Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value
Query 114
pfam02799 190
pfam02799, NMT_C, Myristoyl-CoA:protein N-myristoy
7e-63
COG5092 451
COG5092, NMT1, N-myristoyl transferase [Lipid meta
6e-30
>gnl|CDD|202401 pfam02799, NMT_C, Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain
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Score = 188 bits (481), Expect = 7e-63
Identities = 69/112 (61%), Positives = 86/112 (76%), Gaps = 1/112 (0%)
Query: 3 VASPETHEITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVSTKTPLLQLMNDALIVAKQK 62
V E +ITDF SFY+LPS+++GNP + TLKAAYS+Y +T T L QLMNDALI+AK
Sbjct: 79 VVENEDGKITDFFSFYSLPSTVIGNPKHKTLKAAYSFYYAATSTRLKQLMNDALILAKNL 138
Query: 63 DFDVFNALDVMQNESFLKELKFGPGDGKLHYYLYNYRIRQAVLA-SELGLVL 113
FDVFNALD+M N+ FL++LKFGPGDG+L+YYLYNYR + S +GLVL
Sbjct: 139 GFDVFNALDLMDNKLFLEDLKFGPGDGQLNYYLYNYRCPPIMGGISGVGLVL 190
The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. Length = 190
>gnl|CDD|227423 COG5092, NMT1, N-myristoyl transferase [Lipid metabolism]
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Score = 110 bits (276), Expect = 6e-30
Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 15/113 (13%)
Query: 1 FLVASPETHEITDFCSFYTLPSSILGNPNYSTLKAAYSYY--------------NVSTKT 46
++V P +ITDF SFY+LP + + N Y ++ Y YY + KT
Sbjct: 313 YVVEEPNG-KITDFFSFYSLPFTTIENKKYKDIQGGYLYYYAGDDQFKDFDPKATKALKT 371
Query: 47 PLLQLMNDALIVAKQKDFDVFNALDVMQNESFLKELKFGPGDGKLHYYLYNYR 99
+ +++ DA+I+AK + DVFNAL +M N FL +LKFG GDG L+YYLYNY+
Sbjct: 372 RVAEMVGDAMILAKVEGCDVFNALTMMDNSLFLADLKFGCGDGFLNYYLYNYK 424
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value
Query
114
d1rxta2 201
d.108.1.2 (A:219-455) N-myristoyl transferase, NMT
3e-51
d1iyka2 227
d.108.1.2 (A:225-451) N-myristoyl transferase, NMT
4e-48
d1iica2 237
d.108.1.2 (A:219-455) N-myristoyl transferase, NMT
1e-45
>d1rxta2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Human (Homo sapiens) [TaxId: 9606]} Length = 201
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class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-myristoyl transferase, NMT
domain: N-myristoyl transferase, NMT
species: Human (Homo sapiens) [TaxId: 9606]
Score = 158 bits (401), Expect = 3e-51
Identities = 65/112 (58%), Positives = 89/112 (79%), Gaps = 1/112 (0%)
Query: 2 LVASPETHEITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVSTKTPLLQLMNDALIVAKQ 61
V E+TDF SFYTLPS+I+ +P + +LKAAYS+YNV T+TPLL LM+DAL++AK
Sbjct: 90 FVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKM 149
Query: 62 KDFDVFNALDVMQNESFLKELKFGPGDGKLHYYLYNYRIRQAVLASELGLVL 113
K FDVFNALD+M+N++FL++LKFG GDG L YYLYN++ ++ A ++G+VL
Sbjct: 150 KGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWKC-PSMGAEKVGIVL 200
