Citrus Sinensis ID: 046779

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
MFISQRFFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYLSIIFNKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSFNDLVSLWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPSFGVEATELYPDVNYTTVDEYLNQFI
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccEEEHHHHccccccccccccccccccEEEccccccccccEEEEccccccccHHHHHHHHHHHHccccccEEccHHHHHHHHHHcccccccccccEEEEEEEcccccccccccccccccccccccccccHHHHHHHHc
ccEEEcccccHccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEHHHHHHHHHHHHEccHccHcEEEEEEccccccccEEEEEccccccccHHHHHHHHHHHHcccccEEEccHHHHHHHHHcccccccEEEEEEEEEEEEcccEEEEEccccccEHHEccccccEccHHHHHHHcc
mfisqrffpsefgndvdRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYLSIIFnkeddiginsikavddprtlnkilyirprcniysfnDLVSLWEEKIGKALDRVYVTEEQLLKNIqeasyplnmilpighsayvlgdqtnfeiepsfgveatelypdvnytTVDEYLNQFI
mfisqrffpsefgndvdrVHAVELartsfatkakiRRAVEAERIPYTYVASNFFAGLYLSIIFNKEDDIGInsikavddprtlNKILYIRPRCNIYSFNDLVSLWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPSFGVEAtelypdvnytTVDEYLNQFI
MFISQRFFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYLSIIFNKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSFNDLVSLWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPSFGVEATELYPDVNYTTVDEYLNQFI
******FFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYLSIIFNKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSFNDLVSLWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPSFGVEATELYPDVNYTTVDEYLN***
MFISQRFFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYLSIIFNKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSFNDLVSLWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPSFGVEATELYPDVNYTTVDEYLNQFI
MFISQRFFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYLSIIFNKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSFNDLVSLWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPSFGVEATELYPDVNYTTVDEYLNQFI
MFISQRFFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYLSIIFNKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSFNDLVSLWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPSFGVEATELYPDVNYTTVDEYLNQFI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFISQRFFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYLSIIFNKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSFNDLVSLWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPSFGVEATELYPDVNYTTVDEYLNQFI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query183 2.2.26 [Sep-21-2011]
E1U332308 Isoflavone reductase-like N/A no 0.978 0.581 0.591 1e-66
P52578308 Isoflavone reductase homo N/A no 0.978 0.581 0.610 7e-66
P52577310 Isoflavone reductase homo no no 0.967 0.570 0.534 8e-57
P52580309 Isoflavone reductase homo N/A no 0.978 0.579 0.512 2e-53
P52579310 Isoflavone reductase homo N/A no 0.978 0.577 0.507 1e-52
P52575318 Isoflavone reductase OS=M N/A no 0.972 0.559 0.453 1e-44
P52576318 Isoflavone reductase OS=P N/A no 0.972 0.559 0.453 1e-43
Q00016318 Isoflavone reductase OS=C N/A no 0.972 0.559 0.453 2e-42
Q15GI3323 Isoeugenol synthase 1 OS= N/A no 0.961 0.544 0.380 2e-34
P52581312 Isoflavone reductase homo N/A no 0.961 0.564 0.364 2e-31
>sp|E1U332|ALL12_OLEEU Isoflavone reductase-like protein OS=Olea europaea PE=1 SV=1 Back     alignment and function desciption
 Score =  252 bits (643), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 120/203 (59%), Positives = 155/203 (76%), Gaps = 24/203 (11%)

Query: 5   QRFFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYL----- 59
           +RFFPS+FG DVDR HAVE A++SF  K++IRRA+EAE IPYT+V++N+FAG  L     
Sbjct: 106 KRFFPSDFGTDVDRCHAVEPAKSSFEIKSQIRRAIEAEGIPYTFVSANYFAGYSLPTLVQ 165

Query: 60  -------------------SIIFNKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSFND 100
                                +FN+E+DIG  +IKAVDD RTLNKILYI+P  NIYSFN+
Sbjct: 166 PEVTAPPRDKVIILGDGNAKAVFNEENDIGTYTIKAVDDARTLNKILYIKPPKNIYSFNE 225

Query: 101 LVSLWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPSFG 160
           LV+LWE+KIGK L+++YV EEQ+LK IQE+ +P+N+++ I HSA+V GD TNF+IEPSFG
Sbjct: 226 LVALWEKKIGKTLEKIYVPEEQVLKQIQESPFPINIVMAINHSAFVKGDLTNFKIEPSFG 285

Query: 161 VEATELYPDVNYTTVDEYLNQFI 183
           VEA+ELYPDV YTTV+EYL+QF+
Sbjct: 286 VEASELYPDVKYTTVEEYLDQFV 308

Olea europaea (taxid: 4146)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: -
>sp|P52578|IFRH_SOLTU Isoflavone reductase homolog OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|P52577|IFRH_ARATH Isoflavone reductase homolog P3 OS=Arabidopsis thaliana GN=At1g75280 PE=1 SV=1 Back     alignment and function description
>sp|P52580|IFRH_MAIZE Isoflavone reductase homolog IRL OS=Zea mays GN=IRL PE=2 SV=1 Back     alignment and function description
>sp|P52579|IFRH_TOBAC Isoflavone reductase homolog A622 OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P52575|IFR_MEDSA Isoflavone reductase OS=Medicago sativa GN=IFR PE=1 SV=1 Back     alignment and function description
>sp|P52576|IFR_PEA Isoflavone reductase OS=Pisum sativum GN=IFR PE=2 SV=1 Back     alignment and function description
>sp|Q00016|IFR_CICAR Isoflavone reductase OS=Cicer arietinum GN=IFR PE=1 SV=1 Back     alignment and function description
>sp|Q15GI3|IGS1_PETHY Isoeugenol synthase 1 OS=Petunia hybrida GN=IGS1 PE=1 SV=1 Back     alignment and function description
>sp|P52581|IFRH_LUPAL Isoflavone reductase homolog OS=Lupinus albus PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query183
76559894 306 TPA: isoflavone reductase-like protein 5 0.978 0.584 0.694 8e-76
225428436 306 PREDICTED: isoflavone reductase homolog 0.978 0.584 0.684 6e-75
3243234 308 isoflavone reductase related protein [Py 0.978 0.581 0.679 3e-73
118486357 306 unknown [Populus trichocarpa] 0.978 0.584 0.665 2e-72
224105373 306 phenylcoumaran benzylic ether reductase 0.978 0.584 0.665 2e-72
225428432 306 PREDICTED: isoflavone reductase homolog 0.972 0.581 0.653 1e-71
76559896 308 TPA: isoflavone reductase-like protein 6 0.978 0.581 0.650 2e-71
449438299 308 PREDICTED: isoflavone reductase homolog 0.978 0.581 0.660 4e-71
225428442 308 PREDICTED: isoflavone reductase homolog 0.978 0.581 0.640 1e-70
225428438 308 PREDICTED: isoflavone reductase homolog 0.978 0.581 0.650 2e-70
>gi|76559894|tpe|CAI56334.1| TPA: isoflavone reductase-like protein 5 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  288 bits (736), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 141/203 (69%), Positives = 159/203 (78%), Gaps = 24/203 (11%)

