Citrus Sinensis ID: 046822
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 971 | 2.2.26 [Sep-21-2011] | |||||||
| Q6DN14 | 999 | Multiple C2 and transmemb | yes | no | 0.119 | 0.116 | 0.376 | 6e-11 | |
| Q62770 | 2204 | Protein unc-13 homolog C | no | no | 0.121 | 0.053 | 0.330 | 9e-09 | |
| Q8K0T7 | 2210 | Protein unc-13 homolog C | no | no | 0.121 | 0.053 | 0.330 | 9e-09 | |
| Q5RJH2 | 878 | Multiple C2 and transmemb | no | no | 0.117 | 0.129 | 0.349 | 1e-08 | |
| Q6DN12 | 878 | Multiple C2 and transmemb | no | no | 0.338 | 0.374 | 0.228 | 1e-08 | |
| Q8NB66 | 2214 | Protein unc-13 homolog C | no | no | 0.121 | 0.053 | 0.330 | 1e-08 | |
| O14795 | 1591 | Protein unc-13 homolog B | no | no | 0.121 | 0.074 | 0.323 | 3e-08 | |
| Q9Z1N9 | 1602 | Protein unc-13 homolog B | no | no | 0.121 | 0.073 | 0.323 | 5e-08 | |
| Q62769 | 1622 | Protein unc-13 homolog B | no | no | 0.121 | 0.072 | 0.323 | 6e-08 | |
| Q9ZVT9 | 1020 | C2 and GRAM domain-contai | no | no | 0.155 | 0.148 | 0.325 | 1e-07 |
| >sp|Q6DN14|MCTP1_HUMAN Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens GN=MCTP1 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 64/125 (51%), Gaps = 9/125 (7%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAEL 67
L V+VI A LM D G S PF VE L T YK+LNP WN+ F++ DI +
Sbjct: 628 LQVKVIRAEGLMAADVTGKSDPFCVVELNNDRLLTHTVYKNLNPEWNKVFTFNIKDIHSV 687
Query: 68 PYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEIS 127
+EV V++E R S +FLGKV P + E +A Y L+ + L +G I
Sbjct: 688 ----LEVTVYDEDR-DRSADFLGKVAIPLLSIQNGEQKA----YVLKNKQLTGPTKGVIY 738
Query: 128 LKLFV 132
L++ V
Sbjct: 739 LEIDV 743
|
Homo sapiens (taxid: 9606) |
| >sp|Q62770|UN13C_RAT Protein unc-13 homolog C OS=Rattus norvegicus GN=Unc13c PE=1 SV=3 | Back alignment and function description |
|---|
Score = 63.2 bits (152), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 18/136 (13%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
K+ + V++A L KD GSS P+V V+ K RT+ + +LNP+W+EK F+ + +
Sbjct: 1211 KITITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTKTIFGNLNPVWDEKFYFECHNSTD 1270
Query: 67 LPYKHIEVNVFNERRSSNSR----------NFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116
I+V V++E SR +FLG+ L GE Y LEKR
Sbjct: 1271 ----RIKVRVWDEDDDIKSRVKQHFKKESDDFLGQTIVEVRTLS---GEMDV-WYNLEKR 1322
Query: 117 SLFSHIRGEISLKLFV 132
+ S + G I LK+ V
Sbjct: 1323 TDKSAVSGAIRLKINV 1338
|
May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses. Rattus norvegicus (taxid: 10116) |
| >sp|Q8K0T7|UN13C_MOUSE Protein unc-13 homolog C OS=Mus musculus GN=Unc13c PE=1 SV=3 | Back alignment and function description |
|---|
Score = 63.2 bits (152), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 18/136 (13%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
K+ + V++A L KD GSS P+V V+ K RT+ + +LNP+W+EK F+ + +
Sbjct: 1217 KITITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTKTIFGNLNPVWDEKFFFECHNSTD 1276
Query: 67 LPYKHIEVNVFNERRSSNSR----------NFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116
I+V V++E SR +FLG+ L GE Y LEKR
Sbjct: 1277 ----RIKVRVWDEDDDIKSRVKQHFKKESDDFLGQTIVEVRTLS---GEMDV-WYNLEKR 1328
Query: 117 SLFSHIRGEISLKLFV 132
+ S + G I LK+ V
Sbjct: 1329 TDKSAVSGAIRLKINV 1344
|
May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses. Mus musculus (taxid: 10090) |
| >sp|Q5RJH2|MCTP2_MOUSE Multiple C2 and transmembrane domain-containing protein 2 OS=Mus musculus GN=Mctp2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 9/123 (7%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAEL 67
L V+V+ A +L+ D G S PF +E L+T YK+LNP WN+ F + DI ++
Sbjct: 511 LQVKVLKASDLLAADFSGKSDPFCLLELGNDRLQTHTIYKNLNPEWNKVFTFPIKDIHDV 570
Query: 68 PYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEIS 127
+EV VF+E + +FLGKV P L +G+ Y L+ + L +G I
Sbjct: 571 ----LEVTVFDE-DGDKAPDFLGKVAIPL--LSIRDGQPNC--YVLKNKDLEQAFKGLIY 621
Query: 128 LKL 130
L+L
Sbjct: 622 LEL 624
|
Mus musculus (taxid: 10090) |
| >sp|Q6DN12|MCTP2_HUMAN Multiple C2 and transmembrane domain-containing protein 2 OS=Homo sapiens GN=MCTP2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 88/385 (22%), Positives = 157/385 (40%), Gaps = 56/385 (14%)
Query: 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWE 656
+G+L++ +L A L+ F G D +C+ + G ++T TV +L+P+WN+ +T+
Sbjct: 508 VGILQVKVLKAADLLAADF----SGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFP 563
Query: 657 VFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHP 716
+ D V+ V VFD + +GKV I L ++ + +
Sbjct: 564 IKDIHDVLEVTVFD---------EDGDKPPDFLGKVAIPLLSIRDGQPNCY--------- 605
Query: 717 SGVKKMGELHLAVRFSCANLVNMLHMYAMPLLPKMHYVHPLSVHQLETLRYQALNVVSSW 776
V K +L A F + M +Y P+ + P +E R + ++S
Sbjct: 606 --VLKNKDLEQA--FKGVIYLEMDLIYN-PVKASIRTFTPREKRFVEDSRKLSKKILSRD 660
Query: 777 LNRAEPPLGR--------ESMRNWHKPIYSTLSLAFFFLLVLMPEL-VIPAILLYLSLLG 827
++R + +S W + ST++ A F + V EL +IP LL + +
Sbjct: 661 VDRVKRITMAIWNTMQFLKSCFQWESTLRSTIAFAVFLITVWNFELYMIPLALLLIFVYN 720
Query: 828 LWRYRSRSRHPPHMDIRLSQADSVFPDELDEEFDSFPTSRGADIVRIRYDRLRSVAGRIQ 887
R P + Q D DEE + S ++ R ++ + +Q
Sbjct: 721 FIR-------PVKGKVSSIQDSQESTDIDDEEDEDDKESEKKGLIE-RIYMVQDIVSTVQ 772
Query: 888 TVVGDMATQGERFQALISWRDPRATFLFVIFCLFAAIGFYAVPVRVVFALSGVYVLRPPR 947
V+ ++A+ GER + +W P + L + A I Y +P+R + + G+ +
Sbjct: 773 NVLEEIASFGERIKNTFNWTVPFLSSLACLILAAATIILYFIPLRYIILIWGIN-----K 827
Query: 948 FRSKLPSP-------ALSFFRRLPS 965
F KL +P L F R+PS
Sbjct: 828 FTKKLRNPYSIDNNELLDFLSRVPS 852
|
Homo sapiens (taxid: 9606) |
| >sp|Q8NB66|UN13C_HUMAN Protein unc-13 homolog C OS=Homo sapiens GN=UNC13C PE=2 SV=3 | Back alignment and function description |
|---|
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 18/136 (13%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
K+ + V++A L KD GSS P+V V+ K RT+ + +LNP+W+EK F+ + +
Sbjct: 1221 KITITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTKTIFGNLNPVWDEKFYFECHNSTD 1280
Query: 67 LPYKHIEVNVFNERRSSNSR----------NFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116
I+V V++E SR +FLG+ L GE Y LEKR
Sbjct: 1281 ----RIKVRVWDEDDDIKSRVKQHFKKESDDFLGQTIVEVRTLS---GEMDV-WYNLEKR 1332
Query: 117 SLFSHIRGEISLKLFV 132
+ S + G I LK+ V
Sbjct: 1333 TDKSAVSGAIRLKINV 1348
|
May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses. Homo sapiens (taxid: 9606) |
| >sp|O14795|UN13B_HUMAN Protein unc-13 homolog B OS=Homo sapiens GN=UNC13B PE=1 SV=2 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 18/136 (13%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
K+ + V+ A L KD GSS P+V V+ K RT+ + +LNP+W EK F+ + ++
Sbjct: 601 KITITVVCAQGLQAKDKTGSSDPYVTVQVSKTKKRTKTIFGNLNPVWEEKFHFECHNSSD 660
Query: 67 LPYKHIEVNVFNE----------RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116
I+V V++E R S +FLG+ L GE Y LEKR
Sbjct: 661 ----RIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTIIEVRTL---SGEMDV-WYNLEKR 712
Query: 117 SLFSHIRGEISLKLFV 132
+ S + G I L++ V
Sbjct: 713 TDKSAVSGAIRLQISV 728
|
Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Is involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-depending refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in a subset of excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Homo sapiens (taxid: 9606) |
| >sp|Q9Z1N9|UN13B_MOUSE Protein unc-13 homolog B OS=Mus musculus GN=Unc13b PE=2 SV=2 | Back alignment and function description |
|---|
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 18/136 (13%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
K+ + V+ A L KD GSS P+V V+ K RT+ + +LNP+W EK F+ + ++
Sbjct: 613 KITITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIFGNLNPVWEEKFHFECHNSSD 672
Query: 67 LPYKHIEVNVFNE----------RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116
I+V V++E R S +FLG+ L GE Y LEKR
Sbjct: 673 ----RIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTIIEVRTL---SGEMDV-WYNLEKR 724
Query: 117 SLFSHIRGEISLKLFV 132
+ S + G I L++ V
Sbjct: 725 TDKSAVSGAIRLQISV 740
|
Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Is involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-depending refilling of readily releasable vesicle pool (RRP) (By similarity). Essential for synaptic vesicle maturation in a subset of excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Mus musculus (taxid: 10090) |
| >sp|Q62769|UN13B_RAT Protein unc-13 homolog B OS=Rattus norvegicus GN=Unc13b PE=1 SV=2 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 18/136 (13%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
K+ + V+ A L KD GSS P+V V+ K RT+ + +LNP+W EK F+ + ++
Sbjct: 614 KITITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIFGNLNPVWEEKFHFECHNSSD 673
Query: 67 LPYKHIEVNVFNE----------RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116
I+V V++E R S +FLG+ L GE Y LEKR
Sbjct: 674 ----RIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTIIEVRTL---SGEMDV-WYNLEKR 725
Query: 117 SLFSHIRGEISLKLFV 132
+ S + G I L++ V
Sbjct: 726 TDKSAVSGAIRLQINV 741
|
Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Is involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-depending refilling of readily releasable vesicle pool (RRP), Essential for synaptic vesicle maturation in a subset of excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Rattus norvegicus (taxid: 10116) |
| >sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 12/163 (7%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
KL V V+ A NL D G S P+V ++ KQ RT+V K+LNP W E F V D+ +
Sbjct: 2 KLQVRVVEARNLPAMDLNGFSDPYVRLQLGKQRSRTKVVKKNLNPKWTEDFSFGVDDLND 61
Query: 67 LPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQL-YTLE-KRSLFSHIRG 124
+ V+V +E + N +F+G+VR S + E ++ + Y L K+ G
Sbjct: 62 ----ELVVSVLDEDKYFND-DFVGQVRVSVSLVFDAENQSLGTVWYPLNPKKKGSKKDCG 116
Query: 125 EISLKLFVSTTEEVVKKGGFVSSLTPSSAFSKKNKKLQQQSPV 167
EI LK+ S V+ SS +SA ++ L+ +SP+
Sbjct: 117 EILLKICFSQKNSVLD---LTSSGDQTSA--SRSPDLRLESPI 154
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 971 | ||||||
| 224065513 | 1023 | predicted protein [Populus trichocarpa] | 0.994 | 0.944 | 0.720 | 0.0 | |
| 225437920 | 1012 | PREDICTED: uncharacterized protein LOC10 | 0.992 | 0.952 | 0.736 | 0.0 | |
| 147862894 | 1012 | hypothetical protein VITISV_009141 [Viti | 0.992 | 0.952 | 0.735 | 0.0 | |
| 15219665 | 1012 | C2 domain-containing protein [Arabidopsi | 0.970 | 0.930 | 0.625 | 0.0 | |
| 255585900 | 892 | conserved hypothetical protein [Ricinus | 0.714 | 0.778 | 0.774 | 0.0 | |
| 297744254 | 868 | unnamed protein product [Vitis vinifera] | 0.837 | 0.936 | 0.627 | 0.0 | |
| 115449609 | 999 | Os02g0816000 [Oryza sativa Japonica Grou | 0.971 | 0.943 | 0.577 | 0.0 | |
| 125541616 | 999 | hypothetical protein OsI_09434 [Oryza sa | 0.971 | 0.943 | 0.577 | 0.0 | |
| 242063490 | 997 | hypothetical protein SORBIDRAFT_04g03710 | 0.955 | 0.930 | 0.570 | 0.0 | |
| 413939471 | 1005 | hypothetical protein ZEAMMB73_855724 [Ze | 0.963 | 0.931 | 0.570 | 0.0 |
| >gi|224065513|ref|XP_002301834.1| predicted protein [Populus trichocarpa] gi|222843560|gb|EEE81107.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1486 bits (3848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 736/1021 (72%), Positives = 845/1021 (82%), Gaps = 55/1021 (5%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDI 64
KEKLVVEV+AAHNLMPKDGEGSSSPFVEVEFE Q LRTQVKYKDLNPIWN+KLVF + D+
Sbjct: 4 KEKLVVEVVAAHNLMPKDGEGSSSPFVEVEFENQRLRTQVKYKDLNPIWNQKLVFHIKDV 63
Query: 65 AELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRG 124
A+L Y+ IEVNVFNERRSSNSRNFLGKVR S + K +GE QL+TL+KRSLFSHIRG
Sbjct: 64 ADLSYRAIEVNVFNERRSSNSRNFLGKVRVSGSSVAK-QGEEVVQLHTLDKRSLFSHIRG 122
Query: 125 EISLKLFVSTTEEVVKKGGF-----VSSLTPSSAFSKKNKKLQQQSPVMQVQQQHFGHQD 179
EISLKL+VST EEV + GGF VSS SS SKKNKK QQQ+P++ Q Q +
Sbjct: 123 EISLKLYVSTREEVKEVGGFGNGEVVSSTPGSSNSSKKNKKTQQQNPLILQQPQQLSKEV 182
Query: 180 MMSKPTHQQQSQNHV--KPMEPNPGELKPVVITTAPRPVIPGARGGPTFGGGGGG----- 232
+ + Q+Q QN++ K +E NPG +KPVV TTA P + G G GG
Sbjct: 183 INNNKQAQEQGQNNINAKSVETNPGGIKPVVTTTALGPGSLVSSSGGGIVGPAGGAGLGG 242
Query: 233 -GVYVNGSGEFSLKETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDISLFGGGE 291
V+ NGS EFSLKETSPHLGGG LNKDKTSSTYDLVE MQYLYVRVVKA+ LFGGGE
Sbjct: 243 ISVHSNGSSEFSLKETSPHLGGGRLNKDKTSSTYDLVELMQYLYVRVVKAKYNMLFGGGE 302
Query: 292 IVAEVKLGNYRGITKRV-SSNHLQWDQVFAFSKDCIQSSAAEIFVKESDKDDFLGRIWFD 350
+VAEVKLGNYRG+TK+V S++++WDQVFAFSKDCIQSS E+FVK+ +KDD+LGR+WFD
Sbjct: 303 VVAEVKLGNYRGVTKKVIGSSNVEWDQVFAFSKDCIQSSMVEVFVKQGNKDDYLGRVWFD 362
Query: 351 LNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGTQADEAFAEAWHSKAANVH 410
LNEVPRRVPPDSQLAPQWYRMED++GD+SKGGE+MVSIWFGTQADEAFAEAWHSKAANVH
Sbjct: 363 LNEVPRRVPPDSQLAPQWYRMEDKKGDKSKGGELMVSIWFGTQADEAFAEAWHSKAANVH 422
Query: 411 FDGLCSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRI 470
F+G CS+KSKVYLSPKLWYLRV+VIEAQDIVPG+KG MMRFPEL K QVGNQ L+T+I
Sbjct: 423 FEGHCSIKSKVYLSPKLWYLRVAVIEAQDIVPGEKGLGMMRFPELFVKVQVGNQILRTKI 482
Query: 471 AAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRT 530
A P+ RS+ NP W+E+L+FVVAEPFED+L +SVED VGPG++E VG+V++PV+A+ERR
Sbjct: 483 AGPNPNRSMINPYWSEELMFVVAEPFEDFLFLSVEDRVGPGREEAVGRVMLPVAAIERRH 542
Query: 531 DDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEATLYSSDVKPTAK 590
DDKQVVSRWFNL+N FG+ ESK+VTRFGS+IHLR+SLDGGYHVLDE+T+YSSDV+PTAK
Sbjct: 543 DDKQVVSRWFNLDNQFGSAVESKLVTRFGSKIHLRLSLDGGYHVLDESTMYSSDVRPTAK 602
Query: 591 QLWKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWN 650
QLWKPHIGVLEMGILGATGLMP K KEGK S+DAYCVAKYGQKWVRTRTVVDS SPKWN
Sbjct: 603 QLWKPHIGVLEMGILGATGLMPTKLKEGKRESIDAYCVAKYGQKWVRTRTVVDSFSPKWN 662
Query: 651 EQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYP 710
EQYTWEVFDPCTVITVGVFDNC DKN+ NN+G RDSRIGKVR+RLSTLESDRVYTHSYP
Sbjct: 663 EQYTWEVFDPCTVITVGVFDNCRTDKNVFNNTGARDSRIGKVRVRLSTLESDRVYTHSYP 722
Query: 711 LLMLHPSGVKKMGELHLAVRFSCANLVNMLHMYAMPLLPKMHYVHPLSVHQLETLRYQAL 770
LL+LH +GVKKMGELHLAVRFSCAN+ NMLHMY +PLLP+MHYVHPLSV+QL+ +RYQA+
Sbjct: 723 LLVLHTTGVKKMGELHLAVRFSCANMANMLHMYTLPLLPQMHYVHPLSVNQLDAMRYQAM 782
Query: 771 NVVSSWLNRAEPPLGR----------------------------------------ESMR 790
NVV+S L+RAEPPLGR ESMR
Sbjct: 783 NVVASRLSRAEPPLGREVVEYMLDHDSHMWSMRRSKANFARLISVLSVFVAMARWVESMR 842
Query: 791 NWHKPIYSTLSLAFFFLLVLMPELVIPAILLYLSLLGLWRYRSRSRHPPHMDIRLSQADS 850
NWHKP+YSTL + F L V MPEL+IP++LLY++ +GLWRYR+R RHPPHMD +LS S
Sbjct: 843 NWHKPVYSTLFVLAFLLWVAMPELIIPSLLLYMAFVGLWRYRTRPRHPPHMDTKLSHVVS 902
Query: 851 VFPDELDEEFDSFPTSRGADIVRIRYDRLRSVAGRIQTVVGDMATQGERFQALISWRDPR 910
V+ DELDEEFDSFPTSR A+ VR+RYDRLRSVAGRIQTVVGDMA+QGERFQAL+ WRDPR
Sbjct: 903 VYSDELDEEFDSFPTSRSAETVRMRYDRLRSVAGRIQTVVGDMASQGERFQALLGWRDPR 962
Query: 911 ATFLFVIFCLFAAIGFYAVPVRVVFALSGVYVLRPPRFRSKLPSPALSFFRRLPSKADTL 970
ATFLFV+ CLFAA+GFYAVP+RVV AL G+YV+RPP+FR+KLP ALSFFRRLP+KAD+L
Sbjct: 963 ATFLFVVMCLFAAVGFYAVPIRVVVALWGLYVMRPPKFRNKLPPRALSFFRRLPTKADSL 1022
Query: 971 L 971
L
Sbjct: 1023 L 1023
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437920|ref|XP_002268191.1| PREDICTED: uncharacterized protein LOC100246307 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1472 bits (3811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 742/1008 (73%), Positives = 842/1008 (83%), Gaps = 44/1008 (4%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDI 64
KEKLVVEV+AAHNLMPKDGEGS SPFVEVEFE Q LRTQVKYKDLNP+W+EKLVF V D+
Sbjct: 8 KEKLVVEVVAAHNLMPKDGEGSCSPFVEVEFENQRLRTQVKYKDLNPVWSEKLVFHVKDV 67
Query: 65 AELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRG 124
A+LPY+ IE+NVFNE+RSSNSRNFLGKVR + + K EGE AQLYTL+KRSLFSHIRG
Sbjct: 68 ADLPYRTIEINVFNEKRSSNSRNFLGKVRVSGTSIAK-EGEEVAQLYTLDKRSLFSHIRG 126
Query: 125 EISLKLFVSTTEEVVK-KGGFVSSLTPSSAFSKKNKKLQQQSPVMQVQQQHFGHQDMMSK 183
EISLK ++ST E V + G + SS+ SKKNKKLQQQ P M QQQ D +K
Sbjct: 127 EISLKFYLSTKEAVKEVTSGDAAVSGSSSSSSKKNKKLQQQGPAMARQQQQQMAPDNNNK 186
Query: 184 PTHQQQSQNHVKPMEPNPGELKPVVITTAPRPVIPGARGGPTFGGGGGGGVYVNGSGEFS 243
P+ QQ+Q H KP P PG++KPVVITT P IPG GG G GG V+ GS EFS
Sbjct: 187 PS--QQTQQHAKPGGPKPGDIKPVVITTGHAPAIPGPGGGVPAGVGGLRNVFSGGSNEFS 244
Query: 244 LKETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDISLFGGGEIVAEVKLGNYRG 303
LKETSPHLGGG L++DKTSSTYDLVEQMQYLYVR++K RD+S GGGE++AEVKLGNYRG
Sbjct: 245 LKETSPHLGGGLLHRDKTSSTYDLVEQMQYLYVRILKCRDVSASGGGEVMAEVKLGNYRG 304
Query: 304 ITKRVSSNHLQWDQVFAFSKDCIQSSAAEIFVKESDKDDFLGRIWFDLNEVPRRVPPDSQ 363
ITKRVS+N+ +W QVFAFSKDCIQSS AEIFVKE DKD+FLGR+WFDLNEVPRRVPPDSQ
Sbjct: 305 ITKRVSANNPEWGQVFAFSKDCIQSSVAEIFVKEKDKDEFLGRVWFDLNEVPRRVPPDSQ 364
Query: 364 LAPQWYRMEDRRGDRSKGGEVMVSIWFGTQADEAFAEAWHSKAANVHFDGLCSLKSKVYL 423
LA QW+RMED++GD+SK GEVMVSIWFGTQADEAFAEAWHSKAANVHFDGL S+KSKVYL
Sbjct: 365 LASQWHRMEDKKGDKSKAGEVMVSIWFGTQADEAFAEAWHSKAANVHFDGLSSIKSKVYL 424
Query: 424 SPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPC 483
SPKLWY RV++IEAQDIVPG+KG++M++FPEL KAQVGNQ +TRIA S +RSLSNP
Sbjct: 425 SPKLWYFRVTIIEAQDIVPGEKGASMVKFPELSVKAQVGNQVFRTRIAQASPSRSLSNPY 484
Query: 484 WNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLE 543
WNEDL+FVVAEPFEDYLL+SVED V PG+DE+VG+VL+PV+A+ERRTDDK V SRWFNL+
Sbjct: 485 WNEDLMFVVAEPFEDYLLVSVEDRVAPGRDEVVGRVLLPVTAIERRTDDKAVTSRWFNLD 544
Query: 544 NHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEATLYSSDVKPTAKQLWKPHIGVLEMG 603
NH GN GE K+V+RFGSRIHLRVSL+GGYHVLDEAT+YSSDV+PTAKQLWKPHIGVLE+G
Sbjct: 545 NHLGNAGEPKIVSRFGSRIHLRVSLEGGYHVLDEATMYSSDVRPTAKQLWKPHIGVLEIG 604
Query: 604 ILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTV 663
ILGATGL+P+K KEGKGGS D+YCVAKYG KWVRTRTVVDSLSPKWNEQYTWEVFDPCTV
Sbjct: 605 ILGATGLIPIKLKEGKGGSTDSYCVAKYGHKWVRTRTVVDSLSPKWNEQYTWEVFDPCTV 664
Query: 664 ITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMG 723
ITVGVFDN +DKN N G RDSRIGKVRIRLSTLESDRVYTHSYPLLMLH SGVKKMG
Sbjct: 665 ITVGVFDNSRVDKNTTNAGGYRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHTSGVKKMG 724
Query: 724 ELHLAVRFSCANLVNMLHMYAMPLLPKMHYVHPLSVHQLETLRYQALNVVSSWLNRAEPP 783
ELHLAVRFSCAN+ NML +Y +PLLPKMHYVHPLSV+QL++LRYQA+NVV+S L+RAEP
Sbjct: 725 ELHLAVRFSCANMGNMLSIYTLPLLPKMHYVHPLSVNQLDSLRYQAMNVVASRLSRAEPA 784
Query: 784 LGR----------------------------------------ESMRNWHKPIYSTLSLA 803
LGR ESMRNW+KP+YST+ +
Sbjct: 785 LGREVVEYMLDHDSHMWSMRRSKANFFRLMSVLSSFVAMGRFVESMRNWNKPVYSTIFMM 844
Query: 804 FFFLLVLMPELVIPAILLYLSLLGLWRYRSRSRHPPHMDIRLSQADSVFPDELDEEFDSF 863
F +LV PEL+IP +LLY++ +G+WRYRSR R PPHMD RLS A++V+PDELDEEFDSF
Sbjct: 845 IFLVLVSFPELIIPLLLLYMAFVGIWRYRSRPRQPPHMDTRLSHAETVYPDELDEEFDSF 904
Query: 864 PTSRGADIVRIRYDRLRSVAGRIQTVVGDMATQGERFQALISWRDPRATFLFVIFCLFAA 923
PTSR A+IVR+RYDRLRSVAGRIQTVVGDMA+QGERFQAL+SWRDPRATFLFV FCLFAA
Sbjct: 905 PTSRSAEIVRMRYDRLRSVAGRIQTVVGDMASQGERFQALLSWRDPRATFLFVNFCLFAA 964
Query: 924 IGFYAVPVRVVFALSGVYVLRPPRFRSKLPSPALSFFRRLPSKADTLL 971
+GFY VP + V AL G+YVLRPP+FRSKLPS ALSFFRRLP+KAD+ L
Sbjct: 965 VGFYLVPTKAVVALWGLYVLRPPKFRSKLPSRALSFFRRLPTKADSFL 1012
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147862894|emb|CAN83208.1| hypothetical protein VITISV_009141 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1471 bits (3808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 741/1008 (73%), Positives = 842/1008 (83%), Gaps = 44/1008 (4%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDI 64
KEKLVVEV+AAHNLMPKDGEGS SPFVEVEFE Q LRTQVKYKDLNP+W+EKL F V D+
Sbjct: 8 KEKLVVEVVAAHNLMPKDGEGSCSPFVEVEFENQRLRTQVKYKDLNPVWSEKLXFHVKDV 67
Query: 65 AELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRG 124
A+LPY+ IE+NVFNE+RSSNSRNFLGKVR + + K EGE AQLYTL+KRSLFSHIRG
Sbjct: 68 ADLPYRTIEINVFNEKRSSNSRNFLGKVRVSGTSIAK-EGEEVAQLYTLDKRSLFSHIRG 126
Query: 125 EISLKLFVSTTEEVVK-KGGFVSSLTPSSAFSKKNKKLQQQSPVMQVQQQHFGHQDMMSK 183
EISLK ++ST E V + G + SS+ SKKNKKLQQQ P M QQQ D +K
Sbjct: 127 EISLKFYLSTKEAVKEVTSGDAAVSGSSSSSSKKNKKLQQQGPAMARQQQQQMAPDNNNK 186
Query: 184 PTHQQQSQNHVKPMEPNPGELKPVVITTAPRPVIPGARGGPTFGGGGGGGVYVNGSGEFS 243
P+ QQ+Q H KP P PG++KPVVITT P IPG GG G GG V+ GS EFS
Sbjct: 187 PS--QQTQQHAKPGGPKPGDIKPVVITTGHAPAIPGPGGGVPAGVGGLRNVFSGGSNEFS 244
Query: 244 LKETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDISLFGGGEIVAEVKLGNYRG 303
LKETSPHLGGG L++DKTSSTYDLVEQMQYLYVR++K RD+S GGGE++AEVKLGNYRG
Sbjct: 245 LKETSPHLGGGLLHRDKTSSTYDLVEQMQYLYVRILKCRDVSASGGGEVMAEVKLGNYRG 304
Query: 304 ITKRVSSNHLQWDQVFAFSKDCIQSSAAEIFVKESDKDDFLGRIWFDLNEVPRRVPPDSQ 363
ITKRVS+N+ +W QVFAFSKDCIQSS AEIFVKE DKD+FLGR+WFDLNEVPRRVPPDSQ
Sbjct: 305 ITKRVSANNPEWGQVFAFSKDCIQSSVAEIFVKEKDKDEFLGRVWFDLNEVPRRVPPDSQ 364
Query: 364 LAPQWYRMEDRRGDRSKGGEVMVSIWFGTQADEAFAEAWHSKAANVHFDGLCSLKSKVYL 423
LA QW+RMED++GD+SK GEVMVSIWFGTQADEAFAEAWHSKAANVHFDGL S+KSKVYL
Sbjct: 365 LASQWHRMEDKKGDKSKAGEVMVSIWFGTQADEAFAEAWHSKAANVHFDGLSSIKSKVYL 424
Query: 424 SPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPC 483
SPKLWY RV++IEAQDIVPG+KG++M++FPEL KAQVGNQ +TRIA S +RSLSNP
Sbjct: 425 SPKLWYFRVTIIEAQDIVPGEKGASMVKFPELSVKAQVGNQVFRTRIAQASPSRSLSNPY 484
Query: 484 WNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLE 543
WNEDL+FVVAEPFEDYLL+SVED V PG+DE+VG+VL+PV+A+ERRTDDK V SRWFNL+
Sbjct: 485 WNEDLMFVVAEPFEDYLLVSVEDRVAPGRDEVVGRVLLPVTAIERRTDDKAVTSRWFNLD 544
Query: 544 NHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEATLYSSDVKPTAKQLWKPHIGVLEMG 603
NH GN GE K+V+RFGSRIHLRVSL+GGYHVLDEAT+YSSDV+PTAKQLWKPHIGVLE+G
Sbjct: 545 NHLGNAGEPKIVSRFGSRIHLRVSLEGGYHVLDEATMYSSDVRPTAKQLWKPHIGVLEIG 604
Query: 604 ILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTV 663
ILGATGL+P+K KEGKGGS D+YCVAKYG KWVRTRTVVDSLSPKWNEQYTWEVFDPCTV
Sbjct: 605 ILGATGLIPIKLKEGKGGSTDSYCVAKYGHKWVRTRTVVDSLSPKWNEQYTWEVFDPCTV 664
Query: 664 ITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMG 723
ITVGVFDN +DKN N G RDSRIGKVRIRLSTLESDRVYTHSYPLLMLH SGVKKMG
Sbjct: 665 ITVGVFDNSRVDKNTTNAGGYRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHTSGVKKMG 724
Query: 724 ELHLAVRFSCANLVNMLHMYAMPLLPKMHYVHPLSVHQLETLRYQALNVVSSWLNRAEPP 783
ELHLAVRFSCAN+ NML +Y++ LLPKMHYVHPLSV+QL++LRYQA+NVV+S L+RAEPP
Sbjct: 725 ELHLAVRFSCANMGNMLSIYSLXLLPKMHYVHPLSVNQLDSLRYQAMNVVASRLSRAEPP 784
Query: 784 LGR----------------------------------------ESMRNWHKPIYSTLSLA 803
LGR ESMRNW+KP+YST+ +
Sbjct: 785 LGREVVEYMLDHDSHMWSMRRSKANFFRLMSVLSSFVAMGRFVESMRNWNKPVYSTIFMM 844
Query: 804 FFFLLVLMPELVIPAILLYLSLLGLWRYRSRSRHPPHMDIRLSQADSVFPDELDEEFDSF 863
F +LV PEL+IP +LLY++ +G+WRYRSR R PPHMD RLS A++V+PDELDEEFDSF
Sbjct: 845 IFLVLVSFPELIIPLLLLYMAFVGIWRYRSRPRQPPHMDTRLSHAETVYPDELDEEFDSF 904
Query: 864 PTSRGADIVRIRYDRLRSVAGRIQTVVGDMATQGERFQALISWRDPRATFLFVIFCLFAA 923
PTSR A+IVR+RYDRLRSVAGRIQTVVGDMA+QGERFQAL+SWRDPRATFLFV FCLFAA
Sbjct: 905 PTSRSAEIVRMRYDRLRSVAGRIQTVVGDMASQGERFQALLSWRDPRATFLFVNFCLFAA 964
Query: 924 IGFYAVPVRVVFALSGVYVLRPPRFRSKLPSPALSFFRRLPSKADTLL 971
+GFY VP + V AL G+YVLRPP+FRSKLPS ALSFFRRLP+KAD+ L
Sbjct: 965 VGFYLVPTKAVVALWGLYVLRPPKFRSKLPSRALSFFRRLPTKADSFL 1012
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15219665|ref|NP_171911.1| C2 domain-containing protein [Arabidopsis thaliana] gi|3142295|gb|AAC16746.1| Strong similarity to phosphoribosylanthranilate transferase gb|D86180 from Pisum sativum [Arabidopsis thaliana] gi|332189542|gb|AEE27663.1| C2 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1239 bits (3207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 647/1034 (62%), Positives = 778/1034 (75%), Gaps = 92/1034 (8%)
Query: 2 GDGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDV 61
G G E+LVVE++ AHNLMPKDGE SSSPFVEV+FE Q LRT+VK KDLNPIWNEKLVF V
Sbjct: 7 GTGNERLVVEIVGAHNLMPKDGEDSSSPFVEVQFENQRLRTKVKPKDLNPIWNEKLVFHV 66
Query: 62 PDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSH 121
D+ +L +K +E+NV+NE+RSSNSRNFLGKVR S + + EGE+ QLYTLEKRSLFS
Sbjct: 67 IDVNDLRHKALEINVYNEKRSSNSRNFLGKVRVLGSSVGR-EGESVVQLYTLEKRSLFSS 125
Query: 122 IRGEISLKLFVSTTEEVVKKGGFVSSLTPSSAFSKKNKKLQQQSPVMQVQQQHFGHQDMM 181
+RGEIS+K +++TT E G V + S SKK+KK+Q S M +QQQ Q +
Sbjct: 126 VRGEISVKHYMTTTAE---NGENVRRVNRSGG-SKKSKKVQNVSSSMAIQQQQQQQQQQI 181
Query: 182 SKPTHQQQSQNHVK---------PMEPNPGELKPVVITTAPRPVIPGARGGPTFGGGGGG 232
S H + +Q + P P+ E+KP+VIT P P +PG P
Sbjct: 182 SLHNHNRGNQQQSQQNGQGQRMLPFYPHQSEIKPLVITALPSP-MPGPGPRPI------- 233
Query: 233 GVYVNGSGEFSLKETSPHLGG-----GPLN--KDKTSSTYDLVEQMQYLYVRVVKARDIS 285
VY NGS EFSLKET P LGG G L+ KDKTSSTYDLVEQMQYLYV +VKA+D+S
Sbjct: 234 -VYSNGSSEFSLKETKPCLGGTSNGLGGLSSHKDKTSSTYDLVEQMQYLYVNIVKAKDLS 292
Query: 286 LFGGGEIVAEVKLGNYRGITKRVSSN--HLQWDQVFAFSKDCIQSSAAEIFVKESDKDDF 343
+ G E+V+EVKLGNYRG+TK+VSSN + +W+QVF FSK+ IQSS E+FVKE +KD++
Sbjct: 293 VLG--EVVSEVKLGNYRGVTKKVSSNSSNPEWNQVFVFSKERIQSSVVELFVKEGNKDEY 350
Query: 344 LGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGTQADEAFAEAWH 403
GR+ FDL+E+P RVPPDS LAPQWY++E+R G R G E+MVS+WFGTQADEAFAEAWH
Sbjct: 351 TGRVLFDLSEIPTRVPPDSPLAPQWYKIENRNGGRGNG-ELMVSVWFGTQADEAFAEAWH 409
Query: 404 SKAANVHFDGLCSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGN 463
SKA NVH + L S+KSKVYLSPKLWYLR+SVIEAQD+ DKGS++MRFPEL AK QVG+
Sbjct: 410 SKAGNVHIEELSSIKSKVYLSPKLWYLRISVIEAQDVAIMDKGSSLMRFPELSAKLQVGS 469
Query: 464 QFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDH-----VGPGKDEIVGK 518
Q L+T IA+ T+S SNP WNEDL+FVVAEPFED + + VED +G D VG+
Sbjct: 470 QILRTAIASAIPTKSFSNPYWNEDLMFVVAEPFEDCVTVVVEDRLNGGAIGGQNDVAVGR 529
Query: 519 VLIPVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEA 578
V IP+SAVERRT D V SRWF+L+N N RFGSRIHLR+SLDGGYHVLDEA
Sbjct: 530 VQIPISAVERRTGDTLVGSRWFSLDNGNNNN-------RFGSRIHLRLSLDGGYHVLDEA 582
Query: 579 TLYSSDVKPTAKQLWKPHIGVLEMGILGATGLMPMKFKEGK-GGSVDAYCVAKYGQKWVR 637
T+Y+SDV+PTAK+LWKP +G+LE+GIL ATGLMPMK ++GK GG D+YCVAKYG KWVR
Sbjct: 583 TMYNSDVRPTAKELWKPQVGLLEIGILSATGLMPMKVRDGKCGGIADSYCVAKYGPKWVR 642
Query: 638 TRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLS 697
TRTVVDSL PKWNEQYTWEV+DPCTV+TVGVFDN +++N NNS RD RIGKVRIRLS
Sbjct: 643 TRTVVDSLCPKWNEQYTWEVYDPCTVVTVGVFDNARVNEN--NNS--RDVRIGKVRIRLS 698
Query: 698 TLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSCANLVNMLHMYAMPLLPKMHYVHPL 757
TLE+ RVYTHSYPL++LHPSGVKK GELHLAVR SC N VNMLHMYA+PLLPKMHY PL
Sbjct: 699 TLETGRVYTHSYPLIVLHPSGVKKTGELHLAVRLSCGNAVNMLHMYALPLLPKMHYTQPL 758
Query: 758 SVHQLETLRYQALNVVSSWLNRAEPPLGR------------------------------- 786
VH LE LRYQ LN V++ L+RAEPPLGR
Sbjct: 759 GVHMLERLRYQTLNAVAARLSRAEPPLGREVVEYMLDHDFHVWSMRRSKANFFRLVNVIS 818
Query: 787 ---------ESMRNWHKPIYSTLSLAFFFLLVLMPELVIPAILLYLSLLGLWRYRSRSRH 837
E MR+W KP+YST+ + F +VL PEL++P +LLY + +G+WR+R RSR+
Sbjct: 819 GLVAVAKLVEVMRSWSKPVYSTVFVLAFLFMVLFPELLLPCLLLYTAAVGVWRFRRRSRY 878
Query: 838 PPHMDIRLSQADSVFPDELDEEFDSFPTSRGADIVRIRYDRLRSVAGRIQTVVGDMATQG 897
PPHMD R+S A++VFPDELDEEFD+FPTSRG D+VR+RYDR+RS+AGR+QTVVGDMA+QG
Sbjct: 879 PPHMDARISHAETVFPDELDEEFDTFPTSRGFDVVRMRYDRVRSIAGRVQTVVGDMASQG 938
Query: 898 ERFQALISWRDPRATFLFVIFCLFAAIGFYAVPVRVVFALSGVYVLRPPRFRSKLPSPAL 957
ER QAL+SWRDPRATFLF++FCL AA+GFY VPV++ A+SG+Y LRPPRFR KLPS L
Sbjct: 939 ERVQALLSWRDPRATFLFLMFCLLAAVGFYTVPVKLTVAISGLYYLRPPRFRRKLPSRGL 998
Query: 958 SFFRRLPSKADTLL 971
SFFRRLPS+AD+LL
Sbjct: 999 SFFRRLPSRADSLL 1012
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255585900|ref|XP_002533623.1| conserved hypothetical protein [Ricinus communis] gi|223526481|gb|EEF28752.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1191 bits (3082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/735 (77%), Positives = 638/735 (86%), Gaps = 41/735 (5%)
Query: 278 VVKARDISLFGGGEIVAEVKLGNYRGITKRVSSNHLQWDQVFAFSKDCIQSSAAEIFVKE 337
+VKA++I LFGGGEIV EVKLGNYRGITK+V S++++W QVFAFSKDCIQSS EIFVKE
Sbjct: 158 IVKAKEIMLFGGGEIVVEVKLGNYRGITKKVGSSNMEWGQVFAFSKDCIQSSMVEIFVKE 217
Query: 338 SDKDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGTQADEA 397
+KDDFLGR+WFDLNEVPRRVPPDSQLAPQWYRMED++GD+SKGGEVMVSIWFGTQADEA
Sbjct: 218 GNKDDFLGRVWFDLNEVPRRVPPDSQLAPQWYRMEDKKGDKSKGGEVMVSIWFGTQADEA 277
Query: 398 FAEAWHSKAANVHFDGLCSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHA 457
FAEAWHSK ANVHFDGLCS+KSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPEL A
Sbjct: 278 FAEAWHSKTANVHFDGLCSIKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELFA 337
Query: 458 KAQVGNQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVG 517
K VGNQ L+T+IA P+ TRS+SNP WNEDLLFVVAEPFED L++SVED +GPG++E VG
Sbjct: 338 KVLVGNQVLRTKIAGPNPTRSMSNPYWNEDLLFVVAEPFEDCLVVSVEDRIGPGREEAVG 397
Query: 518 KVLIPVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDE 577
+VL+P++ +ERR DDKQVVSRWFNL+NHFG+ ESK++TRFGSRIHLR+SLDGGYHVLDE
Sbjct: 398 RVLLPMTVIERRHDDKQVVSRWFNLDNHFGSAVESKIITRFGSRIHLRMSLDGGYHVLDE 457
Query: 578 ATLYSSDVKPTAKQLWKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVR 637
AT+YSSDVKPTAKQLWKPHIGVLEMGILGA+GLMP K KEGK S DAYCVAKYGQKWVR
Sbjct: 458 ATMYSSDVKPTAKQLWKPHIGVLEMGILGASGLMPTKLKEGKRESADAYCVAKYGQKWVR 517
Query: 638 TRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINN-SGGRDSRIGKVRIRL 696
TRTVVDSLSPKWNEQYTWEVFDPCTVIT+GVFDNC +DK +N+ S RDSRIGKVRIRL
Sbjct: 518 TRTVVDSLSPKWNEQYTWEVFDPCTVITIGVFDNCLVDKIAVNHASAARDSRIGKVRIRL 577
Query: 697 STLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSCANLVNMLHMYAMPLLPKMHYVHP 756
STLE+DRVYTHSYPLLMLHP+GVKKMGELHLAVRFSCAN+ NM HMY +PLLPKMHYV P
Sbjct: 578 STLETDRVYTHSYPLLMLHPTGVKKMGELHLAVRFSCANMGNMFHMYTLPLLPKMHYVQP 637
Query: 757 LSVHQLETLRYQALNVVSSWLNRAEPPLGR------------------------------ 786
LSV+QLE LRYQA+NVV+S L+R+EPPLGR
Sbjct: 638 LSVNQLEILRYQAMNVVASRLSRSEPPLGREVVEYMLDHDSHMWSMRRSKANFARLINVL 697
Query: 787 ----------ESMRNWHKPIYSTLSLAFFFLLVLMPELVIPAILLYLSLLGLWRYRSRSR 836
ES+RNWHKP+YSTL L F LLV MPEL+IPA LL+++++GLWRYRSR R
Sbjct: 698 SAIMAIGRWLESIRNWHKPVYSTLFLLIFLLLVAMPELIIPATLLHMAIVGLWRYRSRPR 757
Query: 837 HPPHMDIRLSQADSVFPDELDEEFDSFPTSRGADIVRIRYDRLRSVAGRIQTVVGDMATQ 896
HPPHMD RLS A SV+PDELDEEFDSFPTSR A++VR+RYDRLRSVAGRIQTVVGDMATQ
Sbjct: 758 HPPHMDTRLSHAQSVYPDELDEEFDSFPTSRSAEMVRMRYDRLRSVAGRIQTVVGDMATQ 817
Query: 897 GERFQALISWRDPRATFLFVIFCLFAAIGFYAVPVRVVFALSGVYVLRPPRFRSKLPSPA 956
GER QAL+SWRDPRATFLFVI CLFAA+G YAVP+RVV AL G+Y+LRPPRFR+KLP A
Sbjct: 818 GERVQALLSWRDPRATFLFVIMCLFAAVGCYAVPIRVVVALWGLYMLRPPRFRNKLPCRA 877
Query: 957 LSFFRRLPSKADTLL 971
L+FFRRLP+KAD+LL
Sbjct: 878 LNFFRRLPAKADSLL 892
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744254|emb|CBI37224.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1179 bits (3050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/1000 (62%), Positives = 714/1000 (71%), Gaps = 187/1000 (18%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDI 64
KEKLVVEV+AAHNLMPKDGEGS SPFVEVEFE Q LRTQVKYKDLNP+W+EKLVF V D+
Sbjct: 8 KEKLVVEVVAAHNLMPKDGEGSCSPFVEVEFENQRLRTQVKYKDLNPVWSEKLVFHVKDV 67
Query: 65 AELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRG 124
A+LPY+ IE+NVFNE+RSSNSRNFLGKVR + + K EGE AQLYTL+KRSLFSHIRG
Sbjct: 68 ADLPYRTIEINVFNEKRSSNSRNFLGKVRVSGTSIAK-EGEEVAQLYTLDKRSLFSHIRG 126
Query: 125 EISLKLFVSTTEEVVK-KGGFVSSLTPSSAFSKKNKKLQQQSPVMQVQQQHFGHQDMMSK 183
EISLK ++ST E V + G + SS+ SKKNKKLQQQ P M QQQ D +K
Sbjct: 127 EISLKFYLSTKEAVKEVTSGDAAVSGSSSSSSKKNKKLQQQGPAMARQQQQQMAPDNNNK 186
Query: 184 PTHQQQSQNHVKPMEPNPGELKPVVITTAPRPVIPGARGGPTFGGGGGGGVYVNGSGEFS 243
P+ QQ+Q H KP P PG++KPVVITT P IPG GG FS
Sbjct: 187 PS--QQTQQHAKPGGPKPGDIKPVVITTGHAPAIPGPGGG------------------FS 226
Query: 244 LKETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDISLFGGGEIVAEVKLGNYRG 303
LKETSPHLGGG L++DKTSSTYDLVEQMQYLYVR++K RD+S GGGE++AEVKLGNYRG
Sbjct: 227 LKETSPHLGGGLLHRDKTSSTYDLVEQMQYLYVRILKCRDVSASGGGEVMAEVKLGNYRG 286
Query: 304 ITKRVSSNHLQWDQVFAFSKDCIQSSAAEIFVKESDKDDFLGRIWFDLNEVPRRVPPDSQ 363
ITKRVS+N+ +W QVFAFSKDCIQSS AEIFVKE DKD+FLGR+WFDLNEVPRRVPPDSQ
Sbjct: 287 ITKRVSANNPEWGQVFAFSKDCIQSSVAEIFVKEKDKDEFLGRVWFDLNEVPRRVPPDSQ 346
Query: 364 LAPQWYRMEDRRGDRSKGGEVMVSIWFGTQADEAFAEAWHSKAANVHFDGLCSLKSKVYL 423
LA QW+RMED++GD+SK GEVMVSIWFGTQADEAFAEAWHSKAANVHFDGL S+KSKVYL
Sbjct: 347 LASQWHRMEDKKGDKSKAGEVMVSIWFGTQADEAFAEAWHSKAANVHFDGLSSIKSKVYL 406
Query: 424 SPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPC 483
SPKLWY RV++IEAQDIVPG+KG++M
Sbjct: 407 SPKLWYFRVTIIEAQDIVPGEKGASM---------------------------------- 432
Query: 484 WNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLE 543
PFEDYLL+SVED V PG+DE+VG+VL+PV+A+ERRTDDK V SR
Sbjct: 433 -----------PFEDYLLVSVEDRVAPGRDEVVGRVLLPVTAIERRTDDKAVTSR----- 476
Query: 544 NHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEATLYSSDVKPTAKQLWKPHIGVLEMG 603
DV+PTAKQLWKPHIGVLE+G
Sbjct: 477 ----------------------------------------DVRPTAKQLWKPHIGVLEIG 496
Query: 604 ILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTV 663
ILGATGL+P+K KEGKGGS D+YCVAKYG KWVRTRTV
Sbjct: 497 ILGATGLIPIKLKEGKGGSTDSYCVAKYGHKWVRTRTV---------------------- 534
Query: 664 ITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMG 723
N N G RDSRIGKVRIRLSTLESDRVYTHSYPLLMLH SGVKKMG
Sbjct: 535 -------------NTTNAGGYRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHTSGVKKMG 581
Query: 724 ELHLAVRFSCANLVNMLHMYAMPLLPKMHYVHPLSVHQLETLRYQALNVVSSWLNRAEPP 783
ELHLAVRFSCAN+ NML +Y +PLLPKMHYVHPLSV+QL++LRYQA+NVV+S L+RAEP
Sbjct: 582 ELHLAVRFSCANMGNMLSIYTLPLLPKMHYVHPLSVNQLDSLRYQAMNVVASRLSRAEPA 641
Query: 784 LGR----------------------------------------ESMRNWHKPIYSTLSLA 803
LGR ESMRNW+KP+YST+ +
Sbjct: 642 LGREVVEYMLDHDSHMWSMRRSKANFFRLMSVLSSFVAMGRFVESMRNWNKPVYSTIFMM 701
Query: 804 FFFLLVLMPELVIPAILLYLSLLGLWRYRSRSRHPPHMDIRLSQADSVFPDELDEEFDSF 863
F +LV PEL+IP +LLY++ +G+WRYRSR R PPHMD RLS A++V+PDELDEEFDSF
Sbjct: 702 IFLVLVSFPELIIPLLLLYMAFVGIWRYRSRPRQPPHMDTRLSHAETVYPDELDEEFDSF 761
Query: 864 PTSRGADIVRIRYDRLRSVAGRIQTVVGDMATQGERFQALISWRDPRATFLFVIFCLFAA 923
PTSR A+IVR+RYDRLRSVAGRIQTVVGDMA+QGERFQAL+SWRDPRATFLFV FCLFAA
Sbjct: 762 PTSRSAEIVRMRYDRLRSVAGRIQTVVGDMASQGERFQALLSWRDPRATFLFVNFCLFAA 821
Query: 924 IGFYAVPVRVVFALSGVYVLRPPRFRSKLPSPALSFFRRL 963
+GFY VP + V AL G+YVLRPP+FRSKLPS ALSFFR +
Sbjct: 822 VGFYLVPTKAVVALWGLYVLRPPKFRSKLPSRALSFFRSI 861
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115449609|ref|NP_001048508.1| Os02g0816000 [Oryza sativa Japonica Group] gi|47848177|dbj|BAD22004.1| putative anthranilate phosphoribosyltransferase [Oryza sativa Japonica Group] gi|113538039|dbj|BAF10422.1| Os02g0816000 [Oryza sativa Japonica Group] gi|125584141|gb|EAZ25072.1| hypothetical protein OsJ_08865 [Oryza sativa Japonica Group] gi|215768860|dbj|BAH01089.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1164 bits (3011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/1027 (57%), Positives = 740/1027 (72%), Gaps = 84/1027 (8%)
Query: 1 MGDGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFD 60
M EKLVVEV+AAHNLMPKDG+GSSS +VEVEFE Q RT+ + K+LNP+WNE+LVF
Sbjct: 1 MAKAAEKLVVEVVAAHNLMPKDGQGSSSAYVEVEFEHQRRRTRARPKELNPVWNERLVFA 60
Query: 61 VPDIAELPYKHIEVNVFNERRSS-----------NSRNFLGKVRAPCSQLCKNEGEATAQ 109
V D +LPY+ I+V V+N+R +S + RNFLGKVR P + + E Q
Sbjct: 61 VADPDDLPYRAIDVGVYNDRAASGGVAGGGGAAPHGRNFLGKVRVPAAGVPAPGEEVVPQ 120
Query: 110 LYTLEKRSLFSHIRGEISLKLFVSTTEEVVKKGGFVSSLTPSSAFSKKNKKLQQQSPVMQ 169
L+TLEKRSLFSHIRGEI+LK++ + + EVV K P A + +
Sbjct: 121 LFTLEKRSLFSHIRGEITLKIYRTNSGEVVVKS---KPEKPVKAVVSGPEVVAAPPVTGP 177
Query: 170 VQQQHFGHQDMMSKPTHQQQSQNHVKPMEPNPGELKPVVITTAPRPVIPGARGGPTFGGG 229
+QQ + P Q ++ + P P P +KPV++ P P
Sbjct: 178 KKQQQQQPVVAVQPPPPQPEAPMDILP-PPAPVLMKPVMLAD-PYP-------------- 221
Query: 230 GGGGVYVNGSGEFSLKETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDISLFGG 289
+G G+FSLKET P LGGG DK S+TYDLVEQMQYLYVRVV+AR ++ G
Sbjct: 222 --ASAVFSGPGDFSLKETRPRLGGG-TTADKASATYDLVEQMQYLYVRVVRARGVAAVG- 277
Query: 290 GEIVAEVKLGNYRGITKRVSSNHLQWDQVFAFSKDCIQSSAAEIFVKESDKDDFLGRIWF 349
E VAEVKLGNYRG+T +++H WDQVFAFSK+ IQSS E+FV+ DD +GR+WF
Sbjct: 278 -ETVAEVKLGNYRGVTPATAAHH--WDQVFAFSKETIQSSFVEVFVRARGSDDHVGRVWF 334
Query: 350 DLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGTQADEAFAEAWHSKAANV 409
DL+EVPRR PPDS LAPQW+ MEDR+G+R EVM+++WFGTQADEAFAEAWHSKAA V
Sbjct: 335 DLSEVPRRAPPDSTLAPQWHIMEDRKGERG-AAEVMIAVWFGTQADEAFAEAWHSKAAGV 393
Query: 410 HFDG-LCSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGS-AMMRFPELHAKAQVGNQFLK 467
H G L S+KSKVY++PKLWYLRVSVIEAQD++P DKG A+ R+PEL +AQVG+Q L+
Sbjct: 394 HGYGPLGSIKSKVYVAPKLWYLRVSVIEAQDLIPMDKGPMAIGRYPELFVRAQVGSQMLR 453
Query: 468 TRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVE 527
TR A +A R S+P WNEDL+FVVAEPFE++L++S+EDHV PG+D+++G++++PVS++E
Sbjct: 454 TRPAPVAANRGPSSPFWNEDLMFVVAEPFEEFLVLSLEDHVSPGRDDVLGRLVVPVSSIE 513
Query: 528 RRTDDKQVVSRWFNLENHFGNQG-ESKVVTRFGSRIHLRVSLDGGYHVLDEATLYSSDVK 586
RR D+K VVSRWF L+ G S RFGSR+HLR+SLDGGYHVLDEAT YSSD++
Sbjct: 514 RRWDEKLVVSRWFGLDRGTGGGNVASGNTNRFGSRVHLRLSLDGGYHVLDEATAYSSDLR 573
Query: 587 PTAKQLWKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLS 646
PT KQLW+PH+GVLE+G+LGATGL+PMK ++G+G + DAYCVAKYGQKW+RTRTVVDS+
Sbjct: 574 PTGKQLWQPHVGVLELGVLGATGLIPMKARDGRGATSDAYCVAKYGQKWIRTRTVVDSVC 633
Query: 647 PKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNS--GGRDSRIGKVRIRLSTLESDRV 704
P+WNEQYTWEVFDPCTVITVGVFDNC +DK N+ RD+ IGKVRIRLSTLE+DRV
Sbjct: 634 PRWNEQYTWEVFDPCTVITVGVFDNCHVDKPASGNTTLAVRDNCIGKVRIRLSTLETDRV 693
Query: 705 YTHSYPLLMLHPSGVKKMGELHLAVRFSCANLVNMLHMYAMPLLPKMHYVHPLSVHQLET 764
YTH+YPLLMLHPSGVKKMGELHLAVRF C N NM H Y PLLPKMHY+ PL V Q+E+
Sbjct: 694 YTHAYPLLMLHPSGVKKMGELHLAVRFCCGNAGNMFHAYVRPLLPKMHYIEPLLVRQVES 753
Query: 765 LRYQALNVVSSWLNRAEPPLGRES------------------------------------ 788
LR+QA NVV++ L RAEPPLGRE
Sbjct: 754 LRFQATNVVAARLGRAEPPLGREVVEYMLDHRSHLWSMRRSKANFFRLVTVLSGPITIGR 813
Query: 789 ----MRNWHKPIYSTLSLAFFFLLVLMPELVIPAILLYLSLLGLWRYRSRSRHPPHMDIR 844
+R+W++P++S L++ F + V MPEL++P L ++ GLWRYR RSRHPPHM++R
Sbjct: 814 WFELVRSWNRPVHSCLAVFTFLVFVTMPELILPTAFLAMAFTGLWRYRVRSRHPPHMEMR 873
Query: 845 LSQADSVFPDELDEEFDSFPTSRGADIVRIRYDRLRSVAGRIQTVVGDMATQGERFQALI 904
LS AD+ DELDEEFD+FP+SRG D+VR RYDRLRSVAGR+QTVVGD+ATQGER QAL+
Sbjct: 874 LSHADAATVDELDEEFDTFPSSRG-DVVRFRYDRLRSVAGRVQTVVGDIATQGERMQALL 932
Query: 905 SWRDPRATFLFVIFCLFAAIGFYAVPVRVVFALSGVYVLRPPRFRSKLPSPALSFFRRLP 964
SWRDPRAT LF I C+ AA+ Y +P++V+ L G+Y +RPPRFRS++PSP ++FFRRLP
Sbjct: 933 SWRDPRATVLFSIACVLAAVIAYTIPMKVLVGLWGLYAMRPPRFRSRMPSPLMNFFRRLP 992
Query: 965 SKADTLL 971
SKAD+LL
Sbjct: 993 SKADSLL 999
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125541616|gb|EAY88011.1| hypothetical protein OsI_09434 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 1164 bits (3010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/1027 (57%), Positives = 740/1027 (72%), Gaps = 84/1027 (8%)
Query: 1 MGDGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFD 60
M EKLVVEV+AAHNLMPKDG+GSSS +VEVEFE Q RT+ + K+LNP+WNE+LVF
Sbjct: 1 MAKAAEKLVVEVVAAHNLMPKDGQGSSSAYVEVEFEHQRRRTRARPKELNPVWNERLVFA 60
Query: 61 VPDIAELPYKHIEVNVFNERRSS-----------NSRNFLGKVRAPCSQLCKNEGEATAQ 109
V D +LPY+ I+V V+N+R +S + RNFLGKVR P + + E Q
Sbjct: 61 VSDPDDLPYRAIDVGVYNDRAASGGVAGGGGAAPHGRNFLGKVRVPAAGVPAPGEEVVPQ 120
Query: 110 LYTLEKRSLFSHIRGEISLKLFVSTTEEVVKKGGFVSSLTPSSAFSKKNKKLQQQSPVMQ 169
L+TLEKRSLFSHIRGEI+LK++ + + EVV K P A + +
Sbjct: 121 LFTLEKRSLFSHIRGEITLKIYRTNSGEVVVKS---KPEKPVKAVVSGPEVVAAPPVTGP 177
Query: 170 VQQQHFGHQDMMSKPTHQQQSQNHVKPMEPNPGELKPVVITTAPRPVIPGARGGPTFGGG 229
+QQ + P Q ++ + P P P +KPV++ P P
Sbjct: 178 KKQQQQQPVVAVQPPPPQPEAPMDILP-PPAPVLMKPVMLAD-PYP-------------- 221
Query: 230 GGGGVYVNGSGEFSLKETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDISLFGG 289
+G G+FSLKET P LGGG DK S+TYDLVEQMQYLYVRVV+AR ++ G
Sbjct: 222 --ASAVFSGPGDFSLKETRPRLGGG-TTADKASATYDLVEQMQYLYVRVVRARGVAAVG- 277
Query: 290 GEIVAEVKLGNYRGITKRVSSNHLQWDQVFAFSKDCIQSSAAEIFVKESDKDDFLGRIWF 349
E VAEVKLGNYRG+T +++H WDQVFAFSK+ IQSS E+FV+ DD +GR+WF
Sbjct: 278 -ETVAEVKLGNYRGVTPATAAHH--WDQVFAFSKETIQSSFVEVFVRARGSDDHVGRVWF 334
Query: 350 DLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGTQADEAFAEAWHSKAANV 409
DL+EVPRR PPDS LAPQW+ MEDR+G+R EVM+++WFGTQADEAFAEAWHSKAA V
Sbjct: 335 DLSEVPRRAPPDSTLAPQWHIMEDRKGERG-AAEVMIAVWFGTQADEAFAEAWHSKAAGV 393
Query: 410 HFDG-LCSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGS-AMMRFPELHAKAQVGNQFLK 467
H G L S+KSKVY++PKLWYLRVSVIEAQD++P DKG A+ R+PEL +AQVG+Q L+
Sbjct: 394 HGYGPLGSIKSKVYVAPKLWYLRVSVIEAQDLIPMDKGPMAIGRYPELFVRAQVGSQMLR 453
Query: 468 TRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVE 527
TR A +A R S+P WNEDL+FVVAEPFE++L++S+EDHV PG+D+++G++++PVS++E
Sbjct: 454 TRPAPVAANRGPSSPFWNEDLMFVVAEPFEEFLVLSLEDHVSPGRDDVLGRLVVPVSSIE 513
Query: 528 RRTDDKQVVSRWFNLENHFGNQG-ESKVVTRFGSRIHLRVSLDGGYHVLDEATLYSSDVK 586
RR D+K VVSRWF L+ G S RFGSR+HLR+SLDGGYHVLDEAT YSSD++
Sbjct: 514 RRWDEKLVVSRWFGLDRGTGGGNVASGNTNRFGSRVHLRLSLDGGYHVLDEATAYSSDLR 573
Query: 587 PTAKQLWKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLS 646
PT KQLW+PH+GVLE+G+LGATGL+PMK ++G+G + DAYCVAKYGQKW+RTRTVVDS+
Sbjct: 574 PTGKQLWQPHVGVLELGVLGATGLIPMKARDGRGATSDAYCVAKYGQKWIRTRTVVDSVC 633
Query: 647 PKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNS--GGRDSRIGKVRIRLSTLESDRV 704
P+WNEQYTWEVFDPCTVITVGVFDNC +DK N+ RD+ IGKVRIRLSTLE+DRV
Sbjct: 634 PRWNEQYTWEVFDPCTVITVGVFDNCHVDKPASGNTTLAVRDNCIGKVRIRLSTLETDRV 693
Query: 705 YTHSYPLLMLHPSGVKKMGELHLAVRFSCANLVNMLHMYAMPLLPKMHYVHPLSVHQLET 764
YTH+YPLLMLHPSGVKKMGELHLAVRF C N NM H Y PLLPKMHY+ PL V Q+E+
Sbjct: 694 YTHAYPLLMLHPSGVKKMGELHLAVRFCCGNAGNMFHAYVRPLLPKMHYIEPLLVRQVES 753
Query: 765 LRYQALNVVSSWLNRAEPPLGRES------------------------------------ 788
LR+QA NVV++ L RAEPPLGRE
Sbjct: 754 LRFQATNVVAARLGRAEPPLGREVVEYMLDHRSHLWSMRRSKANFFRLVTVLSGPITIGR 813
Query: 789 ----MRNWHKPIYSTLSLAFFFLLVLMPELVIPAILLYLSLLGLWRYRSRSRHPPHMDIR 844
+R+W++P++S L++ F + V MPEL++P L ++ GLWRYR RSRHPPHM++R
Sbjct: 814 WFELVRSWNRPVHSCLAVFTFLVFVTMPELILPTAFLAMAFTGLWRYRVRSRHPPHMEMR 873
Query: 845 LSQADSVFPDELDEEFDSFPTSRGADIVRIRYDRLRSVAGRIQTVVGDMATQGERFQALI 904
LS AD+ DELDEEFD+FP+SRG D+VR RYDRLRSVAGR+QTVVGD+ATQGER QAL+
Sbjct: 874 LSHADAATVDELDEEFDTFPSSRG-DVVRFRYDRLRSVAGRVQTVVGDIATQGERMQALL 932
Query: 905 SWRDPRATFLFVIFCLFAAIGFYAVPVRVVFALSGVYVLRPPRFRSKLPSPALSFFRRLP 964
SWRDPRAT LF I C+ AA+ Y +P++V+ L G+Y +RPPRFRS++PSP ++FFRRLP
Sbjct: 933 SWRDPRATVLFSIACVLAAVIAYTIPMKVLVGLWGLYAMRPPRFRSRMPSPLMNFFRRLP 992
Query: 965 SKADTLL 971
SKAD+LL
Sbjct: 993 SKADSLL 999
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242063490|ref|XP_002453034.1| hypothetical protein SORBIDRAFT_04g037100 [Sorghum bicolor] gi|241932865|gb|EES06010.1| hypothetical protein SORBIDRAFT_04g037100 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 1150 bits (2975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 588/1031 (57%), Positives = 737/1031 (71%), Gaps = 103/1031 (9%)
Query: 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIA 65
EKLVVEV+AAHNLMPKDG+GSSSP+VEVEFE Q RT+ + K+LNP+WNE+LVF V D
Sbjct: 5 EKLVVEVVAAHNLMPKDGQGSSSPYVEVEFEHQKRRTRARPKELNPVWNERLVFPVSDPD 64
Query: 66 ELPYKHIEVNVFNERRSS-----------NSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114
+LPY+ I+V V+N+R ++ + RNFLGKVR P + + EA QL+TLE
Sbjct: 65 DLPYRAIDVGVYNDRGAAASGAAAGGAAPHGRNFLGKVRVPAAGVPAPGEEAVPQLFTLE 124
Query: 115 KRSLFSHIRGEISLKLFVSTTEEVV-----KKGGFVSSLTPSSAFSKKNKKLQQQSPVMQ 169
KRSLFSHIRGEI+LK++ + +VV +K + P + ++ PV+
Sbjct: 125 KRSLFSHIRGEITLKIYRVNSGDVVVKSKQEKPAKAVVVGPEVVAAPTVTGPKKHHPVVA 184
Query: 170 VQQQHFGHQDMMSKPTHQQQSQNHVKPMEPNPGELKPVVITTAPRPVIPGARGGPTFGGG 229
VQ + M + P P P +KPVV+ P PV P
Sbjct: 185 VQPLPPQPEPPMD-----------IMPQPPVPMAMKPVVMHADPYPVPP----------- 222
Query: 230 GGGGVYVNGSGEFSLKETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDISLFGG 289
+G G+FSLKET P LG G + DK S+TYDLVEQ++YLYVRVV+AR + +
Sbjct: 223 -----MFSGPGDFSLKETRPRLGSG-VVADKASATYDLVEQVEYLYVRVVRARGVPMVT- 275
Query: 290 GEIVAEVKLGNYRGITKRVSSNHLQWDQVFAFSKDCIQSSAAEIFVKESDKDDFLGRIWF 349
E VAEVKLGNYRG+T V S++ WDQVFAFS++ IQSS E+FV+ DD +GR+WF
Sbjct: 276 -EAVAEVKLGNYRGVTPAVPSHN--WDQVFAFSRETIQSSFVEVFVRARGSDDHVGRVWF 332
Query: 350 DLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGTQADEAFAEAWHSKAANV 409
DL+EVPRR PPDS LAPQWY MEDR+G R G EVM+++WFGTQADE+FAEAWHSKAA V
Sbjct: 333 DLSEVPRRAPPDSTLAPQWYSMEDRKGQRG-GAEVMLAVWFGTQADESFAEAWHSKAAGV 391
Query: 410 HFDG-LCSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGS-AMMRFPELHAKAQVGNQFLK 467
H +G L S++S+VY++PKLWYLRVSVIE QD+ P DKG+ + RFPEL +AQVG+Q ++
Sbjct: 392 HGNGALGSIRSQVYVAPKLWYLRVSVIEGQDLFPMDKGALPIGRFPELFVRAQVGSQIMR 451
Query: 468 TRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVE 527
TR A +TR ++P WNEDL+FVVAEPFE++L++SVED V PG+DE++G++++PVSA+E
Sbjct: 452 TRPAPVVSTRGPASPFWNEDLMFVVAEPFEEFLVLSVEDRVSPGRDELLGRLVVPVSAIE 511
Query: 528 RRTDDKQVVSRWFNLE-NHFGNQGESKVVTRFGSR-IHLRVSLDGGYHVLDEATLYSSDV 585
RR D K VVSRWF L+ G + V RFGSR +HLR+SLDGGYHVLDEAT YSSD+
Sbjct: 512 RRWDWKPVVSRWFGLDRGTAGGNVAANNVHRFGSRRVHLRLSLDGGYHVLDEATAYSSDL 571
Query: 586 KPTAKQLWKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSL 645
+PTAKQLWKPH+GVLE+G+LGATGLMPMK ++G+G + DAYCVAKYGQKW+RTRT+VDSL
Sbjct: 572 QPTAKQLWKPHVGVLEVGVLGATGLMPMKSRDGRGATTDAYCVAKYGQKWIRTRTLVDSL 631
Query: 646 SPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSG-----GRDSRIGKVRIRLSTLE 700
P+WNEQYTWEVFDPCTVITVGVFDNC ++ N SG RD+ IGKVRIRLSTLE
Sbjct: 632 CPRWNEQYTWEVFDPCTVITVGVFDNC----HVGNTSGSTTMAARDNCIGKVRIRLSTLE 687
Query: 701 SDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSCANLVNMLHMYAMPLLPKMHYVHPLSVH 760
+DRVYTH+YPLLMLHPSGVKKMGELHLAVRF+C N NM H YA PLLPKMHY PL V
Sbjct: 688 TDRVYTHAYPLLMLHPSGVKKMGELHLAVRFACGNAGNMFHAYARPLLPKMHYAEPLLVR 747
Query: 761 QLETLRYQALNVVSSWLNRAEPPLGRES-------------------------------- 788
Q+ETLR QA NVV++ L RAEPPLG+E
Sbjct: 748 QVETLRSQATNVVAARLGRAEPPLGKEVVEYMLDHRSNLWSMRRSKANFFRLINVLSGPI 807
Query: 789 --------MRNWHKPIYSTLSLAFFFLLVLMPELVIPAILLYLSLLGLWRYRSRSRHPPH 840
+R+W +P++S L++ F + + MPEL++P L ++ GLWRYR R RHPPH
Sbjct: 808 AIGRWFELVRSWQRPVHSCLAVFTFLVFLTMPELILPTAFLAMAFAGLWRYRVRPRHPPH 867
Query: 841 MDIRLSQADSVFPDELDEEFDSFPTSRGADIVRIRYDRLRSVAGRIQTVVGDMATQGERF 900
M++RLS AD DELDEEFD+FP++RG D+VR RYDRLRSVAGR+QTVVGD+ATQGER
Sbjct: 868 MEMRLSHADGATADELDEEFDTFPSTRG-DVVRFRYDRLRSVAGRVQTVVGDIATQGERM 926
Query: 901 QALISWRDPRATFLFVIFCLFAAIGFYAVPVRVVFALSGVYVLRPPRFRSKLPSPALSFF 960
QA++SWRDPRAT LF I C+ AA+ Y VP++V+ + G+Y +RPPRFRS++PSP ++FF
Sbjct: 927 QAVLSWRDPRATLLFAIACVSAAVIAYCVPMKVMIGMWGLYAMRPPRFRSRMPSPLMNFF 986
Query: 961 RRLPSKADTLL 971
RRLPS+AD LL
Sbjct: 987 RRLPSRADILL 997
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413939471|gb|AFW74022.1| hypothetical protein ZEAMMB73_855724 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 1129 bits (2920), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 588/1031 (57%), Positives = 732/1031 (70%), Gaps = 95/1031 (9%)
Query: 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIA 65
EKLVVEV+AAHNLMPKDG+GSSSP+VEVEFE Q RT+ + K+LNP+WNE+LVF V D
Sbjct: 5 EKLVVEVVAAHNLMPKDGQGSSSPYVEVEFEHQKRRTRARPKELNPVWNERLVFPVSDPD 64
Query: 66 ELPYKHIEVNVFNERRSS-------NSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSL 118
+LPY+ I+V V+N+R ++ + RNFLGKVR P + + EA QL+TLEKRSL
Sbjct: 65 DLPYRAIDVGVYNDRGAAVGGGGAPHGRNFLGKVRVPSAGVPAPGEEAVPQLFTLEKRSL 124
Query: 119 FSHIRGEISLKLFVSTTEEVVKKG-------GFVSSLTPSSAFSKKNKKLQQQSPVMQVQ 171
FSHIRGEI+LK++ + +VV K V +A + K Q S
Sbjct: 125 FSHIRGEITLKIYRVNSGDVVVKSKQEKPAKAVVVGPEVVAAPTVTGPKKQPHSHPHPPP 184
Query: 172 QQHFGHQDMMSKPTHQQQSQNHVKPMEPNPGELKPVVITTAPRPVIPGARGGPTFGGGGG 231
Q + ++ + V P P P +KPV + P PV P
Sbjct: 185 PQQQHQRHPLAAVQPPPEPPMDVMPQPPVPMAMKPVAMHADPYPVPP------------- 231
Query: 232 GGVYVNGSGEFSLKETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDISLFGGGE 291
+G +FSLKET P LG G + DK S+TYDLVEQ++YLYVRVV+AR + + E
Sbjct: 232 ---MFSGPADFSLKETRPRLGSG-VVADKASATYDLVEQVEYLYVRVVRARGVPM--ATE 285
Query: 292 IVAEVKLGNYRGITKRVSSNHLQWDQVFAFSKDCIQSSAAEIFVKESDKDDFLGRIWFDL 351
VAEVKLGNYRG+T V S++ WDQVFAFS++ IQSS E+FV+ DD +GR+WFDL
Sbjct: 286 AVAEVKLGNYRGVTPAVPSHN--WDQVFAFSRETIQSSFVEVFVRARGSDDHVGRVWFDL 343
Query: 352 NEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGTQADEAFAEAWHSKAANVHF 411
+EVPRR PPDS LAPQWY MEDR+G R G EVM+++WFGTQADE+FAEAWHSKAA VH
Sbjct: 344 SEVPRRAPPDSTLAPQWYSMEDRKGQRG-GAEVMLAVWFGTQADESFAEAWHSKAAGVHG 402
Query: 412 DG-LCSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGS-AMMRFPELHAKAQVGNQFLKTR 469
+G L S++SKVY++PKLWYLRVSVIE QD+ P DKG A+ RFPEL +AQVG+Q ++TR
Sbjct: 403 NGALGSIRSKVYVAPKLWYLRVSVIEGQDLFPMDKGPLAIGRFPELFVRAQVGSQIMRTR 462
Query: 470 IAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERR 529
A +TR ++P WNEDL+FVVAEPFE++L++SVED V PG+DE++G++++PVSA+ERR
Sbjct: 463 PAPVVSTRGPASPFWNEDLMFVVAEPFEEFLVLSVEDRVSPGRDELLGRLVVPVSAIERR 522
Query: 530 TDDKQVVSRWFNLE-------NHFGNQGESKVVTRFGSR-IHLRVSLDGGYHVLDEATLY 581
D K VVSRWF L+ N GN V RFGSR +HLR+SLDGGYHVLDEAT Y
Sbjct: 523 WDWKPVVSRWFGLDCGTGGGGNVAGNS-----VHRFGSRRVHLRLSLDGGYHVLDEATAY 577
Query: 582 SSDVKPTAKQLWKPHIGVLEMGILGATGLMPMKFKEG-KGGSVDAYCVAKYGQKWVRTRT 640
SSD++PTAKQLWKPH+GVLE+G+LGATGLMPMK ++G +G + DAYCVAKYGQKW+RTRT
Sbjct: 578 SSDLQPTAKQLWKPHVGVLELGVLGATGLMPMKSRDGGRGATTDAYCVAKYGQKWIRTRT 637
Query: 641 VVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLE 700
+VDSL P+WNEQYTW+VFDPCTVITVGVFDNC +D + S RDS IGKVRIRLSTLE
Sbjct: 638 IVDSLCPRWNEQYTWDVFDPCTVITVGVFDNCHVDGA--SGSAARDSCIGKVRIRLSTLE 695
Query: 701 SDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSCANLVNMLHMYAMPLLPKMHYVHPLSVH 760
+DRVYTH+YPLLMLHP+GVKKMGELHLAVRF+C N NM H YA PLLPKMHY PL V
Sbjct: 696 TDRVYTHAYPLLMLHPTGVKKMGELHLAVRFACGNAGNMFHAYAHPLLPKMHYAEPLLVR 755
Query: 761 QLETLRYQALNVVSSWLNRAEPPLGRES-------------------------------- 788
Q+ETLR QA NVV++ L RAEPPLG+E
Sbjct: 756 QVETLRCQATNVVAARLGRAEPPLGKEVVEYMLDHRSSLWSMRRSKANFFRLINVLSGPV 815
Query: 789 --------MRNWHKPIYSTLSLAFFFLLVLMPELVIPAILLYLSLLGLWRYRSRSRHPPH 840
+R+W +P++S L++ F + + PELV+P L ++ GLWRYR R RHPPH
Sbjct: 816 AIGRWFELVRSWQRPVHSCLAVFTFLVFLATPELVLPTAFLAMAFAGLWRYRGRPRHPPH 875
Query: 841 MDIRLSQADSVFPDELDEEFDSFPTSRGADIVRIRYDRLRSVAGRIQTVVGDMATQGERF 900
M++RLS AD DELDEEFD+FP++RG D+VR RYDRLRSVAGR+QTVVGD+ATQGER
Sbjct: 876 MEMRLSHADGATADELDEEFDTFPSTRG-DVVRFRYDRLRSVAGRVQTVVGDIATQGERM 934
Query: 901 QALISWRDPRATFLFVIFCLFAAIGFYAVPVRVVFALSGVYVLRPPRFRSKLPSPALSFF 960
QA++SWRDPRAT LF + C+ AA+ Y VP +V+ + G+Y +RPPRFRS++PSP ++FF
Sbjct: 935 QAVLSWRDPRATLLFAVACVAAAVIAYCVPTKVMVGMWGLYAMRPPRFRSRMPSPLMNFF 994
Query: 961 RRLPSKADTLL 971
RRLPS+AD LL
Sbjct: 995 RRLPSRADILL 1005
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 971 | ||||||
| TAIR|locus:2020280 | 1012 | AT1G04150 "AT1G04150" [Arabido | 0.780 | 0.749 | 0.632 | 1.4e-259 | |
| TAIR|locus:2009492 | 1029 | AT1G22610 "AT1G22610" [Arabido | 0.546 | 0.516 | 0.554 | 2.4e-251 | |
| TAIR|locus:2127103 | 1006 | AT4G00700 "AT4G00700" [Arabido | 0.559 | 0.539 | 0.514 | 3.4e-220 | |
| TAIR|locus:2139727 | 1011 | AT4G11610 "AT4G11610" [Arabido | 0.547 | 0.526 | 0.586 | 8.1e-203 | |
| TAIR|locus:2017627 | 776 | AT1G51570 [Arabidopsis thalian | 0.554 | 0.693 | 0.648 | 7.6e-199 | |
| TAIR|locus:2162712 | 1036 | AT5G48060 "AT5G48060" [Arabido | 0.554 | 0.519 | 0.558 | 4.6e-198 | |
| TAIR|locus:2095853 | 773 | AT3G57880 "AT3G57880" [Arabido | 0.550 | 0.692 | 0.653 | 2.9e-197 | |
| TAIR|locus:2096409 | 1017 | AT3G03680 "AT3G03680" [Arabido | 0.781 | 0.746 | 0.397 | 1.7e-191 | |
| TAIR|locus:2182305 | 769 | AT5G12970 "AT5G12970" [Arabido | 0.546 | 0.690 | 0.632 | 9.8e-190 | |
| TAIR|locus:2019070 | 1081 | QKY "AT1G74720" [Arabidopsis t | 0.550 | 0.494 | 0.478 | 2.6e-160 |
| TAIR|locus:2020280 AT1G04150 "AT1G04150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2498 (884.4 bits), Expect = 1.4e-259, P = 1.4e-259
Identities = 512/810 (63%), Positives = 608/810 (75%)
Query: 2 GDGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDV 61
G G E+LVVE++ AHNLMPKDGE SSSPFVEV+FE Q LRT+VK KDLNPIWNEKLVF V
Sbjct: 7 GTGNERLVVEIVGAHNLMPKDGEDSSSPFVEVQFENQRLRTKVKPKDLNPIWNEKLVFHV 66
Query: 62 PDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSH 121
D+ +L +K +E+NV+NE+RSSNSRNFLGKVR S + + EGE+ QLYTLEKRSLFS
Sbjct: 67 IDVNDLRHKALEINVYNEKRSSNSRNFLGKVRVLGSSVGR-EGESVVQLYTLEKRSLFSS 125
Query: 122 IRGEISLKLFVSTTEEVVKKGGFVSSLTPSSAFSKKNKKLXXXXXXXXXXXXHFGHQDMM 181
+RGEIS+K +++TT E G V + S SKK+KK+ Q +
Sbjct: 126 VRGEISVKHYMTTTAE---NGENVRRVNRSGG-SKKSKKVQNVSSSMAIQQQQQQQQQQI 181
Query: 182 SKPTH----QQQSQNH-----VKPMEPNPGELKPVVITTAPRPVIPXXXXXXXXXXXXXX 232
S H QQQSQ + + P P+ E+KP+VIT P P+ P
Sbjct: 182 SLHNHNRGNQQQSQQNGQGQRMLPFYPHQSEIKPLVITALPSPM-PGPGPRPIVYSNGSS 240
Query: 233 XXXXXXXXEFSLKETSPHLGG-----GPLN--KDKTSSTYDLVEQMQYLYVRVVKARDIS 285
EFSLKET P LGG G L+ KDKTSSTYDLVEQMQYLYV +VKA+D+S
Sbjct: 241 --------EFSLKETKPCLGGTSNGLGGLSSHKDKTSSTYDLVEQMQYLYVNIVKAKDLS 292
Query: 286 LFGGGEIVAEVKLGNYRGITKRVSSN--HLQWDQVFAFSKDCIQSSAAEIFVKESDKDDF 343
+ G E+V+EVKLGNYRG+TK+VSSN + +W+QVF FSK+ IQSS E+FVKE +KD++
Sbjct: 293 VLG--EVVSEVKLGNYRGVTKKVSSNSSNPEWNQVFVFSKERIQSSVVELFVKEGNKDEY 350
Query: 344 LGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGTQADEAFAEAWH 403
GR+ FDL+E+P RVPPDS LAPQWY++E+R G R G E+MVS+WFGTQADEAFAEAWH
Sbjct: 351 TGRVLFDLSEIPTRVPPDSPLAPQWYKIENRNGGRGNG-ELMVSVWFGTQADEAFAEAWH 409
Query: 404 SKAANVHFDGLCSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGN 463
SKA NVH + L S+KSKVYLSPKLWYLR+SVIEAQD+ DKGS++MRFPEL AK QVG+
Sbjct: 410 SKAGNVHIEELSSIKSKVYLSPKLWYLRISVIEAQDVAIMDKGSSLMRFPELSAKLQVGS 469
Query: 464 QFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPG-----KDEIVGK 518
Q L+T IA+ T+S SNP WNEDL+FVVAEPFED + + VED + G D VG+
Sbjct: 470 QILRTAIASAIPTKSFSNPYWNEDLMFVVAEPFEDCVTVVVEDRLNGGAIGGQNDVAVGR 529
Query: 519 VLIPVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEA 578
V IP+SAVERRT D V SRWF+L+N GN RFGSRIHLR+SLDGGYHVLDEA
Sbjct: 530 VQIPISAVERRTGDTLVGSRWFSLDN--GNNNN-----RFGSRIHLRLSLDGGYHVLDEA 582
Query: 579 TLYSSDVKPTAKQLWKPHIGVLEMGILGATGLMPMKFKEGK-GGSVDAYCVAKYGQKWVR 637
T+Y+SDV+PTAK+LWKP +G+LE+GIL ATGLMPMK ++GK GG D+YCVAKYG KWVR
Sbjct: 583 TMYNSDVRPTAKELWKPQVGLLEIGILSATGLMPMKVRDGKCGGIADSYCVAKYGPKWVR 642
Query: 638 TRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLS 697
TRTVVDSL PKWNEQYTWEV+DPCTV+TVGVFDN +++N NNS RD RIGKVRIRLS
Sbjct: 643 TRTVVDSLCPKWNEQYTWEVYDPCTVVTVGVFDNARVNEN--NNS--RDVRIGKVRIRLS 698
Query: 698 TLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSCANLVNMLHMYAMPLLPKMHYVHPL 757
TLE+ RVYTHSYPL++LHPSGVKK GELHLAVR SC N VNMLHMYA+PLLPKMHY PL
Sbjct: 699 TLETGRVYTHSYPLIVLHPSGVKKTGELHLAVRLSCGNAVNMLHMYALPLLPKMHYTQPL 758
Query: 758 SVHQLETLRYQALNVVSSWLNRAEPPLGRE 787
VH LE LRYQ LN V++ L+RAEPPLGRE
Sbjct: 759 GVHMLERLRYQTLNAVAARLSRAEPPLGRE 788
|
|
| TAIR|locus:2009492 AT1G22610 "AT1G22610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1567 (556.7 bits), Expect = 2.4e-251, Sum P(3) = 2.4e-251
Identities = 314/566 (55%), Positives = 402/566 (71%)
Query: 241 EFSLKETSPHLGGGPLNK-------DKTSSTYDLVEQMQYLYVRVVKARDISLF---GGG 290
EF L ETSP L DKTSSTYDLVEQM YLYV VVKARD+ + G
Sbjct: 256 EFQLIETSPPLAARMRQSYYYRSSGDKTSSTYDLVEQMHYLYVSVVKARDLPVMDVSGSL 315
Query: 291 EIVAEVKLGNYRGITKRVSSNHLQ-WDQVFAFSKDCIQSSAAEIFVKESD---KDDFLGR 346
+ EVKLGNY+G+TK + N W Q+FAFSK+ +QS+ E+ VK+ D KDDF+GR
Sbjct: 316 DPYVEVKLGNYKGLTKHLEKNSNPIWKQIFAFSKERLQSNLLEVTVKDKDLLTKDDFVGR 375
Query: 347 IWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGTQADEAFAEAWHSKA 406
+ DL EVP RVPPDS LAPQWYR+ED++G ++ GE+M+++W GTQADE+F +AWHS A
Sbjct: 376 VHIDLTEVPLRVPPDSPLAPQWYRLEDKKGMKTNRGEIMLAVWMGTQADESFPDAWHSDA 435
Query: 407 ANVHFDGLCSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFL 466
V L + +SKVY SPKL+YLR+ V+EAQD+VP DKG R P+ K Q GNQ
Sbjct: 436 HRVSHSNLSNTRSKVYFSPKLYYLRIHVMEAQDLVPSDKG----RVPDAIVKIQAGNQMR 491
Query: 467 KTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAV 526
TR P R++ NP W+E+L+FVV+EPFED +++SV+D +GPGKDEI+G+V IPV V
Sbjct: 492 ATR--TPQM-RTM-NPQWHEELMFVVSEPFEDMVIVSVDDRIGPGKDEILGRVFIPVRDV 547
Query: 527 ERRTD-DKQVVSRWFNLENHFGNQGES--KVVTRFGSRIHLRVSLDGGYHVLDEATLYSS 583
R + K RWFNL+ H + E K +F S+I LRV ++ GYHVLDE+T +SS
Sbjct: 548 PVRQEVGKMPDPRWFNLQRHSMSMEEENEKRKEKFSSKILLRVCIEAGYHVLDESTHFSS 607
Query: 584 DVKPTAKQLWKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVD 643
D++P++K L KP IG+LE+GIL A LMPMK K+G+ D YCVAKYG KWVRTRT++D
Sbjct: 608 DLQPSSKHLRKPSIGILELGILSARNLMPMKGKDGR--MTDPYCVAKYGNKWVRTRTLLD 665
Query: 644 SLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGG--RDSRIGKVRIRLSTLES 701
+L+PKWNEQYTWEV DPCTVIT+GVFDN + N GG +D RIGKVR+RLSTLE+
Sbjct: 666 ALAPKWNEQYTWEVHDPCTVITIGVFDNSHV------NDGGDFKDQRIGKVRVRLSTLET 719
Query: 702 DRVYTHSYPLLMLHPSGVKKMGELHLAVRFSCANLVNMLHMYAMPLLPKMHYVHPLSVHQ 761
DRVYTH YPLL+L P G+KK GEL LA+R++C VNM+ Y PLLPKMHY+ P+ V
Sbjct: 720 DRVYTHFYPLLVLTPGGLKKNGELQLALRYTCTGFVNMMAQYGRPLLPKMHYIQPIPVRH 779
Query: 762 LETLRYQALNVVSSWLNRAEPPLGRE 787
++ LR+QA+ +V++ L+R+EPPL RE
Sbjct: 780 IDLLRHQAMQIVATRLSRSEPPLRRE 805
|
|
| TAIR|locus:2127103 AT4G00700 "AT4G00700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1440 (512.0 bits), Expect = 3.4e-220, Sum P(3) = 3.4e-220
Identities = 300/583 (51%), Positives = 403/583 (69%)
Query: 241 EFSLKETSPHLGGGPL--------NKDKTSSTYDLVEQMQYLYVRVVKARDI---SLFGG 289
+FS+KETSP LGGG + + TS TYDLVE+M++LYVRVVKARD+ L G
Sbjct: 229 DFSVKETSPLLGGGRIVGGRVVRGTERPTSGTYDLVEEMKFLYVRVVKARDLPNKDLTGS 288
Query: 290 GEIVAEVKLGNYRGITKRVSSN-HLQWDQVFAFSKDCIQSSAAEIFVKESD--KDDFLGR 346
+ VK+GN++G+T + N +W+QVFAF+KD +QS+ E+ VK+ D DDF+G
Sbjct: 289 LDPYVVVKIGNFKGVTTHFNKNTDPEWNQVFAFAKDNLQSNFLEVMVKDKDILLDDFVGI 348
Query: 347 IWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGTQADEAFAEAWHSKA 406
+ FDL EV RVPPDS LAPQWYR+E++RG++ K E+M+++W GTQADEAF +A S +
Sbjct: 349 VKFDLREVQSRVPPDSPLAPQWYRLENKRGEK-KNYEIMLAVWSGTQADEAFGDATFSDS 407
Query: 407 ANVHFDGL----CSLKSKVYLSPKLWYLRVSVIEAQD-IVPGDKGSAMMRFPELHAKAQV 461
V D +L+SKVY SP+LWYLRV ++EAQD I+ DK R PE+ + +V
Sbjct: 408 L-VDSDSSNIISANLRSKVYHSPRLWYLRVQILEAQDVIIVSDKS----RVPEVFVRVKV 462
Query: 462 GNQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLI 521
GNQ L+T+ P RS +NP W ++ FVVAEPFED L++SVEDH P +DE VGK +I
Sbjct: 463 GNQMLRTKF--PQ--RS-NNPKWGDEFTFVVAEPFEDNLVLSVEDHTAPNRDEPVGKAVI 517
Query: 522 PVSAVERRTDDKQVVSRWFNLENHFGNQ---GESKVVTRFGSRIHLRVSLDGGYHVLDEA 578
++ +E+R DDK RW +LE+ + ++K V +F +R+ + LDGGYHV DE+
Sbjct: 518 LMNDIEKRIDDKPFHDRWVHLEDSISDAMDVDKAKKV-KFATRLRYKAVLDGGYHVFDES 576
Query: 579 TLYSSDVKPTAKQLWKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRT 638
SSD++P++++LWKP IGVLE+GIL A MK +EGKG S D Y VAKYG KWVR+
Sbjct: 577 MYNSSDLRPSSRKLWKPAIGVLELGILNANVFHSMKTREGKGTS-DTYVVAKYGHKWVRS 635
Query: 639 RTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLST 698
RTV++S++PK+NEQYTWEVFDP TV+T+ VFDN N RD IGKVRIRLST
Sbjct: 636 RTVINSMNPKYNEQYTWEVFDPATVLTICVFDNAHFAAGDGGNK--RDQPIGKVRIRLST 693
Query: 699 LESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSCANLVNMLHMYAMPLLPKMHYVHPLS 758
L++ RVYTH+YPLL+L P+G+KK GELHLAVRF+C ++ +ML Y PLLPKMHY+ PLS
Sbjct: 694 LQTGRVYTHAYPLLVLQPTGLKKRGELHLAVRFTCTSVSSMLMKYTKPLLPKMHYILPLS 753
Query: 759 VHQLETLRYQALNVVSSWLNRAEPPLGRES---MRNWHKPIYS 798
+Q E L+ QA+N++ L R+EPPL RE + +W ++S
Sbjct: 754 TNQQEALKMQAINIIIVRLGRSEPPLRREVVDYLTDWKSQLFS 796
|
|
| TAIR|locus:2139727 AT4G11610 "AT4G11610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1690 (600.0 bits), Expect = 8.1e-203, Sum P(2) = 8.1e-203
Identities = 330/563 (58%), Positives = 429/563 (76%)
Query: 241 EFSLKETSPHLGGGP------LNKDKTS-STYDLVEQMQYLYVRVVKARDISLF---GGG 290
+F+LKETSPHLGGG ++KDKT+ STYDLVE+M +LYVRVVKAR++ + G
Sbjct: 240 DFALKETSPHLGGGRVVGGRVIHKDKTATSTYDLVERMYFLYVRVVKARELPIMDITGSV 299
Query: 291 EIVAEVKLGNYRGITKRVSSN-HLQWDQVFAFSKDCIQSSAAEIFVKESD--KDDFLGRI 347
+ EV++GNY+GIT+ H +W+QVFAF+K+ +Q+S E+ VK+ D KDD++G +
Sbjct: 300 DPFVEVRVGNYKGITRHFEKRQHPEWNQVFAFAKERMQASVLEVVVKDKDLLKDDYVGFV 359
Query: 348 WFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGTQADEAFAEAWHSKAA 407
FD+N+VP RVPPDS LAPQWYR+ED++G++ KG E+M+++W GTQADEAF++AWHS AA
Sbjct: 360 RFDINDVPLRVPPDSPLAPQWYRLEDKKGEKIKG-ELMLAVWIGTQADEAFSDAWHSDAA 418
Query: 408 N-VHFDGLCS--LKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQ 464
V S L+SKVY +P+LWY+RV+VIEAQD++P DK RFP+++ KAQ+GNQ
Sbjct: 419 MPVDCSPAISAVLRSKVYHAPRLWYVRVNVIEAQDLIPTDK----TRFPDVYVKAQLGNQ 474
Query: 465 FLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVS 524
+KTR P R+L WNED LFVVAEPFED+L+++VED V PGKDEIVG+ IP++
Sbjct: 475 VMKTR---PCQARTLG-AVWNEDFLFVVAEPFEDHLVLTVEDRVAPGKDEIVGRTYIPLN 530
Query: 525 AVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEATLYSSD 584
VE+R DD + +RW+NLE + +F RIHLRV L+GGYHVLDE+T YSSD
Sbjct: 531 TVEKRADDHMIHARWYNLERPVIVDVDQLKREKFSMRIHLRVCLEGGYHVLDESTHYSSD 590
Query: 585 VKPTAKQLWKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDS 644
++P+A+ LW+ IGVLE+GIL A GL PMK +EG+G S D +CV KYGQKWVRTRT+VD+
Sbjct: 591 LRPSARPLWRQPIGVLELGILNAVGLHPMKTREGRGTS-DTFCVGKYGQKWVRTRTMVDN 649
Query: 645 LSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRV 704
L PK+NEQYTWEVFDP TV+TVGVFDN L + G RD +IGK+RIRLSTLE+ R+
Sbjct: 650 LCPKYNEQYTWEVFDPATVLTVGVFDNGQLGEK-----GNRDVKIGKIRIRLSTLETGRI 704
Query: 705 YTHSYPLLMLHPSGVKKMGELHLAVRFSCANLVNMLHMYAMPLLPKMHYVHPLSVHQLET 764
YTHSYPLL+LHP+GVKKMGELH+AVRF+C + NML+ Y+ PLLPKMHYV P SV Q +
Sbjct: 705 YTHSYPLLVLHPTGVKKMGELHMAVRFTCISFANMLYQYSKPLLPKMHYVRPFSVMQQDM 764
Query: 765 LRYQALNVVSSWLNRAEPPLGRE 787
LR+QA+N+V++ L RAEPPL +E
Sbjct: 765 LRHQAVNIVAARLGRAEPPLRKE 787
|
|
| TAIR|locus:2017627 AT1G51570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1925 (682.7 bits), Expect = 7.6e-199, P = 7.6e-199
Identities = 359/554 (64%), Positives = 449/554 (81%)
Query: 241 EFSLKETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDI---SLFGGGEIVAEVK 297
+FSLKET PHLGGG + DK ++TYDLVEQMQYLYVRVVKA+++ L G + EVK
Sbjct: 8 DFSLKETKPHLGGGKVTGDKLTTTYDLVEQMQYLYVRVVKAKELPGKDLTGSCDPYVEVK 67
Query: 298 LGNYRGITKRVSS-NHLQWDQVFAFSKDCIQSSAAEIFVKESD--KDDFLGRIWFDLNEV 354
LGNYRG T+ ++ +W+QVFAFSKD +Q+S E VK+ D KDD +GR+ FDLNE+
Sbjct: 68 LGNYRGTTRHFEKKSNPEWNQVFAFSKDRVQASYLEATVKDKDLVKDDLIGRVVFDLNEI 127
Query: 355 PRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGTQADEAFAEAWHSKAANVH-FDG 413
P+RVPPDS LAPQWYR+ED +G + KG E+M+++WFGTQADEAF EAWHS AA V D
Sbjct: 128 PKRVPPDSPLAPQWYRLEDGKGQKVKG-ELMLAVWFGTQADEAFPEAWHSDAATVSGTDA 186
Query: 414 LCSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAP 473
L +++SKVYLSPKLWYLRV+VIEAQD++P DKG R+PE+ K +GNQ L+TR+
Sbjct: 187 LANIRSKVYLSPKLWYLRVNVIEAQDLIPSDKG----RYPEVFVKVIMGNQALRTRV--- 239
Query: 474 SATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDK 533
S +RS+ NP WNEDL+FVVAEPFE+ L++SVED V P KDE++G+ +P+ +++R D +
Sbjct: 240 SQSRSI-NPMWNEDLMFVVAEPFEEPLILSVEDRVAPNKDEVLGRCAVPLQYLDKRFDYR 298
Query: 534 QVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEATLYSSDVKPTAKQLW 593
V SRWFNLE H +G K +F S+IH+R+ L+GGYHVLDE+T YSSD++PTAKQLW
Sbjct: 299 PVNSRWFNLEKHVIMEGGEKKEIKFASKIHMRICLEGGYHVLDESTHYSSDLRPTAKQLW 358
Query: 594 KPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQY 653
KP+IGVLE+G+L ATGLMPMK KEG G+ DAYCVAKYGQKW+RTRT++DS +P+WNEQY
Sbjct: 359 KPNIGVLELGVLNATGLMPMKAKEGGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQY 418
Query: 654 TWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713
TWEVFDPCTV+TVGVFDNC L NN GG+DSRIGKVRIRLSTLE+DRVYTHSYPLL+
Sbjct: 419 TWEVFDPCTVVTVGVFDNCHLHGGDKNNGGGKDSRIGKVRIRLSTLEADRVYTHSYPLLV 478
Query: 714 LHPSGVKKMGELHLAVRFSCANLVNMLHMYAMPLLPKMHYVHPLSVHQLETLRYQALNVV 773
LHPSGVKKMGE+HLAVRF+C++L+NM++MY+MPLLPKMHY+HPL+V QL+ LR+QA +V
Sbjct: 479 LHPSGVKKMGEIHLAVRFTCSSLLNMMYMYSMPLLPKMHYLHPLTVSQLDNLRHQATQIV 538
Query: 774 SSWLNRAEPPLGRE 787
S+ L RAEPPL +E
Sbjct: 539 STRLTRAEPPLRKE 552
|
|
| TAIR|locus:2162712 AT5G48060 "AT5G48060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1639 (582.0 bits), Expect = 4.6e-198, Sum P(2) = 4.6e-198
Identities = 314/562 (55%), Positives = 422/562 (75%)
Query: 241 EFSLKETSPHLGG---GPLNKDKTSSTYDLVEQMQYLYVRVVKARDI---SLFGGGEIVA 294
+F +K+ + LG P ++ + TYDLVEQM YLYVRVVKA+++ S+ GG +
Sbjct: 260 DFKVKDMNLDLGERWPNPNAGERFTGTYDLVEQMFYLYVRVVKAKELPPGSITGGCDPYV 319
Query: 295 EVKLGNYRGITKRVSSNHL--QWDQVFAFSKDCIQSSAAEIFVKESD---KDDFLGRIWF 349
EVKLGNY+G TK +W+QVFAF+K+ IQSS E+FVK+ + +DD LG++ F
Sbjct: 320 EVKLGNYKGRTKIFDRKTTIPEWNQVFAFTKERIQSSVLEVFVKDKETLGRDDILGKVVF 379
Query: 350 DLNEVPRRVPPDSQLAPQWYRMEDRRGD-RSKGGEVMVSIWFGTQADEAFAEAWHSKAAN 408
DLNE+P RVPP+S LAPQWYR+ED RG+ + GE+M+++W GTQADEAF EAWH+ +A+
Sbjct: 380 DLNEIPTRVPPNSPLAPQWYRLEDWRGEGKVVRGEIMLAVWMGTQADEAFPEAWHADSAS 439
Query: 409 VHFDGLCSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKT 468
VH +G+ +++SKVY+SPKLWYLRV+VIEAQD++P D+ R P++ KA VG Q LKT
Sbjct: 440 VHGEGVFNIRSKVYVSPKLWYLRVNVIEAQDMIPSDRN----RLPDVFVKASVGMQTLKT 495
Query: 469 RIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVER 528
I + T NP W EDL+FVVAEPFE+ L+ISVED V KDE++GK+ +P++ E+
Sbjct: 496 SICSIKTT----NPLWKEDLVFVVAEPFEEQLVISVEDRVHTSKDEVIGKITLPMNVFEK 551
Query: 529 RTDDKQVVSRWFNLENHFGNQGES---KVVTRFGSRIHLRVSLDGGYHVLDEATLYSSDV 585
R D + V SRWFNL+ + E + +F SRIHLR+ L+GGYHV+DE+T+Y SD
Sbjct: 552 RLDHRPVHSRWFNLDKYGTGVLEPDARRKEHKFSSRIHLRICLEGGYHVMDESTMYISDT 611
Query: 586 KPTAKQLWKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSL 645
+PTA+QLWK +G+LE+GILGA GL+PMK K+G+G S +AYCVAKYGQKWVRTRT++D+L
Sbjct: 612 RPTARQLWKQPVGMLEIGILGANGLVPMKLKDGRG-STNAYCVAKYGQKWVRTRTILDTL 670
Query: 646 SPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVY 705
SP+WNEQYTWEV+DPCTVIT+GVFDN L + RD+RIGKVRIRLSTLE+ ++Y
Sbjct: 671 SPRWNEQYTWEVYDPCTVITLGVFDNSHLGSAQSGTADSRDARIGKVRIRLSTLEAHKIY 730
Query: 706 THSYPLLMLHPSGVKKMGELHLAVRFSCANLVNMLHMYAMPLLPKMHYVHPLSVHQLETL 765
THS+PLL+L P G+KK G+L ++VRF+ +L N+++ Y PLLPKMHY+ P +V+Q++ L
Sbjct: 731 THSFPLLVLQPHGLKKTGDLQISVRFTTLSLANIIYNYGHPLLPKMHYLFPFTVNQVDGL 790
Query: 766 RYQALNVVSSWLNRAEPPLGRE 787
RYQA+N+VS+ L RAEPPL +E
Sbjct: 791 RYQAMNIVSTRLGRAEPPLRKE 812
|
|
| TAIR|locus:2095853 AT3G57880 "AT3G57880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1910 (677.4 bits), Expect = 2.9e-197, P = 2.9e-197
Identities = 362/554 (65%), Positives = 449/554 (81%)
Query: 241 EFSLKETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDI---SLFGGGEIVAEVK 297
+FSLKET PHLGGG L+ DK +STYDLVEQMQYLYVRVVKA+++ + G + EVK
Sbjct: 8 DFSLKETRPHLGGGKLSGDKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGSCDPYVEVK 67
Query: 298 LGNYRGITKRVSS-NHLQWDQVFAFSKDCIQSSAAEIFVKESD--KDDFLGRIWFDLNEV 354
LGNY+G T+ ++ +W+QVFAFSKD IQ+S E VK+ D KDD +GR+ FDLNEV
Sbjct: 68 LGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDFVKDDLIGRVVFDLNEV 127
Query: 355 PRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGTQADEAFAEAWHSKAANVH-FDG 413
P+RVPPDS LAPQWYR+EDR+GD+ KG E+M+++WFGTQADEAF EAWHS AA V D
Sbjct: 128 PKRVPPDSPLAPQWYRLEDRKGDKVKG-ELMLAVWFGTQADEAFPEAWHSDAATVSGTDA 186
Query: 414 LCSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAP 473
L +++SKVYLSPKLWYLRV+VIEAQD++P DK R+PE++ KA VGNQ L+TR+
Sbjct: 187 LANIRSKVYLSPKLWYLRVNVIEAQDLIPTDK----QRYPEVYVKAIVGNQALRTRV--- 239
Query: 474 SATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDK 533
S +R++ NP WNEDL+FV AEPFE+ L++SVED V P KDE++G+ IP+ ++RR D K
Sbjct: 240 SQSRTI-NPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIPLQYLDRRFDHK 298
Query: 534 QVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEATLYSSDVKPTAKQLW 593
V SRW+NLE H GE K T+F SRIH+R+ L+GGYHVLDE+T YSSD++PTAKQLW
Sbjct: 299 PVNSRWYNLEKHIMVDGEKKE-TKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLW 357
Query: 594 KPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQY 653
KP+IGVLE+GIL ATGLMPMK K+G+G + DAYCVAKYGQKW+RTRT++DS +P+WNEQY
Sbjct: 358 KPNIGVLELGILNATGLMPMKTKDGRG-TTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQY 416
Query: 654 TWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713
TWEVFDPCTV+TVGVFDNC L G +DSRIGKVRIRLSTLE+DRVYTHSYPLL+
Sbjct: 417 TWEVFDPCTVVTVGVFDNCHLHGGE-KIGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLV 475
Query: 714 LHPSGVKKMGELHLAVRFSCANLVNMLHMYAMPLLPKMHYVHPLSVHQLETLRYQALNVV 773
LHP+GVKKMGE+HLAVRF+C++L+NM++MY+ PLLPKMHY+HPL+V QL+ LR+QA +V
Sbjct: 476 LHPNGVKKMGEIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQATQIV 535
Query: 774 SSWLNRAEPPLGRE 787
S L RAEPPL +E
Sbjct: 536 SMRLTRAEPPLRKE 549
|
|
| TAIR|locus:2096409 AT3G03680 "AT3G03680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1427 (507.4 bits), Expect = 1.7e-191, Sum P(2) = 1.7e-191
Identities = 321/807 (39%), Positives = 473/807 (58%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
KL+VE+ +A NLMPKDG+G++S + V+F+ Q RT+ K++DLNP W+EKL F V D+A
Sbjct: 8 KLIVEICSARNLMPKDGQGTASAYAIVDFDGQRRRTKTKFRDLNPQWDEKLEFFVHDVAT 67
Query: 67 LPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEI 126
+ + +E+N+ N++++ FLGKV+ S + G T Y LEKRS+FS I+GEI
Sbjct: 68 MGEEILEINLCNDKKTGKRSTFLGKVKIAGSAFA-SAGSETLVYYPLEKRSVFSQIKGEI 126
Query: 127 SLKLFVSTTEEVVKKGGFVSSLTPSSAFSKKNKKLXXXXXXXXXXXXHFGHQDMMSKPTH 186
LK + ++A +K ++ +
Sbjct: 127 GLKAYYVDENPPAAPAATEPKPEAAAATEEKPPEIAKAEDGKKETEAAKTEEKKEGDKKE 186
Query: 187 QQQSQNHVKPMEPNPGELKPVVITTAPRP---VIPXXXXXXXXXXXXXXXXXXXXXXEFS 243
+++ + KP E P + P T A +P V P E
Sbjct: 187 EEKPKEEAKPDEKKP-DAPPD--TKAKKPDTAVAPPPPPAEVKNPPIPQKAETVKQNELG 243
Query: 244 LKETSPH----LGGG---P-LNKDKT-SSTYDLVEQMQYLYVRVVKARDISLFGGGEIVA 294
+K + + +G P L +D+ YDLV++M +LY+RV KA+ G + A
Sbjct: 244 IKPENVNRQDLIGSDLELPSLTRDQNRGGGYDLVDRMPFLYIRVAKAKRAKNDGSNPVYA 303
Query: 295 EVKLGNYRGITKRVSSNHLQWDQVFAFSKDCIQSSAAEIFVKESDKDDFLGRIWFDLNEV 354
++ +G G+ R S WDQVFAF K+ + S++ E+ V +K + +
Sbjct: 304 KLVIGT-NGVKTR-SQTGKDWDQVFAFEKESLNSTSLEVSVWSEEKIEKEDKTTTTTESC 361
Query: 355 PRRVPPDSQLAPQWYRMEDR--------RGDRSKGGEVMVSIWFGTQADEAFAEAWHSKA 406
V D Q P+ + ++S G +VM+++W GTQADEAF EAW S +
Sbjct: 362 LGTVSFDLQEVPKRVPPDSPLAPQWYTLESEKSPGNDVMLAVWLGTQADEAFQEAWQSDS 421
Query: 407 ANVHFDGLCSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFP--ELHAKAQVGNQ 464
+ + +SKVYLSPKLWYLR++VI+ QD+ G A + P EL+ KAQ+G Q
Sbjct: 422 GGL----IPETRSKVYLSPKLWYLRLTVIQTQDLQLGLGSEAKSKIPTTELYVKAQLGPQ 477
Query: 465 FLKT-RIA-APSATRSLS-NPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLI 521
KT R + PSA+ S S NP WNEDL+FV +EPFE +L+++VED + G+ +G+ I
Sbjct: 478 VFKTARTSIGPSASSSGSGNPTWNEDLVFVASEPFEPFLIVTVED-ITNGQS--IGQTKI 534
Query: 522 PVSAVERRTDDK-QVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEATL 580
+ +VERR DD+ + SRWFNL G+ K + RIH++V L+GGYHVLDEA
Sbjct: 535 HMGSVERRNDDRTEPKSRWFNLA------GDEK--KPYSGRIHVKVCLEGGYHVLDEAAH 586
Query: 581 YSSDVKPTAKQLWKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRT 640
+SDV+P+AKQL KP IG+LE+GI GAT L+P+K ++G G+ DAY VAKYG KW+RTRT
Sbjct: 587 VTSDVRPSAKQLAKPPIGLLEVGIRGATNLLPVKTRDGTRGTTDAYVVAKYGPKWIRTRT 646
Query: 641 VVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLE 700
++D +P+WNEQYTW+V+DPCTV+T+GVFDN ++ + GRD R+GK+R+RLSTL+
Sbjct: 647 ILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDE-SGKQGRDVRVGKIRVRLSTLD 705
Query: 701 SDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSCANLVNMLHMYAMPLLPKMHYVHPLSVH 760
+R+Y +SY L ++ PSG KKMGE+ +AVRFSC + ++++ Y P+LP+MHYV PL
Sbjct: 706 MNRIYLNSYTLTVILPSGAKKMGEVEIAVRFSCPSWLSIIQAYVTPMLPRMHYVRPLGPA 765
Query: 761 QLETLRYQALNVVSSWLNRAEPPLGRE 787
Q + LR+ A+ +V++ L R+EPPLG+E
Sbjct: 766 QQDILRHTAMRIVTARLARSEPPLGQE 792
|
|
| TAIR|locus:2182305 AT5G12970 "AT5G12970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1839 (652.4 bits), Expect = 9.8e-190, P = 9.8e-190
Identities = 350/553 (63%), Positives = 438/553 (79%)
Query: 241 EFSLKETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDI---SLFGGGEIVAEVK 297
+F+LKETSP +G G + DK STYDLVEQM YLYVRVVKA+++ + G + EVK
Sbjct: 9 DFALKETSPKIGAGSVTGDKLCSTYDLVEQMHYLYVRVVKAKELPGKDVTGSCDPYVEVK 68
Query: 298 LGNYRGITKRVSS-NHLQWDQVFAFSKDCIQSSAAEIFVKESDK--DDFLGRIWFDLNEV 354
LGNYRG+TK ++ +W QVFAFSK+ IQ+S E+ VK+ D DD +GRI FDLNE+
Sbjct: 69 LGNYRGMTKHFEKRSNPEWKQVFAFSKERIQASILEVVVKDKDVVLDDLIGRIMFDLNEI 128
Query: 355 PRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGTQADEAFAEAWHSKAANVHFDGL 414
P+RVPPDS LAPQWYR+EDR G + KG E+M+++W GTQADEAF++AWHS AA V +G+
Sbjct: 129 PKRVPPDSPLAPQWYRLEDRHGRKVKG-ELMLAVWMGTQADEAFSDAWHSDAATVGPEGV 187
Query: 415 CSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPS 474
++SKVYLSPKLWY+RV+VIEAQD++P DK +FPE++ KA +GNQ L+TRI S
Sbjct: 188 THIRSKVYLSPKLWYVRVNVIEAQDLIPHDK----TKFPEVYVKAMLGNQTLRTRI---S 240
Query: 475 ATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQ 534
T++L NP WNEDL+FVVAEPFE+ L+++VED V P KDE +G+ IP+ V+RR D +
Sbjct: 241 QTKTL-NPMWNEDLMFVVAEPFEEALILAVEDRVAPNKDETLGRCAIPLQNVQRRLDHRP 299
Query: 535 VVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEATLYSSDVKPTAKQLWK 594
+ SRWFNLE H +GE K + +F SRIHLR+ L+GGYHVLDE+T YSSD++PTAKQLWK
Sbjct: 300 LNSRWFNLEKHIMVEGEQKEI-KFASRIHLRIFLEGGYHVLDESTHYSSDLRPTAKQLWK 358
Query: 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYT 654
P IG+LE+GI+ A GLMPMK K+GKG + DAYCVAKYGQKW+RTRT+VDS +PKWNEQYT
Sbjct: 359 PSIGLLEVGIISAHGLMPMKSKDGKG-TTDAYCVAKYGQKWIRTRTIVDSFTPKWNEQYT 417
Query: 655 WEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLML 714
WEVFD CTVIT G FDN I G+D RIGKVRIRLSTLE+DR+YTHSYPLL+
Sbjct: 418 WEVFDTCTVITFGAFDN-----GHIPGGSGKDLRIGKVRIRLSTLEADRIYTHSYPLLVF 472
Query: 715 HPSGVKKMGELHLAVRFSCANLVNMLHMYAMPLLPKMHYVHPLSVHQLETLRYQALNVVS 774
HPSG+KK GE+ LAVRF+C +L+NMLHMY+ PLLPKMHY+HPLSV QL++LR+QA+N+VS
Sbjct: 473 HPSGIKKTGEIQLAVRFTCLSLINMLHMYSQPLLPKMHYIHPLSVLQLDSLRHQAMNIVS 532
Query: 775 SWLNRAEPPLGRE 787
+ LNRAEPPL +E
Sbjct: 533 ARLNRAEPPLRKE 545
|
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| TAIR|locus:2019070 QKY "AT1G74720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1283 (456.7 bits), Expect = 2.6e-160, Sum P(2) = 2.6e-160
Identities = 274/573 (47%), Positives = 368/573 (64%)
Query: 241 EFSLKETSPHLGGGPLNKDK-TSSTYDLVEQMQYLYVRVVKARDISLFGGGEIVAEVKLG 299
++S + + GGG +K T Y+LVE MQYL+VR+VKAR + +V+
Sbjct: 303 DYSPRVINSKTGGGETTMEKKTHHPYNLVEPMQYLFVRIVKARGLP--PNESAYVKVRTS 360
Query: 300 NYRGITKRV------SSNHLQWDQVFAF----SKDCIQSSAAEIFVKESDKDDFLGRIWF 349
N+ +K S + +W+QVFA S + + EI ++ + FLG + F
Sbjct: 361 NHFVRSKPAVNRPGESVDSPEWNQVFALGHNRSDSAVTGATLEISAWDASSESFLGGVCF 420
Query: 350 DLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKG---GEVMVSIWFGTQADEAFAEAWHSKA 406
DL+EVP R PPDS LAPQWYR+E D++ G G++ +S+W GTQ DEAF EAW S A
