHHHHHHHHH
T ss_pred             hhhHHHHHHHHhCc-----eecCCEEEEeccccccHHHHHH
Confidence            78888888776444     4478999999999999999965

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.45  E-value=0.14  Score=32.59  Aligned_cols=21  Identities=19%  Similarity=0.063  Sum_probs=17.7

Q ss_pred             CCCCCcEEEEcccHHHHHhhh
Q 046761           87 VSSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~  107 (109)
                      +..+.+|+|+|+|+.|+.++.
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~   45 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQ   45 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHH
T ss_pred             CCCCCEEEEeecccchhhhhH
Confidence            456789999999999998764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=87.37  E-value=0.16  Score=36.08  Aligned_cols=19  Identities=26%  Similarity=0.333  Sum_probs=16.7

Q ss_pred             CCCcEEEEcccHHHHHhhh
Q 046761           89 SDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        89 ~~kkVAVIGgGpAGLacA~  107 (109)
                      .+-+|+|||+|-||+.++.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~   49 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAK   49 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHH
T ss_pred             CCcEEEEECCChHHHHHHH
Confidence            5679999999999999875

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=86.87  E-value=0.23  Score=32.14  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=18.6

Q ss_pred             CCCCCCcEEEEcccHHHHHhhh
Q 046761           86 PVSSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~  107 (109)
                      .+..+.+|+|+|+|+.|+.++.
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~   46 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVM   46 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHH
T ss_pred             CCCCCCEEEEEecCCccchHHH
Confidence            4677888999999999998764

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=86.71  E-value=0.13  Score=34.54  Aligned_cols=21  Identities=19%  Similarity=0.237  Sum_probs=18.0

Q ss_pred             CCCCcEEEEcccHHHHHhhhc
Q 046761           88 SSDPCVGIIGGGMARLALSLV  108 (109)
Q Consensus        88 ~~~kkVAVIGgGpAGLacA~e  108 (109)
                      ..+++|+|||+|-.|-.+|..
T Consensus        22 l~~~~ilviGaG~~g~~v~~~   42 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKS   42 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHH
T ss_pred             cccCeEEEECCCHHHHHHHHH
Confidence            478999999999999888754

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=86.55  E-value=0.17  Score=35.89  Aligned_cols=37  Identities=19%  Similarity=0.096  Sum_probs=30.6

Q ss_pred             chhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761           68 RRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL  109 (109)
Q Consensus        68 r~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL  109 (109)
                      |||++|.++..-.+     +-.+|+|+|+|=|..|..||..|
T Consensus         6 g~S~~d~i~r~t~~-----~laGk~vvV~GYG~vGrG~A~~~   42 (163)
T d1v8ba1           6 RHSLPDGLMRATDF-----LISGKIVVICGYGDVGKGCASSM   42 (163)
T ss_dssp             HHHHHHHHHHHHCC-----CCTTSEEEEECCSHHHHHHHHHH
T ss_pred             chhHHHHHHHHhCc-----eecCCEEEEecccccchhHHHHH
Confidence            78998888876444     45899999999999999999753

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=85.35  E-value=0.21  Score=33.27  Aligned_cols=22  Identities=14%  Similarity=0.238  Sum_probs=18.7

Q ss_pred             CCCCCCcEEEEcccHHHHHhhh
Q 046761           86 PVSSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~  107 (109)
                      .+..+.+|+|+|+|+.||.++.
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~   45 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIV   45 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchhHHHHH
Confidence            4677889999999999998764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=84.92  E-value=0.23  Score=32.33  Aligned_cols=22  Identities=18%  Similarity=0.326  Sum_probs=18.9

Q ss_pred             CCCCCCcEEEEcccHHHHHhhh
Q 046761           86 PVSSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~  107 (109)
                      .+..+-.|+|+|+|..|+.++.
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~   46 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIM   46 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCcHHHHHH
Confidence            4677888999999999998875

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.21  E-value=0.33  Score=31.59  Aligned_cols=21  Identities=19%  Similarity=0.143  Sum_probs=17.6

Q ss_pred             CCCCCcEEEEcccHHHHHhhh
Q 046761           87 VSSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        87 ~~~~kkVAVIGgGpAGLacA~  107 (109)
                      +..+..|+|+|+|+.|+.++.
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~   50 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQ   50 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHH
T ss_pred             cCCCCEEEEeCCChHHHHHHH
Confidence            456778999999999998764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=83.00  E-value=0.3  Score=32.59  Aligned_cols=22  Identities=18%  Similarity=0.250  Sum_probs=18.4

Q ss_pred             CCCCCCcEEEEcccHHHHHhhh
Q 046761           86 PVSSDPCVGIIGGGMARLALSL  107 (109)
Q Consensus        86 ~~~~~kkVAVIGgGpAGLacA~  107 (109)
                      .+..+..|+|+|+|+.||.+..
T Consensus        26 ~~~~g~tVlI~G~GgvGl~ai~   47 (176)
T d1d1ta2          26 KVKPGSTCVVFGLGGVGLSVIM   47 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchhHHHHH
Confidence            3667888999999999998764

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=82.28  E-value=0.28  Score=31.33  Aligned_cols=23  Identities=17%  Similarity=-0.005  Sum_probs=17.5

Q ss_pred             CCCCCcEEEE--cccHHHHHhhhcC
Q 046761           87 VSSDPCVGII--GGGMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVI--GgGpAGLacA~eL  109 (109)
                      ...++.|+||  |||..|+.+|..|
T Consensus        36 ~~~~~~vvi~d~ggg~ig~e~A~~l   60 (156)
T d1djqa2          36 KKIGKRVVILNADTYFMAPSLAEKL   60 (156)
T ss_dssp             SCCCSEEEEEECCCSSHHHHHHHHH
T ss_pred             cccCCceEEEecCCChHHHHHHHHH
Confidence            3446677776  9999999999653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=81.78  E-value=0.37  Score=31.03  Aligned_cols=21  Identities=14%  Similarity=0.216  Sum_probs=17.1

Q ss_pred             CCCCCcEEEEc-ccHHHHHhhh
Q 046761           87 VSSDPCVGIIG-GGMARLALSL  107 (109)
Q Consensus        87 ~~~~kkVAVIG-gGpAGLacA~  107 (109)
                      +..+.+|+|+| +|+.|+.++.
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~   46 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQ   46 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHH
T ss_pred             CCCCCEEEEEeccccceeeeee
Confidence            55678899999 4999998764

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=80.07  E-value=0.33  Score=33.37  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=18.4

Q ss_pred             CCCCCcEEEEcc-cHHHHHhhhcC
Q 046761           87 VSSDPCVGIIGG-GMARLALSLVL  109 (109)
Q Consensus        87 ~~~~kkVAVIGg-GpAGLacA~eL  109 (109)
                      ..+.-||+|||| |..|-++|+.|
T Consensus        21 ~k~~~kV~I~GA~G~Ig~~l~~~L   44 (175)
T d7mdha1          21 WKKLVNIAVSGAAGMISNHLLFKL   44 (175)
T ss_dssp             CCCCEEEEEETTTSHHHHHHHHHH
T ss_pred             cCCCcEEEEECCCcHHHHHHHHHH
Confidence            445568999996 99999998753