Query: 5   QRFFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYL----- 59
           +RFFPSEFGNDVDRVHAVE A+T+FATKA+IRR +EAE IPYTYV+SNFFAG +L     
Sbjct: 104 KRFFPSEFGNDVDRVHAVEPAKTAFATKAQIRRTIEAEGIPYTYVSSNFFAGYFLPSLSQ 163

Query: 60  -------------------SIIFNKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSFND 100
                                +FNKEDDIG  +IKAVDDPRTLNKILYIRP  N YSFND
Sbjct: 164 PGATTPPRDKVIILGDGNPKAVFNKEDDIGTYTIKAVDDPRTLNKILYIRPPQNTYSFND 223

Query: 101 LVSLWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPSFG 160
           LVSLWE+KIGK L+++YV EEQ+LKNIQEAS PLN+IL I HS ++ GD TNFEIEPSFG
Sbjct: 224 LVSLWEKKIGKTLEKIYVPEEQVLKNIQEASVPLNVILSISHSVFIKGDHTNFEIEPSFG 283

Query: 161 VEATELYPDVNYTTVDEYLNQFI 183
           VEATELYPDV YTTVDEYLNQF+
Sbjct: 284 VEATELYPDVKYTTVDEYLNQFV 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225428436|ref|XP_002283953.1| PREDICTED: isoflavone reductase homolog [Vitis vinifera] gi|297744403|emb|CBI37665.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|3243234|gb|AAC24001.1| isoflavone reductase related protein [Pyrus communis] Back     alignment and taxonomy information
>gi|118486357|gb|ABK95019.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224105373|ref|XP_002313788.1| phenylcoumaran benzylic ether reductase 3 [Populus trichocarpa] gi|222850196|gb|EEE87743.1| phenylcoumaran benzylic ether reductase 3 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225428432|ref|XP_002283921.1| PREDICTED: isoflavone reductase homolog [Vitis vinifera] gi|297744407|emb|CBI37669.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|76559896|tpe|CAI56335.1| TPA: isoflavone reductase-like protein 6 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449438299|ref|XP_004136926.1| PREDICTED: isoflavone reductase homolog [Cucumis sativus] gi|449478781|ref|XP_004155417.1| PREDICTED: isoflavone reductase homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|225428442|ref|XP_002283978.1| PREDICTED: isoflavone reductase homolog [Vitis vinifera] gi|297744400|emb|CBI37662.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225428438|ref|XP_002284006.1| PREDICTED: isoflavone reductase homolog [Vitis vinifera] gi|297744402|emb|CBI37664.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query183
TAIR|locus:2136383308 AT4G39230 [Arabidopsis thalian 0.666 0.396 0.713 6.1e-64
TAIR|locus:2025197318 AT1G75290 [Arabidopsis thalian 0.661 0.380 0.595 8.8e-55
TAIR|locus:2025192310 AT1G75280 [Arabidopsis thalian 0.655 0.387 0.628 3.7e-54
TAIR|locus:2016482310 AT1G19540 [Arabidopsis thalian 0.666 0.393 0.598 1.8e-52
TAIR|locus:2025167322 AT1G75300 [Arabidopsis thalian 0.650 0.369 0.557 2.9e-50
TAIR|locus:2139494306 AT4G34540 [Arabidopsis thalian 0.666 0.398 0.508 4.5e-38
TAIR|locus:2031730317 PRR1 "pinoresinol reductase 1" 0.710 0.410 0.340 5.9e-29
TAIR|locus:2119455317 PRR2 "pinoresinol reductase 2" 0.661 0.381 0.370 2.5e-17
UNIPROTKB|G4MWE1332 MGG_08352 "Isoflavone reductas 0.628 0.346 0.305 4.7e-05
TAIR|locus:2136383 AT4G39230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 457 (165.9 bits), Expect = 6.1e-64, Sum P(2) = 6.1e-64
 Identities = 87/122 (71%), Positives = 101/122 (82%)

Query:    62 IFNKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSFNDLVSLWEEKIGKALDRVYVTEE 121
             +FNKE+DIG  +I AVDDPRTLNKILYIRP  N YSFNDLVSLWE KIGK L+R+YV EE
Sbjct:   187 VFNKEEDIGTYTINAVDDPRTLNKILYIRPPMNTYSFNDLVSLWENKIGKTLERIYVPEE 246

Query:   122 QLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPSFGVEATELYPDVNYTTVDEYLNQ 181
             QLLK I E+S PLN++L + H  +V G  T+FEIEPSFGVEA+ELYPDV YTTVDE LNQ
Sbjct:   247 QLLKQIIESSPPLNVMLSLCHCVFVKGGHTSFEIEPSFGVEASELYPDVKYTTVDEILNQ 306

Query:   182 FI 183
             ++
Sbjct:   307 YV 308
GO:0000166 "nucleotide binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0032442 "phenylcoumaran benzylic ether reductase activity" evidence=ISS
GO:0046686 "response to cadmium ion" evidence=IEP
TAIR|locus:2025197 AT1G75290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025192 AT1G75280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016482 AT1G19540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025167 AT1G75300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139494 AT4G34540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031730 PRR1 "pinoresinol reductase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119455 PRR2 "pinoresinol reductase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4MWE1 MGG_08352 "Isoflavone reductase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.3.1.45LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query183
pfam05368232 pfam05368, NmrA, NmrA-like family 9e-36
cd05259282 cd05259, PCBER_SDR_a, phenylcoumaran benzylic ethe 3e-29
cd05226176 cd05226, SDR_e_a, Extended (e) and atypical (a) SD 0.001
>gnl|CDD|191263 pfam05368, NmrA, NmrA-like family Back     alignment and domain information 
 Score =  124 bits (313), Expect = 9e-36
 Identities = 55/132 (41%), Positives = 71/132 (53%), Gaps = 26/132 (19%)

Query: 5   QRFFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYLS---- 60
           + F PSEFGNDVDR + VE A   F +KA++ R + A  IPYT+V + FF G +LS    
Sbjct: 96  KHFIPSEFGNDVDRSNGVEPAVPHFDSKAEVERYIRALGIPYTFVYAGFFMGNFLSNLAP 155

Query: 61  ---------------------IIFNKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSFN 99
                                +  + E+DIG   IK +DDPR L K  YIRP  NI S N
Sbjct: 156 PGDLAPPRDKVTLLGPGNPKAVPLDDEEDIGTYVIKILDDPRKL-KGKYIRPPGNILSGN 214