>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]} Length = 227
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class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-myristoyl transferase, NMT
domain: N-myristoyl transferase, NMT
species: Yeast (Candida albicans) [TaxId: 5476]
Score = 151 bits (382), Expect = 4e-48
Identities = 51/132 (38%), Positives = 66/132 (50%), Gaps = 20/132 (15%)
Query: 3 VASPETHEITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVST-------KTPLLQLMNDA 55
V E ITD+ S+Y LP ++L N + L AY +Y S K L +L+ DA
Sbjct: 96 VVEDENGIITDYFSYYLLPFTVLDNAQHDELGIAYLFYYASDSFEKPNYKKRLNELITDA 155
Query: 56 LIVAKQKDFDVFNALDVMQNESFLKELKFGPGDGKLHYYLYNYRI-------------RQ 102
LI +K+ DVFN L N FLK+ KFG GDG L+YYL+NYR
Sbjct: 156 LITSKKFGVDVFNCLTCQDNTYFLKDCKFGSGDGFLNYYLFNYRTFPMDGGIDKKTKEVV 215
Query: 103 AVLASELGLVLL 114
S +G+VLL
Sbjct: 216 EDQTSGIGVVLL 227
>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237
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class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-myristoyl transferase, NMT
domain: N-myristoyl transferase, NMT
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 145 bits (366), Expect = 1e-45
Identities = 55/143 (38%), Positives = 73/143 (51%), Gaps = 30/143 (20%)
Query: 1 FLVASPETHEITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVST---------------- 44
++V P+ +ITDF SFY+LP +IL N Y L Y YY +
Sbjct: 96 YVVEQPDG-KITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKA 154
Query: 45 -KTPLLQLMNDALIVAKQKDFDVFNALDVMQNESFLKELKFGPGDGKLHYYLYNYRI--- 100
KT L +L+ DA I+AK + DVFNAL N FL +LKFGPGDG L++YL+NYR
Sbjct: 155 LKTRLCELIYDACILAKNANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPI 214
Query: 101 ---------RQAVLASELGLVLL 114
S +G+V+L
Sbjct: 215 TGGLNPDNSNDIKRRSNVGVVML 237
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability
Query 114
d1iyka2 227
N-myristoyl transferase, NMT {Yeast (Candida albic
100.0
d1rxta2 201
N-myristoyl transferase, NMT {Human (Homo sapiens)
100.0
d1iica2 237
N-myristoyl transferase, NMT {Baker's yeast (Sacch
100.0
d2fe7a1 156
Probable N-acetyltransferase PA0478 {Pseudomonas a
87.87
d2euia1 153
Probable acetyltransferase PA4026 {Pseudomonas aer
86.5
>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]}
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class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-myristoyl transferase, NMT
domain: N-myristoyl transferase, NMT
species: Yeast (Candida albicans) [TaxId: 5476]
Probab=100.00 E-value=8.6e-57 Score=352.02 Aligned_cols=112 Identities=44% Similarity=0.728 Sum_probs=106.9
Q ss_pred CeeecCCCCccceeEEEeeccceeccCCCccceeeeeeEEEecCCCC-------HHHHHHHHHHHHHhCCCcEEeeeccc