Sbjct: 421 DLSEVPVRDPPDSPLAPQWYRLEGSGADQNSGRISGDIQLSVWIGTQVDEAFPEAWSSDA 480
Query: 407 ANVHFDGLCSLKSKVYLSPKLWYLRVSVIEAQD--IVPGDKGSAMMRFPELHAKAQVGNQ 464
+V +SKVY SPKLWYLRV+V+EAQD I P + PE+ KAQ+G Q
Sbjct: 481 PHV-----AHTRSKVYQSPKLWYLRVTVLEAQDLHIAPN---LPPLTAPEIRVKAQLGFQ 532
Query: 465 FLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVS 524
+TR S + W+ED++FV EP ED L++ VED + ++G +IPVS
Sbjct: 533 SARTRRG--SMNNHSGSFHWHEDMIFVAGEPLEDCLVLMVEDRTTK-EATLLGHAMIPVS 589
Query: 525 AVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGS------RIHLRVSLDGGYHVLDEA 578
++E+R D++ V S+W LE G G G RI LR+ L+GGYHVL+EA
Sbjct: 590 SIEQRIDERFVPSKWHTLEGEGGGGGGGGGPGGGGGGGPYCGRISLRLCLEGGYHVLEEA 649
Query: 579 TLYSSDVKPTAKQLWKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRT 638
SD +PTAKQLWKP IG+LE+GILGA GL+PMK K G GS DAYCVAKYG+KWVRT
Sbjct: 650 AHVCSDFRPTAKQLWKPPIGILELGILGARGLLPMKAKNGGKGSTDAYCVAKYGKKWVRT 709
Query: 639 RTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLST 698
RT+ DS P+W+EQYTW+V+DPCTV+TVGVFDN + + ++ D+RIGK+RIR+ST
Sbjct: 710 RTITDSFDPRWHEQYTWQVYDPCTVLTVGVFDNWRMFSDASDDRP--DTRIGKIRIRVST 767
Query: 699 LESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSCANLV-NMLHMYAMPLLPKMHYVHPL 757
LES++VYT+SYPLL+L PSG+KKMGE+ +AVRF+C +L+ ++ Y PLLP+MHY+ PL
Sbjct: 768 LESNKVYTNSYPLLVLLPSGMKKMGEIEVAVRFACPSLLPDVCAAYGQPLLPRMHYIRPL 827
Query: 758 SVHQLETLRYQALNVVSSWLNRAEPPLGRESMR 790
V Q + LR A +V++WL RAEPPLG E +R
Sbjct: 828 GVAQQDALRGAATKMVAAWLARAEPPLGPEVVR 860
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 971 | |||
| pfam08372 | 156 | pfam08372, PRT_C, Plant phosphoribosyltransferase | 3e-94 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 2e-69 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 1e-61 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 7e-56 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 4e-55 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 6e-19 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 2e-18 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 9e-18 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 3e-17 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 4e-15 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 5e-15 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 2e-14 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 5e-13 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 6e-13 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 1e-12 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 1e-12 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 5e-12 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 5e-12 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 8e-12 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 3e-11 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 7e-11 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 9e-11 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 2e-10 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 2e-10 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 2e-10 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 5e-10 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 3e-09 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 3e-09 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 5e-09 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 6e-09 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 9e-09 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 1e-08 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 3e-08 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 3e-08 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 5e-08 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 6e-08 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 8e-08 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 1e-07 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 1e-07 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 1e-07 | |
| cd08406 | 136 | cd08406, C2B_Synaptotagmin-12, C2 domain second re | 1e-07 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 2e-07 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 2e-07 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 2e-07 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 2e-07 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 3e-07 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 3e-07 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 3e-07 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 7e-07 | |
| cd08401 | 121 | cd08401, C2A_RasA2_RasA3, C2 domain first repeat p | 7e-07 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 7e-07 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 8e-07 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 1e-06 | |
| cd08390 | 123 | cd08390, C2A_Synaptotagmin-15-17, C2A domain first | 1e-06 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 2e-06 | |
| cd04020 | 162 | cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat | 2e-06 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 4e-06 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 5e-06 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 5e-06 | |
| cd04039 | 108 | cd04039, C2_PSD, C2 domain present in Phosphatidyl | 5e-06 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 1e-05 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 2e-05 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 3e-05 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 3e-05 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 4e-05 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 4e-05 | |
| cd04047 | 110 | cd04047, C2B_Copine, C2 domain second repeat in Co | 4e-05 | |
| cd08383 | 117 | cd08383, C2A_RasGAP, C2 domain (first repeat) of R | 5e-05 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 6e-05 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 6e-05 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 7e-05 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 9e-05 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 1e-04 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 1e-04 | |
| cd04010 | 148 | cd04010, C2B_RasA3, C2 domain second repeat presen | 1e-04 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 2e-04 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 2e-04 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 2e-04 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 2e-04 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 3e-04 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 3e-04 | |
| cd08383 | 117 | cd08383, C2A_RasGAP, C2 domain (first repeat) of R | 3e-04 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 7e-04 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 7e-04 | |
| cd08691 | 137 | cd08691, C2_NEDL1-like, C2 domain present in NEDL1 | 7e-04 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 9e-04 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 9e-04 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 0.001 | |
| cd04039 | 108 | cd04039, C2_PSD, C2 domain present in Phosphatidyl | 0.001 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 0.001 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 0.001 | |
| cd08400 | 126 | cd08400, C2_Ras_p21A1, C2 domain present in RAS p2 | 0.001 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 0.001 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 0.001 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 0.002 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 0.002 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 0.002 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 0.002 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 0.003 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 0.003 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 0.003 | |
| cd08521 | 123 | cd08521, C2A_SLP, C2 domain first repeat present i | 0.003 | |
| cd04021 | 125 | cd04021, C2_E3_ubiquitin_ligase, C2 domain present | 0.003 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 0.004 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 0.004 |
| >gnl|CDD|192017 pfam08372, PRT_C, Plant phosphoribosyltransferase C-terminal | Back alignment and domain information |
|---|
Score = 294 bits (754), Expect = 3e-94
Identities = 108/156 (69%), Positives = 129/156 (82%)
Query: 816 IPAILLYLSLLGLWRYRSRSRHPPHMDIRLSQADSVFPDELDEEFDSFPTSRGADIVRIR 875
+P I LYL ++GLW YR R RHPPHMD RLS AD+ PDELDEEFD+FPTSR D+VR+R
Sbjct: 1 LPTIFLYLFVIGLWNYRFRPRHPPHMDTRLSHADAAHPDELDEEFDTFPTSRPPDVVRMR 60
Query: 876 YDRLRSVAGRIQTVVGDMATQGERFQALISWRDPRATFLFVIFCLFAAIGFYAVPVRVVF 935
YDRLRSVAGR+QTVVGD+ATQGER QAL+SWRDPRAT +FV+FCL AA+ Y VP +VV
Sbjct: 61 YDRLRSVAGRVQTVVGDIATQGERLQALLSWRDPRATAIFVLFCLVAAVVLYVVPFKVVA 120
Query: 936 ALSGVYVLRPPRFRSKLPSPALSFFRRLPSKADTLL 971
L+G Y LR PRFRS++PS L+FFRRLPS+ D++L
Sbjct: 121 LLAGFYYLRHPRFRSRMPSVPLNFFRRLPSRTDSML 156
|
This domain is found at the C-terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (pfam00168). Length = 156 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 227 bits (581), Expect = 2e-69
Identities = 96/159 (60%), Positives = 120/159 (75%), Gaps = 9/159 (5%)
Query: 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDL 488
YLRV+VIEAQD+VP DK R PE+ KAQ+GNQ L+TR PS TR+ NP WNE+L
Sbjct: 1 YLRVTVIEAQDLVPSDKN----RVPEVFVKAQLGNQVLRTR---PSQTRNG-NPSWNEEL 52
Query: 489 LFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHFGN 548
+FV AEPFED+L++SVED VGP KDE +G+ +IP++ +ERR DD+ V SRWF+LE G
Sbjct: 53 MFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLE-RPGG 111
Query: 549 QGESKVVTRFGSRIHLRVSLDGGYHVLDEATLYSSDVKP 587
E K +F SRIHLR+ LDGGYHVLDE+T YSSD++P
Sbjct: 112 AMEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 1e-61
Identities = 90/131 (68%), Positives = 102/131 (77%), Gaps = 6/131 (4%)
Query: 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVF 658
+LE+GILGA GL ++ K+G+G S DAYCVAKYG KWVRTRTV DS +P+WNEQYTW V+
Sbjct: 1 ILEVGILGAQGLDVLRAKDGRG-STDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVY 59
Query: 659 DPCTVITVGVFDNC-SLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPS 717
DPCTV+TVGVFDN S K + D IGKVRIRLSTLE DRVY HSYPLL L+PS
Sbjct: 60 DPCTVLTVGVFDNSQSHWKEAVQP----DVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPS 115
Query: 718 GVKKMGELHLA 728
GVKKMGEL A
Sbjct: 116 GVKKMGELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 7e-56
Identities = 72/123 (58%), Positives = 91/123 (73%), Gaps = 5/123 (4%)
Query: 273 YLYVRVVKARDISLFGGGEIVAEVKLGNYRGITKRVSSN-HLQWDQVFAFSKDCIQSSAA 331
YLYVRVVKAR + + V EVKLGNY+G TK + + +W+QVFAFSKD +Q S
Sbjct: 1 YLYVRVVKARGLPA-NSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTL 59
Query: 332 EIFVKESDK--DDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIW 389
E+ V + DK DDFLG + FDL+EVP RVPPDS LAPQWYR+ED++G R GGE+M+++W
Sbjct: 60 EVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGR-VGGELMLAVW 118
Query: 390 FGT 392
FGT
Sbjct: 119 FGT 121
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 4e-55
Identities = 69/128 (53%), Positives = 91/128 (71%), Gaps = 1/128 (0%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
KLVVEV+ A +LMPKDG+GSSS +VE++F+ Q RT+ K KDLNP+WNEKLVF+V D +
Sbjct: 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSR 60
Query: 67 LPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEI 126
L +EV V+N+RRS R+FLG+VR + EA Q Y LEKR LFS +RGEI
Sbjct: 61 LSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVP-PSEAVVQRYPLEKRGLFSRVRGEI 119
Query: 127 SLKLFVST 134
LK++++
Sbjct: 120 GLKVYITD 127
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 6e-19
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFDVPDI 64
L V VI+A NL PKD G S P+V+V +K +T+V LNP+WNE F+V
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTL- 59
Query: 65 AELPYKHIEVNVFNERRSSNSRNFLGKVR 93
EL + + V++ R F+G+V
Sbjct: 60 PEL--AELRIEVYDYDRFGKDD-FIGEVT 85
|
Length = 85 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 2e-18
Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEF-EKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
L V VI A NL KD G S P+V+V KQ +T+V LNP+WNE F V D
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60
Query: 67 LPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGE 105
+ V V+++ R S FLG+V P S+L + E
Sbjct: 61 ---DTLTVEVWDKDRFSKDD-FLGEVEIPLSELLDSGKE 95
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 9e-18
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFDVPD 63
L V++I+A NL PKD G S P+V+V K+ +T+V LNP+WNE F+VP
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 64 IAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEG 104
+E+ V+++ R F+G+V P S L
Sbjct: 61 PEL---AELEIEVYDKDRFGRDD-FIGQVTIPLSDLLLGGR 97
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 3e-17
Identities = 45/125 (36%), Positives = 63/125 (50%), Gaps = 9/125 (7%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAEL 67
L V+VI A L D G S PF +E L+T YK LNP WN+ F + DI
Sbjct: 3 LQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI--- 59
Query: 68 PYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEIS 127
+ +EV V++E + FLGKV P + KN GE + Y L+ + L + +G I
Sbjct: 60 -HDVLEVTVYDEDK-DKKPEFLGKVAIPLLSI-KN-GE--RKWYALKDKKLRTRAKGSIL 113
Query: 128 LKLFV 132
L++ V
Sbjct: 114 LEMDV 118
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 4e-15
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 16/115 (13%)
Query: 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-QKWVRTRTVVDSLSPKWNEQYTWEVF 658
L + ++ A L G D Y G ++ +T+ V ++L+P WNE + + V
Sbjct: 1 LRVTVIEARNLPAK----DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVL 56
Query: 659 DP-CTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDR-VYTHSYPL 711
DP +TV V+D + +D +G+V I LS L PL
Sbjct: 57 DPESDTLTVEVWD---------KDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 5e-15
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVE--FEKQIL---RTQVKYKDLNPIWNEKLVFD 60
E+L V V+ A NL P DG+G S P+V+V + L +T VK LNP++NE FD
Sbjct: 14 ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD 73
Query: 61 VPDIAELPYKHIEVNVFNERRSSNSRNFLGKVR 93
VP +L + + V ++ + +G+V
Sbjct: 74 VPA-EQLEEVSLVITVVDKDSVGRNE-VIGQVV 104
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-14
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 17/98 (17%)
Query: 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWV---RTRTVVDSLSPKWNEQYTWE 656
L + ++ A L P G D Y G + +T+ V ++L+P WNE +T+E
Sbjct: 1 LRVTVISAKNLPPKD----LNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFE 56
Query: 657 VFDP-CTVITVGVFDNCSLDKNIINNSGGRDSRIGKVR 693
V P + + V+D G+D IG+V
Sbjct: 57 VTLPELAELRIEVYDYDRF---------GKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 5e-13
Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 18/135 (13%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQI-------LRTQVKYKDLNPIWNEKLVFD 60
L V+V+A +L KD G+S P+V++ ++T+ K LNP WNE+ F
Sbjct: 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61
Query: 61 VPDIAELPYKH-IEVNVFNERRSSNSRNFLGKVRAPCSQLC----KNEGEATAQLYTLEK 115
V P +H + VF+E R + +FLG+V P + L NE T + Y L
Sbjct: 62 VN-----PREHRLLFEVFDENRLTRD-DFLGQVEVPLNNLPTETPGNERRYTFKDYLLRP 115
Query: 116 RSLFSHIRGEISLKL 130
RS S ++G + L +
Sbjct: 116 RSSKSRVKGHLRLYM 130
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 6e-13
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 17/107 (15%)
Query: 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ---KWVRTRTVVDSLSPKWNEQYTW 655
L + I+ A L P KGG D Y + +T+ V ++L+P WNE + +
Sbjct: 1 TLTVKIISARNLPPKD----KGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEF 56
Query: 656 EVFDPCT-VITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLES 701
EV P + + V+D GRD IG+V I LS L
Sbjct: 57 EVPPPELAELEIEVYDKDRF---------GRDDFIGQVTIPLSDLLL 94
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-12
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEF-------EKQILRTQVKYKDLNPIWNEKLVF 59
KL+V V NL P D P+V + ++ +T VK +LNP+++E F
Sbjct: 17 KLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRR--KTSVKKDNLNPVFDETFEF 74
Query: 60 DVPDIAELPYKHIEVNVFNERRS-SNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114
V + EL + ++V V N + S + LG+V S L + + Q Y L
Sbjct: 75 PVS-LEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDL--DLSKGFTQWYDLT 127
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 1e-12
Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 18/134 (13%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
K+ + V+ A L+ KD G+S P+V V+ K RT+ ++LNP+WNEK F+ + ++
Sbjct: 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSD 61
Query: 67 LPYKHIEVNVFNERRSSNSR----------NFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116
I+V V++E SR +FLG+ L GE Y LEKR
Sbjct: 62 ----RIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTL---SGEMDV-WYNLEKR 113
Query: 117 SLFSHIRGEISLKL 130
+ S + G I L +
Sbjct: 114 TDKSAVSGAIRLHI 127
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 5e-12
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQ---FLKTRIAAPSATRSLSNPCWNE 486
LRV+VI A+++ P D + + K +G Q KT++ ++ NP WNE
Sbjct: 1 LRVTVISAKNLPPKDLNG----KSDPYVKVSLGGQKKDTKKTKVV-----KNTLNPVWNE 51
Query: 487 DLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKV 519
F V P L I V D+ GKD+ +G+V
Sbjct: 52 TFTFEVTLPELAELRIEVYDYDRFGKDDFIGEV 84
|
Length = 85 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 5e-12
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFL---KTRIAAPSATRSLSNPCWN 485
L V +I A+++ P DKG + + K + KT++ ++ NP WN
Sbjct: 1 TLTVKIISARNLPPKDKGG----KSDPYVKVSLDGDPKEKKKTKVV-----KNTLNPVWN 51
Query: 486 EDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERR 529
E F V P L I V D G+D+ +G+V IP+S +
Sbjct: 52 ETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLG 95
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 8e-12
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLL 489
LRV+VIEA+++ D + ++ G Q KT++ + NP WNE
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLG---GKQKFKTKVVKNT-----LNPVWNETFE 52
Query: 490 FVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNL 542
F V +P D L + V D KD+ +G+V IP+S + D + W L
Sbjct: 53 FPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELL---DSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 3e-11
Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 23/140 (16%)
Query: 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWV--RTRTVVDSLSPKWNEQ-Y 653
IGVL + I A GL K + GG+VD Y + RT+ D+ +P WNE Y
Sbjct: 1 IGVLAVTIKSARGL---KGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKY 57
Query: 654 TWEVFDPCTVITVGVFDNCSLDKNIINNSGGR-DSRIGKVRIRLSTLESDRVYTH-SYPL 711
I V L+ + + + R D IG LS+L + + + L
Sbjct: 58 ----------ILVNSLTE-PLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNL 106
Query: 712 LMLHPSGVKKMGELHLAVRF 731
L K +GEL+ +RF
Sbjct: 107 L----RNGKPVGELNYDLRF 122
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 7e-11
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 9 VVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDI-AEL 67
V V+ A L+ K G++ +V ++ K+ T VK K +P+W E+ F++P + +
Sbjct: 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGN 61
Query: 68 PYKH-IEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE-KRSLFSHIRGE 125
+ +++ V + R FLG+V P + L +++G + + LE K RGE
Sbjct: 62 GNRATLQLTVMH-RNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGE 120
Query: 126 I 126
I
Sbjct: 121 I 121
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 9e-11
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-------QILRTQVKYKDLNPIWNEKLV 58
+ L VE++ A NL+P D GSS PFV+VE +TQVK K L P+++E
Sbjct: 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFE 75
Query: 59 FDVPD 63
F+VP
Sbjct: 76 FNVPP 80
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-10
Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 17/113 (15%)
Query: 604 ILGATGLMPMKFKEGKGGSVDAYCVAKY-GQKWVRTRTVVDSLSPKWNEQYTWEVFDPCT 662
++ A LMP K+G+G S AY + GQK RTRT L+P WNE+ + V DP
Sbjct: 6 VVDAQDLMP---KDGQG-SSSAYVELDFDGQK-KRTRTKPKDLNPVWNEKLVFNVSDP-- 58
Query: 663 VITVGVFDNCSLDKNIIN--NSGGRDSRIGKVRIRLSTL--ESDRVYTHSYPL 711
N L+ + N SG R S +G+VRI ++ S+ V YPL
Sbjct: 59 ----SRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQR-YPL 106
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-10
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 3 DGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKL 57
+L+V V+ A +L P+D +P+V+V EK RT+ K LNP WN+
Sbjct: 13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTF 72
Query: 58 VFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKV 92
+ L + +EV V++ R + +FLG+V
Sbjct: 73 EYSNVRRETLKERTLEVTVWDYDRDGEN-DFLGEV 106
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-10
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFE-KQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
L V+VI+A NL D G S PFV+ +++ +T+ K LNP+WNE VP
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRV- 59
Query: 67 LPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQL 99
++V V++ R + LG S L
Sbjct: 60 --RAVLKVEVYDWDR-GGKDDLLGSAYIDLSDL 89
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 5e-10
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVFDVP 62
L+V +I NL D G S PFV++ +K +TQVK K LNP +NE+ +D+
Sbjct: 15 LIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIK 74
Query: 63 DIAELPYKHIEVNVFNERRSSNSRNFLGKV 92
++L K +E+ V+++ S +++G +
Sbjct: 75 H-SDLAKKTLEITVWDKDIGK-SNDYIGGL 102
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 3e-09
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 11/101 (10%)
Query: 8 LVVEVIAAHNLMPKD------GEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDV 61
L + VI A +L+ KD +G S P+V V Q +++V ++LNP WNE V++
Sbjct: 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNE--VYEA 60
Query: 62 PDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKN 102
+ E+P + +E+ +F+E + +FLG++ + K
Sbjct: 61 V-VDEVPGQELEIELFDEDPDKD--DFLGRLSIDLGSVEKK 98
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 3e-09
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSS--SPFVEVEF------EKQILRTQVKYKD-LNPIWNE 55
L +++I+ L G+ S P+VEVE + +T+V + NP+WNE
Sbjct: 1 PLTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNE 60
Query: 56 KLVFDV--PDIA 65
FDV P++A
Sbjct: 61 TFEFDVTVPELA 72
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 5e-09
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVE-----VEFEKQILRTQVKYKDLNPIWNEKLVF 59
L +I A L D G S P+V+ + LRT+ +K NP +NE L +
Sbjct: 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTY 73
Query: 60 DVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNE 103
++ K + + V +E R N +FLG+ R P +L N+
Sbjct: 74 YGITEEDIQRKTLRLLVLDEDRFGN--DFLGETRIPLKKLKPNQ 115
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 6e-09
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 9/62 (14%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEV-------EFEKQILRTQVKYKDLNPIWNEKLVFD 60
+ V +I A NL D G+S P+V+V EK+ +T +K + LNP++NE +F+
Sbjct: 17 ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKK--KTVIKKRTLNPVFNESFIFN 74
Query: 61 VP 62
+P
Sbjct: 75 IP 76
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 9e-09
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEF-------EKQILRTQVKYKDLNPIWNEKLV 58
KL VEV A NL+P D G S P+V+++ KQ +T+ K LNP+WNE
Sbjct: 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQ--KTKTIKKTLNPVWNETFT 70
Query: 59 FDVPDIAELPYKHIEV 74
FD+ + IEV
Sbjct: 71 FDLKPADKDRRLSIEV 86
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-08
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFD 60
L ++++ A L KD G+S PFV++ +K L T+VK K+LNP WNE +F+
Sbjct: 18 LTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFE 73
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-08
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFDV 61
+L V +I A +L D G+S P+V+V +K+ T+V K LNP++NE F V
Sbjct: 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKV 74
Query: 62 PDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAP 95
P +EL K + +V++ R S + +G+VR P
Sbjct: 75 P-YSELGNKTLVFSVYDFDRFS-KHDLIGEVRVP 106
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-08
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 29/88 (32%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFV-----------------------------EVEFEK 37
L V VI A L+ KD G S P+ + K
Sbjct: 29 VLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAK 88
Query: 38 QILRTQVKYKDLNPIWNEKLVFDVPDIA 65
I T+VK + LNP+WNE F+V D++
Sbjct: 89 SIKVTEVKPQTLNPVWNETFRFEVEDVS 116
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 5e-08
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 16/119 (13%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFP--ELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNED 487
LR+ VIEAQD+V DK + + + +VG Q K+++ +L NP WNE
Sbjct: 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKV----IKENL-NPKWNEV 57
Query: 488 LLFVVAEPFEDYLLISV--EDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLEN 544
VV E L I + ED P KD+ +G++ I + +VE+ K + W LE+
Sbjct: 58 YEAVVDEVPGQELEIELFDED---PDKDDFLGRLSIDLGSVEK----KGFIDEWLPLED 109
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-08
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 610 LMPMKFKEG-------KGGSVDAYCVAKYGQKWV-RTRTVVDSLSPKWNEQYTWEVFDPC 661
+ + KEG +GG+ D Y KYG K V +++T+ +L+P W+E++T + D
Sbjct: 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVT 60
Query: 662 TVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKK 721
+ + VFD D+ G D +G + LSTLE ++ L P+ +
Sbjct: 61 QPLYIKVFD---YDR------GLTDDFMGSAFVDLSTLELNKPTEVKLKL--EDPNSDED 109
Query: 722 MGELHLAV 729
+G + L V
Sbjct: 110 LGYISLVV 117
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 8e-08
Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 273 YLYVRVVKARDISLFGGGEIV---AEVKLGNYRGITKR----VSSNHLQWDQVFAFSKDC 325
L V+++ AR++ G +V L K+ ++ + W++ F F
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 326 IQSSAAEIFVKESD---KDDFLGRIWFDLNEVPRRVPPD 361
+ + EI V + D +DDF+G++ L+++ +
Sbjct: 61 PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHE 99
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-07
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 23/135 (17%)
Query: 598 GVLEMGILGATGLMP--MKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTW 655
GVL + ++ A L+ G D Y + + G + +++ + ++L+PKWNE Y
Sbjct: 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVY-- 58
Query: 656 EVF---DPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712
E P + + +FD +D +G++ I L ++E PL
Sbjct: 59 EAVVDEVPGQELEIELFD----------EDPDKDDFLGRLSIDLGSVEKKGFIDEWLPL- 107
Query: 713 MLHPSGVKKMGELHL 727
VK G LHL
Sbjct: 108 ----EDVKS-GRLHL 117
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-07
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFDVPDI 64
L V++I A NL P+D G++ P+ +V ++++ K LNP ++E VF+VP
Sbjct: 18 LNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVP-P 76
Query: 65 AELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQL 99
ELP + +EV +++ + S +G V P +++
Sbjct: 77 QELPKRTLEVLLYDFDQFSRDE-CIGVVELPLAEV 110
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 20/105 (19%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEV----EFEKQILRTQVKYKDLNPIWNEKLVFDVPD 63
L V V+ +L K G+ PF V + RT+VK K NP ++E F++
Sbjct: 1 LSVRVLECRDLALKSN-GTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
Query: 64 IAELPYKHIE------------VNVFNERRSSNSRN-FLGKVRAP 95
K + V +++ S S + FLG+VR P
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHA--SMVSGDDFLGEVRIP 102
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-07
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 5/65 (7%)
Query: 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEV---EFEKQIL--RTQVKYKDLNPIWNEKLVFD 60
E+L V V+ A NL+ +G+ ++ PFV+V + ++I +T VK D NPI+NE ++F
Sbjct: 15 ERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFS 74
Query: 61 VPDIA 65
VP I
Sbjct: 75 VPAIV 79
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 13/104 (12%)
Query: 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEV 657
G L++ ++ A+GL GG D +CV + ++T T+ +L+P+WN+ +T+ +
Sbjct: 1 GFLQVKVIRASGLAAADI----GGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPI 56
Query: 658 FDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLES 701
D V+ V V+D DK+ + +GKV I L ++++
Sbjct: 57 KDIHDVLEVTVYDE---DKD------KKPEFLGKVAIPLLSIKN 91
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
L V V+ NL +D SS P+V + Q ++T+V K+LNP+WNE+L VP+
Sbjct: 3 LLKVRVVRGTNLAVRD-FTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPN--- 58
Query: 67 LPYKHIEVNVFNERRSS 83
P +++ VF++ S
Sbjct: 59 -PMAPLKLEVFDKDTFS 74
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 621 GSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFD 670
S D Y V G + V+TR + +L+P WNE+ T V +P + + VFD
Sbjct: 20 TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFD 69
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-07
Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
+L V+ A +L PKD G+S PFV V + Q L T V K P WNE F++ + A+
Sbjct: 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGAD 60
Query: 67 LPYKHIEVNVFN-ERRSSNSRNFLGKVRAPCSQL 99
P + V V++ + S N +FLGKV L
Sbjct: 61 SP---LSVEVWDWDLVSKN--DFLGKVVFSIQTL 89
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-07
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFE-KQILRTQVKYKDLNPIWNEKLVFDVPDIA 65
+L + + NL +D G+S P+V+ ++ K + +++ YK+LNP+W+EK + D
Sbjct: 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIED-- 58
Query: 66 ELPYKHIEVNVF 77
+ + + VF
Sbjct: 59 --VTQPLYIKVF 68
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 3e-07
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 15 AHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYK---- 70
A +L+ D G S PF V F Q T+V + L+P W++ L+FD ++ P +
Sbjct: 10 ARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQN 69
Query: 71 --HIEVNVFNERRSSNSRNFLGKVRA 94
+ V +F+ + S FLG+ A
Sbjct: 70 PPLVVVELFD-QDSVGKDEFLGRSVA 94
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-07
Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 8 LVVEVIAAHNLMPKD--GEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIA 65
L V V+ A +L KD G+G S P+ + Q +TQ LNP WN + P I
Sbjct: 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYW--CEFP-IF 59
Query: 66 ELPYKHIEVNVFNERRSSNSRNFLGKVRAP-CSQLCKNEGEATAQLYTLE-KRSLF-SHI 122
+ +++ ++++ R + +++LG+ + + + TL+ R S +
Sbjct: 60 SAQNQLLKLILWDKDRFAG-KDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVV 118
Query: 123 RGEISLKLFV 132
GEI L+
Sbjct: 119 SGEIHLQFSW 128
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 7e-07
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQIL--RTQVKYKDLNPIWNEKLVFDV 61
+L V V+ A +L D G + P+V+V +K+I +T VK LNP++NE VFD+
Sbjct: 16 RLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDI 75
Query: 62 PDIAELPYKHIEVNVFN-ERRSSN 84
P EL +E V + +R + N
Sbjct: 76 PS-EELEDISVEFLVLDSDRVTKN 98
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-07
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 624 DAYCVAKYGQKWV-RTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNS 682
D YC Q+ V RT+TV SL P + E + +E+ ++ ++D ++++
Sbjct: 23 DCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYD-----RDVLR-- 75
Query: 683 GGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHP-SGVKKMGELHLAVRF 731
RDS IGKV I+ L +PL + S V+ G++HL +R
Sbjct: 76 --RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQ--GKVHLELRL 121
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 7e-07
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILR-----TQVKYKDLNPIWNEKLVFDV 61
+L + +I A NL D G S P+V+V + R T VK LNP +NE LVFDV
Sbjct: 15 RLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDV 74
Query: 62 P 62
P
Sbjct: 75 P 75
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 8e-07
Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Query: 10 VEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPY 69
V V +A L +D G + P+V ++ E + +R+ V+ L+P ++ + +F P
Sbjct: 7 VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKK----PR 62
Query: 70 KHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLK 129
I++ V+N FLG+ T L + + + G IS+K
Sbjct: 63 SPIKIQVWNSNLL--CDEFLGQATLSADPNDSQT-LRTLPLRKRGRDAA-GEVPGTISVK 118
Query: 130 LFVST 134
+ S
Sbjct: 119 VTSSD 123
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 3 DGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVP 62
G +L+V ++ +L P + G S P+ EV Q +T+V LNP WN + F V
Sbjct: 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVK 71
Query: 63 DIAELPYKHIEVNVFNERRSSNSRN-FLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSH 121
D+ + + + VF+ R S + FLG+ + + K E+ + KR L
Sbjct: 72 DLEQ---DVLCITVFD--RDFFSPDDFLGRTEIRVADILKETKESKG---PITKRLLLHE 123
Query: 122 I-RGEISLKL 130
+ GE+ +KL
Sbjct: 124 VPTGEVVVKL 133
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 4 GKEKLVVEVIAAHNLMPKDGE-GSSSPFVEVE---FEKQILRTQVKYKDLNPIWNEKLVF 59
+E+L V +I A NL P+ + PFV+V E++ L+++VK K NP ++E VF
Sbjct: 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVF 71
Query: 60 DVPDIAELPYKHIEVNVF-NERRSSNSRNFLGKVRAP 95
V EL + + ++V+ +R S +G V P
Sbjct: 72 QVS-FKELQRRTLRLSVYDVDRFS--RHCIIGHVLFP 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 21/134 (15%)
Query: 604 ILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTV 663
+ A GL K+ GG D Y + K + VR+ D+LSP+++ Q + P +
Sbjct: 9 VHSAEGL----SKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSP 64
Query: 664 ITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMG 723
I + V+ + N++ D +G+ LS +D + PL G G
Sbjct: 65 IKIQVW-----NSNLL-----CDEFLGQA--TLSADPNDSQTLRTLPLR---KRGRDAAG 109
Query: 724 EL--HLAVRFSCAN 735
E+ ++V+ + ++
Sbjct: 110 EVPGTISVKVTSSD 123
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVFDV 61
+L V V A NL G+S FV+ +K +T V K +NP+WN V+D
Sbjct: 28 ELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDG 87
Query: 62 PDIAELPYKHIEVNVFNERRSSNSRNFLGKVR 93
+L +E+ V++ + S++ FLG VR
Sbjct: 88 VSPEDLSQACLELTVWDHDKLSSND-FLGGVR 118
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQILR--TQVKYKDLNPIWNEKLVFDV 61
KL V ++ A NL D G S P+V++ K++ + T +K + LNP +NE F+V
Sbjct: 16 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEV 75
Query: 62 PDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCS 97
P ++ H+ V V + R + + +GKV C+
Sbjct: 76 P-FEQIQKVHLIVTVLDYDRIGKN-DPIGKVVLGCN 109
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-06
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 18/140 (12%)
Query: 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEV 657
GVL + ++ A L K + GKG S D Y + G + +T+T+ ++L+PKWN + +
Sbjct: 1 GVLRVHVVEAKDLAA-KDRSGKGKS-DPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPI 58
Query: 658 FDP-CTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHP 716
F ++ + ++D + G D + +V T +SD+ T L
Sbjct: 59 FSAQNQLLKLILWDKDRFAGK--DYLGEFDIALEEVFADGKTGQSDKWIT-------LKS 109
Query: 717 SGVKKM----GELHLAVRFS 732
+ K GE+HL +FS
Sbjct: 110 TRPGKTSVVSGEIHL--QFS 127
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 5e-06
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Query: 12 VIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDV---PDIAELP 68
V++ NL G +V F +T+V +LNP+WNE + + PD E
Sbjct: 2 VVSLKNLPGLKG--KGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDES- 58
Query: 69 YKHIEVNVFN-ERRSSNSRNFLGKVRAPCSQLCKN 102
+E+ V + E+ N +G L
Sbjct: 59 ---LEIVVKDYEKVGRNR--LIGSATVSLQDLVSE 88
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-06
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 29 PFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDV 61
PFV + F +++ RT + LNP++NE+L F+V
Sbjct: 28 PFVIISFGRRVFRTSWRRHTLNPVFNERLAFEV 60
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-05
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 16/107 (14%)
Query: 607 ATGLMPMKFKEGKGGSVDAYCVAKYG-QKWVRTRTVVDSLSPKWNEQYTWEVF-DPCTVI 664
L PM + G S D Y + G +K+ +++ +L+P+W EQ+ +F D ++
Sbjct: 9 GKNLPPM---DDNGLS-DPYVKFRLGNEKY-KSKVCSKTLNPQWLEQFDLHLFDDQSQIL 63
Query: 665 TVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPL 711
+ V+D ++G +D IG+ I LS L ++ ++ L
Sbjct: 64 EIEVWD---------KDTGKKDEFIGRCEIDLSALPREQTHSLELEL 101
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-05
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 604 ILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTV 663
+L A GL+ +GK G+ DAY + + G++ T + SP W E+ ++E+
Sbjct: 5 VLQARGLLC----KGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPG---- 56
Query: 664 ITVGVFDNCSLDKNIIN-NSGGRDSRIGKVRIRLSTLESD 702
+ G + +L +++ N G D +G+V I L+ L+ D
Sbjct: 57 LLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDED 96
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-05
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 12/112 (10%)
Query: 621 GSVDAYCVAKYGQKWV-RTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNII 679
GS D YC+ K + + RT TV +L+P W E+YT V P TV + LD++ +
Sbjct: 19 GSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYT--VHLPPGFHTVSFY---VLDEDTL 73
Query: 680 NNSGGRDSRIGKVRIRLSTLESD-RVYTHSYPLLMLHPSGVKKMGELHLAVR 730
RD IGKV + + + R L + P + GE+HL +
Sbjct: 74 ----SRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EVQGEIHLELS 120
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 28 SPFVEVEFEKQILRTQVKYKDLNPIWNEKLVF 59
P+VEV F Q ++T VK NP WNE++VF
Sbjct: 36 DPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVF 67
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQV-KYKDLNPIWNEKLVFDVPDIAE 66
L V +I+A L D G P+V ++ Q +++V K NP WNEK F V
Sbjct: 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGW 62
Query: 67 LPYKHIEVNVF 77
+ + +
Sbjct: 63 GGDTKLILRIM 73
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 4e-05
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 457 AKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIV 516
+ VG K+++ R+ +NP W E F+V P L I V+D + +
Sbjct: 25 VELTVGKTTQKSKVK----ERT-NNPVWEEGFTFLVRNPENQELEIEVKDD---KTGKSL 76
Query: 517 GKVLIPVSAVERRTDDKQVVSRWFNLEN 544
G + +P+S + + + + F L+N
Sbjct: 77 GSLTLPLSELL--KEPDLTLDQPFPLDN 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 4e-05
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 15/103 (14%)
Query: 13 IAAHNLMPKDGEGSSSPFVEVE------FEKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
+ L KD G S PF+E+ + RT+V LNP+W F +P + +
Sbjct: 7 FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP---FTIP-LQK 62
Query: 67 L----PYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGE 105
L + I++ V++ S +G+ +L K+
Sbjct: 63 LCNGDYDRPIKIEVYDYDSSGKHD-LIGEFETTLDELLKSSPL 104
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110 |
| >gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-05
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEF-EKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
L + ++ A NL K G+ P+ V + ++ RT+ K LNP W E+ VFD P +
Sbjct: 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDP-PPD 56
Query: 67 LPYKHIEVNVFNERRSSNSRNFLGKV 92
+ + + ++RS + +GKV
Sbjct: 57 VTFFTLSFYNK-DKRSKDRDIVIGKV 81
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-05
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQV-KYKDLNPIWNEKLVF 59
L V VI A +L+P D FV+ + Q+LRT+ + ++ NP WNE+L+F
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMF 54
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-05
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLL 489
L V V++AQD++P D + + EL F + + + L NP WNE L+
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVEL--------DFDGQKKRTRTKPKDL-NPVWNEKLV 52
Query: 490 FVVAEP---FEDYLLISVEDHVGPG-KDEIVGKVLIPVSAVERRTDDKQVVSRWFNLE 543
F V++P L + V + G + +G+V I ++ ++ V + + LE
Sbjct: 53 FNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEA---VVQRYPLE 107
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 7e-05
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 10 VEVIAAHNLMPKDGEGSSSPFV---EVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
+ ++ A NL G S P+V + +++I +T+ Y LNP W+E F++ A
Sbjct: 5 IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDE--EFELEVPAG 62
Query: 67 LPYKHIEVNVFNERRSSNSRNFLGK 91
P I V+ +R + G+
Sbjct: 63 EP-LWISATVW-DRSFVGKHDLCGR 85
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 9e-05
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDV--PDIA 65
L V + +A NL SP+VE+ K +++VK + NP+W E F V P+
Sbjct: 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQ 61
Query: 66 ELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEK 115
EL IEV + + LG + P S+L K Q + L+
Sbjct: 62 EL---EIEV------KDDKTGKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 274 LYVRVVKARDISLFGGGEIV---AEVKLGNYRGITKR--VSSNHL--QWDQVFAFSKDCI 326
L V V+ A+++ +V LG + TK+ V N L W++ F F
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 327 QSSAAEIFVKESD---KDDFLGRIW 348
+ + I V + D KDDF+G +
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 32/148 (21%), Positives = 52/148 (35%), Gaps = 35/148 (23%)
Query: 415 CSLKSKVYLSPKLWYLRVSVIEAQD-----------------IVPGDKGSAMMRFPELHA 457
+ +++ L+V+VIEA+ IVP + + + +
Sbjct: 21 REAEPPIFV------LKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKS 74
Query: 458 ---KAQVGNQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDE 514
KA + + I NP WNE F V + D L + + DH D+
Sbjct: 75 HRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDH----DDD 130
Query: 515 IVGKVLIPVSAVERRTDDKQVVSRWFNL 542
+G V IP+ + D WF L
Sbjct: 131 FLGCVNIPLKDLPSCGLD-----SWFKL 153
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 41/135 (30%), Positives = 57/135 (42%), Gaps = 21/135 (15%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEF----EKQIL-RTQVKYKDLNPIWNEKLVFDV 61
KL V VI +L K+G + P+ V +KQ RT+VK K NP ++E FDV
Sbjct: 1 KLSVRVIECSDLALKNG--TCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDV 58
Query: 62 P-------DIAELPYKHIE-----VNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQ 109
E+P + E V++++ FLG+VR P L G A
Sbjct: 59 TIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDV-FLGEVRIPLRGLDLQAGSHQAW 117
Query: 110 LYTLEKRSLFSHIRG 124
Y L+ R S G
Sbjct: 118 -YFLQPREEKSTPPG 131
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 12/104 (11%)
Query: 274 LYVRVVKARDISLFGGGEIV---AEVKLGNYRGITKRVSSNHL--QWDQVFAFSKDCIQS 328
L V V++AR++ +V LG + +V N L W++ F F +S
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60
Query: 329 SAAEIFVKESD---KDDFLGRIWFDLNEVPRRVPPDSQLAPQWY 369
+ V + D KDDFLG + L+E + + W
Sbjct: 61 DTLTVEVWDKDRFSKDDFLGEVEIPLSE----LLDSGKEGELWL 100
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 8 LVVEVIAAHNLMPKDGEGSS-SPFVEVEFEKQ--ILRTQVKYKDLNPIWNEKLVFDVPDI 64
L V + +A L D G + P+V + + RT+VK NP+WNE V +
Sbjct: 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSL 63
Query: 65 AE-LPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQL 99
E L ++ V FN++R +G S L
Sbjct: 64 TEPL---NLTVYDFNDKRKD---KLIGTAEFDLSSL 93
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 8 LVVEVIAAHNLMPKD-GEGSSSPFVEVEFEKQILRTQVKYKDLNPIWN-EKLVFDVPDIA 65
L V V+AA +L D + FVEV+F +T V K LNP+WN E F+V D
Sbjct: 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDD-E 59
Query: 66 ELPYKHIEVNV 76
EL + +++ V
Sbjct: 60 ELQDEPLQIRV 70
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 17/104 (16%)
Query: 1 MGDGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF-EKQILRTQVKYKDLNPIWNEKLVF 59
G + + + NL D G S PFV++ EK + +T+V K LNP+WNE+
Sbjct: 1039 SGYLT----IMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTI 1094
Query: 60 DVP----DIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQL 99
+V D+ + +NV + S + LG S+L
Sbjct: 1095 EVLNRVKDV-------LTINVN-DWDSGEKNDLLGTAEIDLSKL 1130
|
Length = 1227 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 3e-04
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 24/125 (19%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQ--VGNQFL---KTRIAAPSATRSLSNPCW 484
L V V++A+++ P D + + K G + L KT + + NP +
Sbjct: 16 LTVVVLKARNLPPSDGK----GLSDPYVKVSLLQGGKKLKKKKTSVK-----KGTLNPVF 66
Query: 485 NEDLLF-VVAEPFEDY-LLISVEDHVGPGKDEIVGKVLIPVSAVER--------RTDDKQ 534
NE F V AE E+ L+I+V D G++E++G+V++ + ++
Sbjct: 67 NEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRK 126
Query: 535 VVSRW 539
++RW
Sbjct: 127 PIARW 131
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 3e-04
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFD 659
+ + ++ A GL+ + K G+ D Y + G+ RT+T+ +L+P WNE++ +E +
Sbjct: 3 ISITVVCAQGLI----AKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHN 58
Query: 660 PCTVITVGVFDNCSLDKNIINNSGGRDSR--IGKVRIRLSTL 699
I V V+D K+ + R+S +G+ I + TL
Sbjct: 59 SSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTL 100
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Query: 624 DAYCVAKYGQKWV-RTRTVVDSLSPKWNEQYTWEVFDP-CTVITVGVFDNCSLDKNIINN 681
D YC Q V RT+TV + L+P W E++ ++ P T T+ + DK +
Sbjct: 19 DPYCTVSLDQVEVARTKTV-EKLNPFWGEEFVFDDPPPDVTFFTLSF---YNKDKRSKD- 73
Query: 682 SGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731
RD IGKV LS L+ + +PL + P G + L R+
Sbjct: 74 ---RDIVIGKV--ALSKLDLGQGKDEWFPLTPVDPDSE-VQGSVRLRARY 117
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 7e-04
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 19/116 (16%)
Query: 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-GQKWVRTRTVVDSLSPKWNEQYTWEVF 658
L + ++ A L + G D + G+K +T+T+ +L+P WNE + V
Sbjct: 1 LTVDVISAENLPSAD----RNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPV- 55
Query: 659 DPC---TVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPL 711
P V+ V V+D + GG+D +G I LS LE + + PL
Sbjct: 56 -PSRVRAVLKVEVYD---------WDRGGKDDLLGSAYIDLSDLEPEETTELTLPL 101
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 7e-04
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 8 LVVEVIAAHNLMPKD-GEGSSSPFVEVEFE---KQILRTQVKYKDLNPIWNE 55
LVV + A +L D G GSS P+V F K + T++ KDLNP+W E
Sbjct: 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEE 54
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|176073 cd08691, C2_NEDL1-like, C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 7e-04
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 37 KQILRTQVKYKDLNPIW-NEKLVFDV--PDIAELPYKHIEV-NVFNERRSSNSRNFLGKV 92
Q RT + +NP+W E+ VF D+ E IEV + F + R R FLGK+
Sbjct: 44 GQECRTSIVENTINPVWHREQFVFVGLPTDVLE-----IEVKDKFAKSRPIIRR-FLGKL 97
Query: 93 RAPCSQLCKNEGEATAQL-YTLEKRSLFSHIRGEISLK 129
P +L + +L YTL +R+ H+ G+++ +
Sbjct: 98 SIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFR 135
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 137 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 9e-04
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 853 PDELDEEFDSFPTSRGADIVRIRYDRLRSVAGRIQTVVGDMATQ 896
PD L + ++ D V L S+ +G++
Sbjct: 83 PDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 9e-04
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVP 62
L + ++ NL KD GSS P+ V+ + + I+RT +K LNP W E+ +P
Sbjct: 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLP 57
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 21 KDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80
KDG GS+ + ++ + +RT+ NP WNE+ + V D + + V VF+
Sbjct: 18 KDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTV----LTVGVFDNS 73
Query: 81 RSSNSRN-----FLGKVRAPCSQL 99
+S +GKVR S L
Sbjct: 74 QSHWKEAVQPDVLIGKVRIRLSTL 97
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEV 657
GV+ M I T L P+K G +D + + +G++ RT +L+P +NE+ +EV
Sbjct: 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEV 60
Query: 658 FD 659
+
Sbjct: 61 YP 62
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 23/140 (16%)
Query: 597 IGVLEMGILGATGLMPMKFKEGKG---GSVDAYCVAKYGQKWV-RTRTVVDSLSPKWNEQ 652
IGV+E+ I A GL K+ G+VD Y + + + +TR ++L+P WNE
Sbjct: 435 IGVVEVKIKSAEGL-----KKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNET 489
Query: 653 YTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHS-YPL 711
+ + + + ++D NS D +G ++ L+ L + V + Y
Sbjct: 490 FYILLNSFTDPLNLSLYD---------FNSFKSDKVVGSTQLDLALLHQNPVKKNELYEF 540
Query: 712 LMLHPSGVKKMGELHLAVRF 731
L K +G L +RF
Sbjct: 541 L----RNTKNVGRLTYDLRF 556
|
Length = 1227 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 13/125 (10%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKD-LNPIWNEKLVFDV-PDIA 65
LVV V+ A NL K P+ + +T+ ++ +P W+E+L F++ D
Sbjct: 3 LVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDK- 61
Query: 66 ELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGE 125
++V VF++ + +G S K Y L + + GE
Sbjct: 62 ---KPILKVAVFDDDKRKPD--LIGDTEVDLSPALKEGE--FDDWYELTLKGRY---AGE 111
Query: 126 ISLKL 130
+ L+L
Sbjct: 112 VYLEL 116
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|176045 cd08400, C2_Ras_p21A1, C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 17/110 (15%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEF-EKQILRTQVKYKDLNPIWNEKLVFD--VPDI 64
L + V+ AH L K P+ + E ++ RT+V+ + NP+W+E+ VFD PD+
Sbjct: 6 LQLNVLEAHKLPVKH---VPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDV 61
Query: 65 AELPYKHIEVNVFNE-RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTL 113
+++ N+ +RS +S + +V S+L G+ T + Y L
Sbjct: 62 NSF-----TISLSNKAKRSKDSE--IAEVTVQLSKLQN--GQETDEWYPL 102
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 126 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 25 GSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDI-AELPYKHIEVNVFNERR 81
G+ P V+VE Q T VK P +NE F+ + EL K I+++V++ R
Sbjct: 19 GNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVE-FEKQILRTQVKYK-DLNPIWNEKLVFDVPD- 63
L + +I+A +L + G + V T V NP WNE L F + +
Sbjct: 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDER 60
Query: 64 IAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQL 99
+ + + + V+ ER S + +G+VR P L
Sbjct: 61 LLQQGRLALTIEVYCERPSLGDK-LIGEVRVPLKDL 95
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDL 488
YL V V++A+ +P + + + ++GN T+ A SNP WN+
Sbjct: 1 YLYVRVVKARG-LPANSN-------DPVVEVKLGNYKGSTK-----AIERTSNPEWNQVF 47
Query: 489 LFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTD-DKQVVSRWFNLENHFG 547
F L +SV D KD+ +G V +S V R D + +W+ LE+ G
Sbjct: 48 AFSKDRLQGSTLEVSVWDK-DKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG 106
Query: 548 N 548
Sbjct: 107 G 107
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 27/116 (23%)
Query: 600 LEMGILGATGLMPMKFKEGKGGSVDAYC------VAKYGQKWVRTRTVVDSLSPKWNEQY 653
L I+ A GL M G D Y A +RT+TV + +P++NE
Sbjct: 17 LHCTIIRAKGLKAM----DANGLSDPYVKLNLLPGASK-ATKLRTKTVHKTRNPEFNETL 71
Query: 654 TWEVFDPCTVIT-----VGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRV 704
T+ I + V D + +G+ RI L L+ ++
Sbjct: 72 TYYGIT-EEDIQRKTLRLLVLDEDRF----------GNDFLGETRIPLKKLKPNQT 116
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.002
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 13/113 (11%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLL 489
LR V+EA+D+ P D+ F + Q L+T + S P WNE
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPF----VRVFYNGQTLETSVVKKSCY-----PRWNEVFE 52
Query: 490 FVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNL 542
F + E + L + V D K++ +GKV+ + +++ + WF L
Sbjct: 53 FELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQ----AKQEEGWFRL 101
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.002
Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYC-VAKYGQKWVRTRTVVDSLSPKWNEQYTWE 656
GVL + I A L K EG G +D Y V G RT T+ ++L+P W+E
Sbjct: 1 GVLRLHIRKANDL---KNLEG-VGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVP 56
Query: 657 VFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLS 697
V P IT+ V D +K G+D +G V I +S
Sbjct: 57 VTSPNQKITLEVMD---YEKV------GKDRSLGSVEINVS 88
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLL 489
L V ++E +D+ P + + E+ +G+Q KT++ + + NP WN +
Sbjct: 17 LMVVIVEGRDLKPCNSNGKSDPYCEV----SMGSQEHKTKVVSDT-----LNPKWNSSMQ 67
Query: 490 FVVAEPFEDYLLISV--EDHVGPGKDEIVGKVLIPVSAVERRTDD 532
F V + +D L I+V D P D+ +G+ I V+ + + T +
Sbjct: 68 FFVKDLEQDVLCITVFDRDFFSP--DDFLGRTEIRVADILKETKE 110
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 19/118 (16%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLL 489
+ + ++E +++ P D + + K ++GN+ K+++ + + NP W E
Sbjct: 2 VTIVLVEGKNLPPMDDN----GLSDPYVKFRLGNEKYKSKVCSKTL-----NPQWLEQFD 52
Query: 490 FVVAEPFEDY---LLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLEN 544
+ F+D L I V D KDE +G+ I +SA+ R +Q S LE+
Sbjct: 53 LHL---FDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPR----EQTHSLELELED 103
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.003
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 12 VIAAHNLMPKDGEGSSSPFVEVEFEKQIL-RTQVKYKDLNPIWNEKLVFDVPDIAELPYK 70
+ A++L +G G P+V V + RT LNP+W+E V VP + P +
Sbjct: 7 IRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDE--VLYVP-VTS-PNQ 62
Query: 71 HIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSL 118
I + V + + R LG V S L K + Y E+ L
Sbjct: 63 KITLEVMDYEKVGKDR-SLGSVEINVSDLIKKNEDGKYVEYDDEEERL 109
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 8 LVVEVIAAHNLMPKD-GEGSSSPFVEV----EFEKQILR-TQVKYKDLNPIWNEKLVFDV 61
L V + NL D + S+P+V+V + KQ R T VK NP++NE L + +
Sbjct: 16 LEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHI 75
Query: 62 PDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAP 95
++L + ++++V++ R FLG+V P
Sbjct: 76 S-KSQLETRTLQLSVWHHDRFGR-NTFLGEVEIP 107
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILR-TQVKYKDLNPIWNEKLVFDVPD 63
K +L + V +A L P+VEV + Q + T+V K NP WNE V
Sbjct: 1 KSQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT- 58
Query: 64 IAELPYKHIEVNVFN 78
P +E V++
Sbjct: 59 ----PQSTLEFKVWS 69
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.004
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 32/133 (24%)
Query: 274 LYVRVVKARDISLFGGG--EIVAEVKLGN-YRGITKRVS----SNHLQWDQVFAF----- 321
L VRV++ RD++L G + A V L + TKR +N+ ++D+ F F
Sbjct: 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIG 60
Query: 322 -SKDCIQS-------SAAEIFVKESD-----KDDFLGRIWFDLNEVPRRVPPDSQLAPQW 368
S + +E+ V+ DDFLG + L + + + W
Sbjct: 61 FSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQA-----W 115
Query: 369 YRME--DRRGDRS 379
Y ++ + G RS
Sbjct: 116 YFLQPREAPGTRS 128
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.004
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 314 QWDQVFAFSKDCIQSSAAEIFVKESD---KDDFLGRIWFDLNEVPRRVPPDSQLAPQWYR 370
+W++VF F S + V + D K+DFLG++ F + + + + W+R
Sbjct: 46 RWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEG-----WFR 100
Query: 371 ME-DRRGDRSKGG 382
+ D R + GG
Sbjct: 101 LLPDPRAEEESGG 113
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 971 | |||
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 100.0 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 100.0 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.97 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.93 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.92 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.89 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.88 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.88 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.87 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.85 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.85 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.84 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.83 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.83 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.82 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.81 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.8 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.79 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.79 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.79 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.79 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.78 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.78 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.77 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.77 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.77 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.76 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.76 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.76 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.76 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.76 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.76 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.75 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.75 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.75 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.75 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.75 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.74 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.74 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.74 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.74 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.73 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.73 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.73 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.73 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.72 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.72 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.72 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.72 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.72 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.72 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.71 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.71 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.71 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.71 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.71 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.71 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.71 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.71 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.7 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.7 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.7 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.69 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.69 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.69 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.69 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.69 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.69 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.68 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.68 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.68 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.68 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.68 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.68 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.68 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.67 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.67 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.67 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.67 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.67 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.67 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.66 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.66 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.66 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.66 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.66 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.66 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.66 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.66 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.66 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.66 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.65 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.65 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.65 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.65 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.65 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.65 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.65 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.64 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.64 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.64 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.64 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.64 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.63 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.63 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.63 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.63 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.62 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.62 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.62 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.62 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.62 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.61 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.61 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.61 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.61 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.61 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.61 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.6 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.6 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.6 | |
| PLN03008 | 868 | Phospholipase D delta | 99.6 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.6 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.6 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.6 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.59 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.59 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.59 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.59 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.59 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.59 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.59 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.59 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.59 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.59 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.59 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.58 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.58 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.58 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.58 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.57 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.57 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.57 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.56 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.56 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.56 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.56 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.56 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.55 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.55 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.55 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.53 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.53 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.53 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.53 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.53 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.52 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.52 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.52 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.52 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.52 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.51 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.51 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.51 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.51 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.51 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.51 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.5 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.5 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.5 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.49 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.49 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.49 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.49 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.49 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.48 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.48 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.47 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.47 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.46 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.46 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.46 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.45 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.45 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.45 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.44 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.44 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.44 | |
| PLN03008 | 868 | Phospholipase D delta | 99.44 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.43 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.43 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.43 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.41 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.41 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.4 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.38 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 99.37 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.35 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.34 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.33 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.33 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.3 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.22 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.2 | |
| PLN02270 | 808 | phospholipase D alpha | 99.19 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.14 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 99.12 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.11 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.09 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.08 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.08 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.02 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.01 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 98.99 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.96 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.91 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.9 | |
| PLN02270 | 808 | phospholipase D alpha | 98.87 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.86 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.84 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.82 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.81 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.8 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.76 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.76 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.75 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.73 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.72 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.69 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.68 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.65 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.5 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.41 | |
| PF04842 | 683 | DUF639: Plant protein of unknown function (DUF639) | 98.4 | |
| PF06398 | 359 | Pex24p: Integral peroxisomal membrane peroxin; Int | 98.34 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.27 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 98.26 | |
| PF11696 | 642 | DUF3292: Protein of unknown function (DUF3292); In | 98.16 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.05 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 98.02 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.01 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 97.78 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.75 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 97.68 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.46 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.41 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.24 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.13 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 96.97 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 96.8 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 96.66 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 96.5 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 96.04 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.46 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.3 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 94.78 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 94.61 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 94.42 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 94.08 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 94.07 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 93.65 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 93.4 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 93.14 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 93.08 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 92.35 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 92.29 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 91.84 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 91.61 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 91.44 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 89.97 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 89.54 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 89.23 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 87.72 | |
| PF02453 | 169 | Reticulon: Reticulon; InterPro: IPR003388 Eukaryot | 86.75 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 85.02 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 83.3 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 82.23 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 82.13 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 81.93 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 81.5 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 81.12 |
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=386.09 Aligned_cols=156 Identities=67% Similarity=1.204 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCCCCCcCCccCCCCCCCCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046822 816 IPAILLYLSLLGLWRYRSRSRHPPHMDIRLSQADSVFPDELDEEFDSFPTSRGADIVRIRYDRLRSVAGRIQTVVGDMAT 895 (971)
Q Consensus 816 ~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dee~d~~~~~~~~~~~~~r~~~~~~~~~~vQ~~~~~~a~ 895 (971)
+|+++|++|++++|||++||++|+|||.++|++|++++||+|||+|++|++++++++++|||+||+++++|||++|++|+
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At 80 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVAT 80 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccChhhHHHHHHHHHHHHhhhhhhhhhhhhhheeeccccCCcccCCCCChhhhhhhcCCCCccCCC
Q 046822 896 QGERFQALISWRDPRATFLFVIFCLFAAIGFYAVPVRVVFALSGVYVLRPPRFRSKLPSPALSFFRRLPSKADTLL 971 (971)
Q Consensus 896 ~~Er~~~l~~W~~p~~t~~~~~~~~~~~~~~~~vp~r~i~l~~g~~~~r~p~~~~~~~~~~~~~~~r~p~~~~~~~ 971 (971)
+|||++|+|||+||++|++|+++|+++++++|++|+||++++||+|++|||+||.++|++++|||+||||++|+||
T Consensus 81 ~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs~~d~~l 156 (156)
T PF08372_consen 81 QGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPSRSDSML 156 (156)
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCCchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=336.53 Aligned_cols=552 Identities=22% Similarity=0.290 Sum_probs=385.6
Q ss_pred CCCCeEEEEEEEEeeCCCCCC--CCCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 2 GDGKEKLVVEVIAAHNLMPKD--GEGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 2 ~~~~~~L~V~V~~a~~L~~~d--~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
|..-|+|.|+|.+|++|...+ .++..|||+.+.+.+. ..+|+++++++||+|||+|+..+.... +.|.++|||
T Consensus 432 ~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~----d~L~LslyD 507 (1227)
T COG5038 432 GTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFT----DPLNLSLYD 507 (1227)
T ss_pred CCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccC----CceeEEEEe
Confidence 345689999999999999888 5889999999998754 579999999999999999999998766 799999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeecccccccCCCCCCCCCCccccccc
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTTEEVVKKGGFVSSLTPSSAFSKKN 158 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~e~~~~~~~~~k~~ 158 (971)
.+.+. +|+.+|++.++|..+........ +-+.+.. ..+..|.|...+.|.+...... ..