Query: 100 DLVSLWEEKIGK 111
           ++  LW +KIGK
Sbjct: 215 EIAELWSKKIGK 226

NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families. Length = 232
>gnl|CDD|187569 cd05259, PCBER_SDR_a, phenylcoumaran benzylic ether reductase (PCBER) like, atypical (a) SDRs Back     alignment and domain information
>gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 183
PF05368233 NmrA: NmrA-like family; InterPro: IPR008030 NmrA i 99.89
TIGR03649285 ergot_EASG ergot alkaloid biosynthesis protein, AF 99.85
CHL00194317 ycf39 Ycf39; Provisional 99.59
PLN02657390 3,8-divinyl protochlorophyllide a 8-vinyl reductas 99.16
PLN00016378 RNA-binding protein; Provisional 99.0
COG0702275 Predicted nucleoside-diphosphate-sugar epimerases 98.71
TIGR01214287 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme 98.16
PF13460183 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X 98.03
PLN00141251 Tic62-NAD(P)-related group II protein; Provisional 97.99
TIGR01746367 Thioester-redct thioester reductase domain. It has 97.78
PLN02695370 GDP-D-mannose-3',5'-epimerase 97.66
TIGR03466328 HpnA hopanoid-associated sugar epimerase. The sequ 97.6
PRK07201 657 short chain dehydrogenase; Provisional 97.6
TIGR01777292 yfcH conserved hypothetical protein TIGR01777. Thi 97.54
KOG1203411 consensus Predicted dehydrogenase [Carbohydrate tr 97.53
PRK05865 854 hypothetical protein; Provisional 97.36
COG1087329 GalE UDP-glucose 4-epimerase [Cell envelope biogen 97.35
TIGR01179328 galE UDP-glucose-4-epimerase. This enzyme intercon 97.32
PLN02240352 UDP-glucose 4-epimerase 97.26
TIGR01181317 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This 97.25
PRK10217355 dTDP-glucose 4,6-dehydratase; Provisional 97.23
PRK10675338 UDP-galactose-4-epimerase; Provisional 97.21
PLN02662322 cinnamyl-alcohol dehydrogenase family protein 97.18
PRK15181348 Vi polysaccharide biosynthesis protein TviC; Provi 97.09
PLN02427386 UDP-apiose/xylose synthase 97.06
PLN02572442 UDP-sulfoquinovose synthase 97.05
PLN02986322 cinnamyl-alcohol dehydrogenase family protein 97.04
PLN02583297 cinnamoyl-CoA reductase 96.88
PRK11908347 NAD-dependent epimerase/dehydratase family protein 96.85
PF04321286 RmlD_sub_bind: RmlD substrate binding domain; Inte 96.85
KOG2865391 consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 96.83
PRK10084352 dTDP-glucose 4,6 dehydratase; Provisional 96.8
PLN02686367 cinnamoyl-CoA reductase 96.77
TIGR02197314 heptose_epim ADP-L-glycero-D-manno-heptose-6-epime 96.64
PLN02989325 cinnamyl-alcohol dehydrogenase family protein 96.61
PLN03209 576 translocon at the inner envelope of chloroplast su 96.54
COG1091281 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo 96.47
PLN02166436 dTDP-glucose 4,6-dehydratase 96.46
PLN02260 668 probable rhamnose biosynthetic enzyme 96.42
COG0451314 WcaG Nucleoside-diphosphate-sugar epimerases [Cell 96.4
PLN02214342 cinnamoyl-CoA reductase 96.37
PLN02206442 UDP-glucuronate decarboxylase 96.37
PLN02650351 dihydroflavonol-4-reductase 96.18
PLN02725306 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas 96.09
PRK11150308 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro 95.92
KOG3019315 consensus Predicted nucleoside-diphosphate sugar e 95.65
PRK08125660 bifunctional UDP-glucuronic acid decarboxylase/UDP 95.55
PLN02778298 3,5-epimerase/4-reductase 94.9
PRK09987299 dTDP-4-dehydrorhamnose reductase; Provisional 94.84
TIGR03589324 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This 94.76
COG2910211 Putative NADH-flavin reductase [General function p 94.68
KOG4288283 consensus Predicted oxidoreductase [General functi 94.6
PLN00198338 anthocyanidin reductase; Provisional 94.48
COG1090297 Predicted nucleoside-diphosphate sugar epimerase [ 94.13
PRK07825273 short chain dehydrogenase; Provisional 93.99
TIGR02622349 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member 93.95
PLN02896353 cinnamyl-alcohol dehydrogenase 93.56
PRK05875276 short chain dehydrogenase; Provisional 93.5
KOG1431315 consensus GDP-L-fucose synthetase [Carbohydrate tr 93.4
KOG1502327 consensus Flavonol reductase/cinnamoyl-CoA reducta 93.35
PF01073280 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso 93.26
PF01370236 Epimerase: NAD dependent epimerase/dehydratase fam 92.99
TIGR01472343 gmd GDP-mannose 4,6-dehydratase. Excluded from thi 92.85
PRK08263275 short chain dehydrogenase; Provisional 92.41
COG1088340 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope 91.9
PLN02653340 GDP-mannose 4,6-dehydratase 91.36
PLN02996491 fatty acyl-CoA reductase 91.3
PRK12320 699 hypothetical protein; Provisional 90.23
PRK06482276 short chain dehydrogenase; Provisional 90.2
PRK12828239 short chain dehydrogenase; Provisional 89.93
PRK09291257 short chain dehydrogenase; Provisional 89.67
TIGR034431389 alpha_am_amid L-aminoadipate-semialdehyde dehydrog 89.38
PRK07326237 short chain dehydrogenase; Provisional 89.09
PRK07074257 short chain dehydrogenase; Provisional 88.84
PRK12825249 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; 88.08
PLN02260668 probable rhamnose biosynthetic enzyme 86.78
KOG0747331 consensus Putative NAD+-dependent epimerases [Carb 86.14
PRK07806248 short chain dehydrogenase; Provisional 84.91
PRK12826251 3-ketoacyl-(acyl-carrier-protein) reductase; Revie 82.89
PRK05786238 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; 81.95
PRK06180277 short chain dehydrogenase; Provisional 80.03
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA Back     alignment and domain information 
Probab=99.89  E-value=2.5e-23  Score=164.52  Aligned_cols=114  Identities=25%  Similarity=0.433  Sum_probs=96.0

Q ss_pred             CCceEeccCCCCCCCCcchhhhhchhhHHHHHHHHHHHHHCCCCeEEEecchHHHhhhc---------------------
Q 046779            2 FISQRFFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYLS---------------------   60 (183)
Q Consensus         2 ~~VkrFiPSefg~~~~~~~~~~~~~~~~~~k~~i~~~l~~~gi~~T~i~~g~F~~~~~~---------------------   60 (183)
                      .||||||||+|+.+........|..++++.|..++++|++++++||+|+||+||||++.                     
T Consensus        93 agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~i~~t~i~~g~f~e~~~~~~~~~~~~~~~~~~~~~~~~~  172 (233)
T PF05368_consen   93 AGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESGIPYTIIRPGFFMENLLPPFAPVVDIKKSKDVVTLPGPG  172 (233)
T ss_dssp             HT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCTSEBEEEEE-EEHHHHHTTTHHTTCSCCTSSEEEEETTS
T ss_pred             cccceEEEEEecccccccccccccchhhhhhhhhhhhhhhccccceeccccchhhhhhhhhcccccccccceEEEEccCC
Confidence            47999999999998754322224556789999999999999999999999999999864                     