Q 046799 1 FLVASPETHEITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVSTKTP-------LLQLMNDALIVAKQKDFDVFNALDVM 73 (114)
Q Consensus 1 yVve~~~~~~itdf~SFY~Lpstvi~~~~~~~l~aAY~~Y~~~~~~~-------l~~L~~dali~Ak~~gfDVFNaL~im 73 (114)
||||++ +|+||||+|||+||||||+|++|++|+|||+||+++++.+ |++||+||||+||+.|||||||||+|
T Consensus 95 YVve~~-~g~ItDF~SFY~Lpstvi~~~~h~~l~aAY~fY~~~~~~~~~~~k~~l~~Li~Dali~Ak~~~fDVFNaL~~m 173 (227)
T d1iyka2 95 YVVEDE-NGIITDYFSYYLLPFTVLDNAQHDELGIAYLFYYASDSFEKPNYKKRLNELITDALITSKKFGVDVFNCLTCQ 173 (227)
T ss_dssp EEEECT-TSCEEEEEEEEECCEEESSCSSCSEECEEEEEEEEETTTTSTTHHHHHHHHHHHHHHHHGGGTCSEEEEESCT
T ss_pred EEEECC-CCcEeEEEEEeeccHHhhCCCccceEEEEEEEEEEeecccchhhhhhHHHHHHHHHHHHHHcCCcEEEccccc
Confidence 799984 5899999999999999999999999999999999999765 99999999999999999999999999
Q ss_pred cChhhhhhcCCCCCccceeEEEEeccCCccC--------------CCCceeEEeC
Q 046799 74 QNESFLKELKFGPGDGKLHYYLYNYRIRQAV--------------LASELGLVLL 114 (114)
Q Consensus 74 ~N~~fL~~lkF~~GdG~L~YYLyNw~~~~~i--------------~~~~vglvl~ 114 (114)
+|++||++|||++|||+|||||||||||+ | +|++||+|||
T Consensus 174 dN~~fLe~lKFg~GdG~L~YYLyNwr~~~-i~gg~~~~~~~~~~~~~s~vG~Vll 227 (227)
T d1iyka2 174 DNTYFLKDCKFGSGDGFLNYYLFNYRTFP-MDGGIDKKTKEVVEDQTSGIGVVLL 227 (227)
T ss_dssp TGGGTTTTTTCEEEEEEEEEEEETCBCCC-CCCSBCTTTCCBCTTCCCSEECCCC
T ss_pred ccHHHHHHcCCccCCCcEEEEEEeccCCC-ccCccccccccccccCCCceeEEeC
Confidence 99999999999999999999999999975 5 4899999996
>d1rxta2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Human (Homo sapiens) [TaxId: 9606]}
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class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-myristoyl transferase, NMT
domain: N-myristoyl transferase, NMT
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.4e-57 Score=349.07 Aligned_cols=111 Identities=59% Similarity=1.033 Sum_probs=108.1
Q ss_pred CeeecCCCCccceeEEEeeccceeccCCCccceeeeeeEEEecCCCCHHHHHHHHHHHHHhCCCcEEeeeccccChhhhh
Q 046799 1 FLVASPETHEITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVSTKTPLLQLMNDALIVAKQKDFDVFNALDVMQNESFLK 80 (114)
Q Consensus 1 yVve~~~~~~itdf~SFY~Lpstvi~~~~~~~l~aAY~~Y~~~~~~~l~~L~~dali~Ak~~gfDVFNaL~im~N~~fL~ 80 (114)
||||+++ |+||||+|||+|||||++|++|++++|||+||+++|+++|++||+||||+||+.|||||||||+|+|++||+
T Consensus 90 yVve~~~-g~itDf~SFY~lpstvi~~~~~~~l~aAY~fY~~~~~~~l~~Li~Dali~Ak~~~fDVfNaL~i~dN~~fL~ 168 (201)
T d1rxta2 90 FVVENAN-GEVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLE 168 (201)
T ss_dssp EEECCSS-SCCCCEEEEECCCBCCCSCSSCCCCCBCCCCCEECSSSCTTTHHHHHHHHHHHTTCSBCCCCCCTTHHHHTT
T ss_pred EEEECCC-CcEeeEEEEEEcchhhhCCcccceeeeEEEEEEeecCCcHHHHHHHHHHHHHHcCCcEEEecchhcCHHHHH
Confidence 7999865 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCccceeEEEEeccCCccCCCCceeEEe
Q 046799 81 ELKFGPGDGKLHYYLYNYRIRQAVLASELGLVL 113 (114)