T Consensus 508 ~n~~~-sd~vvG~~~l~L~~L~~~~~~~n-e~~e~~~---~~k~vGrL~yDl~ffp~~e~k~----------------~~ 566 (1227)
T COG5038 508 FNSFK-SDKVVGSTQLDLALLHQNPVKKN-ELYEFLR---NTKNVGRLTYDLRFFPVIEDKK----------------EL 566 (1227)
T ss_pred ccccC-CcceeeeEEechHHhhhcccccc-ceeeeec---cCccceEEEEeeeeecccCCcc----------------cc
Confidence 88765 89999999999999975443222 2233322 2356799999999986553100 00
Q ss_pred cccccCCCcccccccccCCCCCCCCCccccCccCcCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCCCCccCC
Q 046822 159 KKLQQQSPVMQVQQQHFGHQDMMSKPTHQQQSQNHVKPMEPNPGELKPVVITTAPRPVIPGARGGPTFGGGGGGGVYVNG 238 (971)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 238 (971)
. +. . +| .|
T Consensus 567 ~----------------~s----~-----------------------------e~---~e-------------------- 574 (1227)
T COG5038 567 K----------------GS----V-----------------------------EP---LE-------------------- 574 (1227)
T ss_pred c----------------cc----c-----------------------------CC---cc--------------------
Confidence 0 00 0 00 00
Q ss_pred CCCcccccCCCCCCCCCCcccccccccccccceeEEEEEEEEeecCC-CCCCC-CeEEEEEECC-eeeeeeeecCC-CCc
Q 046822 239 SGEFSLKETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDIS-LFGGG-EIVAEVKLGN-YRGITKRVSSN-HLQ 314 (971)
Q Consensus 239 ~~~~~~~~~~p~~~~~~~~~~~~~~~~d~v~~~~~L~V~v~~a~~L~-~~~~~-dpyV~v~~~~-~~~kT~~~~~~-nP~ 314 (971)
+.. .+.+.+++.++++|. ..++- .-++++.+.. ..+.|+.++.+ +|.
T Consensus 575 -----------d~n------------------~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~ 625 (1227)
T COG5038 575 -----------DSN------------------TGILKVTLREVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPS 625 (1227)
T ss_pred -----------cCC------------------cceeEEEeeccccccCccccccceeEEEEecceEEeccceeeeccCCc
Confidence 000 177899999999998 22322 3338888886 56677999999 999
Q ss_pred cccEEEEeccCCCcceEEEEEecCCCCcccEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCccccEEEEEEEEEeccc
Q 046822 315 WDQVFAFSKDCIQSSAAEIFVKESDKDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGTQA 394 (971)
Q Consensus 315 wne~f~f~~~~~~~~~l~v~v~D~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 394 (971)
||+.+...+.+-....+.+.+.|....+.+|+...+|.++..+... .-.||++..+ .|+|.++.+
T Consensus 626 wn~~~~~~v~~~~ns~~~~~~~d~~~g~~i~~~~~~l~~li~~t~d----t~~~f~~~~~------kg~I~~t~~----- 690 (1227)
T COG5038 626 WNLQYNVLVTDRKNSSIKVVTFDVQSGKVIATEGSTLPDLIDRTLD----TFLVFPLRNP------KGRIFITNY----- 690 (1227)
T ss_pred eeeecceEeccCcceeEEEEecccccCceeccccccchHhhhcccc----ceEEEEcCCC------cceEEEEec-----
Confidence 9999999999887788999999965677888888888888765431 2389998854 378888773
Q ss_pred chHHHHHhhccccccCCCCccccccccccCCceEEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECC-eEEEeeecCC
Q 046822 395 DEAFAEAWHSKAANVHFDGLCSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGN-QFLKTRIAAP 473 (971)
Q Consensus 395 d~~~~~~~~~~~~~~~~~~~~~~~~k~~~~p~l~~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~-~~~rT~~~~~ 473 (971)
|.+-.. .....++.+.....+.++|.|..|.+|...... +++|||+++.+++ .++||-..
T Consensus 691 -------W~Pi~~------~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g----~~~dPya~v~~n~~~k~rti~~-- 751 (1227)
T COG5038 691 -------WKPIYN------AGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPG----GKSDPYATVLVNNLVKYRTIYG-- 751 (1227)
T ss_pred -------cceeec------cccccceeeecCccceEEEEeehhhcccccccC----cccccceEEEecceeEEEEecc--
Confidence 321110 011123333455677899999999999866665 8999999999976 78888877
Q ss_pred CCCCCCCCCcccceeEEEeecCCCCeEEEEEEeCcCCCCCceeEEEEEecccccccccccc----------cc-------
Q 046822 474 SATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQ----------VV------- 536 (971)
Q Consensus 474 ~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~----------~~------- 536 (971)
..+.||.|++.....+..+.. .|.++++|....+.|..+|++.++++++..+.++.. +.
T Consensus 752 ---~~~~npiw~~i~Yv~v~sk~~-r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~ 827 (1227)
T COG5038 752 ---SSTLNPIWNEILYVPVTSKNQ-RLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGK 827 (1227)
T ss_pred ---cCccccceeeeEEEEecCCcc-EEeeeeecchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccC
Confidence 899999999999998888765 699999999888899999999999999876321110 00
Q ss_pred ---------ceeEEcccCCC-----------CCC---C-----cce---------------------ee-----------
Q 046822 537 ---------SRWFNLENHFG-----------NQG---E-----SKV---------------------VT----------- 556 (971)
Q Consensus 537 ---------~~w~~L~~~~~-----------~~~---~-----~~~---------------------~~----------- 556 (971)
.+.|+...... ++. + +.. ..
T Consensus 828 ~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~ln 907 (1227)
T COG5038 828 KVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLN 907 (1227)
T ss_pred CcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhh
Confidence 01111100000 000 0 000 00
Q ss_pred ---ee-ee--------------eeEEEEEccCccc-ccCccc--------ccc-----------------CC------C-
Q 046822 557 ---RF-GS--------------RIHLRVSLDGGYH-VLDEAT--------LYS-----------------SD------V- 585 (971)
Q Consensus 557 ---~~-~g--------------~i~l~l~l~~~~~-~~~~~~--------~~~-----------------sd------~- 585 (971)
.| +| .+.+++.++...| .+-.+. ... .+ -
T Consensus 908 e~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~ 987 (1227)
T COG5038 908 EALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKV 987 (1227)
T ss_pred hhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCce
Confidence 00 01 1222222332111 000000 000 00 0
Q ss_pred -----------------ccc-------------------ccccC----CCceeEEEEEEEeeeCCCCCCccCCCCcccCc
Q 046822 586 -----------------KPT-------------------AKQLW----KPHIGVLEMGILGATGLMPMKFKEGKGGSVDA 625 (971)
Q Consensus 586 -----------------~~~-------------------~~~~~----~~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dp 625 (971)
+|. ..++. ..+.|.|.+.+.+|.||+..+. +|.+ ||
T Consensus 988 v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~---ng~s-Dp 1063 (1227)
T COG5038 988 VCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDE---NGYS-DP 1063 (1227)
T ss_pred eeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCCCccccc---CCCC-Cc
Confidence 000 00000 1357999999999999998765 8999 99
Q ss_pred EEEEEECCE-EEeeecccCCCCCeecceeEEEeeC-CCcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCc
Q 046822 626 YCVAKYGQK-WVRTRTVVDSLSPKWNEQYTWEVFD-PCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDR 703 (971)
Q Consensus 626 y~~~~~g~~-~~rT~~~~~~~nP~Wne~~~~~v~~-~~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~ 703 (971)
||++.++++ .++|+++++++||.|||.+.++|.. ....++|.|+|||. +.+++.||.+.|+|+.|+.+.
T Consensus 1064 fv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~---------~~knd~lg~~~idL~~l~~~~ 1134 (1227)
T COG5038 1064 FVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDS---------GEKNDLLGTAEIDLSKLEPGG 1134 (1227)
T ss_pred eEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeeccc---------CCCccccccccccHhhcCcCC
Confidence 999999766 7999999999999999999999984 56699999999994 359999999999999999888
Q ss_pred eEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 704 VYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 704 ~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
.+....+|..+. .+ ...|.++....|.
T Consensus 1135 ~~n~~i~ldgk~-~~-~~~g~~~~~~~~r 1161 (1227)
T COG5038 1135 TTNSNIPLDGKT-FI-VLDGTLHPGFNFR 1161 (1227)
T ss_pred ccceeeeccCcc-eE-ecccEeecceecc
Confidence 777777776433 11 2357777777665
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=291.61 Aligned_cols=635 Identities=16% Similarity=0.170 Sum_probs=377.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCC----CCCC--CcceEEEEEEeCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPD----IAEL--PYKHIEVNVFNER 80 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~----~~~l--~~~~L~i~V~d~~ 80 (971)
.++++|.+|++|.+.|..+.+|||+.+.+.++.+.|.++.+|+||.||++..|.-.. +..+ .-..+.++|||.+
T Consensus 207 ~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~d 286 (1105)
T KOG1326|consen 207 PLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLD 286 (1105)
T ss_pred hhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhh
Confidence 467888899999999999999999999999999999999999999999999987211 1111 1247789999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeecccccccCCCCCCCCCCccccccccc
Q 046822 81 RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTTEEVVKKGGFVSSLTPSSAFSKKNKK 160 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~e~~~~~~~~~k~~~~ 160 (971)
+.+ .++|+|+......-... .....|+++..++ ...|++.++..++..+.+ .
T Consensus 287 r~g-~~ef~gr~~~~p~V~~~---~p~lkw~p~~rg~---~l~gd~l~a~eliq~~~~---i------------------ 338 (1105)
T KOG1326|consen 287 RSG-INEFKGRKKQRPYVMVQ---CPALKWVPTMRGA---FLDGDVLIAAELIQIGKP---I------------------ 338 (1105)
T ss_pred hhc-hHHhhcccccceEEEec---CCccceEEeeccc---ccccchhHHHHHHhhcCC---C------------------
Confidence 987 89999998886555443 2234789987543 234555544333221110 0
Q ss_pred cccCCCcccccccccCCCCCCCCCccccCccCcCCCCCCCCCCCCCcccCCCCCCCCCCCCC-CCCcCCCCCCCCccCCC
Q 046822 161 LQQQSPVMQVQQQHFGHQDMMSKPTHQQQSQNHVKPMEPNPGELKPVVITTAPRPVIPGARG-GPTFGGGGGGGVYVNGS 239 (971)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~ 239 (971)
+.|..+. ...+..
T Consensus 339 -------------------------------------------------------~~p~~~~~~~~~~v----------- 352 (1105)
T KOG1326|consen 339 -------------------------------------------------------PQPPPQREIIFSLV----------- 352 (1105)
T ss_pred -------------------------------------------------------CCCCcccccceecc-----------
Confidence 0000000 000000
Q ss_pred CCcccccCCCCCCCCCCcccccccccccccceeEEEEEEEEeecCC---CCCCCCeEEEEEECCeeeeeeeecCC--CCc
Q 046822 240 GEFSLKETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDIS---LFGGGEIVAEVKLGNYRGITKRVSSN--HLQ 314 (971)
Q Consensus 240 ~~~~~~~~~p~~~~~~~~~~~~~~~~d~v~~~~~L~V~v~~a~~L~---~~~~~dpyV~v~~~~~~~kT~~~~~~--nP~ 314 (971)
...++|.+.. +.+.|-..--+|+. ......|-+.+.+|++..++..|.+- ||.
T Consensus 353 ----p~~iRp~~q~------------------~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npn 410 (1105)
T KOG1326|consen 353 ----PKKIRPKTQI------------------GKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPN 410 (1105)
T ss_pred ----ccCCCcceee------------------eeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCC
Confidence 0112222211 22233222334443 34567899999999999999998875 999
Q ss_pred cccEEEEeccC-----CCcceEEEEEecC---CCCcccEEEEEE-ccccCCCCCCCCCCCCe------------------
Q 046822 315 WDQVFAFSKDC-----IQSSAAEIFVKES---DKDDFLGRIWFD-LNEVPRRVPPDSQLAPQ------------------ 367 (971)
Q Consensus 315 wne~f~f~~~~-----~~~~~l~v~v~D~---~~d~~lG~~~i~-l~~l~~~~~~~~~~~~~------------------ 367 (971)
++..|.+-... .....+.+.|.|. +.-..+|.|.+. +.....+........||
T Consensus 411 f~s~~~~~~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~ 490 (1105)
T KOG1326|consen 411 FPSRVLGRLVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIR 490 (1105)
T ss_pred CceeEEEEEEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhh
Confidence 99777654332 2345778888876 788999999875 33333222111111111
Q ss_pred -----EEE-----------------eecCCCCc------cccEEEEEEEEEecccch---HHH--HHhhccc-------c
Q 046822 368 -----WYR-----------------MEDRRGDR------SKGGEVMVSIWFGTQADE---AFA--EAWHSKA-------A 407 (971)
Q Consensus 368 -----w~~-----------------L~~~~~~~------~~~G~i~l~~~~~~~~d~---~~~--~~~~~~~-------~ 407 (971)
|+. +....+.. ..++...|.++ +...| .|. +.|...- .
T Consensus 491 ~~~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiy--n~ele~v~ef~~l~D~~~~f~l~rG~~~ 568 (1105)
T KOG1326|consen 491 HCNSSTLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIY--NMELEMVAEFRGLQDWAVTFKLYRGKEG 568 (1105)
T ss_pred hccccCCCCCccccccceehhhhhhccccccccccccccccccceEEEEe--hhhhhhHHHHhhhhhccceeEeeecccc
Confidence 111 11100000 01112222221 11111 111 1121100 0
Q ss_pred ccCCC-------------------Cccccccc---cc--cCCceEEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECC
Q 046822 408 NVHFD-------------------GLCSLKSK---VY--LSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGN 463 (971)
Q Consensus 408 ~~~~~-------------------~~~~~~~k---~~--~~p~l~~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~ 463 (971)
.+..+ ......+. .+ ..|....+||.|++|.+|.+.|.+ |.+||||++.+|+
T Consensus 569 ~e~~e~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~D~n----g~adpYv~l~lGk 644 (1105)
T KOG1326|consen 569 LECLEQQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPSDGN----GDADPYVKLLLGK 644 (1105)
T ss_pred CCCcccchhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeeccccCCC----CCcCceeeeeecc
Confidence 00000 00000000 00 135566899999999999999999 9999999999999
Q ss_pred eEEEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEEEEeCcCCCCCceeEEEEEeccc-cccccccccccceeEEc
Q 046822 464 QFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSA-VERRTDDKQVVSRWFNL 542 (971)
Q Consensus 464 ~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d~d~~~~d~~iG~~~i~L~~-l~~~~~~~~~~~~w~~L 542 (971)
+....+..+. .+++||+|++.|++.+..|.+..|+++|||+|..+.|+.||+..|+|++ .....+.++...+-|..
T Consensus 645 ~~~~d~~~yi---p~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v 721 (1105)
T KOG1326|consen 645 KRTLDRAHYI---PNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLENRWLTRHRARCGLAQTYCV 721 (1105)
T ss_pred chhhhhhhcC---cCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhhcccCcCCcccCccceeee
Confidence 8755554432 8999999999999999999999999999999999999999999999986 44444555555555665
Q ss_pred ccCCCCCCCcce-------------ee-eeeeeeEEEEEccCcccccC--------------------------------
Q 046822 543 ENHFGNQGESKV-------------VT-RFGSRIHLRVSLDGGYHVLD-------------------------------- 576 (971)
Q Consensus 543 ~~~~~~~~~~~~-------------~~-~~~g~i~l~l~l~~~~~~~~-------------------------------- 576 (971)
.+...+.+.... .. -+.+.. ..+.+.|.....|
T Consensus 722 ~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpe 800 (1105)
T KOG1326|consen 722 SGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDIYDEKEAKTIEVPHLGNAWERLALWILMNQGLVPE 800 (1105)
T ss_pred eccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhhhcccccCCCCCcccchHHHHHHHHhhhhcCcCCc
Confidence 555543322110 00 001111 1111111100000
Q ss_pred --ccccccCCCccccc----ccC------------------CCceeEEEEEEEeeeCCCCCCccCCCC--cccCcEEEEE
Q 046822 577 --EATLYSSDVKPTAK----QLW------------------KPHIGVLEMGILGATGLMPMKFKEGKG--GSVDAYCVAK 630 (971)
Q Consensus 577 --~~~~~~sd~~~~~~----~~~------------------~~~~g~L~v~v~~a~~L~~~~~~~~~g--~s~dpy~~~~ 630 (971)
+.....++..|-.+ ++| ++..-.|+|.|..-.+...-+. ++.| .| |.||.-.
T Consensus 801 hvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~lrviiWnt~~v~l~dd-~~~ge~~s-dIyv~gw 878 (1105)
T KOG1326|consen 801 HVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYELRVIIWNTDKVRLNDD-EITGEKMS-DIYVKGW 878 (1105)
T ss_pred ccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhheeEEEEEeeccceeecCc-cceeeecc-ceEEecc
Confidence 00000111111111 122 1345678888887777665432 2333 45 9999999
Q ss_pred E-C--CEEEeeecccCCC----CCeecceeEEEe----------------------eCCCcEEEEEEEeCCCCCccccCC
Q 046822 631 Y-G--QKWVRTRTVVDSL----SPKWNEQYTWEV----------------------FDPCTVITVGVFDNCSLDKNIINN 681 (971)
Q Consensus 631 ~-g--~~~~rT~~~~~~~----nP~Wne~~~~~v----------------------~~~~~~l~i~V~D~~~~~~~~~~~ 681 (971)
+ | ..+++|.+.++++ |-.|.-.|.|+- +..-..|.|+|||+|.|+
T Consensus 879 ~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~ws~dete~k~p~rl~iqiWD~d~fs------ 952 (1105)
T KOG1326|consen 879 VLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYSWSLDETEFKIPARLIIQIWDNDKFS------ 952 (1105)
T ss_pred cccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhccccccccccCchheEEEecccCccC------
Confidence 7 3 3457888887765 667765555421 011126999999999997
Q ss_pred CCCCCceeEEEEEEcccccCC----------------------ceEeeeEeceecCCCCcccceEEEEEEEEeecchhHH
Q 046822 682 SGGRDSRIGKVRIRLSTLESD----------------------RVYTHSYPLLMLHPSGVKKMGELHLAVRFSCANLVNM 739 (971)
Q Consensus 682 ~~~~d~~iG~~~i~l~~l~~~----------------------~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~~~~~ 739 (971)
+|++||..+++|+++..+ +....|||+........--+|.+++++..- ..
T Consensus 953 ---~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a~~~~~~~l~Gkvem~leil-----t~ 1024 (1105)
T KOG1326|consen 953 ---KDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQAEEGDAKVLAGKVEMSLEIL-----TE 1024 (1105)
T ss_pred ---hhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeeecCCCcceecceeeeehhhh-----hh
Confidence 999999999999986432 445789999976432222378888887532 11
Q ss_pred HHhhcCCCCCCCcccCCCchhhHHHHHHHHHHHHHHhhccc-----CCCcccccccccCCchhHHHHHHHHHHHHHc
Q 046822 740 LHMYAMPLLPKMHYVHPLSVHQLETLRYQALNVVSSWLNRA-----EPPLGRESMRNWHKPIYSTLSLAFFFLLVLM 811 (971)
Q Consensus 740 ~~~~~~p~~p~~~y~~p~~~~~~~~l~~~~~~~~~~~~~~~-----~ppl~~~s~~~W~~p~~s~~~~~~~~~~~~~ 811 (971)
.|...+ ....+|+ |||.|+++.|.|-..+...+.|++|-.+-|+
T Consensus 1025 ----------------------~EA~~~------PAG~gr~ePn~Le~P~Rpdtsf~wl~sp~K~~~~i~W~~yr~~ 1073 (1105)
T KOG1326|consen 1025 ----------------------KEADER------PAGKGRDEPNKLEPPNRPDTSFLWLTSPCKSFKFILWHRYRWY 1073 (1105)
T ss_pred ----------------------hhhhhC------ccccCCCCCCcCCCCCCCCccchhhcccccchhhhhHHHHHHH
Confidence 111111 1223444 5799999999999666666777877766665
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-25 Score=247.00 Aligned_cols=211 Identities=28% Similarity=0.395 Sum_probs=176.7
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC---eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK---QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
....|.|+|++|++|+++|..|.+||||++.+.. .+.+|+++++|+||.|||+|.|.+.. +++....|.+.|||+|
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~-~~l~~~~L~l~V~~~d 243 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPY-EELSNRVLHLSVYDFD 243 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCH-HHhccCEEEEEEEecC
Confidence 4567999999999999999778899999999984 47899999999999999999999763 4677899999999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCC-eeeeEEEEEEEeeecccccccCCCCCCCCCCcccccccc
Q 046822 81 RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFS-HIRGEISLKLFVSTTEEVVKKGGFVSSLTPSSAFSKKNK 159 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~~~~~~~~~~~~~~e~~~~~~~~~k~~~ 159 (971)
+|+ ++++||++.++|..+..... ...|.+|....... ...|+|.+.+.|.+.
T Consensus 244 rfs-r~~~iGev~~~l~~~~~~~~--~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~------------------------ 296 (421)
T KOG1028|consen 244 RFS-RHDFIGEVILPLGEVDLLST--TLFWKDLQPSSTDSEELAGELLLSLCYLPT------------------------ 296 (421)
T ss_pred Ccc-cccEEEEEEecCcccccccc--ceeeeccccccCCcccccceEEEEEEeecC------------------------
Confidence 998 89999999999999865433 45799998863322 222799888887421
Q ss_pred ccccCCCcccccccccCCCCCCCCCccccCccCcCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCCCCccCCC
Q 046822 160 KLQQQSPVMQVQQQHFGHQDMMSKPTHQQQSQNHVKPMEPNPGELKPVVITTAPRPVIPGARGGPTFGGGGGGGVYVNGS 239 (971)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 239 (971)
T Consensus 297 -------------------------------------------------------------------------------- 296 (421)
T KOG1028|consen 297 -------------------------------------------------------------------------------- 296 (421)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccCCCCCCCCCCcccccccccccccceeEEEEEEEEeecCC---CCCCCCeEEEEEECC-----eeeeeeeecCC
Q 046822 240 GEFSLKETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDIS---LFGGGEIVAEVKLGN-----YRGITKRVSSN 311 (971)
Q Consensus 240 ~~~~~~~~~p~~~~~~~~~~~~~~~~d~v~~~~~L~V~v~~a~~L~---~~~~~dpyV~v~~~~-----~~~kT~~~~~~ 311 (971)
.+.|.|.|++|++|. .++.+||||++.+-. .+.+|.+.+++
T Consensus 297 -------------------------------~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~ 345 (421)
T KOG1028|consen 297 -------------------------------AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKT 345 (421)
T ss_pred -------------------------------CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCC
Confidence 066899999999999 678899999999862 57788999999
Q ss_pred -CCccccEEEEecc--CCCcceEEEEEecC---CCCcccEEEEEEccc
Q 046822 312 -HLQWDQVFAFSKD--CIQSSAAEIFVKES---DKDDFLGRIWFDLNE 353 (971)
Q Consensus 312 -nP~wne~f~f~~~--~~~~~~l~v~v~D~---~~d~~lG~~~i~l~~ 353 (971)
||+|||+|.|.+. .++...|.|.|||. +.+++||.|.+....
T Consensus 346 ~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 346 LNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred CCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 9999999999887 45566788888887 788899999987664
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-23 Score=239.80 Aligned_cols=389 Identities=16% Similarity=0.194 Sum_probs=284.3
Q ss_pred ceeEEEEEEEEeecCC-----CCCCCCeEEEEEECC-eeeeeeeecCC-CCccccEEEEeccCCCcceEEEEEecC---C
Q 046822 270 QMQYLYVRVVKARDIS-----LFGGGEIVAEVKLGN-YRGITKRVSSN-HLQWDQVFAFSKDCIQSSAAEIFVKES---D 339 (971)
Q Consensus 270 ~~~~L~V~v~~a~~L~-----~~~~~dpyV~v~~~~-~~~kT~~~~~~-nP~wne~f~f~~~~~~~~~l~v~v~D~---~ 339 (971)
..+.|.|+|.+|++|. ..+..|||+.+.+.+ ...+|++.+++ ||+|||+|...+.... +.|.+.+||. .
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~-d~L~LslyD~n~~~ 512 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFT-DPLNLSLYDFNSFK 512 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccC-CceeEEEEeccccC
Confidence 3489999999999998 478999999999875 56799999999 9999999999998664 7899999995 7
Q ss_pred CCcccEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCccccEEEEEEEEEecccchHHHHHhhccccccCCCCcccccc
Q 046822 340 KDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGTQADEAFAEAWHSKAANVHFDGLCSLKS 419 (971)
Q Consensus 340 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 419 (971)
+|+.+|++.++|..+..+...... -|.+.. .....|+|...+.+-...+... ......++.
T Consensus 513 sd~vvG~~~l~L~~L~~~~~~~ne----~~e~~~---~~k~vGrL~yDl~ffp~~e~k~-------~~~~s~e~~----- 573 (1227)
T COG5038 513 SDKVVGSTQLDLALLHQNPVKKNE----LYEFLR---NTKNVGRLTYDLRFFPVIEDKK-------ELKGSVEPL----- 573 (1227)
T ss_pred CcceeeeEEechHHhhhccccccc----eeeeec---cCccceEEEEeeeeecccCCcc-------ccccccCCc-----
Confidence 999999999999998875443322 222221 1225699999884432111100 000000011
Q ss_pred ccccCCceEEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECC-eEEEeeecCCCCCCCCCCCcccceeEEEeecCCCC
Q 046822 420 KVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGN-QFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFED 498 (971)
Q Consensus 420 k~~~~p~l~~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~-~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~ 498 (971)
.....+++.+++.++++|...... ....++++++.. .++-|+.. +.+.+|.||+++...+.+-...
T Consensus 574 ---ed~n~GI~k~tl~~~~~l~~~~~~-----~~~~~a~l~~~~keV~st~~~-----k~t~~~~wn~~~~~~v~~~~ns 640 (1227)
T COG5038 574 ---EDSNTGILKVTLREVKALDELSSK-----KDNKSAELYTNAKEVYSTGKL-----KFTNHPSWNLQYNVLVTDRKNS 640 (1227)
T ss_pred ---ccCCcceeEEEeeccccccCcccc-----ccceeEEEEecceEEecccee-----eeccCCceeeecceEeccCcce
Confidence 112356899999999999654332 333448888865 56666888 8999999999999999887777
Q ss_pred eEEEEEEeCcCCCCCceeEEEEEeccccccccccccccceeEEcccCCCCCCCcceeeeeeeeeEEEEEccCcccccCcc
Q 046822 499 YLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEA 578 (971)
Q Consensus 499 ~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~g~i~l~l~l~~~~~~~~~~ 578 (971)
.+.+.+.|.. ..+.||....+|.++..+. .....||++..++ |+|.+..++.+.+...+-+
T Consensus 641 ~~~~~~~d~~---~g~~i~~~~~~l~~li~~t---~dt~~~f~~~~~k-------------g~I~~t~~W~Pi~~~~~~~ 701 (1227)
T COG5038 641 SIKVVTFDVQ---SGKVIATEGSTLPDLIDRT---LDTFLVFPLRNPK-------------GRIFITNYWKPIYNAGGSS 701 (1227)
T ss_pred eEEEEecccc---cCceeccccccchHhhhcc---ccceEEEEcCCCc-------------ceEEEEeccceeecccccc
Confidence 8889998862 5678888888888876553 4457899998554 8899888776665332212
Q ss_pred ccccCCCcccccccCCCceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE-EEeeecccCCCCCeecceeEEEe
Q 046822 579 TLYSSDVKPTAKQLWKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-WVRTRTVVDSLSPKWNEQYTWEV 657 (971)
Q Consensus 579 ~~~~sd~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-~~rT~~~~~~~nP~Wne~~~~~v 657 (971)
+. -....++|.++|.|..|.+|... ...|++ ||||.+.+++. .+||-....++||.||+....++
T Consensus 702 s~----------~~~~~pIg~irv~v~~andl~n~---i~g~~~-dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v 767 (1227)
T COG5038 702 SK----------TVYDTPIGAIRVSVRKANDLRNE---IPGGKS-DPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPV 767 (1227)
T ss_pred ce----------eeecCccceEEEEeehhhccccc---ccCccc-ccceEEEecceeEEEEecccCccccceeeeEEEEe
Confidence 11 11237899999999999999853 457888 99999999764 69999999999999999999999
Q ss_pred eCCCcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccC----CceEee---eEeceecCCCCcccceEEEEEEE
Q 046822 658 FDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLES----DRVYTH---SYPLLMLHPSGVKKMGELHLAVR 730 (971)
Q Consensus 658 ~~~~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~----~~~~~~---~~~L~~~~~~g~~~~G~i~l~~~ 730 (971)
..+.+.|.++++|....+ .|..||.+.|+++++.. +..+.. .-+......+|.+..|++.+..+
T Consensus 768 ~sk~~r~~l~~~~~~~sg---------ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~ 838 (1227)
T COG5038 768 TSKNQRLTLECMDYEESG---------DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCR 838 (1227)
T ss_pred cCCccEEeeeeecchhcc---------ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEE
Confidence 999999999999998765 89999999999999854 211110 00001111123444688988888
Q ss_pred Eee
Q 046822 731 FSC 733 (971)
Q Consensus 731 f~~ 733 (971)
|-.
T Consensus 839 f~p 841 (1227)
T COG5038 839 FYP 841 (1227)
T ss_pred EEe
Confidence 864
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-22 Score=223.44 Aligned_cols=218 Identities=22% Similarity=0.334 Sum_probs=175.7
Q ss_pred cccccccccceeEEEEEEEEeecCC---CCCCCCeEEEEEECC---eeeeeeeecCC-CCccccEEEEecc--CCCcceE
Q 046822 261 TSSTYDLVEQMQYLYVRVVKARDIS---LFGGGEIVAEVKLGN---YRGITKRVSSN-HLQWDQVFAFSKD--CIQSSAA 331 (971)
Q Consensus 261 ~~~~~d~v~~~~~L~V~v~~a~~L~---~~~~~dpyV~v~~~~---~~~kT~~~~~~-nP~wne~f~f~~~--~~~~~~l 331 (971)
+....++..+...|.|+|++|++|+ ..|.+||||++++.. .+.+|++.+++ ||.|||+|.|.+. ++....|
T Consensus 156 l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L 235 (421)
T KOG1028|consen 156 LQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVL 235 (421)
T ss_pred EEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEE
Confidence 4444555666689999999999999 467899999999983 68999999999 9999999999966 3456788
Q ss_pred EEEEecC---CCCcccEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCc-cccEEEEEEEEEecccchHHHHHhhcccc
Q 046822 332 EIFVKES---DKDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDR-SKGGEVMVSIWFGTQADEAFAEAWHSKAA 407 (971)
Q Consensus 332 ~v~v~D~---~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~~~~~d~~~~~~~~~~~~ 407 (971)
.+.|||. +++++||++.++|..+..... ...|++|....... ...|+|++++.+-
T Consensus 236 ~l~V~~~drfsr~~~iGev~~~l~~~~~~~~-----~~~w~~l~~~~~~~~~~~gel~~sL~Y~---------------- 294 (421)
T KOG1028|consen 236 HLSVYDFDRFSRHDFIGEVILPLGEVDLLST-----TLFWKDLQPSSTDSEELAGELLLSLCYL---------------- 294 (421)
T ss_pred EEEEEecCCcccccEEEEEEecCcccccccc-----ceeeeccccccCCcccccceEEEEEEee----------------
Confidence 8888876 799999999999988876432 33799998753221 1237999988432
Q ss_pred ccCCCCccccccccccCCceEEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEE--CC---eEEEeeecCCCCCCCCCCC
Q 046822 408 NVHFDGLCSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQV--GN---QFLKTRIAAPSATRSLSNP 482 (971)
Q Consensus 408 ~~~~~~~~~~~~k~~~~p~l~~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~--g~---~~~rT~~~~~~~~~~~~nP 482 (971)
|.-+.|+|.|++|++|..++.. +.+||||++.+ +. .+.||.+. ++++||
T Consensus 295 -----------------p~~g~ltv~v~kar~L~~~~~~----~~~d~~Vk~~l~~~~~~~~kkkT~~~-----~~~~np 348 (421)
T KOG1028|consen 295 -----------------PTAGRLTVVVIKARNLKSMDVG----GLSDPYVKVTLLDGDKRLSKKKTSVK-----KKTLNP 348 (421)
T ss_pred -----------------cCCCeEEEEEEEecCCCcccCC----CCCCccEEEEEecCCceeeeeeeecc-----cCCCCC
Confidence 1234799999999999999998 89999999998 22 46667777 999999
Q ss_pred cccceeEEEeecCC--CCeEEEEEEeCcCCCCCceeEEEEEeccc
Q 046822 483 CWNEDLLFVVAEPF--EDYLLISVEDHVGPGKDEIVGKVLIPVSA 525 (971)
Q Consensus 483 ~w~e~f~f~~~~~~--~~~L~v~V~d~d~~~~d~~iG~~~i~L~~ 525 (971)
.|||.|.|.+.... +-.|.|+|||+|..+..++||.|.+....
T Consensus 349 v~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 349 VFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred cccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 99999999886433 34799999999999999999999887664
|
|
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-22 Score=185.88 Aligned_cols=126 Identities=69% Similarity=1.156 Sum_probs=108.5
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCccc
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNI 678 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~~ 678 (971)
.|+|+|++|+||+.+..+|+.|++ ||||++++|++++||+++.+++||+|||+|.|.+.++...|+|+|||++.++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~s-DPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~--- 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGST-DAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSH--- 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCC-CeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcc---
Confidence 489999999995444445778999 9999999999999999999999999999999999998889999999998651
Q ss_pred cCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEE
Q 046822 679 INNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLA 728 (971)
Q Consensus 679 ~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~ 728 (971)
-.....+|++||++.|+|+++..+..+..||+|...++++.++.|+|+++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~~ 126 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELECA 126 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEeC
Confidence 00112379999999999999999998999999998887778788999863
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.5e-22 Score=190.96 Aligned_cols=149 Identities=62% Similarity=1.034 Sum_probs=128.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECCeEEEeeecCCCCCCC-CCCCcccceeEEEeecCCCCeEEEEEEeC
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRS-LSNPCWNEDLLFVVAEPFEDYLLISVEDH 507 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~~~~rT~~~~~~~~~~-~~nP~w~e~f~f~~~~~~~~~L~v~V~d~ 507 (971)
+|+|+|++|++|+++|.+ |.+||||++.+|++.+||+++ .+ +.||.|||.|.|.+.++..+.|.|.|||+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~----g~sDPYV~v~l~~~~~kTk~~-----~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~ 71 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKN----RVPEVFVKAQLGNQVLRTRPS-----QTRNGNPSWNEELMFVAAEPFEDHLILSVEDR 71 (150)
T ss_pred CEEEEEEEeECCCCCCCC----CCCCeEEEEEECCEEeeeEec-----cCCCCCCcccCcEEEEecCccCCeEEEEEEEe
Confidence 489999999999999988 899999999999999999998 44 69999999999999888778999999999
Q ss_pred cCCCCCceeEEEEEeccccccccccccccceeEEcccCCCCCCCcceeeeeeeeeEEEEEccCcccccCccccccCCCcc
Q 046822 508 VGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEATLYSSDVKP 587 (971)
Q Consensus 508 d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~g~i~l~l~l~~~~~~~~~~~~~~sd~~~ 587 (971)
+..+++++||++.++|+++....+......+||+|....+. ...++..+.+|+|+|++++.+.+|+.+++++|++|+||
T Consensus 72 ~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~-~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 72 VGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGA-MEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred cCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCc-ccccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 88788999999999999987653344557899999877531 11123446689999999999999999999999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.2e-22 Score=218.45 Aligned_cols=239 Identities=21% Similarity=0.360 Sum_probs=189.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSN 84 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~ 84 (971)
..|.|+|.+|+||++++..|++||||.|.++.+ ..||.++.+++.|.|.|.|+|.+...- ..|.|.|||.| ++
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F----~~l~fYv~D~d-~~- 78 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTF----RYLSFYVWDRD-LK- 78 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcce----eeEEEEEeccc-cc-
Confidence 458999999999999999999999999999976 799999999999999999999998655 79999999999 66
Q ss_pred CCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeecccccccCCCCCCCCCCccccccccccccC
Q 046822 85 SRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTTEEVVKKGGFVSSLTPSSAFSKKNKKLQQQ 164 (971)
Q Consensus 85 ~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~e~~~~~~~~~k~~~~~~~~ 164 (971)
+|+.||++.|.-.++...+ ....||.|++-...+.++|+|++++.+......
T Consensus 79 ~D~~IGKvai~re~l~~~~--~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~-------------------------- 130 (800)
T KOG2059|consen 79 RDDIIGKVAIKREDLHMYP--GKDTWFSLQPVDPDSEVQGKVHLELALTEAIQS-------------------------- 130 (800)
T ss_pred cccccceeeeeHHHHhhCC--CCccceeccccCCChhhceeEEEEEEeccccCC--------------------------
Confidence 8999999999999997644 345799999988778999999999887432210
Q ss_pred CCcccccccccCCCCCCCCCccccCccCcCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCCCCccCCCCCccc
Q 046822 165 SPVMQVQQQHFGHQDMMSKPTHQQQSQNHVKPMEPNPGELKPVVITTAPRPVIPGARGGPTFGGGGGGGVYVNGSGEFSL 244 (971)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (971)
T Consensus 131 -------------------------------------------------------------------------------- 130 (800)
T KOG2059|consen 131 -------------------------------------------------------------------------------- 130 (800)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCCcccccccccccccceeEEEEEEEEeec-CC-CCCCCCeEEEEEECC----eeeeeeeecCC-CCcccc
Q 046822 245 KETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARD-IS-LFGGGEIVAEVKLGN----YRGITKRVSSN-HLQWDQ 317 (971)
Q Consensus 245 ~~~~p~~~~~~~~~~~~~~~~d~v~~~~~L~V~v~~a~~-L~-~~~~~dpyV~v~~~~----~~~kT~~~~~~-nP~wne 317 (971)
..+...++++++ +| .++.+|||+.+...+ +..+|++++++ ||.|||
T Consensus 131 ---------------------------~~~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~E 183 (800)
T KOG2059|consen 131 ---------------------------SGLVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDE 183 (800)
T ss_pred ---------------------------CcchhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhh
Confidence 000111122223 44 567799999999986 34699999999 999999
Q ss_pred EEEEeccCC---------------CcceEEEEEecC----CCCcccEEEEEEccccCCCCCCCCCCCCeEEEeecCC-CC
Q 046822 318 VFAFSKDCI---------------QSSAAEIFVKES----DKDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRR-GD 377 (971)
Q Consensus 318 ~f~f~~~~~---------------~~~~l~v~v~D~----~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~ 377 (971)
+|.|.+... ....|.|.+|+. ..++|+|++.+++........++ .||.|.... |.
T Consensus 184 v~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~-----~W~~Lqp~~~g~ 258 (800)
T KOG2059|consen 184 VFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPA-----AWYYLQPRPNGE 258 (800)
T ss_pred heeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCcc-----ceEEEecCCCcc
Confidence 999997754 234688888985 56999999999998887544433 899997643 21
Q ss_pred c----cccEEEEEEEEE
Q 046822 378 R----SKGGEVMVSIWF 390 (971)
Q Consensus 378 ~----~~~G~i~l~~~~ 390 (971)
+ ...|.+.+.+.+
T Consensus 259 ~~~~~~~lGslrl~v~y 275 (800)
T KOG2059|consen 259 KSSDGGDLGSLRLNVTY 275 (800)
T ss_pred cCCCCCCccceeeeEEe
Confidence 1 256778877754
|
|
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.8e-21 Score=176.25 Aligned_cols=119 Identities=21% Similarity=0.370 Sum_probs=103.4
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccC-CCCCeecceeEEEeeCCCcEEEEEEEeCCCCC
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVD-SLSPKWNEQYTWEVFDPCTVITVGVFDNCSLD 675 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~-~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~ 675 (971)
.|.|+|+|++|++|+.. + .|++ ||||++.+|++++||+++.+ +.||+|||.|.|.+.+....|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~---~-~g~s-DPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNY---G-LTRM-DPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcC---C-CCCC-CceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc
Confidence 38999999999988653 3 6899 99999999999999999976 79999999999999877678999999999886
Q ss_pred ccccCCCCCCCceeEEEEEEcc-cccCCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 676 KNIINNSGGRDSRIGKVRIRLS-TLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 676 ~~~~~~~~~~d~~iG~~~i~l~-~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
+|++||++.|+|. .+..++..+.||+|.... |.++.|+|+|.+.|
T Consensus 76 ---------~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~--~~~~~g~i~l~l~y 121 (121)
T cd04016 76 ---------MDERIAWTHITIPESVFNGETLDDWYSLSGKQ--GEDKEGMINLVFSY 121 (121)
T ss_pred ---------CCceEEEEEEECchhccCCCCccccEeCcCcc--CCCCceEEEEEEeC
Confidence 8999999999996 577787789999998533 44567999999975
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-21 Score=211.74 Aligned_cols=248 Identities=20% Similarity=0.301 Sum_probs=193.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECC-eEEEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEEEEeC
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGN-QFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDH 507 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~-~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d~ 507 (971)
-|+|.|.||+||+..+.. |..||||.|.+.+ .++||.++ .+++.|.|.|+|.|.++-.+. .|.|.|||.
T Consensus 6 sl~vki~E~knL~~~~~~----g~~D~yC~v~lD~E~v~RT~tv-----~ksL~PF~gEe~~~~iP~~F~-~l~fYv~D~ 75 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPS----GMRDCYCTVNLDQEEVCRTATV-----EKSLCPFFGEEFYFEIPRTFR-YLSFYVWDR 75 (800)
T ss_pred ceeEEEeecccCCCCCCC----CCcCcceEEeecchhhhhhhhh-----hhhcCCccccceEEecCccee-eEEEEEecc
Confidence 479999999999999888 8999999999975 79999999 899999999999999987666 799999999
Q ss_pred cCCCCCceeEEEEEeccccccccccccccceeEEcccCCCCCCCcceeeeeeeeeEEEEEccCcccccCccccccCCCcc
Q 046822 508 VGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEATLYSSDVKP 587 (971)
Q Consensus 508 d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~g~i~l~l~l~~~~~~~~~~~~~~sd~~~ 587 (971)
| .+.|+.||.+.|.=++|.... ..+.||+|..... +....|+|++++.+.....
T Consensus 76 d-~~~D~~IGKvai~re~l~~~~----~~d~W~~L~~VD~-------dsEVQG~v~l~l~~~e~~~-------------- 129 (800)
T KOG2059|consen 76 D-LKRDDIIGKVAIKREDLHMYP----GKDTWFSLQPVDP-------DSEVQGKVHLELALTEAIQ-------------- 129 (800)
T ss_pred c-cccccccceeeeeHHHHhhCC----CCccceeccccCC-------ChhhceeEEEEEEeccccC--------------
Confidence 9 899999999999988887653 4589999987652 3445799999987643321
Q ss_pred cccccCCCceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEE----EeeecccCCCCCeecceeEEEeeCC---
Q 046822 588 TAKQLWKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKW----VRTRTVVDSLSPKWNEQYTWEVFDP--- 660 (971)
Q Consensus 588 ~~~~~~~~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~----~rT~~~~~~~nP~Wne~~~~~v~~~--- 660 (971)
..-+..+++.++++.+.. +|.+ ||||++...+.+ .+|++.++|.+|.|+|.|.|.+.-.
T Consensus 130 ---------~~~~~c~~L~~r~~~P~~----~~~~-dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~ 195 (800)
T KOG2059|consen 130 ---------SSGLVCHVLKTRQGLPII----NGQC-DPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESY 195 (800)
T ss_pred ---------CCcchhhhhhhcccCcee----CCCC-CcceEEeecccchhhccccceeeeccCcchhhheeeeecccccc
Confidence 011223334444554432 4557 999999985444 5999999999999999999988643
Q ss_pred -------------CcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCc----ccce
Q 046822 661 -------------CTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGV----KKMG 723 (971)
Q Consensus 661 -------------~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~----~~~G 723 (971)
...|.+++||+.... .+++|+|++++++..+........||-|.....+.. ...|
T Consensus 196 s~ks~~~~~~e~~~l~irv~lW~~~~~~--------~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lG 267 (800)
T KOG2059|consen 196 SKKSLFMPEEEDDMLEIRVDLWNDLNLV--------INDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLG 267 (800)
T ss_pred ccchhcCcccCCceeeEEEeeccchhhh--------hhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCcc
Confidence 238999999954332 369999999999999875556689999986433111 1258
Q ss_pred EEEEEEEEeec
Q 046822 724 ELHLAVRFSCA 734 (971)
Q Consensus 724 ~i~l~~~f~~~ 734 (971)
.+++.+.|+..
T Consensus 268 slrl~v~y~~D 278 (800)
T KOG2059|consen 268 SLRLNVTYTED 278 (800)
T ss_pred ceeeeEEeeec
Confidence 88999998854
|
|
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-20 Score=178.29 Aligned_cols=126 Identities=55% Similarity=0.890 Sum_probs=110.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSR 86 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d 86 (971)
+|+|+|++|++|++++..|.+||||++.++++.++|++++++.||.|||.|.|.+..+..+....|.|.|||++.++.++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 48999999999999998899999999999999999999999999999999999998655444568999999999874368
Q ss_pred ceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEee
Q 046822 87 NFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVS 133 (971)
Q Consensus 87 ~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 133 (971)
+|||++.++++++...+ ....+||+|++++..++.+|+|.|++++.
T Consensus 81 ~~lG~v~i~l~~l~~~~-~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVPPS-EAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCCCC-CccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 99999999999997433 34569999998876677899999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.7e-20 Score=170.33 Aligned_cols=119 Identities=18% Similarity=0.317 Sum_probs=101.1
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccC-CCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCC
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYK-DLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSS 83 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~ 83 (971)
.|.|+|+|++|++|+..+ .|++||||++.+++++++|+++.+ +.||+|||+|.|.+.... ..|.|+|||++.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~----~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGV----DSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCC----cEEEEEEEeCCCCc
Confidence 378999999999988776 799999999999999999999875 899999999999987543 67999999999987
Q ss_pred CCCceeEEEEEeCcc-ccccCCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 84 NSRNFLGKVRAPCSQ-LCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 84 ~~d~~lG~~~i~l~~-l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
+|++||++.+++.. +. .+ +....||+|.+.... +..|+|+|.+.|
T Consensus 76 -~dd~iG~~~i~l~~~~~-~g-~~~~~W~~L~~~~~~-~~~g~i~l~l~y 121 (121)
T cd04016 76 -MDERIAWTHITIPESVF-NG-ETLDDWYSLSGKQGE-DKEGMINLVFSY 121 (121)
T ss_pred -CCceEEEEEEECchhcc-CC-CCccccEeCcCccCC-CCceEEEEEEeC
Confidence 79999999999974 44 23 335799999875432 467999999875
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-20 Score=176.43 Aligned_cols=119 Identities=29% Similarity=0.473 Sum_probs=102.1
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCC
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSL 674 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~ 674 (971)
..+|.|+|+|.+|.||...| ..|+| ||||++++|+++.||+++++++||+|||.|+|.|.|++.+|+++|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD---~~~sS-DPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRD---FLGSS-DPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeec---cccCC-CCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCC
Confidence 35799999999999998765 36899 999999999999999999999999999999999999999999999999988
Q ss_pred CccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEE
Q 046822 675 DKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVR 730 (971)
Q Consensus 675 ~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 730 (971)
+ +||+||.++|+|..+.... ..+| |....++|... |+|.++.+
T Consensus 79 s---------~dD~mG~A~I~l~p~~~~~--~~~~-l~~~~~~gt~~-~~v~~s~d 121 (168)
T KOG1030|consen 79 S---------SDDFMGEATIPLKPLLEAQ--KMDY-LKLELLTGTAI-GKVLLSRD 121 (168)
T ss_pred C---------cccccceeeeccHHHHHHh--hhhc-cccccCCCcEe-eEEEeccc
Confidence 7 9999999999999987655 3555 55555555444 76766554
|
|
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.2e-20 Score=173.52 Aligned_cols=122 Identities=25% Similarity=0.490 Sum_probs=103.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCC--CCCCcceEEEEEEeCCCCCCC
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDI--AELPYKHIEVNVFNERRSSNS 85 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~--~~l~~~~L~i~V~d~~~~~~~ 85 (971)
++|+|++|+||+.++..|.+||||+|.+++++++|+++++++||+|||+|.|.+... ++.....|.|.|||++.++ +
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~-~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG-L 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccC-C
Confidence 579999999999999999999999999999999999999999999999999998762 1233478999999999886 7
Q ss_pred CceeEEEEEeCccccccCCcccceEEEeEeC-CCCCeeeeEEEEEE
Q 046822 86 RNFLGKVRAPCSQLCKNEGEATAQLYTLEKR-SLFSHIRGEISLKL 130 (971)
Q Consensus 86 d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~-~~~~~~~G~i~l~~ 130 (971)
|++||++.|+++++....+....+||+|.++ +...+.+|+|+|++
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 9999999999999964334445699999864 33345789999986
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-19 Score=170.96 Aligned_cols=118 Identities=25% Similarity=0.390 Sum_probs=100.9
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeC------CCcEEEEEEEeCCC
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFD------PCTVITVGVFDNCS 673 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~------~~~~l~i~V~D~~~ 673 (971)
++|+|++|+||++++ ..|.+ ||||++++++..+||+++++++||+|||.|.|.+.+ ....|.|+|||++.
T Consensus 1 ~~V~V~~A~~L~~~d---~~g~~-dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~ 76 (126)
T cd08682 1 VQVTVLQARGLLCKG---KSGTN-DAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL 76 (126)
T ss_pred CEEEEEECcCCcCCC---CCcCC-CceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc
Confidence 579999999998764 47888 999999999999999999999999999999999987 35699999999997
Q ss_pred CCccccCCCCCCCceeEEEEEEccccc--CCceEeeeEeceecCCCCcccceEEEEEEE
Q 046822 674 LDKNIINNSGGRDSRIGKVRIRLSTLE--SDRVYTHSYPLLMLHPSGVKKMGELHLAVR 730 (971)
Q Consensus 674 ~~~~~~~~~~~~d~~iG~~~i~l~~l~--~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 730 (971)
++ +|++||++.|+|+++. .+.....||+|........+..|+|+|.++
T Consensus 77 ~~---------~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 77 LG---------LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred cC---------CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 75 8999999999999987 566678999998644333344699999873
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.8e-19 Score=172.91 Aligned_cols=125 Identities=25% Similarity=0.317 Sum_probs=109.0
Q ss_pred eeEEEEEEEeeeCCCCCCcc---------------------------CCCCcccCcEEEEEECCEE-EeeecccCCCCCe
Q 046822 597 IGVLEMGILGATGLMPMKFK---------------------------EGKGGSVDAYCVAKYGQKW-VRTRTVVDSLSPK 648 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~---------------------------~~~g~s~dpy~~~~~g~~~-~rT~~~~~~~nP~ 648 (971)
-|.|.|+|++|++|+.||.. .+.|++ ||||++.+++.. .||+++.++.||+
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s-DPYv~V~l~~~~~~rT~v~~~~~nP~ 84 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITS-DPYATVDLAGARVARTRVIENSENPV 84 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCc-CeEEEEEECCeEeeEEEEeCCCCCCc
Confidence 48999999999999998731 356888 999999998755 6999999999999
Q ss_pred ecceeEEEeeCCCcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEE
Q 046822 649 WNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLA 728 (971)
Q Consensus 649 Wne~~~~~v~~~~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~ 728 (971)
|||.|.|.+.++.+.|+|+|||+|.+ .+++||++.|+++++..+...+.||+|.....++.+..|+|++.
T Consensus 85 WnE~F~~~~~~~~~~l~~~V~d~d~~----------~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~ 154 (158)
T cd04015 85 WNESFHIYCAHYASHVEFTVKDNDVV----------GAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVS 154 (158)
T ss_pred cceEEEEEccCCCCEEEEEEEeCCCc----------CCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEE
Confidence 99999999988888999999999865 35899999999999988888899999987655555567999999
Q ss_pred EEEe
Q 046822 729 VRFS 732 (971)
Q Consensus 729 ~~f~ 732 (971)
++|+
T Consensus 155 ~~f~ 158 (158)
T cd04015 155 LQFT 158 (158)
T ss_pred EEEC
Confidence 9984
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=164.25 Aligned_cols=119 Identities=25% Similarity=0.367 Sum_probs=105.2
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-EEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCcc
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-KWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKN 677 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~ 677 (971)
.|+|+|++|+||+..+. .|.+ ||||++.+++ ..++|+++.+++||.|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~L~v~v~~a~~L~~~d~---~g~~-Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~-- 74 (121)
T cd04042 1 QLDIHLKEGRNLAARDR---GGTS-DPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL-- 74 (121)
T ss_pred CeEEEEEEeeCCCCcCC---CCCC-CCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC--
Confidence 37899999999998653 6888 9999999987 578999999999999999999999888889999999999775
Q ss_pred ccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 678 IINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 678 ~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
+|++||++.++|+++..+.....|++|.+.. +.+..|+|+|+++|+
T Consensus 75 -------~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~G~l~l~~~~~ 120 (121)
T cd04042 75 -------TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN--SDEDLGYISLVVTLT 120 (121)
T ss_pred -------CCcceEEEEEEHHHcCCCCCeEEEEECCCCC--CccCceEEEEEEEEC
Confidence 8999999999999999888888999997543 234579999999986
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.1e-19 Score=164.34 Aligned_cols=118 Identities=59% Similarity=1.053 Sum_probs=104.8
Q ss_pred EEEEEEEEeecCCCCCCCCeEEEEEECCeeeeeeeecCC-CCccccEEEEeccCCCcceEEEEEecC--CCCcccEEEEE
Q 046822 273 YLYVRVVKARDISLFGGGEIVAEVKLGNYRGITKRVSSN-HLQWDQVFAFSKDCIQSSAAEIFVKES--DKDDFLGRIWF 349 (971)
Q Consensus 273 ~L~V~v~~a~~L~~~~~~dpyV~v~~~~~~~kT~~~~~~-nP~wne~f~f~~~~~~~~~l~v~v~D~--~~d~~lG~~~i 349 (971)
+|.|+|++|+||+.. .+||||++.++++..+|++++++ ||+|||+|.|.+..+....|.+.|||. .++++||++.+
T Consensus 1 ~L~V~Vi~a~~L~~~-~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i 79 (121)
T cd08378 1 YLYVRVVKARGLPAN-SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCF 79 (121)
T ss_pred CEEEEEEEecCCCcc-cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEE
Confidence 589999999999933 89999999999999999999999 999999999998877778899999998 57999999999
Q ss_pred EccccCCCCCCCCCCCCeEEEeecCCCCccccEEEEEEEEEec
Q 046822 350 DLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGT 392 (971)
Q Consensus 350 ~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 392 (971)
+|+++..+...++...++||+|++..+ ....|+|+|++|||+
T Consensus 80 ~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~~~ 121 (121)
T cd08378 80 DLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWFGT 121 (121)
T ss_pred EhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEecC
Confidence 999998766555666789999998876 447899999999984
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-19 Score=166.51 Aligned_cols=119 Identities=35% Similarity=0.501 Sum_probs=100.9
Q ss_pred CCCCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 1 MGDGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 1 ~~~~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
|.+--|.|+|+|++|.||..+|..++|||||++.+++|+.+|+++++++||+|||.|.|.+.++. ..|.+.|||+|
T Consensus 1 m~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~----~~lkv~VyD~D 76 (168)
T KOG1030|consen 1 MEMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPN----TPLKVTVYDKD 76 (168)
T ss_pred CCccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCC----ceEEEEEEeCC
Confidence 45667999999999999999998899999999999999999999999999999999999999987 89999999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEE
Q 046822 81 RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLK 129 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~ 129 (971)
.++ +|||||.+.|++..+.... ..|+ |..........|.+.++
T Consensus 77 ~fs-~dD~mG~A~I~l~p~~~~~----~~~~-l~~~~~~gt~~~~v~~s 119 (168)
T KOG1030|consen 77 TFS-SDDFMGEATIPLKPLLEAQ----KMDY-LKLELLTGTAIGKVLLS 119 (168)
T ss_pred CCC-cccccceeeeccHHHHHHh----hhhc-cccccCCCcEeeEEEec
Confidence 998 8999999999999996432 1345 44333333455655544
|
|
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=162.23 Aligned_cols=116 Identities=28% Similarity=0.421 Sum_probs=98.5
Q ss_pred EEEEEEEEeeC---CCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCC
Q 046822 7 KLVVEVIAAHN---LMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSS 83 (971)
Q Consensus 7 ~L~V~V~~a~~---L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~ 83 (971)
.|.|+|++|+| |..+|..|++||||++++++++.||+++++++||+|||+|.|.+.++. ..|.|+|||++.++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~----~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPC----TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCC----CEEEEEEEECCCcc
Confidence 38999999999 899999999999999999999999999999999999999999997655 68999999998862
Q ss_pred -----CCCceeEEEEEeCccccccCCcccceEEEeEeCCCC-CeeeeEEEE
Q 046822 84 -----NSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLF-SHIRGEISL 128 (971)
Q Consensus 84 -----~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~-~~~~G~i~l 128 (971)
++|++||++.++++++.. +.....||+|...... .+..|+|.+
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLED--DRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccC--CCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 369999999999999864 3344689999875422 235677754
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-18 Score=161.01 Aligned_cols=119 Identities=29% Similarity=0.412 Sum_probs=102.6
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE-EEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCccc
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-WVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNI 678 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~~ 678 (971)
|.|.|++|+||++++. ..|.+ ||||.+.++++ ..+|+++++|+||.|||.|.|++.+....|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~~--~~g~s-DpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~--- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSG--PNKMR-DCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR--- 75 (121)
T ss_pred eEEEEEEccCCCCCCC--CCCCc-CcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC---
Confidence 6799999999998642 25788 99999999865 58999999999999999999999877679999999999775
Q ss_pred cCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 679 INNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 679 ~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
+|++||++.++|+++..+...+.||+|......+. ..|+|+|+++|
T Consensus 76 ------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~ 121 (121)
T cd08401 76 ------RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE-VQGKVHLELRL 121 (121)
T ss_pred ------CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc-ccEEEEEEEEC
Confidence 89999999999999987777789999986544333 36999999875
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-18 Score=166.77 Aligned_cols=125 Identities=25% Similarity=0.407 Sum_probs=106.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccC-CCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYK-DLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNS 85 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~ 85 (971)
.|.|+|++|+||+++|..|.+||||++.++++.++|++..+ ++||.|||+|.|.+.++. ...|.|.|||++..+ +
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~---~~~l~v~V~d~~~~~-~ 76 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF---EDHLILSVEDRVGPN-K 76 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCcc---CCeEEEEEEEecCCC-C
Confidence 38999999999999999999999999999999999999876 699999999999987644 268999999999876 7
Q ss_pred CceeEEEEEeCcccccc--CCcccceEEEeEeCCC------CCeeeeEEEEEEEeeec
Q 046822 86 RNFLGKVRAPCSQLCKN--EGEATAQLYTLEKRSL------FSHIRGEISLKLFVSTT 135 (971)
Q Consensus 86 d~~lG~~~i~l~~l~~~--~~~~~~~w~~L~~~~~------~~~~~G~i~l~~~~~~~ 135 (971)
|++||++.|+|+++... ......+||+|++.+. ..+.+|+|+|++.+...
T Consensus 77 dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 77 DEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred CCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 99999999999998643 2234579999987642 23567999999999743
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.4e-18 Score=159.63 Aligned_cols=120 Identities=25% Similarity=0.458 Sum_probs=101.4
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE-EEeeecccCCCCCeecceeEEEeeCCC-cEEEEEEEeCCCC
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-WVRTRTVVDSLSPKWNEQYTWEVFDPC-TVITVGVFDNCSL 674 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-~~rT~~~~~~~nP~Wne~~~~~v~~~~-~~l~i~V~D~~~~ 674 (971)
+..|+|+|++|+||++ .+.+ ||||++.+++. ..||++ +++.||.|||.|.|++..+. ..++|.|||++.+
T Consensus 3 ~~~L~V~Vi~A~~L~~------~~~~-DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~ 74 (126)
T cd08400 3 VRSLQLNVLEAHKLPV------KHVP-HPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKR 74 (126)
T ss_pred eeEEEEEEEEeeCCCC------CCCC-CeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCC
Confidence 4579999999999986 3467 99999999874 478987 56899999999999976654 4799999999876
Q ss_pred CccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEee
Q 046822 675 DKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSC 733 (971)
Q Consensus 675 ~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 733 (971)
+ +|++||++.|+|+++..+...+.||+|......+.+..|+|+|+++|..
T Consensus 75 ~---------~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 75 S---------KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred C---------CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 5 8999999999999999888889999998754434455799999999973
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.4e-18 Score=159.11 Aligned_cols=118 Identities=21% Similarity=0.412 Sum_probs=101.4
Q ss_pred EEEEEEEeeCCCCCC-CCCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCC
Q 046822 8 LVVEVIAAHNLMPKD-GEGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNS 85 (971)
Q Consensus 8 L~V~V~~a~~L~~~d-~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~ 85 (971)
|.|+|++|+||++++ ..|.+||||.|.++++ .++|+++++|+||.|||+|.|.+.+.. ..|.|.|||++.++ +
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~----~~l~~~v~d~~~~~-~ 76 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTF----RHLSFYIYDRDVLR-R 76 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCC----CEEEEEEEECCCCC-C
Confidence 789999999999974 4678999999999875 689999999999999999999998543 68999999999986 7
Q ss_pred CceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 86 RNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 86 d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
|++||++.++++++... .....||+|++....++..|+|++++.+
T Consensus 77 ~~~iG~~~i~l~~l~~~--~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 77 DSVIGKVAIKKEDLHKY--YGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CceEEEEEEEHHHccCC--CCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 99999999999998652 2346899999876556678999998753
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.5e-18 Score=161.25 Aligned_cols=120 Identities=29% Similarity=0.465 Sum_probs=101.0
Q ss_pred CCceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCC-cEEEEEEEeCC
Q 046822 594 KPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPC-TVITVGVFDNC 672 (971)
Q Consensus 594 ~~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~-~~l~i~V~D~~ 672 (971)
+..+|.|+|+|++|+||+.++ ..|.+ ||||++.++++.+||+++++++||.|||.|.|.+.++. ..|.|+|||++
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d---~~g~~-DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d 86 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCN---SNGKS-DPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD 86 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCC---CCCCc-CcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC
Confidence 467899999999999999865 47888 99999999999999999999999999999999998755 58999999999
Q ss_pred CCCccccCCCCCCCceeEEEEEEcccccC-----CceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 673 SLDKNIINNSGGRDSRIGKVRIRLSTLES-----DRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 673 ~~~~~~~~~~~~~d~~iG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
.++ +|++||++.++|.++.. ......|.+|. +. ..|+|+|+++|.
T Consensus 87 ~~~---------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~~-~~g~i~l~~~~~ 136 (136)
T cd08375 87 FFS---------PDDFLGRTEIRVADILKETKESKGPITKRLLLH-----EV-PTGEVVVKLDLQ 136 (136)
T ss_pred CCC---------CCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----cc-cceeEEEEEEeC
Confidence 765 89999999999999865 22234455542 32 359999999873
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.3e-18 Score=162.49 Aligned_cols=121 Identities=32% Similarity=0.491 Sum_probs=105.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe-------EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-------ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
.|+|+|++|+||+.++..|.+||||++.+.++ .++|+++++|.||.|||+|.|.+.... ..|.|+|||+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~----~~l~~~v~d~ 76 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPRE----HRLLFEVFDE 76 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCC----CEEEEEEEEC
Confidence 48999999999999998899999999999765 579999999999999999999987533 6899999999
Q ss_pred CCCCCCCceeEEEEEeCccccccCC----cccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 80 RRSSNSRNFLGKVRAPCSQLCKNEG----EATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~----~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
+.++ ++++||++.+++.++..... .....||+|+++...++.+|+|++++.|
T Consensus 77 ~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 77 NRLT-RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCC-CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 9986 79999999999999865322 2356899999876667789999999987
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.2e-18 Score=160.42 Aligned_cols=121 Identities=31% Similarity=0.490 Sum_probs=102.4
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCC----cEEEEEEEeCCCC
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPC----TVITVGVFDNCSL 674 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~----~~l~i~V~D~~~~ 674 (971)
.|.|+|++|+||++.+ ..|.+ ||||++.++++.+||+++.++.||.|||.|.|.+.++. ..|.|+|||++.+
T Consensus 1 ~L~V~vi~A~~L~~~d---~~g~~-dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~ 76 (127)
T cd04022 1 KLVVEVVDAQDLMPKD---GQGSS-SAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRS 76 (127)
T ss_pred CeEEEEEEeeCCCCCC---CCCCc-CcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCC
Confidence 3889999999999865 36788 99999999999999999999999999999999998643 4799999999865
Q ss_pred CccccCCCCCCCceeEEEEEEccccc-CCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 675 DKNIINNSGGRDSRIGKVRIRLSTLE-SDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 675 ~~~~~~~~~~~d~~iG~~~i~l~~l~-~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
+ .+|++||++.++|+++. .+.....||+|......+ +.+|+|+|++.||
T Consensus 77 ~--------~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~~ 126 (127)
T cd04022 77 G--------RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFS-RVRGEIGLKVYIT 126 (127)
T ss_pred c--------CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCC-CccEEEEEEEEEc
Confidence 3 26899999999999987 566668999998643333 3469999999886
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.8e-18 Score=158.90 Aligned_cols=116 Identities=27% Similarity=0.427 Sum_probs=100.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCCc
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSRN 87 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d~ 87 (971)
|.|+|++|+||+.+ .+||||++.++++..+|+++++++||.|||+|.|.+.... ...|.|+|||++.. +++
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~---~~~L~~~v~d~d~~--~~~ 72 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQ---GSTLEVSVWDKDKA--KDD 72 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCc---CCEEEEEEEeCCCC--cCc
Confidence 89999999999887 7999999999999999999999999999999999986543 37899999999986 689
Q ss_pred eeEEEEEeCccccccC---CcccceEEEeEeCCCCCeeeeEEEEEEEee
Q 046822 88 FLGKVRAPCSQLCKNE---GEATAQLYTLEKRSLFSHIRGEISLKLFVS 133 (971)
Q Consensus 88 ~lG~~~i~l~~l~~~~---~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 133 (971)
+||++.++++++.... .....+||+|+.... ++.+|+|+|.+++.
T Consensus 73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~~ 120 (121)
T cd08378 73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWFG 120 (121)
T ss_pred eeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEec
Confidence 9999999999985432 233468999988755 67899999999873
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=156.71 Aligned_cols=114 Identities=25% Similarity=0.458 Sum_probs=101.8
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCC-CcEEEEEEEeCCCCCcc
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDP-CTVITVGVFDNCSLDKN 677 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~-~~~l~i~V~D~~~~~~~ 677 (971)
+|+|+|++|+||+..+. .|.+ ||||++.++++.++|+++.+++||.|||.|.|.+.++ ...|.|+|||++.++
T Consensus 1 ~~~V~v~~a~~L~~~~~---~~~~-dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~-- 74 (116)
T cd08376 1 VVTIVLVEGKNLPPMDD---NGLS-DPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK-- 74 (116)
T ss_pred CEEEEEEEEECCCCCCC---CCCC-CcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC--
Confidence 37899999999998654 6788 9999999999999999999999999999999999876 569999999999765
Q ss_pred ccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 678 IINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 678 ~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
+|++||++.++|+++..+.....||+|.. ..|+|++++.++
T Consensus 75 -------~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~~ 115 (116)
T cd08376 75 -------KDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTLT 115 (116)
T ss_pred -------CCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEec
Confidence 89999999999999988888899999972 149999998875
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-17 Score=157.94 Aligned_cols=119 Identities=27% Similarity=0.510 Sum_probs=103.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNS 85 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~ 85 (971)
.|+|+|++|++|+.+|..|.+||||++.+++ +.++|+++.++.||.|||+|.|.+.... ..|.|+|||++.++ +
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~----~~l~~~v~D~d~~~-~ 75 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVT----QPLYIKVFDYDRGL-T 75 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCC----CeEEEEEEeCCCCC-C
Confidence 3899999999999999999999999999987 5789999999999999999999987543 78999999999986 7
Q ss_pred CceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEee
Q 046822 86 RNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVS 133 (971)
Q Consensus 86 d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 133 (971)
|++||++.++++++... .....|++|.+++. .+..|+|.+.+.+.
T Consensus 76 ~~~iG~~~~~l~~l~~~--~~~~~~~~L~~~~~-~~~~G~l~l~~~~~ 120 (121)
T cd04042 76 DDFMGSAFVDLSTLELN--KPTEVKLKLEDPNS-DEDLGYISLVVTLT 120 (121)
T ss_pred CcceEEEEEEHHHcCCC--CCeEEEEECCCCCC-ccCceEEEEEEEEC
Confidence 99999999999998642 23457999976543 35789999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=156.88 Aligned_cols=118 Identities=26% Similarity=0.468 Sum_probs=103.0
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCcc
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKN 677 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~ 677 (971)
|.|+|+|++|+||+.++. .|.+ ||||++.+++..++|++++++.||.|||.|.|++.+....|.|+|||++.++
T Consensus 1 g~l~v~v~~a~~L~~~~~---~~~~-dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~-- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAADI---GGKS-DPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK-- 74 (119)
T ss_pred CEEEEEEEeeeCCCCCCC---CCCC-CcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC--
Confidence 789999999999998654 6788 9999999999899999999999999999999999887789999999998654
Q ss_pred ccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 678 IINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 678 ~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
++++||++.+++.++..+. ..||+|......+. ..|+|+|+++|
T Consensus 75 -------~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~-~~G~i~l~~~~ 118 (119)
T cd08377 75 -------KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRTR-AKGSILLEMDV 118 (119)
T ss_pred -------CCceeeEEEEEHHHCCCCC--ceEEECcccCCCCc-eeeEEEEEEEe
Confidence 8999999999999998766 68999985543333 45999999986
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.8e-18 Score=156.94 Aligned_cols=106 Identities=22% Similarity=0.296 Sum_probs=90.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-------eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-------QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
+|+|+|++|+||+.++ .|.+||||+|++.+ ++++|+++.+|+||+|||+|.|.+...+.+....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999988 59999999999842 357899999999999999999999764445567899999999
Q ss_pred CCCCCCCceeEEEEEeCccccccCCcccceEEEeEeC
Q 046822 80 RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~ 116 (971)
+..+ ++++||++.+++.++...+ ....|++|+++
T Consensus 80 d~~~-~dd~IG~~~l~l~~~~~~~--~~~~w~~L~~~ 113 (120)
T cd08395 80 CFAR-DDRLVGVTVLQLRDIAQAG--SCACWLPLGRR 113 (120)
T ss_pred cccC-CCCEEEEEEEEHHHCcCCC--cEEEEEECcCc
Confidence 8754 7999999999999997543 34589999875
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.1e-18 Score=158.44 Aligned_cols=116 Identities=27% Similarity=0.475 Sum_probs=99.1
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccC-CCCCeecceeEEEeeCC-CcEEEEEEEeCCCCC
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVD-SLSPKWNEQYTWEVFDP-CTVITVGVFDNCSLD 675 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~-~~nP~Wne~~~~~v~~~-~~~l~i~V~D~~~~~ 675 (971)
|.|+|+|++|+||+..+ ..|++ ||||++.+++...+|+++.+ ++||.|||.|.|.+..+ ...|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~~---~~~~~-dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKR---KLDKQ-DPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR- 75 (118)
T ss_pred CEEEEEEEEccCCCCCC---cCCCC-CceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC-
Confidence 78999999999999864 47888 99999999999999999855 79999999999999874 46899999999743
Q ss_pred ccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 676 KNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 676 ~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
.|++||++.++++++..+.....||+|... | +..|+|+|++.|
T Consensus 76 ---------~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~---~-~~~G~i~l~l~f 118 (118)
T cd08681 76 ---------KPDLIGDTEVDLSPALKEGEFDDWYELTLK---G-RYAGEVYLELTF 118 (118)
T ss_pred ---------CCcceEEEEEecHHHhhcCCCCCcEEeccC---C-cEeeEEEEEEEC
Confidence 389999999999998766666899999742 3 356999999976
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.9e-18 Score=154.49 Aligned_cols=100 Identities=20% Similarity=0.308 Sum_probs=89.3
Q ss_pred eeEEEEEEEEeecCCCCCCCCeEEEEEECCeeeeeeeecCCCCccccEEEEeccCCCcceEEEEEecC--CCCcccEEEE
Q 046822 271 MQYLYVRVVKARDISLFGGGEIVAEVKLGNYRGITKRVSSNHLQWDQVFAFSKDCIQSSAAEIFVKES--DKDDFLGRIW 348 (971)
Q Consensus 271 ~~~L~V~v~~a~~L~~~~~~dpyV~v~~~~~~~kT~~~~~~nP~wne~f~f~~~~~~~~~l~v~v~D~--~~d~~lG~~~ 348 (971)
|+.|.|+|++|++|+..+..||||+|++++++.+|++.+++||.|||.|.|.+.+.+.. |.|+|||+ ..||+||++.
T Consensus 1 m~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~~nP~WnE~F~F~~~~~~~~-L~v~V~dkd~~~DD~lG~v~ 79 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRGSQPCWEQDFMFEINRLDLG-LVIELWNKGLIWDTLVGTVW 79 (127)
T ss_pred CceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCCCCCceeeEEEEEEcCCCCE-EEEEEEeCCCcCCCceEEEE
Confidence 57899999999999966678999999999999999999766999999999999887644 99999998 6999999999
Q ss_pred EEccccCCCCCCCCCCCCeEEEeecC
Q 046822 349 FDLNEVPRRVPPDSQLAPQWYRMEDR 374 (971)
Q Consensus 349 i~l~~l~~~~~~~~~~~~~w~~L~~~ 374 (971)
|+|.++..+ +.+++++||+|+..
T Consensus 80 i~L~~v~~~---~~~~~~~Wy~L~~~ 102 (127)
T cd08394 80 IPLSTIRQS---NEEGPGEWLTLDSE 102 (127)
T ss_pred EEhHHcccC---CCCCCCccEecChH
Confidence 999999876 45788999999854
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-17 Score=157.48 Aligned_cols=119 Identities=20% Similarity=0.334 Sum_probs=101.5
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC--CEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCcc
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG--QKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKN 677 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g--~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~ 677 (971)
|.|+|++|+||+. ..|.+ ||||++.++ .+.+||+++.+++||.|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~~g~~-dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~-- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----AAGSS-NPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS-- 72 (126)
T ss_pred CEEEEEEecCCCC-----CCCCc-CCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC--
Confidence 5799999999986 26788 999999997 4678999999999999999999999766679999999999664
Q ss_pred ccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEee
Q 046822 678 IINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSC 733 (971)
Q Consensus 678 ~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 733 (971)
+|++||++.++++++..+.....||+|......+.+..|+|++++.|..
T Consensus 73 -------~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 73 -------DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred -------CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 8999999999999998777678899997543223345799999999974
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=159.19 Aligned_cols=123 Identities=24% Similarity=0.380 Sum_probs=105.8
Q ss_pred eEEEEEEEEeeCCCCCCC--CCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCC
Q 046822 6 EKLVVEVIAAHNLMPKDG--EGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSS 83 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~--~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~ 83 (971)
|.|+|+|++|+||+.++. .+.+||||++.++++.++|+++++++||.|||+|.|.+.... ...|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~---~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ---NQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCC---CCEEEEEEEECCCCC
Confidence 679999999999999988 889999999999999999999999999999999999997633 379999999999876
Q ss_pred CCCceeEEEEEeCcccccc-CCcccceEEEeEeCC--CCCeeeeEEEEEEEe
Q 046822 84 NSRNFLGKVRAPCSQLCKN-EGEATAQLYTLEKRS--LFSHIRGEISLKLFV 132 (971)
Q Consensus 84 ~~d~~lG~~~i~l~~l~~~-~~~~~~~w~~L~~~~--~~~~~~G~i~l~~~~ 132 (971)
++++||++.+++.++... ......+||+|.+.. ......|+|++++.|
T Consensus 78 -~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 -GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred -CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 789999999999998742 223346899998763 334578999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=156.58 Aligned_cols=117 Identities=23% Similarity=0.405 Sum_probs=100.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeeccc-CCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKY-KDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSN 84 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~ 84 (971)
|.|.|+|++|+||+.++..+.+||||++.++++.++|+++. +++||.|||.|.|.+.... ...|.|+|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~---~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDK---KPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCC---CCEEEEEEEeCCCCC-
Confidence 67999999999999999999999999999999999999875 5799999999999997643 378999999998863
Q ss_pred CCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 85 SRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 85 ~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
|++||++.+++.++.... ...+||+|...+ +..|+|.+++.|
T Consensus 77 -~~~iG~~~~~l~~~~~~~--~~~~w~~L~~~~---~~~G~i~l~l~f 118 (118)
T cd08681 77 -PDLIGDTEVDLSPALKEG--EFDDWYELTLKG---RYAGEVYLELTF 118 (118)
T ss_pred -CcceEEEEEecHHHhhcC--CCCCcEEeccCC---cEeeEEEEEEEC
Confidence 899999999999986532 245899998643 578999999875
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-17 Score=154.50 Aligned_cols=118 Identities=35% Similarity=0.563 Sum_probs=104.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNS 85 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~ 85 (971)
|.|.|+|++|+||+.++..+.+||||++.++++..+|++++++.||.|||+|.|.+.+.. ..|.|+|||++..+ +
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~----~~l~~~v~d~~~~~-~ 75 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIH----DVLEVTVYDEDKDK-K 75 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcC----CEEEEEEEECCCCC-C
Confidence 679999999999999998899999999999999999999999999999999999987543 78999999999876 7
Q ss_pred CceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 86 RNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 86 d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
+++||++.+++.++... ...||+|.++....+.+|+|.+++.+
T Consensus 76 ~~~iG~~~~~l~~~~~~----~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 76 PEFLGKVAIPLLSIKNG----ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred CceeeEEEEEHHHCCCC----CceEEECcccCCCCceeeEEEEEEEe
Confidence 99999999999998532 24799998876666789999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-17 Score=153.93 Aligned_cols=118 Identities=27% Similarity=0.455 Sum_probs=101.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCC
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSR 86 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d 86 (971)
|.|+|++|++|.+++..|.+||||++.++++ ..+|+++++++||.|||.|.|.+.... ..|.|.|||++.++ +|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~----~~l~v~v~d~~~~~-~d 76 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGF----HTVSFYVLDEDTLS-RD 76 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCC----CEEEEEEEECCCCC-CC
Confidence 7899999999999999999999999999876 479999999999999999999987543 68999999999986 79
Q ss_pred ceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEE
Q 046822 87 NFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLF 131 (971)
Q Consensus 87 ~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 131 (971)
++||++.++++.+... ......|++|++........|+|.+.+.
T Consensus 77 ~~iG~~~~~~~~~~~~-~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 77 DVIGKVSLTREVISAH-PRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CEEEEEEEcHHHhccC-CCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999999999888542 2234589999876554567899998875
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-17 Score=155.39 Aligned_cols=120 Identities=26% Similarity=0.521 Sum_probs=102.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEcC--eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCC
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEK--QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNS 85 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~--~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~ 85 (971)
|.|+|++|+||+. ..|.+||||++.+++ +.++|+++++++||.|||.|.|.+.... ..|.|+|||++..+ +
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~----~~l~~~v~d~~~~~-~ 73 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNS----KELLFEVYDNGKKS-D 73 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCC----CEEEEEEEECCCCC-C
Confidence 6899999999987 678999999999974 5789999999999999999999986433 78999999999986 7
Q ss_pred CceeEEEEEeCccccccCCcccceEEEeEeCCC-CCeeeeEEEEEEEeeecc
Q 046822 86 RNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSL-FSHIRGEISLKLFVSTTE 136 (971)
Q Consensus 86 d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~-~~~~~G~i~l~~~~~~~~ 136 (971)
|++||++.+++.++..... ...||+|.++.. .....|+|.+.+.|.+.+
T Consensus 74 ~~~lG~~~i~l~~l~~~~~--~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 74 SKFLGLAIVPFDELRKNPS--GRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred CceEEEEEEeHHHhccCCc--eeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 9999999999999875332 357999987632 346799999999997654
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-17 Score=153.71 Aligned_cols=121 Identities=24% Similarity=0.359 Sum_probs=104.4
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCC
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSN 84 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~ 84 (971)
...|+|+|++|++|...+..|.+||||++.++++.++|++++++.||.|||.|.|.+.+.. ..|.|+|||++.+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~----~~l~i~V~d~~~~-- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPR----SPIKIQVWNSNLL-- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCC----CEEEEEEEECCCC--
Confidence 4689999999999999998999999999999999999999999999999999999887654 7999999999986
Q ss_pred CCceeEEEEEeCccccccCCcccceEEEeEeCC--CCCeeeeEEEEEEEeeec
Q 046822 85 SRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS--LFSHIRGEISLKLFVSTT 135 (971)
Q Consensus 85 ~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~--~~~~~~G~i~l~~~~~~~ 135 (971)
+|++||++.+++..+.. ...+||+|+++. .+++..|+|.+++++.+.