Q ss_pred             ---ccc-cChhHHHHHHHHhhcCCccC--CeEEEEecCCCccCHHHHHHHHHHHhCCceeEEe
Q 046779           61 ---IIF-NKEDDIGINSIKAVDDPRTL--NKILYIRPRCNIYSFNDLVSLWEEKIGKALDRVY  117 (183)
Q Consensus        61 ---~~~-t~~~Dia~~va~~l~~p~~~--~~~~~v~~~~~~~T~~ev~~~~~~~~G~~~~~~~  117 (183)
                         ..+ ++.+|||+++|++|.+|+..  |+.+.+.  ++.+|++|+++++++++|++++|++
T Consensus       173 ~~~~~~~~~~~Dvg~~va~il~~p~~~~~~~~~~~~--~~~~t~~eia~~~s~~~G~~v~y~~  233 (233)
T PF05368_consen  173 NQKAVPVTDTRDVGRAVAAILLDPEKHNNGKTIFLA--GETLTYNEIAAILSKVLGKKVKYVQ  233 (233)
T ss_dssp             TSEEEEEEHHHHHHHHHHHHHHSGGGTTEEEEEEEG--GGEEEHHHHHHHHHHHHTSEEEEEE
T ss_pred             CccccccccHHHHHHHHHHHHcChHHhcCCEEEEeC--CCCCCHHHHHHHHHHHHCCccEEeC
Confidence               334 59999999999999999854  6888887  7999999999999999999999874

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family Back     alignment and domain information
>CHL00194 ycf39 Ycf39; Provisional Back     alignment and domain information
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase Back     alignment and domain information
>PLN00016 RNA-binding protein; Provisional Back     alignment and domain information
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase Back     alignment and domain information
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B Back     alignment and domain information
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional Back     alignment and domain information
>TIGR01746 Thioester-redct thioester reductase domain Back     alignment and domain information
>PLN02695 GDP-D-mannose-3',5'-epimerase Back     alignment and domain information
>TIGR03466 HpnA hopanoid-associated sugar epimerase Back     alignment and domain information
>PRK07201 short chain dehydrogenase; Provisional Back     alignment and domain information
>TIGR01777 yfcH conserved hypothetical protein TIGR01777 Back     alignment and domain information
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05865 hypothetical protein; Provisional Back     alignment and domain information
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR01179 galE UDP-glucose-4-epimerase Back     alignment and domain information
>PLN02240 UDP-glucose 4-epimerase Back     alignment and domain information
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase Back     alignment and domain information
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional Back     alignment and domain information
>PRK10675 UDP-galactose-4-epimerase; Provisional Back     alignment and domain information
>PLN02662 cinnamyl-alcohol dehydrogenase family protein Back     alignment and domain information
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional Back     alignment and domain information
>PLN02427 UDP-apiose/xylose synthase Back     alignment and domain information
>PLN02572 UDP-sulfoquinovose synthase Back     alignment and domain information
>PLN02986 cinnamyl-alcohol dehydrogenase family protein Back     alignment and domain information
>PLN02583 cinnamoyl-CoA reductase Back     alignment and domain information
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional Back     alignment and domain information
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 Back     alignment and domain information
>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] Back     alignment and domain information
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional Back     alignment and domain information
>PLN02686 cinnamoyl-CoA reductase Back     alignment and domain information
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase Back     alignment and domain information
>PLN02989 cinnamyl-alcohol dehydrogenase family protein Back     alignment and domain information
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional Back     alignment and domain information
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02166 dTDP-glucose 4,6-dehydratase Back     alignment and domain information
>PLN02260 probable rhamnose biosynthetic enzyme Back     alignment and domain information
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02214 cinnamoyl-CoA reductase Back     alignment and domain information
>PLN02206 UDP-glucuronate decarboxylase Back     alignment and domain information
>PLN02650 dihydroflavonol-4-reductase Back     alignment and domain information
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase Back     alignment and domain information
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional Back     alignment and domain information
>KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated Back     alignment and domain information
>PLN02778 3,5-epimerase/4-reductase Back     alignment and domain information
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional Back     alignment and domain information
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase Back     alignment and domain information
>COG2910 Putative NADH-flavin reductase [General function prediction only] Back     alignment and domain information
>KOG4288 consensus Predicted oxidoreductase [General function prediction only] Back     alignment and domain information
>PLN00198 anthocyanidin reductase; Provisional Back     alignment and domain information
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] Back     alignment and domain information
>PRK07825 short chain dehydrogenase; Provisional Back     alignment and domain information
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase Back     alignment and domain information
>PLN02896 cinnamyl-alcohol dehydrogenase Back     alignment and domain information
>PRK05875 short chain dehydrogenase; Provisional Back     alignment and domain information
>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] Back     alignment and domain information
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones Back     alignment and domain information
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor Back     alignment and domain information
>TIGR01472 gmd GDP-mannose 4,6-dehydratase Back     alignment and domain information
>PRK08263 short chain dehydrogenase; Provisional Back     alignment and domain information
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02653 GDP-mannose 4,6-dehydratase Back     alignment and domain information
>PLN02996 fatty acyl-CoA reductase Back     alignment and domain information
>PRK12320 hypothetical protein; Provisional Back     alignment and domain information
>PRK06482 short chain dehydrogenase; Provisional Back     alignment and domain information
>PRK12828 short chain dehydrogenase; Provisional Back     alignment and domain information
>PRK09291 short chain dehydrogenase; Provisional Back     alignment and domain information
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase Back     alignment and domain information
>PRK07326 short chain dehydrogenase; Provisional Back     alignment and domain information
>PRK07074 short chain dehydrogenase; Provisional Back     alignment and domain information
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional Back     alignment and domain information
>PLN02260 probable rhamnose biosynthetic enzyme Back     alignment and domain information
>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK07806 short chain dehydrogenase; Provisional Back     alignment and domain information
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed Back     alignment and domain information
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional Back     alignment and domain information
>PRK06180 short chain dehydrogenase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query183
1qyc_A308 Crystal Structures Of Pinoresinol-Lariciresinol And 2e-59
2gas_A307 Crystal Structure Of Isoflavone Reductase Length = 1e-45
1qyd_A313 Crystal Structures Of Pinoresinol-Lariciresinol And 1e-36
3i52_A346 Ternary Complex Structure Of Leucoanthocyanidin Red 6e-32
3c1o_A321 The Multiple Phenylpropene Synthases In Both Clarki 1e-30
2qw8_A314 Structure Of Eugenol Synthase From Ocimum Basilicum 2e-26
2qx7_A318 Structure Of Eugenol Synthase From Ocimum Basilicum 3e-26
3c3x_A318 The Multiple Phenylpropene Synthases In Both Clarki 3e-26
2r2g_A318 Structure Of Eugenol Synthase From Ocimum Basilicum 7e-26
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And Phenylcoumaran Benzylic Ether Reductases, And Their Relationship To Isoflavone Reductases Length = 308 Back     alignment and structure 
Iteration: 1