Q Consensus 81 ~lkF~~GdG~L~YYLyNw~~~~~i~~~~vglvl 113 (114)
+|||++|||.||||||||||| .|+|++||+||
T Consensus 169 ~lKFg~GdG~L~YYLyNw~~~-~i~p~~iglvl 200 (201)
T d1rxta2 169 KLKFGIGDGNLQYYLYNWKCP-SMGAEKVGIVL 200 (201)
T ss_dssp TSSCCCCSCCCEEEESSCCCC-CCCTTTBCCCC
T ss_pred HCCCccCCCcEEEEEEeccCC-CCCHHHceEEe
Confidence 999999999999999999996 59999999997
>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
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class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-myristoyl transferase, NMT
domain: N-myristoyl transferase, NMT
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-56 Score=352.65 Aligned_cols=112 Identities=48% Similarity=0.879 Sum_probs=106.8
Q ss_pred CeeecCCCCccceeEEEeeccceeccCCCccceeeeeeEEEecCC-----------------CCHHHHHHHHHHHHHhCC
Q 046799 1 FLVASPETHEITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVSTK-----------------TPLLQLMNDALIVAKQKD 63 (114)
Q Consensus 1 yVve~~~~~~itdf~SFY~Lpstvi~~~~~~~l~aAY~~Y~~~~~-----------------~~l~~L~~dali~Ak~~g 63 (114)
||||+++ |+||||+|||+||||||+|++|++|+|||+||+++++ ++|++||+||||+||+.|
T Consensus 96 YVve~~~-g~ITDF~SFY~Lpstvi~~~kh~~l~aAY~fYy~~~~~~~~~~~~~~~~~~a~k~~l~~Li~Dali~Ak~~~ 174 (237)
T d1iica2 96 YVVEQPD-GKITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCELIYDACILAKNAN 174 (237)
T ss_dssp EEEECTT-SCEEEEEEEEECCEEECSCSSCSEECEEEEEEEEECTTTTSSCTTSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCC-CcEeeEEEEEecchhhhCCCCcceEEEEEEEEEeeccccccccccchhhhhhhcchHHHHHHHHHHHHHHcC
Confidence 7999976 7999999999999999999999999999999999875 699999999999999999
Q ss_pred CcEEeeeccccChhhhhhcCCCCCccceeEEEEeccCCccC-------------CCCceeEEeC
Q 046799 64 FDVFNALDVMQNESFLKELKFGPGDGKLHYYLYNYRIRQAV-------------LASELGLVLL 114 (114)
Q Consensus 64 fDVFNaL~im~N~~fL~~lkF~~GdG~L~YYLyNw~~~~~i-------------~~~~vglvl~ 114 (114)
||||||||+|+|++||++|||++|||+|||||||||||+ | +|++||+|||
T Consensus 175 fDVFNaL~~mdN~~fLe~lKFg~GdG~L~YYLyNwr~~~-i~gg~~~~~~~~~~~~s~vG~Vll 237 (237)
T d1iica2 175 MDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKP-ITGGLNPDNSNDIKRRSNVGVVML 237 (237)
T ss_dssp CSEEEEESCTTGGGTTTTTTCEEEEEEEEEEEETEECCC-CCBSBCTTSSBCTTTCBCBCCCCC
T ss_pred CcEEEeccccccHHHHHHcCCccCCCcEEEEEEeccCCC-ccCCcCccccccccCccCeeEEeC
Confidence 999999999999999999999999999999999999975 5 5899999996
>d2fe7a1 d.108.1.1 (A:3-158) Probable N-acetyltransferase PA0478 {Pseudomonas aeruginosa [TaxId: 287]}
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class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-acetyl transferase, NAT
domain: Probable N-acetyltransferase PA0478
species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.87 E-value=2.2 Score=27.16 Aligned_cols=86 Identities=16% Similarity=0.135 Sum_probs=58.2