T Consensus 76 ~d~~lG~~~~~l~~~~~----~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 76 CDEFLGQATLSADPNDS----QTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred CCCceEEEEEecccCCC----cCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 48999999999987531 223779997543 456789999999988654
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-17 Score=155.91 Aligned_cols=105 Identities=30% Similarity=0.423 Sum_probs=90.7
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
.+.|.|+|++|+||++++ .|.+||||++.+.+ .+++|+++++++||.|||+|.|.+....++....|.|.|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 578999999999999999 89999999999973 478999999999999999999997433345568999999999
Q ss_pred CCCCCCCceeEEEEEeCccccccCCcccceEEEe
Q 046822 80 RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTL 113 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L 113 (971)
+.++ ++++||++.|+|.++... +....||+|
T Consensus 91 d~~~-~~~~lG~~~i~l~~l~~~--~~~~~W~~L 121 (122)
T cd08381 91 DSLV-ENEFLGGVCIPLKKLDLS--QETEKWYPL 121 (122)
T ss_pred CCCc-CCcEEEEEEEeccccccC--CCccceEEC
Confidence 9986 799999999999998642 234589987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-17 Score=151.87 Aligned_cols=92 Identities=22% Similarity=0.328 Sum_probs=82.4
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
..+.|.|+|++|+||+ . .|.+||||++.+.. .+++|+++++|+||+|||+|.|.+.. +++....|.|+|||+
T Consensus 12 ~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~-~~l~~~tL~~~V~d~ 87 (118)
T cd08677 12 QKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPE-EESLDGTLTLTLRCC 87 (118)
T ss_pred cCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCH-HHhCCcEEEEEEEeC
Confidence 4689999999999998 3 46699999999973 47899999999999999999999874 567889999999999
Q ss_pred CCCCCCCceeEEEEEeCcccc
Q 046822 80 RRSSNSRNFLGKVRAPCSQLC 100 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~ 100 (971)
|+++ ++++||++.++++++.
T Consensus 88 Drfs-~~d~IG~v~l~l~~~~ 107 (118)
T cd08677 88 DRFS-RHSTLGELRLKLADVS 107 (118)
T ss_pred CCCC-CCceEEEEEEcccccc
Confidence 9998 8999999999999874
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-17 Score=154.86 Aligned_cols=116 Identities=34% Similarity=0.592 Sum_probs=101.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCC----
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRS---- 82 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~---- 82 (971)
.|+|+|++|++|+.+|..|.+||||++.++++.++|+++.+++||.|||+|.|.+..+. ..|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~----~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSS----DRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCC----CEEEEEEEECCCCcccc
Confidence 68999999999999999999999999999989999999999999999999999986543 6899999999852
Q ss_pred ------CCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEE
Q 046822 83 ------SNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKL 130 (971)
Q Consensus 83 ------~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~ 130 (971)
...+++||++.+++.++.. ....||.|++++.++.++|+|++++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~----~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSG----EMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccC----CCCeEEECccCCCCCcEeEEEEEEC
Confidence 1268999999999998732 2358999999888788999999874
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-17 Score=159.34 Aligned_cols=109 Identities=28% Similarity=0.401 Sum_probs=90.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCC------------CCCCCc
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPD------------IAELPY 69 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~------------~~~l~~ 69 (971)
+|.|+|++|+||+. .+|.+||||+|.+.+ ++++|+++++|+||+|||+|.|.+.. .+++..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 48999999999998 468999999999986 57899999999999999999999851 123345
Q ss_pred ceEEEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCC
Q 046822 70 KHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLF 119 (971)
Q Consensus 70 ~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~ 119 (971)
..|.|.|||++.++ +|+|||++.|++..+.... .....||+|++++.+
T Consensus 79 ~~L~i~V~d~~~~~-~ddfLG~v~i~l~~l~~~~-~~~~~W~~L~~~~~~ 126 (148)
T cd04010 79 LELRVDLWHASMGG-GDVFLGEVRIPLRGLDLQA-GSHQAWYFLQPREEK 126 (148)
T ss_pred EEEEEEEEcCCCCC-CCceeEEEEEecccccccC-CcCcceeecCCcccc
Confidence 68999999999875 7999999999999986541 233589999887543
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-17 Score=151.02 Aligned_cols=104 Identities=27% Similarity=0.425 Sum_probs=92.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSR 86 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d 86 (971)
.|.|+|++|++|+..+..+.+||||+++++++.++|++++++.||.|||.|.|.+.++. ...|.|+|||++. +
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~v~v~d~~~----~ 73 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPE---NQELEIEVKDDKT----G 73 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCC---CCEEEEEEEECCC----C
Confidence 48999999999999998899999999999999999999999999999999999998754 2789999999875 7
Q ss_pred ceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 87 NFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 87 ~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
++||++.++|.++.........+||+|++++
T Consensus 74 ~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 74 KSLGSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred CccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence 8999999999999765445567999998654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=151.71 Aligned_cols=119 Identities=24% Similarity=0.403 Sum_probs=98.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSN 84 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~ 84 (971)
..|+|+|++|+||+.+ +.+||||+|.+++. ..+|+++ ++.||.|||+|.|.+..+.. ..+.|.|||++..+
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~---~~l~v~v~d~~~~~- 75 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDV---NSFTISLSNKAKRS- 75 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCc---CEEEEEEEECCCCC-
Confidence 5799999999999875 47999999999875 4788875 68999999999998654432 57899999999986
Q ss_pred CCceeEEEEEeCccccccCCcccceEEEeEeCCC-CCeeeeEEEEEEEeee
Q 046822 85 SRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSL-FSHIRGEISLKLFVST 134 (971)
Q Consensus 85 ~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~-~~~~~G~i~l~~~~~~ 134 (971)
+|++||++.++++++.. +.....||+|++.+. ..+..|+|++++.|..
T Consensus 76 ~d~~iG~v~i~l~~l~~--~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 KDSEIAEVTVQLSKLQN--GQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCCeEEEEEEEHhHccC--CCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 89999999999999865 233468999998643 3467799999999865
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.8e-17 Score=152.88 Aligned_cols=119 Identities=27% Similarity=0.406 Sum_probs=100.4
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCC-CcEEEEEEEeCCCCCcc
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDP-CTVITVGVFDNCSLDKN 677 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~-~~~l~i~V~D~~~~~~~ 677 (971)
.|+|+|++|++|+.++. .|.+ ||||++.+++..++|+++++++||.|||.|.|.+.+. ...|.|+|||++.++
T Consensus 1 ~L~v~vi~a~~L~~~d~---~~~~-DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~-- 74 (123)
T cd04025 1 RLRCHVLEARDLAPKDR---NGTS-DPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS-- 74 (123)
T ss_pred CEEEEEEEeeCCCCCCC---CCCc-CceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC--
Confidence 38999999999988653 6788 9999999999999999999999999999999999875 458999999999765
Q ss_pred ccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCC---CcccceEEEEEEE
Q 046822 678 IINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPS---GVKKMGELHLAVR 730 (971)
Q Consensus 678 ~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~---g~~~~G~i~l~~~ 730 (971)
++++||++.++|+++..+.....||.|...... ..+..|.|++.|+
T Consensus 75 -------~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 75 -------KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred -------CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 899999999999999776666899999864322 1234699998774
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.6e-17 Score=153.94 Aligned_cols=122 Identities=25% Similarity=0.422 Sum_probs=101.7
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeC-CCcEEEEEEEeCCCCCc
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFD-PCTVITVGVFDNCSLDK 676 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~-~~~~l~i~V~D~~~~~~ 676 (971)
|.|.|+|++|+||+..+. ++.|.+ ||||++.++++.++|+++++++||.|||.|.|++.+ ....|.|+|||++.++
T Consensus 1 g~l~v~v~~a~~L~~~~~-~~~~~~-dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~- 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDR-SGKGKS-DPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA- 77 (128)
T ss_pred CEEEEEEEEeeCCCcccC-CCCCCc-CCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC-
Confidence 789999999999997542 126788 999999999999999999999999999999999997 4669999999999664
Q ss_pred cccCCCCCCCceeEEEEEEccccc---CCceEeeeEeceecCCC-CcccceEEEEEEE
Q 046822 677 NIINNSGGRDSRIGKVRIRLSTLE---SDRVYTHSYPLLMLHPS-GVKKMGELHLAVR 730 (971)
Q Consensus 677 ~~~~~~~~~d~~iG~~~i~l~~l~---~~~~~~~~~~L~~~~~~-g~~~~G~i~l~~~ 730 (971)
+|++||++.|+|.++. .......||+|...... .....|+|+|.+.
T Consensus 78 --------~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 78 --------GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred --------CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence 8899999999999986 33445789999865322 2234799999885
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.4e-17 Score=155.02 Aligned_cols=119 Identities=27% Similarity=0.423 Sum_probs=99.7
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE-------EEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeC
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-------WVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDN 671 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-------~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~ 671 (971)
.|+|+|++|+||+..+ ..|.+ ||||++.+++. .++|+++.+++||.|||.|.|.+......|.|+|||+
T Consensus 1 ~L~v~Vi~a~~L~~~d---~~~~~-Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~ 76 (133)
T cd04033 1 ILRVKVLAGIDLAKKD---IFGAS-DPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDE 76 (133)
T ss_pred CEEEEEEEeECCCccc---CCCCc-CcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEEC
Confidence 3889999999998764 47788 99999999643 5799999999999999999999987677899999999
Q ss_pred CCCCccccCCCCCCCceeEEEEEEcccccCCce------EeeeEeceecCCCCcccceEEEEEEEE
Q 046822 672 CSLDKNIINNSGGRDSRIGKVRIRLSTLESDRV------YTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 672 ~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
+.++ +|++||++.++++++..+.. ...||+|......+ +..|+|+|++.|
T Consensus 77 ~~~~---------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~ 132 (133)
T cd04033 77 NRLT---------RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY 132 (133)
T ss_pred CCCC---------CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence 9765 89999999999999865432 35899998644334 346999999987
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.3e-17 Score=151.61 Aligned_cols=118 Identities=27% Similarity=0.402 Sum_probs=100.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEc-CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFE-KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNS 85 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~-~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~ 85 (971)
.|+|+|++|++|+.++..|.+||||++.++ .+.++|+++++++||.|||+|.|.+.. . ..|.|+|||++.++..
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~----~~l~i~V~d~~~~~~~ 75 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-S----SIITIQVFDQKKFKKK 75 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-C----CEEEEEEEECCCCCCC
Confidence 389999999999999989999999999997 678999999999999999999999864 2 7999999999988633
Q ss_pred -CceeEEEEEeCccccccCCcccceEEEeEeCCC--CCeeeeEEEEEE
Q 046822 86 -RNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSL--FSHIRGEISLKL 130 (971)
Q Consensus 86 -d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~--~~~~~G~i~l~~ 130 (971)
|++||++.+++.++...... ...||+|++... .....|+|.+++
T Consensus 76 ~d~~lG~~~i~l~~l~~~~~~-~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 76 DQGFLGCVRIRANAVLPLKDT-GYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCceEeEEEEEHHHccccCCC-ccceeEeecCCCCCCceEeeEEEEEe
Confidence 58999999999999754332 347999977643 557789999875
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=150.73 Aligned_cols=117 Identities=30% Similarity=0.475 Sum_probs=99.4
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE-EEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCccc
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-WVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNI 678 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~~ 678 (971)
|.|+|++|+||++++. .|++ ||||++.++++ ..||+++.+++||.|||.|.|.+.+....|.|+|||++.++
T Consensus 2 l~v~vi~a~~L~~~d~---~g~~-DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~--- 74 (121)
T cd04054 2 LYIRIVEGKNLPAKDI---TGSS-DPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS--- 74 (121)
T ss_pred EEEEEEEeeCCcCCCC---CCCC-CceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC---
Confidence 7899999999998754 7888 99999999876 47999999999999999999999877789999999999775
Q ss_pred cCCCCCCCceeEEEEEEcccccCC-ceEeeeEeceecCCCCcccceEEEEEEE
Q 046822 679 INNSGGRDSRIGKVRIRLSTLESD-RVYTHSYPLLMLHPSGVKKMGELHLAVR 730 (971)
Q Consensus 679 ~~~~~~~d~~iG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 730 (971)
+|++||++.+++..+..+ .....|++|...+..+. ..|+|+++++
T Consensus 75 ------~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~-~~G~i~l~~~ 120 (121)
T cd04054 75 ------RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEE-VQGEIHLELS 120 (121)
T ss_pred ------CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCc-cccEEEEEEE
Confidence 899999999999988653 33578999986544333 4599999875
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=150.31 Aligned_cols=119 Identities=24% Similarity=0.356 Sum_probs=100.0
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCc
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDK 676 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~ 676 (971)
.+.|+|+|++|++|+..+ ..|.+ ||||++.++++.+||++++++.||.|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~~~~V~v~~A~~L~~~d---~~g~~-dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQD---SGGGA-DPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCC---CCCCc-CccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC--
Confidence 468999999999998754 47888 999999999999999999999999999999999998888999999999854
Q ss_pred cccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecC--CCCcccceEEEEEEEEe
Q 046822 677 NIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLH--PSGVKKMGELHLAVRFS 732 (971)
Q Consensus 677 ~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~--~~g~~~~G~i~l~~~f~ 732 (971)
+|++||++.++++.+..+. .++|+|.... .++ +..|+|.+.+.+.
T Consensus 76 --------~d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~-~~~G~i~~~~~~~ 122 (126)
T cd04046 76 --------CDEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAG-EVPGTISVKVTSS 122 (126)
T ss_pred --------CCCceEEEEEecccCCCcC--ceEEEcccCCCCCCC-CCCCEEEEEEEEc
Confidence 5899999999999875443 5789986322 223 3469999998654
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=9e-17 Score=147.86 Aligned_cols=101 Identities=18% Similarity=0.282 Sum_probs=88.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNS 85 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~ 85 (971)
+.|.|+|++|++|+.++ ..||||+|++++++.+|++.++ .||.|||.|.|.+.+.. ..|.|+|||++.+ +
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~----~~L~v~V~dkd~~--~ 71 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLD----LGLVIELWNKGLI--W 71 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCC----CEEEEEEEeCCCc--C
Confidence 58999999999997654 5699999999999999999987 59999999999997654 5699999999965 6
Q ss_pred CceeEEEEEeCccccccCCcccceEEEeEeC
Q 046822 86 RNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116 (971)
Q Consensus 86 d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~ 116 (971)
|+|||++.|+|.++...+.....+||+|++.
T Consensus 72 DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred CCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 9999999999999977666666799999865
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=151.56 Aligned_cols=118 Identities=31% Similarity=0.446 Sum_probs=101.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSR 86 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d 86 (971)
+|+|+|++|++|..++..+.+||||++.++++..+|+++++++||.|||+|.|.+.... ...|.|+|||++.++ ++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~~l~~~v~d~~~~~-~~ 76 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGA---DSPLSVEVWDWDLVS-KN 76 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCC---CCEEEEEEEECCCCC-CC
Confidence 48999999999999998889999999999999999999999999999999999987643 378999999999876 78
Q ss_pred ceeEEEEEeCccccccCCcccceEEEeEeCCC----CCeeeeEEEEEE
Q 046822 87 NFLGKVRAPCSQLCKNEGEATAQLYTLEKRSL----FSHIRGEISLKL 130 (971)
Q Consensus 87 ~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~----~~~~~G~i~l~~ 130 (971)
++||++.++++++.... ....||.|.+.+. +.+..|.|.+.+
T Consensus 77 ~~iG~~~~~l~~l~~~~--~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 77 DFLGKVVFSIQTLQQAK--QEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred cEeEEEEEEHHHcccCC--CCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 99999999999986432 2357999987532 235679988875
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.71 E-value=5e-17 Score=153.71 Aligned_cols=109 Identities=27% Similarity=0.384 Sum_probs=93.5
Q ss_pred CCeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDGE-GSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVF 77 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~-g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~ 77 (971)
..+.|.|+|++|+||++++.. |.+||||++.+.. .++||+++++++||+|||+|.|.+.. +++....|.+.||
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~-~~l~~~~L~v~V~ 91 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEA-DLLSSRQLQVSVW 91 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCH-HHhCCcEEEEEEE
Confidence 467899999999999999875 9999999999962 37799999999999999999999864 3455689999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccC-CcccceEEEeE
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNE-GEATAQLYTLE 114 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~w~~L~ 114 (971)
|++.++ ++++||++.|+|.++...+ .+....||+|.
T Consensus 92 ~~~~~~-~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 92 HSRTLK-RRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred eCCCCc-CcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 999876 7999999999999996543 34567999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=151.31 Aligned_cols=117 Identities=29% Similarity=0.520 Sum_probs=100.0
Q ss_pred eEEEEEEEeeeCCCCCCccC---CCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeC-CCcEEEEEEEeCCC
Q 046822 598 GVLEMGILGATGLMPMKFKE---GKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFD-PCTVITVGVFDNCS 673 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~---~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~-~~~~l~i~V~D~~~ 673 (971)
|.|+|+|++|+||+.++... ..|.+ ||||+++++++.++|++++++.||.|||.|.|.+.+ ....|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~-dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKS-DPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCc-CCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence 68999999999999865311 13678 999999999999999999999999999999999986 45699999999984
Q ss_pred CCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 674 LDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 674 ~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
. +|++||++.++|+++..+.....||+|... ..|+|+++++|
T Consensus 80 ~----------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 80 D----------KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred C----------CCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 3 789999999999999877777899999732 34999998864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=151.77 Aligned_cols=124 Identities=23% Similarity=0.349 Sum_probs=105.6
Q ss_pred CCceEEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECCeEEEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEE
Q 046822 424 SPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLIS 503 (971)
Q Consensus 424 ~p~l~~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~ 503 (971)
.+.++.|+|+|++|++|...|.. +.+||||++.++++.+||+++ +++.||.|||.|.|.+.++..+.|.|+
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~----g~~DPYv~v~~~~~~~kT~vi-----~~t~nP~Wne~f~f~v~~~~~~~l~i~ 81 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSN----GKSDPYCEVSMGSQEHKTKVV-----SDTLNPKWNSSMQFFVKDLEQDVLCIT 81 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCC----CCcCcEEEEEECCEeeecccc-----CCCCCCccCceEEEEecCccCCEEEEE
Confidence 34567999999999999999887 899999999999999999999 899999999999999988878899999
Q ss_pred EEeCcCCCCCceeEEEEEecccccccc-ccccccceeEEcccCCCCCCCcceeeeeeeeeEEEEEc
Q 046822 504 VEDHVGPGKDEIVGKVLIPVSAVERRT-DDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSL 568 (971)
Q Consensus 504 V~d~d~~~~d~~iG~~~i~L~~l~~~~-~~~~~~~~w~~L~~~~~~~~~~~~~~~~~g~i~l~l~l 568 (971)
|||++..++|++||++.++|.++.... ..+....+|..+.+.. .|+|++.+.+
T Consensus 82 V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~------------~g~i~l~~~~ 135 (136)
T cd08375 82 VFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVP------------TGEVVVKLDL 135 (136)
T ss_pred EEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecccccc------------ceeEEEEEEe
Confidence 999998888999999999999987632 2223345677775544 6889988865
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-16 Score=148.47 Aligned_cols=115 Identities=25% Similarity=0.359 Sum_probs=101.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECCeEEEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEEEEeCc
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHV 508 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d~d 508 (971)
+++|+|++|+||+..+.. +.+||||+++++++.+||+++ .++.||.|||.|.|.+.++..+.|.|+|||++
T Consensus 1 ~~~V~v~~a~~L~~~~~~----~~~dPyv~v~~~~~~~kT~v~-----~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~ 71 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDN----GLSDPYVKFRLGNEKYKSKVC-----SKTLNPQWLEQFDLHLFDDQSQILEIEVWDKD 71 (116)
T ss_pred CEEEEEEEEECCCCCCCC----CCCCcEEEEEECCEeEecccc-----cCCCCCceeEEEEEEecCCCCCEEEEEEEECC
Confidence 378999999999999887 799999999999999999999 89999999999999998877789999999999
Q ss_pred CCCCCceeEEEEEeccccccccccccccceeEEcccCCCCCCCcceeeeeeeeeEEEEEcc
Q 046822 509 GPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLD 569 (971)
Q Consensus 509 ~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~g~i~l~l~l~ 569 (971)
..+++++||++.++|+++... .....||+|+... |++++++.+.
T Consensus 72 ~~~~~~~iG~~~~~l~~l~~~----~~~~~w~~L~~~~-------------G~~~~~~~~~ 115 (116)
T cd08376 72 TGKKDEFIGRCEIDLSALPRE----QTHSLELELEDGE-------------GSLLLLLTLT 115 (116)
T ss_pred CCCCCCeEEEEEEeHHHCCCC----CceEEEEEccCCC-------------cEEEEEEEec
Confidence 888999999999999998754 2468999998653 7888877653
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.70 E-value=6e-17 Score=153.16 Aligned_cols=107 Identities=28% Similarity=0.444 Sum_probs=91.4
Q ss_pred CCeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDGE-GSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVF 77 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~-g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~ 77 (971)
..+.|.|+|++|+||++++.. |.+||||++.+.. .+++|+++++++||.|||+|.|.+.. +++....|.|.||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~-~~l~~~~L~~~V~ 91 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVER-EELPTRVLNLSVW 91 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCH-HHhCCCEEEEEEE
Confidence 357899999999999999975 8999999999962 35899999999999999999999864 3455679999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
|++.++ ++++||++.|+|.++... .....||+|+
T Consensus 92 d~~~~~-~~~~iG~~~i~L~~~~~~--~~~~~W~~L~ 125 (125)
T cd08393 92 HRDSLG-RNSFLGEVEVDLGSWDWS--NTQPTWYPLQ 125 (125)
T ss_pred eCCCCC-CCcEeEEEEEecCccccC--CCCcceEECc
Confidence 999976 799999999999999643 3345899984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-16 Score=149.42 Aligned_cols=106 Identities=18% Similarity=0.222 Sum_probs=90.6
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-----CEEEeeecccCCCCCeecceeEEEeeC---CCcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-----QKWVRTRTVVDSLSPKWNEQYTWEVFD---PCTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-----~~~~rT~~~~~~~nP~Wne~~~~~v~~---~~~~l~i 666 (971)
+..|.|.|+|++|+||++.+. ..|.+ ||||++.+. ....||+++++++||.|||.|.|++.. ....|.|
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~--~~~~~-DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~ 88 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDE--AKKRS-NPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQL 88 (125)
T ss_pred CCCCeEEEEEEEecCCCccCC--CCCCC-CcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 456889999999999987642 25778 999999983 235799999999999999999999874 3458999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
+|||++.++ ++++||++.|+|.++......+.||||.
T Consensus 89 ~V~d~~~~~---------~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 89 SVWHYDRFG---------RNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EEEECCCCC---------CCcEEEEEEEeCCcccccCCcccEEECc
Confidence 999999765 8999999999999998888889999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-16 Score=144.28 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=85.3
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC----EEEeeecccCCCCCeecceeEEEeeC---CCcEEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ----KWVRTRTVVDSLSPKWNEQYTWEVFD---PCTVITVG 667 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~----~~~rT~~~~~~~nP~Wne~~~~~v~~---~~~~l~i~ 667 (971)
+..|.|.|+|++|+||+ . .|.+ ||||++.+.. .+.+|+++++|+||.|||.|.|+|.. +...|.|+
T Consensus 11 ~~~~~L~V~vikA~~L~-~-----~g~s-DPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~ 83 (118)
T cd08677 11 KQKAELHVNILEAENIS-V-----DAGC-ECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLT 83 (118)
T ss_pred CcCCEEEEEEEEecCCC-C-----CCCC-CeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEE
Confidence 55689999999999998 2 3568 9999999853 46899999999999999999999874 34489999
Q ss_pred EEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEec
Q 046822 668 VFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPL 711 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 711 (971)
|||+|+++ ++++||++.++++++..+....+|..|
T Consensus 84 V~d~Drfs---------~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 84 LRCCDRFS---------RHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEeCCCCC---------CCceEEEEEEccccccCCccccchhcC
Confidence 99999887 999999999999987555555677654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=150.31 Aligned_cols=107 Identities=23% Similarity=0.386 Sum_probs=91.2
Q ss_pred CCeEEEEEEEEeeCCCCCCC-CCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDG-EGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVF 77 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~-~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~ 77 (971)
..+.|.|+|++|+||++++. .|.+||||++.+.. .+++|+++++++||.|||+|.|.+... ++....|.|.||
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~-~l~~~~L~~~V~ 91 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHS-QLETRTLQLSVW 91 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHH-HhCCCEEEEEEE
Confidence 56889999999999998875 57999999999962 368999999999999999999998643 355578999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
|++.++ ++++||++.|++.++... .....||+|+
T Consensus 92 d~~~~~-~~~~lG~~~i~l~~~~~~--~~~~~w~~l~ 125 (125)
T cd04029 92 HYDRFG-RNTFLGEVEIPLDSWNFD--SQHEECLPLH 125 (125)
T ss_pred ECCCCC-CCcEEEEEEEeCCccccc--CCcccEEECc
Confidence 999987 799999999999999654 2345899984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.9e-17 Score=150.18 Aligned_cols=107 Identities=21% Similarity=0.310 Sum_probs=92.9
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC------eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK------QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVF 77 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~ 77 (971)
..+.|.|+|++|+||++.+..|.+||||++.+.. .+++|+++++++||+|||+|.|.+. .+++....|.|.||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~-~~~L~~~~L~~~V~ 90 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPIS-STKLYQKTLQVDVC 90 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECC-HHHhhcCEEEEEEE
Confidence 4678999999999999998889999999999862 3789999999999999999999976 45677899999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccCCcccceEEEe
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTL 113 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L 113 (971)
|+++++ ++++||++.|+|+++...+. ....||+|
T Consensus 91 ~~~~~~-~~~~lG~~~i~L~~~~~~~~-~~~~Wy~l 124 (124)
T cd08680 91 SVGPDQ-QEECLGGAQISLADFESSEE-MSTKWYNL 124 (124)
T ss_pred eCCCCC-ceeEEEEEEEEhhhccCCCc-cccccccC
Confidence 999876 79999999999999955433 34579976
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-16 Score=153.48 Aligned_cols=120 Identities=24% Similarity=0.359 Sum_probs=100.3
Q ss_pred CeEEEEEEEEeeCCCCCC------------------------------CCCCCCcEEEEEEcCeE-EEeecccCCCCCee
Q 046822 5 KEKLVVEVIAAHNLMPKD------------------------------GEGSSSPFVEVEFEKQI-LRTQVKYKDLNPIW 53 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d------------------------------~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~w 53 (971)
-|.|.|+|.+|++|+.+| ..|.+||||+|.+++.+ .||++++++.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 378999999999999987 35679999999999764 79999999999999
Q ss_pred eeeeEEecCCCCCCCcceEEEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCC-eeeeEEEEEEEe
Q 046822 54 NEKLVFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFS-HIRGEISLKLFV 132 (971)
Q Consensus 54 ne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~ 132 (971)
||+|.|.+.... +.|.|.|||++.++ +++||++.++++++.. +.....||+|.+...+. +..|.|++++.|
T Consensus 86 nE~F~~~~~~~~----~~l~~~V~d~d~~~--~~~IG~~~i~l~~l~~--g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHYA----SHVEFTVKDNDVVG--AQLIGRAYIPVEDLLS--GEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCCC----CEEEEEEEeCCCcC--CcEEEEEEEEhHHccC--CCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 999999987654 68999999999874 6899999999999864 33446899998753332 345899999877
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=147.57 Aligned_cols=113 Identities=22% Similarity=0.324 Sum_probs=96.6
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC---CEEEeeecccCCCCCeecceeEEEeeCC-CcEEEEEEEeCCCCC
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---QKWVRTRTVVDSLSPKWNEQYTWEVFDP-CTVITVGVFDNCSLD 675 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g---~~~~rT~~~~~~~nP~Wne~~~~~v~~~-~~~l~i~V~D~~~~~ 675 (971)
|.|+|++|++|+..+ ..|++ ||||++.++ ....||+++.++.||.|||.|.|.+... ...|.|+|||++.+
T Consensus 2 L~V~vi~a~~L~~~~---~~~~~-Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~- 76 (119)
T cd04036 2 LTVRVLRATNITKGD---LLSTP-DCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV- 76 (119)
T ss_pred eEEEEEEeeCCCccC---CCCCC-CcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-
Confidence 789999999998764 36788 999999985 3578999999999999999999999764 44899999999843
Q ss_pred ccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 676 KNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 676 ~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
+|++||++.++|+++..+.....||+|... +.|+|++++.+.
T Consensus 77 ---------~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~------~~g~l~~~~~~~ 118 (119)
T cd04036 77 ---------MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQ------GKEELEVEFLLE 118 (119)
T ss_pred ---------CCcccEEEEEEHHHCCCCCcEEEEEECCCC------CCceEEEEEEee
Confidence 689999999999999988888999999632 248998888753
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-16 Score=149.86 Aligned_cols=124 Identities=26% Similarity=0.433 Sum_probs=101.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCC----CCC--CcceEEEEEEeCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDI----AEL--PYKHIEVNVFNER 80 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~----~~l--~~~~L~i~V~d~~ 80 (971)
.|+|+|++|++|+.+|..|.+||||+|.++++.++|+++++|+||.|||+|.|.+... +.+ ....|.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 6899999999999999999999999999999999999999999999999999985321 111 1257999999999
Q ss_pred CCCCCCceeEEEEE-eCcccccc-CCcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 81 RSSNSRNFLGKVRA-PCSQLCKN-EGEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 81 ~~~~~d~~lG~~~i-~l~~l~~~-~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
..+ +|++||++.+ ++..+... ......+||+|.+.+ ..+|+|++++.+..
T Consensus 82 ~~~-~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~---~~~Geil~~~~~~~ 133 (135)
T cd04017 82 SVG-KDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG---QSAGELLAAFELIE 133 (135)
T ss_pred CCC-CCccceEEEeeeeeecccCCCCCCCceEEEeecCC---CchhheeEEeEEEE
Confidence 976 7899999997 55555322 234456999998554 46899999999865
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.6e-16 Score=148.49 Aligned_cols=119 Identities=20% Similarity=0.377 Sum_probs=101.4
Q ss_pred CCCeEEEEEEEEeeCCCCCCCC----------CCCCcEEEEEEcCeE-EEeecccCCCCCeeeeeeEEecCCCCCCCcce
Q 046822 3 DGKEKLVVEVIAAHNLMPKDGE----------GSSSPFVEVEFEKQI-LRTQVKYKDLNPIWNEKLVFDVPDIAELPYKH 71 (971)
Q Consensus 3 ~~~~~L~V~V~~a~~L~~~d~~----------g~~dPyv~v~~~~~~-~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~ 71 (971)
|-.|.|+|+|++|++|...+.. |.+||||++.++++. .+|++++++.||.|||+|.|.+.. . ..
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~----~~ 75 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-G----RN 75 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-C----CE
Confidence 3468999999999999988852 689999999999865 799999999999999999999863 2 68
Q ss_pred EEEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 72 IEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 72 L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
|.|.|||++.++ ++++||++.++|+++...+......||+|++ +|.|++++.+..
T Consensus 76 l~~~v~d~~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-------~G~l~l~~~~~~ 130 (132)
T cd04014 76 LELTVFHDAAIG-PDDFVANCTISFEDLIQRGSGSFDLWVDLEP-------QGKLHVKIELKG 130 (132)
T ss_pred EEEEEEeCCCCC-CCceEEEEEEEhHHhcccCCCcccEEEEccC-------CcEEEEEEEEec
Confidence 999999998876 7899999999999987643444578999972 599999998864
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-16 Score=149.62 Aligned_cols=111 Identities=22% Similarity=0.331 Sum_probs=91.9
Q ss_pred CCeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEc---CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGE-GSSSPFVEVEFE---KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~-g~~dPyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
..+.|.|+|++|+||+.++.. |.+||||++.+. .+++||+++++++||.|||+|.|......++....|.|.|||+
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~ 93 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF 93 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence 467899999999999998876 899999999996 3467999999999999999999953333344456899999999
Q ss_pred CCCCCCCceeEEEEEeCccccccCCcccceEEEeEe
Q 046822 80 RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEK 115 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~ 115 (971)
+.++ ++++||++.|+|+++...++....-|.+|++
T Consensus 94 d~~~-~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 94 DRYS-RDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred CCCC-CCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 9986 7999999999999996553333557888863
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-16 Score=148.58 Aligned_cols=120 Identities=30% Similarity=0.408 Sum_probs=99.2
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC--EEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCC
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ--KWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSL 674 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~--~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~ 674 (971)
+|.|+|+|++|+||+..+. ..|.+ ||||++++++ ..+||+++.++.||.|||.|.|.+......|.|+|||++..
T Consensus 1 ~g~l~v~v~~a~~L~~~~~--~~~~~-dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~ 77 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDI--IGGTV-DPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDK 77 (124)
T ss_pred CeEEEEEEEcccCCCcccc--cCCCC-CCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCC
Confidence 5899999999999985432 24567 9999999987 78999999999999999999999987677999999999865
Q ss_pred CccccCCCCCCCceeEEEEEEcccccCCceEee-eEeceecCCCCcccceEEEEEEEEe
Q 046822 675 DKNIINNSGGRDSRIGKVRIRLSTLESDRVYTH-SYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 675 ~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~-~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
+ +|++||++.++|.++..+..... ++++. ..| +..|+|++.++|.
T Consensus 78 ~---------~d~~iG~~~~~l~~l~~~~~~~~~~~~~~---~~~-k~~G~i~~~l~~~ 123 (124)
T cd04044 78 R---------KDKLIGTAEFDLSSLLQNPEQENLTKNLL---RNG-KPVGELNYDLRFF 123 (124)
T ss_pred C---------CCceeEEEEEEHHHhccCccccCcchhhh---cCC-ccceEEEEEEEeC
Confidence 4 89999999999999987665543 34443 223 3469999999884
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-16 Score=148.12 Aligned_cols=115 Identities=30% Similarity=0.478 Sum_probs=98.8
Q ss_pred eEEEEEEEEeeCCCCCCC------CCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 6 EKLVVEVIAAHNLMPKDG------EGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~------~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
|.|.|+|++|+||+.++. .|.+||||++.++++.++|++++++.||.|||+|.|.+.... ...|.|+|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~---~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVP---GQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCC---CCEEEEEEEec
Confidence 579999999999998875 368999999999999999999999999999999999987543 37999999999
Q ss_pred CCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 80 RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
+.. ++++||++.+++.++... .....||+|++. .+|+|++.+.|
T Consensus 78 ~~~--~~~~iG~~~i~l~~l~~~--~~~~~w~~L~~~-----~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD--KDDFLGRLSIDLGSVEKK--GFIDEWLPLEDV-----KSGRLHLKLEW 121 (121)
T ss_pred CCC--CCCcEEEEEEEHHHhccc--CccceEEECcCC-----CCceEEEEEeC
Confidence 986 689999999999998753 234699999753 35999988764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-16 Score=144.11 Aligned_cols=96 Identities=23% Similarity=0.323 Sum_probs=83.2
Q ss_pred eEEEEEEEeeeCCCCCCccC-CCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCC--CcEEEEEEEeCCCC
Q 046822 598 GVLEMGILGATGLMPMKFKE-GKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDP--CTVITVGVFDNCSL 674 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~-~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~--~~~l~i~V~D~~~~ 674 (971)
|+|.|+|++|+||++.+... ..+.+ ||||++.++++.+||+++++++||+|||.|.|++.+. ...|.|+|||+|.+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~-DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~ 79 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDM-DPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKF 79 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCcc-CceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCC
Confidence 78999999999999876422 12457 9999999999999999999999999999999999753 34899999999977
Q ss_pred CccccCCCCCCCceeEEEEEEcccccCCc
Q 046822 675 DKNIINNSGGRDSRIGKVRIRLSTLESDR 703 (971)
Q Consensus 675 ~~~~~~~~~~~d~~iG~~~i~l~~l~~~~ 703 (971)
+ +|++||++.++|++|..+.
T Consensus 80 ~---------~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 80 S---------FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred C---------CCcceEEEEEEHHHHHhhC
Confidence 5 8999999999999997654
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-16 Score=148.22 Aligned_cols=105 Identities=24% Similarity=0.351 Sum_probs=88.9
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-----CEEEeeecccCCCCCeecceeEEEeeC---CCcEEEEE
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-----QKWVRTRTVVDSLSPKWNEQYTWEVFD---PCTVITVG 667 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-----~~~~rT~~~~~~~nP~Wne~~~~~v~~---~~~~l~i~ 667 (971)
..+.|.|+|++|+||++++. ..|.+ ||||++.+. ....||+++++++||.|||.|.|++.. ....|.|+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~--~~g~~-dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~ 89 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADP--KKQRS-DPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLS 89 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCC--CCCCC-CcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 34789999999999998753 13778 999999983 234799999999999999999999863 23489999
Q ss_pred EEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 668 VFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
|||++.++ ++++||++.|+|.++..+.....||+|.
T Consensus 90 V~d~~~~~---------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 90 VWHRDSLG---------RNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EEeCCCCC---------CCcEeEEEEEecCccccCCCCcceEECc
Confidence 99999765 8999999999999997777678999973
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-16 Score=150.09 Aligned_cols=106 Identities=29% Similarity=0.422 Sum_probs=89.3
Q ss_pred CeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEE-
Q 046822 5 KEKLVVEVIAAHNLMPKD-GEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVF- 77 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~- 77 (971)
.+.|.|+|++|+||++++ ..|.+||||++.+.. .+++|+++++|+||+|||+|.|.+.. ....|.|+||
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l----~~~~L~v~V~~ 103 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSP----TGKTLQVIVWG 103 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcC----CCCEEEEEEEe
Confidence 578999999999999875 578899999999963 27899999999999999999999872 3489999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
|++++. +++|||++.|+|+.+.... ....||+|.+..
T Consensus 104 d~~~~~-~~~~iG~~~i~L~~l~~~~--~~~~Wy~L~~~~ 140 (146)
T cd04028 104 DYGRMD-KKVFMGVAQILLDDLDLSN--LVIGWYKLFPTS 140 (146)
T ss_pred CCCCCC-CCceEEEEEEEcccccCCC--CceeEEecCCcc
Confidence 577765 7999999999999985322 335899998764
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-16 Score=149.95 Aligned_cols=104 Identities=23% Similarity=0.344 Sum_probs=89.6
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE--CC---EEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEE-eC
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY--GQ---KWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVF-DN 671 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~--g~---~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~-D~ 671 (971)
|.|.|+|++|+||++.+ +..|.+ ||||++.+ ++ .+.||+++++++||+|||.|.|++......|.|+|| |+
T Consensus 29 ~~L~V~Vi~ArnL~~~~--~~~g~s-DPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~ 105 (146)
T cd04028 29 GQLEVEVIRARGLVQKP--GSKVLP-APYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDY 105 (146)
T ss_pred CEEEEEEEEeeCCCccc--CCCCCc-CCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCC
Confidence 68999999999998753 235788 99999999 33 368999999999999999999999966669999999 56
Q ss_pred CCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 672 CSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 672 ~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
+.+. ++++||.+.|+|+++..+.....||+|..
T Consensus 106 ~~~~---------~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~ 138 (146)
T cd04028 106 GRMD---------KKVFMGVAQILLDDLDLSNLVIGWYKLFP 138 (146)
T ss_pred CCCC---------CCceEEEEEEEcccccCCCCceeEEecCC
Confidence 6554 89999999999999987777789999985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.1e-16 Score=146.91 Aligned_cols=124 Identities=25% Similarity=0.397 Sum_probs=98.1
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCccc
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNI 678 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~~ 678 (971)
.|+|+|++|++|+..+ ..|.+ ||||++.++++..+|+++.+++||.|||.|.|.+..+...|.|+|||+|......
T Consensus 2 ~L~V~vi~a~~L~~~d---~~g~~-DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKD---KTGTS-DPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCC---CCCCc-CcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccc
Confidence 6899999999999764 47888 9999999999999999999999999999999999877779999999998421000
Q ss_pred --cCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEE
Q 046822 679 --INNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAV 729 (971)
Q Consensus 679 --~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 729 (971)
..-..++|++||.+.+++.++.... ..||+|......+ +..|+|.|++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~~--~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGEM--DVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCCC--CeEEECccCCCCC-cEeEEEEEEC
Confidence 0001147999999999999986443 7899998544322 2369998864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-16 Score=147.75 Aligned_cols=100 Identities=25% Similarity=0.348 Sum_probs=87.6
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-----CEEEeeecccCCCCCeecceeEEEee---C-CCcEEEEEE
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-----QKWVRTRTVVDSLSPKWNEQYTWEVF---D-PCTVITVGV 668 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-----~~~~rT~~~~~~~nP~Wne~~~~~v~---~-~~~~l~i~V 668 (971)
|.|.|+|++|+||++++ .|.+ ||||++.+. ..+.||++++++.||.|||+|.|++. + ....|.|+|
T Consensus 13 ~~L~V~Vi~A~~L~~~~----~~~~-DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V 87 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD----GSDP-DPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSV 87 (122)
T ss_pred CEEEEEEEEeeCCCCCC----CCCC-CCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEE
Confidence 68999999999999864 5788 999999995 34689999999999999999999973 2 345899999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEec
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPL 711 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 711 (971)
||++.++ ++++||++.|+|+++..+.....||+|
T Consensus 88 ~d~d~~~---------~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 88 WSHDSLV---------ENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred EeCCCCc---------CCcEEEEEEEeccccccCCCccceEEC
Confidence 9999775 899999999999999887777899987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-16 Score=145.82 Aligned_cols=106 Identities=28% Similarity=0.439 Sum_probs=92.2
Q ss_pred EEEEEEEeeCCCCCCC-CCCCCcEEEEEEcCeEEEeecccCCCCCee-eeeeEEecCCCCCCCcceEEEEEEeCCCCCCC
Q 046822 8 LVVEVIAAHNLMPKDG-EGSSSPFVEVEFEKQILRTQVKYKDLNPIW-NEKLVFDVPDIAELPYKHIEVNVFNERRSSNS 85 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~-~g~~dPyv~v~~~~~~~~T~~~~~t~nP~w-ne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~ 85 (971)
|.|+|++|+||+.++. .|.+||||++.++++.++|+++++++||.| ||+|.|.+.... +....|.|+|||++.++ +
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~-l~~~~l~i~V~d~d~~~-~ 78 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE-LQDEPLQIRVMDHDTYS-A 78 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHH-cCCCeEEEEEEeCCCCC-C
Confidence 6899999999999884 789999999999999999999999999999 999999987542 34578999999999986 7
Q ss_pred CceeEEEEEeCccccccC-CcccceEEEeEe
Q 046822 86 RNFLGKVRAPCSQLCKNE-GEATAQLYTLEK 115 (971)
Q Consensus 86 d~~lG~~~i~l~~l~~~~-~~~~~~w~~L~~ 115 (971)
+++||++.+++.++...+ ......||+|..
T Consensus 79 ~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 79 NDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 899999999999997642 344678999864
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.9e-16 Score=144.64 Aligned_cols=107 Identities=25% Similarity=0.347 Sum_probs=92.1
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCC-CCCcceEEEEEEeCCCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIA-ELPYKHIEVNVFNERRS 82 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~-~l~~~~L~i~V~d~~~~ 82 (971)
....|+|+|++|++|. .|.+||||++++++++++|++++++.||.|||+|.|.+..+. ++....|.|+|||++.+
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 3578999999999998 578999999999999999999999999999999999975433 34457899999999998
Q ss_pred CCCCceeEEEEEeCcccccc-CCcccceEEEeEe
Q 046822 83 SNSRNFLGKVRAPCSQLCKN-EGEATAQLYTLEK 115 (971)
Q Consensus 83 ~~~d~~lG~~~i~l~~l~~~-~~~~~~~w~~L~~ 115 (971)
+ +|++||++.++++++... .......||+|..
T Consensus 78 ~-~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 R-SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred c-cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 7 699999999999999654 3355679999974
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-15 Score=145.64 Aligned_cols=118 Identities=26% Similarity=0.467 Sum_probs=99.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-------------eEEEeecccCCCCCee-eeeeEEecCCCCCCCcceE
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-------------QILRTQVKYKDLNPIW-NEKLVFDVPDIAELPYKHI 72 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-------------~~~~T~~~~~t~nP~w-ne~f~f~v~~~~~l~~~~L 72 (971)
.+.|++++|+||+ ++..|.+||||++.+.+ +.++|+++++++||+| ||+|.|.+.. . +.|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~----~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-T----DVL 75 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-C----CEE
Confidence 4679999999998 77789999999999952 4689999999999999 9999999863 2 689
Q ss_pred EEEEEeCCCCCC--CCceeEEEEEeCccccccCC-cccceEEEeEeCCCCCeeeeEEEEEE
Q 046822 73 EVNVFNERRSSN--SRNFLGKVRAPCSQLCKNEG-EATAQLYTLEKRSLFSHIRGEISLKL 130 (971)
Q Consensus 73 ~i~V~d~~~~~~--~d~~lG~~~i~l~~l~~~~~-~~~~~w~~L~~~~~~~~~~G~i~l~~ 130 (971)
.|+|||++..++ .+++||++.+++.++...+. ....+||+|++++.++.++|+|.+++
T Consensus 76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999999865432 27999999999999965432 23458999999999999999999986
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.6e-16 Score=143.71 Aligned_cols=100 Identities=18% Similarity=0.269 Sum_probs=85.9
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-C----C--EEEeeecccCCCCCeecceeEEEeeCC----CcEEEEE
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-G----Q--KWVRTRTVVDSLSPKWNEQYTWEVFDP----CTVITVG 667 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-g----~--~~~rT~~~~~~~nP~Wne~~~~~v~~~----~~~l~i~ 667 (971)
.|+|+|++|++|+..+ .|.+ ||||++.+ | . ++++|+++.+++||+|||.|.|.+... ...|.|.
T Consensus 1 kL~V~Vi~A~~L~~~d----~g~~-DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~ 75 (120)
T cd08395 1 KVTVKVVAANDLKWQT----TGMF-RPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHIC 75 (120)
T ss_pred CEEEEEEECcCCCccc----CCCC-CCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEE
Confidence 3899999999998753 4888 99999997 4 2 357899999999999999999999742 2379999
Q ss_pred EEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 668 VFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
|||+|..+ +|++||++.++|+++..+.....|++|.
T Consensus 76 V~D~d~~~---------~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 76 VKDYCFAR---------DDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred EEEecccC---------CCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 99998554 7999999999999998888888999996
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.2e-16 Score=146.10 Aligned_cols=105 Identities=21% Similarity=0.379 Sum_probs=91.3
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC---CEEEeeecccCCCCCeecceeEEEeeCC---CcEEEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---QKWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITVGV 668 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g---~~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i~V 668 (971)
+..|.|.|+|++|+||++++ ..|.+ ||||++.++ ....||++++++.||.|||.|.|++... ...|.|+|
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d---~~g~~-dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V 88 (124)
T cd08387 13 KDMGILNVKLIQARNLQPRD---FSGTA-DPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLL 88 (124)
T ss_pred CCCCEEEEEEEEeeCCCCCC---CCCCC-CCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEE
Confidence 44589999999999999764 47788 999999983 4568999999999999999999998743 45899999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
||++.++ +|++||++.|+|+++..+...+.||+|.
T Consensus 89 ~d~~~~~---------~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 89 YDFDQFS---------RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred EECCCCC---------CCceeEEEEEecccccCCCCcceEEECc
Confidence 9999765 8999999999999998777789999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=145.32 Aligned_cols=123 Identities=22% Similarity=0.412 Sum_probs=102.5
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEE-EeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCC
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKW-VRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLD 675 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~-~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~ 675 (971)
...|.|.|++|+||++++ ||||.+.+++.. .||+++.++.||.|+|.|.|....+...|+|.||+.+...
T Consensus 10 ~~sL~v~V~EAk~Lp~~~---------~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~ 80 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK---------RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEccCCCCcC---------CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc
Confidence 467999999999998742 899999999887 5999999999999999999987777789999998765221
Q ss_pred ccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCC-------cccceEEEEEEEEee
Q 046822 676 KNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSG-------VKKMGELHLAVRFSC 733 (971)
Q Consensus 676 ~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g-------~~~~G~i~l~~~f~~ 733 (971)
.+..++++||++.||+.++..+...+.||||...+... .+..++|++.++|..
T Consensus 81 -----~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 81 -----KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred -----ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 12237899999999999999988889999999765543 234589999999984
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-16 Score=146.10 Aligned_cols=105 Identities=22% Similarity=0.388 Sum_probs=88.2
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||++++ .|.+||||++.+.. .+++|+++++++||.|||+|.|.+.... + ...|.|.|||
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~-~-~~~l~v~V~~ 86 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERD-Y-QKRLLVTVWN 86 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHH-h-CCEEEEEEEC
Confidence 4678999999999999998 88999999999974 3679999999999999999999986432 2 2468899999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEe
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTL 113 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L 113 (971)
++..+.++++||++.|++.++.. + +....||.|
T Consensus 87 ~~~~~~~~~~lG~~~i~l~~~~~-~-~~~~~Wy~l 119 (119)
T cd08685 87 KLSKSRDSGLLGCMSFGVKSIVN-Q-KEISGWYYL 119 (119)
T ss_pred CCCCcCCCEEEEEEEecHHHhcc-C-ccccceEeC
Confidence 99875457999999999999973 3 334689986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-16 Score=148.17 Aligned_cols=107 Identities=27% Similarity=0.457 Sum_probs=91.0
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+.++..+.+||||+|.+.+ +.++|+++++++||.|||+|.|.+....++....|.|+|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 4688999999999999999889999999999974 57899999999999999999999755444445799999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
++.++ ++++||++.+++.+... +. ...||+|+
T Consensus 94 ~~~~~-~~~~iG~~~i~l~~~~~-~~--~~~W~~L~ 125 (125)
T cd04031 94 YDRDG-ENDFLGEVVIDLADALL-DD--EPHWYPLQ 125 (125)
T ss_pred CCCCC-CCcEeeEEEEecccccc-cC--CcceEECc
Confidence 99876 79999999999999432 22 24899985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.5e-16 Score=141.99 Aligned_cols=93 Identities=23% Similarity=0.410 Sum_probs=82.2
Q ss_pred eEEEEEEEEeeCCCCCCCC----CCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGE----GSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERR 81 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~----g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~ 81 (971)
|.|.|+|++|++|++.+.. +.+||||++.++++.++|+++++++||+|||.|.|.+..... ...|.|+|||++.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~--~~~L~~~V~D~d~ 78 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEK--NFDIQFKVLDKDK 78 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccC--CCEEEEEEEECCC
Confidence 6899999999999987642 358999999999999999999999999999999999865431 3589999999999
Q ss_pred CCCCCceeEEEEEeCccccc
Q 046822 82 SSNSRNFLGKVRAPCSQLCK 101 (971)
Q Consensus 82 ~~~~d~~lG~~~i~l~~l~~ 101 (971)
++ +|++||++.++|+++..
T Consensus 79 ~~-~dd~IG~~~l~L~~l~~ 97 (108)
T cd04039 79 FS-FNDYVATGSLSVQELLN 97 (108)
T ss_pred CC-CCcceEEEEEEHHHHHh
Confidence 87 79999999999999964
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-16 Score=145.16 Aligned_cols=103 Identities=26% Similarity=0.396 Sum_probs=87.9
Q ss_pred eEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEcC---eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGE-GSSSPFVEVEFEK---QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERR 81 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~ 81 (971)
|+|+|+|++|++|+..|.. |.+||||+|.+.+ ..++|+++++++||.|||+|.|.+...+......|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999987 8999999999853 46899999999999999999998765422234689999999999
Q ss_pred CCCCCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 82 SSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 82 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
++ +|++||++.+++.++... ..|+++.
T Consensus 81 ~~-~dd~lG~~~i~l~~l~~~-----~~~~~~~ 107 (111)
T cd04041 81 FT-ADDRLGRVEIDLKELIED-----RNWMGRR 107 (111)
T ss_pred CC-CCCcceEEEEEHHHHhcC-----CCCCccc
Confidence 86 799999999999999743 2577764
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-16 Score=143.75 Aligned_cols=102 Identities=27% Similarity=0.403 Sum_probs=89.1
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCee-cceeEEEeeCC---CcEEEEEEEeCCCCC
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKW-NEQYTWEVFDP---CTVITVGVFDNCSLD 675 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~W-ne~~~~~v~~~---~~~l~i~V~D~~~~~ 675 (971)
|.|+|++|+||+.++. ..|.+ ||||++.+++..+||+++.+++||.| ||.|.|.+... ...|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~d~--~~~~~-Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDR--SSDLT-DAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCcccc--CCCCC-CceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 6799999999998652 25778 99999999999999999999999999 99999999863 358999999999775
Q ss_pred ccccCCCCCCCceeEEEEEEcccccC---CceEeeeEecee
Q 046822 676 KNIINNSGGRDSRIGKVRIRLSTLES---DRVYTHSYPLLM 713 (971)
Q Consensus 676 ~~~~~~~~~~d~~iG~~~i~l~~l~~---~~~~~~~~~L~~ 713 (971)
+|++||++.++|.++.. +.....||+|.+
T Consensus 78 ---------~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 78 ---------ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ---------CCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 89999999999999966 445788999974
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.3e-16 Score=142.48 Aligned_cols=102 Identities=24% Similarity=0.333 Sum_probs=89.9
Q ss_pred ceeEEEEEEEEeecCCCCCCCCeEEEEEECCeeeeeeeecCC-CCccccEEEEeccCC----CcceEEEEEecC---CCC
Q 046822 270 QMQYLYVRVVKARDISLFGGGEIVAEVKLGNYRGITKRVSSN-HLQWDQVFAFSKDCI----QSSAAEIFVKES---DKD 341 (971)
Q Consensus 270 ~~~~L~V~v~~a~~L~~~~~~dpyV~v~~~~~~~kT~~~~~~-nP~wne~f~f~~~~~----~~~~l~v~v~D~---~~d 341 (971)
+++.|+|+|++|++|+ .|.+||||+|++++++.+|++++++ ||.|||+|.|.+... .+..|.|.|||. +++
T Consensus 2 ~~~~l~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~ 80 (111)
T cd04011 2 QDFQVRVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSD 80 (111)
T ss_pred CcEEEEEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccC
Confidence 5689999999999998 7889999999999999999999999 999999999997643 346899999997 679
Q ss_pred cccEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 046822 342 DFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDR 374 (971)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 374 (971)
++||++.++|+++... +++.+.++||+|.++
T Consensus 81 ~~iG~~~i~l~~v~~~--~~~~~~~~w~~L~~~ 111 (111)
T cd04011 81 TLIGSFKLDVGTVYDQ--PDHAFLRKWLLLTDP 111 (111)
T ss_pred CccEEEEECCccccCC--CCCcceEEEEEeeCc
Confidence 9999999999999764 346788899999874
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-15 Score=145.09 Aligned_cols=118 Identities=24% Similarity=0.372 Sum_probs=99.6
Q ss_pred eeEEEEEEEeeeCCCCCCcc-------CCCCcccCcEEEEEECCEE-EeeecccCCCCCeecceeEEEeeCCCcEEEEEE
Q 046822 597 IGVLEMGILGATGLMPMKFK-------EGKGGSVDAYCVAKYGQKW-VRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGV 668 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~-------~~~g~s~dpy~~~~~g~~~-~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V 668 (971)
.|.|+|+|++|+||...+.. .+.|.+ ||||++.++++. .+|+++.+++||.|||.|.|.+. ....|.|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~-dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v 80 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLL-DPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTV 80 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCc-CcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEE
Confidence 58999999999999876541 013678 999999998765 69999999999999999999997 456899999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccC--CceEeeeEeceecCCCCcccceEEEEEEEEee
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLES--DRVYTHSYPLLMLHPSGVKKMGELHLAVRFSC 733 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 733 (971)
||++.++ +|++||++.++|+++.. +.....||+|. +.|+|++.+.+..
T Consensus 81 ~d~~~~~---------~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 81 FHDAAIG---------PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred EeCCCCC---------CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 9998665 78999999999999876 55668999995 2499999998864
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.2e-16 Score=140.90 Aligned_cols=103 Identities=23% Similarity=0.380 Sum_probs=92.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCCceEEEEEECCeEEEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEEEEeCcC
Q 046822 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVG 509 (971)
Q Consensus 430 L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d~d~ 509 (971)
|.|+|++|++|+..+.. +.+||||+++++++.+||+++ .++.||.|||.|.|.+..+..+.|.|+|||.+.
T Consensus 2 L~V~v~~A~~L~~~~~~----~~~dpyv~v~~~~~~~kT~v~-----~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~ 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKST----KEPSPYVELTVGKTTQKSKVK-----ERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT 72 (105)
T ss_pred EEEEEeeecCCCCcccC----CCCCcEEEEEECCEEEeCccc-----cCCCCCcccceEEEEeCCCCCCEEEEEEEECCC
Confidence 78999999999998876 899999999999999999999 889999999999999998888899999999864
Q ss_pred CCCCceeEEEEEeccccccccccccccceeEEcccCC
Q 046822 510 PGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHF 546 (971)
Q Consensus 510 ~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~ 546 (971)
+++||++.++|.++.... ....+.||+|++.+
T Consensus 73 ---~~~iG~~~i~l~~l~~~~--~~~~~~w~~L~~~g 104 (105)
T cd04050 73 ---GKSLGSLTLPLSELLKEP--DLTLDQPFPLDNSG 104 (105)
T ss_pred ---CCccEEEEEEHHHhhccc--cceeeeeEecCCCC
Confidence 889999999999987653 34578999998653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.5e-16 Score=148.35 Aligned_cols=101 Identities=21% Similarity=0.263 Sum_probs=86.1
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-----EEEeeecccCCCCCeecceeEEEee---------------
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-----KWVRTRTVVDSLSPKWNEQYTWEVF--------------- 658 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-----~~~rT~~~~~~~nP~Wne~~~~~v~--------------- 658 (971)
.|.|+|++|+||+. . .|.+ ||||++.+++ ...||+++++++||+|||.|.|++.
T Consensus 1 kL~V~Vi~ArnL~~--~---~g~s-DPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~ 74 (148)
T cd04010 1 KLSVRVIECSDLAL--K---NGTC-DPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEE 74 (148)
T ss_pred CEEEEEEeCcCCCC--C---CCCC-CceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcc
Confidence 37899999999986 2 5788 9999999965 5689999999999999999999995
Q ss_pred CCC-cEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCC-ceEeeeEeceec
Q 046822 659 DPC-TVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESD-RVYTHSYPLLML 714 (971)
Q Consensus 659 ~~~-~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~-~~~~~~~~L~~~ 714 (971)
+.. ..|.|.|||++.++ +|++||++.|+|..+..+ .....||+|...
T Consensus 75 ~~~~~~L~i~V~d~~~~~---------~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 75 DAEKLELRVDLWHASMGG---------GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred cccEEEEEEEEEcCCCCC---------CCceeEEEEEecccccccCCcCcceeecCCc
Confidence 112 37999999998664 899999999999999876 456899999754
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-15 Score=143.35 Aligned_cols=118 Identities=20% Similarity=0.384 Sum_probs=100.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC---eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK---QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSS 83 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~ 83 (971)
.|.|+|++|++|+..+..+.+||||++.+.+ ..++|+++++++||.|||+|.|.+.... ...|.|+|||++..+
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~---~~~L~i~v~d~d~~~ 78 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGE---PLWISATVWDRSFVG 78 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCC---CCEEEEEEEECCCCC
Confidence 6899999999999999999999999999874 3689999999999999999999987642 378999999999876
Q ss_pred CCCceeEEEEEeCccccccC-CcccceEEEeEeCCCCCeeeeEEEEEEEeeec
Q 046822 84 NSRNFLGKVRAPCSQLCKNE-GEATAQLYTLEKRSLFSHIRGEISLKLFVSTT 135 (971)
Q Consensus 84 ~~d~~lG~~~i~l~~l~~~~-~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~ 135 (971)
++++||++.++++.+.... +.....|++|.+ +|.+.+++.+...
T Consensus 79 -~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-------~g~i~l~~~~~~~ 123 (126)
T cd04043 79 -KHDLCGRASLKLDPKRFGDDGLPREIWLDLDT-------QGRLLLRVSMEGE 123 (126)
T ss_pred -CCceEEEEEEecCHHHcCCCCCCceEEEEcCC-------CCeEEEEEEEeee
Confidence 7999999999999875433 444568999964 4889888887654
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=144.81 Aligned_cols=120 Identities=23% Similarity=0.347 Sum_probs=98.7
Q ss_pred eEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEcC--eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCC
Q 046822 6 EKLVVEVIAAHNLMPKD-GEGSSSPFVEVEFEK--QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRS 82 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d-~~g~~dPyv~v~~~~--~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~ 82 (971)
|.|.|+|++|++|+..+ ..+.+||||++++++ +.++|+++.++.||.|||.|.|.+.... +.|.|+|||++..
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~----~~l~~~v~d~~~~ 77 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLT----EPLNLTVYDFNDK 77 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCC----CEEEEEEEecCCC
Confidence 68999999999999655 356799999999998 7899999999999999999999987433 7999999999987
Q ss_pred CCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 83 SNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 83 ~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
+ +|++||++.+++.++...... ...|+.|.. .++..|+|++++.|.+
T Consensus 78 ~-~d~~iG~~~~~l~~l~~~~~~-~~~~~~~~~---~~k~~G~i~~~l~~~p 124 (124)
T cd04044 78 R-KDKLIGTAEFDLSSLLQNPEQ-ENLTKNLLR---NGKPVGELNYDLRFFP 124 (124)
T ss_pred C-CCceeEEEEEEHHHhccCccc-cCcchhhhc---CCccceEEEEEEEeCC
Confidence 6 799999999999999754332 123455543 2346799999998863
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.1e-16 Score=145.54 Aligned_cols=108 Identities=31% Similarity=0.381 Sum_probs=92.0
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc---CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE---KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
..+.|.|+|++|+||++++..|.+||||++.+. .++++|+++++ +||+|||+|.|.....+++....|.|.|||++
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~ 92 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE 92 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECC
Confidence 467899999999999999988999999998774 35789999888 99999999999844345566789999999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCcccceEEEeEe
Q 046822 81 RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEK 115 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~ 115 (971)
.++ ++++||++.|+|+++.. +.....||+|++
T Consensus 93 ~~~-~~~~lG~~~i~L~~l~~--~~~~~~w~~L~p 124 (124)
T cd08389 93 RMR-KERLIGEKVVPLSQLNL--EGETTVWLTLEP 124 (124)
T ss_pred Ccc-cCceEEEEEEeccccCC--CCCceEEEeCCC
Confidence 986 79999999999999954 234568999974
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.7e-16 Score=142.97 Aligned_cols=99 Identities=29% Similarity=0.433 Sum_probs=86.1
Q ss_pred eEEEEEEEeeeCCCCCCccCCC-CcccCcEEEEEEC---CEEEeeecccCCCCCeecceeEEEeeCC----CcEEEEEEE
Q 046822 598 GVLEMGILGATGLMPMKFKEGK-GGSVDAYCVAKYG---QKWVRTRTVVDSLSPKWNEQYTWEVFDP----CTVITVGVF 669 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~-g~s~dpy~~~~~g---~~~~rT~~~~~~~nP~Wne~~~~~v~~~----~~~l~i~V~ 669 (971)
|.|+|+|++|+||+.++. . |.+ ||||++.+. ...++|+++++++||.|||.|.|.+..+ ...|.|+||
T Consensus 1 G~L~V~v~~a~~L~~~d~---~~~~~-Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~ 76 (111)
T cd04041 1 GVLVVTIHRATDLPKADF---GTGSS-DPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLW 76 (111)
T ss_pred CEEEEEEEEeeCCCcccC---CCCCC-CccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEE
Confidence 789999999999998754 5 788 999999983 3568999999999999999999988753 458999999
Q ss_pred eCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 670 DNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 670 D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
|+|.++ +|++||++.+++++|... .+|+++.
T Consensus 77 d~d~~~---------~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 77 DSDRFT---------ADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred eCCCCC---------CCCcceEEEEEHHHHhcC---CCCCccc
Confidence 999775 899999999999999754 4899876
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=143.35 Aligned_cols=118 Identities=24% Similarity=0.320 Sum_probs=94.5
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-CEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCccc
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-QKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNI 678 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~~ 678 (971)
|+|+|++|++|+.++ ..|.+ ||||++.++ .+.+||+++.+++||.|||.|.|++.. ...|+|+|||++.++
T Consensus 2 l~v~v~~A~~L~~~~---~~~~~-dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~--- 73 (123)
T cd08382 2 VRLTVLCADGLAKRD---LFRLP-DPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFK--- 73 (123)
T ss_pred eEEEEEEecCCCccC---CCCCC-CcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCC---
Confidence 789999999998764 47888 999999996 678999999999999999999999975 679999999998764
Q ss_pred cCCCCCCCceeEEEEEEcccccCCce-EeeeEeceecCCCC-cccceEEEEEE
Q 046822 679 INNSGGRDSRIGKVRIRLSTLESDRV-YTHSYPLLMLHPSG-VKKMGELHLAV 729 (971)
Q Consensus 679 ~~~~~~~d~~iG~~~i~l~~l~~~~~-~~~~~~L~~~~~~g-~~~~G~i~l~~ 729 (971)
...|++||++.++++++..... ...||+|....... ....|+|.+.+
T Consensus 74 ----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 74 ----KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred ----CCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 1126899999999999864432 25699997554321 12258888765
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.2e-16 Score=145.36 Aligned_cols=107 Identities=28% Similarity=0.480 Sum_probs=92.5
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc---CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE---KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
..+.|.|+|++|+||++++..|.+||||++.+. .+.++|+++++++||.|||+|.|.+... ++....|.|+|||++
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~-~l~~~~l~i~V~d~~ 92 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQ-ELPKRTLEVLLYDFD 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHH-HhCCCEEEEEEEECC
Confidence 457899999999999999999999999999995 3478999999999999999999998743 344578999999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 81 RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
.++ ++++||++.++++++...+ ....||+|+
T Consensus 93 ~~~-~~~~iG~~~i~l~~~~~~~--~~~~W~~l~ 123 (124)
T cd08387 93 QFS-RDECIGVVELPLAEVDLSE--KLDLWRKIQ 123 (124)
T ss_pred CCC-CCceeEEEEEecccccCCC--CcceEEECc
Confidence 876 7999999999999997533 446899985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=142.57 Aligned_cols=114 Identities=25% Similarity=0.349 Sum_probs=98.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCCceEEEEEEC---CeEEEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEEEEe
Q 046822 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVG---NQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVED 506 (971)
Q Consensus 430 L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g---~~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d 506 (971)
|+|+|++|++|+..+.. +.+||||++.++ .+.+||+++ +++.||.|||.|.|.+..+..+.|.|+|||
T Consensus 2 L~V~vi~a~~L~~~~~~----~~~Dpyv~v~~~~~~~~~~kT~vv-----~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d 72 (119)
T cd04036 2 LTVRVLRATNITKGDLL----STPDCYVELWLPTASDEKKRTKTI-----KNSINPVWNETFEFRIQSQVKNVLELTVMD 72 (119)
T ss_pred eEEEEEEeeCCCccCCC----CCCCcEEEEEEcCCCCccCcccee-----cCCCCCccceEEEEEeCcccCCEEEEEEEE
Confidence 78999999999998876 799999999996 368899999 889999999999999987766789999999
Q ss_pred CcCCCCCceeEEEEEeccccccccccccccceeEEcccCCCCCCCcceeeeeeeeeEEEEEcc
Q 046822 507 HVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLD 569 (971)
Q Consensus 507 ~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~g~i~l~l~l~ 569 (971)
++.. ++++||++.++++++... .....||+|...+ +|++++++.++
T Consensus 73 ~d~~-~~~~iG~~~~~l~~l~~g----~~~~~~~~L~~~~------------~g~l~~~~~~~ 118 (119)
T cd04036 73 EDYV-MDDHLGTVLFDVSKLKLG----EKVRVTFSLNPQG------------KEELEVEFLLE 118 (119)
T ss_pred CCCC-CCcccEEEEEEHHHCCCC----CcEEEEEECCCCC------------CceEEEEEEee
Confidence 9877 899999999999998754 2458999998764 57888887653
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=143.24 Aligned_cols=105 Identities=21% Similarity=0.217 Sum_probs=87.3
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-----CEEEeeecccCCCCCeecceeEEEeeCC---CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-----QKWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-----~~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i 666 (971)
...+.|.|+|++|+||++++. ..|.+ ||||++.+. ..+.||+++.+++||+|||.|.|++... ...|.|
T Consensus 12 ~~~~~L~V~V~~a~nL~~~d~--~~g~~-dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v 88 (128)
T cd08392 12 FRTSCLEITIKACRNLAYGDE--KKKKC-HPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQV 88 (128)
T ss_pred CCCCEEEEEEEecCCCCccCC--CCCCC-CeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEE
Confidence 345799999999999998643 13788 999999983 2367999999999999999999998642 459999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCC---ceEeeeEec
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESD---RVYTHSYPL 711 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~---~~~~~~~~L 711 (971)
.|||.+.++ ++++||++.|+|+++... ....+||+|
T Consensus 89 ~V~~~~~~~---------~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 89 SVWHSRTLK---------RRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEEeCCCCc---------CcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 999999765 899999999999998543 356789997
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=144.48 Aligned_cols=107 Identities=34% Similarity=0.513 Sum_probs=92.0
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC---eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK---QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
..+.|.|+|++|+||+.++..|.+||||++.+.+ ..++|+++++++||.|||+|.|.+... ++....|.|+|||++
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~-~l~~~~l~~~V~d~d 92 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYS-ELGNKTLVFSVYDFD 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHH-HhCCCEEEEEEEeCC
Confidence 4678999999999999999889999999999863 467999999999999999999998642 334578999999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 81 RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
.++ ++++||++.++++++.. +....+|++|+
T Consensus 93 ~~~-~~~~lG~~~i~l~~~~~--~~~~~~W~~l~ 123 (124)
T cd08385 93 RFS-KHDLIGEVRVPLLTVDL--GHVTEEWRDLE 123 (124)
T ss_pred CCC-CCceeEEEEEecCcccC--CCCcceEEEcc
Confidence 986 78999999999999854 33446899986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-15 Score=142.26 Aligned_cols=105 Identities=27% Similarity=0.336 Sum_probs=90.5
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC---CEEEeeecccCCCCCeecceeEEEeeCC---CcEEEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---QKWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITVGV 668 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g---~~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i~V 668 (971)
...|.|.|+|++|+||+..+ ..|.+ ||||++.+. .+.+||++++++.||.|||.|.|.+... ...|.|+|
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d---~~~~~-dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V 88 (124)
T cd08385 13 FQSNQLTVGIIQAADLPAMD---MGGTS-DPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSV 88 (124)
T ss_pred CCCCEEEEEEEEeeCCCCcc---CCCCC-CCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEE
Confidence 34578999999999999765 36788 999999984 3468999999999999999999998742 35899999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
||++.++ +|++||++.++|+++..+...++|++|.
T Consensus 89 ~d~d~~~---------~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 89 YDFDRFS---------KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred EeCCCCC---------CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9999775 8899999999999998777778999885
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=144.36 Aligned_cols=108 Identities=30% Similarity=0.445 Sum_probs=91.9
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc---CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE---KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
..+.|.|+|++|+||+.++..+.+||||++.+. ++.++|++++++.||.|||+|.|.+...+.+....|.|+|||++
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d 93 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence 467899999999999999988999999999994 46789999999999999999999854333344578999999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 81 RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
.++ ++++||++.++++++.. ......|+.|.
T Consensus 94 ~~~-~~~~iG~~~i~l~~l~~--~~~~~~W~~l~ 124 (125)
T cd08386 94 RFS-RNDPIGEVSLPLNKVDL--TEEQTFWKDLK 124 (125)
T ss_pred CCc-CCcEeeEEEEecccccC--CCCcceEEecC
Confidence 876 78999999999999864 23345899986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=144.88 Aligned_cols=119 Identities=24% Similarity=0.359 Sum_probs=99.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-eEEEeeccc-CCCCCeeeeeeEEecCCCC-CCCcceEEEEEEeCCCCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-QILRTQVKY-KDLNPIWNEKLVFDVPDIA-ELPYKHIEVNVFNERRSS 83 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~-~t~nP~wne~f~f~v~~~~-~l~~~~L~i~V~d~~~~~ 83 (971)
+|+|+|++|++|+..+..+.+||||+|++++ +.++|++.. ++.||.|||.|.|.+.... ......|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999998889999999999998 889999975 5899999999999987652 012378999999999876
Q ss_pred CCCceeEEEEEeCccccccCCc---ccceEEEeEeCCCCCeeeeEEEE
Q 046822 84 NSRNFLGKVRAPCSQLCKNEGE---ATAQLYTLEKRSLFSHIRGEISL 128 (971)
Q Consensus 84 ~~d~~lG~~~i~l~~l~~~~~~---~~~~w~~L~~~~~~~~~~G~i~l 128 (971)
+|++||++.+++.++...... ....||+|..++ ++.+|.|.+
T Consensus 81 -~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g~~~G~~~~ 125 (125)
T cd04051 81 -GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--GKPQGVLNF 125 (125)
T ss_pred -CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--CCcCeEEeC
Confidence 799999999999999754432 346899999765 467898864
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.4e-15 Score=141.34 Aligned_cols=118 Identities=19% Similarity=0.277 Sum_probs=99.4
Q ss_pred EEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCCceeEE
Q 046822 12 VIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGK 91 (971)
Q Consensus 12 V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d~~lG~ 91 (971)
|++|++|+. ..|.+||||++.++++.++|++++++.||+|||+|.|.+.... .....|.|+|||++..+ +|++||+
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~-~~~~~l~~~v~d~~~~~-~d~~iG~ 77 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSP-DPDESLEIVVKDYEKVG-RNRLIGS 77 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCc-CCCCEEEEEEEECCCCC-CCceEEE
Confidence 789999998 5789999999999999999999999999999999999987542 23589999999999876 7899999
Q ss_pred EEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeecc
Q 046822 92 VRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTTE 136 (971)
Q Consensus 92 ~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 136 (971)
+.++++++... .....|++|.+.... ...|+|.+.+.|.+..
T Consensus 78 ~~~~l~~l~~~--~~~~~~~~L~~~~~~-~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 78 ATVSLQDLVSE--GLLEVTEPLLDSNGR-PTGATISLEVSYQPPD 119 (127)
T ss_pred EEEEhhHcccC--CceEEEEeCcCCCCC-cccEEEEEEEEEeCCC
Confidence 99999999753 334579999865442 4579999999987543
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.2e-15 Score=140.80 Aligned_cols=113 Identities=22% Similarity=0.341 Sum_probs=97.5
Q ss_pred EEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCC---CcEEEEEEEeCCCCCccccC
Q 046822 604 ILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITVGVFDNCSLDKNIIN 680 (971)
Q Consensus 604 v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i~V~D~~~~~~~~~~ 680 (971)
|++|++|+. ..|++ ||||++.+++..++|++++++.||.|||.|.|++.++ ...|.|+|||++.++
T Consensus 2 vi~a~~L~~-----~~g~~-Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~----- 70 (127)
T cd08373 2 VVSLKNLPG-----LKGKG-DRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG----- 70 (127)
T ss_pred eEEeeCCcc-----cCCCC-CCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC-----
Confidence 688999986 26788 9999999999999999999999999999999999764 569999999999765
Q ss_pred CCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEee
Q 046822 681 NSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSC 733 (971)
Q Consensus 681 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 733 (971)
+|++||++.++|+++..+.....|++|...+. ....|+|++++.|..
T Consensus 71 ----~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~--~~~~~~l~l~~~~~~ 117 (127)
T cd08373 71 ----RNRLIGSATVSLQDLVSEGLLEVTEPLLDSNG--RPTGATISLEVSYQP 117 (127)
T ss_pred ----CCceEEEEEEEhhHcccCCceEEEEeCcCCCC--CcccEEEEEEEEEeC
Confidence 89999999999999988887889999975433 223599999999863
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-15 Score=145.37 Aligned_cols=107 Identities=23% Similarity=0.351 Sum_probs=90.5
Q ss_pred EEEEEEEEeeCCCCCCCCC--------------CCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceE
Q 046822 7 KLVVEVIAAHNLMPKDGEG--------------SSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHI 72 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g--------------~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L 72 (971)
.|.|+|++|++|+.+|..+ .+||||+|.+++++.+|+++++++||+|||+|.|.+..+.. ...|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~--~~~l 78 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPL--CERI 78 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCc--CCEE
Confidence 4789999999999988543 68999999999999999999999999999999999754321 3689
Q ss_pred EEEEEeCCCCCCCCceeEEEEEeCccccccCCc-----ccceEEEeEeC
Q 046822 73 EVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGE-----ATAQLYTLEKR 116 (971)
Q Consensus 73 ~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~-----~~~~w~~L~~~ 116 (971)
.|+|||++..+ +|++||++.+++.++...+.+ ....|+.|...
T Consensus 79 ~~~v~D~d~~~-~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 79 KIQIRDWDRVG-NDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred EEEEEECCCCC-CCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 99999999986 799999999999998765432 23578888754
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-15 Score=142.78 Aligned_cols=108 Identities=31% Similarity=0.442 Sum_probs=91.8
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc-----CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE-----KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+..+..+.+||||++.+. ...++|++++++.||.|||+|.|.+... .+....|.|.|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~-~l~~~~l~i~v~~ 92 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLE-ELKRRTLDVAVKN 92 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHH-HhcCCEEEEEEEE
Confidence 457899999999999999988999999999996 3578999999999999999999998643 3445799999999
Q ss_pred CCCC-CCCCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 79 ERRS-SNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 79 ~~~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
++.+ .+++++||++.+++.++... .....||+|+
T Consensus 93 ~~~~~~~~~~~iG~~~i~l~~l~~~--~~~~~W~~L~ 127 (127)
T cd04030 93 SKSFLSREKKLLGQVLIDLSDLDLS--KGFTQWYDLT 127 (127)
T ss_pred CCcccCCCCceEEEEEEeccccccc--CCccceEECc
Confidence 9875 23799999999999998543 3446899984
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-15 Score=141.46 Aligned_cols=107 Identities=21% Similarity=0.243 Sum_probs=90.1
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-----CEEEeeecccCCCCCeecceeEEEeeCC---CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-----QKWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-----~~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i 666 (971)
+..+.|.|+|++|+||+..+. .|.+ ||||++.+. ...+||++++++.||.|||.|.|.+... ...|.|
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~---~~~~-dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i 88 (127)
T cd04030 13 SQRQKLIVTVHKCRNLPPCDS---SDIP-DPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDV 88 (127)
T ss_pred CCCCEEEEEEEEEECCCCccC---CCCC-CceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEE
Confidence 345789999999999998653 6788 999999984 4578999999999999999999998642 358999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
.|||++.+. .++|++||++.|+|.++..+.....||+|.
T Consensus 89 ~v~~~~~~~-------~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 89 AVKNSKSFL-------SREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred EEEECCccc-------CCCCceEEEEEEecccccccCCccceEECc
Confidence 999998641 137999999999999998777778999883
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-15 Score=141.09 Aligned_cols=104 Identities=25% Similarity=0.308 Sum_probs=85.7
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-----EEEeeecccCCCCCeecceeEEEeeC----CCcEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-----KWVRTRTVVDSLSPKWNEQYTWEVFD----PCTVIT 665 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-----~~~rT~~~~~~~nP~Wne~~~~~v~~----~~~~l~ 665 (971)
+..|.|.|+|++|+||+.++. .|.+ ||||++.+++ ...||++++++.||.|||.|.|++.. ....|.
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~---~~~~-dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~ 88 (125)
T cd04031 13 KVTSQLIVTVLQARDLPPRDD---GSLR-NPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLE 88 (125)
T ss_pred CCCCEEEEEEEEecCCCCcCC---CCCC-CCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEE
Confidence 344789999999999998654 6778 9999999853 56899999999999999999999754 245899
Q ss_pred EEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 666 VGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 666 i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
|+|||++.++ ++++||++.++|++.... ....||+|.
T Consensus 89 ~~V~d~~~~~---------~~~~iG~~~i~l~~~~~~-~~~~W~~L~ 125 (125)
T cd04031 89 VTVWDYDRDG---------ENDFLGEVVIDLADALLD-DEPHWYPLQ 125 (125)
T ss_pred EEEEeCCCCC---------CCcEeeEEEEeccccccc-CCcceEECc
Confidence 9999999765 899999999999984222 226899983
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.5e-15 Score=139.43 Aligned_cols=101 Identities=21% Similarity=0.322 Sum_probs=85.9
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-----EEEeeecccCCCCCeecceeEEEeeC--CCcEEEEEEEe
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-----KWVRTRTVVDSLSPKWNEQYTWEVFD--PCTVITVGVFD 670 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-----~~~rT~~~~~~~nP~Wne~~~~~v~~--~~~~l~i~V~D 670 (971)
+.|.|+|++|+||++++ .|.+ ||||++.+.+ ...||+++.++.||.|||.|.|++.. ....|.|+|||
T Consensus 12 ~~L~V~Vi~ar~L~~~~----~g~~-dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~ 86 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN----SGTC-NSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWN 86 (119)
T ss_pred CEEEEEEEEEECCCCCC----CCCC-CeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEEC
Confidence 68999999999998764 5778 9999999942 35799999999999999999999864 33478999999
Q ss_pred CCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEec
Q 046822 671 NCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPL 711 (971)
Q Consensus 671 ~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 711 (971)
.+... ..+++||.+.|+|.++..+.....||+|
T Consensus 87 ~~~~~--------~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 87 KLSKS--------RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCCc--------CCCEEEEEEEecHHHhccCccccceEeC
Confidence 98543 2578999999999999877777899986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.7e-15 Score=140.84 Aligned_cols=105 Identities=25% Similarity=0.336 Sum_probs=89.7
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE---CCEEEeeecccCCCCCeecceeEEEeeC----CCcEEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY---GQKWVRTRTVVDSLSPKWNEQYTWEVFD----PCTVITVG 667 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~---g~~~~rT~~~~~~~nP~Wne~~~~~v~~----~~~~l~i~ 667 (971)
+..+.|.|+|++|+||+.++ ..|.+ ||||++.+ ++...||++++++.||.|||.|.|++.. ....|.++
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d---~~~~~-dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~ 88 (125)
T cd08386 13 FQESTLTLKILKAVELPAKD---FSGTS-DPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQ 88 (125)
T ss_pred CCCCEEEEEEEEecCCCCcc---CCCCC-CceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEE
Confidence 34578999999999998764 36788 99999998 3567899999999999999999998542 23479999
Q ss_pred EEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 668 VFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
|||++.++ ++++||++.++|+++..+.....||+|.
T Consensus 89 v~d~d~~~---------~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 89 VLDYDRFS---------RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred EEeCCCCc---------CCcEeeEEEEecccccCCCCcceEEecC
Confidence 99999765 8899999999999998887788999885
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-15 Score=148.24 Aligned_cols=109 Identities=28% Similarity=0.359 Sum_probs=92.6
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc-----CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE-----KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+.++..|.+||||++.+. .+.++|+++++++||.|||+|.|.+...+++....|.|.|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 468999999999999999989999999999984 357899999999999999999998654444555789999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEe
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEK 115 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~ 115 (971)
++.++ ++++||++.+++.++...+. ...||.|..
T Consensus 105 ~d~~~-~d~~lG~v~i~l~~~~~~~~--~~~w~~~~~ 138 (162)
T cd04020 105 HDKLS-SNDFLGGVRLGLGTGKSYGQ--AVDWMDSTG 138 (162)
T ss_pred CCCCC-CCceEEEEEEeCCccccCCC--ccccccCCh
Confidence 99986 79999999999999865432 357888754
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.2e-15 Score=140.80 Aligned_cols=90 Identities=31% Similarity=0.520 Sum_probs=83.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNS 85 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~ 85 (971)
|.|+|+|++|+||+..+. +.+||||+++++++.++|++++++.||.|||+|.|.+.++. ..|.|+|||++.++ +
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~----~~l~~~V~D~d~~~-~ 75 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPM----APLKLEVFDKDTFS-K 75 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCC----CEEEEEEEECCCCC-C
Confidence 789999999999999887 89999999999999999999999999999999999998764 79999999999987 7
Q ss_pred CceeEEEEEeCccccc
Q 046822 86 RNFLGKVRAPCSQLCK 101 (971)
Q Consensus 86 d~~lG~~~i~l~~l~~ 101 (971)
|++||++.+++.++..