 Score =  224 bits (571), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 113/203 (55%), Positives = 142/203 (69%), Gaps = 25/203 (12%)
Query: 5   QRFFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYLS---- 60
           +RFFPSEFGNDVD VHAVE A++ F  KAK+RRA+EAE IPYTYV+SN FAG +L     
Sbjct: 107 KRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQ 166
Query: 61  --------------------IIFNKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSFND 100
                               ++F KE+DIG  +IKAVDDPRTLNK LY+R   N  S N+
Sbjct: 167 AGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNE 226
Query: 101 LVSLWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPSFG 160
           LV+LWE+KI K L++ YV EE++LK I +  +P N+ + I HS +V GDQTNFEI P+ G
Sbjct: 227 LVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIGPA-G 285
Query: 161 VEATELYPDVNYTTVDEYLNQFI 183
           VEA++LYPDV YTTVDEYL+ F+
Sbjct: 286 VEASQLYPDVKYTTVDEYLSNFV 308
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase Length = 307 Back     alignment and structure
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And Phenylcoumaran Benzylic Ether Reductases, And Their Relationship To Isoflavone Reductases Length = 313 Back     alignment and structure
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase From Vitis Vinifera Length = 346 Back     alignment and structure
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia Breweri And Petunia Hybrida Represent Two Distinct Lineages Length = 321 Back     alignment and structure
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum Length = 314 Back     alignment and structure
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum Length = 318 Back     alignment and structure
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia Breweri And Petunia Hybrida Represent Two Distinct Lineages Length = 318 Back     alignment and structure
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum Complexed With Emdf Length = 318 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query183
2gas_A307 Isoflavone reductase; NADPH-dependent reductase, o 2e-60
1qyc_A308 Phenylcoumaran benzylic ether reductase PT1; NADPH 5e-60
3i6i_A346 Putative leucoanthocyanidin reductase 1; rossmann 7e-60
1qyd_A313 Pinoresinol-lariciresinol reductase; NADPH-depende 5e-56
3c1o_A321 Eugenol synthase; phenylpropene, PIP reductase, sh 6e-56
2r6j_A318 Eugenol synthase 1; phenylpropene, PIP reductase, 1e-54
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307 Back     alignment and structure
 Score =  189 bits (481), Expect = 2e-60
 Identities = 92/203 (45%), Positives = 128/203 (63%), Gaps = 25/203 (12%)

Query: 5   QRFFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYLS---- 60
           ++FFPSEFG DVDR  AVE  R  F  KA IRR +EAE +PYTY+  + F G +L     
Sbjct: 106 KKFFPSEFGLDVDRHDAVEPVRQVFEEKASIRRVIEAEGVPYTYLCCHAFTGYFLRNLAQ 165

Query: 61  --------------------IIFNKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSFND 100
                                 +  E D+G  +I+A +DP TLNK ++IR   N  + N+
Sbjct: 166 LDATDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAANDPNTLNKAVHIRLPKNYLTQNE 225

Query: 101 LVSLWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPSFG 160
           +++LWE+KIGK L++ YV+EEQ+LK+IQE+S+P N +L + HS  + GD   +EI+P+  
Sbjct: 226 VIALWEKKIGKTLEKTYVSEEQVLKDIQESSFPHNYLLALYHSQQIKGDAV-YEIDPAKD 284