Q ss_pred eeecCCCCccceeEEEeeccceeccCCCccceeeeeeE-EEecCCCC----HHHHHHHHHHHHHhCCCcEEeeeccccCh
Q 046799 2 LVASPETHEITDFCSFYTLPSSILGNPNYSTLKAAYSY-YNVSTKTP----LLQLMNDALIVAKQKDFDVFNALDVMQNE 76 (114)
Q Consensus 2 Vve~~~~~~itdf~SFY~Lpstvi~~~~~~~l~aAY~~-Y~~~~~~~----l~~L~~dali~Ak~~gfDVFNaL~im~N~ 76 (114)
|+|. +|+|-.|+++...++.- ... ..+|.- .++....+ =++||..++..|++.|+.-......-+|+
T Consensus 53 va~~--~~~ivG~~~~~~~~~~~--~~~----~~~~i~~~~V~p~~Rg~GiG~~L~~~~~~~a~~~g~~~i~l~v~~~N~ 124 (156)
T d2fe7a1 53 MCLS--EGRPIGYAVFFYSYSTW--LGR----NGIYLEDLYVTPEYRGVGAGRRLLRELAREAVANDCGRLEWSVLDWNQ 124 (156)
T ss_dssp EEEE--TTEEEEEEEEEEEEETT--TTE----EEEEEEEEEECGGGCC--HHHHHHHHHHHHHHHTTCSEEEEEEETTCH
T ss_pred EEee--CCEEEEEEeEeeccccc--ccC----CeEEeeeeeechhhhccChHHHHHHHHHHHHHHccCCcceEEEcCCCH
Confidence 4554 46899999888765531 111 123321 22433222 34789999999999999999876666775
Q ss_pred ---hhhhhcCCCCCccceeEEE
Q 046799 77 ---SFLKELKFGPGDGKLHYYL 95 (114)
Q Consensus 77 ---~fL~~lkF~~GdG~L~YYL 95 (114)
.|-++++|.+-+....|.|
T Consensus 125 ~a~~~Y~k~GF~~~~~~~~~~l 146 (156)
T d2fe7a1 125 PAIDFYRSIGALPQDEWVRYRL 146 (156)
T ss_dssp HHHHHHHHTTCEECTTEEEEEE
T ss_pred HHHHHHHHCCCEEcCcEEEEEe
Confidence 5889999999888777655
>d2euia1 d.108.1.1 (A:1-153) Probable acetyltransferase PA4026 {Pseudomonas aeruginosa [TaxId: 287]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-acetyl transferase, NAT
domain: Probable acetyltransferase PA4026
species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.50 E-value=0.61 Score=29.38 Aligned_cols=83 Identities=19% Similarity=0.224 Sum_probs=57.2
Q ss_pred CCCccceeEEEeeccceeccCCCccceeeeeeEE-EecCCCC----HHHHHHHHHHHHHhCCCcEEeeeccccCh---hh
Q 046799 7 ETHEITDFCSFYTLPSSILGNPNYSTLKAAYSYY-NVSTKTP----LLQLMNDALIVAKQKDFDVFNALDVMQNE---SF 78 (114)
Q Consensus 7 ~~~~itdf~SFY~Lpstvi~~~~~~~l~aAY~~Y-~~~~~~~----l~~L~~dali~Ak~~gfDVFNaL~im~N~---~f 78 (114)
+.|+|-.|+.+...++. ...-+.+++.- .|....+ =..||+-++..||+.|+.-.-+...-+|. .|
T Consensus 56 ~~~~ivG~~~~~~~~~~------~~~~~~~~i~~~~V~~~~r~~Gig~~Ll~~~~~~ak~~g~~~i~l~~~~~N~~a~~~ 129 (153)
T d2euia1 56 EEDRLLGFCQLYPSFSS------LSLKRVWILNDIYVAEEARRQLVADHLLQHAKQMARETHAVRMRVSTSVDNEVAQKV 129 (153)
T ss_dssp SSCCEEEEEEEEEEEET------TTTEEEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTTEEEEEEEEETTCHHHHHH
T ss_pred cCCeEEEEEeeeccccc------ccccceEEecceeeeecccCcchhhHHHHHHhhhHHHhhhccceEEecCCCHHHHHH
Confidence 35678888776654332 11223455553 3433222 34689999999999999988877778887 48
Q ss_pred hhhcCCCCCccceeEEE
Q 046799 79 LKELKFGPGDGKLHYYL 95 (114)
Q Consensus 79 L~~lkF~~GdG~L~YYL 95 (114)
.++++|..-.-..+|||
T Consensus 130 Y~k~GF~~~~~~~~y~l 146 (153)
T d2euia1 130 YESIGFREDQEFKNYTL 146 (153)
T ss_dssp HHTTTCBCCCSBCCEEE
T ss_pred HHHCCCEEcceEEEEEe
Confidence 99999998777777775