T Consensus 76 dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 76 DDSMGEAEIDLEPLVE 91 (145)
T ss_pred CCEEEEEEEEHHHhhh
Confidence 9999999999999853
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.1e-15 Score=139.69 Aligned_cols=105 Identities=21% Similarity=0.306 Sum_probs=88.8
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC--C---EEEeeecccCCCCCeecceeEEEeeCC---CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG--Q---KWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g--~---~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i 666 (971)
...|.|.|+|++|+||+.++. ..|.+ ||||++.+. + ...+|+++.++.||.|||.|.|++... ...|.|
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~--~~~~~-dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i 87 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADE--KKKRS-NPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQL 87 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCC--CCCCC-CcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEE
Confidence 345789999999999998651 35778 999999983 1 458999999999999999999998752 458999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEec
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPL 711 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 711 (971)
+|||++.++ ++++||++.++|+++..+...+.||+|
T Consensus 88 ~v~d~~~~~---------~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 88 SVWHHDRFG---------RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEEeCCCCc---------CCceeeEEEEecccccccCCCccEEEC
Confidence 999999765 889999999999999776667899987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-15 Score=142.39 Aligned_cols=93 Identities=31% Similarity=0.448 Sum_probs=82.0
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+..+..|.+||||++.+.. .+++|+++++++||+|||+|.|.+.. +++....|.|.|||
T Consensus 13 ~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~-~~l~~~~l~~~V~~ 91 (136)
T cd08406 13 TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPA-IVLQDLSLRVTVAE 91 (136)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCH-HHhCCcEEEEEEEe
Confidence 3568999999999999999899999999999963 25689999999999999999999875 34667899999999
Q ss_pred CCCCCCCCceeEEEEEeCcc
Q 046822 79 ERRSSNSRNFLGKVRAPCSQ 98 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~ 98 (971)
++.++ ++++||++.+....
T Consensus 92 ~d~~~-~~~~iG~v~lg~~~ 110 (136)
T cd08406 92 STEDG-KTPNVGHVIIGPAA 110 (136)
T ss_pred CCCCC-CCCeeEEEEECCCC
Confidence 99987 79999999997654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-15 Score=142.45 Aligned_cols=93 Identities=26% Similarity=0.387 Sum_probs=81.5
Q ss_pred CCeEEEEEEEEeeCCCCCCC--CCCCCcEEEEEEcCe-----EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDG--EGSSSPFVEVEFEKQ-----ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNV 76 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~--~g~~dPyv~v~~~~~-----~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V 76 (971)
..+.|.|.|++|+||..+|. .+.+||||+|.+..+ +++|+++++++||+|||+|.|.+.. +++....|.|+|
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~-~~L~~~~L~~~V 91 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPS-ELLAASSVELEV 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCH-HHhCccEEEEEE
Confidence 46789999999999999983 356999999999742 5789999999999999999999874 456678999999
Q ss_pred EeCCCCCCCCceeEEEEEeCcc
Q 046822 77 FNERRSSNSRNFLGKVRAPCSQ 98 (971)
Q Consensus 77 ~d~~~~~~~d~~lG~~~i~l~~ 98 (971)
||++.++ ++++||++.+++..
T Consensus 92 ~d~d~~~-~~d~iG~v~lg~~~ 112 (138)
T cd08407 92 LNQDSPG-QSLPLGRCSLGLHT 112 (138)
T ss_pred EeCCCCc-CcceeceEEecCcC
Confidence 9999987 89999999999865
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-15 Score=141.21 Aligned_cols=113 Identities=26% Similarity=0.324 Sum_probs=94.3
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-EEEeeeccc-CCCCCeecceeEEEeeCC-----CcEEEEEEEeC
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-KWVRTRTVV-DSLSPKWNEQYTWEVFDP-----CTVITVGVFDN 671 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-~~~rT~~~~-~~~nP~Wne~~~~~v~~~-----~~~l~i~V~D~ 671 (971)
.|+|+|++|++|+..+. .|++ ||||++++++ +..+|+++. ++.||.|||.|.|.+.++ ...|.|+|||+
T Consensus 1 ~L~V~V~sA~~L~~~~~---~~~~-dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~ 76 (125)
T cd04051 1 TLEITIISAEDLKNVNL---FGKM-KVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCE 76 (125)
T ss_pred CEEEEEEEcccCCCCCc---ccCC-ceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEEC
Confidence 38899999999997643 6788 9999999987 889999985 589999999999999877 56999999999
Q ss_pred CCCCccccCCCCCCCceeEEEEEEcccccCCce-----EeeeEeceecCCCCcccceEEEE
Q 046822 672 CSLDKNIINNSGGRDSRIGKVRIRLSTLESDRV-----YTHSYPLLMLHPSGVKKMGELHL 727 (971)
Q Consensus 672 ~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~i~l 727 (971)
+.++ +|++||++.|+|.++..+.. ...||+|.... | +..|.|++
T Consensus 77 ~~~~---------~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g-~~~G~~~~ 125 (125)
T cd04051 77 RPSL---------GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--G-KPQGVLNF 125 (125)
T ss_pred CCCC---------CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--C-CcCeEEeC
Confidence 8664 89999999999999865443 36899998533 3 34598874
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=139.61 Aligned_cols=120 Identities=22% Similarity=0.389 Sum_probs=97.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECCeEEEeeecCCCCCCCCCCCcccceeEEEeecC---------CCCe
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEP---------FEDY 499 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~---------~~~~ 499 (971)
.|+|+|++|++|+.+|.. +.+||||++.++++..||+++ +++.||.|||.|.|.+... ....
T Consensus 2 ~l~v~V~~a~~L~~~d~~----g~~dpyv~v~~~~~~~kT~v~-----~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~ 72 (135)
T cd04017 2 QLRAYIYQARDLLAADKS----GLSDPFARVSFLNQSQETEVI-----KETLSPTWDQTLIFDEVELYGSPEEIAQNPPL 72 (135)
T ss_pred EEEEEEEEeecCcCCCCC----CCCCCEEEEEECCeeeEeeeE-----cCCCCCccCcEEEEeeeeccCChHHhhcCCCE
Confidence 589999999999999987 899999999999999999999 8999999999999975432 1247
Q ss_pred EEEEEEeCcCCCCCceeEEEEE-eccccccccccccccceeEEcccCCCCCCCcceeeeeeeeeEEEEEc
Q 046822 500 LLISVEDHVGPGKDEIVGKVLI-PVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSL 568 (971)
Q Consensus 500 L~v~V~d~d~~~~d~~iG~~~i-~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~g~i~l~l~l 568 (971)
|.|+|||++..+++++||++.+ ++..+... .......+||+|.... ...|+|++.+.+
T Consensus 73 l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~-~~~~~~~~W~~L~~~~----------~~~Geil~~~~~ 131 (135)
T cd04017 73 VVVELFDQDSVGKDEFLGRSVAKPLVKLDLE-EDFPPKLQWFPIYKGG----------QSAGELLAAFEL 131 (135)
T ss_pred EEEEEEeCcCCCCCccceEEEeeeeeecccC-CCCCCCceEEEeecCC----------CchhheeEEeEE
Confidence 9999999998888999999997 44434332 2345678999997543 246888887765
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.2e-15 Score=139.68 Aligned_cols=103 Identities=25% Similarity=0.430 Sum_probs=91.2
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccC-CCCCeecceeEEEeeCC----CcEEEEEEEeCC
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVD-SLSPKWNEQYTWEVFDP----CTVITVGVFDNC 672 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~-~~nP~Wne~~~~~v~~~----~~~l~i~V~D~~ 672 (971)
|.|+|+|++|+||+.++. .+++ ||||++++++..++|+++.+ +.||.|||.|.|.+..+ ...|.|+|||.+
T Consensus 1 g~L~V~V~~A~~L~~~~~---~~~~-dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~ 76 (124)
T cd04049 1 GTLEVLLISAKGLQDTDF---LGKI-DPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD 76 (124)
T ss_pred CeEEEEEEecCCCCCCCC---CCCc-CceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc
Confidence 689999999999987654 6788 99999999999999999875 89999999999999987 468999999999
Q ss_pred CCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 673 SLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 673 ~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
.++ +|++||++.++|+++..+...+.||+|..
T Consensus 77 ~~~---------~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 77 NFS---------DDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred cCC---------CCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 765 89999999999999977666688999873
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.7e-15 Score=172.85 Aligned_cols=104 Identities=21% Similarity=0.334 Sum_probs=92.8
Q ss_pred CCcccCcEEEEEECCE-EEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcc
Q 046822 619 KGGSVDAYCVAKYGQK-WVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLS 697 (971)
Q Consensus 619 ~g~s~dpy~~~~~g~~-~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~ 697 (971)
.++| ||||+|.++++ ..||+++++++||+|||.|.|.+.++.+.|+|+|||+|.++ +++||++.|||.
T Consensus 74 ~~tS-DPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g----------aD~IG~a~IPL~ 142 (868)
T PLN03008 74 VITS-DPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG----------AQIIGTAKIPVR 142 (868)
T ss_pred cCCC-CceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC----------CceeEEEEEEHH
Confidence 4688 99999999865 57999999999999999999999999899999999999874 589999999999
Q ss_pred cccCCceEeeeEeceecCCCCcccceEEEEEEEEee
Q 046822 698 TLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSC 733 (971)
Q Consensus 698 ~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 733 (971)
+|..|...+.|++|.....+-.+..|+|+++++|..
T Consensus 143 ~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~p 178 (868)
T PLN03008 143 DIASGERISGWFPVLGASGKPPKAETAIFIDMKFTP 178 (868)
T ss_pred HcCCCCceEEEEEccccCCCCCCCCcEEEEEEEEEE
Confidence 999999899999999766544455689999999984
|
|
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.7e-15 Score=141.76 Aligned_cols=91 Identities=31% Similarity=0.551 Sum_probs=83.7
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCc
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDK 676 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~ 676 (971)
+|.|.|+|++|+||+..+ . +.+ ||||++++|++.++|++++++.||.|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d---~-~~s-DPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRD---F-TSS-DPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS- 74 (145)
T ss_pred CeEEEEEEEeeECCCCCC---C-CCc-CcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC-
Confidence 489999999999998754 3 678 9999999999999999999999999999999999999889999999999876
Q ss_pred cccCCCCCCCceeEEEEEEcccccC
Q 046822 677 NIINNSGGRDSRIGKVRIRLSTLES 701 (971)
Q Consensus 677 ~~~~~~~~~d~~iG~~~i~l~~l~~ 701 (971)
+|++||.+.+++.++..
T Consensus 75 --------~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 75 --------KDDSMGEAEIDLEPLVE 91 (145)
T ss_pred --------CCCEEEEEEEEHHHhhh
Confidence 89999999999998754
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=138.04 Aligned_cols=105 Identities=21% Similarity=0.228 Sum_probs=85.6
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC---CEEEeeecccCCCCCeecceeEEE-ee--C-CCcEEEEEE
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---QKWVRTRTVVDSLSPKWNEQYTWE-VF--D-PCTVITVGV 668 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g---~~~~rT~~~~~~~nP~Wne~~~~~-v~--~-~~~~l~i~V 668 (971)
..+.|.|+|++|+||+..+. ..|.+ ||||++.+. .+..||+++++++||.|||.|.|. +. + ....|.|+|
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~--~~~~~-DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDE--QSGTS-DPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred CCCEEEEEEEEeECCCCCCC--CCCCc-CCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 34789999999999998643 12778 999999984 446899999999999999999994 43 1 234799999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCC--ceEeeeEece
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESD--RVYTHSYPLL 712 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~--~~~~~~~~L~ 712 (971)
||+|.++ +|++||++.|+|+++... .....|.+|.
T Consensus 91 ~d~d~~~---------~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 91 LSFDRYS---------RDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EEcCCCC---------CCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9999775 899999999999998543 6677888764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.5e-15 Score=138.43 Aligned_cols=104 Identities=19% Similarity=0.219 Sum_probs=88.2
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE--CC----EEEeeecccCCCCCeecceeEEEeeC---CCcEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY--GQ----KWVRTRTVVDSLSPKWNEQYTWEVFD---PCTVIT 665 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~--g~----~~~rT~~~~~~~nP~Wne~~~~~v~~---~~~~l~ 665 (971)
+..+.|.|+|++|+||++++ ..|.+ ||||++.+ +. .+.||+++++++||+|||.|.|++.. ....|.
T Consensus 11 ~~~~~L~V~V~~arnL~~~~---~~~~~-dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~ 86 (124)
T cd08680 11 SGDSSLVISVEQLRNLSALS---IPENS-KVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQ 86 (124)
T ss_pred CCCCEEEEEEeEecCCcccc---cCCCC-CeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEE
Confidence 45688999999999999874 36788 99999998 22 47999999999999999999999874 345999
Q ss_pred EEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCC-ceEeeeEec
Q 046822 666 VGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESD-RVYTHSYPL 711 (971)
Q Consensus 666 i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~-~~~~~~~~L 711 (971)
|+|||.+.++ ++++||.+.|+|+++... ....+||+|
T Consensus 87 ~~V~~~~~~~---------~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 87 VDVCSVGPDQ---------QEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEEeCCCCC---------ceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999998665 899999999999999544 346889976
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.3e-15 Score=137.76 Aligned_cols=94 Identities=20% Similarity=0.337 Sum_probs=82.9
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeC--CCcEEEEEEEeCC
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFD--PCTVITVGVFDNC 672 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~--~~~~l~i~V~D~~ 672 (971)
..+|.|+|+|++|+||+. +..|.+ ||||++.++++.+||+++++++||+|||.|.|.... ....|+|+|||++
T Consensus 25 ~~~~~L~V~V~~A~~L~~----d~~g~~-DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 25 RGLATLTVTVLRATGLWG----DYFTST-DGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred CCcEEEEEEEEECCCCCc----CcCCCC-CeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 678999999999999973 346788 999999999999999999999999999999998544 3569999999999
Q ss_pred CCCccccCCCCCCCceeEEEEEEcccccCC
Q 046822 673 SLDKNIINNSGGRDSRIGKVRIRLSTLESD 702 (971)
Q Consensus 673 ~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~ 702 (971)
.++ +|++||++.++|.....+
T Consensus 100 ~~s---------~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 100 NGW---------DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCC---------CCCeeEEEEEEecCCcee
Confidence 775 899999999999977644
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=138.59 Aligned_cols=118 Identities=21% Similarity=0.307 Sum_probs=93.5
Q ss_pred EEEEEEeeeC--CCCCCccCCCCcccCcEEEEEE-----CCEEEeeecccCCCCCeecceeEEEeeCC---------CcE
Q 046822 600 LEMGILGATG--LMPMKFKEGKGGSVDAYCVAKY-----GQKWVRTRTVVDSLSPKWNEQYTWEVFDP---------CTV 663 (971)
Q Consensus 600 L~v~v~~a~~--L~~~~~~~~~g~s~dpy~~~~~-----g~~~~rT~~~~~~~nP~Wne~~~~~v~~~---------~~~ 663 (971)
.+++|..|.| |+..+ ..|.+ ||||++.+ +.+.+||+++++|+||+|||.|.|.|... ...
T Consensus 4 ~el~i~~~~~~~l~~~~---~~~~~-DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~ 79 (155)
T cd08690 4 IELTIVRCIGIPLPSGW---NPKDL-DTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHG 79 (155)
T ss_pred eEEEEEEeeccccCCCc---CCCCC-CeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCc
Confidence 4566666666 66543 36778 99999986 35689999999999999999999999654 237
Q ss_pred EEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 664 ITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 664 l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
|.|+|||.+.+. .+|++||++.++|+.+..+.....|++|.... ....|+|++++|.-
T Consensus 80 L~~~V~d~~~f~--------~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~---k~~Gg~l~v~ir~r 137 (155)
T cd08690 80 LKFEVYHKGGFL--------RSDKLLGTAQVKLEPLETKCEIHESVDLMDGR---KATGGKLEVKVRLR 137 (155)
T ss_pred EEEEEEeCCCcc--------cCCCeeEEEEEEcccccccCcceEEEEhhhCC---CCcCCEEEEEEEec
Confidence 999999998763 37999999999999998776667899997321 12359999999865
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.6e-15 Score=139.45 Aligned_cols=106 Identities=25% Similarity=0.432 Sum_probs=90.1
Q ss_pred CCeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKD-GEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVF 77 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~ 77 (971)
..+.|.|+|++|+||+.++ ..+.+||||++.+.+ ..++|++++++.||.|||+|.|.+... ++....|.|.||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~-~l~~~~l~i~v~ 90 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKS-QLETRTLQLSVW 90 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHH-HhCCCEEEEEEE
Confidence 4688999999999999998 788999999999852 468999999999999999999998743 344578999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccCCcccceEEEe
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTL 113 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L 113 (971)
|++.++ ++++||++.++++++... .....||+|
T Consensus 91 d~~~~~-~~~~iG~~~i~l~~l~~~--~~~~~w~~l 123 (123)
T cd08521 91 HHDRFG-RNTFLGEVEIPLDSWDLD--SQQSEWYPL 123 (123)
T ss_pred eCCCCc-CCceeeEEEEeccccccc--CCCccEEEC
Confidence 999886 789999999999999532 234589987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=135.45 Aligned_cols=115 Identities=26% Similarity=0.480 Sum_probs=91.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCC
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSR 86 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d 86 (971)
|.|+|++|+||+.. |.+||||.++++++ .++|+++++ .||.|||+|.|.+... ++....|.|.+||.+..+ ++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~-~~~~~~l~i~v~d~~~~~-~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPP-DVTFFTLSFYNKDKRSKD-RD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCc-cccEEEEEEEEEecccCC-Ce
Confidence 78999999999976 78999999999986 479999989 9999999999998753 334468889999988754 56
Q ss_pred ceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 87 NFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 87 ~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
.++|.+.+..... +.....||+|.++.......|+|++.+.|
T Consensus 76 ~~~g~v~l~~~~~----~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKVALSKLDL----GQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEEEEecCcCC----CCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 7777766554433 23346899999876556778999999875
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=138.53 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=97.7
Q ss_pred EEEEEEEeeC--CCCCCCCCCCCcEEEEEEc-----CeEEEeecccCCCCCeeeeeeEEecCCCC-----CCCcceEEEE
Q 046822 8 LVVEVIAAHN--LMPKDGEGSSSPFVEVEFE-----KQILRTQVKYKDLNPIWNEKLVFDVPDIA-----ELPYKHIEVN 75 (971)
Q Consensus 8 L~V~V~~a~~--L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~v~~~~-----~l~~~~L~i~ 75 (971)
..++|..|++ |+..+..+.+||||++.+. .++.+|+++++|+||+|||+|.|.+.... .+....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3455666666 7788878899999999972 36899999999999999999999996542 3456789999
Q ss_pred EEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 76 VFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 76 V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
|||++.++++|++||++.++|+.+.... . ...|++|.... ....|+|.+++....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~-~-~~~~~~L~~~~--k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKC-E-IHESVDLMDGR--KATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccC-c-ceEEEEhhhCC--CCcCCEEEEEEEecC
Confidence 9999987557999999999999996533 2 34689987432 257799999998754
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=143.43 Aligned_cols=105 Identities=24% Similarity=0.346 Sum_probs=88.7
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-----CCEEEeeecccCCCCCeecceeEEEeeCC----CcEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-----GQKWVRTRTVVDSLSPKWNEQYTWEVFDP----CTVIT 665 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-----g~~~~rT~~~~~~~nP~Wne~~~~~v~~~----~~~l~ 665 (971)
...|.|.|+|++|+||+..+. .|.+ ||||++.+ +...+||++++++.||.|||.|.|++..+ ...|.
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~---~g~~-DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~ 99 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKS---GGTS-DSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLE 99 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCC---CCCC-CCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEE
Confidence 467999999999999998653 6788 99999987 23568999999999999999999986432 34899
Q ss_pred EEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 666 VGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 666 i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
|+|||++.++ +|++||++.+++.++......+.||.|.
T Consensus 100 i~V~d~d~~~---------~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 100 LTVWDHDKLS---------SNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred EEEEeCCCCC---------CCceEEEEEEeCCccccCCCccccccCC
Confidence 9999999765 8999999999999987655557888775
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=135.79 Aligned_cols=118 Identities=25% Similarity=0.348 Sum_probs=97.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSN 84 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~ 84 (971)
-.|.|+|++|+ |...+..+.+||||+++++++ .++|++++++.||.|||+|.|.+.. . ..|.|+|||++..+
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~----~~l~~~V~d~~~~~- 74 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-Q----STLEFKVWSHHTLK- 74 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-C----CEEEEEEEeCCCCC-
Confidence 36899999998 655565889999999999987 8999999999999999999999863 2 68999999999976
Q ss_pred CCceeEEEEEeCccccccCC-cc--cceEEEeEeCCC-CCeeeeEEEEEE
Q 046822 85 SRNFLGKVRAPCSQLCKNEG-EA--TAQLYTLEKRSL-FSHIRGEISLKL 130 (971)
Q Consensus 85 ~d~~lG~~~i~l~~l~~~~~-~~--~~~w~~L~~~~~-~~~~~G~i~l~~ 130 (971)
++++||++.++++++...+. .. ...|++|...+. .+...|+|.+.+
T Consensus 75 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 79999999999999965433 22 235899986653 457789998875
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=137.97 Aligned_cols=109 Identities=22% Similarity=0.273 Sum_probs=93.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccC-CCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYK-DLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSN 84 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~ 84 (971)
|.|.|+|++|++|+..+..+.+||||+++++++.++|++..+ +.||.|||+|.|.+..+.......|.|+|||++.++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~- 79 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFS- 79 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCC-
Confidence 679999999999999888899999999999999899998874 999999999999998762112378999999999876
Q ss_pred CCceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 85 SRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 85 ~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
++++||++.+++.++...+ ....|+.|.+.+
T Consensus 80 ~d~~iG~~~i~l~~l~~~~--~~~~~~~l~p~~ 110 (124)
T cd04049 80 DDDFIGEATIHLKGLFEEG--VEPGTAELVPAK 110 (124)
T ss_pred CCCeEEEEEEEhHHhhhCC--CCcCceEeeccc
Confidence 7999999999999997533 335899998764
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.2e-15 Score=141.46 Aligned_cols=106 Identities=29% Similarity=0.487 Sum_probs=91.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEc----CeEEEeecccCCCCCeeeeeeEEecCCC------------CCCCcce
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFE----KQILRTQVKYKDLNPIWNEKLVFDVPDI------------AELPYKH 71 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~----~~~~~T~~~~~t~nP~wne~f~f~v~~~------------~~l~~~~ 71 (971)
|+|+|++|++|+.+ ..|.+||||++.++ ++.++|++++++.||.|||+|.|.+... +.+....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 68999999999988 78899999999998 6789999999999999999999998765 2335679
Q ss_pred EEEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 72 IEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 72 L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
|.|+|||.+..+ +++|||++.+++.++... .....||+|++++
T Consensus 80 l~i~V~d~~~~~-~~~~IG~~~i~l~~l~~~--~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVS-GDDFLGEVRIPLQGLQQA--GSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCc-CCcEEEEEEEehhhccCC--CcccceEecCCcC
Confidence 999999999875 799999999999998742 2345899998874
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=140.62 Aligned_cols=112 Identities=21% Similarity=0.338 Sum_probs=93.7
Q ss_pred EEEEEEEeecCCCCCCCCC----------CCCCCceEEEEEECCeEEEeeecCCCCCCCCCCCcccceeEEEeecCC-CC
Q 046822 430 LRVSVIEAQDIVPGDKGSA----------MMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPF-ED 498 (971)
Q Consensus 430 L~V~v~~a~~L~~~d~~~~----------~~~~~dpyv~v~~g~~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~-~~ 498 (971)
|.|+|++|+||+.+|.++. ..+.+||||++.++++..||+++ +++.||.|||.|.|.+..+. .+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~-----~~t~nPvWNE~f~f~v~~p~~~~ 76 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVK-----KNSYNPEWNEQIVFPEMFPPLCE 76 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceE-----cCCCCCCcceEEEEEeeCCCcCC
Confidence 6899999999999986521 11468999999999999999999 89999999999999976543 56
Q ss_pred eEEEEEEeCcCCCCCceeEEEEEeccccccccccc---cccceeEEcccCC
Q 046822 499 YLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDK---QVVSRWFNLENHF 546 (971)
Q Consensus 499 ~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~---~~~~~w~~L~~~~ 546 (971)
.|.|+|||+|..++|++||.+.++|+++.....+. ...++|++|.+..
T Consensus 77 ~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 77 RIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 99999999998889999999999999987653221 2457999998876
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=136.64 Aligned_cols=104 Identities=28% Similarity=0.322 Sum_probs=91.2
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-EEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCc
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-KWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDK 676 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~ 676 (971)
|.|+|+|++|++|+..+. .|.+ ||||++.+++ ...+|+++.++.||.|||.|.|++..+...|.|+|||++.++
T Consensus 1 g~L~V~Vi~a~~L~~~d~---~g~~-DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNLEG---VGKI-DPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG- 75 (120)
T ss_pred CeEEEEEEeeECCCCccC---CCCc-CCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC-
Confidence 789999999999998653 6888 9999999976 569999999999999999999999888789999999999765
Q ss_pred cccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecC
Q 046822 677 NIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLH 715 (971)
Q Consensus 677 ~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~ 715 (971)
+|++||++.++|.++..+ ....||-|.+..
T Consensus 76 --------~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 76 --------KDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred --------CCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 889999999999999766 347889887543
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=134.50 Aligned_cols=112 Identities=29% Similarity=0.420 Sum_probs=94.6
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-EEEeeecccCCCCCeecceeEEEeeC-CCcEEEEEEEeCCCCCcc
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-KWVRTRTVVDSLSPKWNEQYTWEVFD-PCTVITVGVFDNCSLDKN 677 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-~~~rT~~~~~~~nP~Wne~~~~~v~~-~~~~l~i~V~D~~~~~~~ 677 (971)
|+|+|++|++|+..+ ..|.+ ||||++.+++ ..++|+++.++.||.|||.|.|.+.+ ....|.|+|||++.++
T Consensus 1 l~v~vi~a~~L~~~~---~~~~~-dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~-- 74 (115)
T cd04040 1 LTVDVISAENLPSAD---RNGKS-DPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG-- 74 (115)
T ss_pred CEEEEEeeeCCCCCC---CCCCC-CCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC--
Confidence 579999999999764 36788 9999999964 56899999999999999999999986 4569999999998664
Q ss_pred ccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEE
Q 046822 678 IINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHL 727 (971)
Q Consensus 678 ~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l 727 (971)
++++||++.+++.++..+.....|++|.. +|..+.|.+.|
T Consensus 75 -------~~~~iG~~~~~l~~l~~~~~~~~~~~L~~---~g~~~~~~~~~ 114 (115)
T cd04040 75 -------KDDLLGSAYIDLSDLEPEETTELTLPLDG---QGGGKLGAVFL 114 (115)
T ss_pred -------CCCceEEEEEEHHHcCCCCcEEEEEECcC---CCCccCceEEc
Confidence 89999999999999988888889999973 23344577654
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-14 Score=136.02 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=87.4
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC---CEEEeeecccCCCCCeecceeEEE-eeC---CCcEEEEEE
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---QKWVRTRTVVDSLSPKWNEQYTWE-VFD---PCTVITVGV 668 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g---~~~~rT~~~~~~~nP~Wne~~~~~-v~~---~~~~l~i~V 668 (971)
..+.|.|+|++|+||++.+. .|.+ ||||++.+. .++.||+++++ .||+|||.|.|+ +.. ....|.++|
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~---~~~~-d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V 88 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDR---GGAS-SWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRL 88 (124)
T ss_pred CCCEEEEEEEEecCCCchhc---CCCC-CcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEE
Confidence 34689999999999998753 6778 999998762 45689999887 999999999998 542 345899999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
||++.++ ++++||++.|+|+++..+.....||+|.
T Consensus 89 ~~~~~~~---------~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 89 YGVERMR---------KERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred EECCCcc---------cCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9999775 8999999999999998887889999985
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.5e-14 Score=135.61 Aligned_cols=121 Identities=21% Similarity=0.325 Sum_probs=98.0
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeE-EEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCC-C
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQI-LRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERR-S 82 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~-~ 82 (971)
...|.|.|++|++|++++ +|||.|.++++. .||+++.++.||.|+|.|.|....+. ..|+|.||+.+. .
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~----~~l~v~v~k~~~~~ 80 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPV----SVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcc----cEEEEEEEEccCcc
Confidence 356899999999999865 799999999987 69999999999999999999866443 689999986543 2
Q ss_pred CC--CCceeEEEEEeCccccccCCcccceEEEeEeCCCCC--------eeeeEEEEEEEeeecc
Q 046822 83 SN--SRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFS--------HIRGEISLKLFVSTTE 136 (971)
Q Consensus 83 ~~--~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~--------~~~G~i~l~~~~~~~~ 136 (971)
+. ++.+||.+.|++.++.. +.....||+|....... ...+.|++++.|.+..
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~--~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSS--RQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcC--CCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 21 57999999999999973 34456999999875443 4458999999987543
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-14 Score=135.26 Aligned_cols=119 Identities=20% Similarity=0.348 Sum_probs=99.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECC---eEEEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEEEE
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGN---QFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVE 505 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~---~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~ 505 (971)
.|+|+|++|++|+..+.. +.+||||++.+++ ..+||+++ +++.||.|||.|.|.+.......|.|+||
T Consensus 2 ~~~V~v~~a~~L~~~~~~----~~~Dpyv~v~~~~~~~~~~kT~~~-----~~t~~P~Wne~f~f~i~~~~~~~L~i~v~ 72 (126)
T cd04043 2 LFTIRIVRAENLKADSSN----GLSDPYVTLVDTNGKRRIAKTRTI-----YDTLNPRWDEEFELEVPAGEPLWISATVW 72 (126)
T ss_pred EEEEEEEEeECCCCCCCC----CCCCceEEEEECCCCeeeecccEe-----cCCCCCcccceEEEEcCCCCCCEEEEEEE
Confidence 589999999999998877 8999999999864 47899999 88999999999999998866678999999
Q ss_pred eCcCCCCCceeEEEEEeccccccccccccccceeEEcccCCCCCCCcceeeeeeeeeEEEEEccCc
Q 046822 506 DHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDGG 571 (971)
Q Consensus 506 d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~g~i~l~l~l~~~ 571 (971)
|++..+++++||++.++|+.+.... +......|++|.. .|++++++.+++.
T Consensus 73 d~d~~~~~~~iG~~~i~l~~~~~~~-~~~~~~~w~~l~~--------------~g~i~l~~~~~~~ 123 (126)
T cd04043 73 DRSFVGKHDLCGRASLKLDPKRFGD-DGLPREIWLDLDT--------------QGRLLLRVSMEGE 123 (126)
T ss_pred ECCCCCCCceEEEEEEecCHHHcCC-CCCCceEEEEcCC--------------CCeEEEEEEEeee
Confidence 9988778999999999998765431 1234578999964 2788998887653
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-14 Score=134.65 Aligned_cols=104 Identities=25% Similarity=0.343 Sum_probs=90.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSN 84 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~ 84 (971)
|.|+|+|++|++|+..+..|.+||||++.+++ ..++|+++.++.||.|||+|.|.+.... +.|.|+|||++.++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~----~~L~v~v~d~~~~~- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPN----QKITLEVMDYEKVG- 75 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCC----CEEEEEEEECCCCC-
Confidence 67999999999999999889999999999987 4689999999999999999999987654 78999999999986
Q ss_pred CCceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 85 SRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 85 ~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
+|++||++.+++.++... ....||.|.+.+
T Consensus 76 ~d~~IG~~~~~l~~l~~~---~~~~~~~~~~~~ 105 (120)
T cd04045 76 KDRSLGSVEINVSDLIKK---NEDGKYVEYDDE 105 (120)
T ss_pred CCCeeeEEEEeHHHhhCC---CCCceEEecCCC
Confidence 789999999999999764 224678887654
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=137.19 Aligned_cols=108 Identities=31% Similarity=0.443 Sum_probs=91.3
Q ss_pred CCeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEc---CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 4 GKEKLVVEVIAAHNLMPKD-GEGSSSPFVEVEFE---KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d-~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
..+.|.|+|++|+||+.++ ..+.+||||++.+. .+.++|+++++++||.|||+|.|.+... ++....|.|.|||+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~-~l~~~~l~i~v~d~ 90 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFK-ELQRRTLRLSVYDV 90 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHH-HhcccEEEEEEEEC
Confidence 4678999999999999998 68899999999985 3468999999999999999999998643 23346899999999
Q ss_pred CCCCCCCceeEEEEEeCccccccCCcccceEEEeEe
Q 046822 80 RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEK 115 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~ 115 (971)
+..+ ++++||++.++|+++.... ....|++|++
T Consensus 91 ~~~~-~~~~iG~~~i~L~~l~~~~--~~~~w~~L~~ 123 (123)
T cd08390 91 DRFS-RHCIIGHVLFPLKDLDLVK--GGVVWRDLEP 123 (123)
T ss_pred CcCC-CCcEEEEEEEeccceecCC--CceEEEeCCC
Confidence 9876 7899999999999997543 2348999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.7e-14 Score=135.16 Aligned_cols=106 Identities=16% Similarity=0.195 Sum_probs=89.8
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC---CEEEeeecccCCCCCeecceeEEEeeCC---CcEEEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---QKWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITVGV 668 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g---~~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i~V 668 (971)
+..+.|.|+|++|+||+.++. ..|.+ ||||++.+. ....+|+++++++||.|||.|.|++... ...|.|.|
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~--~~~~~-dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v 87 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTK--DVAHC-DPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSV 87 (123)
T ss_pred CCCCEEEEEEEEecCCCCccC--CCCCC-CcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEE
Confidence 445789999999999998651 26778 999999983 4568999999999999999999998753 35899999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
||.+..+ ++++||++.++|+++........|++|.
T Consensus 88 ~d~~~~~---------~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 88 YDVDRFS---------RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred EECCcCC---------CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 9998654 7899999999999998777778999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-14 Score=133.43 Aligned_cols=112 Identities=31% Similarity=0.490 Sum_probs=87.9
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE-EEeeecccCCCCCeecceeEEEeeCC---CcEEEEEEEeCCCCC
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-WVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITVGVFDNCSLD 675 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i~V~D~~~~~ 675 (971)
|.|+|++|+||+.. |.+ ||||+++++++ +++|+++.+ .||.|||+|.|.+... ...|.|.+||.+...
T Consensus 2 L~v~vi~a~~l~~~------~~~-dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~ 73 (117)
T cd08383 2 LRLRILEAKNLPSK------GTR-DPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD 73 (117)
T ss_pred eEEEEEEecCCCcC------CCC-CceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC
Confidence 78999999999863 678 99999999875 589999988 9999999999999863 347888888887432
Q ss_pred ccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 676 KNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 676 ~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
++..+|++.|.. +..+.....||+|...+.. .+..|+|+|+++|
T Consensus 74 ---------~~~~~g~v~l~~--~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~ 117 (117)
T cd08383 74 ---------RDIVIGKVALSK--LDLGQGKDEWFPLTPVDPD-SEVQGSVRLRARY 117 (117)
T ss_pred ---------CeeEEEEEEecC--cCCCCcceeEEECccCCCC-CCcCceEEEEEEC
Confidence 566777765544 4446667899999865442 2346999999976
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=140.03 Aligned_cols=100 Identities=31% Similarity=0.522 Sum_probs=86.3
Q ss_pred CCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----------------------------eEEEeecccCCCCCee
Q 046822 3 DGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----------------------------QILRTQVKYKDLNPIW 53 (971)
Q Consensus 3 ~~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----------------------------~~~~T~~~~~t~nP~w 53 (971)
...+.|.|+|++|+||.++|..|.+||||+|.+.. +.++|+++++++||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 45789999999999999999999999999999863 2378999999999999
Q ss_pred eeeeEEecCCCCCCCcceEEEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEe
Q 046822 54 NEKLVFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTL 113 (971)
Q Consensus 54 ne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L 113 (971)
||+|.|.+.... ...|.|+|||++ +++||++.++++++.. . ....||+|
T Consensus 105 nE~F~f~v~~~~---~~~L~i~V~D~d-----d~~IG~v~i~l~~l~~--~-~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDVS---NDQLHLDIWDHD-----DDFLGCVNIPLKDLPS--C-GLDSWFKL 153 (153)
T ss_pred ccEEEEEeccCC---CCEEEEEEEecC-----CCeEEEEEEEHHHhCC--C-CCCCeEeC
Confidence 999999987542 479999999987 7899999999999973 2 24689987
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=139.19 Aligned_cols=107 Identities=28% Similarity=0.462 Sum_probs=89.5
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+.+|..|.+||||++.+.+ ..++|+++++++||.|||+|.|.+... ++....|.|+|||
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~-~l~~~~l~~~V~d 89 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHS-DLAKKTLEITVWD 89 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHH-HhCCCEEEEEEEe
Confidence 4689999999999999999889999999999963 368999999999999999999998743 3445789999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeC
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~ 116 (971)
++..+ ++++||++.+++... + +...+||.+...
T Consensus 90 ~d~~~-~~~~lG~~~i~l~~~---~-~~~~~W~~~l~~ 122 (133)
T cd08384 90 KDIGK-SNDYIGGLQLGINAK---G-ERLRHWLDCLKN 122 (133)
T ss_pred CCCCC-CccEEEEEEEecCCC---C-chHHHHHHHHhC
Confidence 99876 789999999999862 2 233578877543
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-14 Score=139.17 Aligned_cols=106 Identities=27% Similarity=0.427 Sum_probs=87.5
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|++|+.++..|.+||||+|.+.+ ..++|+++++++||.|||+|.|.+... ++....|.|+|||
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~-~l~~~~l~~~v~d 91 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFE-QIQKVHLIVTVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHH-HhCCCEEEEEEEe
Confidence 4678999999999999999999999999999952 367899999999999999999998642 3444689999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEe
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEK 115 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~ 115 (971)
++.++ ++++||++.|++... +. ....|+++..
T Consensus 92 ~~~~~-~~~~iG~~~i~~~~~---~~-~~~~W~~~~~ 123 (136)
T cd08402 92 YDRIG-KNDPIGKVVLGCNAT---GA-ELRHWSDMLA 123 (136)
T ss_pred CCCCC-CCceeEEEEECCccC---Ch-HHHHHHHHHh
Confidence 99987 799999999999763 22 2246666644
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-14 Score=135.03 Aligned_cols=92 Identities=25% Similarity=0.351 Sum_probs=81.2
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCC
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSN 84 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~ 84 (971)
.+.|.|+|++|++|+. +..|.+||||+|.++++.++|++++++.||+|||+|.|...... ....|.|+|||++.++
T Consensus 27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~--~~~~L~v~V~D~d~~s- 102 (127)
T cd04032 27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELS--PGGKLRFEVWDRDNGW- 102 (127)
T ss_pred cEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCC--CCCEEEEEEEeCCCCC-
Confidence 4799999999999984 66788999999999999999999999999999999999753321 2379999999999987
Q ss_pred CCceeEEEEEeCcccc
Q 046822 85 SRNFLGKVRAPCSQLC 100 (971)
Q Consensus 85 ~d~~lG~~~i~l~~l~ 100 (971)
+|++||++.+++....
T Consensus 103 ~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 103 DDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCeeEEEEEEecCCc
Confidence 7999999999999764
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-14 Score=137.65 Aligned_cols=102 Identities=20% Similarity=0.275 Sum_probs=89.5
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC----CEEEeeecccCCCCCeecceeEEEeeCC---------------
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG----QKWVRTRTVVDSLSPKWNEQYTWEVFDP--------------- 660 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g----~~~~rT~~~~~~~nP~Wne~~~~~v~~~--------------- 660 (971)
|+|.|++|+||+.+ . .|.+ ||||++.++ +...||+++.++.||.|||.|.|++...
T Consensus 1 L~V~Vi~A~~L~~~-~---~g~~-dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~ 75 (137)
T cd08675 1 LSVRVLECRDLALK-S---NGTC-DPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDL 75 (137)
T ss_pred CEEEEEEccCCCcc-c---CCCC-CcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccc
Confidence 57999999999875 2 6788 999999998 7789999999999999999999998875
Q ss_pred -CcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecC
Q 046822 661 -CTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLH 715 (971)
Q Consensus 661 -~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~ 715 (971)
...|.|+|||++.++ ++++||++.++|.++........||+|....
T Consensus 76 ~~~~l~i~V~d~~~~~---------~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 76 EKSELRVELWHASMVS---------GDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred cccEEEEEEEcCCcCc---------CCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 348999999999664 8999999999999997766678999998654
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-14 Score=136.95 Aligned_cols=107 Identities=18% Similarity=0.275 Sum_probs=88.8
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC------eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK------QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVF 77 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~ 77 (971)
..++|.|+|++|+||+.++..|.+||||++.+.. .+++|++++++.||+|||+|.|.+.. +++....|.|.||
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~-~~l~~~~L~~~V~ 91 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVAL-FQLSEVTLMFSVY 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCH-HHhCccEEEEEEE
Confidence 4689999999999999999999999999999963 25799999999999999999999874 3566789999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEe
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEK 115 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~ 115 (971)
|++.++ ++++||++.+++...- .....+|+.+..
T Consensus 92 ~~~~~~-~~~~iG~v~l~~~~~~---~~~~~hW~~~l~ 125 (138)
T cd08408 92 NKRKMK-RKEMIGWFSLGLNSSG---EEEEEHWNEMKE 125 (138)
T ss_pred ECCCCC-CCcEEEEEEECCcCCC---chHHHHHHHHHh
Confidence 999976 8999999999987542 112235666643
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.5e-14 Score=132.45 Aligned_cols=116 Identities=22% Similarity=0.305 Sum_probs=92.1
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE-EEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCcc
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-WVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKN 677 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~ 677 (971)
.|+|+|++|+ |...+ ..|.+ ||||+++++++ ..+|+++.+++||.|||.|.|.+. ....|.|+|||++.++
T Consensus 3 ~L~V~i~~a~-l~~~~---~~~~~-dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~-- 74 (125)
T cd04021 3 QLQITVESAK-LKSNS---KSFKP-DPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLK-- 74 (125)
T ss_pred eEEEEEEeeE-CCCCC---cCCCC-CeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCC--
Confidence 6899999999 54332 36778 99999999877 899999999999999999999986 4568999999999765
Q ss_pred ccCCCCCCCceeEEEEEEcccccCCce-----EeeeEeceecCCCCcccceEEEEEE
Q 046822 678 IINNSGGRDSRIGKVRIRLSTLESDRV-----YTHSYPLLMLHPSGVKKMGELHLAV 729 (971)
Q Consensus 678 ~~~~~~~~d~~iG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~i~l~~ 729 (971)
+|++||++.++|+++..+.. +..|++|........+..|+|++.+
T Consensus 75 -------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 -------ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred -------CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 89999999999999864221 2458888754421223469998876
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.9e-14 Score=131.14 Aligned_cols=112 Identities=30% Similarity=0.473 Sum_probs=93.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCC
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSR 86 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d 86 (971)
|+|+|++|++|+..+..|.+||||++.+++ +.++|+++.++.||.|||+|.|.+.... ...|.|+|||++..+ ++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~---~~~l~~~v~d~~~~~-~~ 76 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRV---RAVLKVEVYDWDRGG-KD 76 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCC---CCEEEEEEEeCCCCC-CC
Confidence 589999999999998888999999999976 4589999999999999999999987543 378999999999876 79
Q ss_pred ceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEE
Q 046822 87 NFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEIS 127 (971)
Q Consensus 87 ~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~ 127 (971)
++||++.+++.++... .....|++|.+.+. ...|.+.
T Consensus 77 ~~iG~~~~~l~~l~~~--~~~~~~~~L~~~g~--~~~~~~~ 113 (115)
T cd04040 77 DLLGSAYIDLSDLEPE--ETTELTLPLDGQGG--GKLGAVF 113 (115)
T ss_pred CceEEEEEEHHHcCCC--CcEEEEEECcCCCC--ccCceEE
Confidence 9999999999998642 23457899987653 3446554
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-14 Score=139.05 Aligned_cols=107 Identities=26% Similarity=0.382 Sum_probs=89.0
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+.+|..|.+||||++.+.. .+.+|+++++++||.|||+|.|.+... .+....|.|+|||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~-~~~~~~l~~~v~d 91 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSE-ELEDISVEFLVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHH-HhCCCEEEEEEEE
Confidence 3578999999999999999999999999999853 257899999999999999999998642 3345789999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeC
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~ 116 (971)
++.++ ++++||++.+++... + ....+|+.|...
T Consensus 92 ~d~~~-~~~~iG~~~~~~~~~---~-~~~~~w~~l~~~ 124 (136)
T cd08404 92 SDRVT-KNEVIGRLVLGPKAS---G-SGGHHWKEVCNP 124 (136)
T ss_pred CCCCC-CCccEEEEEECCcCC---C-chHHHHHHHHhC
Confidence 99987 799999999999882 2 223578887544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.5e-14 Score=135.26 Aligned_cols=97 Identities=33% Similarity=0.477 Sum_probs=84.4
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc-------CeEEEeecccCCCCCeeeeeeEEecCCCC-CCCcceEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE-------KQILRTQVKYKDLNPIWNEKLVFDVPDIA-ELPYKHIEVN 75 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~-------~~~~~T~~~~~t~nP~wne~f~f~v~~~~-~l~~~~L~i~ 75 (971)
..+.|.|+|++|++|+..+..|.+||||+|.+. ...++|+++++|+||.|||+|.|.+.... ......|.|+
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 357899999999999999988999999999996 34789999999999999999999987532 2234789999
Q ss_pred EEeCCCCCCCCceeEEEEEeCccccc
Q 046822 76 VFNERRSSNSRNFLGKVRAPCSQLCK 101 (971)
Q Consensus 76 V~d~~~~~~~d~~lG~~~i~l~~l~~ 101 (971)
|||++.++ ++++||++.++|+++..
T Consensus 94 V~d~d~~~-~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 94 VKDYDLLG-SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEecCCCC-CCcEeEEEEEeHHHCCc
Confidence 99999986 79999999999999964
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.4e-14 Score=131.17 Aligned_cols=93 Identities=17% Similarity=0.266 Sum_probs=79.7
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCC-CCeeeeeeEEecCCCCCCCcceEEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDL-NPIWNEKLVFDVPDIAELPYKHIEVNVF 77 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~-nP~wne~f~f~v~~~~~l~~~~L~i~V~ 77 (971)
..++|.|+|++|+||++.+..+.+||||+|++.. .+++|+++++|+ ||.|||+|.|++... ..+-.|.|+||
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~--~~~v~l~v~v~ 89 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQ--EHGIQFLIKLY 89 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCch--hheeEEEEEEE
Confidence 4688999999999999886667789999999862 378899999995 699999999999853 23578999999
Q ss_pred eCCCCCCCCceeEEEEEeCccc
Q 046822 78 NERRSSNSRNFLGKVRAPCSQL 99 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l 99 (971)
|++..+ ++++||++.++.+..
T Consensus 90 d~~~~~-~n~~IG~v~lG~~~~ 110 (135)
T cd08692 90 SRSSVR-RKHFLGQVWISSDSS 110 (135)
T ss_pred eCCCCc-CCceEEEEEECCccC
Confidence 999876 799999999999764
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.4e-14 Score=133.32 Aligned_cols=104 Identities=26% Similarity=0.375 Sum_probs=88.8
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-----EEEeeecccCCCCCeecceeEEEeeCC--CcEEEEEEEe
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-----KWVRTRTVVDSLSPKWNEQYTWEVFDP--CTVITVGVFD 670 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-----~~~rT~~~~~~~nP~Wne~~~~~v~~~--~~~l~i~V~D 670 (971)
|.|.|+|++|++|+..+ ..|.+ ||||.+.+.+ ...||+++.++.||.|||.|.|++... ...|.|+|||
T Consensus 13 ~~l~v~i~~a~nL~~~~---~~~~~-dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d 88 (131)
T cd04026 13 NKLTVEVREAKNLIPMD---PNGLS-DPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWD 88 (131)
T ss_pred CEEEEEEEEeeCCCCcC---CCCCC-CCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEE
Confidence 68999999999998754 36778 9999999952 579999999999999999999998754 4589999999
Q ss_pred CCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecC
Q 046822 671 NCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLH 715 (971)
Q Consensus 671 ~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~ 715 (971)
++.++ ++++||++.++|+++... ....||+|.+.+
T Consensus 89 ~~~~~---------~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~ 123 (131)
T cd04026 89 WDRTT---------RNDFMGSLSFGVSELIKM-PVDGWYKLLNQE 123 (131)
T ss_pred CCCCC---------CcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence 98654 899999999999999754 557899998543
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.6e-14 Score=164.08 Aligned_cols=390 Identities=20% Similarity=0.205 Sum_probs=230.2
Q ss_pred eEEEEEEEEeecCC---CCCCCCeEEEEEECCeeeeeeeecCC-CCccccEEEEeccCC---------CcceEEEEEecC
Q 046822 272 QYLYVRVVKARDIS---LFGGGEIVAEVKLGNYRGITKRVSSN-HLQWDQVFAFSKDCI---------QSSAAEIFVKES 338 (971)
Q Consensus 272 ~~L~V~v~~a~~L~---~~~~~dpyV~v~~~~~~~kT~~~~~~-nP~wne~f~f~~~~~---------~~~~l~v~v~D~ 338 (971)
+.+++.|.+|++|. ..+-+|||+.+.+-++...|.++.++ ||.|+++..|.-.++ +...+.++++|.
T Consensus 206 ~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~ 285 (1105)
T KOG1326|consen 206 SPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDL 285 (1105)
T ss_pred hhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehh
Confidence 56888999999998 66789999999999999999999999 999999999975432 124566777776
Q ss_pred ---CCCcccEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCccccEEEEEEEEEecccchHHHHHhhccccccCCCCcc
Q 046822 339 ---DKDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGTQADEAFAEAWHSKAANVHFDGLC 415 (971)
Q Consensus 339 ---~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 415 (971)
+.++++|.+.....-+.. + .+-.|+++....- ..|++.++..+..+.. +-.|... ..+...
T Consensus 286 dr~g~~ef~gr~~~~p~V~~~--~----p~lkw~p~~rg~~---l~gd~l~a~eliq~~~---~i~~p~~----~~~~~~ 349 (1105)
T KOG1326|consen 286 DRSGINEFKGRKKQRPYVMVQ--C----PALKWVPTMRGAF---LDGDVLIAAELIQIGK---PIPQPPP----QREIIF 349 (1105)
T ss_pred hhhchHHhhcccccceEEEec--C----CccceEEeecccc---cccchhHHHHHHhhcC---CCCCCCc----ccccce
Confidence 899999998765443322 1 1228998875432 4467665441110000 0001000 000000
Q ss_pred ccccccccCCceEEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECCeEEEeeecCCCCCCCCCCCcccceeEEEe-ec
Q 046822 416 SLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLLFVV-AE 494 (971)
Q Consensus 416 ~~~~k~~~~p~l~~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~~~~rT~~~~~~~~~~~~nP~w~e~f~f~~-~~ 494 (971)
..-++ ...|.+..-.++| =+.+|..+...+ +.....|-+.+.+|++..++..+. ..-.||.+...+.+.. .-
T Consensus 350 ~~vp~-~iRp~~q~~~~ev-l~wgLrn~k~~~-m~~~~~P~~~~e~g~e~v~s~~I~----~~k~npnf~s~~~~~~v~l 422 (1105)
T KOG1326|consen 350 SLVPK-KIRPKTQIGKAEL-LMWGLRNPKKSG-MASTFSPALLVEFGGERVSSFSIF----NRKKNPNFPSRVLGRLVIL 422 (1105)
T ss_pred ecccc-CCCcceeeeeeeh-hhhhhccccccc-ccccCCcceeEeeCCceEeeeeeh----hhhhCCCCceeEEEEEEec
Confidence 00000 0223333233332 134554444331 124567888889999988888772 4556888887665433 22
Q ss_pred CC----CCeEEEEEEeCcCCCCCceeEEEEEec-cccccc----------------------ccc--c------------
Q 046822 495 PF----EDYLLISVEDHVGPGKDEIVGKVLIPV-SAVERR----------------------TDD--K------------ 533 (971)
Q Consensus 495 ~~----~~~L~v~V~d~d~~~~d~~iG~~~i~L-~~l~~~----------------------~~~--~------------ 533 (971)
|. ...+.+.|.|.+.++.-..+|.|.|.- ..+.-+ .+. +
T Consensus 423 pd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~ 502 (1105)
T KOG1326|consen 423 PDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHCNSSTLPASPH 502 (1105)
T ss_pred cchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhccccCCCCCcc
Confidence 22 347999999999999999999998761 111000 000 0
Q ss_pred -----cccceeEEcccCCCCC--C---Ccce-------------eeeeee----eeEEEEEccCcc-------cccCcc-
Q 046822 534 -----QVVSRWFNLENHFGNQ--G---ESKV-------------VTRFGS----RIHLRVSLDGGY-------HVLDEA- 578 (971)
Q Consensus 534 -----~~~~~w~~L~~~~~~~--~---~~~~-------------~~~~~g----~i~l~l~l~~~~-------~~~~~~- 578 (971)
....-|-.+....++. . .-+. ...|.| -+.+.++ .|.. ++..+.
T Consensus 503 ~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~D~~~~f~l~-rG~~~~e~~e~~Ivg~fK 581 (1105)
T KOG1326|consen 503 EDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQDWAVTFKLY-RGKEGLECLEQQIVGEFK 581 (1105)
T ss_pred ccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhhhccceeEee-eccccCCCcccchhhhhh
Confidence 0001111111111000 0 0000 001111 1111111 1110 000000
Q ss_pred ---------ccccCCCcccccc-cC--CCceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEE--EeeecccCC
Q 046822 579 ---------TLYSSDVKPTAKQ-LW--KPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKW--VRTRTVVDS 644 (971)
Q Consensus 579 ---------~~~~sd~~~~~~~-~~--~~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~--~rT~~~~~~ 644 (971)
....+...|..-+ +. .+-.-.++|+|++|.+|.+. |++|++ |||+++.+|.+. -+...+.++
T Consensus 582 gl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~---D~ng~a-dpYv~l~lGk~~~~d~~~yip~t 657 (1105)
T KOG1326|consen 582 GLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPS---DGNGDA-DPYVKLLLGKKRTLDRAHYIPNT 657 (1105)
T ss_pred cceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeecccc---CCCCCc-CceeeeeeccchhhhhhhcCcCC
Confidence 0000111111000 10 12334568999999999885 669999 999999999887 566778999
Q ss_pred CCCeecceeEEEeeCCCc-EEEEEEEeCCCCCccccCCCCCCCceeEEEEEEccc
Q 046822 645 LSPKWNEQYTWEVFDPCT-VITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLST 698 (971)
Q Consensus 645 ~nP~Wne~~~~~v~~~~~-~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~ 698 (971)
+||+|++.|.+....|.. .++++|||+|.++ .|+.||...|+|+.
T Consensus 658 lnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~---------~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 658 LNPVFGKMFELECLLPFEKDLIVEVYDHDLEA---------QDEKIGETTIDLEN 703 (1105)
T ss_pred CCcHHHHHHHhhcccchhhcceeEEEEeeccc---------ccchhhceehhhhh
Confidence 999999999999998766 8999999999775 89999999999986
|
|
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=8e-14 Score=133.57 Aligned_cols=93 Identities=20% Similarity=0.291 Sum_probs=80.6
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-------CEEEeeecccCCCCCeecceeEEEeeCC-----CcE
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-------QKWVRTRTVVDSLSPKWNEQYTWEVFDP-----CTV 663 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-------~~~~rT~~~~~~~nP~Wne~~~~~v~~~-----~~~ 663 (971)
..+.|.|+|++|++|+.++ ..|.+ ||||++.+. ....||+++++++||.|||.|.|++... ...
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~---~~g~~-dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~ 89 (133)
T cd04009 14 SEQSLRVEILNARNLLPLD---SNGSS-DPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGAL 89 (133)
T ss_pred CCCEEEEEEEEeeCCCCcC---CCCCC-CCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCE
Confidence 3468999999999999864 36888 999999984 3468999999999999999999998753 348
Q ss_pred EEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccC
Q 046822 664 ITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLES 701 (971)
Q Consensus 664 l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~ 701 (971)
|.|+|||++.++ +|++||++.++|++|..
T Consensus 90 l~~~V~d~d~~~---------~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 90 LLFTVKDYDLLG---------SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEEEEecCCCC---------CCcEeEEEEEeHHHCCc
Confidence 999999999765 89999999999999864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.52 E-value=5e-14 Score=135.74 Aligned_cols=94 Identities=28% Similarity=0.485 Sum_probs=81.5
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc--C---eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE--K---QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||...+..|.+||||++.+. + ..++|++++++.||.|||+|.|.+... .+....|.|+|||
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~-~~~~~~l~~~v~d 91 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLE-RLRETTLIITVMD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHH-HhCCCEEEEEEEE
Confidence 467899999999999999989999999999984 2 357899999999999999999997632 2334689999999
Q ss_pred CCCCCCCCceeEEEEEeCccc
Q 046822 79 ERRSSNSRNFLGKVRAPCSQL 99 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l 99 (971)
++.++ ++++||++.+++.+.
T Consensus 92 ~~~~~-~~~~lG~~~i~~~~~ 111 (136)
T cd08405 92 KDRLS-RNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCC-CCcEeEEEEECCccC
Confidence 99986 789999999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.8e-14 Score=134.67 Aligned_cols=101 Identities=29% Similarity=0.503 Sum_probs=88.2
Q ss_pred CCceEEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECC-----------------------------eEEEeeecCCC
Q 046822 424 SPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGN-----------------------------QFLKTRIAAPS 474 (971)
Q Consensus 424 ~p~l~~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~-----------------------------~~~rT~~~~~~ 474 (971)
.|..+.|+|+|++|++|.++|.. |.+||||++.++. +.++|+++
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~----g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~--- 96 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVN----GFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVK--- 96 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCC----CCCCceEEEEEcccccccccccccccccccccccccccccccccEeccee---
Confidence 45678999999999999999988 8999999999853 24789888
Q ss_pred CCCCCCCCcccceeEEEeecCCCCeEEEEEEeCcCCCCCceeEEEEEeccccccccccccccceeEEc
Q 046822 475 ATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNL 542 (971)
Q Consensus 475 ~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L 542 (971)
.+++||.|||.|.|.+..+..+.|.|+|||++ +++||++.++++++... ....||.|
T Consensus 97 --~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~-----~~d~W~~L 153 (153)
T cd08676 97 --PQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSC-----GLDSWFKL 153 (153)
T ss_pred --cCCCCCccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCC-----CCCCeEeC
Confidence 89999999999999998776779999999986 88999999999998732 24899986
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.2e-14 Score=135.54 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=86.1
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC--CE---EEeeecccCCCCCeecceeEEEeeC---CCcEEEEE
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG--QK---WVRTRTVVDSLSPKWNEQYTWEVFD---PCTVITVG 667 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g--~~---~~rT~~~~~~~nP~Wne~~~~~v~~---~~~~l~i~ 667 (971)
..+.|.|+|++|+||+.++. .|.+ ||||++.+. ++ ..||+++++++||.|||.|.|.+.. ....|.|+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~---~g~~-Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~ 88 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDV---SGLA-DPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFL 88 (136)
T ss_pred CCCeEEEEEEEeeCCCcccc---CCCC-CeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 34689999999999998654 7888 999999983 32 4789999999999999999999874 34479999
Q ss_pred EEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 668 VFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
|||++.++ ++++||++.+++... +....+|++|..
T Consensus 89 v~d~d~~~---------~~~~iG~~~~~~~~~--~~~~~~w~~l~~ 123 (136)
T cd08404 89 VLDSDRVT---------KNEVIGRLVLGPKAS--GSGGHHWKEVCN 123 (136)
T ss_pred EEECCCCC---------CCccEEEEEECCcCC--CchHHHHHHHHh
Confidence 99999775 899999999999983 444588998864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.9e-14 Score=134.42 Aligned_cols=104 Identities=21% Similarity=0.221 Sum_probs=85.0
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC---CE--EEeeecccCCCCCeecceeEEEeeC---CCcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---QK--WVRTRTVVDSLSPKWNEQYTWEVFD---PCTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g---~~--~~rT~~~~~~~nP~Wne~~~~~v~~---~~~~l~i 666 (971)
+..+.|.|+|++|+||++.+ ..|.+ ||||++.+. .+ +.||+++++++||+|||.|.|.|.. ....|.|
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~~---~~g~~-DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~ 87 (136)
T cd08406 12 PTAERLTVVVVKARNLVWDN---GKTTA-DPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRV 87 (136)
T ss_pred CCCCEEEEEEEEeeCCCCcc---CCCCC-CeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEE
Confidence 44568999999999999864 47888 999999982 22 5689999999999999999999874 3448999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
+|||+|.++ ++++||++.|.... .+...++|..+..
T Consensus 88 ~V~~~d~~~---------~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 88 TVAESTEDG---------KTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred EEEeCCCCC---------CCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 999999765 89999999998765 3444578877764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.7e-14 Score=133.91 Aligned_cols=108 Identities=23% Similarity=0.402 Sum_probs=86.6
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+..|..|.+||||++.+.. +.++|+++++|+||.|||+|.|.+.. +++....|.|+|||
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~-~~l~~~~l~~~V~d 90 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQ-EELENVSLVFTVYG 90 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCH-HHhCCCEEEEEEEe
Confidence 4678999999999999999999999999999842 35799999999999999999999864 23444679999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeC
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~ 116 (971)
++..+ ++++||++.|...... ......|+.|...
T Consensus 91 ~d~~~-~~~~iG~~~l~~~~~~---~~~~~~W~~l~~~ 124 (135)
T cd08410 91 HNVKS-SNDFIGRIVIGQYSSG---PSETNHWRRMLNS 124 (135)
T ss_pred CCCCC-CCcEEEEEEEcCccCC---chHHHHHHHHHhC
Confidence 99876 8999999987654432 2223467777544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.7e-14 Score=131.39 Aligned_cols=91 Identities=21% Similarity=0.333 Sum_probs=81.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeE--EEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQI--LRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSN 84 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~--~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~ 84 (971)
.|+|.|++|++|+..|..|.+||||++.++++. .+|+++++++||.|||+|.|.+..+. ...|.|+|||++.++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~---~~~L~~~V~d~d~~~- 76 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPG---NSILKISVMDYDLLG- 76 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCC---CCEEEEEEEECCCCC-
Confidence 379999999999999999999999999999865 57888889999999999999976544 378999999999986
Q ss_pred CCceeEEEEEeCccccc
Q 046822 85 SRNFLGKVRAPCSQLCK 101 (971)
Q Consensus 85 ~d~~lG~~~i~l~~l~~ 101 (971)
+|++||++.+++++...
T Consensus 77 ~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 77 SDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCceeEEEEEeeccccc
Confidence 79999999999998753
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.6e-14 Score=135.14 Aligned_cols=106 Identities=20% Similarity=0.254 Sum_probs=85.4
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-----EEEeeecccCCCCCeecceeEEEeeCC---CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-----KWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-----~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i 666 (971)
+..|.|.|.|++|+||++++. +..+.+ ||||++.+.. .+.||+++++++||+|||.|.|.+... ...|.|
T Consensus 12 ~~~~~L~V~V~karnL~~~d~-~~~~~~-DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~ 89 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQL-KLLLGI-DVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL 89 (138)
T ss_pred CCCCeEEEEEEEecCCCcccc-CCCCCC-CeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence 456889999999999998763 123447 9999999842 246899999999999999999998752 448999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
+|||+|.++ ++++||++.+.+.. .|....+|..+..
T Consensus 90 ~V~d~d~~~---------~~d~iG~v~lg~~~--~g~~~~hW~~ml~ 125 (138)
T cd08407 90 EVLNQDSPG---------QSLPLGRCSLGLHT--SGTERQHWEEMLD 125 (138)
T ss_pred EEEeCCCCc---------CcceeceEEecCcC--CCcHHHHHHHHHh
Confidence 999999776 89999999999975 3444567776653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7e-15 Score=155.07 Aligned_cols=107 Identities=27% Similarity=0.502 Sum_probs=93.0
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
....|.|+|.+|+||-++|.+|.|||||++++-. .+++|++++.++||+|||+|.|.+...+. +..|.|+|||
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~Dk--drRlsiEvWD 255 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDK--DRRLSIEVWD 255 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccc--cceeEEEEec
Confidence 3567999999999999999999999999999952 36899999999999999999999875442 4799999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeC
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~ 116 (971)
+|+.+ +++|+|..++.+++|...+ ...||.|...
T Consensus 256 WDrTs-RNDFMGslSFgisEl~K~p---~~GWyKlLsq 289 (683)
T KOG0696|consen 256 WDRTS-RNDFMGSLSFGISELQKAP---VDGWYKLLSQ 289 (683)
T ss_pred ccccc-cccccceecccHHHHhhcc---hhhHHHHhhh
Confidence 99987 8999999999999996533 3479999754
|
|
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.4e-14 Score=133.44 Aligned_cols=106 Identities=28% Similarity=0.416 Sum_probs=86.1
Q ss_pred CCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEE
Q 046822 3 DGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVF 77 (971)
Q Consensus 3 ~~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~ 77 (971)
...+.|+|+|++|++|++++..|.+||||++.+.. ..++|+++++++||.|||+|.|.+.. +.+....|.|+||
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~-~~~~~~~l~~~v~ 89 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPP-ENVDNVSLIIAVV 89 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCH-HHhCCCEEEEEEE
Confidence 35689999999999999999999999999999852 26789999999999999999999763 2334467999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
|++.++ ++++||++.+++... ......|+.+.
T Consensus 90 d~~~~~-~~~~IG~~~l~~~~~----~~~~~~w~~~~ 121 (134)
T cd08403 90 DYDRVG-HNELIGVCRVGPNAD----GQGREHWNEML 121 (134)
T ss_pred ECCCCC-CCceeEEEEECCCCC----CchHHHHHHHH
Confidence 999987 799999999988732 12223566654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.50 E-value=5e-14 Score=135.72 Aligned_cols=104 Identities=28% Similarity=0.320 Sum_probs=86.9
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC--C---EEEeeecccCCCCCeecceeEEEeeCC---CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG--Q---KWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g--~---~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i 666 (971)
+..|.|.|+|++|++|+.++ ..|.+ ||||++.++ + ...+|+++++++||.|||.|.|++... ...|.|
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~d---~~g~~-dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~ 87 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKMD---VGGLS-DPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIV 87 (136)
T ss_pred CCCCeEEEEEEEeeCCCccc---CCCCC-CCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 56689999999999999764 47788 999999984 2 357899999999999999999998643 237999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
+|||++.++ +|++||++.|++... +....+|+++..
T Consensus 88 ~v~d~~~~~---------~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 88 TVLDYDRIG---------KNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EEEeCCCCC---------CCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 999999775 899999999999875 444578888874
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.7e-14 Score=134.09 Aligned_cols=93 Identities=23% Similarity=0.302 Sum_probs=80.8
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+..+ .+.+||||++.+.. .+++|++++++.||.|||+|.|.+.. +.+....|.|.|||
T Consensus 13 ~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~-~~l~~~~L~~~V~~ 90 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTS-RQLDTASLSLSVMQ 90 (137)
T ss_pred CCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCH-HHhCccEEEEEEEe
Confidence 3578999999999999998 88899999999863 36789999999999999999999864 34556899999999
Q ss_pred CCCCCCCCceeEEEEEeCccc
Q 046822 79 ERRSSNSRNFLGKVRAPCSQL 99 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l 99 (971)
++..+ ++++||++.++....
T Consensus 91 ~~~~~-~~~~lG~v~ig~~~~ 110 (137)
T cd08409 91 SGGVR-KSKLLGRVVLGPFMY 110 (137)
T ss_pred CCCCC-CcceEEEEEECCccc
Confidence 99876 799999999986543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=132.27 Aligned_cols=107 Identities=31% Similarity=0.542 Sum_probs=92.3
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|+|+|++|+||+..+..+.+||||+|.+.+ +.++|++++++.||.|||+|.|.+...+ ....|.|.|||
T Consensus 11 ~~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~--~~~~l~v~v~d 88 (131)
T cd04026 11 KDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD--KDRRLSIEVWD 88 (131)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh--cCCEEEEEEEE
Confidence 3478999999999999998889999999999963 5799999999999999999999987543 23689999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeC
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~ 116 (971)
++..+ ++++||++.++++++... ....||+|...
T Consensus 89 ~~~~~-~~~~iG~~~~~l~~l~~~---~~~~w~~L~~~ 122 (131)
T cd04026 89 WDRTT-RNDFMGSLSFGVSELIKM---PVDGWYKLLNQ 122 (131)
T ss_pred CCCCC-CcceeEEEEEeHHHhCcC---ccCceEECcCc
Confidence 99876 799999999999999743 34589999764
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=127.61 Aligned_cols=101 Identities=26% Similarity=0.377 Sum_probs=84.7
Q ss_pred CCCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCCceeEEEEEeCccccc
Q 046822 23 GEGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCK 101 (971)
Q Consensus 23 ~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~ 101 (971)
.+|.+||||+|.++++ .++|++++++.||.|||+|.|.+.+.. ...|.|.|||++.+ ++++||++.++|+++..
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~i~v~d~~~~--~d~~iG~~~v~L~~l~~ 83 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRR---KSRVTVVVKDDRDR--HDPVLGSVSISLNDLID 83 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcC---CCEEEEEEEECCCC--CCCeEEEEEecHHHHHh
Confidence 3688999999999885 579999999999999999999987653 37899999999987 69999999999999864
Q ss_pred cCCcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 102 NEGEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 102 ~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
... ....||+|+. ...|+|++++.|.+
T Consensus 84 ~~~-~~~~w~~L~~-----~~~G~i~~~~~~~p 110 (111)
T cd04052 84 ATS-VGQQWFPLSG-----NGQGRIRISALWKP 110 (111)
T ss_pred hhh-ccceeEECCC-----CCCCEEEEEEEEec
Confidence 322 3458999975 24699999998864
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-13 Score=127.94 Aligned_cols=117 Identities=21% Similarity=0.319 Sum_probs=94.2
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE------CCEEEeeecccCCC-CCeecceeEEEeeCCC-cEEEEEEEe
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY------GQKWVRTRTVVDSL-SPKWNEQYTWEVFDPC-TVITVGVFD 670 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~------g~~~~rT~~~~~~~-nP~Wne~~~~~v~~~~-~~l~i~V~D 670 (971)
.|+|+|++|+||+.++. +..+.. ||||++++ +...+||+++.++. ||.|||.|.|++..+. ..|.|+|||
T Consensus 3 ~l~v~vi~a~~L~~~~~-~~~~~~-dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d 80 (128)
T cd00275 3 TLTIKIISGQQLPKPKG-DKGSIV-DPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYD 80 (128)
T ss_pred EEEEEEEeeecCCCCCC-CCCCcc-CCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEe
Confidence 68999999999997642 135677 99999998 34569999988776 9999999999998765 479999999
Q ss_pred CCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 671 NCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 671 ~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
++.. +|++||.+.++|++|..+. .+++|....... ...|.|.+.+++
T Consensus 81 ~~~~----------~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~-~~~~~l~v~~~~ 127 (128)
T cd00275 81 EDSG----------DDDFLGQACLPLDSLRQGY---RHVPLLDSKGEP-LELSTLFVHIDI 127 (128)
T ss_pred CCCC----------CCcEeEEEEEEhHHhcCce---EEEEecCCCCCC-CcceeEEEEEEE
Confidence 9732 7899999999999997764 678888654432 234889988876
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.7e-14 Score=134.88 Aligned_cols=104 Identities=18% Similarity=0.287 Sum_probs=87.0
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-----CEEEeeecccCCCCCeecceeEEEeeCC---CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-----QKWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-----~~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i 666 (971)
...|.|.|+|++|+||++++. .|.+ ||||++.+. ....+|+++.+++||.|||.|.|++... ...|.|
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~d~---~~~~-DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~ 85 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAMDA---NGYS-DPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEI 85 (133)
T ss_pred CCCCEEEEEEEEEcCCCCcCC---CCCC-CcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEE
Confidence 456899999999999998654 6788 999999984 2358999999999999999999998753 358999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
+|||++..+ +|++||.+.+++... +....+||++..
T Consensus 86 ~V~d~d~~~---------~~~~lG~~~i~l~~~--~~~~~~W~~~l~ 121 (133)
T cd08384 86 TVWDKDIGK---------SNDYIGGLQLGINAK--GERLRHWLDCLK 121 (133)
T ss_pred EEEeCCCCC---------CccEEEEEEEecCCC--CchHHHHHHHHh
Confidence 999998664 899999999999863 344478998874
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.7e-14 Score=133.73 Aligned_cols=104 Identities=23% Similarity=0.299 Sum_probs=85.9
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE--CC---EEEeeecccCCCCCeecceeEEEeeC--C-CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY--GQ---KWVRTRTVVDSLSPKWNEQYTWEVFD--P-CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~--g~---~~~rT~~~~~~~nP~Wne~~~~~v~~--~-~~~l~i 666 (971)
+..|.|.|+|++|+||+.++ ..|.+ ||||++.+ ++ ...||++++++.||.|||.|.|.+.. . ...|.|
T Consensus 12 ~~~~~L~v~vi~a~~L~~~~---~~g~~-dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~ 87 (136)
T cd08405 12 PTANRITVNIIKARNLKAMD---INGTS-DPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLII 87 (136)
T ss_pred CCCCeEEEEEEEeeCCCccc---cCCCC-CceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEE
Confidence 44578999999999998764 37788 99999998 32 24789999999999999999999863 2 348999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
+|||++.++ +|++||++.+++.+. +....+|+++..
T Consensus 88 ~v~d~~~~~---------~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 88 TVMDKDRLS---------RNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred EEEECCCCC---------CCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 999999775 889999999999986 344477887764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.49 E-value=5e-13 Score=127.32 Aligned_cols=118 Identities=22% Similarity=0.271 Sum_probs=90.1
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC--C-----------EEEeeecccCCCCCee-cceeEEEeeCCCcEE
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG--Q-----------KWVRTRTVVDSLSPKW-NEQYTWEVFDPCTVI 664 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g--~-----------~~~rT~~~~~~~nP~W-ne~~~~~v~~~~~~l 664 (971)
...|.+++|+||+ . +..|++ ||||++.+. + +.+||+++++++||.| ||.|.|.+. ....|
T Consensus 2 ~~~~~~~~A~~L~-~---~~fg~~-DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-K---GMFFNP-DPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVL 75 (137)
T ss_pred EEEEEEEEeCCCC-C---ccCCCC-CceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEE
Confidence 3578999999997 3 347888 999999983 2 3689999999999999 999999985 45689
Q ss_pred EEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCC---ceEeeeEeceecCCCCcccceEEEEEE
Q 046822 665 TVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESD---RVYTHSYPLLMLHPSGVKKMGELHLAV 729 (971)
Q Consensus 665 ~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~---~~~~~~~~L~~~~~~g~~~~G~i~l~~ 729 (971)
.|+|||++..+ ....+++||++.|+|++|..+ .....||+|......+ .-.|+|.|.+
T Consensus 76 ~v~V~D~~~~~------~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s-~v~G~~~l~~ 136 (137)
T cd08691 76 EIEVKDKFAKS------RPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTD-HVSGQLTFRF 136 (137)
T ss_pred EEEEEecCCCC------CccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCC-cEEEEEEEEe
Confidence 99999986322 111379999999999998643 2346789887443322 2358888765
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-13 Score=125.95 Aligned_cols=97 Identities=25% Similarity=0.316 Sum_probs=82.3
Q ss_pred CCcccCcEEEEEECCE-EEeeecccCCCCCeecceeEEEeeCC-CcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEc
Q 046822 619 KGGSVDAYCVAKYGQK-WVRTRTVVDSLSPKWNEQYTWEVFDP-CTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRL 696 (971)
Q Consensus 619 ~g~s~dpy~~~~~g~~-~~rT~~~~~~~nP~Wne~~~~~v~~~-~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l 696 (971)
.|++ ||||++.++++ ..+|+++.++.||.|||.|.|.+.++ ...|.|.|||++.+ +|++||++.++|
T Consensus 10 ~G~~-dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~----------~d~~iG~~~v~L 78 (111)
T cd04052 10 TGLL-SPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR----------HDPVLGSVSISL 78 (111)
T ss_pred CCCC-CceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC----------CCCeEEEEEecH
Confidence 6788 99999999875 57999999999999999999999875 45899999999843 689999999999
Q ss_pred ccccC-CceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 697 STLES-DRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 697 ~~l~~-~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
+++.. +.....||+|.. ++.|+|++++.|+
T Consensus 79 ~~l~~~~~~~~~w~~L~~------~~~G~i~~~~~~~ 109 (111)
T cd04052 79 NDLIDATSVGQQWFPLSG------NGQGRIRISALWK 109 (111)
T ss_pred HHHHhhhhccceeEECCC------CCCCEEEEEEEEe
Confidence 99843 344578999973 2359999999886
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.3e-13 Score=121.35 Aligned_cols=87 Identities=24% Similarity=0.502 Sum_probs=68.1
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-----EEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCC
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-----KWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSL 674 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-----~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~ 674 (971)
|.|+|++|+||+ |.+ ||||++.++. ..+||+++.+|+||+|||.|.|++.. ...|.+.|||++.-
T Consensus 1 L~V~V~~A~~L~--------~~s-DPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK--------QSA-NLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC--------CCC-CCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccc
Confidence 679999999994 457 9999999842 35999999999999999999999974 66999999998310
Q ss_pred CccccCCCCCCCceeEEEEEEccc
Q 046822 675 DKNIINNSGGRDSRIGKVRIRLST 698 (971)
Q Consensus 675 ~~~~~~~~~~~d~~iG~~~i~l~~ 698 (971)
. .-.+..++|++||++.|.|..
T Consensus 71 ~--~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 71 K--VKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred c--ccccccCcccEEEEEEEEECH
Confidence 0 000122489999888888754
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.1e-13 Score=126.95 Aligned_cols=117 Identities=23% Similarity=0.369 Sum_probs=96.3
Q ss_pred eEEEEEEEEeeCCCCCC--CCCCCCcEEEEEEc------CeEEEeecccCCC-CCeeeeeeEEecCCCCCCCcceEEEEE
Q 046822 6 EKLVVEVIAAHNLMPKD--GEGSSSPFVEVEFE------KQILRTQVKYKDL-NPIWNEKLVFDVPDIAELPYKHIEVNV 76 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d--~~g~~dPyv~v~~~------~~~~~T~~~~~t~-nP~wne~f~f~v~~~~~l~~~~L~i~V 76 (971)
..|+|+|++|+||+..+ ..+.+||||++++. ..+++|+++.++. ||.|||+|.|.+..++ ...|.|+|
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~---~~~l~~~V 78 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE---LAFLRFVV 78 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC---eEEEEEEE
Confidence 57999999999999888 57899999999994 4568999988765 9999999999987554 25799999
Q ss_pred EeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 77 FNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 77 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
||.+.. ++++||++.++++++.. + ..|++|..........|.|.+++.+
T Consensus 79 ~d~~~~--~~~~iG~~~~~l~~l~~--g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 79 YDEDSG--DDDFLGQACLPLDSLRQ--G---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EeCCCC--CCcEeEEEEEEhHHhcC--c---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 999986 68999999999999842 1 2678887665444567999988865
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-13 Score=176.50 Aligned_cols=117 Identities=26% Similarity=0.458 Sum_probs=102.0
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE-EEeeecccCCCCCeecceeEEEeeCCC--cEEEEEEEeCC
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-WVRTRTVVDSLSPKWNEQYTWEVFDPC--TVITVGVFDNC 672 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-~~rT~~~~~~~nP~Wne~~~~~v~~~~--~~l~i~V~D~~ 672 (971)
-.|.|.|+|++|+||. +. .|++ ||||++.+|++ ..||++++++.||+|||.|+|.+.+|. .+|+|+|||+|
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~---~~~s-dPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QS---MGNT-NAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred CCcceEEEEeeccccc--cc---cCCC-CCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 4799999999999997 21 5888 99999999955 789999999999999999999999876 58999999999
Q ss_pred CCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceE---EEEEEEEe
Q 046822 673 SLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGE---LHLAVRFS 732 (971)
Q Consensus 673 ~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~---i~l~~~f~ 732 (971)
.|+ ++.||++.|+|.++..++.+..||+|... | +|.|+ |+++++++
T Consensus 2052 ~f~----------kd~~G~~~i~l~~vv~~~~~~~~~~L~~~---~-~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2052 TFG----------KSSLGKVTIQIDRVVMEGTYSGEYSLNPE---S-NKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred ccC----------CCCCceEEEEHHHHhcCceeeeeeecCcc---c-ccCCCcceEEEEEEec
Confidence 874 45999999999999999999999999832 2 34587 99999876
|
|
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-13 Score=132.20 Aligned_cols=108 Identities=31% Similarity=0.469 Sum_probs=91.3
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe-----EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-----ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~-----~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+..+..+.+||||++.+.+. .++|+++.++.||.|||+|.|.+... .+....|.|+|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~-~l~~~~l~~~v~d 90 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAE-QLEEVSLVITVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHH-HhCCcEEEEEEEe
Confidence 46789999999999999988889999999999743 67999999999999999999998753 2345789999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
.+.++ ++++||++.+++++ . .....+|++|....
T Consensus 91 ~~~~~-~~~~lG~~~i~l~~-~---~~~~~~W~~l~~~~ 124 (134)
T cd00276 91 KDSVG-RNEVIGQVVLGPDS-G---GEELEHWNEMLASP 124 (134)
T ss_pred cCCCC-CCceeEEEEECCCC-C---CcHHHHHHHHHhCC
Confidence 99875 79999999999999 2 23346899987653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-13 Score=131.44 Aligned_cols=104 Identities=24% Similarity=0.320 Sum_probs=85.0
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC--C---EEEeeecccCCCCCeecceeEEEeeCC---CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG--Q---KWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g--~---~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i 666 (971)
+..|.|+|+|++|++|++++. .|.+ ||||++.++ + ...+|+++.+++||.|||.|.|.+... ...|.|
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~---~g~~-dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~ 86 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDI---TGFS-DPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLII 86 (134)
T ss_pred CCCCEEEEEEEEeeCCCcccc---CCCC-CceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 456899999999999998654 7888 999999983 2 257899999999999999999998642 237999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
+|||++.++ ++++||++.|++... +...++|+.+..
T Consensus 87 ~v~d~~~~~---------~~~~IG~~~l~~~~~--~~~~~~w~~~~~ 122 (134)
T cd08403 87 AVVDYDRVG---------HNELIGVCRVGPNAD--GQGREHWNEMLA 122 (134)
T ss_pred EEEECCCCC---------CCceeEEEEECCCCC--CchHHHHHHHHH
Confidence 999999775 899999999998844 333478887763
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-13 Score=131.34 Aligned_cols=105 Identities=28% Similarity=0.368 Sum_probs=88.2
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-----EEEeeecccCCCCCeecceeEEEeeCC---CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-----KWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-----~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i 666 (971)
+..+.|.|.|++|+||+..+ ..|.+ ||||++.+.+ ...+|+++.++.||.|||.|.|.+... ...|.|
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~---~~~~~-dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~ 86 (134)
T cd00276 11 PTAERLTVVVLKARNLPPSD---GKGLS-DPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVI 86 (134)
T ss_pred CCCCEEEEEEEEeeCCCCcc---CCCCC-CcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEE
Confidence 34578999999999999764 36777 9999999843 257999999999999999999998764 468999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceec
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLML 714 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~ 714 (971)
+|||.+.++ ++++||.+.+++++ .+...++|++|...
T Consensus 87 ~v~d~~~~~---------~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 87 TVVDKDSVG---------RNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred EEEecCCCC---------CCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 999998654 89999999999999 45556899999854
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.6e-13 Score=126.47 Aligned_cols=91 Identities=22% Similarity=0.271 Sum_probs=81.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECCeE--EEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEEEEe
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQF--LKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVED 506 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~~~--~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d 506 (971)
+|+|.|++|++|..+|.. +.+||||+++++++. .||+++ +++.||.|||.|.|.+..+..+.|.|+|||
T Consensus 1 ~lrV~Vi~a~~L~~~d~~----g~~DPYv~v~~~~~~~~~kT~~v-----~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d 71 (124)
T cd04037 1 LVRVYVVRARNLQPKDPN----GKSDPYLKIKLGKKKINDRDNYI-----PNTLNPVFGKMFELEATLPGNSILKISVMD 71 (124)
T ss_pred CEEEEEEECcCCCCCCCC----CCCCcEEEEEECCeeccceeeEE-----ECCCCCccceEEEEEecCCCCCEEEEEEEE
Confidence 379999999999999987 899999999998865 567777 789999999999999887777899999999
Q ss_pred CcCCCCCceeEEEEEecccccc
Q 046822 507 HVGPGKDEIVGKVLIPVSAVER 528 (971)
Q Consensus 507 ~d~~~~d~~iG~~~i~L~~l~~ 528 (971)
++..+++++||++.++|.+...
T Consensus 72 ~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 72 YDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCCCCCceeEEEEEeeccccc
Confidence 9988899999999999987653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.1e-14 Score=148.06 Aligned_cols=104 Identities=29% Similarity=0.448 Sum_probs=89.6
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-----CCEEEeeecccCCCCCeecceeEEEee--CCCcEEEEEEEe
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-----GQKWVRTRTVVDSLSPKWNEQYTWEVF--DPCTVITVGVFD 670 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-----g~~~~rT~~~~~~~nP~Wne~~~~~v~--~~~~~l~i~V~D 670 (971)
..|.|.|.+|+||.+||. +|-| ||||.+++ +..+.+|+|++.++||+|||+|+|.+. |....|.|+|||
T Consensus 180 ~~l~v~i~ea~NLiPMDp---NGlS-DPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWD 255 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDP---NGLS-DPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWD 255 (683)
T ss_pred ceEEEEehhhccccccCC---CCCC-CcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEec
Confidence 368999999999999865 8999 99999998 244689999999999999999999987 445589999999
Q ss_pred CCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecC
Q 046822 671 NCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLH 715 (971)
Q Consensus 671 ~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~ 715 (971)
||+.+ ++||+|...+.+++|.... ...||.|.+..