Query: 161 VEATELYPDVNYTTVDEYLNQFI 183
           +EA+E YPDV YTT DEYLNQF+
Sbjct: 285 IEASEAYPDVTYTTADEYLNQFV 307
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 Back     alignment and structure
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346 Back     alignment and structure
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313 Back     alignment and structure
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321 Back     alignment and structure
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Length = 318 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query183
2gas_A307 Isoflavone reductase; NADPH-dependent reductase, o 99.94
3i6i_A346 Putative leucoanthocyanidin reductase 1; rossmann 99.94
1qyc_A308 Phenylcoumaran benzylic ether reductase PT1; NADPH 99.94
2r6j_A318 Eugenol synthase 1; phenylpropene, PIP reductase, 99.94
1qyd_A313 Pinoresinol-lariciresinol reductase; NADPH-depende 99.93
3c1o_A321 Eugenol synthase; phenylpropene, PIP reductase, sh 99.92
2wm3_A299 NMRA-like family domain containing protein 1; unkn 99.65
3e48_A289 Putative nucleoside-diphosphate-sugar epimerase; a 99.65
2zcu_A286 Uncharacterized oxidoreductase YTFG; alpha-beta sa 99.5
2jl1_A287 Triphenylmethane reductase; oxidoreductase, biorem 99.48
1xgk_A352 Nitrogen metabolite repression regulator NMRA; ros 99.04
3e8x_A236 Putative NAD-dependent epimerase/dehydratase; stru 98.8
3m2p_A311 UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J 98.74
3ius_A286 Uncharacterized conserved protein; APC63810, silic 98.73
1xq6_A253 Unknown protein; structural genomics, protein stru 98.72
4id9_A347 Short-chain dehydrogenase/reductase; putative dehy 98.69
3dqp_A219 Oxidoreductase YLBE; alpha-beta protein., structur 98.52
3vps_A321 TUNA, NAD-dependent epimerase/dehydratase; tunicam 98.49
3sc6_A287 DTDP-4-dehydrorhamnose reductase; RFBD, structural 98.44
2x4g_A342 Nucleoside-diphosphate-sugar epimerase; isomerase; 98.42
3gpi_A286 NAD-dependent epimerase/dehydratase; structural ge 98.39
4egb_A346 DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce 98.38
4b8w_A319 GDP-L-fucose synthase; oxidoreductase; HET: NAP GD 98.36
3ko8_A312 NAD-dependent epimerase/dehydratase; isomerase, UD 98.3
3slg_A372 PBGP3 protein; structural genomics, seattle struct 98.3
2q1s_A377 Putative nucleotide sugar epimerase/ dehydratase; 98.29
1vl0_A292 DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s 98.25
3dhn_A227 NAD-dependent epimerase/dehydratase; reductase, PF 98.24
3ruf_A351 WBGU; rossmann fold, UDP-hexose 4-epimerase, isome 98.22
1e6u_A321 GDP-fucose synthetase; epimerase/reductase, SDR, R 98.19
1hdo_A206 Biliverdin IX beta reductase; foetal metabolism, H 98.18
2yy7_A312 L-threonine dehydrogenase; thermolabIle, flavobact 98.11
3ew7_A221 LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend 98.1
1rkx_A357 CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 98.09
2pk3_A321 GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor 98.09
4f6c_A427 AUSA reductase domain protein; thioester reductase 98.08
1sb8_A352 WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN 98.07
1r6d_A337 TDP-glucose-4,6-dehydratase; rossmann fold, short- 98.04
3st7_A369 Capsular polysaccharide synthesis enzyme CAP5F; ro 98.02
2p5y_A311 UDP-glucose 4-epimerase; TTHA0591, structural geno 98.01
2v6g_A364 Progesterone 5-beta-reductase; tyrosine-dependent 98.0
2c20_A330 UDP-glucose 4-epimerase; carbohydrate metabolism, 97.98
3ehe_A313 UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, 97.97
2b69_A343 UDP-glucuronate decarboxylase 1; UDP-glucoronic ac 97.93
3r6d_A221 NAD-dependent epimerase/dehydratase; structural ge 97.92
2c5a_A379 GDP-mannose-3', 5'-epimerase; short chain dehydrat 97.89
2pzm_A330 Putative nucleotide sugar epimerase/ dehydratase; 97.89
1n2s_A299 DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold 97.88
1rpn_A335 GDP-mannose 4,6-dehydratase; short-chain dehydroge 97.87
4f6l_B508 AUSA reductase domain protein; thioester reductase 97.86
1eq2_A310 ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin 97.85
2ydy_A315 Methionine adenosyltransferase 2 subunit beta; oxi 97.83
2bll_A345 Protein YFBG; decarboxylase, short chain dehydroge 97.82
1i24_A404 Sulfolipid biosynthesis protein SQD1; SDR, short-c 97.81
1orr_A347 CDP-tyvelose-2-epimerase; rossmann fold, short-cha 97.79
2x6t_A357 ADP-L-glycero-D-manno-heptose-6-epimerase; isomera 97.79
3qvo_A236 NMRA family protein; structural genomics, PSI-biol 97.76
3enk_A341 UDP-glucose 4-epimerase; seattle structural genomi 97.71
3ajr_A317 NDP-sugar epimerase; L-threonine dehydrogenase, L- 97.71
2q1w_A333 Putative nucleotide sugar epimerase/ dehydratase; 97.64
3sxp_A362 ADP-L-glycero-D-mannoheptose-6-epimerase; rossman 97.61
3ay3_A267 NAD-dependent epimerase/dehydratase; glucuronic ac 97.57
2ggs_A273 273AA long hypothetical DTDP-4-dehydrorhamnose red 97.56
1t2a_A375 GDP-mannose 4,6 dehydratase; structural genomics c 97.54
3nzo_A399 UDP-N-acetylglucosamine 4,6-dehydratase; structura 97.53
1ek6_A348 UDP-galactose 4-epimerase; short-chain dehydrogena 97.52
1oc2_A348 DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos 97.5
2a35_A215 Hypothetical protein PA4017; alpha-beta-alpha sand 97.48
1gy8_A397 UDP-galactose 4-epimerase; oxidoreductase; HET: NA 97.47
2hun_A336 336AA long hypothetical DTDP-glucose 4,6-dehydrat; 97.45
4b4o_A298 Epimerase family protein SDR39U1; isomerase; HET: 97.44
1y1p_A342 ARII, aldehyde reductase II; rossmann fold, short 97.44
3oh8_A516 Nucleoside-diphosphate sugar epimerase (SULA FAMI; 97.38
4dqv_A478 Probable peptide synthetase NRP (peptide synthase; 97.34
1kew_A361 RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo 97.33
1z45_A 699 GAL10 bifunctional protein; epimerase, mutarotase, 97.29
3h2s_A224 Putative NADH-flavin reductase; Q03B84, NESG, LCR1 97.18
1z7e_A660 Protein aRNA; rossmann fold, OB-like fold, hydrola 97.16
2gn4_A344 FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann 97.13
1db3_A372 GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya 97.02
1udb_A338 Epimerase, UDP-galactose-4-epimerase; isomerase; H 96.94
2z1m_A345 GDP-D-mannose dehydratase; short-chain dehydrogena 96.88
1n7h_A381 GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, 96.85
2hrz_A342 AGR_C_4963P, nucleoside-diphosphate-sugar epimeras 96.62
2p4h_X322 Vestitone reductase; NADPH-dependent reductase, is 96.4
2bka_A242 CC3, TAT-interacting protein TIP30; NADPH, PEG600, 96.32
2c29_D337 Dihydroflavonol 4-reductase; flavonoids, short deh 95.83
2rh8_A338 Anthocyanidin reductase; flavonoids, rossmann fold 95.46
2bgk_A278 Rhizome secoisolariciresinol dehydrogenase; oxidor 95.24
1spx_A278 Short-chain reductase family member (5L265); paral 95.14
1w6u_A302 2,4-dienoyl-COA reductase, mitochondrial precursor 93.34
2dkn_A255 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta 92.35
3rft_A267 Uronate dehydrogenase; apoenzyme, rossmann fold, N 90.97
3d7l_A202 LIN1944 protein; APC89317, structural genomics, PS 90.52
2yut_A207 Putative short-chain oxidoreductase; alpha and bet 90.2
2gdz_A267 NAD+-dependent 15-hydroxyprostaglandin dehydrogen; 89.78
1fmc_A255 7 alpha-hydroxysteroid dehydrogenase; short-chain 89.36
3svt_A281 Short-chain type dehydrogenase/reductase; ssgcid, 89.25
2ehd_A234 Oxidoreductase, oxidoreductase, short-chain dehydr 89.25
3qlj_A322 Short chain dehydrogenase; structural genomics, se 87.83
1uay_A242 Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid 86.97
2pd6_A264 Estradiol 17-beta-dehydrogenase 8; short-chain deh 86.27
3u9l_A324 3-oxoacyl-[acyl-carrier-protein] reductase; struct 85.38
2hq1_A247 Glucose/ribitol dehydrogenase; CTH-1438, structura 83.81
2bd0_A244 Sepiapterin reductase; oxidoreductase; HET: NAP BI 83.66
1zk4_A251 R-specific alcohol dehydrogenase; short chain redu 82.57
2cfc_A250 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor 82.48
3m1a_A281 Putative dehydrogenase; short, PSI, MCSG, structur 81.69
2zat_A260 Dehydrogenase/reductase SDR family member 4; alpha 81.16
1cyd_A244 Carbonyl reductase; short-chain dehydrogenase, oxi 80.85
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Back     alignment and structure
Probab=99.94  E-value=3.6e-27  Score=190.89  Aligned_cols=179  Identities=50%  Similarity=0.829  Sum_probs=143.7

Q ss_pred             C-ceEeccCCCCCCCCcchhhhhchhhHHHHHHHHHHHHHCCCCeEEEecchHHHhhhc---------------------
Q 046779            3 I-SQRFFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYLS---------------------   60 (183)
Q Consensus         3 ~-VkrFiPSefg~~~~~~~~~~~~~~~~~~k~~i~~~l~~~gi~~T~i~~g~F~~~~~~---------------------   60 (183)
                      | |||||+|.||.+.+......|....|..|..+++++++.+++||+|+||+|++++.+                     
T Consensus       103 g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~~~~i~~~~lrp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (307)
T 2gas_A          103 GNVKKFFPSEFGLDVDRHDAVEPVRQVFEEKASIRRVIEAEGVPYTYLCCHAFTGYFLRNLAQLDATDPPRDKVVILGDG  182 (307)
T ss_dssp             CCCSEEECSCCSSCTTSCCCCTTHHHHHHHHHHHHHHHHHHTCCBEEEECCEETTTTGGGTTCTTCSSCCSSEEEEETTS
T ss_pred             CCceEEeecccccCcccccCCCcchhHHHHHHHHHHHHHHcCCCeEEEEcceeeccccccccccccccCCCCeEEEecCC
Confidence            5 999999999976543211123334569999999999999999999999999986532                     


Q ss_pred             ---ccccChhHHHHHHHHhhcCCccCCeEEEEecCCCccCHHHHHHHHHHHhCCceeEEeCCHHHHHHHHHHcCCCccch
Q 046779           61 ---IIFNKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSFNDLVSLWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMI  137 (183)
Q Consensus        61 ---~~~t~~~Dia~~va~~l~~p~~~~~~~~v~~~~~~~T~~ev~~~~~~~~G~~~~~~~~s~~~~~~~~~~~~~p~~~~  137 (183)
                         .++++.+|+|++++.++.+++..|+.+++.|+++.+|++|+++++++++|+++++.+++.+++.+.+...+.|.+..
T Consensus       183 ~~~~~~i~~~Dva~~~~~~l~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (307)
T 2gas_A          183 NVKGAYVTEADVGTFTIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVSEEQVLKDIQESSFPHNYL  262 (307)
T ss_dssp             CSEEEEECHHHHHHHHHHHHTCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCEEEEECHHHHHHHHHHBCTTHHHH
T ss_pred             CcceEEeeHHHHHHHHHHHHcCccccCceEEEeCCCCcCCHHHHHHHHHHHhCCCCceeecCHHHHHHHHhcCCCchhHH
Confidence               57899999999999999988877899999865679999999999999999999999999999999988877787655


Q ss_pred             hhhheeeEEcCCCc-CcccCCCCcccccccCCCCcccCHHHHHHhhC
Q 046779          138 LPIGHSAYVLGDQT-NFEIEPSFGVEATELYPDVNYTTVDEYLNQFI  183 (183)
Q Consensus       138 ~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~~p~~~~~t~~e~l~~~~  183 (183)
                      +.+++.++..|... .++.++  +...+++|||++++|++|||++++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~t~~~~l~~~~  307 (307)
T 2gas_A          263 LALYHSQQIKGDAVYEIDPAK--DIEASEAYPDVTYTTADEYLNQFV  307 (307)
T ss_dssp             HHHHHHHHTSCTTCCCCCTTT--EEEHHHHCTTCCCCCHHHHHGGGC
T ss_pred             HHHHHHHeecCcccCCCCcCC--CcchHhhCCCCccccHHHHHHHhC
Confidence            55555555445432 234332  245688999999999999999985
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Back     alignment and structure
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Back     alignment and structure
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Back     alignment and structure
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Back     alignment and structure
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Back     alignment and structure
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Back     alignment and structure
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Back     alignment and structure
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Back     alignment and structure
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Back     alignment and structure
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Back     alignment and structure
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Back     alignment and structure
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Back     alignment and structure
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Back     alignment and structure
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Back     alignment and structure
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* Back     alignment and structure
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Back     alignment and structure
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Back     alignment and structure
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 Back     alignment and structure
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Back     alignment and structure
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Back     alignment and structure
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Back     alignment and structure
>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} Back     alignment and structure
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* Back     alignment and structure
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Back     alignment and structure
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Back     alignment and structure
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 Back     alignment and structure
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Back     alignment and structure
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* Back     alignment and structure
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Back     alignment and structure
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Back     alignment and structure
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Back     alignment and structure
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Back     alignment and structure
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Back     alignment and structure
>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} Back     alignment and structure
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Back     alignment and structure
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Back     alignment and structure
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Back     alignment and structure
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Back     alignment and structure
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Back     alignment and structure
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Back     alignment and structure
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 Back     alignment and structure
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Back     alignment and structure
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* Back     alignment and structure
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Back     alignment and structure
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Back     alignment and structure
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* Back     alignment and structure
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Back     alignment and structure
>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} Back     alignment and structure
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Back     alignment and structure
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Back     alignment and structure
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Back     alignment and structure
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Back     alignment and structure
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Back     alignment and structure
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Back     alignment and structure
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Back     alignment and structure
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 Back     alignment and structure
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Back     alignment and structure
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Back     alignment and structure
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Back     alignment and structure
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Back     alignment and structure
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} Back     alignment and structure
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 Back     alignment and structure
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Back     alignment and structure
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Back     alignment and structure
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Back     alignment and structure
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Back     alignment and structure
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Back     alignment and structure
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} Back     alignment and structure
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Back     alignment and structure
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Back     alignment and structure
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Back     alignment and structure
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Back     alignment and structure
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Back     alignment and structure
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Back     alignment and structure
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Back     alignment and structure
>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 Back     alignment and structure
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Back     alignment and structure
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* Back     alignment and structure
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* Back     alignment and structure
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Back     alignment and structure
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Back     alignment and structure
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Back     alignment and structure
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Back     alignment and structure
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Back     alignment and structure
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Back     alignment and structure
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Back     alignment and structure
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Back     alignment and structure
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} Back     alignment and structure
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Back     alignment and structure
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} Back     alignment and structure
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} Back     alignment and structure
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Back     alignment and structure
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Back     alignment and structure
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} Back     alignment and structure
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} Back     alignment and structure
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} Back     alignment and structure
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 Back     alignment and structure
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} Back     alignment and structure
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Back     alignment and structure
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} Back     alignment and structure
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 Back     alignment and structure
>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Back     alignment and structure
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Back     alignment and structure
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Back     alignment and structure
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Back     alignment and structure
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 183
d1qyca_307 c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta 1e-31
d1qyda_312 c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { 4e-30
>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

 Score =  114 bits (284), Expect = 1e-31
 Identities = 70/117 (59%), Positives = 90/117 (76%), Gaps = 1/117 (0%)