T Consensus 256 WDrTs---------RNDFMGslSFgisEl~K~p-~~GWyKlLsqe 290 (683)
T KOG0696|consen 256 WDRTS---------RNDFMGSLSFGISELQKAP-VDGWYKLLSQE 290 (683)
T ss_pred ccccc---------cccccceecccHHHHhhcc-hhhHHHHhhhh
Confidence 99664 9999999999999997543 37899888643
|
|
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.6e-13 Score=127.41 Aligned_cols=106 Identities=21% Similarity=0.323 Sum_probs=84.3
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE--CC---EEEeeecccCCCCCeecceeEEEeeC--CC-cEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY--GQ---KWVRTRTVVDSLSPKWNEQYTWEVFD--PC-TVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~--g~---~~~rT~~~~~~~nP~Wne~~~~~v~~--~~-~~l~i 666 (971)
+..|.|.|+|++|++|+.++. .|.+ ||||++.+ |. ...+|+++++++||.|||.|.|.+.. .. ..|.|
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~---~g~~-DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~ 86 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDM---SQGS-DPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVF 86 (135)
T ss_pred CCCCeEEEEEEEecCCCcccC---CCCC-CeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEE
Confidence 556899999999999998654 6788 99999997 32 34789999999999999999999863 22 37999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceec
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLML 714 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~ 714 (971)
+|||+|..+ +|++||++.|....... ....+|+.+...
T Consensus 87 ~V~d~d~~~---------~~~~iG~~~l~~~~~~~-~~~~~W~~l~~~ 124 (135)
T cd08410 87 TVYGHNVKS---------SNDFIGRIVIGQYSSGP-SETNHWRRMLNS 124 (135)
T ss_pred EEEeCCCCC---------CCcEEEEEEEcCccCCc-hHHHHHHHHHhC
Confidence 999999665 89999999977654432 223678887743
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.3e-13 Score=126.20 Aligned_cols=98 Identities=26% Similarity=0.351 Sum_probs=82.2
Q ss_pred EEEEeeCCCCCCCCCCCCcEEEEEEcCe-------EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCC--
Q 046822 11 EVIAAHNLMPKDGEGSSSPFVEVEFEKQ-------ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERR-- 81 (971)
Q Consensus 11 ~V~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~-- 81 (971)
-.++|++|+.++..|.+||||++.+.+. .++|+++++++||.|||+|.|.+.... ...|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~---~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE---VQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEe---eeEEEEEEEEecCCc
Confidence 4588999999999999999999999865 489999999999999999999865333 2689999999997
Q ss_pred --CCCCCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 82 --SSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 82 --~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
.+ ++++||++.+++.++..... ...|++|.
T Consensus 82 ~~~~-~~d~iG~~~i~l~~l~~~~~--~~~~~~l~ 113 (120)
T cd04048 82 KDLS-DHDFLGEAECTLGEIVSSPG--QKLTLPLK 113 (120)
T ss_pred CCCC-CCcEEEEEEEEHHHHhcCCC--cEEEEEcc
Confidence 55 79999999999999975432 33578883
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.1e-13 Score=125.70 Aligned_cols=101 Identities=17% Similarity=0.222 Sum_probs=81.6
Q ss_pred EEEeeeCCCCCCccCCCCcccCcEEEEEECCE-------EEeeecccCCCCCeecceeEEEee-CCCcEEEEEEEeCCCC
Q 046822 603 GILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-------WVRTRTVVDSLSPKWNEQYTWEVF-DPCTVITVGVFDNCSL 674 (971)
Q Consensus 603 ~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-------~~rT~~~~~~~nP~Wne~~~~~v~-~~~~~l~i~V~D~~~~ 674 (971)
-.++|++|+..+ ..|++ ||||++.+++. .+||+++++++||.|||.|.|.+. +....|.|+|||+|..
T Consensus 5 ~~i~a~~L~~~d---~~g~~-DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~ 80 (120)
T cd04048 5 LSISCRNLLDKD---VLSKS-DPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSK 80 (120)
T ss_pred EEEEccCCCCCC---CCCCC-CcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCC
Confidence 357899998764 47888 99999999543 489999999999999999999865 3555899999999961
Q ss_pred CccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 675 DKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 675 ~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
+ ...++|++||++.+++++|..+.....+++|.
T Consensus 81 ~-----~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 81 S-----KDLSDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred c-----CCCCCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 0 00138999999999999998766567788884
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=119.14 Aligned_cols=81 Identities=17% Similarity=0.336 Sum_probs=69.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC---
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE--- 79 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~--- 79 (971)
|.|+|++|+||+ +.+||||++.+++ ..++|+++++|+||+|||+|+|.+.. . ..|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s----~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-S----QTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-C----CEEEEEEEEcccc
Confidence 689999999995 5699999999963 36899999999999999999999874 3 7999999998
Q ss_pred ----CCCCCCCceeEEEEEeCccc
Q 046822 80 ----RRSSNSRNFLGKVRAPCSQL 99 (971)
Q Consensus 80 ----~~~~~~d~~lG~~~i~l~~l 99 (971)
+..+ +|+++|++.+.|+.-
T Consensus 71 ~~~~d~~~-~d~~~G~g~i~Ld~~ 93 (118)
T cd08686 71 KVKLDGEG-TDAIMGKGQIQLDPQ 93 (118)
T ss_pred cccccccC-cccEEEEEEEEECHH
Confidence 3444 799998888877654
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.2e-13 Score=155.37 Aligned_cols=124 Identities=19% Similarity=0.312 Sum_probs=103.0
Q ss_pred eEEEEEEEEeeCCCCCCC------------------------------------------CCCCCcEEEEEEcCe-EEEe
Q 046822 6 EKLVVEVIAAHNLMPKDG------------------------------------------EGSSSPFVEVEFEKQ-ILRT 42 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~------------------------------------------~g~~dPyv~v~~~~~-~~~T 42 (971)
|.|.|+|.+|++|+.+|. .++|||||+|.++++ ..||
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT 93 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART 93 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence 678899999999985221 247899999999876 4699
Q ss_pred ecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCC-e
Q 046822 43 QVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFS-H 121 (971)
Q Consensus 43 ~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~-~ 121 (971)
+++++++||+|||+|.|.+.++. ..|.|.|||+|.++ +++||++.||+.++.. ++....|++|.+...+. +
T Consensus 94 rVi~n~~NPvWNE~F~f~vah~~----s~L~f~VkD~D~~g--aD~IG~a~IPL~~L~~--Ge~vd~Wl~Ll~~~~kp~k 165 (868)
T PLN03008 94 RVLKNSQEPLWDEKFNISIAHPF----AYLEFQVKDDDVFG--AQIIGTAKIPVRDIAS--GERISGWFPVLGASGKPPK 165 (868)
T ss_pred EeCCCCCCCCcceeEEEEecCCC----ceEEEEEEcCCccC--CceeEEEEEEHHHcCC--CCceEEEEEccccCCCCCC
Confidence 99999999999999999998765 79999999999986 6999999999999865 33346899998875432 3
Q ss_pred eeeEEEEEEEeeeccc
Q 046822 122 IRGEISLKLFVSTTEE 137 (971)
Q Consensus 122 ~~G~i~l~~~~~~~~~ 137 (971)
..|+|+|++.|.+-..
T Consensus 166 ~~~kl~v~lqf~pv~~ 181 (868)
T PLN03008 166 AETAIFIDMKFTPFDQ 181 (868)
T ss_pred CCcEEEEEEEEEEccc
Confidence 4689999999987554
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-13 Score=150.40 Aligned_cols=124 Identities=34% Similarity=0.574 Sum_probs=109.1
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCC--
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRS-- 82 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~-- 82 (971)
+..+.++|+.|++|.++|..|++||||.+.++..++||+++...+||+|||.|+|...+.. ..+.+.|||.|..
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnst----drikvrvwded~dlk 369 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNST----DRIKVRVWDEDNDLK 369 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCC----ceeEEEEecCcccHH
Confidence 4578999999999999999999999999999999999999999999999999999998765 7999999998753
Q ss_pred --------CCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeecc
Q 046822 83 --------SNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTTE 136 (971)
Q Consensus 83 --------~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 136 (971)
..+|+|||+..|.+.++. +++ .-||.|+++..++.+.|.|++.+...-.+
T Consensus 370 sklrqkl~resddflgqtvievrtls---gem-dvwynlekrtdksavsgairlhisveikg 427 (1283)
T KOG1011|consen 370 SKLRQKLTRESDDFLGQTVIEVRTLS---GEM-DVWYNLEKRTDKSAVSGAIRLHISVEIKG 427 (1283)
T ss_pred HHHHHHhhhcccccccceeEEEEecc---cch-hhhcchhhccchhhccceEEEEEEEEEcC
Confidence 125899999999999984 333 47999999999999999999888775443
|
|
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.5e-13 Score=125.20 Aligned_cols=97 Identities=30% Similarity=0.450 Sum_probs=83.2
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc-----CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE-----KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|+|+|++|++|+..+..+.+||||++.+. ...++|++++++.||.|||+|.|......++.+..|.|+|||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 467899999999999999888899999999984 247899999999999999999997443334445789999999
Q ss_pred CCCCCCCCceeEEEEEeCcccccc
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKN 102 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~ 102 (971)
++.+ ++++||++.++++++...
T Consensus 93 ~~~~--~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 93 EDRF--GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred cCCc--CCeeEEEEEEEcccCCCC
Confidence 9986 589999999999999643
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-12 Score=122.29 Aligned_cols=96 Identities=26% Similarity=0.353 Sum_probs=79.5
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-----CEEEeeecccCCCCCeecceeEEEeeCC----CcEEEEE
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-----QKWVRTRTVVDSLSPKWNEQYTWEVFDP----CTVITVG 667 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-----~~~~rT~~~~~~~nP~Wne~~~~~v~~~----~~~l~i~ 667 (971)
.+.|+|+|++|++|+..+. .|.+ ||||++.+. ....||+++.++.||.|||.|.|..... ...|.|+
T Consensus 14 ~~~L~V~v~~a~~L~~~~~---~~~~-dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~ 89 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDA---NGLS-DPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLL 89 (123)
T ss_pred CCEEEEEEEEeeCCCCCCC---CCCC-CceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEE
Confidence 4689999999999987643 6778 999999972 2468999999999999999999974432 3589999
Q ss_pred EEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEe
Q 046822 668 VFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYT 706 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~ 706 (971)
|||++.+ .+++||++.++|++|..+....
T Consensus 90 v~d~~~~----------~~~~iG~~~i~l~~l~~~~~~~ 118 (123)
T cd04035 90 VLDEDRF----------GNDFLGETRIPLKKLKPNQTKQ 118 (123)
T ss_pred EEEcCCc----------CCeeEEEEEEEcccCCCCcceE
Confidence 9999843 5899999999999998776433
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-12 Score=121.12 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=81.4
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE--CC---EEEeeecccCCC-CCeecceeEEEeeCCC--cEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY--GQ---KWVRTRTVVDSL-SPKWNEQYTWEVFDPC--TVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~--g~---~~~rT~~~~~~~-nP~Wne~~~~~v~~~~--~~l~i 666 (971)
+..|.|.|.|++|+||+++. + .+.. ||||++.+ ++ .+.+|+++++++ ||.|||.|.|+|.... ..|.|
T Consensus 11 p~~~rLtV~VikarnL~~~~--~-~~~~-dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v 86 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSS--T-PLTL-SFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLI 86 (135)
T ss_pred CcCCeEEEEEEEccCCCccc--C-CCCC-CcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEE
Confidence 66789999999999999863 2 3455 99999997 22 358899999996 6999999999998532 37999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
+|||++..+ ++++||++.+..+... +...++|....
T Consensus 87 ~v~d~~~~~---------~n~~IG~v~lG~~~~~-~~~~~hW~~m~ 122 (135)
T cd08692 87 KLYSRSSVR---------RKHFLGQVWISSDSSS-SEAVEQWKDTI 122 (135)
T ss_pred EEEeCCCCc---------CCceEEEEEECCccCC-chhhhhHHHHH
Confidence 999998665 8999999999997642 22236776655
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.9e-13 Score=127.97 Aligned_cols=105 Identities=19% Similarity=0.316 Sum_probs=85.8
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC--C---EEEeeecccCCCCCeecceeEEEeeC--CC-cEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG--Q---KWVRTRTVVDSLSPKWNEQYTWEVFD--PC-TVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g--~---~~~rT~~~~~~~nP~Wne~~~~~v~~--~~-~~l~i 666 (971)
+..+.|.|+|++|+||++.+ .|.+ ||||++.+. . ...||++++++.||.|||.|.|.+.. .. ..|.|
T Consensus 12 ~~~~~L~V~V~~a~nL~~~~----~~~~-d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~ 86 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQLD----HAHT-SVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSL 86 (137)
T ss_pred CCCCeEEEEEEEecCCCccc----CCCC-CeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEE
Confidence 34578999999999998764 4667 999999973 2 35789999999999999999999963 23 48999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
+|||.+.++ ++++||++.|.......+...++|..+..
T Consensus 87 ~V~~~~~~~---------~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 87 SVMQSGGVR---------KSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EEEeCCCCC---------CcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 999999654 89999999999876666666678887763
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-13 Score=141.39 Aligned_cols=218 Identities=16% Similarity=0.224 Sum_probs=155.4
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
++.++..++..|++|.+++.++..|||+.+.++. .+.+|++..+++||.|||+-.......+......+++.|.|
T Consensus 91 ~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcd 170 (362)
T KOG1013|consen 91 ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCD 170 (362)
T ss_pred hhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeecc
Confidence 4567899999999999999999999999999973 36889999999999999987776444444556788999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeecccccccCCCCCCCCCCccccccc
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTTEEVVKKGGFVSSLTPSSAFSKKN 158 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~e~~~~~~~~~k~~ 158 (971)
.+.+. .++++|+..+++..+..........|+.-.-+ .. . +
T Consensus 171 n~~~~-~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp-------------------~~---------r---a------- 211 (362)
T KOG1013|consen 171 NDKKT-HNESQGQSRVSLKKLKPLQRKSFNICLEKSLP-------------------SE---------R---A------- 211 (362)
T ss_pred Ccccc-cccCcccchhhhhccChhhcchhhhhhhccCC-------------------cc---------c---c-------
Confidence 99986 78999999998888854332221112111100 00 0 0
Q ss_pred cccccCCCcccccccccCCCCCCCCCccccCccCcCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCCCCccCC
Q 046822 159 KKLQQQSPVMQVQQQHFGHQDMMSKPTHQQQSQNHVKPMEPNPGELKPVVITTAPRPVIPGARGGPTFGGGGGGGVYVNG 238 (971)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 238 (971)
+ ...+|+.+ .++.
T Consensus 212 d-----------------------------~~~~E~rg-------------------~i~i------------------- 224 (362)
T KOG1013|consen 212 D-----------------------------RDEDEERG-------------------AILI------------------- 224 (362)
T ss_pred c-----------------------------ccchhhcc-------------------ceee-------------------
Confidence 0 00000000 0000
Q ss_pred CCCcccccCCCCCCCCCCcccccccccccccceeEEEEEEEEeecCC---CCCCCCeEEEEEECC-----eeeeeeeecC
Q 046822 239 SGEFSLKETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDIS---LFGGGEIVAEVKLGN-----YRGITKRVSS 310 (971)
Q Consensus 239 ~~~~~~~~~~p~~~~~~~~~~~~~~~~d~v~~~~~L~V~v~~a~~L~---~~~~~dpyV~v~~~~-----~~~kT~~~~~ 310 (971)
..++......|.|.+++|.+|. .+|.+||||..++.. .+.+|.+.++
T Consensus 225 -------------------------sl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~ 279 (362)
T KOG1013|consen 225 -------------------------SLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK 279 (362)
T ss_pred -------------------------eeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc
Confidence 0111111255888999999988 778999999999862 5778999999
Q ss_pred C-CCccccEEEEecc--CCCcceEEEEEecC---CCCcccEEEEEEcc
Q 046822 311 N-HLQWDQVFAFSKD--CIQSSAAEIFVKES---DKDDFLGRIWFDLN 352 (971)
Q Consensus 311 ~-nP~wne~f~f~~~--~~~~~~l~v~v~D~---~~d~~lG~~~i~l~ 352 (971)
+ ||+||+.|.|.+. ++....+.|.|||. ...+++|-+...+.
T Consensus 280 t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 280 TLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred cCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc
Confidence 9 9999999999887 45667899999998 58899988776543
|
|
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-12 Score=122.50 Aligned_cols=105 Identities=13% Similarity=0.205 Sum_probs=85.2
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC---C---EEEeeecccCCCCCeecceeEEEeeC---CCcEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---Q---KWVRTRTVVDSLSPKWNEQYTWEVFD---PCTVIT 665 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g---~---~~~rT~~~~~~~nP~Wne~~~~~v~~---~~~~l~ 665 (971)
...+.|.|+|++|+||++++ ..|.+ ||||++.+. + .+.||++++++.||+|||.|.|++.. ....|.
T Consensus 12 ~~~~~L~V~VikarnL~~~~---~~~~~-dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~ 87 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNLA---MNKAP-DTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLM 87 (138)
T ss_pred CCCCeEEEEEEEecCCCccc---cCCCC-CeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEE
Confidence 45689999999999999864 36778 999999983 2 24799999999999999999999973 334899
Q ss_pred EEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 666 VGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 666 i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
|+|||.+.++ ++++||++.+++.....+ ...+|+.+..
T Consensus 88 ~~V~~~~~~~---------~~~~iG~v~l~~~~~~~~-~~~hW~~~l~ 125 (138)
T cd08408 88 FSVYNKRKMK---------RKEMIGWFSLGLNSSGEE-EEEHWNEMKE 125 (138)
T ss_pred EEEEECCCCC---------CCcEEEEEEECCcCCCch-HHHHHHHHHh
Confidence 9999999765 899999999999865432 2257877753
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.6e-12 Score=139.06 Aligned_cols=245 Identities=20% Similarity=0.228 Sum_probs=162.5
Q ss_pred eEEEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEEEEeCcCC----CCCceeEEEEEecccccccccccccccee
Q 046822 464 QFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGP----GKDEIVGKVLIPVSAVERRTDDKQVVSRW 539 (971)
Q Consensus 464 ~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d~d~~----~~d~~iG~~~i~L~~l~~~~~~~~~~~~w 539 (971)
+..||.++ .+.+||.|.+.|.+.+..+..|.|++.++|.+.. ...+|+|++...++.+......+ .-
T Consensus 41 e~~rte~i-----~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~----~~ 111 (529)
T KOG1327|consen 41 EVGRTEVI-----RNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLT----GP 111 (529)
T ss_pred cccceeee-----eccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhh----hh
Confidence 46688998 8999999999999999999999999999997653 45789999999999887553110 00
Q ss_pred EEcccCCCCCCCcceeeeeeeeeEEEEEccCcccccCccccccCCCcccccccCCCceeEEEEEEEeeeCCCCCCccCCC
Q 046822 540 FNLENHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEATLYSSDVKPTAKQLWKPHIGVLEMGILGATGLMPMKFKEGK 619 (971)
Q Consensus 540 ~~L~~~~~~~~~~~~~~~~~g~i~l~l~l~~~~~~~~~~~~~~sd~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~~~~ 619 (971)
..++... ....|.|.+.+. +..+ . -....-..+|.+|.. +|..
T Consensus 112 l~~~~~~---------~~~~g~iti~ae--e~~~---------~--------------~~~~~~~~~~~~ld~---kd~f 154 (529)
T KOG1327|consen 112 LLLKPGK---------NAGSGTITISAE--EDES---------D--------------NDVVQFSFRAKNLDP---KDFF 154 (529)
T ss_pred hhcccCc---------cCCcccEEEEee--cccc---------c--------------CceeeeeeeeeecCc---cccc
Confidence 1222111 011344544432 1110 0 011122345788865 4669
Q ss_pred CcccCcEEEEEE--C-CE---EEeeecccCCCCCeecceeEEEee-----CCCcEEEEEEEeCCCCCccccCCCCCCCce
Q 046822 620 GGSVDAYCVAKY--G-QK---WVRTRTVVDSLSPKWNEQYTWEVF-----DPCTVITVGVFDNCSLDKNIINNSGGRDSR 688 (971)
Q Consensus 620 g~s~dpy~~~~~--g-~~---~~rT~~~~~~~nP~Wne~~~~~v~-----~~~~~l~i~V~D~~~~~~~~~~~~~~~d~~ 688 (971)
+++ |||..+.- | +. .+||.+++++++|.|. .|.++.. ++...+.|.|||++.. +++++
T Consensus 155 ~ks-d~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~---------~~~~~ 223 (529)
T KOG1327|consen 155 SKS-DPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSN---------GKHDL 223 (529)
T ss_pred ccC-CcceEEEEecCCCceeeccccceeccCCCCccc-ccccchhhhcccCCCCceEEEEeccCCC---------CCcCc
Confidence 999 99998874 2 33 3899999999999998 4555443 4556899999999954 48999
Q ss_pred eEEEEEEcccccCCceEeeeEeceecCCCCcc----cceEEEE-------------------EEEEeecchhHHHHhhcC
Q 046822 689 IGKVRIRLSTLESDRVYTHSYPLLMLHPSGVK----KMGELHL-------------------AVRFSCANLVNMLHMYAM 745 (971)
Q Consensus 689 iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~----~~G~i~l-------------------~~~f~~~~~~~~~~~~~~ 745 (971)
||++..++++++.. .....+++.+.+.+..+ ..|.+.+ .+.|+ +.+++.++|+.
T Consensus 224 ig~~~tt~~~~~~~-~~~~~~~~~~~~~~~~~k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~--vgIDfTaSNg~ 300 (529)
T KOG1327|consen 224 IGKFQTTLSELQEP-GSPNQIMLINPKKKAKKKSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFT--VGIDFTASNGD 300 (529)
T ss_pred eeEecccHHHhccc-CCcccccccChhhhhhhhcccccceEEehheeehhhhhHHHHHccCceeeeE--EEEEEeccCCC
Confidence 99999999999631 11234455543322111 1455543 12222 23344499999
Q ss_pred CCCCC-CcccCCCchhhHHHHHHH
Q 046822 746 PLLPK-MHYVHPLSVHQLETLRYQ 768 (971)
Q Consensus 746 p~~p~-~~y~~p~~~~~~~~l~~~ 768 (971)
|..|. +||++|..+++|++.-..
T Consensus 301 p~~~sSLHyi~p~~~N~Y~~Ai~~ 324 (529)
T KOG1327|consen 301 PRNPSSLHYIDPHQPNPYEQAIRS 324 (529)
T ss_pred CCCCCcceecCCCCCCHHHHHHHH
Confidence 99877 999999888888765443
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-12 Score=117.88 Aligned_cols=94 Identities=20% Similarity=0.236 Sum_probs=76.0
Q ss_pred EEEEeeeCCCCCCccCCCCcccCcEEEEEECC------EEEeeecccCCCCCeecceeEEEeeC-----CCcEEEEEEEe
Q 046822 602 MGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ------KWVRTRTVVDSLSPKWNEQYTWEVFD-----PCTVITVGVFD 670 (971)
Q Consensus 602 v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~------~~~rT~~~~~~~nP~Wne~~~~~v~~-----~~~~l~i~V~D 670 (971)
+-.++|++|+.++ ..|++ ||||++.+++ ..++|+++++++||.|| .|.|++.+ +...|.|+|||
T Consensus 4 ~~~i~a~~L~~~d---~~~~~-DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d 78 (110)
T cd04047 4 ELQFSGKKLDKKD---FFGKS-DPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYD 78 (110)
T ss_pred EEEEEeCCCCCCC---CCCCC-CeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEE
Confidence 3456899998765 47888 9999999843 24899999999999999 78887643 25699999999
Q ss_pred CCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEec
Q 046822 671 NCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPL 711 (971)
Q Consensus 671 ~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 711 (971)
++.++ +|++||++.+++++|..++ ..++.+
T Consensus 79 ~d~~~---------~d~~iG~~~~~l~~l~~~~--~~~~~~ 108 (110)
T cd04047 79 YDSSG---------KHDLIGEFETTLDELLKSS--PLEFEL 108 (110)
T ss_pred eCCCC---------CCcEEEEEEEEHHHHhcCC--CceEEe
Confidence 99775 8999999999999997554 345554
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.9e-13 Score=136.68 Aligned_cols=230 Identities=16% Similarity=0.171 Sum_probs=163.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECC-----eEEEeeecCCCCCCCCCCCcccceeEE--EeecCC-CCeE
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGN-----QFLKTRIAAPSATRSLSNPCWNEDLLF--VVAEPF-EDYL 500 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~-----~~~rT~~~~~~~~~~~~nP~w~e~f~f--~~~~~~-~~~L 500 (971)
.+..++.+|++|++++.+ +..|||++..++. ..+||++. .+++||.|+|.... ...++. ...+
T Consensus 94 ~~~~tl~~a~~lk~~~~~----~~~d~~~~~~llpga~kl~slr~~t~-----~n~lN~~w~etev~~~i~~~~~~~K~~ 164 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDIN----GLADPYVKLHLLPGAGKLNSLRTKTT-----RNTLNPEWNETEVYEGITDDDTHLKVL 164 (362)
T ss_pred hcceeechhcccchhhhh----hhcchHHhhhcccchhhhhhhhHHhh-----ccCcCcceeccceecccccchhhhhhh
Confidence 467889999999999999 8999999999852 45788888 89999999998543 333332 3478
Q ss_pred EEEEEeCcCCCCCceeEEEEEeccccccccccccccceeEEcccCCCCCCCcceeeeeeeeeEEEEEccCcccccCcccc
Q 046822 501 LISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEATL 580 (971)
Q Consensus 501 ~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~g~i~l~l~l~~~~~~~~~~~~ 580 (971)
++.|+|.+.+...+++|+..+++..+..++. .....|+.-..+.+ + .........|+|.+.+...
T Consensus 165 Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~--k~f~~cl~~~lp~~-r-ad~~~~E~rg~i~isl~~~----------- 229 (362)
T KOG1013|consen 165 RKVVCDNDKKTHNESQGQSRVSLKKLKPLQR--KSFNICLEKSLPSE-R-ADRDEDEERGAILISLAYS----------- 229 (362)
T ss_pred heeeccCcccccccCcccchhhhhccChhhc--chhhhhhhccCCcc-c-ccccchhhccceeeeeccC-----------
Confidence 9999999988889999999999888776542 23344444333321 0 0011123345555544211
Q ss_pred ccCCCcccccccCCCceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC---CE--EEeeecccCCCCCeecceeEE
Q 046822 581 YSSDVKPTAKQLWKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---QK--WVRTRTVVDSLSPKWNEQYTW 655 (971)
Q Consensus 581 ~~sd~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g---~~--~~rT~~~~~~~nP~Wne~~~~ 655 (971)
....-|.+++++|..|..+|. +|.+ |||+..++. ++ +.+|.+.+++++|.||++|.|
T Consensus 230 --------------s~~~~l~vt~iRc~~l~ssDs---ng~s-DpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~ 291 (362)
T KOG1013|consen 230 --------------STTPGLIVTIIRCSHLASSDS---NGYS-DPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFY 291 (362)
T ss_pred --------------cCCCceEEEEEEeeeeecccc---CCCC-CccceeecCCCcchhhcccCcchhccCCccccccccc
Confidence 223568899999999998876 7889 999999983 22 378899999999999999999
Q ss_pred EeeCCC---cEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEec
Q 046822 656 EVFDPC---TVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPL 711 (971)
Q Consensus 656 ~v~~~~---~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 711 (971)
.+.... ..+.|.|||.+.- ...+++|-+..-+.. .+....+|+..
T Consensus 292 ~i~pgdLa~~kv~lsvgd~~~G---------~s~d~~GG~~~g~~r--r~~v~~h~gr~ 339 (362)
T KOG1013|consen 292 DIGPGDLAYKKVALSVGDYDIG---------KSNDSIGGSMLGGYR--RGEVHKHWGRC 339 (362)
T ss_pred cCCccchhcceEEEeecccCCC---------cCccCCCcccccccc--cchhhcCcccc
Confidence 987432 2899999999843 367788876654433 23333455543
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-12 Score=164.01 Aligned_cols=120 Identities=17% Similarity=0.269 Sum_probs=100.1
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRS 82 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~ 82 (971)
-.|.|+|+|++|.||. +..|.+||||++.++++ +++|++++++.||+|||.|.|.+.++.. ++.|.|+|||+|.+
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~--~~~l~iev~d~d~f 2053 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPK--GQKLHISCKSKNTF 2053 (2102)
T ss_pred CCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCC--CCceEEEEEecCcc
Confidence 3689999999999998 33689999999999966 8899999999999999999988877642 36799999999998
Q ss_pred CCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeE---EEEEEEeee
Q 046822 83 SNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGE---ISLKLFVST 134 (971)
Q Consensus 83 ~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~---i~l~~~~~~ 134 (971)
+ ++.||.+.|++.++... .....||+|.+.+.+ .|. |.+.+.|.+
T Consensus 2054 ~--kd~~G~~~i~l~~vv~~--~~~~~~~~L~~~~~k---~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 G--KSSLGKVTIQIDRVVME--GTYSGEYSLNPESNK---DGSSRTLEIEFQWSN 2101 (2102)
T ss_pred C--CCCCceEEEEHHHHhcC--ceeeeeeecCccccc---CCCcceEEEEEEecC
Confidence 5 56999999999999763 334589999865433 366 999888753
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.7e-12 Score=116.63 Aligned_cols=91 Identities=24% Similarity=0.443 Sum_probs=75.4
Q ss_pred EEEEEEeeCCCCCCCCCCCCcEEEEEEcCe------EEEeecccCCCCCeeeeeeEEecCCCCCC-CcceEEEEEEeCCC
Q 046822 9 VVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ------ILRTQVKYKDLNPIWNEKLVFDVPDIAEL-PYKHIEVNVFNERR 81 (971)
Q Consensus 9 ~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~------~~~T~~~~~t~nP~wne~f~f~v~~~~~l-~~~~L~i~V~d~~~ 81 (971)
.+-.++|++|+.+|..|.+||||++.+.++ .++|+++++++||.|| .|.|.+...... ....|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 345679999999999999999999998653 5899999999999999 688875422110 13799999999999
Q ss_pred CCCCCceeEEEEEeCccccc
Q 046822 82 SSNSRNFLGKVRAPCSQLCK 101 (971)
Q Consensus 82 ~~~~d~~lG~~~i~l~~l~~ 101 (971)
.+ +|++||++.++++++..
T Consensus 82 ~~-~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 82 SG-KHDLIGEFETTLDELLK 100 (110)
T ss_pred CC-CCcEEEEEEEEHHHHhc
Confidence 86 79999999999999973
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=108.25 Aligned_cols=82 Identities=29% Similarity=0.560 Sum_probs=73.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEcC---eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCC
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEK---QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSN 84 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~ 84 (971)
|.|+|++|+||...+..+.+||||++.+.+ ..++|++++++.+|.|||+|.|.+..... ..|.|+|||.+..+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~---~~l~~~V~~~~~~~- 76 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDL---DSLSFEVWDKDSFG- 76 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCG---TEEEEEEEEETSSS-
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccc---cceEEEEEECCCCC-
Confidence 789999999999988888999999999997 67999999999999999999999765542 56999999999986
Q ss_pred CCceeEEEE
Q 046822 85 SRNFLGKVR 93 (971)
Q Consensus 85 ~d~~lG~~~ 93 (971)
+|++||++.
T Consensus 77 ~~~~iG~~~ 85 (85)
T PF00168_consen 77 KDELIGEVK 85 (85)
T ss_dssp SEEEEEEEE
T ss_pred CCCEEEEEC
Confidence 699999974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-11 Score=133.93 Aligned_cols=127 Identities=27% Similarity=0.406 Sum_probs=100.5
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCc
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDK 676 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~ 676 (971)
...+.++|+.|+||.+. |..|+| ||||.+.+|..+.||+++...+||+|||.|+|++++....|++.|||+|..-.
T Consensus 294 sakitltvlcaqgl~ak---dktg~s-dpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlk 369 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAK---DKTGKS-DPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLK 369 (1283)
T ss_pred ceeeEEeeeecccceec---ccCCCC-CCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHH
Confidence 45788999999999875 458999 99999999999999999999999999999999999999999999999984320
Q ss_pred cc--cCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEE
Q 046822 677 NI--INNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVR 730 (971)
Q Consensus 677 ~~--~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 730 (971)
.+ -.-...+|||+|+..|-+..|.... +.||.|.....+.. .+|.|+|.|.
T Consensus 370 sklrqkl~resddflgqtvievrtlsgem--dvwynlekrtdksa-vsgairlhis 422 (1283)
T KOG1011|consen 370 SKLRQKLTRESDDFLGQTVIEVRTLSGEM--DVWYNLEKRTDKSA-VSGAIRLHIS 422 (1283)
T ss_pred HHHHHHhhhcccccccceeEEEEecccch--hhhcchhhccchhh-ccceEEEEEE
Confidence 00 0012358999999999999987544 78999975433221 2577766444
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.2e-11 Score=103.07 Aligned_cols=82 Identities=32% Similarity=0.506 Sum_probs=74.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCCceEEEEEECC---eEEEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEEEEe
Q 046822 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGN---QFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVED 506 (971)
Q Consensus 430 L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~---~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d 506 (971)
|+|+|++|+||...+.. +.+||||++.+++ ..++|+++ .++.+|.|+|.|.|.+..+..+.|.|+|||
T Consensus 1 L~v~I~~a~~L~~~~~~----~~~~~yv~v~~~~~~~~~~~T~~~-----~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~ 71 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSN----GKPDPYVRVSVNGSESTKYKTKVK-----KNTSNPVWNEEFEFPLDDPDLDSLSFEVWD 71 (85)
T ss_dssp EEEEEEEEESSSSSSTT----SSBEEEEEEEEETTTCEEEEECCB-----SSBSSEEEEEEEEEEESHGCGTEEEEEEEE
T ss_pred CEEEEEEEECCCCcccC----Ccccccceeecceeeeeeeeeeee-----eccccceeeeeeeeeeecccccceEEEEEE
Confidence 68999999999987766 7999999999976 67999999 888999999999999888888889999999
Q ss_pred CcCCCCCceeEEEE
Q 046822 507 HVGPGKDEIVGKVL 520 (971)
Q Consensus 507 ~d~~~~d~~iG~~~ 520 (971)
++..+++++||++.
T Consensus 72 ~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 72 KDSFGKDELIGEVK 85 (85)
T ss_dssp ETSSSSEEEEEEEE
T ss_pred CCCCCCCCEEEEEC
Confidence 98888899999974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=135.91 Aligned_cols=126 Identities=18% Similarity=0.243 Sum_probs=106.6
Q ss_pred eeEEEEEEEeeeCCCCCCc---------------cCCCCcccCcEEEEEECCEE-EeeecccCC-CCCeecceeEEEeeC
Q 046822 597 IGVLEMGILGATGLMPMKF---------------KEGKGGSVDAYCVAKYGQKW-VRTRTVVDS-LSPKWNEQYTWEVFD 659 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~---------------~~~~g~s~dpy~~~~~g~~~-~rT~~~~~~-~nP~Wne~~~~~v~~ 659 (971)
-|.|.|+|++|++|+.++. ..+++.| |||+.+.+++.+ .||+++.+. .||.|||.|.+++..
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah 85 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGES-QLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH 85 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCC-CceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence 4899999999999986310 1235778 999999998765 699999875 699999999999999
Q ss_pred CCcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEee
Q 046822 660 PCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSC 733 (971)
Q Consensus 660 ~~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 733 (971)
+.+.|+|+|.|.|.++ ..+||++.||+.+|..|...++||++.+.+.+-.+...+|+++++|+.
T Consensus 86 ~~~~v~f~vkd~~~~g----------~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~ 149 (808)
T PLN02270 86 MASNIIFTVKDDNPIG----------ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFE 149 (808)
T ss_pred CcceEEEEEecCCccC----------ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEE
Confidence 9999999999999886 469999999999999999999999999766544444458999999985
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-10 Score=106.96 Aligned_cols=93 Identities=19% Similarity=0.216 Sum_probs=77.4
Q ss_pred EEEEEEeeeCCCCCCccCCCC--cccCcEEEEEEC---CEEEeeecccCCCC--CeecceeEEEeeCC------------
Q 046822 600 LEMGILGATGLMPMKFKEGKG--GSVDAYCVAKYG---QKWVRTRTVVDSLS--PKWNEQYTWEVFDP------------ 660 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g--~s~dpy~~~~~g---~~~~rT~~~~~~~n--P~Wne~~~~~v~~~------------ 660 (971)
|+|.|.+|+|++..+. +..| .+ ||||++.+. ....+|.++++++| |.||+.|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~-~~~g~~~s-D~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 2 LRVIVWNTRDVLNDDT-NITGEKMS-DIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred EEEEEEECcCCccccc-ccCCcccc-CeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 7999999999775443 3345 47 999999984 35699999999999 99999999987641
Q ss_pred ------------CcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCc
Q 046822 661 ------------CTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDR 703 (971)
Q Consensus 661 ------------~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~ 703 (971)
...|+|+|||+|.++ +|++||.+.++|+.+..+.
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s---------~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDKFS---------PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcccC---------CCCcceEEEEEhhhccccc
Confidence 238999999999886 8999999999999987654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-11 Score=137.80 Aligned_cols=126 Identities=32% Similarity=0.557 Sum_probs=104.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-------------------------------eEEEeecccCCCCCeee
Q 046822 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-------------------------------QILRTQVKYKDLNPIWN 54 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-------------------------------~~~~T~~~~~t~nP~wn 54 (971)
..|.|.+.+|+||-++|.+|.||||+...+.. -.+-|.++++|+||.|+
T Consensus 114 ~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~ 193 (1103)
T KOG1328|consen 114 VLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWS 193 (1103)
T ss_pred HHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchh
Confidence 34567788899999999999999999987720 03558899999999999
Q ss_pred eeeEEecCCCCCCCcceEEEEEEeCCCC--------------------------------CCC---CceeEEEEEeCccc
Q 046822 55 EKLVFDVPDIAELPYKHIEVNVFNERRS--------------------------------SNS---RNFLGKVRAPCSQL 99 (971)
Q Consensus 55 e~f~f~v~~~~~l~~~~L~i~V~d~~~~--------------------------------~~~---d~~lG~~~i~l~~l 99 (971)
|.|.|.+.+.. ...+.+.+||+|.- ++. |||||++.||++++
T Consensus 194 EkF~F~IeDv~---tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei 270 (1103)
T KOG1328|consen 194 EKFQFTIEDVQ---TDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI 270 (1103)
T ss_pred hheeeehhccc---cceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence 99999987654 58999999999631 112 79999999999999
Q ss_pred cccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeeccc
Q 046822 100 CKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTTEE 137 (971)
Q Consensus 100 ~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~ 137 (971)
-. ....+||.|++++.+++++|.+++++++.....
T Consensus 271 P~---~Gld~WFkLepRS~~S~VqG~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 271 PP---DGLDQWFKLEPRSDKSKVQGQVKLKLWLSTKEE 305 (1103)
T ss_pred Cc---chHHHHhccCcccccccccceEEEEEEEeeecc
Confidence 43 234689999999999999999999999986554
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.2e-10 Score=106.36 Aligned_cols=93 Identities=23% Similarity=0.320 Sum_probs=78.8
Q ss_pred EEEEEEEeeCCCCCC--CCC--CCCcEEEEEEcC---eEEEeecccCCCC--CeeeeeeEEecCCC--------------
Q 046822 8 LVVEVIAAHNLMPKD--GEG--SSSPFVEVEFEK---QILRTQVKYKDLN--PIWNEKLVFDVPDI-------------- 64 (971)
Q Consensus 8 L~V~V~~a~~L~~~d--~~g--~~dPyv~v~~~~---~~~~T~~~~~t~n--P~wne~f~f~v~~~-------------- 64 (971)
|+|.|.+|+|++..+ ..| .+||||++.+.+ ..++|.++++++| |.||+.|.|.+..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999966543 355 599999999985 4799999999999 99999999986541
Q ss_pred ------CCCCcceEEEEEEeCCCCCCCCceeEEEEEeCccccc
Q 046822 65 ------AELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCK 101 (971)
Q Consensus 65 ------~~l~~~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~ 101 (971)
+.+....|.++|||.|.++ +|++||++.++|..+..
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s-~dd~iG~~~l~l~~l~~ 123 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFS-PDDFLGSLELDLSILPR 123 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccC-CCCcceEEEEEhhhccc
Confidence 3355689999999999987 89999999999998854
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.4e-10 Score=100.30 Aligned_cols=99 Identities=31% Similarity=0.529 Sum_probs=83.5
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-EEEeeecccCCCCCeecceeEEEeeC-CCcEEEEEEEeCCCCCcc
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-KWVRTRTVVDSLSPKWNEQYTWEVFD-PCTVITVGVFDNCSLDKN 677 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-~~~rT~~~~~~~nP~Wne~~~~~v~~-~~~~l~i~V~D~~~~~~~ 677 (971)
|.|.|++|++|..... .+.. ||||.+.+.+ ..++|+++.++.||.||+.|.|++.. ....|.|+|||.+..+
T Consensus 1 l~v~i~~~~~l~~~~~---~~~~-~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~-- 74 (102)
T cd00030 1 LRVTVIEARNLPAKDL---NGKS-DPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS-- 74 (102)
T ss_pred CEEEEEeeeCCCCcCC---CCCC-CcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC--
Confidence 4689999999986432 4566 9999999987 88999999999999999999999998 6679999999998553
Q ss_pred ccCCCCCCCceeEEEEEEccccc-CCceEeeeEec
Q 046822 678 IINNSGGRDSRIGKVRIRLSTLE-SDRVYTHSYPL 711 (971)
Q Consensus 678 ~~~~~~~~d~~iG~~~i~l~~l~-~~~~~~~~~~L 711 (971)
.+.+||.+.+++.++. .+.....|++|
T Consensus 75 -------~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 -------KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred -------CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6899999999999997 55555667764
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.5e-10 Score=100.28 Aligned_cols=101 Identities=39% Similarity=0.599 Sum_probs=84.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCC
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSR 86 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d 86 (971)
|.|+|++|++|......+..+|||.+.+.+ ..++|++..++.||.|||.|.|.+.... ...|.|+|||.+..+ ++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~---~~~l~i~v~~~~~~~-~~ 76 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPE---SDTLTVEVWDKDRFS-KD 76 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCC---CCEEEEEEEecCCCC-CC
Confidence 579999999998876677899999999998 8899999999999999999999988632 378999999999875 68
Q ss_pred ceeEEEEEeCccccccCCcccceEEEe
Q 046822 87 NFLGKVRAPCSQLCKNEGEATAQLYTL 113 (971)
Q Consensus 87 ~~lG~~~i~l~~l~~~~~~~~~~w~~L 113 (971)
.++|++.+++.++... ......|++|
T Consensus 77 ~~ig~~~~~l~~l~~~-~~~~~~~~~l 102 (102)
T cd00030 77 DFLGEVEIPLSELLDS-GKEGELWLPL 102 (102)
T ss_pred ceeEEEEEeHHHhhhc-CCcCcceecC
Confidence 9999999999998721 2233467764
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-09 Score=123.08 Aligned_cols=122 Identities=20% Similarity=0.290 Sum_probs=91.5
Q ss_pred eeEEEEEEEeeeCCCCC-CccCCCCcccCcEEEEEEC-----CEEEeeecccCCCCCeecceeEEEeeCCCc-EEEEEEE
Q 046822 597 IGVLEMGILGATGLMPM-KFKEGKGGSVDAYCVAKYG-----QKWVRTRTVVDSLSPKWNEQYTWEVFDPCT-VITVGVF 669 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~-~~~~~~g~s~dpy~~~~~g-----~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~-~l~i~V~ 669 (971)
...|.|+|+.|++++.. +.+-+.+..+||||+|.+. ....+|.+..++.||.|||.|.|++..|.. .|.|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 46799999999998621 1111222334999999983 335788877888999999999999998876 8999999
Q ss_pred eCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 670 DNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 670 D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
|+|... +|+|||+..+|++.|..|. +..||.+.+..... .-+|.+.++|
T Consensus 488 D~D~~~---------~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~-~~~Ll~~f~~ 536 (537)
T PLN02223 488 DYEVST---------ADAFCGQTCLPVSELIEGI---RAVPLYDERGKACS-STMLLTRFKW 536 (537)
T ss_pred ecCCCC---------CCcEEEEEecchHHhcCCc---eeEeccCCCcCCCC-CceEEEEEEe
Confidence 999654 8999999999999999987 77899865543322 2445555443
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.02 E-value=2e-09 Score=97.29 Aligned_cols=91 Identities=33% Similarity=0.500 Sum_probs=77.8
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE---EEeeecccCCCCCeecceeEEEeeCC-CcEEEEEEEeCCCCC
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK---WVRTRTVVDSLSPKWNEQYTWEVFDP-CTVITVGVFDNCSLD 675 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~---~~rT~~~~~~~nP~Wne~~~~~v~~~-~~~l~i~V~D~~~~~ 675 (971)
|.+.|++|++|..... .+.. +|||+++++.. ..+|+++.++.||.||+.|.|++..+ ...|.|+|||.+..+
T Consensus 2 l~i~i~~~~~l~~~~~---~~~~-~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~ 77 (101)
T smart00239 2 LTVKIISARNLPKKDK---KGKS-DPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG 77 (101)
T ss_pred eEEEEEEeeCCCCCCC---CCCC-CceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc
Confidence 6799999999986432 2445 99999999754 79999999999999999999999987 779999999998543
Q ss_pred ccccCCCCCCCceeEEEEEEcccccCCc
Q 046822 676 KNIINNSGGRDSRIGKVRIRLSTLESDR 703 (971)
Q Consensus 676 ~~~~~~~~~~d~~iG~~~i~l~~l~~~~ 703 (971)
.+.+||.+.+++.++..+.
T Consensus 78 ---------~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 ---------RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred ---------CCceeEEEEEEHHHcccCc
Confidence 7899999999999987655
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.4e-09 Score=96.74 Aligned_cols=91 Identities=36% Similarity=0.674 Sum_probs=80.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe---EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ---ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSS 83 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~---~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~ 83 (971)
.|.|+|++|++|......+..+|||++++.+. .++|++..++.||.|||.|.|.+.... ...|.|+|||.+..+
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~~l~i~v~~~~~~~ 77 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE---LAELEIEVYDKDRFG 77 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc---cCEEEEEEEecCCcc
Confidence 37899999999998876678999999999975 799999999999999999999988763 389999999998765
Q ss_pred CCCceeEEEEEeCccccc
Q 046822 84 NSRNFLGKVRAPCSQLCK 101 (971)
Q Consensus 84 ~~d~~lG~~~i~l~~l~~ 101 (971)
.+.++|.+.+++.++..
T Consensus 78 -~~~~~G~~~~~l~~~~~ 94 (101)
T smart00239 78 -RDDFIGQVTIPLSDLLL 94 (101)
T ss_pred -CCceeEEEEEEHHHccc
Confidence 68999999999988854
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.9e-09 Score=119.46 Aligned_cols=119 Identities=17% Similarity=0.257 Sum_probs=90.8
Q ss_pred CeEEEEEEEEeeCCCCC-----CCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEE
Q 046822 5 KEKLVVEVIAAHNLMPK-----DGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEV 74 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~-----d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i 74 (971)
...|.|+|+.|++++.. +.....||||+|.+.| ..++|++..++.||.|||+|.|.+..++. ..|+|
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PEL---AlLrf 484 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDL---ALISF 484 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCc---eEEEE
Confidence 35799999999987521 2234679999999975 35778888899999999999999988773 67999
Q ss_pred EEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 75 NVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 75 ~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
.|+|+|..+ +++|+|+..+|+..+... .++++|..+....-..-.|.+++.+
T Consensus 485 ~V~D~D~~~-~ddfiGQ~~LPv~~Lr~G-----yR~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 485 EVYDYEVST-ADAFCGQTCLPVSELIEG-----IRAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred EEEecCCCC-CCcEEEEEecchHHhcCC-----ceeEeccCCCcCCCCCceEEEEEEe
Confidence 999999865 799999999999999642 2568887664432223455555543
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.7e-09 Score=120.30 Aligned_cols=120 Identities=20% Similarity=0.262 Sum_probs=92.6
Q ss_pred eeEEEEEEEeeeCCCCCCc---cCCCCcccCcEEEEEE-C----CEEEeeecccCCCCCeecceeEEEeeCCCc-EEEEE
Q 046822 597 IGVLEMGILGATGLMPMKF---KEGKGGSVDAYCVAKY-G----QKWVRTRTVVDSLSPKWNEQYTWEVFDPCT-VITVG 667 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~---~~~~g~s~dpy~~~~~-g----~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~-~l~i~ 667 (971)
...|.|+|+.|++|+.... .+..... ||||++.+ | ....+|+++.++.||.|||.|.|++..|.. .|.|.
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~-D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPP-DFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCC-CceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEE
Confidence 3679999999999863111 1112223 99999997 3 456899999999999999999999998764 89999
Q ss_pred EEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 668 VFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
|||+|..+ .++++|+..+|++.|..|. +++||.+... . +.+...|-++|.
T Consensus 548 V~D~D~~~---------~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G--~-~l~~a~Llv~f~ 597 (599)
T PLN02952 548 VREYDMSE---------KDDFGGQTCLPVSELRPGI---RSVPLHDKKG--E-KLKNVRLLMRFI 597 (599)
T ss_pred EEecCCCC---------CCCeEEEEEcchhHhcCCc---eeEeCcCCCC--C-CCCCEEEEEEEE
Confidence 99998654 7999999999999999987 6899975443 2 225556666654
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-09 Score=115.57 Aligned_cols=124 Identities=29% Similarity=0.487 Sum_probs=103.8
Q ss_pred CeEEEEEEEEeeCCCCCCC-CCCCCcEEEEEEcCeEEEeecccCCCCCeee-eeeEEecCCCCCCCcceEEEEEEeCCCC
Q 046822 5 KEKLVVEVIAAHNLMPKDG-EGSSSPFVEVEFEKQILRTQVKYKDLNPIWN-EKLVFDVPDIAELPYKHIEVNVFNERRS 82 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~-~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wn-e~f~f~v~~~~~l~~~~L~i~V~d~~~~ 82 (971)
.|+|.|+|+.||+|+-+|. ....|.||.+++.+..++|.+..+++||.|| +.|.|++.+. ++++..|.|.+.|+|..
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevdda-dlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDA-DLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChh-hhccCCeeEEEeccccc
Confidence 5789999999999999986 4467999999999999999999999999999 7899999864 58889999999999998
Q ss_pred CCCCceeEEEEEeCcccccc--------CCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 83 SNSRNFLGKVRAPCSQLCKN--------EGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 83 ~~~d~~lG~~~i~l~~l~~~--------~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
+ .++-||++.|+++.+.-. .+.....||++-+.-. .++|+|.+-+.+
T Consensus 81 s-andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih--girgeinvivkv 135 (1169)
T KOG1031|consen 81 S-ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH--GIRGEINVIVKV 135 (1169)
T ss_pred c-cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc--cccceeEEEEEE
Confidence 7 799999999999998422 1234467999876422 467888866654
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-08 Score=116.94 Aligned_cols=122 Identities=19% Similarity=0.243 Sum_probs=91.4
Q ss_pred eeEEEEEEEeeeCCC--CCCccCCCCcccCcEEEEEE-C----CEEEeeecccCCCCCeecceeEEEeeCCCc-EEEEEE
Q 046822 597 IGVLEMGILGATGLM--PMKFKEGKGGSVDAYCVAKY-G----QKWVRTRTVVDSLSPKWNEQYTWEVFDPCT-VITVGV 668 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~--~~~~~~~~g~s~dpy~~~~~-g----~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~-~l~i~V 668 (971)
...|.|+|+.+++++ ..+.....+..+||||+|.+ | ....||+++.++.||.|||.|.|.+..|.- .|.|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 357999999999853 11111112223399999998 2 346899999999999999999999998765 899999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
+|+|..+ .|++||+..+|++.|..|. +..+|.+....... .-.|.+.++|
T Consensus 531 ~d~D~~~---------~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYDMSE---------KDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred EECCCCC---------CCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCC-CeeEEEEEEe
Confidence 9998654 7999999999999999987 67888865443222 2455555554
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-08 Score=119.33 Aligned_cols=125 Identities=18% Similarity=0.294 Sum_probs=101.2
Q ss_pred CeEEEEEEEEeeCCCCCC------------------CCCCCCcEEEEEEcCe-EEEeecccCC-CCCeeeeeeEEecCCC
Q 046822 5 KEKLVVEVIAAHNLMPKD------------------GEGSSSPFVEVEFEKQ-ILRTQVKYKD-LNPIWNEKLVFDVPDI 64 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d------------------~~g~~dPyv~v~~~~~-~~~T~~~~~t-~nP~wne~f~f~v~~~ 64 (971)
-|.|.|+|.+|++|+..+ ..+.+||||.|.+++. ..||+++.+. .||.|||+|.+.+...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 478999999999998531 1357899999999986 5899999885 6999999999999887
Q ss_pred CCCCcceEEEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCe-eeeEEEEEEEeeeccc
Q 046822 65 AELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSH-IRGEISLKLFVSTTEE 137 (971)
Q Consensus 65 ~~l~~~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~~~~~~ 137 (971)
. ..+.|.|.|.+.++ ..+||.+.||..++.. ++....||++.....+.. ..-.|++++.|.+-..
T Consensus 87 ~----~~v~f~vkd~~~~g--~~~ig~~~~p~~~~~~--g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 87 A----SNIIFTVKDDNPIG--ATLIGRAYIPVEEILD--GEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred c----ceEEEEEecCCccC--ceEEEEEEEEHHHhcC--CCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 6 79999999999986 6799999999999875 234568999987754322 2348888998887443
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-08 Score=116.43 Aligned_cols=122 Identities=17% Similarity=0.242 Sum_probs=92.3
Q ss_pred eeEEEEEEEeeeCCCCCCcc--CCCCcccCcEEEEEE-C----CEEEeeecccCCCCCeecceeEEEeeCCCc-EEEEEE
Q 046822 597 IGVLEMGILGATGLMPMKFK--EGKGGSVDAYCVAKY-G----QKWVRTRTVVDSLSPKWNEQYTWEVFDPCT-VITVGV 668 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~--~~~g~s~dpy~~~~~-g----~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~-~l~i~V 668 (971)
...|.|+|+.+++++....+ ...+..+||||+|.+ | ....||++..++.||.|||.|.|++..|.- .|.|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 35799999999997532211 112233499999998 3 345789988999999999999999998765 899999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
+|+|... +|+|||+..||+..|..|. +..+|.+....... .-.|.+.+.|
T Consensus 548 ~d~d~~~---------~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINE---------KDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred EECCCCC---------CCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCC-CCeeEEEEEe
Confidence 9998654 8999999999999999987 67888765443222 2456655554
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.3e-08 Score=115.88 Aligned_cols=118 Identities=16% Similarity=0.202 Sum_probs=89.5
Q ss_pred CeEEEEEEEEeeCCCCC------CCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEE
Q 046822 5 KEKLVVEVIAAHNLMPK------DGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIE 73 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~ 73 (971)
...|.|+|+.|++|+.. +.....||||+|.+-+ .+++|+++.++.||.|||+|.|.+..++- ..|+
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PEL---Allr 545 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPEL---ALLR 545 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCc---cEEE
Confidence 45799999999987531 1123459999999864 46899999999999999999999887653 5799
Q ss_pred EEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEE
Q 046822 74 VNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLF 131 (971)
Q Consensus 74 i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 131 (971)
|.|+|+|..+ .++|+|+..+|+..|... .+|++|..+.......-.|.+++.
T Consensus 546 f~V~D~D~~~-~ddfiGq~~lPv~~Lr~G-----yR~VpL~~~~G~~l~~a~Llv~f~ 597 (599)
T PLN02952 546 IEVREYDMSE-KDDFGGQTCLPVSELRPG-----IRSVPLHDKKGEKLKNVRLLMRFI 597 (599)
T ss_pred EEEEecCCCC-CCCeEEEEEcchhHhcCC-----ceeEeCcCCCCCCCCCEEEEEEEE
Confidence 9999999876 799999999999999642 268999766433222334444444
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.82 E-value=4e-08 Score=113.20 Aligned_cols=122 Identities=19% Similarity=0.210 Sum_probs=93.4
Q ss_pred eeEEEEEEEeeeCCCC---CCccCCCCcccCcEEEEEE-C----CEEEeeecccCCCCCee-cceeEEEeeCCCc-EEEE
Q 046822 597 IGVLEMGILGATGLMP---MKFKEGKGGSVDAYCVAKY-G----QKWVRTRTVVDSLSPKW-NEQYTWEVFDPCT-VITV 666 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~---~~~~~~~g~s~dpy~~~~~-g----~~~~rT~~~~~~~nP~W-ne~~~~~v~~~~~-~l~i 666 (971)
...|.|+|++|++|+. .+..+..... ||||++.+ | ...+||+++.++.||.| ||.|.|++..|.- .|.|
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~-DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPP-DFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCC-CcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEE
Confidence 3579999999999842 1111112224 99999997 2 34589999999999999 9999999998764 8999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
.|+|+|..+ .|++||+..||++.|..|. +.++|.+...... ...+|.+.+.|.
T Consensus 509 ~V~D~d~~~---------~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l-~~atLfv~~~~~ 561 (567)
T PLN02228 509 KVQDYDNDT---------QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAY-KNTRLLVSFALD 561 (567)
T ss_pred EEEeCCCCC---------CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCC-CCeEEEEEEEEc
Confidence 999998554 8899999999999999887 6688876554322 236677777765
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-08 Score=111.22 Aligned_cols=119 Identities=26% Similarity=0.443 Sum_probs=97.5
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeec-ceeEEEeeCCC---cEEEEEEEeCCC
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWN-EQYTWEVFDPC---TVITVGVFDNCS 673 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wn-e~~~~~v~~~~---~~l~i~V~D~~~ 673 (971)
|.|-|+|..|++||.||.. .-.+ |.||.+++++..++|.+..+++||.|| +-|.|+|.|.. .+|+|.+.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdka--sd~t-dafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKA--SDLT-DAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccc--cccc-hheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 7889999999999999752 2345 999999999999999999999999999 58999998643 389999999998
Q ss_pred CCccccCCCCCCCceeEEEEEEccccc----------CCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 674 LDKNIINNSGGRDSRIGKVRIRLSTLE----------SDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 674 ~~~~~~~~~~~~d~~iG~~~i~l~~l~----------~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
.+ .+|-||++.|++..|. .|.....|+|+.+.-. |. +|+|.+-++.
T Consensus 80 ys---------andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih-gi--rgeinvivkv 135 (1169)
T KOG1031|consen 80 YS---------ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH-GI--RGEINVIVKV 135 (1169)
T ss_pred cc---------cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc-cc--cceeEEEEEE
Confidence 86 7899999999999873 2466789999875321 32 4888775554
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-08 Score=115.00 Aligned_cols=120 Identities=21% Similarity=0.318 Sum_probs=92.7
Q ss_pred EEEEEEEeeeCCCCCCccCCC-CcccCcEEEEEEC-----CEEEeeecc-cCCCCCeecceeEEEeeCCCc-EEEEEEEe
Q 046822 599 VLEMGILGATGLMPMKFKEGK-GGSVDAYCVAKYG-----QKWVRTRTV-VDSLSPKWNEQYTWEVFDPCT-VITVGVFD 670 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~-g~s~dpy~~~~~g-----~~~~rT~~~-~~~~nP~Wne~~~~~v~~~~~-~l~i~V~D 670 (971)
.|.|+|++++|+++.-..... ..+ ||||.+++- ....+|+++ .++-||.|+|.|+|++..|.- .|.+.|+|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~-dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d 695 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEIS-DPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHD 695 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccC-CCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEe
Confidence 799999999987753222222 345 999999983 235899955 677899999999999999876 89999999
Q ss_pred CCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 671 NCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 671 ~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
+|..+ +|+|+|+..+|++.|..|. +..||.+..+... ..-+|.+.+.++
T Consensus 696 ~d~~~---------~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~-~~asLfv~i~~~ 744 (746)
T KOG0169|consen 696 YDYIG---------KDDFIGQTTLPVSELRQGY---RHVPLLSREGEAL-SSASLFVRIAIV 744 (746)
T ss_pred cCCCC---------cccccceeeccHHHhhCce---eeeeecCCCCccc-cceeEEEEEEEe
Confidence 99664 8999999999999999987 6688886543222 235666666654
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-08 Score=113.74 Aligned_cols=118 Identities=23% Similarity=0.351 Sum_probs=93.2
Q ss_pred EEEEEEEEeeCCCCCCC----CCCCCcEEEEEEcC-----eEEEee-cccCCCCCeeeeeeEEecCCCCCCCcceEEEEE
Q 046822 7 KLVVEVIAAHNLMPKDG----EGSSSPFVEVEFEK-----QILRTQ-VKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNV 76 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~----~g~~dPyv~v~~~~-----~~~~T~-~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V 76 (971)
+|.|.|+.++++.+.-. +..+||||.|.+-| ..++|+ +..++-||.|+|+|+|.+..|+- ..|+|.|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL---AliRF~V 693 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL---ALIRFEV 693 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce---eEEEEEE
Confidence 79999999997765432 24689999999865 268899 66789999999999999998874 7899999
Q ss_pred EeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEee
Q 046822 77 FNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVS 133 (971)
Q Consensus 77 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 133 (971)
+|+|..+ +|+|+|+..+|+..|... . +-++|..+.+..-..-.|.+++.+.
T Consensus 694 ~d~d~~~-~ddF~GQ~tlP~~~L~~G----y-RhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 694 HDYDYIG-KDDFIGQTTLPVSELRQG----Y-RHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred EecCCCC-cccccceeeccHHHhhCc----e-eeeeecCCCCccccceeEEEEEEEe
Confidence 9999976 899999999999999641 1 3378887654444556666766654
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.76 E-value=3e-08 Score=86.88 Aligned_cols=86 Identities=23% Similarity=0.340 Sum_probs=70.8
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE-EEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCccc
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-WVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNI 678 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~~ 678 (971)
|.|+|..|+++....+--..++. ||||++++++. ++||++ +.||.|||.|.|+| +-...+.|.|||..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~-etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~------ 69 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRP-ETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKG------ 69 (109)
T ss_pred CEEEEEEEecCccccchhhccCC-CcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCC------
Confidence 57899999999876531135666 99999999876 899998 48999999999999 56779999999985
Q ss_pred cCCCCCCCceeEEEEEEccccc
Q 046822 679 INNSGGRDSRIGKVRIRLSTLE 700 (971)
Q Consensus 679 ~~~~~~~d~~iG~~~i~l~~l~ 700 (971)
++..-.||-.-+++++|.
T Consensus 70 ----~~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 70 ----GDQPVPVGLLWLRLSDIA 87 (109)
T ss_pred ----CCeecceeeehhhHHHHH
Confidence 235677999999999974
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.8e-08 Score=113.03 Aligned_cols=119 Identities=19% Similarity=0.319 Sum_probs=90.3
Q ss_pred CeEEEEEEEEeeCCCCC------CCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEE
Q 046822 5 KEKLVVEVIAAHNLMPK------DGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIE 73 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~ 73 (971)
..+|.|+|+.+++++.. +.....||||+|.+-+ .+++|++..++.||.|||+|.|.+.-++- ..|+
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPEL---AllR 544 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPEL---ALLR 544 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCce---eEEE
Confidence 35799999999987521 2233579999999964 35789999999999999999999887764 7899
Q ss_pred EEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 74 VNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 74 i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
|.|+|+|..+ +|+|+|+..+|+..|... -+..+|..+....-..-.|.+++.+
T Consensus 545 f~V~d~d~~~-~ddfiGQ~~lPv~~Lr~G-----yR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 545 VEVHEHDINE-KDDFGGQTCLPVSEIRQG-----IHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEEECCCCC-CCCEEEEEEcchHHhhCc-----cceEeccCCCcCCCCCCeeEEEEEe
Confidence 9999999865 799999999999999641 1347887664432223455555544
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.6e-08 Score=86.41 Aligned_cols=84 Identities=19% Similarity=0.264 Sum_probs=71.4
Q ss_pred EEEEEEEeeCCCCCC---CCCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCC
Q 046822 8 LVVEVIAAHNLMPKD---GEGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSS 83 (971)
Q Consensus 8 L~V~V~~a~~L~~~d---~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~ 83 (971)
|.|+|..|+|+...+ ..+.+||||.+++++. +.||++ +.||.|||+|.|.+.. . ..+++.|||...-
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk-~----nEiel~VyDk~~~- 71 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK-N----NEEEVIVYDKGGD- 71 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC-C----cEEEEEEEeCCCC-
Confidence 679999999998877 4778899999999986 889987 5899999999999953 3 7899999998652
Q ss_pred CCCceeEEEEEeCccccc
Q 046822 84 NSRNFLGKVRAPCSQLCK 101 (971)
Q Consensus 84 ~~d~~lG~~~i~l~~l~~ 101 (971)
..-.+|...+.++++..
T Consensus 72 -~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 72 -QPVPVGLLWLRLSDIAE 88 (109)
T ss_pred -eecceeeehhhHHHHHH
Confidence 46789999999998853
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.4e-08 Score=110.04 Aligned_cols=101 Identities=22% Similarity=0.361 Sum_probs=84.6
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-C----C-EEEeeecccCCCCCeec-ceeEEEeeCCCc-EEEEEEE
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-G----Q-KWVRTRTVVDSLSPKWN-EQYTWEVFDPCT-VITVGVF 669 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-g----~-~~~rT~~~~~~~nP~Wn-e~~~~~v~~~~~-~l~i~V~ 669 (971)
-.|.|.|++|+.|+. .|+|.. .|||.|++ | . +.++|.++.+++||+|| |.|+|+|++|.- .|.+.|+
T Consensus 1065 ~~lsv~vigaRHL~k----~gr~i~-cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~ 1139 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LGRSIA-CPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVY 1139 (1267)
T ss_pred eEEEEEEeecccccc----CCCCcc-CCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEe
Confidence 478899999999984 356666 79999997 3 3 34555556888999999 999999999876 8999999
Q ss_pred eCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecC
Q 046822 670 DNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLH 715 (971)
Q Consensus 670 D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~ 715 (971)
|+|.++ ...|||++..|+..|..|- +.+||++.-
T Consensus 1140 eeDmfs---------~~~FiaqA~yPv~~ik~Gf---RsVpLkN~y 1173 (1267)
T KOG1264|consen 1140 EEDMFS---------DPNFLAQATYPVKAIKSGF---RSVPLKNGY 1173 (1267)
T ss_pred cccccC---------Ccceeeeeecchhhhhccc---eeeecccCc
Confidence 999997 5569999999999999886 789998643
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.7e-09 Score=117.13 Aligned_cols=94 Identities=29% Similarity=0.513 Sum_probs=82.5
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe-------EEEeecccCCCCCeeeeeeEEecCCCC-CCCcceEEEEE
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-------ILRTQVKYKDLNPIWNEKLVFDVPDIA-ELPYKHIEVNV 76 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~wne~f~f~v~~~~-~l~~~~L~i~V 76 (971)
...|.|.|+.|+++.+-|.+|.|||||+|.+... .++|+++.+|+||+|+|+|+|.|.... .-....|.|+|
T Consensus 946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTV 1025 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTV 1025 (1103)
T ss_pred ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEe
Confidence 3468899999999999999999999999999853 689999999999999999999997432 11256899999
Q ss_pred EeCCCCCCCCceeEEEEEeCccc
Q 046822 77 FNERRSSNSRNFLGKVRAPCSQL 99 (971)
Q Consensus 77 ~d~~~~~~~d~~lG~~~i~l~~l 99 (971)
+|+|-+. .+||-|++.+.|..+
T Consensus 1026 MDHD~L~-sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1026 MDHDYLR-SNDFAGEAFLELGDV 1047 (1103)
T ss_pred eccceec-ccccchHHHHhhCCC
Confidence 9999986 899999999999988
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-07 Score=108.86 Aligned_cols=119 Identities=16% Similarity=0.202 Sum_probs=89.1
Q ss_pred CeEEEEEEEEeeCCC----CC--CCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEE
Q 046822 5 KEKLVVEVIAAHNLM----PK--DGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIE 73 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~----~~--d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~ 73 (971)
...|.|+|+.++++. .. +.....||||+|.+.+ .+++|+++.++.||.|||+|.|.+..++- ..|+
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeL---AllR 527 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPEL---ALLR 527 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCce---eEEE
Confidence 357999999998753 11 1234579999999963 36899999998999999999999887763 7899
Q ss_pred EEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 74 VNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 74 i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
|.|+|+|..+ .++|+|+..+|+..|... -+.++|..+....-..-.|.+.+.+
T Consensus 528 f~V~d~D~~~-~ddfigq~~lPv~~Lr~G-----yR~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 528 LEVHEYDMSE-KDDFGGQTCLPVWELSQG-----IRAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEEEECCCCC-CCcEEEEEEcchhhhhCc-----cceEEccCCCcCCCCCeeEEEEEEe
Confidence 9999998865 799999999999999642 1447887664332223455555543
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.65 E-value=2e-07 Score=107.47 Aligned_cols=120 Identities=15% Similarity=0.210 Sum_probs=92.4
Q ss_pred eEEEEEEEEeeCCCC---CC---CCCCCCcEEEEEEcC-----eEEEeecccCCCCCee-eeeeEEecCCCCCCCcceEE
Q 046822 6 EKLVVEVIAAHNLMP---KD---GEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIW-NEKLVFDVPDIAELPYKHIE 73 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~---~d---~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~w-ne~f~f~v~~~~~l~~~~L~ 73 (971)
..|.|+|++|++|+. .+ .....||||+|.+.+ ..++|++..++.||.| ||+|.|.+..++- ..|+
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pEL---A~lR 507 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPEL---ALLW 507 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCce---eEEE
Confidence 479999999998731 11 123479999999864 3579999988899999 9999999887763 6899
Q ss_pred EEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 74 VNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 74 i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
|.|+|+|..+ .++|+|+..+|+..|.. + -+.++|.......-....|.+++.+.+
T Consensus 508 f~V~D~d~~~-~d~figq~~lPv~~Lr~-G----YR~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 508 FKVQDYDNDT-QNDFAGQTCLPLPELKS-G----VRAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EEEEeCCCCC-CCCEEEEEEcchhHhhC-C----eeEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 9999998766 79999999999999953 1 144788766543334567888877643
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.1e-07 Score=103.69 Aligned_cols=95 Identities=33% Similarity=0.469 Sum_probs=80.0
Q ss_pred CCCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC------eEEEeecccCCCCCeee-eeeEEecCCCCCCCcceEEE
Q 046822 2 GDGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK------QILRTQVKYKDLNPIWN-EKLVFDVPDIAELPYKHIEV 74 (971)
Q Consensus 2 ~~~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~wn-e~f~f~v~~~~~l~~~~L~i 74 (971)
|.....|.|.|+.||.|+.. +.|-+.|||.|.+-+ ..++|.+..+++||+|| |+|+|.+.+|+- ..|+|
T Consensus 1061 ~l~p~~lsv~vigaRHL~k~-gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~---A~lRF 1136 (1267)
T KOG1264|consen 1061 GLLPMTLSVKVLGARHLPKL-GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF---AFLRF 1136 (1267)
T ss_pred cccceEEEEEEeeccccccC-CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCce---EEEEE
Confidence 34567899999999999843 356677999999863 35666777899999999 999999999873 78999
Q ss_pred EEEeCCCCCCCCceeEEEEEeCccccc
Q 046822 75 NVFNERRSSNSRNFLGKVRAPCSQLCK 101 (971)
Q Consensus 75 ~V~d~~~~~~~d~~lG~~~i~l~~l~~ 101 (971)
.|||.|.++ ...|||++.+|+..+..
T Consensus 1137 ~V~eeDmfs-~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1137 VVYEEDMFS-DPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred EEecccccC-Ccceeeeeecchhhhhc
Confidence 999999998 56799999999999854
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-06 Score=102.31 Aligned_cols=117 Identities=22% Similarity=0.311 Sum_probs=90.7
Q ss_pred eeEEEEEEEeeeCCCCC-C--ccCCCCcccCcEEEEEECCEE-EeeecccCCCCCeecceeEEEeeCCC-cEEEEEEEeC
Q 046822 597 IGVLEMGILGATGLMPM-K--FKEGKGGSVDAYCVAKYGQKW-VRTRTVVDSLSPKWNEQYTWEVFDPC-TVITVGVFDN 671 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~-~--~~~~~g~s~dpy~~~~~g~~~-~rT~~~~~~~nP~Wne~~~~~v~~~~-~~l~i~V~D~ 671 (971)
-|.|.++|++|+-+... . ..-+.|+ |||+.+.+++.+ .|| .+..||.|||.|.+++..+. +.++|+|.|.
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~--~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~ 83 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGK--ATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK 83 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCC--CceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecC
Confidence 48999999999843221 0 0012333 999999998765 588 55669999999999999988 6899999983
Q ss_pred CCCCccccCCCCCCCceeEEEEEEcccccCCce-EeeeEeceecCCCCcccceEEEEEEEEee
Q 046822 672 CSLDKNIINNSGGRDSRIGKVRIRLSTLESDRV-YTHSYPLLMLHPSGVKKMGELHLAVRFSC 733 (971)
Q Consensus 672 ~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~-~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 733 (971)
-.+||++.||+.+|..|.. .+.||++.+.+.+-.+. .+|++.++|+.
T Consensus 84 --------------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~ 131 (758)
T PLN02352 84 --------------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRP 131 (758)
T ss_pred --------------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEE
Confidence 3799999999999988855 89999999765433322 58999999984
|
|
| >PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.9e-06 Score=99.08 Aligned_cols=158 Identities=17% Similarity=0.314 Sum_probs=108.0
Q ss_pred cccccCCchhHHHHHHHHHHHHHc--chhHHHHHHHHHHHHHhhhccc-cCCCCCCCCCcCCccCCCCCCCCCcccCCCC
Q 046822 788 SMRNWHKPIYSTLSLAFFFLLVLM--PELVIPAILLYLSLLGLWRYRS-RSRHPPHMDIRLSQADSVFPDELDEEFDSFP 864 (971)
Q Consensus 788 s~~~W~~p~~s~~~~~~~~~~~~~--~~l~~p~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~dee~d~~~ 864 (971)
++..||+|.+|+...+++..++|. ..+++|++++++.+.++|.-.. +.+.+ ++ .. .-..-|
T Consensus 508 ~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~--~~-------~v-------~V~~pP 571 (683)
T PF04842_consen 508 KLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRLGKS--FG-------EV-------TVRDPP 571 (683)
T ss_pred HHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc--cc-------eE-------EecCCC
Confidence 679999999998887777766663 2234799999888888874221 21111 00 00 001112
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhhhccccChhhHHHHHHHHHHHHhhhhhhhhhhhhhheeec-cc
Q 046822 865 TSRGADIVRIRYDRLRSVAGRIQTVVGDMATQGERFQALISWRDPRATFLFVIFCLFAAIGFYAVPVRVVFALSGVY-VL 943 (971)
Q Consensus 865 ~~~~~~~~~~r~~~~~~~~~~vQ~~~~~~a~~~Er~~~l~~W~~p~~t~~~~~~~~~~~~~~~~vp~r~i~l~~g~~-~~ 943 (971)
....-+.|- ++|+-...+.+.+..+=-.+=|+++++-|..|.+|-.++++++++++++.|+|+||++++.-+. +.
T Consensus 572 ~~nTvEqil----alQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FT 647 (683)
T PF04842_consen 572 PKNTVEQIL----ALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFT 647 (683)
T ss_pred CccHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222234443 4666667777778788888999999999999999999999999999999999999999998877 34
Q ss_pred cCCcccCCCCCh----hhhhhhcCCC
Q 046822 944 RPPRFRSKLPSP----ALSFFRRLPS 965 (971)
Q Consensus 944 r~p~~~~~~~~~----~~~~~~r~p~ 965 (971)
|+=.||+..-.. +-.++-++|.
T Consensus 648 re~~~Rr~s~er~~RRlrEWW~sIPA 673 (683)
T PF04842_consen 648 RESPFRRESSERFNRRLREWWDSIPA 673 (683)
T ss_pred ccCCCchhhHHHHHHHHHHHHhhCCc
Confidence 444466533222 4455556665
|
|
| >PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.7e-06 Score=96.15 Aligned_cols=150 Identities=22% Similarity=0.318 Sum_probs=95.1
Q ss_pred cccccCCchhHHHHHHHHHHHHHcchhH---HHHHHHHHHHHHhhhccccCCCCCCCCCcCCccCCCCCCCCCcccCCCC
Q 046822 788 SMRNWHKPIYSTLSLAFFFLLVLMPELV---IPAILLYLSLLGLWRYRSRSRHPPHMDIRLSQADSVFPDELDEEFDSFP 864 (971)
Q Consensus 788 s~~~W~~p~~s~~~~~~~~~~~~~~~l~---~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dee~d~~~ 864 (971)
++++|++|..+..+.++|.++|++|.+. +|++++ ++.+++..|.++. |........ ...+.+.+.++.|
T Consensus 34 ~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~l-l~~il~~~yl~~~--p~~~~~~~~-----~~~~~~~~~~~~p 105 (359)
T PF06398_consen 34 RILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLL-LFGILLPSYLYRH--PSPTSSLPK-----SYEDHNPEPSEGP 105 (359)
T ss_pred HeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHeec--CCCcccccc-----cccccCCCcCCCC
Confidence 6799999999999999999988887765 343332 3334455555543 121111100 0011122222222
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhh----hccccChhhHHHHHHHHHHHHhhh----hhhhhhhhhh
Q 046822 865 TSRGADIVRIRYDRLRSVAGRIQTVVGDMATQGERFQA----LISWRDPRATFLFVIFCLFAAIGF----YAVPVRVVFA 936 (971)
Q Consensus 865 ~~~~~~~~~~r~~~~~~~~~~vQ~~~~~~a~~~Er~~~----l~~W~~p~~t~~~~~~~~~~~~~~----~~vp~r~i~l 936 (971)
+-.+. -..+......+||.|+.+.+....+.. +.+|+++..|.+++++|+++.+.+ ++||+|++++
T Consensus 106 tl~~~------s~e~~~nL~dlQn~m~~~~~~~d~~~~~~~~~~~f~~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll 179 (359)
T PF06398_consen 106 TLDKP------SREIVMNLRDLQNKMEDLSDPYDFLSSFLYPYLNFSDENLSSLIFLLLLLSPILLLLLSPFIPWRFVLL 179 (359)
T ss_pred Ccchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 21111 112444556789999999999888875 457999999999888887777655 4689999999
Q ss_pred heeec-cccCCcccCC
Q 046822 937 LSGVY-VLRPPRFRSK 951 (971)
Q Consensus 937 ~~g~~-~~r~p~~~~~ 951 (971)
++|.. .+-||.+++.
T Consensus 180 ~~g~~~l~~Hp~~~~~ 195 (359)
T PF06398_consen 180 VSGAFVLLYHPPWRQA 195 (359)
T ss_pred HHHHHHhhcCCcHHHH
Confidence 99943 5888866643
|
Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p []. |
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.4e-06 Score=93.38 Aligned_cols=178 Identities=16% Similarity=0.172 Sum_probs=122.4
Q ss_pred eeeeeeeecCC-CCccccEEEEeccCCCcceEEEEEecC-------CCCcccEEEEEEccccCCCCCCCCCCCCeEEEee
Q 046822 301 YRGITKRVSSN-HLQWDQVFAFSKDCIQSSAAEIFVKES-------DKDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRME 372 (971)
Q Consensus 301 ~~~kT~~~~~~-nP~wne~f~f~~~~~~~~~l~v~v~D~-------~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 372 (971)
+..+|.++.+. ||.|-+.|.....-.....|++.++|. ...+|+|++...+..+.........+ .++
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l-----~~~ 115 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPL-----LLK 115 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhh-----hcc
Confidence 45689999999 999999988765544345677777765 46799999999999887643321111 122
Q ss_pred cCCCCccccEEEEEEEEEecccchHHHHHhhccccccCCCCccccccccccCCceEEEEEEEEEeecCCCCCCCCCCCCC
Q 046822 373 DRRGDRSKGGEVMVSIWFGTQADEAFAEAWHSKAANVHFDGLCSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRF 452 (971)
Q Consensus 373 ~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~k~~~~p~l~~L~V~v~~a~~L~~~d~~~~~~~~ 452 (971)
. +.....|.|.+.+- .+.. ... ...-.++|++|.+.|.. ++
T Consensus 116 ~--~~~~~~g~iti~ae-----------e~~~--------------------~~~--~~~~~~~~~~ld~kd~f----~k 156 (529)
T KOG1327|consen 116 P--GKNAGSGTITISAE-----------EDES--------------------DND--VVQFSFRAKNLDPKDFF----SK 156 (529)
T ss_pred c--CccCCcccEEEEee-----------cccc--------------------cCc--eeeeeeeeeecCccccc----cc
Confidence 2 12223477766551 1100 000 11224568999999988 89
Q ss_pred CceEEEEEE--C----CeEEEeeecCCCCCCCCCCCcccceeEEEeecCC----CCeEEEEEEeCcCCCCCceeEEEEEe
Q 046822 453 PELHAKAQV--G----NQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPF----EDYLLISVEDHVGPGKDEIVGKVLIP 522 (971)
Q Consensus 453 ~dpyv~v~~--g----~~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~----~~~L~v~V~d~d~~~~d~~iG~~~i~ 522 (971)
+|||..++- + ...++|.+. +++++|.|.+. .+...... ...+.+.+||++..+++++||++..+
T Consensus 157 sd~~l~~~~~~~d~s~~~~~~tEv~-----~n~l~p~w~~~-~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt 230 (529)
T KOG1327|consen 157 SDPYLEFYKRVDDGSTQMLYRTEVV-----KNTLNPQWAPF-SISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTT 230 (529)
T ss_pred CCcceEEEEecCCCceeecccccee-----ccCCCCccccc-ccchhhhcccCCCCceEEEEeccCCCCCcCceeEeccc
Confidence 999998765 2 258899999 99999999884 33222211 34788999999988889999999999
Q ss_pred cccccc
Q 046822 523 VSAVER 528 (971)
Q Consensus 523 L~~l~~ 528 (971)
++++..
T Consensus 231 ~~~~~~ 236 (529)
T KOG1327|consen 231 LSELQE 236 (529)
T ss_pred HHHhcc
Confidence 998864
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.8e-06 Score=77.94 Aligned_cols=110 Identities=25% Similarity=0.336 Sum_probs=78.9
Q ss_pred EEEEEEeeeCCCCCCc-----------cCCCCcccCcEEEEEE----CCEEEeeecccCCCCCeecceeEEEee------
Q 046822 600 LEMGILGATGLMPMKF-----------KEGKGGSVDAYCVAKY----GQKWVRTRTVVDSLSPKWNEQYTWEVF------ 658 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~-----------~~~~g~s~dpy~~~~~----g~~~~rT~~~~~~~nP~Wne~~~~~v~------ 658 (971)
|.|.|++|.||.++-. ...-|- ++||.+.+ +.+..+|+++.++..|.|+..++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGV--N~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~ 78 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGV--NSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRN 78 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceeccc--ceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcC
Confidence 4688899999875221 012333 89999996 467799999999999999999999875
Q ss_pred --CC--------CcEEEEEEEeCCCCCccc-cCCCCCCCceeEEEEEEcccccCC-ceEeeeEec
Q 046822 659 --DP--------CTVITVGVFDNCSLDKNI-INNSGGRDSRIGKVRIRLSTLESD-RVYTHSYPL 711 (971)
Q Consensus 659 --~~--------~~~l~i~V~D~~~~~~~~-~~~~~~~d~~iG~~~i~l~~l~~~-~~~~~~~~L 711 (971)
.. ...+.++||....-+... ......+|-+||.+.||+.+|... ...+.|||+
T Consensus 79 ~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 79 SGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 21 128999999987543100 011245788899999999998543 335889985
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.1e-05 Score=90.46 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHhhhccccChhhH--------HHHHHHHHHHHhhhhhhhhhhhhhheeeccccCCc---
Q 046822 879 LRSVAGRIQTVVGDMATQGERFQALISWRDPRAT--------FLFVIFCLFAAIGFYAVPVRVVFALSGVYVLRPPR--- 947 (971)
Q Consensus 879 ~~~~~~~vQ~~~~~~a~~~Er~~~l~~W~~p~~t--------~~~~~~~~~~~~~~~~vp~r~i~l~~g~~~~r~p~--- 947 (971)
+-.-+..++.++++|++.-||+-|.|+=+-||-. .+++-++++..++.-++=.+.+-+++|+-++-.|-
T Consensus 280 v~~~~~p~mh~l~di~Dt~ERfaNaLSPTpPFp~~~~RlRLa~~l~p~~l~Sl~~ssy~~~K~~tF~~Gf~FFGdPiI~r 359 (642)
T PF11696_consen 280 VWKKMRPIMHMLGDITDTWERFANALSPTPPFPRHTPRLRLAAILAPLLLASLFVSSYMFVKGTTFGFGFGFFGDPIITR 359 (642)
T ss_pred HHHhhhhHHHHHhhHHHHHHHHhhccCCCCCCCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhHHhhccHHHHH
Confidence 4556778999999999999999999988777632 23333333333333444466666778887766663
Q ss_pred ----ccCCCCCh------hhhhhhcCCCCccC
Q 046822 948 ----FRSKLPSP------ALSFFRRLPSKADT 969 (971)
Q Consensus 948 ----~~~~~~~~------~~~~~~r~p~~~~~ 969 (971)
+-.++|++ ---.|+.+|+++..
T Consensus 360 ~~~~Lnr~~P~W~k~leLrntlLkGVPTNAQL 391 (642)
T PF11696_consen 360 GIDYLNRKYPNWQKLLELRNTLLKGVPTNAQL 391 (642)
T ss_pred HHHHHhccCCCHHHHHHHHHHHhccCCchHHH
Confidence 33456664 22358889998753
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.3e-05 Score=92.87 Aligned_cols=119 Identities=13% Similarity=0.236 Sum_probs=89.1
Q ss_pred CeEEEEEEEEeeCCCCCC----C-CCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 5 KEKLVVEVIAAHNLMPKD----G-EGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d----~-~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
-|.|.++|.+|+-+...- . ....+|||.|.+++. ..|| .+..||.|||+|.+.+....+ ..+.|.|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~---~~~~f~vk~ 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLD---STITITLKT 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecC---CcEEEEEec
Confidence 378999999998443221 1 112399999999976 4788 556699999999999887542 579999988
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeee-EEEEEEEeeeccc
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRG-EISLKLFVSTTEE 137 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G-~i~l~~~~~~~~~ 137 (971)
...+||.+.||..++.. +......||++.....+. ..| .|++++.|.+-..