Query: 67  DDIGINSIKAVDDPRTLNKILYIRPRCNIYSFNDLVSLWEEKIGKALDRVYVTEEQLLKN 126
           +DIG  +IKAVDDPRTLNK LY+R   N  S N+LV+LWE+KI K L++ YV EE++LK 
Sbjct: 192 EDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKL 251

Query: 127 IQEASYPLNMILPIGHSAYVLGDQTNFEIEPSFGVEATELYPDVNYTTVDEYLNQFI 183
           I +  +P N+ + I HS +V GDQTNFEI P+ GVEA++LYPDV YTTVDEYL+ F+
Sbjct: 252 IADTPFPANISIAISHSIFVKGDQTNFEIGPA-GVEASQLYPDVKYTTVDEYLSNFV 307
>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query183
d1qyda_312 Pinoresinol-lariciresinol reductase {Giant arborvi 99.9
d1qyca_307 Phenylcoumaran benzylic ether reductase {Loblolly 99.89
d1xgka_350 Negative transcriptional regulator NmrA {Aspergill 99.38
d1hdoa_205 Biliverdin IX beta reductase {Human (Homo sapiens) 99.05
d2q46a1252 Hypothetical protein At5g02240 (T7H20_290) {Thale 98.53
d1vl0a_281 DTDP-4-dehydrorhamnose reductase RfbD {Clostridium 97.89
d1r6da_322 dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces 97.52
d2c5aa1363 GDP-mannose-3', 5'-epimerase {Thale cress (Arabido 97.44
d2a35a1212 Hypothetical protein PA4017 {Pseudomonas aeruginos 97.4
d2bkaa1232 TAT-interacting protein TIP30 {Human (Homo sapiens 97.39
d2blla1342 Polymyxin resistance protein ArnA (PrmI) {Escheric 96.99
d1db3a_357 GDP-mannose 4,6-dehydratase {Escherichia coli [Tax 96.88
d2b69a1312 UDP-glucuronate decarboxylase 1 {Human (Homo sapie 96.76
d1ek6a_346 Uridine diphosphogalactose-4-epimerase (UDP-galact 96.23
d1sb8a_341 UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo 96.2
d1udca_338 Uridine diphosphogalactose-4-epimerase (UDP-galact 96.1
d1oc2a_346 dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus 95.69
d1i24a_393 Sulfolipid biosynthesis protein SQD1 {Thale cress 95.68
d1n7ha_339 GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop 95.41
d1y1pa1342 Aldehyde reductase II {Sporobolomyces salmonicolor 95.2
d1kewa_361 dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus 95.09
d1e6ua_315 GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( 94.9
d1gy8a_383 Uridine diphosphogalactose-4-epimerase (UDP-galact 94.71
d1rpna_321 GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos 94.7
d1t2aa_347 GDP-mannose 4,6-dehydratase {Human (Homo sapiens) 92.7
d1z45a2347 Uridine diphosphogalactose-4-epimerase (UDP-galact 92.0
d1eq2a_307 ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric 91.31
d1orra_338 CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 89.12
d1n2sa_298 dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S 88.25
>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=99.90  E-value=3.6e-24  Score=170.25  Aligned_cols=181  Identities=42%  Similarity=0.773  Sum_probs=146.6

Q ss_pred             CCceEeccCCCCCCCCcchh-hhhchhhHHHHHHHHHHHHHCCCCeEEEecchHHHhhhc--------------------
Q 046779            2 FISQRFFPSEFGNDVDRVHA-VELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYLS--------------------   60 (183)
Q Consensus         2 ~~VkrFiPSefg~~~~~~~~-~~~~~~~~~~k~~i~~~l~~~gi~~T~i~~g~F~~~~~~--------------------   60 (183)
                      .++++|++|.+|.+...... ..+.......|..+++++++.+++|++++++.|+.++.+                    
T Consensus       106 ~~~~~v~~Ss~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  185 (312)
T d1qyda_         106 GNIKRFLPSEFGMDPDIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYG  185 (312)
T ss_dssp             CCCSEEECSCCSSCTTSCCCCCSSTTHHHHHHHHHHHHHHHTTCCBCEEECCEEHHHHTTTSSCTTCCSSCCSSEECCBT
T ss_pred             cCCcEEEEeeccccCCCcccccchhhhhhHHHHHHHHhhcccccceEEeccceeecCCccchhhHHHHhhhccccccccc
Confidence            46899999999987644311 123344578899999999999999999999999986532                    


Q ss_pred             -----ccccChhHHHHHHHHhhcCCccCCeEEEEecCCCccCHHHHHHHHHHHhCCceeEEeCCHHHHHHHHHHcCCCcc
Q 046779           61 -----IIFNKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSFNDLVSLWEEKIGKALDRVYVTEEQLLKNIQEASYPLN  135 (183)
Q Consensus        61 -----~~~t~~~Dia~~va~~l~~p~~~~~~~~v~~~~~~~T~~ev~~~~~~~~G~~~~~~~~s~~~~~~~~~~~~~p~~  135 (183)
                           .++++++|+|++++++|.+|+..++.+++.++++.+|++|+++.+++++|+++++.+++.+++.+.+...+.|..
T Consensus       186 ~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~  265 (312)
T d1qyda_         186 DGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQDFLADMKDKSYEEK  265 (312)
T ss_dssp             TSCSEEEEECHHHHHHHHHHHTTCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBCSHHHHHHHTTSCTTHH
T ss_pred             ccccccceeeHHHHHHHHHHHhcCccccCceEEEeCCCcCCCHHHHHHHHHHHHCCCCeEEECCHHHHHHHHHhcCCcHh
Confidence                 779999999999999999999888888877667899999999999999999999999999999888877777766


Q ss_pred             chhhhheeeEEcCCCcCcccCCCCcccccccCCCCcccCHHHHHHhhC
Q 046779          136 MILPIGHSAYVLGDQTNFEIEPSFGVEATELYPDVNYTTVDEYLNQFI  183 (183)
Q Consensus       136 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~p~~~~~t~~e~l~~~~  183 (183)
                      ....+.+.++..|....+++.+. ....+++|||+++||++|||++|+
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~-~~ea~~l~Pd~~~tt~~e~l~~~v  312 (312)
T d1qyda_         266 IVRCHLYQIFFRGDLYNFEIGPN-AIEATKLYPEVKYVTMDSYLERYV  312 (312)
T ss_dssp             HHTTTHHHHTTSCTTTSSCCCSS-EEEHHHHCTTSCCCCHHHHHTTTC
T ss_pred             HHHHHHHHHHhcCcccccccCcc-hhhHHHhCCCCCcCcHHHHHHhhC
Confidence            55555555555565544444332 345678899999999999999986
>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Back     information, alignment and structure
>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Back     information, alignment and structure
>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Back     information, alignment and structure
>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Back     information, alignment and structure
>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Back     information, alignment and structure
>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Back     information, alignment and structure