T Consensus 83 ------~~~~ig~~~~p~~~~~~-g~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 83 ------KCSILGRFHIQAHQIVT-EASFINGFFPLIMENGKP-NPELKLRFMLWFRPAEL 134 (758)
T ss_pred ------CCeEEEEEEEEHHHhhC-CCcccceEEEcccCCCCC-CCCCEEEEEEEEEEhhh
Confidence 26899999999999975 333356899998775543 344 8889999887543
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00078 Score=73.67 Aligned_cols=127 Identities=19% Similarity=0.291 Sum_probs=98.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCC----CCCcceEEEEEEeCCCCC
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIA----ELPYKHIEVNVFNERRSS 83 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~----~l~~~~L~i~V~d~~~~~ 83 (971)
+.|.|++|+|.+... .-.-.+..+++++...|..+..+-.|.||..+.+++.... +.+...|++++|..+...
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 689999999998652 3455788899999999999999999999999999975432 456789999999998444
Q ss_pred CCCceeEEEEEeCccc---cccCCcccceEEEeEeCC-CCCeeeeEEEEEEEeeeccc
Q 046822 84 NSRNFLGKVRAPCSQL---CKNEGEATAQLYTLEKRS-LFSHIRGEISLKLFVSTTEE 137 (971)
Q Consensus 84 ~~d~~lG~~~i~l~~l---~~~~~~~~~~w~~L~~~~-~~~~~~G~i~l~~~~~~~~~ 137 (971)
...+.+|.+.++|..+ ...+......||+|..-+ ...+.+=+|.+.+.+.+...
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 4789999999999998 433334556899997652 22345678888888766554
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.7e-06 Score=99.08 Aligned_cols=110 Identities=24% Similarity=0.293 Sum_probs=89.5
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
.+++|.|-|.-|++|+--..+..+||||+..+.. .+++|++.++|.||.|||...+.--..+.++...|.++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 4689999999999996555466899999999974 26899999999999999999988443444556899999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeC
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~ 116 (971)
.+.+. .+.|||.+.|+|.++....+ ...||+|...
T Consensus 1602 ~~~~~-en~~lg~v~i~L~~~~l~kE--~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1602 NGGLL-ENVFLGGVNIPLLKVDLLKE--SVGWYNLGAC 1636 (1639)
T ss_pred cccee-eeeeeeeeecchhhcchhhh--hcceeecccc
Confidence 99876 78999999999999854322 2489999754
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.6e-05 Score=94.60 Aligned_cols=103 Identities=22% Similarity=0.248 Sum_probs=83.8
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-----CEEEeeecccCCCCCeecceeEEEe---eCCC-cEEEEE
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-----QKWVRTRTVVDSLSPKWNEQYTWEV---FDPC-TVITVG 667 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-----~~~~rT~~~~~~~nP~Wne~~~~~v---~~~~-~~l~i~ 667 (971)
.|.|.|.|.-|+||+-.. .|.-|||||+..+- ..+.||+++.+|.||.|||...+.- .... ..|++.
T Consensus 1523 ~~~LtImV~H~K~L~~Lq----dg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~s 1598 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQ----DGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVS 1598 (1639)
T ss_pred CceEEEEhhhhccccccc----CCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeee
Confidence 588999999999997553 34555999999982 2358999999999999999877652 2333 499999
Q ss_pred EEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 668 VFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
||.++.+. ...++|.+.|+|.++.-.+....||+|-
T Consensus 1599 Vls~~~~~---------en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1599 VLSNGGLL---------ENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred eeccccee---------eeeeeeeeecchhhcchhhhhcceeecc
Confidence 99998775 7899999999999987766667999985
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.5e-05 Score=69.83 Aligned_cols=105 Identities=20% Similarity=0.318 Sum_probs=77.9
Q ss_pred EEEEEEEeeCCCCCCC-------------CCCCCcEEEEEEc----CeEEEeecccCCCCCeeeeeeEEecCC-------
Q 046822 8 LVVEVIAAHNLMPKDG-------------EGSSSPFVEVEFE----KQILRTQVKYKDLNPIWNEKLVFDVPD------- 63 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~-------------~g~~dPyv~v~~~----~~~~~T~~~~~t~nP~wne~f~f~v~~------- 63 (971)
|.|.|++|.+|.+.-. .=..|+||.+.+. ++.++|+++-++..|.|+..++|.++-
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4688999999963210 1135899999853 468999999999999999999998751
Q ss_pred -----CCCCCcceEEEEEEeCCCCC---------CCCceeEEEEEeCccccccCCcccceEEEe
Q 046822 64 -----IAELPYKHIEVNVFNERRSS---------NSRNFLGKVRAPCSQLCKNEGEATAQLYTL 113 (971)
Q Consensus 64 -----~~~l~~~~L~i~V~d~~~~~---------~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L 113 (971)
.+.+....+.|+|||...-+ .+|-+||.+.||+.+|....... ..||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGi-tGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGI-TGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCc-cccccC
Confidence 11245678999999975422 24678999999999997654433 478875
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0035 Score=68.67 Aligned_cols=245 Identities=16% Similarity=0.204 Sum_probs=148.5
Q ss_pred EEEEEEEeecCCCCCCCCeEEEEEECCeeeeeeeecCC-CCccccEEEEeccC-------CCcc--eEEEEEecC--CCC
Q 046822 274 LYVRVVKARDISLFGGGEIVAEVKLGNYRGITKRVSSN-HLQWDQVFAFSKDC-------IQSS--AAEIFVKES--DKD 341 (971)
Q Consensus 274 L~V~v~~a~~L~~~~~~dpyV~v~~~~~~~kT~~~~~~-nP~wne~f~f~~~~-------~~~~--~l~v~v~D~--~~d 341 (971)
+.|+|++|++++....-.-.+..+++|....|..+..+ +|.||..+.+.++. .+.. +|+++-.|. ...
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~r 81 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKR 81 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcc
Confidence 56899999999933455678889999999999999999 99999999998763 2333 455555663 788
Q ss_pred cccEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC-ccccEEEEEEEEEecccch---HHH-HHhhccccccC------
Q 046822 342 DFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGD-RSKGGEVMVSIWFGTQADE---AFA-EAWHSKAANVH------ 410 (971)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~i~l~~~~~~~~d~---~~~-~~~~~~~~~~~------ 410 (971)
+.||.+.+||.........+....+.||+|-+.+++ +...-+|.+.+.+-..... .+. ..+........
T Consensus 82 e~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 161 (340)
T PF12416_consen 82 ESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVPPPN 161 (340)
T ss_pred eeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCcccc
Confidence 999999999998822222233577899999876332 1134577777766432221 010 00000000000
Q ss_pred --------------CCCccccccccccCCceEEEEEEEEEeecCCCCCCCCCC--CCCCceEEEEEECCeEEEeeecCCC
Q 046822 411 --------------FDGLCSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAM--MRFPELHAKAQVGNQFLKTRIAAPS 474 (971)
Q Consensus 411 --------------~~~~~~~~~k~~~~p~l~~L~V~v~~a~~L~~~d~~~~~--~~~~dpyv~v~~g~~~~rT~~~~~~ 474 (971)
.++.-++.+.. ..-.+..|.|++-.|++|...-..... .+....|...++=+....|...
T Consensus 162 ~~~~~~~l~~~l~~~eg~lQIGp~~-~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F--- 237 (340)
T PF12416_consen 162 SLLSPATLIPVLLEDEGLLQIGPPD-LCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPF--- 237 (340)
T ss_pred cccCccceeEEEccCCceEeeCCch-hcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeec---
Confidence 00000111100 012355899999999998766211000 0235677777774445566666
Q ss_pred CCCCCCCCccc--ceeEEEeec---------CCCCeEEEEEEeCcCCCCCceeEEEEEeccccccc
Q 046822 475 ATRSLSNPCWN--EDLLFVVAE---------PFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERR 529 (971)
Q Consensus 475 ~~~~~~nP~w~--e~f~f~~~~---------~~~~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~ 529 (971)
....+|.|. +..-+.+.. .....|.|.++.. +..||.+.|++..+...
T Consensus 238 --~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g-----~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 238 --KSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG-----NQSLGSTSVPLQPLLPK 296 (340)
T ss_pred --cccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC-----CcEEEEEEEEhhhccCC
Confidence 556667553 333244431 1234677777764 56899999999988644
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00018 Score=84.89 Aligned_cols=87 Identities=22% Similarity=0.422 Sum_probs=72.7
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEE-ECCEEEeeecccCCCCCeecceeEEEeeCCCc-EEEEEEEeCCC
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAK-YGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCT-VITVGVFDNCS 673 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~-~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~-~l~i~V~D~~~ 673 (971)
-.|...+++++|+ |+. . |+|+++- +|.+.+||.+.++|+||+||+...|.|..... ..+|.|||.+.
T Consensus 52 ~~~~~~~~~~~~~----~~~------~-~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (644)
T PLN02964 52 FSGIALLTLVGAE----MKF------K-DKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR 120 (644)
T ss_pred ccCeEEEEeehhh----hcc------C-CcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence 3588999999998 432 3 8888665 69999999999999999999999999885332 56999999998
Q ss_pred CCccccCCCCCCCceeEEEEEEcccccCC
Q 046822 674 LDKNIINNSGGRDSRIGKVRIRLSTLESD 702 (971)
Q Consensus 674 ~~~~~~~~~~~~d~~iG~~~i~l~~l~~~ 702 (971)
++ +++++|.|+++|.++...
T Consensus 121 ~s---------~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 121 LS---------KNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CC---------HHHhhhheeecHhhccHH
Confidence 86 899999999999887543
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00022 Score=59.96 Aligned_cols=82 Identities=13% Similarity=0.213 Sum_probs=65.4
Q ss_pred EEEEEEeecCC----CCCCCCeEEEEEEC--C-eeeeeeeecCC-CCccccEEEEecc--CCCcceEEEEEecC-CCCcc
Q 046822 275 YVRVVKARDIS----LFGGGEIVAEVKLG--N-YRGITKRVSSN-HLQWDQVFAFSKD--CIQSSAAEIFVKES-DKDDF 343 (971)
Q Consensus 275 ~V~v~~a~~L~----~~~~~dpyV~v~~~--~-~~~kT~~~~~~-nP~wne~f~f~~~--~~~~~~l~v~v~D~-~~d~~ 343 (971)
.++|++++||. -+..+.-|++-.+. . -..||.+.+.. ||+|+|+|.|.+. .++...|.+.|+.. .+.+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~RKe~ 81 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTPRKRT 81 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCCccce
Confidence 47899999997 33355667764443 2 56788888888 9999999999876 55677899999998 78899
Q ss_pred cEEEEEEccccCC
Q 046822 344 LGRIWFDLNEVPR 356 (971)
Q Consensus 344 lG~~~i~l~~l~~ 356 (971)
||.|.++|+++-.
T Consensus 82 iG~~sL~l~s~ge 94 (103)
T cd08684 82 IGECSLSLRTLST 94 (103)
T ss_pred eeEEEeecccCCH
Confidence 9999999987753
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00035 Score=58.75 Aligned_cols=87 Identities=13% Similarity=0.237 Sum_probs=66.3
Q ss_pred EEEEEEeeCCCCCCCCCCCCc--EEE--EEEc-CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCC
Q 046822 9 VVEVIAAHNLMPKDGEGSSSP--FVE--VEFE-KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSS 83 (971)
Q Consensus 9 ~V~V~~a~~L~~~d~~g~~dP--yv~--v~~~-~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~ 83 (971)
-++|+.|+||.--..-| -+| |++ +.+. ....+|++++...||+|.|+|.|.+.. .++++-.|-|.|+.+-.
T Consensus 2 witv~~c~d~s~~~~~~-e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l-~qL~~V~L~fsv~~~~~-- 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCG-ENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKL-QNLQTVRLVFKIQTQTP-- 77 (103)
T ss_pred EEEEEEecccccccccC-cCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHH-hhccceEEEEEeeccCC--
Confidence 37899999996543222 344 443 2333 347899999999999999999999874 46777899999999433
Q ss_pred CCCceeEEEEEeCcccc
Q 046822 84 NSRNFLGKVRAPCSQLC 100 (971)
Q Consensus 84 ~~d~~lG~~~i~l~~l~ 100 (971)
+...||.|.+.++++-
T Consensus 78 -RKe~iG~~sL~l~s~g 93 (103)
T cd08684 78 -RKRTIGECSLSLRTLS 93 (103)
T ss_pred -ccceeeEEEeecccCC
Confidence 6799999999999984
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00059 Score=80.71 Aligned_cols=86 Identities=19% Similarity=0.244 Sum_probs=73.3
Q ss_pred EEEEEEEEEeecCCCCCCCCCCCCCCceE-EEEEECCeEEEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEEEEe
Q 046822 428 WYLRVSVIEAQDIVPGDKGSAMMRFPELH-AKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVED 506 (971)
Q Consensus 428 ~~L~V~v~~a~~L~~~d~~~~~~~~~dpy-v~v~~g~~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d 506 (971)
+++.+++++|+ |+ ..|+| +.+++|.+++||.+. +++.||+||+...|.+.........+.|||
T Consensus 54 ~~~~~~~~~~~----~~-------~~~~~~~~~~~g~~~f~t~~~-----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 117 (644)
T PLN02964 54 GIALLTLVGAE----MK-------FKDKWLACVSFGEQTFRTETS-----DSTDKPVWNSEKKLLLEKNGPHLARISVFE 117 (644)
T ss_pred CeEEEEeehhh----hc-------cCCcEEEEEEecceeeeeccc-----cccCCcccchhhceEeccCCcceEEEEEEe
Confidence 47899999986 33 34776 556789999999999 999999999999998877666677999999
Q ss_pred CcCCCCCceeEEEEEeccccccc
Q 046822 507 HVGPGKDEIVGKVLIPVSAVERR 529 (971)
Q Consensus 507 ~d~~~~d~~iG~~~i~L~~l~~~ 529 (971)
++..+.++.+|.|+++|.++..+
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHH
Confidence 99999999999999999887655
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00042 Score=74.51 Aligned_cols=126 Identities=16% Similarity=0.238 Sum_probs=93.6
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc-----CeEEEeecccCCCCCeeeeeeEEecCCCC--------CCCcce
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE-----KQILRTQVKYKDLNPIWNEKLVFDVPDIA--------ELPYKH 71 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~v~~~~--------~l~~~~ 71 (971)
...|.+.|+++++++...+-.-.|-||++.+. .++.+|.+++.|.+|.|+|.|.+.+.... .+....
T Consensus 366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 34566778888888765433345789998874 34678889999999999999999986521 133468
Q ss_pred EEEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 72 IEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 72 L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
+.|++|+...|.++|.|+|.+.+.|..|... .+.. ..|+|.++. ..+.|.|.+++.+..
T Consensus 446 ~kfeifhkggf~rSdkl~gt~nikle~Len~-cei~-e~~~l~DGR--K~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENM-CEIC-EYLPLKDGR--KAVGGKLEVKVRIRQ 504 (523)
T ss_pred eeEEEeeccccccccceeceeeeeehhhhcc-cchh-hceeccccc--cccCCeeEEEEEEec
Confidence 9999999999988999999999999888532 2222 347776542 357799999988754
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.00078 Score=72.04 Aligned_cols=108 Identities=20% Similarity=0.267 Sum_probs=86.5
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-CCE----EEeeecccCCCCCeecceeEEEeeCCCcEEEEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-GQK----WVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVF 669 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-g~~----~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~ 669 (971)
...|.|+|.|++|++|... -+.+..++|||+|.+ ++. ..+|+...++++|.+.++..|.-..+...|.++||
T Consensus 266 d~~g~l~vEii~ar~l~~k---~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~ 342 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVK---PGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVW 342 (405)
T ss_pred cccCceeEEEEeccccccc---CCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEe
Confidence 4579999999999999863 234444599999997 332 36888889999999999999988888889999999
Q ss_pred eCCCCCccccCCCCCCCceeEEEEEEcccccCCc-eEeeeEecee
Q 046822 670 DNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDR-VYTHSYPLLM 713 (971)
Q Consensus 670 D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~-~~~~~~~L~~ 713 (971)
-.- ++-..+.|+|.+.|-|.+|.... ....||+|..
T Consensus 343 gdy--------gRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 343 GDY--------GRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred ccc--------cccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 642 13458899999999999997655 6689999874
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0012 Score=70.79 Aligned_cols=109 Identities=27% Similarity=0.399 Sum_probs=85.9
Q ss_pred CCCeEEEEEEEEeeCCCCCCCCC-CCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEE
Q 046822 3 DGKEKLVVEVIAAHNLMPKDGEG-SSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNV 76 (971)
Q Consensus 3 ~~~~~L~V~V~~a~~L~~~d~~g-~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V 76 (971)
+..|.|.|.|+.|++|..+-..+ .++|||+|++.. .+.+|+...+|+.|.|.+...|.-..+. ..|.+.|
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~----k~Lq~tv 341 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPG----KYLQGTV 341 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCc----cEEEEEE
Confidence 35678999999999998876544 689999999874 2678999999999999998888866554 8999999
Q ss_pred Ee-CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 77 FN-ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 77 ~d-~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
|. +.++- .+.|+|.+.+-+.++..... ....||+|-..+
T Consensus 342 ~gdygRmd-~k~fmg~aqi~l~eL~ls~~-~~igwyKlfgss 381 (405)
T KOG2060|consen 342 WGDYGRMD-HKSFMGVAQIMLDELNLSSS-PVIGWYKLFGSS 381 (405)
T ss_pred eccccccc-hHHHhhHHHHHhhhhccccc-cceeeeeccCCc
Confidence 95 44443 67899999999999865332 345899997653
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0024 Score=68.93 Aligned_cols=119 Identities=21% Similarity=0.286 Sum_probs=91.6
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE---C--CEEEeeecccCCCCCeecceeEEEeeC-C--Cc-------
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY---G--QKWVRTRTVVDSLSPKWNEQYTWEVFD-P--CT------- 662 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~---g--~~~~rT~~~~~~~nP~Wne~~~~~v~~-~--~~------- 662 (971)
-.|++.|+++.+++... |.... |-|+.+++ + .+..+|.+++++.+|.|.|.|-+.+.. + +.
T Consensus 367 ~elel~ivrg~~~pvp~---gp~hl-d~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fk 442 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPG---GPMHL-DQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFK 442 (523)
T ss_pred hHhHHHHhhcccCCCCC---CchhH-HhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHH
Confidence 45778888999887532 11223 88998886 2 345788899999999999999999875 2 21
Q ss_pred --EEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcc-cceEEEEEEEEe
Q 046822 663 --VITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVK-KMGELHLAVRFS 732 (971)
Q Consensus 663 --~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~f~ 732 (971)
-+.|++|....|. .+|.++|.+.|.|..|++.......|+|++ |.| ..|.|++.++..
T Consensus 443 r~g~kfeifhkggf~--------rSdkl~gt~nikle~Len~cei~e~~~l~D----GRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 443 RLGKKFEIFHKGGFN--------RSDKLTGTGNIKLEILENMCEICEYLPLKD----GRKAVGGKLEVKVRIR 503 (523)
T ss_pred hcCeeEEEeeccccc--------cccceeceeeeeehhhhcccchhhceeccc----cccccCCeeEEEEEEe
Confidence 6899999987664 589999999999999998777777889875 322 258899988865
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.069 Score=51.43 Aligned_cols=130 Identities=17% Similarity=0.231 Sum_probs=91.6
Q ss_pred CCeEEEEEEEEeeCCCCCCCC--CCCCc--EEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCC--C--------CCc
Q 046822 4 GKEKLVVEVIAAHNLMPKDGE--GSSSP--FVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIA--E--------LPY 69 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~--g~~dP--yv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~--~--------l~~ 69 (971)
....|+++|..++-...--.. +..+. .+-+.+++|+++|+.+..+.+|.++|.|.|.+.... . -..
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 456789999999866532211 33333 455567799999999999999999999999986532 0 013
Q ss_pred ceEEEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCC---eeeeEEEEEEEeeecc
Q 046822 70 KHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFS---HIRGEISLKLFVSTTE 136 (971)
Q Consensus 70 ~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~---~~~G~i~l~~~~~~~~ 136 (971)
+.|.+.|.--+..+ ...++|...++...+...+.... +++++-.+... -..|-|.+++.+.+..
T Consensus 87 ~pihivli~~d~~~-~~~Lv~s~~ldWR~vL~s~~~~~--~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 87 DPIHIVLIRTDPSG-ETTLVGSHFLDWRKVLCSGNGST--SFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred CceEEEEEEecCCC-ceEeeeeceehHHHHhccCCCcc--ceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 57888888877765 45899999999999876544221 45655543322 2679999999987644
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.076 Score=62.86 Aligned_cols=95 Identities=21% Similarity=0.316 Sum_probs=72.5
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-C------CEEEeeeccc-CCCCCeecc-eeEEEe-eCC-CcEE
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-G------QKWVRTRTVV-DSLSPKWNE-QYTWEV-FDP-CTVI 664 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-g------~~~~rT~~~~-~~~nP~Wne-~~~~~v-~~~-~~~l 664 (971)
-.+.+.|+|++++=|...+ . ..||.|.+ | .+.+||+++. ++.||+|+| .|.|.- .-| -..|
T Consensus 701 IA~t~sV~VISgqFLSdrk-------v-gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~l 772 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRK-------V-GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASL 772 (1189)
T ss_pred EEeeEEEEEEeeeeccccc-------c-CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhhe
Confidence 3478999999999996532 3 57999996 4 2458999985 578999996 788853 333 3489
Q ss_pred EEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceec
Q 046822 665 TVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLML 714 (971)
Q Consensus 665 ~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~ 714 (971)
+|.||++. ..+||.-.+|+..|..|. +..-|.+.
T Consensus 773 RiavyeEg-------------gK~ig~RIlpvd~l~~GY---rhv~LRse 806 (1189)
T KOG1265|consen 773 RIAVYEEG-------------GKFIGQRILPVDGLNAGY---RHVCLRSE 806 (1189)
T ss_pred eeeeeccC-------------CceeeeeccchhcccCcc---eeEEecCC
Confidence 99999974 579999999999999887 34555543
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.07 Score=63.16 Aligned_cols=88 Identities=26% Similarity=0.404 Sum_probs=68.3
Q ss_pred CCCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-------eEEEeeccc-CCCCCeeee-eeEEe-cCCCCCCCcce
Q 046822 2 GDGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-------QILRTQVKY-KDLNPIWNE-KLVFD-VPDIAELPYKH 71 (971)
Q Consensus 2 ~~~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~~-~t~nP~wne-~f~f~-v~~~~~l~~~~ 71 (971)
|.-.+.+.|+|+++.=|..++ ..-||.|.+-+ ..+||++.. ++.||+|+| .|.|. |.-++. ..
T Consensus 699 gvIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL---A~ 771 (1189)
T KOG1265|consen 699 GVIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL---AS 771 (1189)
T ss_pred ceEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch---hh
Confidence 334578999999999887665 45899999853 357888876 899999995 58887 333443 68
Q ss_pred EEEEEEeCCCCCCCCceeEEEEEeCccccc
Q 046822 72 IEVNVFNERRSSNSRNFLGKVRAPCSQLCK 101 (971)
Q Consensus 72 L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~ 101 (971)
|+|.||+.+ .+|||+=.+|++.+..
T Consensus 772 lRiavyeEg-----gK~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 772 LRIAVYEEG-----GKFIGQRILPVDGLNA 796 (1189)
T ss_pred eeeeeeccC-----CceeeeeccchhcccC
Confidence 999999854 4799999999999853
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.15 Score=49.80 Aligned_cols=91 Identities=15% Similarity=0.121 Sum_probs=62.0
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc--Ce----EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE--KQ----ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~--~~----~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
+..++|+|+++.++...+ .++-||.+.+- ++ ...|+.+.. .++.|||...|.+.-.+--.+..|.|.||+
T Consensus 7 ~~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~ 82 (158)
T cd08398 7 NSNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICS 82 (158)
T ss_pred CCCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEE
Confidence 457899999999998643 46888888653 33 234544443 679999999998753332235799999999
Q ss_pred CCCCC---CCCceeEEEEEeCccc
Q 046822 79 ERRSS---NSRNFLGKVRAPCSQL 99 (971)
Q Consensus 79 ~~~~~---~~d~~lG~~~i~l~~l 99 (971)
...-. .....+|.+.++|=+.
T Consensus 83 ~~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 83 VKGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred EecccCCCCceEEEEEEEEEEECC
Confidence 76421 0124688888877663
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.32 Score=46.96 Aligned_cols=125 Identities=15% Similarity=0.200 Sum_probs=80.0
Q ss_pred eEEEEEEEeeeCCCCCCc-cCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCC--------------Cc
Q 046822 598 GVLEMGILGATGLMPMKF-KEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDP--------------CT 662 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~-~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~--------------~~ 662 (971)
..|+++|++++-...--. -++.-.+ --++-+.+++++++|+.+.-+.+|.|+|.|-|++... ++
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s-~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~ 87 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCS-TFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISD 87 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCce-EEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCC
Confidence 456777777765421000 0012222 2344455689999999999999999999999988632 34
Q ss_pred EEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceE--eeeEeceecCCCCcccceEEEEEEEEe
Q 046822 663 VITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVY--THSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 663 ~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~--~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
.|++.|.-.|..+ ...++|.-.+....+...... .....|.......+-..|.|++.+..-
T Consensus 88 pihivli~~d~~~---------~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELl 150 (156)
T PF15627_consen 88 PIHIVLIRTDPSG---------ETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELL 150 (156)
T ss_pred ceEEEEEEecCCC---------ceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEee
Confidence 7888888877543 448999999998886432211 233455543332222468888888754
|
|
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.074 Score=55.61 Aligned_cols=131 Identities=18% Similarity=0.264 Sum_probs=84.6
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-EEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCC
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-KWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSL 674 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~ 674 (971)
..|.|.++++.++||..... -+|.+.+-||++.++. ...||.+-.....-.|.|.|..++... .++.+-||.|+.-
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~--~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-~vl~~lvySW~pq 125 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQ--QKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-EVLHYLVYSWPPQ 125 (442)
T ss_pred ccceEEEEEecccccccChh--ccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-eeeeEEEeecCch
Confidence 45899999999999986543 2344448999999974 456777666666678999999888753 3688888888732
Q ss_pred CccccCCCCCCCc--eeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEeecchhHHHHhhcCCCCCCCc
Q 046822 675 DKNIINNSGGRDS--RIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSCANLVNMLHMYAMPLLPKMH 752 (971)
Q Consensus 675 ~~~~~~~~~~~d~--~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~~~~~~~~~~~p~~p~~~ 752 (971)
. ++. ..| .+.+..+.+.. -.+-+.|. ...+|++.+.+.|. ++.+.|-+..+|++.
T Consensus 126 ~---------RHKLC~~g--~l~~~~v~rqs-pd~~~Al~------lePrgq~~~r~~~~-----Dp~av~rR~~~Prlr 182 (442)
T KOG1452|consen 126 R---------RHKLCHLG--LLEAFVVDRQS-PDRVVALY------LEPRGQPPLRLPLA-----DPEAVTRRTVNPRLR 182 (442)
T ss_pred h---------hccccccc--hhhhhhhhhcC-Ccceeeee------cccCCCCceecccC-----ChHHHhhcccCcccc
Confidence 1 333 355 23333332211 12334443 13458899999764 566667777777754
|
|
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.26 Score=49.19 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=52.1
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--cCe----EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF--EKQ----ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
...++|+|+.+.+|..+ ....+-||.+.+ +++ ...|+.+.-..++.|||.+.|++.-.+--....|.|.||+
T Consensus 7 ~~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~ 84 (173)
T cd08693 7 EEKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYE 84 (173)
T ss_pred CCCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEE
Confidence 45789999999999862 234566777654 343 3456555555679999999998653322224799999999
Q ss_pred CCC
Q 046822 79 ERR 81 (971)
Q Consensus 79 ~~~ 81 (971)
...
T Consensus 85 ~~~ 87 (173)
T cd08693 85 VSK 87 (173)
T ss_pred ecc
Confidence 754
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.36 Score=47.22 Aligned_cols=84 Identities=23% Similarity=0.254 Sum_probs=59.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEE--CCeEE----EeeecCCCCCCCCCCCcccceeEEEee---cCCCCe
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQV--GNQFL----KTRIAAPSATRSLSNPCWNEDLLFVVA---EPFEDY 499 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~--g~~~~----rT~~~~~~~~~~~~nP~w~e~f~f~~~---~~~~~~ 499 (971)
.++|.|+++.++...+ .+|.||++.+ |++.. .|+.+ . ..++.|||-++|.+. -|.+..
T Consensus 9 ~~~v~i~~~~~~~~~~-------~~~l~V~v~l~~g~~~L~~pv~T~~v-----~-~~~~~WnEwL~fpI~i~dLPr~Ar 75 (158)
T cd08398 9 NLRIKILCATYVNVND-------IDKIYVRTGIYHGGEPLCDNVNTQRV-----P-CSNPRWNEWLDYDIYIPDLPRSAR 75 (158)
T ss_pred CeEEEEEeeccCCCCC-------cCeEEEEEEEEECCEEccCeeEeccc-----C-CCCCccceeEEcccchhcCChhhe
Confidence 4799999999986532 3588988865 66543 34433 2 357999999988763 345679
Q ss_pred EEEEEEeCcCCC----CCceeEEEEEeccc
Q 046822 500 LLISVEDHVGPG----KDEIVGKVLIPVSA 525 (971)
Q Consensus 500 L~v~V~d~d~~~----~d~~iG~~~i~L~~ 525 (971)
|.|.||+..... ....+|.+.++|=+
T Consensus 76 L~iti~~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 76 LCLSICSVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EEEEEEEEecccCCCCceEEEEEEEEEEEC
Confidence 999999965321 22469999988765
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.43 Score=47.61 Aligned_cols=86 Identities=20% Similarity=0.276 Sum_probs=59.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEE--CCeEE----EeeecCCCCCCCCCCCcccceeEEEee---cCCCCe
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQV--GNQFL----KTRIAAPSATRSLSNPCWNEDLLFVVA---EPFEDY 499 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~--g~~~~----rT~~~~~~~~~~~~nP~w~e~f~f~~~---~~~~~~ 499 (971)
.++|+|+.+.+|...+ ...+.||++.+ |++.. .|+.. .-..++.|||.+.|.+. -|.+..
T Consensus 9 ~f~i~i~~~~~~~~~~------~~~~l~V~~~lyhG~~~L~~p~~T~~~-----~~~~~~~Wnewl~F~I~i~dLPr~Ar 77 (173)
T cd08693 9 KFSITLHKISNLNAAE------RTMKVGVQAGLFHGGESLCKTVKTSEV-----SGKNDPVWNETLEFDINVCDLPRMAR 77 (173)
T ss_pred CEEEEEEEeccCccCC------CCceEEEEEEEEECCEEccCceEcccc-----CCCCccccceeEEcccchhcCChhHe
Confidence 4899999999997622 35688888755 76544 44444 33467999999988763 355678
Q ss_pred EEEEEEeCcCCC----------------CCceeEEEEEeccc
Q 046822 500 LLISVEDHVGPG----------------KDEIVGKVLIPVSA 525 (971)
Q Consensus 500 L~v~V~d~d~~~----------------~d~~iG~~~i~L~~ 525 (971)
|.|.||+..... .+..||.+.++|=+
T Consensus 78 Lciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 78 LCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred EEEEEEEecccccccccccccccccccCcceEEEEEeEEEEc
Confidence 999999864321 23578888777754
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=93.40 E-value=1.9 Score=41.52 Aligned_cols=114 Identities=21% Similarity=0.281 Sum_probs=75.0
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEE---Eeeecc-cCCCCCeecceeEEEee---CCC------cEE
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKW---VRTRTV-VDSLSPKWNEQYTWEVF---DPC------TVI 664 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~---~rT~~~-~~~~nP~Wne~~~~~v~---~~~------~~l 664 (971)
-.+.+.|++..+++.. .. -.||+.+.|+.. ..|... ..+..-.||+.|.+++. +.. ..+
T Consensus 7 f~~~l~i~~l~~~p~~-------~~-~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~ 78 (143)
T PF10358_consen 7 FQFDLTIHELENLPSS-------NG-KVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKEL 78 (143)
T ss_pred EEEEEEEEEeECcCCC-------CC-EEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEE
Confidence 3577889999998851 11 356666666553 444433 45567899999999875 221 178
Q ss_pred EEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccC--CceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 665 TVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLES--DRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 665 ~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
+|.|+....- ++...||++.|+|++... .......++|... .+....|++.+.+.
T Consensus 79 ~~~v~~~~~~---------~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~ 135 (143)
T PF10358_consen 79 KFSVFEVDGS---------GKKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLS 135 (143)
T ss_pred EEEEEEecCC---------CccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEE
Confidence 9999987421 133699999999999865 3455677887743 12346677777765
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.17 Score=53.03 Aligned_cols=118 Identities=15% Similarity=0.146 Sum_probs=79.1
Q ss_pred CCCeEEEEEEEEeeCCCCCCC--CCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 3 DGKEKLVVEVIAAHNLMPKDG--EGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 3 ~~~~~L~V~V~~a~~L~~~d~--~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
...|+|.+++.++++|.-... +-+-+-||++.++.+ +.||.+.....--.|.|+|..++.+. ..+.+-||.+
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-----~vl~~lvySW 122 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-----EVLHYLVYSW 122 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-----eeeeEEEeec
Confidence 457899999999999974432 446789999999976 67888888888889999999998754 5788888887
Q ss_pred CCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 80 RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
+.-. ++++.-.-.+.+..+...... .-+.|.- ..+|.+-+++.+.+
T Consensus 123 ~pq~-RHKLC~~g~l~~~~v~rqspd---~~~Al~l-----ePrgq~~~r~~~~D 168 (442)
T KOG1452|consen 123 PPQR-RHKLCHLGLLEAFVVDRQSPD---RVVALYL-----EPRGQPPLRLPLAD 168 (442)
T ss_pred Cchh-hccccccchhhhhhhhhcCCc---ceeeeec-----ccCCCCceecccCC
Confidence 7643 445433333444444322211 1133321 24577777776654
|
|
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=93.08 E-value=1.9 Score=41.56 Aligned_cols=122 Identities=20% Similarity=0.255 Sum_probs=78.1
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeE---EEeeccc-CCCCCeeeeeeEEecCC-----CCCCCcceEEEE
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQI---LRTQVKY-KDLNPIWNEKLVFDVPD-----IAELPYKHIEVN 75 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~---~~T~~~~-~t~nP~wne~f~f~v~~-----~~~l~~~~L~i~ 75 (971)
.-.+.|+|.+..+++. ....-||....++.. ..|.... .+-.-.|||.|.+.+.- ...++...+.|.
T Consensus 6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 3467899999999875 223445555555443 3444333 44457999999988532 123667899999
Q ss_pred EEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 76 VFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 76 V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
|+....-+ +...||.+.|+|+++..........-++|... ......|.+++.+..
T Consensus 82 v~~~~~~~-~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~---~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 82 VFEVDGSG-KKKVLGKVSINLAEYANEDEEPITVRLLLKKC---KKSNATLSISISLSE 136 (143)
T ss_pred EEEecCCC-ccceEEEEEEEHHHhhCcCCCcEEEEEeCccC---CCCCcEEEEEEEEEE
Confidence 99975433 23699999999999976542222233677654 133466677766654
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.83 Score=44.85 Aligned_cols=88 Identities=27% Similarity=0.318 Sum_probs=59.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEE--CCeEE----EeeecCCCCCCCCCCCcccceeEEEee---cCCCCe
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQV--GNQFL----KTRIAAPSATRSLSNPCWNEDLLFVVA---EPFEDY 499 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~--g~~~~----rT~~~~~~~~~~~~nP~w~e~f~f~~~---~~~~~~ 499 (971)
.++|.+....++...+. ...+.||++.+ |++.. .|... ....++.|||-+.|.+. -|.+..
T Consensus 9 ~~~i~i~~~~~~~~~~~-----~~~~l~V~~~l~~g~~~l~~~~~t~~~-----~~~~~~~Wne~l~F~i~~~~LP~~ar 78 (156)
T cd08380 9 NLRIKIHGITNINLLDS-----EDLKLYVRVQLYHGGEPLCPPQSTKKV-----PFSTSVTWNEWLTFDILISDLPREAR 78 (156)
T ss_pred CeEEEEEeeccccccCC-----CceeEEEEEEEEECCEEccCceeccCC-----cCCCCCcccceeEccchhhcCChhhe
Confidence 46788888877765221 35678888765 66422 33322 22367999999998753 355679
Q ss_pred EEEEEEeCcCCC--CCceeEEEEEecccc
Q 046822 500 LLISVEDHVGPG--KDEIVGKVLIPVSAV 526 (971)
Q Consensus 500 L~v~V~d~d~~~--~d~~iG~~~i~L~~l 526 (971)
|.|.||+.+... .+..||.+.++|=+.
T Consensus 79 L~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 79 LCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 999999976433 457899999988653
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.62 Score=45.75 Aligned_cols=94 Identities=17% Similarity=0.172 Sum_probs=62.3
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--cCe----EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF--EKQ----ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
+..++|+|....++...+ ....+-||.+.+ +++ ...|.......++.|||...|.+.-.+--....|.|.||+
T Consensus 7 ~~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~ 85 (156)
T cd08380 7 NFNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYA 85 (156)
T ss_pred CCCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEE
Confidence 356888999988887522 234566777655 343 2344433334689999999998654322224799999999
Q ss_pred CCCCC-CCCceeEEEEEeCccc
Q 046822 79 ERRSS-NSRNFLGKVRAPCSQL 99 (971)
Q Consensus 79 ~~~~~-~~d~~lG~~~i~l~~l 99 (971)
.+..+ ..+..||.+.++|=+.
T Consensus 86 ~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 86 VSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EecCCCCcceEEEEEeEEeEcc
Confidence 77543 1357899999987764
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.97 Score=44.38 Aligned_cols=69 Identities=22% Similarity=0.308 Sum_probs=50.5
Q ss_pred cccCcEEEEEE--CCEE----EeeecccCCCCCeecceeEEEee--C-C-CcEEEEEEEeCCCCCccccCCCCCCCceeE
Q 046822 621 GSVDAYCVAKY--GQKW----VRTRTVVDSLSPKWNEQYTWEVF--D-P-CTVITVGVFDNCSLDKNIINNSGGRDSRIG 690 (971)
Q Consensus 621 ~s~dpy~~~~~--g~~~----~rT~~~~~~~nP~Wne~~~~~v~--~-~-~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG 690 (971)
.+ |-||.+.+ |++. .+|+.+.-+..+.|||...|+|. + | .+.|.|+|||.+.- ++...||
T Consensus 29 ~~-~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~---------~~~~~vg 98 (159)
T cd08397 29 NS-DLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT---------GKAVPFG 98 (159)
T ss_pred CC-CEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC---------CCceEEE
Confidence 45 78888865 6554 46666655667899999888876 3 2 34999999998632 2577899
Q ss_pred EEEEEcccc
Q 046822 691 KVRIRLSTL 699 (971)
Q Consensus 691 ~~~i~l~~l 699 (971)
.+.++|-+-
T Consensus 99 ~~~~~lFd~ 107 (159)
T cd08397 99 GTTLSLFNK 107 (159)
T ss_pred EEEEeeECC
Confidence 999998763
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.7 Score=45.39 Aligned_cols=70 Identities=24% Similarity=0.275 Sum_probs=50.9
Q ss_pred CCCceEEEEEE--CCeEE----EeeecCCCCCCCCCCCcccceeEEEee---cCCCCeEEEEEEeCcCCCCCceeEEEEE
Q 046822 451 RFPELHAKAQV--GNQFL----KTRIAAPSATRSLSNPCWNEDLLFVVA---EPFEDYLLISVEDHVGPGKDEIVGKVLI 521 (971)
Q Consensus 451 ~~~dpyv~v~~--g~~~~----rT~~~~~~~~~~~~nP~w~e~f~f~~~---~~~~~~L~v~V~d~d~~~~d~~iG~~~i 521 (971)
..+|.||++.+ |++.. .|+.+ .-+..+.|||-+.|.+. -|.+..|.|.||+.+..++...+|.+.+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~-----~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~ 102 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYK-----PFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTL 102 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEcccc-----CCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEE
Confidence 45788888866 65533 44444 44567889999998874 3456799999999865556778999999
Q ss_pred eccc
Q 046822 522 PVSA 525 (971)
Q Consensus 522 ~L~~ 525 (971)
+|=+
T Consensus 103 ~lFd 106 (159)
T cd08397 103 SLFN 106 (159)
T ss_pred eeEC
Confidence 8855
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.68 Score=46.20 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=64.2
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc--Ce----EEEeeccc----CCCCCeeeeeeEEecCCCCCCCcceEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE--KQ----ILRTQVKY----KDLNPIWNEKLVFDVPDIAELPYKHIE 73 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~--~~----~~~T~~~~----~t~nP~wne~f~f~v~~~~~l~~~~L~ 73 (971)
-+..+.|+|.++.+++........|-||.+.+- ++ ...|+... -...+.|||...|.+.-.+--....|.
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 356789999999999987655567888888663 33 23444221 123577999999997432212247999
Q ss_pred EEEEeCCCCCC--------CCceeEEEEEeCccc
Q 046822 74 VNVFNERRSSN--------SRNFLGKVRAPCSQL 99 (971)
Q Consensus 74 i~V~d~~~~~~--------~d~~lG~~~i~l~~l 99 (971)
|.+|+...... .+..||.+.++|=+.
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 99999765321 246788888777663
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=89.97 E-value=1.3 Score=44.09 Aligned_cols=93 Identities=20% Similarity=0.303 Sum_probs=62.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEE--CCeEE----EeeecCCCCCCCCCCCcccceeEEEee---cCCCCe
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQV--GNQFL----KTRIAAPSATRSLSNPCWNEDLLFVVA---EPFEDY 499 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~--g~~~~----rT~~~~~~~~~~~~nP~w~e~f~f~~~---~~~~~~ 499 (971)
.++|+|..+.+++..... ...|.||++.+ |++.. .|+.... .+.-...+.|||-+.|.+. -|.+..
T Consensus 9 ~~~i~v~~~h~~~~~~~~----~~~~~~v~~~l~~g~~~L~~~~~T~~~~~-~~~f~~~~~Wnewl~F~i~i~~LPrear 83 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQ----SFEDFYLSCSLYHGGRLLCSPVTTKPVKI-TKSFFPRVVWDEWIEFPIPVCQLPRESR 83 (171)
T ss_pred cEEEEEEEeecCChHHhh----ccccEEEEEEEEECCEECcCceecccccc-ccCccccccccceEECccchhcCChhHE
Confidence 578999999999876654 46788988865 76544 3332200 0011235779999888763 355679
Q ss_pred EEEEEEeCcCCC---------CCceeEEEEEecccc
Q 046822 500 LLISVEDHVGPG---------KDEIVGKVLIPVSAV 526 (971)
Q Consensus 500 L~v~V~d~d~~~---------~d~~iG~~~i~L~~l 526 (971)
|.|.||+..... .+..||.+.++|=+.
T Consensus 84 L~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 84 LVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999999865433 356899998887653
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=89.54 E-value=2.7 Score=36.32 Aligned_cols=84 Identities=14% Similarity=0.176 Sum_probs=59.2
Q ss_pred CCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCCceeEEEEEeCccccccCC
Q 046822 26 SSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEG 104 (971)
Q Consensus 26 ~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~ 104 (971)
.++-.|++++++. ..+|.-+.. .+..|++.|.|++... ..|+|.||-.|- ..+.|-..+.|.+... +
T Consensus 8 ~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdRs-----RELEI~VywrD~----RslCav~~lrLEd~~~--~ 75 (98)
T cd08687 8 CSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELERS-----RELEIAVYWRDW----RSLCAVKFLKLEDERH--E 75 (98)
T ss_pred ccceEEEEEEcCeEEeecccccc-ccccccceeEEEeecc-----cEEEEEEEEecc----hhhhhheeeEhhhhcc--c
Confidence 3678899999974 677776654 5789999999998743 689999998765 3577777788887421 1
Q ss_pred cccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 105 EATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 105 ~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
. -.+|+ ++|.+...+.|
T Consensus 76 -~---~~~le-------pqg~l~~ev~f 92 (98)
T cd08687 76 -V---QLDME-------PQLCLVAELTF 92 (98)
T ss_pred -c---eeccc-------cccEEEEEEEe
Confidence 1 14444 35666666655
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=89.23 E-value=2.6 Score=42.11 Aligned_cols=69 Identities=19% Similarity=0.171 Sum_probs=45.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEE--CCeEE---EeeecCCCCCCCCCCCcccceeEEEee---cCCCCeE
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQV--GNQFL---KTRIAAPSATRSLSNPCWNEDLLFVVA---EPFEDYL 500 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~--g~~~~---rT~~~~~~~~~~~~nP~w~e~f~f~~~---~~~~~~L 500 (971)
.++|+|+.+..+ ..+.. .....||++.+ |++.. +|... .-+.++.|||-+.|.+. -|.+..|
T Consensus 11 ~friki~~~~~~-~~~~~----~~~~l~V~~~Ly~g~~~l~~~~T~~~-----~~~~~~~WnEwL~f~I~~~dLP~~arL 80 (178)
T cd08399 11 KFRVKILGIDIP-VLPRN----TDLTVFVEANIQHGQQVLCQRRTSPK-----PFTEEVLWNTWLEFDIKIKDLPKGALL 80 (178)
T ss_pred CEEEEEEeeccc-CcCCC----CceEEEEEEEEEECCeecccceeecc-----CCCCCccccccEECccccccCChhhEE
Confidence 478888887633 33322 33457777644 66533 45544 44567999999888763 3456689
Q ss_pred EEEEEeC
Q 046822 501 LISVEDH 507 (971)
Q Consensus 501 ~v~V~d~ 507 (971)
.|.||+.
T Consensus 81 c~ti~~~ 87 (178)
T cd08399 81 NLQIYCG 87 (178)
T ss_pred EEEEEEE
Confidence 9999986
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=87.72 E-value=3.1 Score=41.57 Aligned_cols=124 Identities=16% Similarity=0.113 Sum_probs=67.5
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--cCe---EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF--EKQ---ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~--~~~---~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
+..++|+|.++.++... ......-||.+.+ +++ ..+|+.+.-+.++.|||...|++.-.+--....|.|.||+.
T Consensus 9 ~~~friki~~~~~~~~~-~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 9 DRKFRVKILGIDIPVLP-RNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred CCCEEEEEEeecccCcC-CCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEE
Confidence 34688899998754432 1222334555543 333 23666666677899999999997644322357999999997
Q ss_pred CCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCC-eeeeEEEEEEEee
Q 046822 80 RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFS-HIRGEISLKLFVS 133 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~~ 133 (971)
....++....|... .+.. .+......|..+.--+.++ -.+|...+.++-.
T Consensus 88 ~~~~~~~~~~~~~~--~~~~--~~~~~~l~wvn~~LFD~~~~Lr~G~~~L~~W~~ 138 (178)
T cd08399 88 KAPALSSKKSAESP--SSES--KGKHQLLYYVNLLLIDHRFLLRTGEYVLHMWQI 138 (178)
T ss_pred ecCccccccccccc--cccc--ccccceEEEEEEEEEcCCCceecCCEEEEEecC
Confidence 54221112222210 0110 0112223455543322222 2469988888764
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER) | Back alignment and domain information |
|---|
Probab=86.75 E-value=0.08 Score=52.82 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=19.6
Q ss_pred HHHHHHHHh----cHHHHHhhhccccChhhHHHHHHHHHHHHhhhhhhhhhhhhhheeeccccCCcccCC
Q 046822 886 IQTVVGDMA----TQGERFQALISWRDPRATFLFVIFCLFAAIGFYAVPVRVVFALSGVYVLRPPRFRSK 951 (971)
Q Consensus 886 vQ~~~~~~a----~~~Er~~~l~~W~~p~~t~~~~~~~~~~~~~~~~vp~r~i~l~~g~~~~r~p~~~~~ 951 (971)
++...+.++ .....++.++.|+||..|..++++|++.+.+.-++++..++.+.-+-.+--|++-++
T Consensus 82 ~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~ 151 (169)
T PF02453_consen 82 VERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEK 151 (169)
T ss_dssp HHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG--------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHH
Confidence 444444444 447888899999999999999999999999999888887776655554444544443
|
Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A. |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=85.02 E-value=8 Score=33.58 Aligned_cols=82 Identities=13% Similarity=0.106 Sum_probs=55.2
Q ss_pred CcEEEEEECCEE-EeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCC
Q 046822 624 DAYCVAKYGQKW-VRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESD 702 (971)
Q Consensus 624 dpy~~~~~g~~~-~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~ 702 (971)
+..|+++++|+. .+|.... ..+..|++.|++++.. +..|+|.||=.| -..+=|-.-+.|.+...
T Consensus 10 eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD------------~RslCav~~lrLEd~~~- 74 (98)
T cd08687 10 EVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-SRELEIAVYWRD------------WRSLCAVKFLKLEDERH- 74 (98)
T ss_pred ceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-ccEEEEEEEEec------------chhhhhheeeEhhhhcc-
Confidence 889999998764 5666543 3578899999998753 458999999766 22445566667776322
Q ss_pred ceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 703 RVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 703 ~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
....+|. +.|.+..+++|
T Consensus 75 ---~~~~~le--------pqg~l~~ev~f 92 (98)
T cd08687 75 ---EVQLDME--------PQLCLVAELTF 92 (98)
T ss_pred ---cceeccc--------cccEEEEEEEe
Confidence 1223332 34888888877
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=83.30 E-value=6.4 Score=39.58 Aligned_cols=57 Identities=19% Similarity=0.378 Sum_probs=41.1
Q ss_pred EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCC-CceeEEEEEeC
Q 046822 39 ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNS-RNFLGKVRAPC 96 (971)
Q Consensus 39 ~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~-d~~lG~~~i~l 96 (971)
..+|.+.+.+.+|.|+|++.+.+.. +......|.|..++...-... ...+|-+.+||
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~-~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPI-DKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecCh-hhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 5789999999999999999999873 456678999999885542111 14455555554
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=82.23 E-value=5 Score=38.62 Aligned_cols=75 Identities=20% Similarity=0.225 Sum_probs=48.8
Q ss_pred EEeecccCC-CCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCC----ceeEEEEEeCccccccCCcccceEEEeE
Q 046822 40 LRTQVKYKD-LNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSR----NFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 40 ~~T~~~~~t-~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d----~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
..|+...-+ .++.|||...|.+.-.+--.+..|.|.||..+... .. ..||.+.++|=+.. +.
T Consensus 22 ~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~-~~~~~~~~lgw~n~~lFd~~---~~--------- 88 (142)
T PF00792_consen 22 QSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK-KSKKKKVPLGWVNLPLFDYR---GQ--------- 88 (142)
T ss_dssp EE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST-TT--EEEEEEEEEEESB-TT---SB---------
T ss_pred eeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC-ccccceeEEEEEEEEeECCC---Cc---------
Confidence 366666655 79999999999964322222479999999987754 23 68999999987752 11
Q ss_pred eCCCCCeeeeEEEEEEEee
Q 046822 115 KRSLFSHIRGEISLKLFVS 133 (971)
Q Consensus 115 ~~~~~~~~~G~i~l~~~~~ 133 (971)
-.+|...+.++-.
T Consensus 89 ------L~~G~~~L~lW~~ 101 (142)
T PF00792_consen 89 ------LRQGPQKLSLWPD 101 (142)
T ss_dssp ------BEEEEEEEE-EET
T ss_pred ------ccCCCEEEEEEcC
Confidence 1358888888543
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=82.13 E-value=9.1 Score=38.60 Aligned_cols=57 Identities=12% Similarity=0.243 Sum_probs=41.8
Q ss_pred EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCC---ceeEEEEEeC
Q 046822 39 ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSR---NFLGKVRAPC 96 (971)
Q Consensus 39 ~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d---~~lG~~~i~l 96 (971)
..+|.+.+...+|.|+|++.+.+. .+......|.|.+++...-..+| ..+|-+.+||
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP-~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIP-IEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecC-hhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 678888889999999999999987 34566789999999865321122 3455555555
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=81.93 E-value=7 Score=35.08 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=50.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--cCe----EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEF--EKQ----ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
.+.+.+...++.........++-||.+.+ +++ ...|+.+.-...+.|||...|.+.-.+--.+..|.|.+|+..
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 12 NLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 36677788877766543333578888865 343 335655555666899999999865333223579999999865
Q ss_pred C
Q 046822 81 R 81 (971)
Q Consensus 81 ~ 81 (971)
.
T Consensus 92 ~ 92 (100)
T smart00142 92 N 92 (100)
T ss_pred C
Confidence 3
|
Outlier of C2 family. |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=81.50 E-value=11 Score=36.31 Aligned_cols=54 Identities=26% Similarity=0.345 Sum_probs=38.0
Q ss_pred eeecccCC-CCCeecceeEEEee--C-C-CcEEEEEEEeCCCCCccccCCCCCCC----ceeEEEEEEcccc
Q 046822 637 RTRTVVDS-LSPKWNEQYTWEVF--D-P-CTVITVGVFDNCSLDKNIINNSGGRD----SRIGKVRIRLSTL 699 (971)
Q Consensus 637 rT~~~~~~-~nP~Wne~~~~~v~--~-~-~~~l~i~V~D~~~~~~~~~~~~~~~d----~~iG~~~i~l~~l 699 (971)
.|..+.-+ .++.|||.+.|++. + | .+.|.|+||+.+... .. ..||.+.++|-+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~---------~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK---------KSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST---------TT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC---------ccccceeEEEEEEEEeECC
Confidence 56655555 79999998888875 3 3 348999999876432 22 6899999998775
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=81.12 E-value=8.6 Score=34.47 Aligned_cols=70 Identities=23% Similarity=0.306 Sum_probs=45.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCCceEEEEEE--CCeEE----EeeecCCCCCCCCCCCcccceeEEEee---cCCCCeE
Q 046822 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQV--GNQFL----KTRIAAPSATRSLSNPCWNEDLLFVVA---EPFEDYL 500 (971)
Q Consensus 430 L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~--g~~~~----rT~~~~~~~~~~~~nP~w~e~f~f~~~---~~~~~~L 500 (971)
+.+.+..+++....... ..++.||++.+ |++.. .|+.+ .-...+.|||-+.|.+. -|.+..|
T Consensus 13 ~~~~~~~~~~~~l~~~~----~~~~l~v~~~l~~g~~~l~~pv~t~~~-----~~~~~~~Wnewl~f~i~i~~LPr~a~L 83 (100)
T smart00142 13 LVITIALIHGIPLNWSR----DYSDLYVEIQLYHGGKLLCLPVSTSYK-----PFFPSVKWNEWLTFPIQISDLPREARL 83 (100)
T ss_pred eEEEEEEeeCCCccccc----CcceEEEEEEEEECCEEccCcEEeccc-----CCCCCcccceeEEccCchhcCChhhEE
Confidence 45566666666544433 34588988865 66543 34433 33446899999888763 3456789
Q ss_pred EEEEEeCc
Q 046822 501 LISVEDHV 508 (971)
Q Consensus 501 ~v~V~d~d 508 (971)
.+.+|+..
T Consensus 84 ~~~i~~~~ 91 (100)
T smart00142 84 CITIYEVK 91 (100)
T ss_pred EEEEEEee
Confidence 99999864
|
Outlier of C2 family. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 971 | ||||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 2e-09 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 6e-06 | ||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 3e-08 | ||
| 3m7f_B | 176 | Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX | 1e-07 | ||
| 1rh8_A | 142 | Three-Dimensional Structure Of The Calcium-Free Pic | 4e-07 | ||
| 3hn8_A | 296 | Crystal Structure Of Synaptotagmin Length = 296 | 6e-07 | ||
| 1dqv_A | 296 | Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt | 7e-07 | ||
| 2nsq_A | 155 | Crystal Structure Of The C2 Domain Of The Human E3 | 2e-06 | ||
| 3b7y_A | 153 | Crystal Structure Of The C2 Domain Of The E3 Ubiqui | 5e-06 | ||
| 2d8k_A | 141 | Solution Structure Of The First C2 Domain Of Synapt | 4e-05 | ||
| 3f04_A | 143 | Crystal Structure Of Synaptotagmin I C2a Domain Len | 1e-04 | ||
| 1rsy_A | 152 | Structure Of The First C2-domain Of Synaptotagmin I | 1e-04 | ||
| 3f00_A | 143 | Crystal Structure Of Synaptotagmin I C2a Domain Wit | 1e-04 | ||
| 2r83_A | 284 | Crystal Structure Analysis Of Human Synaptotagmin 1 | 1e-04 | ||
| 1byn_A | 128 | Solution Structure Of The Calcium-Bound First C2-Do | 2e-04 | ||
| 2uzp_A | 144 | Crystal Structure Of The C2 Domain Of Human Protein | 4e-04 |
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
| >pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176 | Back alignment and structure |
|
| >pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142 | Back alignment and structure |
|
| >pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296 | Back alignment and structure |
|
| >pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296 | Back alignment and structure |
|
| >pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155 | Back alignment and structure |
|
| >pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153 | Back alignment and structure |
|
| >pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141 | Back alignment and structure |
|
| >pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143 | Back alignment and structure |
|
| >pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152 | Back alignment and structure |
|
| >pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143 | Back alignment and structure |
|
| >pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284 | Back alignment and structure |
|
| >pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128 | Back alignment and structure |
|
| >pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 9e-34
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 18/138 (13%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
K+ + V+ A L KD GSS P+V V+ K RT+ Y +LNP+W E F+ +
Sbjct: 18 KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHN--- 74
Query: 67 LPYKHIEVNVFNE----------RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116
I+V V +E R S +FLG+ L Y L+KR
Sbjct: 75 -SSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL----SGEMDVWYNLDKR 129
Query: 117 SLFSHIRGEISLKLFVST 134
+ S + G I L + V
Sbjct: 130 TDKSAVSGAIRLHISVEI 147
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 2e-20
Identities = 33/150 (22%), Positives = 55/150 (36%), Gaps = 9/150 (6%)
Query: 585 VKPTAKQLWKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDS 644
VK + + + ++ A GL K GS D Y + G+ RT+T+ +
Sbjct: 4 VKQSVLDGTSKWSAKISITVVCAQGLQAK----DKTGSSDPYVTVQVGKTKKRTKTIYGN 59
Query: 645 LSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSG--GRDSRIGKVRIRLSTLESD 702
L+P W E + +E + I V V D K+ + D +G+ I + TL +
Sbjct: 60 LNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE 119
Query: 703 RVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732
Y L G + L +
Sbjct: 120 --MDVWYNLDKRTDKSAVS-GAIRLHISVE 146
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 7e-14
Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 38/168 (22%)
Query: 416 SLKSKVYLSPKLW--YLRVSVIEAQDIVPGDK-GSAMMRFPELHAKAQVGNQFLKTRIAA 472
++K V W + ++V+ AQ + DK GS+ + + QVG +T+
Sbjct: 3 AVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSS-----DPYVTVQVGKTKKRTKTI- 56
Query: 473 PSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDH-----------VGPGKDEIVGKVLI 521
+L NP W E+ F D + + V D D+ +G+ +I
Sbjct: 57 ---YGNL-NPVWEENFHFECHNS-SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTII 111
Query: 522 PVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLD 569
V + D W+NL+ +S V I L +S++
Sbjct: 112 EVRTLSGEMD------VWYNLDK---RTDKSAV----SGAIRLHISVE 146
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 1e-13
Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 26/147 (17%)
Query: 260 KTSSTYDLVEQMQYLYVRVVKARDIS---LFGGGEIVAEVKLGNYRGITKRVSSNHL--Q 314
K S + + + VV A+ + G + V++G + TK + N L
Sbjct: 5 KQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGN-LNPV 63
Query: 315 WDQVFAFS-KDCIQSSAAEIFVKESD------------KDDFLGRIWFDLNEVPRRVPPD 361
W++ F F + + ++ D DDFLG+ ++ + +
Sbjct: 64 WEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM--- 120
Query: 362 SQLAPQWYRMEDRRGDRSKGGEVMVSI 388
WY ++ R + G + + I
Sbjct: 121 ----DVWYNLDKRTDKSAVSGAIRLHI 143
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-30
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
L V+V+ A +L+ D G S PF +E L+T YK+LNP WN+ F + DI +
Sbjct: 14 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 73
Query: 67 LPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEI 126
+EV VF+E +FLGKV P + + Y L+ + L +G I
Sbjct: 74 ----VLEVTVFDEDGDK-PPDFLGKVAIPLLSIRDGQ----PNCYVLKNKDLEQAFKGVI 124
Query: 127 SLKLFV 132
L++ +
Sbjct: 125 YLEMDL 130
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 2e-20
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 261 TSSTYDLVEQMQYLYVRVVKARDIS---LFGGGEIVAEVKLGNYRGITKRVSSNHL--QW 315
+S + V+ + L V+V+KA D+ G + ++LGN R T V N L +W
Sbjct: 2 SSGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKN-LNPEW 60
Query: 316 DQVFAFSKDCIQSSAAEIFVKESD---KDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRME 372
++VF F I E+ V + D DFLG++ L + P Y ++
Sbjct: 61 NKVFTFPIKDIHDV-LEVTVFDEDGDKPPDFLGKVAIPLLSIRDG-------QPNCYVLK 112
Query: 373 DRRGDRSKGGEVMVSI 388
++ +++ G + + +
Sbjct: 113 NKDLEQAFKGVIYLEM 128
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 3e-19
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 16/135 (11%)
Query: 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWE 656
+G+L++ +L A L+ F G D +C+ + G ++T TV +L+P+WN+ +T+
Sbjct: 12 VGILQVKVLKAADLLAADF----SGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFP 67
Query: 657 VFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHP 716
+ D V+ V VFD + +GKV I L ++ + + Y L
Sbjct: 68 IKDIHDVLEVTVFD---------EDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDL 116
Query: 717 SGVKKMGELHLAVRF 731
K G ++L +
Sbjct: 117 EQAFK-GVIYLEMDL 130
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 2e-12
Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 31/144 (21%)
Query: 429 YLRVSVIEAQDIVPGDK-GSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNED 487
L+V V++A D++ D G + + ++GN L+T ++L NP WN+
Sbjct: 14 ILQVKVLKAADLLAADFSGKS-----DPFCLLELGNDRLQTHTV----YKNL-NPEWNKV 63
Query: 488 LLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLEN--- 544
F + + D L ++V D G + +GKV IP+ ++ + L+N
Sbjct: 64 FTFPIKDI-HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQP------NCYVLKNKDL 116
Query: 545 HFGNQGESKVVTRFGSRIHLRVSL 568
+G I+L + L
Sbjct: 117 EQAFKGV----------IYLEMDL 130
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-25
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 16/142 (11%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVE------FEKQILRTQVKYKDLNPIWNEKLVFD 60
+ V+VIA L KD G+S P+V V ++T+ K LNP WNE+++F
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 61 VPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLC----KNEGEATAQLYTLEKR 116
V I VF+E R + +FLG+V P L + E T + + L R
Sbjct: 69 VLP----QRHRILFEVFDENRLT-RDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPR 123
Query: 117 SLFSHIRGEISLKL-FVSTTEE 137
S S ++G + LK+ ++
Sbjct: 124 SHKSRVKGYLRLKMTYLPKNGS 145
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 2e-15
Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 24/152 (15%)
Query: 591 QLWKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKW------VRTRTVVDS 644
+L V+ + ++ GL G+ D Y V+T+T+ S
Sbjct: 1 ELHNDDTRVVRVKVIAGIGLAKKDI----LGASDPYVRVTLYDPMSGILTSVQTKTIKKS 56
Query: 645 LSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRV 704
L+PKWNE+ + V I VFD N RD +G+V + L L ++
Sbjct: 57 LNPKWNEEILFRVLPQRHRILFEVFD---------ENRLTRDDFLGQVDVPLYPLPTENP 107
Query: 705 ---YTHSYPLLMLHPSGVKK--MGELHLAVRF 731
+++ +LHP K G L L + +
Sbjct: 108 RMERPYTFKDFVLHPRSHKSRVKGYLRLKMTY 139
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 5e-09
Identities = 20/145 (13%), Positives = 51/145 (35%), Gaps = 15/145 (10%)
Query: 265 YDLVEQMQYLYVRVVKARDIS---LFGGGEIVAEVKLGNYRGITK-----RVSSNHL--Q 314
++ + + + V+V+ ++ + G + V L + + L +
Sbjct: 3 HN--DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPK 60
Query: 315 WDQVFAFS-KDCIQSSAAEIFVKES-DKDDFLGRIWFDLNEVPRRVPPDSQL-APQWYRM 371
W++ F E+F + +DDFLG++ L +P P + + + +
Sbjct: 61 WNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVL 120
Query: 372 EDRRGDRSKGGEVMVSIWFGTQADE 396
R G + + + + +
Sbjct: 121 HPRSHKSRVKGYLRLKMTYLPKNGS 145
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 1e-07
Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 19/172 (11%)
Query: 429 YLRVSVIEAQDIVPGDK-GSAMMRFPELHAKAQVGNQFLKTRIAAPSAT--RSLSNPCWN 485
+RV VI + D G++ + + + + + + + T +SL NP WN
Sbjct: 9 VVRVKVIAGIGLAKKDILGAS-----DPYVRVTLYDPMSGILTSVQTKTIKKSL-NPKWN 62
Query: 486 EDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAV--ERRTDDKQVVSRWFNLE 543
E++LF V P +L V D +D+ +G+V +P+ + E ++ + F L
Sbjct: 63 EEILFRV-LPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLH 121
Query: 544 NHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEATLYSSDVKPTAKQLWKP 595
+S+V G + L+++ DE + +++P L +P
Sbjct: 122 ---PRSHKSRV---KGY-LRLKMTYLPKNGSEDENADQAEELEPGWVVLDQP 166
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 3e-25
Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 10/134 (7%)
Query: 2 GDGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF--EKQILRTQVKYKDLNPIWNEKLVF 59
G K+ + V+ A NL KD PF ++ Q T L+P WN+
Sbjct: 1 GSEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDL 60
Query: 60 DVPDIAELPYKHIEVNVFNERRSS--NSRNFLGKVRAPCSQLCKNEGEATAQL-YTLEKR 116
V I ++V+N ++ FLG VR + + + + +L
Sbjct: 61 YVG-----KTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNP 115
Query: 117 SLFSHIRGEISLKL 130
S +RG+I + L
Sbjct: 116 SDTDAVRGQIVVSL 129
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 4e-12
Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 15/136 (11%)
Query: 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKY--GQKWVRTRTVVDSLSPKWNEQYTWEV 657
+ + +L A L F D + + T TV ++L PKWN+ Y V
Sbjct: 7 IRLTVLCAKNLAKKDF----FRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV 62
Query: 658 FDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTL--ESDRVYTHSYPLLMLH 715
IT+ V+++ + K +G VR+ + + D Y +
Sbjct: 63 -GKTDSITISVWNHKKIHKKQGAG------FLGCVRLLSNAISRLKDTGYQRLDLCKLNP 115
Query: 716 PSGVKKMGELHLAVRF 731
G++ ++++
Sbjct: 116 SDTDAVRGQIVVSLQT 131
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 8e-08
Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 24/144 (16%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQV--GNQFLKTRIAAPSATRSLSNPCWNED 487
+R++V+ A+++ D R P+ AK V Q T +L +P WN+
Sbjct: 7 IRLTVLCAKNLAKKD----FFRLPDPFAKIVVDGSGQCHSTDTV----KNTL-DPKWNQH 57
Query: 488 LLFVVAEPFEDYLLISVEDHVGPGKDE---IVGKVLIPVSAVERRTDDKQVVSRWFNLEN 544
V D + ISV +H K + +G V + +A+ R D + L+
Sbjct: 58 YDLYV--GKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTG-----YQRLDL 110
Query: 545 HFGNQGESKVVTRFGSRIHLRVSL 568
N ++ V G I + +
Sbjct: 111 CKLNPSDTDAVR--GQ-IVVSLQT 131
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 2e-23
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVE------FEKQILRTQVKYKDLNPIWNEKLVFD 60
+ V VIA L KD G+S P+V V ++T+ K LNP WNE+++F
Sbjct: 21 IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 61 VPDIAELPYKHIEVNVFNERRSSNSRN-FLGKVRAPCSQLCKNEGEA----TAQLYTLEK 115
V + VF+E R +R+ FLG+V P L T + + L
Sbjct: 81 VHP----QQHRLLFEVFDENR--LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHP 134
Query: 116 RSLFSHIRGEISLKL 130
RS S ++G + LK+
Sbjct: 135 RSHKSRVKGYLRLKM 149
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 7e-15
Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 16/153 (10%)
Query: 252 GGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDIS---LFGGGEIVAEVKLGNYRGITK-- 306
G + D E + + VRV+ ++ + G + V L +
Sbjct: 1 GMATCAVEVFGLLED-EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTS 59
Query: 307 ---RVSSNHL--QWDQVFAFSKDCIQSSAAEIFVKESD---KDDFLGRIWFDLNEVPRRV 358
+ L +W++ F Q V + + +DDFLG++ L +P
Sbjct: 60 VQTKTIKKSLNPKWNEEILFRVH-PQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTEN 118
Query: 359 PPDSQ-LAPQWYRMEDRRGDRSKGGEVMVSIWF 390
P + + + + R G + + + +
Sbjct: 119 PRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTY 151
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-13
Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 24/147 (16%)
Query: 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKW------VRTRTVVDSLSPKW 649
+ ++ + ++ GL G+ D Y V+T+T+ SL+PKW
Sbjct: 18 NSRIVRVRVIAGIGLAKKDI----LGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKW 73
Query: 650 NEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRV---YT 706
NE+ + V + VFD N RD +G+V + L L ++
Sbjct: 74 NEEILFRVHPQQHRLLFEVFD---------ENRLTRDDFLGQVDVPLYPLPTENPRLERP 124
Query: 707 HSYPLLMLHP--SGVKKMGELHLAVRF 731
+++ +LHP + G L L + +
Sbjct: 125 YTFKDFVLHPRSHKSRVKGYLRLKMTY 151
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 4e-09
Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 21/155 (13%)
Query: 419 SKVYLSPKLWYLRVSVIEAQDIVPGDK-GSAMMRFPELHAKAQVGNQFLKTRIAAPSAT- 476
+ +RV VI + D G++ + + + + + + + T
Sbjct: 11 GLLEDEENSRIVRVRVIAGIGLAKKDILGAS-----DPYVRVTLYDPMNGVLTSVQTKTI 65
Query: 477 -RSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAV--ERRTDDK 533
+SL NP WNE++LF V P + LL V D +D+ +G+V +P+ + E ++
Sbjct: 66 KKSL-NPKWNEEILFRV-HPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLER 123
Query: 534 QVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSL 568
+ F L +S+V + +LR+ +
Sbjct: 124 PYTFKDFVLH---PRSHKSRV------KGYLRLKM 149
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 3e-23
Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 7/134 (5%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
L V V +A N+ PK G P V V F+ + +T+ +LNP+WNE L FD+ I
Sbjct: 8 MLRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPL 66
Query: 67 LPYKHIEVNVFNE-RRSSNSRNFLGKVRAPCSQLCKNEG-EATAQLYTLEKRSLFSHIRG 124
+ + V + N +G L ++ +L +L
Sbjct: 67 DFSSSLGIIVKDFETIGQN--KLIGTATVALKDLTGDQSRSLPYKLISLLNEKG-QDTGA 123
Query: 125 EISLKL-FVSTTEE 137
I L + + +
Sbjct: 124 TIDLVIGYDPPSGP 137
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 8e-18
Identities = 28/140 (20%), Positives = 57/140 (40%), Gaps = 19/140 (13%)
Query: 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWE 656
G+L + + A+ + KF G D + + +T+ V + L+P WNE ++
Sbjct: 6 SGMLRVIVESASNIPKTKF-----GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFD 60
Query: 657 VF----DPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712
+ D + + + V D + G++ IG + L L D+ + Y L+
Sbjct: 61 LRGIPLDFSSSLGIIVKD---------FETIGQNKLIGTATVALKDLTGDQSRSLPYKLI 111
Query: 713 -MLHPSGVKKMGELHLAVRF 731
+L+ G + L + +
Sbjct: 112 SLLNEKGQDTGATIDLVIGY 131
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 1e-12
Identities = 32/141 (22%), Positives = 54/141 (38%), Gaps = 22/141 (15%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLL 489
LRV V A +I G P+ ++ KT+ L NP WNE L
Sbjct: 9 LRVIVESASNIPKTKFGK-----PDPIVSVIFKDEKKKTKKV----DNEL-NPVWNEILE 58
Query: 490 FVVAEPFEDY---LLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHF 546
F + D+ L I V+D G+++++G + + + Q S + L +
Sbjct: 59 FDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGD----QSRSLPYKLISLL 114
Query: 547 GNQGESKVVTRFGSRIHLRVS 567
+G+ G+ I L +
Sbjct: 115 NEKGQDT-----GATIDLVIG 130
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 2e-12
Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 14/127 (11%)
Query: 274 LYVRVVKARDIS--LFGGGEIVAEVKLGNYRGITKRVSSNHL--QWDQVFAFSKDCIQ-- 327
L V V A +I FG + + V + + TK+V + L W+++ F I
Sbjct: 9 LRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNE-LNPVWNEILEFDLRGIPLD 67
Query: 328 -SSAAEIFVKESD---KDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGE 383
SS+ I VK+ + ++ +G L ++ + + + +G + G
Sbjct: 68 FSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPY--KLISLLNEKG-QDTGAT 124
Query: 384 VMVSIWF 390
+ + I +
Sbjct: 125 IDLVIGY 131
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 92.7 bits (230), Expect = 2e-22
Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 4/110 (3%)
Query: 271 MQYLYVRVVKARDISLFGGGEIVAEVKLGNYRGITKRVSSNHLQWDQVFAFSKDCIQSS- 329
M L V V KA+ +K+ N + T V + W+Q F F + +
Sbjct: 4 MSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGL 63
Query: 330 AAEIFVKESDKDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRS 379
E++ K D +G +W L + + + + +W ++ +
Sbjct: 64 TVEVWNKGLIWDTMVGTVWIPLRTIRQS---NEEGPGEWLTLDSQAIMAD 110
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 4e-10
Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 17/115 (14%)
Query: 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDL 488
L V V +A+ +K + + +V N T S P W +D
Sbjct: 6 LLCVGVKKAKFDGAQEKFNT-------YVTLKVQNVKSTTI------AVRGSQPSWEQDF 52
Query: 489 LFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLE 543
+F + + L + V + G D +VG V IP+ + + +++ W L+
Sbjct: 53 MFEINRL-DLGLTVEVWNK-GLIWDTMVGTVWIPLRTIRQS--NEEGPGEWLTLD 103
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 6e-10
Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 12/119 (10%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAEL 67
L V V A ++ + +V ++ + T + P W + +F++ +
Sbjct: 7 LCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIA-VRGSQPSWEQDFMFEINRLDL- 61
Query: 68 PYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEI 126
+ V V+N+ + +G V P + ++ E + TL+ +++ + EI
Sbjct: 62 ---GLTVEVWNKGLIWD--TMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMA--DSEI 113
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 3e-21
Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 11/133 (8%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQ-VKYKDLNPIWNEKLVFDVPDIA 65
L V +++A L D + P+V++ Q ++ + P WNE +F V +
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-- 68
Query: 66 ELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGE 125
++ +F++ + +G+ P + EG Y + K +GE
Sbjct: 69 --GTTELKAKIFDKDVGTEDD-AVGEATIPLEPV-FVEGSIPPTAYNVVKD---EEYKGE 121
Query: 126 ISLKL-FVSTTEE 137
I + L F +
Sbjct: 122 IWVALSFKPSGPS 134
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 5e-18
Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 17/136 (12%)
Query: 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVD-SLSPKWNEQYTW 655
G LE+ ++ A GL F ++D Y + ++ +P+WNE + +
Sbjct: 9 HGTLEVVLVSAKGLEDADF----LNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIF 64
Query: 656 EVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLH 715
V + T + +FD + G D +G+ I L + + + ++
Sbjct: 65 TVSEGTTELKAKIFD---------KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD 115
Query: 716 PSGVKKMGELHLAVRF 731
+ GE+ +A+ F
Sbjct: 116 E---EYKGEIWVALSF 128
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 3e-11
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLL 489
L V ++ A+ + D + M + + Q K+ +A + P WNE +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPY----VQLTCRTQDQKSNVA----EGMGTTPEWNETFI 63
Query: 490 FVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHFGNQ 549
F V+E L + D +D+ VG+ IP+ V + + +N+ +
Sbjct: 64 FTVSEG-TTELKAKIFDKDVGTEDDAVGEATIPLEPVF---VEGSIPPTAYNVVKDEEYK 119
Query: 550 GESKVVTRFGSRIHLRVS 567
GE I + +S
Sbjct: 120 GE----------IWVALS 127
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-08
Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 20/127 (15%)
Query: 274 LYVRVVKARDIS---LFGGGEIVAEVKLGNYRGITKRVSSNHL--QWDQVFAFSKDCIQS 328
L V +V A+ + + ++ + +W++ F F+ +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFT---VSE 68
Query: 329 SAAEIFVKESD-----KDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGE 383
E+ K D +DD +G L V + + P Y + + GE
Sbjct: 69 GTTELKAKIFDKDVGTEDDAVGEATIPLEP----VFVEGSIPPTAYNVVKDEEYK---GE 121
Query: 384 VMVSIWF 390
+ V++ F
Sbjct: 122 IWVALSF 128
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 89.3 bits (221), Expect = 9e-21
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 6/113 (5%)
Query: 269 EQMQYLYVRVVKARDISLFGGGEIVAEVKLGNYRGITKRVSSNHLQWDQVFAFSKDCIQS 328
+ L V V KA+ +K+ N T V + W+Q F F + +
Sbjct: 11 GILSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVESTTIAVRGSQPSWEQDFMFEINRLDL 70
Query: 329 SAAEIFVKESD--KDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRS 379
+ V D +G +W L + + + + +W ++ +
Sbjct: 71 G-LTVEVWNKGLIWDTMVGTVWIPLRTIRQS---NEEGPGEWLTLDSQAIMAD 119
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 8e-09
Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 17/115 (14%)
Query: 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDL 488
L V V +A+ +K + + +V N T S P W +D
Sbjct: 15 LLCVGVKKAKFDGAQEKFNT-------YVTLKVQNVESTTI------AVRGSQPSWEQDF 61
Query: 489 LFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLE 543
+F + + L + V + G D +VG V IP+ + + +++ W L+
Sbjct: 62 MFEINRL-DLGLTVEVWN-KGLIWDTMVGTVWIPLRTIRQS--NEEGPGEWLTLD 112
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 3e-08
Identities = 18/111 (16%), Positives = 45/111 (40%), Gaps = 10/111 (9%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAEL 67
L V V A ++ + +V ++ + T + + P W + +F++ +
Sbjct: 16 LCVGVKKAKFDGAQE---KFNTYVTLKVQNVESTT-IAVRGSQPSWEQDFMFEINRLDL- 70
Query: 68 PYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSL 118
+ V V+N+ + +G V P + ++ E + TL+ +++
Sbjct: 71 ---GLTVEVWNKGLIWD--TMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAI 116
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 2e-20
Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 9/127 (7%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
+L + VI+A K SP+VEV + Q +T+ +P W + L V
Sbjct: 37 QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT---- 92
Query: 67 LPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQL-YTLEKRSLFSH--IR 123
P + V++ + + LG + K+ ++ TL+
Sbjct: 93 -PVSKLHFRVWSHQTLKSDV-LLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETI 150
Query: 124 GEISLKL 130
G++S+ L
Sbjct: 151 GDLSICL 157
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 8e-14
Identities = 19/137 (13%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYT 654
L++ ++ A K Y + +T ++ SPKW + T
Sbjct: 33 TMKSQLQITVISAKLKENKKN----WFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLT 88
Query: 655 WEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLML 714
V P + + V+ + + D +G + + ++ L
Sbjct: 89 VIV-TPVSKLHFRVWS---------HQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTL 138
Query: 715 HPSG----VKKMGELHL 727
G + +G+L +
Sbjct: 139 QLGGDKEPTETIGDLSI 155
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 7e-11
Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 22/167 (13%)
Query: 407 ANVHFDGLCSLKSKVYLSPKL---WYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGN 463
N++F G+ S++ L L+++VI A+ P + + V
Sbjct: 12 ENLYFQGMSDSGSQLGSMGSLTMKSQLQITVISAKLKENKKN----WFGPSPYVEVTVDG 67
Query: 464 QFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPV 523
Q KT + ++P W + L +V L V H D ++G + +
Sbjct: 68 QSKKTEKC-----NNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLLGTAALDI 120
Query: 524 SAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDG 570
++++ ++ L+ + + L + LDG
Sbjct: 121 YETL-KSNNMKLEEVVVTLQLGGDKEPTE-------TIGDLSICLDG 159
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 4e-07
Identities = 19/137 (13%), Positives = 41/137 (29%), Gaps = 13/137 (9%)
Query: 261 TSSTYDLVEQMQYLYVRVVKARDIS---LFGGGEIVAEVKLGNYRGITKRV-SSNHLQWD 316
+ + L + V+ A+ + G EV + T++ ++N +W
Sbjct: 25 QLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWK 84
Query: 317 QVFAFSKDCIQSSAAEIFVKESD---KDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMED 373
Q S V D LG D+ E + + +L ++
Sbjct: 85 QPLTVIVT--PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLK--SNNMKLEEVVVTLQL 140
Query: 374 RRGDRS--KGGEVMVSI 388
G++ + +
Sbjct: 141 GGDKEPTETIGDLSICL 157
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 6e-20
Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVF 59
+L+V ++ A +L ++ +P+V++ F +K RT+ K L P WN+ ++
Sbjct: 17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 76
Query: 60 DVPDIAELPYKHIEVNVFNERRSSNSRN-FLGKVRAPCSQLCKNEGEATAQLYTLE 114
E + +E+ ++++ R + FLG++ L + Y L+
Sbjct: 77 SPVHRREFRERMLEITLWDQARVREEESEFLGEILIE---LETALLDDEPHWYKLQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 21/123 (17%)
Query: 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVA-----KYGQKWVRTRTVVDSLSPKWNEQ 652
L + ILGA L + G + Y + + RT+TV +L PKWN+
Sbjct: 18 HQLIVTILGAKDLPSRED----GRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 73
Query: 653 YTWEVFDPCT----VITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHS 708
+ + ++ + ++D + +G++ I L T D H
Sbjct: 74 FIYSPVHRREFRERMLEITLWDQARV-------REEESEFLGEILIELETALLDDE-PHW 125
Query: 709 YPL 711
Y L
Sbjct: 126 YKL 128
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 4e-06
Identities = 26/135 (19%), Positives = 53/135 (39%), Gaps = 32/135 (23%)
Query: 426 KLWY------LRVSVIEAQDIVPGDKGSA------MMRFPELHAKAQVGNQFLKTRIAAP 473
KLW+ L V+++ A+D+ + G + P+ K + +T+
Sbjct: 10 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNK-----RRTKTVK- 63
Query: 474 SATRSLSNPCWNEDLLFVVAEPFED---YLLISV--EDHVGPGKDEIVGKVLIPVSAVER 528
++L P WN+ ++ E L I++ + V + E +G++LI +
Sbjct: 64 ---KTL-EPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE---- 115
Query: 529 RTDDKQVVSRWFNLE 543
T W+ L+
Sbjct: 116 -TALLDDEPHWYKLQ 129
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 2e-19
Identities = 20/107 (18%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEV-----EFEKQILRTQVKYKDLNPIWNEKLVF 59
+L+V ++ A +L ++ +P+V++ +K RT+ K L P WN+ ++
Sbjct: 20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 79
Query: 60 DVPDIAELPYKHIEVNVFNERRSSNSRN-FLGKVRAPCSQLCKNEGE 105
E + +E+ ++++ R + FLG++ ++
Sbjct: 80 SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEP 126
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 21/124 (16%)
Query: 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVA-----KYGQKWVRTRTVVDSLSPKWNEQ 652
L + ILGA L + G + Y + + RT+TV +L PKWN+
Sbjct: 21 HQLIVTILGAKDLPSRE----DGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 76
Query: 653 YTWEVFDPCTVIT----VGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHS 708
+ + + ++D + +G++ I L T D H
Sbjct: 77 FIYSPVHRREFRERMLEITLWDQARV-------REEESEFLGEILIELETALLDDE-PHW 128
Query: 709 YPLL 712
Y L
Sbjct: 129 YKLQ 132
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 4e-06
Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 32/137 (23%)
Query: 426 KLWY------LRVSVIEAQDIVPGDKGSA------MMRFPELHAKAQVGNQFLKTRIAAP 473
KLW+ L V+++ A+D+ + G + P+ K + +T+
Sbjct: 13 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNK-----RRTKTV-- 65
Query: 474 SATRSLSNPCWNEDLLFVVAEPFED---YLLISV--EDHVGPGKDEIVGKVLIPVSAVER 528
+ P WN+ ++ E L I++ + V + E +G++LI +
Sbjct: 66 ---KKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA-- 120
Query: 529 RTDDKQVVSRWFNLENH 545
W+ L+ H
Sbjct: 121 ---LLDDEPHWYKLQTH 134
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 1e-18
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 21/126 (16%)
Query: 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEV-------EFEKQILRTQVKYKDLNPIWNEKLV 58
++V +I A NL D G+S P+V+V EK+ +T K ++LNPI+NE
Sbjct: 16 NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKK--KTVTKKRNLNPIFNESFA 73
Query: 59 FDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCS----------QLCKNEGEATA 108
FD+P +L I + V ++ + S + +GK+ + + A
Sbjct: 74 FDIPT-EKLRETTIIITVMDKDKLS-RNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVA 131
Query: 109 QLYTLE 114
Q + L+
Sbjct: 132 QWHQLK 137
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 24/133 (18%), Positives = 54/133 (40%), Gaps = 32/133 (24%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPE-------LHAKAQVGNQFLKTRIAAPSATRSLSNP 482
+ V++I+A+++ D G + ++ +V + KT + NP
Sbjct: 18 IIVNIIKARNLKAMDIG----GTSDPYVKVWLMYKDKRVEKK--KTVTK-----KRNLNP 66
Query: 483 CWNEDLLFVVAEPFEDY----LLISVEDHVGPGKDEIVGKVLIPVSAVERRTD------- 531
+NE F + P E ++I+V D +++++GK+ + +
Sbjct: 67 IFNESFAFDI--PTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIA 124
Query: 532 -DKQVVSRWFNLE 543
+Q V++W L+
Sbjct: 125 RPRQPVAQWHQLK 137
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 3e-18
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFDV 61
+L+V +I A L D G+S P+V+V +K+ T+V K LNP++NE+ F V
Sbjct: 41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 100
Query: 62 PDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEG 104
P +EL K + + V++ R S + +G+ + P + +
Sbjct: 101 PY-SELGGKTLVMAVYDFDRFS-KHDIIGEFKVPMNTVDFGHV 141
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 5e-07
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 34/135 (25%)
Query: 426 KLWY------LRVSVIEAQDIVPGDKGSA------MMRFPELHAKAQVGNQFLKTRIAAP 473
L Y L V +I+A ++ D G + P+ K +T++
Sbjct: 34 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKK-------FETKVH-- 84
Query: 474 SATRSLSNPCWNEDLLFVVAEPFEDY----LLISVEDHVGPGKDEIVGKVLIPVSAVERR 529
R NP +NE F V P+ + L+++V D K +I+G+ +P++ V
Sbjct: 85 ---RKTLNPVFNEQFTFKV--PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV--- 136
Query: 530 TDDKQVVSRWFNLEN 544
D V W +L++
Sbjct: 137 -DFGHVTEEWRDLQS 150
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 9e-07
Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 19/124 (15%)
Query: 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAK---YGQKWVRTRTVVDSLSPKWNE 651
L +GI+ A L + GG+ D Y +K T+ +L+P +NE
Sbjct: 39 FQNNQLLVGIIQAAELPAL----DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 94
Query: 652 QYTWEVFD---PCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHS 708
Q+T++V + + V+D + + IG+ ++ ++T++ V
Sbjct: 95 QFTFKVPYSELGGKTLVMAVYDF---------DRFSKHDIIGEFKVPMNTVDFGHVTEEW 145
Query: 709 YPLL 712
L
Sbjct: 146 RDLQ 149
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 4e-18
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFDV 61
+ L V+++ A L KD G+S PFV++ +K L T+VK K+LNP WNE +F+
Sbjct: 25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEG 84
Query: 62 PDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFS 120
++ + + + V + R S + +G+V P +++ + L+ S
Sbjct: 85 FPYEKVVQRILYLQVLDYDRFS-RNDPIGEVSIPLNKVDLTQM--QTFWKDLKPSGPSS 140
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 3e-07
Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 20/124 (16%)
Query: 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY---GQKWVRTRTVVDSLSPKWNE 651
L + I+ A L G+ D + + + T+ +L+P WNE
Sbjct: 23 FQESTLTVKIMKAQELPAK----DFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNE 78
Query: 652 QYTWEVFDPCTVIT----VGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTH 707
+ +E F V+ + V D + R+ IG+V I L+ ++ ++ T
Sbjct: 79 TFLFEGFPYEKVVQRILYLQVLDY---------DRFSRNDPIGEVSIPLNKVDLTQMQTF 129
Query: 708 SYPL 711
L
Sbjct: 130 WKDL 133
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 5e-07
Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 31/133 (23%)
Query: 426 KLWY------LRVSVIEAQDIVPGDKGSA------MMRFPELHAKAQVGNQFLKTRIAAP 473
+ Y L V +++AQ++ D + P+ L+T++
Sbjct: 18 SVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPD-------KKHKLETKVK-- 68
Query: 474 SATRSLSNPCWNEDLLF---VVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRT 530
R NP WNE LF + + L + V D+ +++ +G+V IP++ V
Sbjct: 69 ---RKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV---- 121
Query: 531 DDKQVVSRWFNLE 543
D Q+ + W +L+
Sbjct: 122 DLTQMQTFWKDLK 134
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 4e-18
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFDV 61
+L+V +I A L D G+S P+V+V +K+ T+V K LNP++NE+ F V
Sbjct: 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92
Query: 62 PDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEG 104
P +EL K + + V++ R S + +G+ + P + +
Sbjct: 93 PY-SELGGKTLVMAVYDFDRFS-KHDIIGEFKVPMNTVDFGHV 133
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 34/135 (25%)
Query: 426 KLWY------LRVSVIEAQDIVPGDKGSA------MMRFPELHAKAQVGNQFLKTRIAAP 473
L Y L V +I+A ++ D G + P+ K +T++
Sbjct: 26 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKK-------FETKVH-- 76
Query: 474 SATRSLSNPCWNEDLLFVVAEPFEDY----LLISVEDHVGPGKDEIVGKVLIPVSAVERR 529
R NP +NE F V P+ + L+++V D K +I+G+ +P++ V
Sbjct: 77 ---RKTLNPVFNEQFTFKV--PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV--- 128
Query: 530 TDDKQVVSRWFNLEN 544
D V W +L++
Sbjct: 129 -DFGHVTEEWRDLQS 142
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 6e-07
Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 19/124 (15%)
Query: 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAK---YGQKWVRTRTVVDSLSPKWNE 651
L +GI+ A L + GG+ D Y +K T+ +L+P +NE
Sbjct: 31 FQNNQLLVGIIQAAELPAL----DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 86
Query: 652 QYTWEVFD---PCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHS 708
Q+T++V + + V+D + + IG+ ++ ++T++ V
Sbjct: 87 QFTFKVPYSELGGKTLVMAVYDF---------DRFSKHDIIGEFKVPMNTVDFGHVTEEW 137
Query: 709 YPLL 712
L
Sbjct: 138 RDLQ 141
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 5e-18
Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 6 EKLVVEVIAAHNLM---PKDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVF 59
K V V+ A + D + P+VE+ RT+ D+NP+WNE F
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 60 DVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLF 119
+ E +E+ + + + LG S + GE + + +
Sbjct: 63 ILDPNQE---NVLEITLMDANYVMDE--TLGTATFTVSSMKV--GEKKEVPFIFNQVT-- 113
Query: 120 SHIRGEISLKLFVSTT 135
+ + L V+++
Sbjct: 114 ---EMVLEMSLEVASS 126
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 1e-13
Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 23/142 (16%)
Query: 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---QKWVRTRTVVDSLSPKWNEQYT 654
+ +L AT + F + D Y RTR + ++P WNE +
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTP-DPYVELFISTTPDSRKRTRHFNNDINPVWNETFE 61
Query: 655 WEVFDPCT-VITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713
+ + V+ + + D N D +G +S+++ +
Sbjct: 62 FILDPNQENVLEITLM-----DANY-----VMDETLGTATFTVSSMKVGEKKEVPFIF-- 109
Query: 714 LHPSGVKKMGELHLAVRFSCAN 735
++ E+ L + A+
Sbjct: 110 ------NQVTEMVLEMSLEVAS 125
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 1e-13
Identities = 18/114 (15%), Positives = 46/114 (40%), Gaps = 17/114 (14%)
Query: 272 QYLYVRVVKARDISLFGGGEIV------AEVKLG---NYRGITKRVSSN-HLQWDQVFAF 321
V V++A ++ G+++ E+ + + R T+ +++ + W++ F F
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 322 SKDCIQSSAAEIFVKESD--KDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMED 373
D Q + EI + +++ D+ LG F ++ + + +
Sbjct: 63 ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE-----VPFIFNQ 111
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-10
Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 14/119 (11%)
Query: 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVG---NQFLKTRIAAPSATRSLSNPCWN 485
V V+ A + G G M+ P+ + + + + +TR + NP WN
Sbjct: 4 KFTVVVLRATKVTKGAFGD-MLDTPDPYVELFISTTPDSRKRTRHF----NNDI-NPVWN 57
Query: 486 EDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLEN 544
E F++ E+ L I++ D DE +G VS+++ + F
Sbjct: 58 ETFEFILDPNQENVLEITLMDA-NYVMDETLGTATFTVSSMKVG----EKKEVPFIFNQ 111
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 8e-18
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEV--------------EFEKQILRTQVKYKDLN 50
L++ ++ A NL+P+D G S PFV+V + RT+ K LN
Sbjct: 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 51 PIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSRN-FLGKVRAPCSQLCKNEGEATAQ 109
P WN+ +++ + +L K +EV V++ R S N FLG+V S + T +
Sbjct: 77 PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRF--SSNDFLGEVLIDLSSTSHLDN--TPR 132
Query: 110 LYTLEKRS 117
Y L++++
Sbjct: 133 WYPLKEQT 140
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 9e-09
Identities = 26/138 (18%), Positives = 55/138 (39%), Gaps = 28/138 (20%)
Query: 426 KLWY----LRVSVIEAQDIVPGDKGSA----------MMRFPELHAKAQVGNQFLKTRIA 471
++ Y L + +++A+++VP D R + + +T+
Sbjct: 12 QINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYV 71
Query: 472 APSATRSLSNPCWNEDLLFVVAEPFED----YLLISVEDHVGPGKDEIVGKVLIPVSAVE 527
+SL NP WN+ +++ E L ++V D+ ++ +G+VLI +S+
Sbjct: 72 Q----KSL-NPEWNQTVIYKSI-SMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST- 124
Query: 528 RRTDDKQVVSRWFNLENH 545
RW+ L+
Sbjct: 125 ---SHLDNTPRWYPLKEQ 139
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 28/133 (21%), Positives = 45/133 (33%), Gaps = 31/133 (23%)
Query: 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCV--------------AKYGQKWVRTRTVVD 643
G L + IL A L+P G D + + RT+ V
Sbjct: 18 GNLIIHILQARNLVPRDN----NGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK 73
Query: 644 SLSPKWNEQYTWEVFDP----CTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTL 699
SL+P+WN+ ++ + V V+D + + +G+V I LS+
Sbjct: 74 SLNPEWNQTVIYKSISMEQLMKKTLEVTVWDY---------DRFSSNDFLGEVLIDLSST 124
Query: 700 ESDRVYTHSYPLL 712
YPL
Sbjct: 125 SHLDNTPRWYPLK 137
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 8e-18
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFDV 61
++LVV ++ A +L KD G S P+V++ K+ +T+V K LNPI+NE F V
Sbjct: 19 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSV 78
Query: 62 PDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSH 121
P AEL + + +V++ R S + +G+V + + +
Sbjct: 79 PL-AELAQRKLHFSVYDFDRFS-RHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKA 136
Query: 122 IRGEISLKL 130
GE++ L
Sbjct: 137 DLGELNFSL 145
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 8e-16
Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 19/137 (13%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVF 59
L V +I A NL D G S P+V+ + +T +K LNP +NE LVF
Sbjct: 151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 210
Query: 60 DVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCS-----------QLCKNEGEATA 108
DV + + + V + +G R ++ N +
Sbjct: 211 DVAP-ESVENVGLSIAVVDYDCIG-HNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVE 268
Query: 109 QLYTL-EKRSLFSHIRG 124
+ L E+++L S +G
Sbjct: 269 HWHQLVEEKTLSSFTKG 285
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 2e-12
Identities = 51/285 (17%), Positives = 97/285 (34%), Gaps = 69/285 (24%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQV---GNQFLKTRIAAPSATRSLSNPCWNE 486
L V +++A D+ D + K + + +T++ R NP +NE
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPY----VKIYLLPDRKKKFQTKV-----HRKTLNPIFNE 72
Query: 487 DLLFVV--AEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLEN 544
F V AE + L SV D + +++G+V++ + + W ++
Sbjct: 73 TFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDN--LLELAEQPPDRPLWRDILE 130
Query: 545 HFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEATLYSSDVKPTAKQLWKPHIGVLEMGI 604
+ + L SL + P G+L + I
Sbjct: 131 GGSEKAD---------LGELNFSL-----------------------CYLPTAGLLTVTI 158
Query: 605 LGATGLMPMKFKEGKGGSVDAYCVAKY---GQKWV--RTRTVVDSLSPKWNEQYTWEV-- 657
+ A+ L M G D Y A G++ +T ++L+P +NE ++V
Sbjct: 159 IKASNLKAMD----LTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAP 214
Query: 658 FDPCTV-ITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLES 701
V +++ V D + G + IG R+ +
Sbjct: 215 ESVENVGLSIAVVD---------YDCIGHNEVIGVCRVGPEAADP 250
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 57/306 (18%), Positives = 106/306 (34%), Gaps = 75/306 (24%)
Query: 265 YDLVEQMQYLYVRVVKARD-ISLFGGGEIVAEVKL-----GNYRGITKRV-SSNHLQWDQ 317
Y L VR+++A D + G VK+ + TK + + +++
Sbjct: 15 YL--YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 72
Query: 318 VFAF--SKDCIQSSAAEIFVKESD---KDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRME 372
F F + V + D + D +G++ D PPD P W +
Sbjct: 73 TFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDR---PLWRDIL 129
Query: 373 DRRGDRSKGGEVMVSIWFGTQADEAFAEAWHSKAANVHFDGLCSLKSKVYLSPKLWYLRV 432
+ +++ GE+ S+ + P L V
Sbjct: 130 EGGSEKADLGELNFSLCY---------------------------------LPTAGLLTV 156
Query: 433 SVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQ-----FLKTRIAAPSATRSLSNPCWNED 487
++I+A ++ D F + + KA + ++ KT I ++ NP +NE
Sbjct: 157 TIIKASNLKAMDLT----GFSDPYVKASLISEGRRLKKRKTSIK-----KNTLNPTYNEA 207
Query: 488 LLFVVA--EPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDD---------KQVV 536
L+F VA L I+V D+ G +E++G + A + + ++ V
Sbjct: 208 LVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPV 267
Query: 537 SRWFNL 542
W L
Sbjct: 268 EHWHQL 273
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 30/165 (18%), Positives = 51/165 (30%), Gaps = 34/165 (20%)
Query: 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAK---YGQKWVRTRTVVDSLSPKWNE 651
L + IL A L G D Y +K +T+ +L+P +NE
Sbjct: 17 YGSDQLVVRILQALDLPAK----DSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 72
Query: 652 QYTWEVFD---PCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRI--RLSTLESDRVYT 706
+ + V + V+D + R IG+V + L E
Sbjct: 73 TFQFSVPLAELAQRKLHFSVYD---------FDRFSRHDLIGQVVLDNLLELAEQPPDRP 123
Query: 707 HSYPLLMLHPSGVKKMGELHLAVRF------------SCANLVNM 739
+L +GEL+ ++ + +NL M
Sbjct: 124 LWRDILEGGSEKA-DLGELNFSLCYLPTAGLLTVTIIKASNLKAM 167
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 1e-17
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 11/126 (8%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEV-----EFEKQILRTQVKYKDLNPIWNEKLVF 59
L++ +I L+ K G+ P+V++ + + +TQ +P ++E F
Sbjct: 26 DRVLLLHIIEGKGLISKQP-GTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFF 84
Query: 60 DVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLF 119
V E K + V V+N S +G + L + + Y L L
Sbjct: 85 PVQ--EEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSL-LTPDKEISGWYYLLGEHLG 141
Query: 120 S--HIR 123
H++
Sbjct: 142 RTKHLK 147
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 6e-09
Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 41/158 (25%)
Query: 426 KLWY------LRVSVIEAQDIVPGDKGSA-----MMRFPELHAKAQVGNQFLKTRIAAPS 474
+L L + +IE + ++ G+ + PE KT+
Sbjct: 19 RLSIDAQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRH-----QKTQTV--- 70
Query: 475 ATRSLSNPCWNEDLLFVVAEPFEDY---LLISVEDHVGPGK-DEIVGKVLIPVSAVERRT 530
+P ++E F V ED LL++V + + ++G + V ++
Sbjct: 71 --PDCRDPAFHEHFFFPV--QEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLL--- 123
Query: 531 DDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSL 568
+ +S W+ L GE G HL+V+
Sbjct: 124 TPDKEISGWYYL------LGEHL-----GRTKHLKVAR 150
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 25/125 (20%)
Query: 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYC-------VAKYGQKWVRTRTVVDSLSPKWN 650
VL + I+ GL+ + G+ D Y ++ + +T+TV D P ++
Sbjct: 27 RVLLLHIIEGKGLISKQ-----PGTCDPYVKISLIPEDSRLRHQ--KTQTVPDCRDPAFH 79
Query: 651 EQYTWEVF--DPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLES-DRVYTH 707
E + + V D + V V++ S + IG + + +L + D+ +
Sbjct: 80 EHFFFPVQEEDDQKRLLVTVWNRASQ--------SRQSGLIGCMSFGVKSLLTPDKEISG 131
Query: 708 SYPLL 712
Y LL
Sbjct: 132 WYYLL 136
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 1e-17
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEV-----EFEKQILRTQVKYKDLNPIWNEKLVF 59
L +I A L P D G + P+V++ + LRT+ NP+WNE L +
Sbjct: 28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 87
Query: 60 DVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGE 105
++ K + ++V +E + F+G+ R +L N+ +
Sbjct: 88 HGITEEDMQRKTLRISVCDEDKFG-HNEFIGETRFSLKKLKANQRK 132
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-07
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 22/126 (17%)
Query: 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVA-----KYGQKWVRTRTVVDSLSPKW 649
L+ I+ A GL PM G D Y +RT+T+ ++ +P W
Sbjct: 26 QDNSNLQCTIIRAKGLKPM----DSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVW 81
Query: 650 NEQYTWEVFDPC----TVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVY 705
NE + + + V D + G + IG+ R L L++++
Sbjct: 82 NETLQYHGITEEDMQRKTLRISVCDE---------DKFGHNEFIGETRFSLKKLKANQRK 132
Query: 706 THSYPL 711
+ L
Sbjct: 133 NFNICL 138
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 30/135 (22%), Positives = 47/135 (34%), Gaps = 31/135 (22%)
Query: 426 KLWY------LRVSVIEAQDIVPGDKGSA------MMRFPELHAKAQVGNQFLKTRIAAP 473
L Y L+ ++I A+ + P D + P + L+T+
Sbjct: 21 SLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNK-----LRTKTL-- 73
Query: 474 SATRSLSNPCWNEDLLFVVAEPFEDY----LLISVEDHVGPGKDEIVGKVLIPVSAVERR 529
R+ NP WNE L + ED L ISV D G +E +G+ + +
Sbjct: 74 ---RNTRNPVWNETLQYHGI-TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL--- 126
Query: 530 TDDKQVVSRWFNLEN 544
Q + LE
Sbjct: 127 -KANQRKNFNICLER 140
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 2e-17
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVF 59
+E L+V V A NL+P D G S P+V+++ + +T+ LNP WNE F
Sbjct: 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 89
Query: 60 DVPDIAELPYKHIEVNVFNERRSSNSRN-FLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117
+ + + + V +++ + SRN F+G + S+L + + L +
Sbjct: 90 QLKE--SDKDRRLSVEIWDWDLT--SRNDFMGSLSFGISEL---QKAGVDGWFKLLSQE 141
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 4e-08
Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 26/131 (19%)
Query: 426 KLWY----LRVSVIEAQDIVPGDKGSA------MMRFPELHAKAQVGNQFLKTRIAAPSA 475
+ L V V +A+++VP D + P+ KT+
Sbjct: 25 QAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPK-----SESKQKTKTIK--- 76
Query: 476 TRSLSNPCWNEDLLFVVAEPFED-YLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQ 534
SL NP WNE F + E +D L + + D +++ +G + +S + K
Sbjct: 77 -CSL-NPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL-----QKA 129
Query: 535 VVSRWFNLENH 545
V WF L +
Sbjct: 130 GVDGWFKLLSQ 140
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 5e-08
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 21/122 (17%)
Query: 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCV-----AKYGQKWVRTRTVVDSLSPKWNEQ 652
VL + + A L+PM G D Y + +T+T+ SL+P+WNE
Sbjct: 31 EVLIVVVRDAKNLVPMDP----NGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNET 86
Query: 653 YTWEVF--DPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYP 710
+ +++ D ++V ++D + R+ +G + +S L+ V +
Sbjct: 87 FRFQLKESDKDRRLSVEIWD---------WDLTSRNDFMGSLSFGISELQKAGV-DGWFK 136
Query: 711 LL 712
LL
Sbjct: 137 LL 138
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 2e-17
Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 10/145 (6%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFDV 61
+L+V +I A L D G+S P+V+V +K+ T+V K LNP++NE+ F V
Sbjct: 18 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 77
Query: 62 PDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSH 121
P +EL K + + V++ R S +G+ + P + +
Sbjct: 78 PY-SELAGKTLVMAVYDFDRFSKHD-IIGEFKVPMNTVDFGHVT-EEWRDLQSAEKEEQE 134
Query: 122 IRGEISLKLFVSTTEE----VVKKG 142
G+I L T V+ +
Sbjct: 135 KLGDICFSLRYVPTAGKLTVVILEA 159
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 81.4 bits (201), Expect = 7e-17
Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 22/140 (15%)
Query: 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVFD 60
KL V ++ A NL D G S P+V++ + +T +K LNP +NE F+
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209
Query: 61 VPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCS----------QLCKNEGEATAQL 110
VP ++ + V V + + + +GKV + + N AQ
Sbjct: 210 VPF-EQIQKVQVVVTVLDYDKIG-KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQW 267
Query: 111 YTLEKRSLFSHIRGEISLKL 130
+TL+ + L +
Sbjct: 268 HTLQVEE-----EVDAMLAV 282
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 3e-12
Identities = 60/278 (21%), Positives = 102/278 (36%), Gaps = 70/278 (25%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQV---GNQFLKTRIAAPSATRSLSNPCWNE 486
L V +I+A ++ D G + K + + +T++ R NP +NE
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPY----VKVFLLPDKKKKFETKV-----HRKTLNPVFNE 71
Query: 487 DLLFVV--AEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLEN 544
F V +E L+++V D K +I+G+ +P++ V D V W +L++
Sbjct: 72 QFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV----DFGHVTEEWRDLQS 127
Query: 545 HFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEATLYSSDVKPTAKQLWKPHIGVLEMGI 604
+ E F R + P G L + I
Sbjct: 128 AEKEEQEKLGDICFSLR-------------------------------YVPTAGKLTVVI 156
Query: 605 LGATGLMPMKFKEGKGGSVDAYCVAKY---GQKWV--RTRTVVDSLSPKWNEQYTWEV-- 657
L A L M GG D Y G++ +T ++L+P +NE +++EV
Sbjct: 157 LEAKNLKKMD----VGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPF 212
Query: 658 FDPCTV-ITVGVFDNCSLDKNIINNSGGRDSRIGKVRI 694
V + V V D + G++ IGKV +
Sbjct: 213 EQIQKVQVVVTVLD---------YDKIGKNDAIGKVFV 241
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 4e-09
Identities = 51/305 (16%), Positives = 109/305 (35%), Gaps = 71/305 (23%)
Query: 265 YDLVEQMQYLYVRVVKARD-ISLFGGGEIVAEVKL-----GNYRGITKRVSSN-HLQWDQ 317
YD Q L V +++A + +L GG VK+ + TK + +++
Sbjct: 14 YD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 71
Query: 318 VFAF--SKDCIQSSAAEIFVKESD---KDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRME 372
F F + + V + D K D +G +N V + +W ++
Sbjct: 72 QFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF-----GHVTEEWRDLQ 126
Query: 373 DRRGDRSKG-GEVMVSIWFGTQADEAFAEAWHSKAANVHFDGLCSLKSKVYLSPKLWYLR 431
+ + G++ S+ + A + L
Sbjct: 127 SAEKEEQEKLGDICFSLRYVPTAGK---------------------------------LT 153
Query: 432 VSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLLFV 491
V ++EA+++ D G + + K + + + + ++ NP +NE F
Sbjct: 154 VVILEAKNLKKMDVG----GLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209
Query: 492 VAEPFED----YLLISVEDHVGPGKDEIVGKVLIPVSAVERRTD--------DKQVVSRW 539
V PFE ++++V D+ GK++ +GKV + ++ ++ +++W
Sbjct: 210 V--PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQW 267
Query: 540 FNLEN 544
L+
Sbjct: 268 HTLQV 272
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 31/163 (19%)
Query: 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAK---YGQKWVRTRTVVDSLSPKWNE 651
L +GI+ A L + GG+ D Y +K T+ +L+P +NE
Sbjct: 16 FQNNQLLVGIIQAAELPAL----DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 71
Query: 652 QYTWEVFD---PCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHS 708
Q+T++V + + V+D + + IG+ ++ ++T++ V
Sbjct: 72 QFTFKVPYSELAGKTLVMAVYDF---------DRFSKHDIIGEFKVPMNTVDFGHVTEEW 122
Query: 709 YPLLMLHPSGVKKMGELHLAVRFS------------CANLVNM 739
L +K+G++ ++R+ NL M
Sbjct: 123 RDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKM 165
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 3e-17
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVF 59
+ KL+V V A NL+ +GS P+V + +T V K LNP++++ F
Sbjct: 23 RNKLIVVVHACRNLIAFSEDGSD-PYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDF 81
Query: 60 DVPDIAELPYKHIEVNVFNERR-SSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117
V + E+ + ++V V N S + LGKV + + Q Y L + S
Sbjct: 82 SVS-LPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASE--ELAKGWTQWYDLTEDS 137
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 8e-06
Identities = 20/135 (14%), Positives = 54/135 (40%), Gaps = 33/135 (24%)
Query: 426 KLWY------LRVSVIEAQDIVPGDKGSA-----MMRFPELHAKAQVGNQFLKTRIAAPS 474
+ + L V V ++++ + + M P+ + KT ++
Sbjct: 16 TIRHSSQRNKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGR-----RKTHVS--- 67
Query: 475 ATRSLSNPCWNEDLLFVVAEPFED----YLLISVEDHVGPGKDE--IVGKVLIPVSAVER 528
+ NP +++ F V + L ++V++ G + ++GKVL+ +++
Sbjct: 68 --KKTLNPVFDQSFDFSV--SLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASE-- 121
Query: 529 RTDDKQVVSRWFNLE 543
+ + ++W++L
Sbjct: 122 --ELAKGWTQWYDLT 134
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 4e-05
Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 24/128 (18%)
Query: 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYC-------VAKYGQKWVRTRTVVDSLSP 647
L + + L+ + GS D Y + G++ +T +L+P
Sbjct: 21 SQRNKLIVVVHACRNLIAF----SEDGS-DPYVRMYLLPDKRRSGRR--KTHVSKKTLNP 73
Query: 648 KWNEQYTWEVFD---PCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRV 704
+++ + + V + V V ++ +GKV + L++ E +
Sbjct: 74 VFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSK-------DKGLLGKVLVALASEELAKG 126
Query: 705 YTHSYPLL 712
+T Y L
Sbjct: 127 WTQWYDLT 134
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 3e-17
Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 21/129 (16%)
Query: 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEV-------EFEKQILRTQVKYKDLNPIWNEKLV 58
L+V +I +L D G S PFV++ + K +TQ+K K LNP +NE+
Sbjct: 37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKH--KTQIKKKTLNPEFNEEFF 94
Query: 59 FDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCS----------QLCKNEGEATA 108
+D+ ++L K ++++V++ S +++G + S + KN+ +
Sbjct: 95 YDIK-HSDLAKKSLDISVWDYDIGK-SNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE 152
Query: 109 QLYTLEKRS 117
+ + L+ +
Sbjct: 153 RWHQLQNEN 161
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 5e-05
Identities = 27/145 (18%), Positives = 47/145 (32%), Gaps = 38/145 (26%)
Query: 426 KLWY------LRVSVIEAQDIVPGDKGSAMMRFPE-------LHAKAQVGNQFLKTRIAA 472
L Y L V +I + D + + + KT+I
Sbjct: 29 SLMYSTQQGGLIVGIIRCVHLAAMDAN----GYSDPFVKLWLKPDMGKKAKH--KTQIK- 81
Query: 473 PSATRSLSNPCWNEDLLFVVAEPFED----YLLISVEDHVGPGKDEIVGKVLIPVSAVER 528
+ NP +NE+ + + D L ISV D+ ++ +G + +SA
Sbjct: 82 ----KKTLNPEFNEEFFYDI--KHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGE 135
Query: 529 RTD--------DKQVVSRWFNLENH 545
R + + RW L+N
Sbjct: 136 RLKHWYECLKNKDKKIERWHQLQNE 160
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 4e-17
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 26/142 (18%)
Query: 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEV-------EFEKQILRTQVKYKDLNPIWNEKLV 58
KL V ++ A NL D G S P+V++ +K+ +T +K LNP +NE
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKK--KTTIKKNTLNPYYNESFS 82
Query: 59 FDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCS----------QLCKNEGEATA 108
F+VP ++ + V V + + + +GKV + + N A
Sbjct: 83 FEVPF-EQIQKVQVVVTVLDYDKIG-KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140
Query: 109 QLYTLEKRSLFSHIRGEISLKL 130
Q +TL+ + L +
Sbjct: 141 QWHTLQVEE-----EVDAMLAV 157
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 7e-06
Identities = 27/134 (20%), Positives = 59/134 (44%), Gaps = 32/134 (23%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPE-------LHAKAQVGNQFLKTRIAAPSATRSLSNP 482
L V ++EA+++ D G + + ++ + KT I ++ NP
Sbjct: 27 LTVVILEAKNLKKMDVG----GLSDPYVKIHLMQNGKRLKKK--KTTIK-----KNTLNP 75
Query: 483 CWNEDLLFVVAEPFED----YLLISVEDHVGPGKDEIVGKVLIPVSAV--------ERRT 530
+NE F V PFE ++++V D+ GK++ +GKV + ++ +
Sbjct: 76 YYNESFSFEV--PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLA 133
Query: 531 DDKQVVSRWFNLEN 544
+ ++ +++W L+
Sbjct: 134 NPRRPIAQWHTLQV 147
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 7e-17
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 21/125 (16%)
Query: 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEV-------EFEKQILRTQVKYKDLNPIWNEKLV 58
L V V+ A +L D G S P+V+V K+ +T VK N ++NE V
Sbjct: 30 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKK--KTHVKKCTPNAVFNELFV 87
Query: 59 FDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCS----------QLCKNEGEATA 108
FD+P L +E V + R S +G++ + ++C A
Sbjct: 88 FDIP-CESLEEISVEFLVLDSERGS-RNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIA 145
Query: 109 QLYTL 113
+ + L
Sbjct: 146 KWHML 150
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 23/134 (17%), Positives = 52/134 (38%), Gaps = 32/134 (23%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPE-------LHAKAQVGNQFLKTRIAAPSATRSLSNP 482
L V V++A+ + D + HAK ++ + KT + + N
Sbjct: 32 LTVVVLKARHLPKSDVS----GLSDPYVKVNLYHAKKRISKK--KTHVK-----KCTPNA 80
Query: 483 CWNEDLLFVVAEPFED----YLLISVEDHVGPGKDEIVGKVLIPVSAVERRTD------- 531
+NE +F + P E + V D ++E++G++++ +A
Sbjct: 81 VFNELFVFDI--PCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICD 138
Query: 532 -DKQVVSRWFNLEN 544
++ +++W L +
Sbjct: 139 FPRRQIAKWHMLCD 152
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 1e-16
Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 9/118 (7%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEV-----EFEKQILRTQVKYKDLNPIWNEKLVF 59
L + V+ +L+ +DG +P+V+ + +T++ K NP +NE LV+
Sbjct: 19 NGTLFIMVMHIKDLVTEDG-ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVY 77
Query: 60 DVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117
L + ++++V + FLG + P N + T + Y L +
Sbjct: 78 SGYSKETLRQRELQLSVLSAESLR-ENFFLGGITLPLKDF--NLSKETVKWYQLTAAT 132
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 6e-07
Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 28/131 (21%)
Query: 426 KLWY----LRVSVIEAQDIVPGDKGSA-----MMRFPELHAKAQVGNQFLKTRIAAPSAT 476
+ Y L + V+ +D+V D P+ H ++ KT+I+
Sbjct: 14 SVSYRNGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSK-----RKTKIS----- 63
Query: 477 RSLSNPCWNEDLLFVVAEPFED----YLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDD 532
R NP +NE L++ E L +SV ++ +G + +P+ +
Sbjct: 64 RKTRNPTFNEMLVYSGY-SKETLRQRELQLSVLSAESLRENFFLGGITLPLKDF----NL 118
Query: 533 KQVVSRWFNLE 543
+ +W+ L
Sbjct: 119 SKETVKWYQLT 129
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 8e-06
Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 27/126 (21%)
Query: 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYC-------VAKYGQKWVRTRTVVDSLSPKWN 650
G L + ++ L+ G + Y K ++ +T+ + +P +N
Sbjct: 20 GTLFIMVMHIKDLVTED-----GADPNPYVKTYLLPDTHKTSKR--KTKISRKTRNPTFN 72
Query: 651 EQYTWEVFDPCTVIT----VGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYT 706
E + + T+ + V S + +G + + L +
Sbjct: 73 EMLVYSGYSKETLRQRELQLSVLSA---------ESLRENFFLGGITLPLKDFNLSKETV 123
Query: 707 HSYPLL 712
Y L
Sbjct: 124 KWYQLT 129
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 1e-16
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 5 KEKLVVEVIAAHNLMPKDGEG-SSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFD 60
++ VV + A L D + +S P++++ +K ++T+V K L+P ++E F
Sbjct: 21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFY 80
Query: 61 VPDIAELPYKHIEVNVFNERRSSNSRN-FLGKVRAPCSQL 99
++ + + + R SR+ +G+V P S +
Sbjct: 81 GIPYTQIQELALHFTILSFDRF--SRDDIIGEVLIPLSGI 118
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 19/130 (14%)
Query: 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAK---YGQKWVRTRTVVDSLSPKWNE 651
+ I A GL M + + + D Y + V+TR + +L P ++E
Sbjct: 19 FERKAFVVNIKEARGLPAM---DEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDE 75
Query: 652 QYTWEVFDPCTV----ITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTH 707
+T+ + + + + RD IG+V I LS +E
Sbjct: 76 TFTFYGIPYTQIQELALHFTILS---------FDRFSRDDIIGEVLIPLSGIELSEGKML 126
Query: 708 SYPLLMLHPS 717
++ PS
Sbjct: 127 MNREIISGPS 136
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 8e-05
Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 31/133 (23%)
Query: 426 KLWY------LRVSVIEAQDIVPGDKGSA-------MMRFPELHAKAQVGNQFLKTRIAA 472
L Y V++ EA+ + D+ S M PE +KTR+
Sbjct: 14 SLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE-------KKHKVKTRV-- 64
Query: 473 PSATRSLSNPCWNEDLLFVVAEPFEDY---LLISVEDHVGPGKDEIVGKVLIPVSAVERR 529
R +P ++E F + L ++ +D+I+G+VLIP+S +E
Sbjct: 65 ---LRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE-- 119
Query: 530 TDDKQVVSRWFNL 542
+ + +
Sbjct: 120 -LSEGKMLMNREI 131
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 77.3 bits (190), Expect = 1e-16
Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 28/149 (18%)
Query: 429 YLRVSVIEAQDIVPGDKGSAMMRFPELH------AKAQVGNQ-FLKTRIAAPSATRSLSN 481
YLRV + EA + P F + H V +T ++
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTK----QKTN-K 84
Query: 482 PCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFN 541
P +NE+ V + L ++V G D V + + R T W +
Sbjct: 85 PTYNEEFCANVTDGGH--LELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVD 142
Query: 542 LENHFGNQGESKVVTRFGSRIHLRVSLDG 570
LE +G ++ + ++L G
Sbjct: 143 LE----PEG----------KVFVVITLTG 157
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 74.2 bits (182), Expect = 2e-15
Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 23/155 (14%)
Query: 586 KPTAKQLWKPHIGVLEMGILGATGLMPMKFKEGK------GGSVDAYCVAKYGQKWV-RT 638
+ + G L + I A GL P ++ +D Y Q V +T
Sbjct: 17 RGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQT 76
Query: 639 RTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLST 698
T + P +NE++ V D + + VF L G D + ++
Sbjct: 77 STKQKTNKPTYNEEFCANVTDG-GHLELAVFHETPL---------GYDHFVANCTLQFQE 126
Query: 699 LESDRVYTHSYPL-LMLHPSGVKKMGELHLAVRFS 732
L + ++ + L P G++ + + +
Sbjct: 127 LLRTTGASDTFEGWVDLEPE-----GKVFVVITLT 156
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 3e-14
Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 26/137 (18%)
Query: 7 KLVVEVIAAHNLMPKD----------GEGSSSPFVEVEF-EKQILRTQVKYKDLNPIWNE 55
L V + A L P G P++ V + ++ +T K K P +NE
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89
Query: 56 KLVFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATA--QLYTL 113
+ +V D H+E+ VF+E +F+ +L + G + L
Sbjct: 90 EFCANVTDG-----GHLELAVFHETPLG-YDHFVANCTLQFQELLRTTGASDTFEGWVDL 143
Query: 114 EKRSLFSHIRGEISLKL 130
E G++ + +
Sbjct: 144 EP-------EGKVFVVI 153
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 3e-05
Identities = 25/134 (18%), Positives = 39/134 (29%), Gaps = 28/134 (20%)
Query: 273 YLYVRVVKARDI---------SLFGGGEIVA----EVKLGNYRGITKRVSSNHL--QWDQ 317
YL VR+ +A + SLF G + V + R +++
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89
Query: 318 VFAFSKDCIQSSAAEIFVKESD---KDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDR 374
F + E+ V D F+ E+ R S W +E
Sbjct: 90 EFCA--NVTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRT-TGASDTFEGWVDLEPE 146
Query: 375 RGDRSKGGEVMVSI 388
G+V V I
Sbjct: 147 -------GKVFVVI 153
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 83.0 bits (204), Expect = 3e-16
Identities = 69/482 (14%), Positives = 142/482 (29%), Gaps = 109/482 (22%)
Query: 485 NEDLLFVVAEPF-EDYLLISVEDHVGPG-KDEIVGKVLIPVSAVER--------RTDDKQ 534
+D+L V + F +++ V+D E + +++ AV + ++
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 535 VVSRWFN--LENHFG---------NQGESKVVTRFGS---RIHLRVSLDGGYHVLDEATL 580
+V ++ L ++ + S + + R++ + Y+V
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 581 YSSDVKPTAKQLWKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAK---------Y 631
++ +L +P VL G+LG+ GK + A V +
Sbjct: 138 --LKLRQALLEL-RPAKNVLIDGVLGS----------GK--TWVALDVCLSYKVQCKMDF 182
Query: 632 GQKWV---RTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSR 688
W+ + L I NI R
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKL---------LYQIDPNWTSRSDHSSNIK-------LR 226
Query: 689 IGKVRIRLSTLESDRVYTHSYPLLML----HPSGVKKMGELHLAVRFSCANLVNMLHMYA 744
I ++ L L + Y + LL+L + SC L+
Sbjct: 227 IHSIQAELRRLLKSKPYENC--LLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQV 277
Query: 745 MPLLPKMHYVHPLSVHQLETL-RYQALNVVSSWLNRAEPPLGRESMRNWHKPIYSTLSLA 803
L H H TL + +++ +L+ L RE + P
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT--TNP-------- 327
Query: 804 FFFLLVLMPELVIPAILLYLSLLGLWRYRSRSRHPPHMDIRLSQADSVFPDELDEEFDS- 862
L ++ E + L+ W++ + + ++ L+ + P E + FD
Sbjct: 328 --RRLSIIAESIRD----GLATWDNWKHVNCDKLTTIIESSLNVLE---PAEYRKMFDRL 378
Query: 863 --FPTSRGADIVRIRYDRLRSV-AGRIQTVVGDMATQGERFQALISWRDPRATFLFVIFC 919
FP S I L + I++ V + + ++ + + I+
Sbjct: 379 SVFPPS-----AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 920 LF 921
Sbjct: 434 EL 435
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 2e-08
Identities = 109/762 (14%), Positives = 214/762 (28%), Gaps = 269/762 (35%)
Query: 33 VEFEKQILRTQVKYKDLNPIWNEKLV--FDVPDIAELPYKHIEVNVFNERRSSNSRNFLG 90
++FE Q +YKD+ ++ + V FD D+ ++P ++ L
Sbjct: 7 MDFETGEH--QYQYKDILSVFEDAFVDNFDCKDVQDMP-----------------KSILS 47
Query: 91 KVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTTEEVVKKGGFV-SSLT 149
K + +A + L +S EE+V+K FV L
Sbjct: 48 K--EEIDHII-MSKDAVSGTLRL--------------FWTLLSKQEEMVQK--FVEEVLR 88
Query: 150 PSSAF--SKKNKKLQQQSPVMQ--VQQQHFGHQDM-------MSKPTHQQQSQNHVKPME 198
+ F S + +Q S + + ++Q+ + D +S+ + + + +
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 199 PNPGELKPVVITTAPRPVIPGARGGPTFGGGGGGGVYVNGSGEFSL-------KETSPHL 251
P V+I G G SG+ + + +
Sbjct: 149 PAKN----VLI----------------DGVLG--------SGKTWVALDVCLSYKVQCKM 180
Query: 252 GGGP--LNKDKTSSTYDLVEQMQYLYVRVVKARDISLFGGGEI---VAEVKLGNYRGITK 306
LN +S ++E +Q L ++ I + ++ R +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 307 RVSSNHLQ-----WD-QVF-AFSKDCIQSSAAEIFVKESDKD--DFLGRIWFDLNEVPRR 357
+ N L + + + AF+ C +I + K DFL
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSC------KILLTTRFKQVTDFLS------AATTTH 288
Query: 358 VPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGTQADEAFAEAWHSKAANVHFDGLCSL 417
+ ++ + + K + L
Sbjct: 289 IS-----------LDHHSMTLTP-----------DEVKSLLL-----KYLDCRPQDLPRE 321
Query: 418 KSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAK--AQVGNQFLKTRIAAPSA 475
+P R+S+I + +R V L T I +
Sbjct: 322 VLTT--NP----RRLSII-----------AESIRDGLATWDNWKHVNCDKLTTIIES--- 361
Query: 476 TRSLSNPCWNEDLLFVVAEPFED---YLLISV--EDHVGPGKDEIVGKVLIPVSAVERRT 530
SL L EP E + +SV IP
Sbjct: 362 --SL------NVL-----EPAEYRKMFDRLSVFPPS------------AHIPT------- 389
Query: 531 DDKQVVSR-WFNLENHFGNQGESKVVTRFGSR-------------IHLRVSLDGGYHVLD 576
++S WF++ VV + I + L+ + +
Sbjct: 390 ---ILLSLIWFDVI----KSDVMVVVNKLHKYSLVEKQPKESTISIPS-IYLELKVKLEN 441
Query: 577 EATL-------------YSSD--VKPTAKQLWKPHIG--VLEMGILGATGLMPM-----K 614
E L + SD + P Q + HIG + + L M +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 615 FKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSP-KWNEQYTWEVFDPCTVITVGVFD--- 670
F E K + W + +++++L K+ + Y + D V
Sbjct: 502 FLEQK--------IRHDSTAWNASGSILNTLQQLKFYKPY---ICDNDPKYERLVNAILD 550
Query: 671 ---NCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSY 709
+N+I + + + +RI L E + ++ ++
Sbjct: 551 FLPKIE--ENLIC---SKYTDL--LRIALMA-EDEAIFEEAH 584
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 2e-07
Identities = 105/715 (14%), Positives = 201/715 (28%), Gaps = 219/715 (30%)
Query: 268 VEQMQYLYVRVVKARDISLFGGGEIVAEVKLGNYRGITKRVSSNHLQWDQVFAFSK---- 323
+ QY Y +DI V + + + K + S + D +
Sbjct: 11 TGEHQYQY------KDILSVFEDAFVDNFDCKDVQDMPKSILSKE-EIDHIIMSKDAVSG 63
Query: 324 -----DCI---QSSAAEIFVKESDKDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRR 375
+ Q + FV+E + ++ + L + E R
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINY---KF---------------LMSPI-KTEQR- 103
Query: 376 GDRSKGGEVMVSIWFGTQADEAFAEAWHSKAANVHFDGLCSLKSKVYLSPKLWYLRVSVI 435
S M++ + Q D + + N F K V LR +++
Sbjct: 104 -QPS-----MMTRMYIEQRDRLYND-------NQVFA-----KYNVSRLQPYLKLRQALL 145
Query: 436 EAQD----IVPGDKGS-------AMMRFPELHAK-------AQVGN-----------QFL 466
E + ++ G GS + ++ K + N Q L
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 467 KTRIAAPSATRS--LSNPCWNEDLL------FVVAEPFEDYLLISVEDHVGPGKD-EIVG 517
+I +RS SN + + ++P+E+ LL+ +V ++ +
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL--LNV---QNAKAWN 260
Query: 518 ------KVLIPVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDGG 571
K+L+ T KQV + + T S H ++L
Sbjct: 261 AFNLSCKILLT-------TRFKQVT-----------DFLSAATTTHI-SLDHHSMTLT-- 299
Query: 572 YHVLDEA-TLYSSDVKPTAKQLWKPH----IGVLEMGILGATGLMPMKFKEGKGGSVDAY 626
DE +L + + L P + I+ ++G D +
Sbjct: 300 ---PDEVKSLLLKYLDCRPQDL--PREVLTTNPRRLSIIAE------SIRDGLATW-DNW 347
Query: 627 CVAKYGQKWVRTRTV---VDSLSPKWNEQYTWE--VFDPCTVITVGVFDNCSLDKNIINN 681
K+ T + ++ L P + VF P I + + ++I +
Sbjct: 348 ---KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL--SLIWFDVIKS 402
Query: 682 SGGRDSRIGKVRIRLSTLESDRV-YTHSYPLLMLHPSG-VKKMGELHLAVRFSCANLVNM 739
+ + S +E T S P + L ++ LH ++V+
Sbjct: 403 D---VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH-------RSIVD- 451
Query: 740 LHMYAMPL------LPKMH-----YVHPLSVHQLETLRYQALNVVSSWLNRAEPPLGRES 788
Y +P L + Y H + H L E P
Sbjct: 452 --HYNIPKTFDSDDLIPPYLDQYFYSH-IGHH----------------LKNIEHPERMTL 492
Query: 789 MRNWHKPIYSTLSLAFFFLLVLMPELVIPAILLYLSLLG-LWRYRSR-SRHPPHMDIRLS 846
R ++ L F + A L+ L L Y+ + P
Sbjct: 493 FRM----VF--LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK------ 540
Query: 847 QADSVFPDELDEEFDSFPTSRGADIVRIRYDRLRSVA--GRIQTVVGDMATQGER 899
+ L F +++ +Y L +A + + + Q +R
Sbjct: 541 ------YERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 5e-16
Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 28/148 (18%)
Query: 598 GVLEMGILGATGLMPMKF-------KEGKGGSVDAYCVAKYG-QKWVRTRTVVDSLSPKW 649
G+L++ I A L P + + +D Y + +T T + SP W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 650 NEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTL--ESDRVYTH 707
++++ +V + I + VF + + G D + I+ L R +
Sbjct: 66 HDEFVTDVCNG-RKIELAVFHDAPI---------GYDDFVANCTIQFEELLQNGSRHFED 115
Query: 708 SYPLLMLHPSGVKKMGELHLAVRFSCAN 735
L + G++++ + S ++
Sbjct: 116 WIDL--------EPEGKVYVIIDLSGSS 135
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 7e-15
Identities = 21/150 (14%), Positives = 48/150 (32%), Gaps = 31/150 (20%)
Query: 429 YLRVSVIEAQDIVPGDKGSAMMRFPELH-------AKAQVGNQ-FLKTRIAAPSATRSLS 480
L++ + EA + P P V + +T ++
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQ----KTN- 61
Query: 481 NPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWF 540
+P W+++ + V + ++V G D+ V I + + + W
Sbjct: 62 SPAWHDEFVTDVCNG--RKIELAVFHDAPIGYDDFVANCTIQFEEL--LQNGSRHFEDWI 117
Query: 541 NLENHFGNQGESKVVTRFGSRIHLRVSLDG 570
+LE +G ++++ + L G
Sbjct: 118 DLE----PEG----------KVYVIIDLSG 133
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 9e-15
Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 25/139 (17%)
Query: 7 KLVVEVIAAHNLMPKD-----------GEGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWN 54
L +++ A +L P P++ + + I +T K K +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 55 EKLVFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114
++ V DV + + IE+ VF++ +F+ +L +N LE
Sbjct: 67 DEFVTDVCNG-----RKIELAVFHDAPIG-YDDFVANCTIQFEELLQNGSRHFEDWIDLE 120
Query: 115 KRSLFSHIRGEISLKLFVS 133
G++ + + +S
Sbjct: 121 P-------EGKVYVIIDLS 132
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-06
Identities = 21/142 (14%), Positives = 37/142 (26%), Gaps = 32/142 (22%)
Query: 273 YLYVRVVKARDI--------SLFGGGEIV------AEVKLGNYRGITKRVSSNHL--QWD 316
L +++ +A + G + + + R W
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 317 QVFAFSKDCIQSSAAEIFVKESD---KDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMED 373
F D E+ V DDF+ E+ + S+ W +E
Sbjct: 67 DEFVT--DVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQN---GSRHFEDWIDLE- 120
Query: 374 RRGDRSKGGEVMVSIWF-GTQA 394
G+V V I G+
Sbjct: 121 ------PEGKVYVIIDLSGSSG 136
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 1e-15
Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 13/118 (11%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEV----EFEKQILRTQVKYKDLNPIWNEKLVFD 60
K +L V + A + +G +V+ +T +K + L+ W E LV
Sbjct: 25 KAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP 81
Query: 61 VPDIAELPYKHIEVNVFNERRSSNSRN-FLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117
+ + ELP + + + R SR+ G++R + AQ L+
Sbjct: 82 LAE-EELPTATLTLTLRTCDRF--SRHSVAGELRLGLDGT--SVPLGAAQWGELKTSG 134
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 16/128 (12%), Positives = 42/128 (32%), Gaps = 24/128 (18%)
Query: 426 KLWY------LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSL 479
L Y L V+ +EA + + + + G+ +T + +
Sbjct: 18 CLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALK-----KRQ 69
Query: 480 SNPCWNEDLLFVVAEPFEDY----LLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQV 535
+ W E L+ + E+ L +++ + + G++ + +
Sbjct: 70 LHTTWEEGLVLPL--AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGT----SVPLG 123
Query: 536 VSRWFNLE 543
++W L+
Sbjct: 124 AAQWGELK 131
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 12/78 (15%)
Query: 637 RTRTVVDSLSPKWNEQYTWEVFD---PCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVR 693
+T L W E + + P +T+ + + R S G++R
Sbjct: 62 QTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTC---------DRFSRHSVAGELR 112
Query: 694 IRLSTLESDRVYTHSYPL 711
+ L L
Sbjct: 113 LGLDGTSVPLGAAQWGEL 130
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 6e-15
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 14/123 (11%)
Query: 5 KEKLVVEVIAAHNLMP-------KDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWN 54
L V VI A +L P + S+P+V++ +K +T VK K P++
Sbjct: 25 HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFE 84
Query: 55 EKLVFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114
E+ F++P E + + + V + + S +GKV P ++ +G L
Sbjct: 85 ERYTFEIP-FLEAQRRTLLLTVVDFDKFS-RHCVIGKVSVPLCEVDLVKG--GHWWKALI 140
Query: 115 KRS 117
Sbjct: 141 PSG 143
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 8e-07
Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 18/126 (14%)
Query: 595 PHIGVLEMGILGATGLMPMKFKEG---KGGSVDAYCVAKY---GQKWVRTRTVVDSLSPK 648
L + ++ A L P +G + Y + +T + P
Sbjct: 23 LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPV 82
Query: 649 WNEQYTWEVFD---PCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVY 705
+ E+YT+E+ + + V D + R IGKV + L ++ +
Sbjct: 83 FEERYTFEIPFLEAQRRTLLLTVVD---------FDKFSRHCVIGKVSVPLCEVDLVKGG 133
Query: 706 THSYPL 711
L
Sbjct: 134 HWWKAL 139
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 29/136 (21%), Positives = 47/136 (34%), Gaps = 27/136 (19%)
Query: 426 KLWY------LRVSVIEAQDIVPGDKGSAMMRFPEL---HAKAQV---GNQFLKTRIAAP 473
Y L V VIEA+D+ P + + K + +T +
Sbjct: 18 STQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVK-- 75
Query: 474 SATRSLSNPCWNEDLLFVVAEPFEDY----LLISVEDHVGPGKDEIVGKVLIPVSAVERR 529
R P + E F + PF + LL++V D + ++GKV +P+ V
Sbjct: 76 ---RKTQKPVFEERYTFEI--PFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEV--- 127
Query: 530 TDDKQVVSRWFNLENH 545
D + W L
Sbjct: 128 -DLVKGGHWWKALIPS 142
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 9e-15
Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 8/109 (7%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEV------EFEKQILRTQVKYKDLNPIWNEKLV 58
++ + +I NL + + V E + RT+ ++NE
Sbjct: 42 NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFW 101
Query: 59 FDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEAT 107
+ L K + V+V RS LG + +++C++ +T
Sbjct: 102 VSMSY-PALHQKTLRVDVCTTDRSH-LEECLGGAQISLAEVCRSGERST 148
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 19/135 (14%), Positives = 44/135 (32%), Gaps = 30/135 (22%)
Query: 426 KLWY------LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQV------GNQFLKTRIAAP 473
L Y + +I+ ++ + + +++ + V +TR
Sbjct: 35 ALKYDEKNKQFAILIIQLSNLSALLQQ----QDQKVNIRVAVLPCSESTTCLFRTRPL-- 88
Query: 474 SATRSLSNPCWNEDLLFVVAEPFEDY----LLISVEDHVGPGKDEIVGKVLIPVSAVERR 529
+ +NE + + L + V +E +G I ++ V R
Sbjct: 89 ---DASDTLVFNEVFWVSM--SYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRS 143
Query: 530 TDDKQVVSRWFNLEN 544
+ +RW+NL +
Sbjct: 144 GE---RSTRWYNLLS 155
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 4e-04
Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 19/123 (15%)
Query: 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYC------VAKYGQKWVRTRTVVDSLSPKWNE 651
+ I+ + L + + ++ RTR + S + +NE
Sbjct: 43 KQFAILIIQLSNLSALLQQ----QDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNE 98
Query: 652 QYTWEVFDPCTVITVGVFDNCSLDKNIIN-NSGGRDSRIGKVRIRLSTLE-SDRVYTHSY 709
+ ++ +L ++ + + +G +I L+ + S T Y
Sbjct: 99 VFWVS-------MSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWY 151
Query: 710 PLL 712
LL
Sbjct: 152 NLL 154
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-14
Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 14/124 (11%)
Query: 5 KEKLVVEVIAAHNLMPKD-GEGSSSPFVEV-------EFEKQILRTQVKYKDLNPIWNEK 56
+ LVV V H L D + S+P+V+ K+ +T +K +NP+++E
Sbjct: 22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKR--KTSIKRDTVNPLYDET 79
Query: 57 LVFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116
L +++P+ + L + ++ +V++ R FLG+ + L +
Sbjct: 80 LRYEIPE-SLLAQRTLQFSVWHHGRFG-RNTFLGEAEIQMDSW--KLDKKLDHCLPLHGK 135
Query: 117 SLFS 120
Sbjct: 136 ISAE 139
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 3e-07
Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 33/145 (22%)
Query: 426 KLWY------LRVSVIEAQDIVPGDKGSA-------MMRFPELHAKAQVGNQFLKTRIAA 472
L Y L V V E + D+ P+ + + KT I
Sbjct: 15 SLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGK-----RKTSIK- 68
Query: 473 PSATRSLSNPCWNEDLLFVVAEPFEDY----LLISVEDHVGPGKDEIVGKVLIPVSAVER 528
R NP ++E L + + P L SV H G++ +G+ I + +
Sbjct: 69 ----RDTVNPLYDETLRYEI--PESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSW-- 120
Query: 529 RTDDKQVVSRWFNLENHFGNQGESK 553
+ + L + E
Sbjct: 121 --KLDKKLDHCLPLHGKISAESEGH 143
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 20/139 (14%), Positives = 50/139 (35%), Gaps = 26/139 (18%)
Query: 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYC-------VAKYGQKWVRTRTVVDSLSPKWN 650
L + + L + + Y ++ G++ +T D+++P ++
Sbjct: 23 QSLVVHVKECHQLAYA---DEAKKRSNPYVKTYLLPDKSRQGKR--KTSIKRDTVNPLYD 77
Query: 651 EQYTWEVFD---PCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTH 707
E +E+ + + V+ + GR++ +G+ I++ + + D+ H
Sbjct: 78 ETLRYEIPESLLAQRTLQFSVWHHGRF---------GRNTFLGEAEIQMDSWKLDKKLDH 128
Query: 708 SYPLLMLHPSGVKKMGELH 726
PL + G H
Sbjct: 129 CLPL--HGKISAESEGHHH 145
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 4e-13
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 13/139 (9%)
Query: 5 KEKLVVEVIAAHNLMPKDG-EGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLV 58
K +L VEVI A +L K G + + +P+V+V +T++ K L+P++ + LV
Sbjct: 29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLV 88
Query: 59 FDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTL-EKRS 117
FD K ++V V+ + + + F+G + +L + Y L S
Sbjct: 89 FDE----SPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEEL--DLSSMVIGWYKLFPPSS 142
Query: 118 LFSHIRGEISLKLFVSTTE 136
L ++ + S+ E
Sbjct: 143 LVDPTLAPLTRRASQSSLE 161
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 4e-08
Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 18/144 (12%)
Query: 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAK--YGQKWV---RTRTVVDSLSPKWNEQ 652
G LE+ ++ A L G + Y + +TR +L P + +
Sbjct: 30 GQLEVEVIRARSLTQK---PGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQS 86
Query: 653 YTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712
++ V+ V V+ + +G +I L L+ + Y L
Sbjct: 87 LVFDESPQGKVLQVIVWGDYGR--------MDHKCFMGVAQILLEELDLSSMVIGWYKL- 137
Query: 713 MLHPSGVKKMGELHLAVRFSCANL 736
PS + L R S ++L
Sbjct: 138 -FPPSSLVDPTLAPLTRRASQSSL 160
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 3e-06
Identities = 30/145 (20%), Positives = 49/145 (33%), Gaps = 25/145 (17%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQV-----GNQFLKTRIAAPSATRSLSNPCW 484
L V VI A+ + + P + K + KTRIA R +P +
Sbjct: 32 LEVEVIRARSLTQKPGSKS---TPAPYVKVYLLENGACIAKKKTRIA-----RKTLDPLY 83
Query: 485 NEDLLFVVAEPFEDYLLISV-EDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLE 543
+ L+F P L + V D+ +G I + + D +V W+ L
Sbjct: 84 QQSLVFDE-SPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEEL----DLSSMVIGWYKL- 137
Query: 544 NHFGNQGESKVVTRFGSRIHLRVSL 568
S +V + + R S
Sbjct: 138 -----FPPSSLVDPTLAPLTRRASQ 157
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 63.4 bits (153), Expect = 3e-10
Identities = 21/146 (14%), Positives = 51/146 (34%), Gaps = 14/146 (9%)
Query: 265 YDLVEQMQY--LYVRVVKARDISLFGGGEIV------AEVKLG---NYRGITKRVSSN-H 312
+ +VE V V++A ++ G+++ E+ + + R T+ +++ +
Sbjct: 9 HIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDIN 68
Query: 313 LQWDQVFAFSKDCIQSSAAEIFVKESD--KDDFLGRIWFDLNEVPRRVPPDSQLAPQWYR 370
W++ F F D Q + EI + +++ D+ LG F ++ + +
Sbjct: 69 PVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVT 128
Query: 371 MEDRRGDRSKGGEVMVSIWFGTQADE 396
+ E
Sbjct: 129 EMVLEMSLEVCSCPDLRFSMALCDQE 154
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 62.3 bits (150), Expect = 6e-10
Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 11/103 (10%)
Query: 7 KLVVEVIAAHNLM---PKDGEGSSSPFVEV---EFEKQILRTQVKYKDLNPIWNEKLVFD 60
K V V+ A + D + P+VE+ RT+ D+NP+WNE F
Sbjct: 19 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 78
Query: 61 VPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNE 103
+ E +E+ + + + LG S + E
Sbjct: 79 LDPNQE---NVLEITLMDANYVMDE--TLGTATFTVSSMKVGE 116
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 3e-06
Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 10/115 (8%)
Query: 428 WYLRVSVIEAQDI---VPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCW 484
V V+ A + GD + EL + +TR NP W
Sbjct: 18 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFIST-TPDSRKRTRHFNND-----INPVW 71
Query: 485 NEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRW 539
NE F++ E+ L I++ D DE +G VS+++ +
Sbjct: 72 NETFEFILDPNQENVLEITLMDA-NYVMDETLGTATFTVSSMKVGEKKEVPFIFN 125
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 45.3 bits (106), Expect = 8e-05
Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 15/117 (12%)
Query: 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---QKWVRTRTVVDSLSPKWNEQYT 654
+ +L AT + F + D Y RTR + ++P WNE +
Sbjct: 18 HKFTVVVLRATKVTKGAFGDMLDTP-DPYVELFISTTPDSRKRTRHFNNDINPVWNETFE 76
Query: 655 WEVFDP-CTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYP 710
+ + V+ + + D + D +G +S+++ +
Sbjct: 77 FILDPNQENVLEITLMDANYV----------MDETLGTATFTVSSMKVGEKKEVPFI 123
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 5e-09
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPD 63
G LVV A +L ++ +++V F Q RT V + + NP W + D +
Sbjct: 392 GLAHLVVSNFRAEHLWGDYTT-ATDAYLKVFFGGQEFRTGVVWNNNNPRWTD--KMDFEN 448
Query: 64 IAELPYKHIEVNVFNERRSSNSRN-FLGKV 92
+ + V V++ + LG
Sbjct: 449 VLLSTGGPLRVQVWDA--DYGWDDDLLGSC 476
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 7e-06
Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 29/136 (21%)
Query: 601 EMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFD- 659
+ A L DAY +G + RT V ++ +P+W ++ +E
Sbjct: 397 VVSNFRAEHLWGDYTTA-----TDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLL 451
Query: 660 -PCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSG 718
+ V V+D + G D +G + + + L
Sbjct: 452 STGGPLRVQVWD---------ADYGWDDDLLGSCDRSPHS----GFHEVTCEL------- 491
Query: 719 VKKMGELHLAVRFSCA 734
G + + C
Sbjct: 492 --NHGRVKFSYHAKCL 505
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 6e-05
Identities = 22/122 (18%), Positives = 37/122 (30%), Gaps = 20/122 (16%)
Query: 425 PKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCW 484
L +L VS A+ + + + K G Q +T + + NP W
Sbjct: 391 RGLAHLVVSNFRAEHLWGDY-----TTATDAYLKVFFGGQEFRTGVVWNNN-----NPRW 440
Query: 485 NEDLLF-VVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLE 543
+ + F V L + V D D+++G + L
Sbjct: 441 TDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPHSG--------FHEVTCEL- 491
Query: 544 NH 545
NH
Sbjct: 492 NH 493
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 52.7 bits (125), Expect = 4e-07
Identities = 33/222 (14%), Positives = 65/222 (29%), Gaps = 24/222 (10%)
Query: 599 VLEMGILGATGLMPMKFKEGKGGSVDAYC-VAKYGQKWVRTRT---VVDSLSPKWNEQYT 654
VL++ I+ A L P K YC + + RT + + W E +
Sbjct: 12 VLKLWIIEARELPPKK---------RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFE 62
Query: 655 WEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLML 714
+ + + ++ + + +G V + ++TL YP+ +
Sbjct: 63 FNNLPAVRALRLHLYRDSDK-----KRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLP 117
Query: 715 HPSGVKKMGELHLAVRFSCANLVNMLHMYAMPLLPKMHY-----VHPLSVHQLETLRYQA 769
SG G S + K Y + +
Sbjct: 118 TGSG-GSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYKEFAEYVTNH 176
Query: 770 LNVVSSWLNRAEPPLGRESMRNWHKPIYSTLSLAFFFLLVLM 811
++ + L A G+E + + I + A FL +
Sbjct: 177 YRMLCAVLEPALNVKGKEEVASALVHILQSTGKAKDFLSDMA 218
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 50.0 bits (118), Expect = 3e-06
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 10/101 (9%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQIL-RTQVKYKDL---NPIWNEKLVFDVP 62
L + +I A L PK + E+ + + RT K + W E F+
Sbjct: 12 VLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNL 66
Query: 63 DIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNE 103
H+ + +R+ + ++G V P + L
Sbjct: 67 PAVRALRLHLYRDSDKKRKKDKA-GYVGLVTVPVATLAGRH 106
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 50.0 bits (118), Expect = 3e-06
Identities = 23/145 (15%), Positives = 40/145 (27%), Gaps = 13/145 (8%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLL 489
L++ +IEA+++ P + + + L R + + S W E
Sbjct: 13 LKLWIIEARELPPKKRYYCELCL----------DDMLYARTTSKPRSASGDTVFWGEHFE 62
Query: 490 FVVAEPFEDYLLISVED---HVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHF 546
F L D K VG V +PV+ + R +Q +
Sbjct: 63 FNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGG 122
Query: 547 GNQGESKVVTRFGSRIHLRVSLDGG 571
S G +
Sbjct: 123 SGGMGSGGGGGSGGGSGGKGKGGCP 147
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 8e-06
Identities = 15/97 (15%), Positives = 38/97 (39%), Gaps = 8/97 (8%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPI-WNEKLVFDVPDIA 65
L+V + L G + +V F Q ++V + ++E + V +
Sbjct: 22 ALIVHLKTVSEL-----RGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVAS-S 75
Query: 66 ELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKN 102
+ +E+ +FN + +++ +G R ++ +
Sbjct: 76 IDRNEVLEIQIFNYSKVFSNK-LIGTFRMVLQKVVEE 111
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 7/129 (5%)
Query: 2 GDGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDV 61
G +L+V VI A L G S+P+ E+ Q T+ LNP WN F +
Sbjct: 383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFI 442
Query: 62 PDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSH 121
D+ + + + +F +R + +FLG+ P +++ + + L
Sbjct: 443 KDLYQDV---LCLTLF-DRDQFSPDDFLGRTEIPVAKIRTEQESKGP---MTRRLLLHEV 495
Query: 122 IRGEISLKL 130
GE+ ++
Sbjct: 496 PTGEVWVRF 504
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 971 | |||
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.97 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.97 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.96 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.96 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.82 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.81 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.8 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.8 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.79 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.79 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.79 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.79 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.79 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.78 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.78 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.78 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.77 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.77 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.77 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.75 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.75 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.75 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.75 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.72 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.71 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.71 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.7 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.7 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.7 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.69 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.69 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.69 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.68 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.68 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.67 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.67 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.67 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.67 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.67 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.67 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.67 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.66 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.66 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.65 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.65 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.65 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.65 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.65 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.65 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.65 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.65 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.65 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.64 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.64 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.64 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.64 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.64 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.64 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.64 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.64 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.63 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.63 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.63 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.63 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.63 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.63 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.62 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.62 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.62 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.61 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.6 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.6 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.59 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.56 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.55 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.54 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.52 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.51 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.47 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.47 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.44 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.44 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.4 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.34 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.32 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.25 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.08 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.08 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.08 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.06 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.05 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.03 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.02 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.01 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.82 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.75 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.63 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.6 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 92.47 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 82.8 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 81.71 |
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-29 Score=272.45 Aligned_cols=228 Identities=25% Similarity=0.324 Sum_probs=187.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEC---CeEEEeeecCCCCCCCCCCCcccceeEEEeecC--CCCeEEEE
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVG---NQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEP--FEDYLLIS 503 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g---~~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~--~~~~L~v~ 503 (971)
.|+|+|++|++|+.+|.+ +.+||||+++++ .+.++|+++ ++++||.|||.|.|.+..+ ....|.|+
T Consensus 20 ~L~v~v~~a~~L~~~d~~----~~~dpyv~v~~~~~~~~~~~T~~~-----~~~~nP~wne~f~f~v~~~~~~~~~l~~~ 90 (284)
T 2r83_A 20 QLLVGIIQAAELPALDMG----GTSDPYVKVFLLPDKKKKFETKVH-----RKTLNPVFNEQFTFKVPYSELAGKTLVMA 90 (284)
T ss_dssp EEEEEEEEEECCCCCSSS----SSCCEEEEEEEETCTTSCEECCCC-----CSCSSCEEEEEEEECCCGGGCTTCEEEEE
T ss_pred EEEEEEEEeeCCCCCCCC----CCCCeEEEEEEEcCCCceEeCCcc-----cCCCCCeeCceEEEEechHHhCcCEEEEE
Confidence 689999999999999987 899999999995 368899999 8899999999999998654 34699999
Q ss_pred EEeCcCCCCCceeEEEEEeccccccccccccccceeEEcccCCCCCCCcceeeeeeeeeEEEEEccCcccccCccccccC
Q 046822 504 VEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEATLYSS 583 (971)
Q Consensus 504 V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~g~i~l~l~l~~~~~~~~~~~~~~s 583 (971)
|||.+..+++++||++.++|.++... .....|++|....+. .....|.+.+.+...
T Consensus 91 V~d~d~~~~~~~lG~~~i~l~~l~~~----~~~~~w~~L~~~~~~------~~~~~G~i~l~l~~~-------------- 146 (284)
T 2r83_A 91 VYDFDRFSKHDIIGEFKVPMNTVDFG----HVTEEWRDLQSAEKE------EQEKLGDICFSLRYV-------------- 146 (284)
T ss_dssp EEECCSSSCCCEEEEEEEEGGGCCCS----SCEEEEEECBCCSSC------CCCCCCEEEEEEEEE--------------
T ss_pred EEECCCCCCCceeEEEEEcchhcccC----CcceeEEEeeccccc------cccccccEEEEEEec--------------
Confidence 99999888999999999999998754 245789999865421 112357777765421
Q ss_pred CCcccccccCCCceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC--C---EEEeeecccCCCCCeecceeEEEee
Q 046822 584 DVKPTAKQLWKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG--Q---KWVRTRTVVDSLSPKWNEQYTWEVF 658 (971)
Q Consensus 584 d~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g--~---~~~rT~~~~~~~nP~Wne~~~~~v~ 658 (971)
+..|.|.|.|++|+||+.++. .|.+ ||||++.++ + ...+|+++++++||.|||.|.|.+.
T Consensus 147 -----------p~~~~l~v~v~~a~~L~~~d~---~~~~-dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~ 211 (284)
T 2r83_A 147 -----------PTAGKLTVVILEAKNLKKMDV---GGLS-DPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 211 (284)
T ss_dssp -----------TTTTEEEEEEEEEESCCCCST---TSCC-CEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECC
T ss_pred -----------CcCCceEEEEEEeECCCCcCC---CCCc-CeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCC
Confidence 345789999999999998654 7888 999999983 2 4589999999999999999999997
Q ss_pred CC---CcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccc------------cCCceEeeeEecee
Q 046822 659 DP---CTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTL------------ESDRVYTHSYPLLM 713 (971)
Q Consensus 659 ~~---~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l------------~~~~~~~~~~~L~~ 713 (971)
.. ...|.|+|||+|.++ +|++||++.|+++.+ ..+....+||+|..
T Consensus 212 ~~~l~~~~l~i~V~d~d~~~---------~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~ 272 (284)
T 2r83_A 212 FEQIQKVQVVVTVLDYDKIG---------KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 272 (284)
T ss_dssp TTTGGGEEEEEEEEECCSSS---------CCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred HHHhCceEEEEEEEeCCCCC---------CCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence 54 238999999999776 899999999999863 22455678999874
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=269.19 Aligned_cols=231 Identities=23% Similarity=0.348 Sum_probs=184.3
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC---eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK---QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
..+.|.|+|++|+||+.+|..|.+||||++.+++ +.++|+++++++||.|||+|.|.+... ++....|.|+|||++
T Consensus 17 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~-~~~~~~l~~~V~d~d 95 (284)
T 2r83_A 17 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS-ELAGKTLVMAVYDFD 95 (284)
T ss_dssp TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGG-GCTTCEEEEEEEECC
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechH-HhCcCEEEEEEEECC
Confidence 4678999999999999999999999999999973 478999999999999999999998643 345579999999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCC-CCeeeeEEEEEEEeeecccccccCCCCCCCCCCcccccccc
Q 046822 81 RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSL-FSHIRGEISLKLFVSTTEEVVKKGGFVSSLTPSSAFSKKNK 159 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~-~~~~~G~i~l~~~~~~~~~~~~~~~~~e~~~~~~~~~k~~~ 159 (971)
.++ +|++||++.++|.++... .....|++|.+... .....|+|.+.+.+.+
T Consensus 96 ~~~-~~~~lG~~~i~l~~l~~~--~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p------------------------- 147 (284)
T 2r83_A 96 RFS-KHDIIGEFKVPMNTVDFG--HVTEEWRDLQSAEKEEQEKLGDICFSLRYVP------------------------- 147 (284)
T ss_dssp SSS-CCCEEEEEEEEGGGCCCS--SCEEEEEECBCCSSCCCCCCCEEEEEEEEET-------------------------
T ss_pred CCC-CCceeEEEEEcchhcccC--CcceeEEEeeccccccccccccEEEEEEecC-------------------------
Confidence 986 799999999999998642 34468999987532 2235677777655421
Q ss_pred ccccCCCcccccccccCCCCCCCCCccccCccCcCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCCCCccCCC
Q 046822 160 KLQQQSPVMQVQQQHFGHQDMMSKPTHQQQSQNHVKPMEPNPGELKPVVITTAPRPVIPGARGGPTFGGGGGGGVYVNGS 239 (971)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 239 (971)
T Consensus 148 -------------------------------------------------------------------------------- 147 (284)
T 2r83_A 148 -------------------------------------------------------------------------------- 147 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccCCCCCCCCCCcccccccccccccceeEEEEEEEEeecCC---CCCCCCeEEEEEEC--C---eeeeeeeecCC
Q 046822 240 GEFSLKETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDIS---LFGGGEIVAEVKLG--N---YRGITKRVSSN 311 (971)
Q Consensus 240 ~~~~~~~~~p~~~~~~~~~~~~~~~~d~v~~~~~L~V~v~~a~~L~---~~~~~dpyV~v~~~--~---~~~kT~~~~~~ 311 (971)
..+.|.|.|++|++|+ ..|.+||||++.+. + .+++|++++++
T Consensus 148 ------------------------------~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t 197 (284)
T 2r83_A 148 ------------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNT 197 (284)
T ss_dssp ------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSC
T ss_pred ------------------------------cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCC
Confidence 0156899999999998 56789999999985 2 57899999999
Q ss_pred -CCccccEEEEeccCC--CcceEEEEEecC---CCCcccEEEEEEccccCCC--------CCCCCCCCCeEEEeecC
Q 046822 312 -HLQWDQVFAFSKDCI--QSSAAEIFVKES---DKDDFLGRIWFDLNEVPRR--------VPPDSQLAPQWYRMEDR 374 (971)
Q Consensus 312 -nP~wne~f~f~~~~~--~~~~l~v~v~D~---~~d~~lG~~~i~l~~l~~~--------~~~~~~~~~~w~~L~~~ 374 (971)
||+|||.|.|.+... ....|.|.|||. +++++||++.|++..+... ..+.. ...+||.|.+.
T Consensus 198 ~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~-~~~~W~~L~~~ 273 (284)
T 2r83_A 198 LNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRR-PIAQWHTLQVE 273 (284)
T ss_dssp SSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTS-CEEEEEECBCH
T ss_pred CCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCC-chheeeecCCc
Confidence 999999999998643 345789999987 6899999999999763210 01111 23489999865
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-29 Score=274.08 Aligned_cols=229 Identities=21% Similarity=0.293 Sum_probs=184.5
Q ss_pred EEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEE---CCeEEEeeecCCCCCCCCCCCcccceeEEEeecCC--CCeEEE
Q 046822 428 WYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQV---GNQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPF--EDYLLI 502 (971)
Q Consensus 428 ~~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~---g~~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~--~~~L~v 502 (971)
..|+|+|++|++|+.+|.+ +.+||||++++ +.+.+||+++ ++++||.|||.|.|.+.... ...|.|
T Consensus 20 ~~L~v~v~~a~~L~~~d~~----g~~dPyv~v~l~~~~~~~~kT~v~-----~~t~nP~wne~f~f~v~~~~l~~~~L~~ 90 (296)
T 1dqv_A 20 DQLVVRILQALDLPAKDSN----GFSDPYVKIYLLPDRKKKFQTKVH-----RKTLNPIFNETFQFSVPLAELAQRKLHF 90 (296)
T ss_dssp CEEEEEEEEEECCCCCSTT----SCCCEEEEEECTTSTTSCEECCCC-----CSCSSCEEEEEEEEECCGGGGSSCCCEE
T ss_pred CEEEEEEEEeECCCCcCCC----CCcCeEEEEEEEcCCCeeEeCCcc-----CCCCCCcEeeEEEEEecHHHhcCCEEEE
Confidence 3799999999999999987 89999999999 5689999999 89999999999999986443 458999
Q ss_pred EEEeCcCCCCCceeEEEEEe-ccccccccccccccceeEEcccCCCCCCCcceeeeeeeeeEEEEEccCcccccCccccc
Q 046822 503 SVEDHVGPGKDEIVGKVLIP-VSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEATLY 581 (971)
Q Consensus 503 ~V~d~d~~~~d~~iG~~~i~-L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~g~i~l~l~l~~~~~~~~~~~~~ 581 (971)
+|||+|..+++++||++.++ +.++.... .....|+.|....+ .....|.+.+.+...
T Consensus 91 ~V~d~d~~~~~~~iG~~~i~~l~~~~~~~---~~~~~w~~L~~~~~-------~~~~~G~i~vsl~y~------------ 148 (296)
T 1dqv_A 91 SVYDFDRFSRHDLIGQVVLDNLLELAEQP---PDRPLWRDILEGGS-------EKADLGELNFSLCYL------------ 148 (296)
T ss_dssp EEEECCSSSCCCEEEEEECCCTTGGGSSC---SSCCCCEECBCCSS-------CCSCCCEEEEEEEEE------------
T ss_pred EEEEcCCCCCCceEEEEEeccccccccCC---ccceeeeccccccc-------cccccceEEEEEEec------------
Confidence 99999988899999999996 44443221 23468999976542 112357777766431
Q ss_pred cCCCcccccccCCCceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC--C---EEEeeecccCCCCCeecceeEEE
Q 046822 582 SSDVKPTAKQLWKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG--Q---KWVRTRTVVDSLSPKWNEQYTWE 656 (971)
Q Consensus 582 ~sd~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g--~---~~~rT~~~~~~~nP~Wne~~~~~ 656 (971)
+..|.|.|.|++|+||+.++. .|.+ ||||++.++ + ..+||+++++++||.|||.|.|.
T Consensus 149 -------------~~~~~l~v~v~~a~~L~~~d~---~g~~-Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~ 211 (296)
T 1dqv_A 149 -------------PTAGLLTVTIIKASNLKAMDL---TGFS-DPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211 (296)
T ss_dssp -------------TTTTEEEEEEEEEESCCCCSS---SSCC-CEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCC
T ss_pred -------------cccceeEEEEEEeecCCccCC---CCCC-CcEEEEEEEeCCcCccceecceecCCCCCeECceEEEE
Confidence 345899999999999998754 7888 999999995 2 46899999999999999999999
Q ss_pred eeCC---CcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccC-------------CceEeeeEecee
Q 046822 657 VFDP---CTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLES-------------DRVYTHSYPLLM 713 (971)
Q Consensus 657 v~~~---~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~-------------~~~~~~~~~L~~ 713 (971)
+... ...|.|+|||+|.++ +|++||++.|+++.+.. ++...+|++|..
T Consensus 212 v~~~~l~~~~L~i~V~d~d~~~---------~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~ 275 (296)
T 1dqv_A 212 VAPESVENVGLSIAVVDYDCIG---------HNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVE 275 (296)
T ss_dssp CCSGGGGSCCCCCEEEECCSSS---------CCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBB
T ss_pred cCHHHccCcEEEEEEEeCCCCC---------CCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccC
Confidence 8754 237999999999776 89999999999997632 344556777664
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-29 Score=272.05 Aligned_cols=234 Identities=22% Similarity=0.343 Sum_probs=183.1
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEE---cCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~---~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
..+.|.|+|++|++|+.+|..|.+||||++.+ +.+.++|+++++++||.|||+|.|.+.. .++....|.|+|||++
T Consensus 18 ~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~l~~~~L~~~V~d~d 96 (296)
T 1dqv_A 18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL-AELAQRKLHFSVYDFD 96 (296)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCG-GGGSSCCCEEEEEECC
T ss_pred CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecH-HHhcCCEEEEEEEEcC
Confidence 46789999999999999999999999999999 4578999999999999999999999864 3344579999999999
Q ss_pred CCCCCCceeEEEEEe-CccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeecccccccCCCCCCCCCCcccccccc
Q 046822 81 RSSNSRNFLGKVRAP-CSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTTEEVVKKGGFVSSLTPSSAFSKKNK 159 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~-l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~e~~~~~~~~~k~~~ 159 (971)
.++ +|++||++.++ +..+..... ....|++|..........|+|.+.+.+.+
T Consensus 97 ~~~-~~~~iG~~~i~~l~~~~~~~~-~~~~w~~L~~~~~~~~~~G~i~vsl~y~~------------------------- 149 (296)
T 1dqv_A 97 RFS-RHDLIGQVVLDNLLELAEQPP-DRPLWRDILEGGSEKADLGELNFSLCYLP------------------------- 149 (296)
T ss_dssp SSS-CCCEEEEEECCCTTGGGSSCS-SCCCCEECBCCSSCCSCCCEEEEEEEEET-------------------------
T ss_pred CCC-CCceEEEEEeccccccccCCc-cceeeeccccccccccccceEEEEEEecc-------------------------
Confidence 987 79999999996 555543222 23479999875444445688887765521
Q ss_pred ccccCCCcccccccccCCCCCCCCCccccCccCcCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCCCCccCCC
Q 046822 160 KLQQQSPVMQVQQQHFGHQDMMSKPTHQQQSQNHVKPMEPNPGELKPVVITTAPRPVIPGARGGPTFGGGGGGGVYVNGS 239 (971)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 239 (971)
T Consensus 150 -------------------------------------------------------------------------------- 149 (296)
T 1dqv_A 150 -------------------------------------------------------------------------------- 149 (296)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccCCCCCCCCCCcccccccccccccceeEEEEEEEEeecCC---CCCCCCeEEEEEEC--C---eeeeeeeecCC
Q 046822 240 GEFSLKETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDIS---LFGGGEIVAEVKLG--N---YRGITKRVSSN 311 (971)
Q Consensus 240 ~~~~~~~~~p~~~~~~~~~~~~~~~~d~v~~~~~L~V~v~~a~~L~---~~~~~dpyV~v~~~--~---~~~kT~~~~~~ 311 (971)
..+.|.|.|++|++|+ ..|.+||||++++. + .+++|++++++
T Consensus 150 ------------------------------~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t 199 (296)
T 1dqv_A 150 ------------------------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNT 199 (296)
T ss_dssp ------------------------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSC
T ss_pred ------------------------------ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCC
Confidence 0056899999999998 56789999999996 3 57899999999
Q ss_pred -CCccccEEEEeccCC--CcceEEEEEecC---CCCcccEEEEEEccccCC---------CCCCCCCCCCeEEEeecCCC
Q 046822 312 -HLQWDQVFAFSKDCI--QSSAAEIFVKES---DKDDFLGRIWFDLNEVPR---------RVPPDSQLAPQWYRMEDRRG 376 (971)
Q Consensus 312 -nP~wne~f~f~~~~~--~~~~l~v~v~D~---~~d~~lG~~~i~l~~l~~---------~~~~~~~~~~~w~~L~~~~~ 376 (971)
||+|||.|.|.+... ....|.|.|||. +++++||.+.|++..+.. -..+ .....+|+.|....+
T Consensus 200 ~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~-~~~~~~w~~L~~~~~ 278 (296)
T 1dqv_A 200 LNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANP-RKPVEHWHQLVEEKT 278 (296)
T ss_dssp SSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSS-SSCSCSCCCCBBCC-
T ss_pred CCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCC-CCceeEeeeccCccc
Confidence 999999999988743 344678888876 789999999999987632 0001 122348888887654
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=7.7e-20 Score=174.55 Aligned_cols=123 Identities=27% Similarity=0.464 Sum_probs=109.5
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCC
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSL 674 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~ 674 (971)
...|.|+|+|++|+||++++ ..|++ ||||+++++++.+||+++++++||.|||.|.|++.++...|.|+|||+|.+
T Consensus 10 ~~~~~L~v~v~~a~~L~~~d---~~g~~-dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~ 85 (133)
T 2ep6_A 10 KDVGILQVKVLKAADLLAAD---FSGKS-DPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGD 85 (133)
T ss_dssp CCSEEEEEEEEEEESCCCSS---SSSCC-CEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETT
T ss_pred CCceEEEEEEEeeECCCCCC---CCCCc-CeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCC
Confidence 67899999999999999865 47888 999999999999999999999999999999999998888999999999977
Q ss_pred CccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEee
Q 046822 675 DKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSC 733 (971)
Q Consensus 675 ~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 733 (971)
+ +|++||++.|+|.++..+. .+||+|......+ +..|+|+|+++|.+
T Consensus 86 ~---------~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~-~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 86 K---------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYLEMDLIY 132 (133)
T ss_dssp E---------EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEEEEEEEE
T ss_pred C---------CCCeeEEEEEEHHHccCCC--ceEEEeecCCCCC-ccceEEEEEEEEEe
Confidence 5 7999999999999998766 6899998765443 34699999999864
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-19 Score=173.49 Aligned_cols=123 Identities=33% Similarity=0.546 Sum_probs=108.6
Q ss_pred CCCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCC
Q 046822 2 GDGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERR 81 (971)
Q Consensus 2 ~~~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~ 81 (971)
.+..+.|.|+|++|++|+++|..|.+||||++.++++.++|+++++++||.|||+|.|.+..+. ..|.|+|||++.
T Consensus 13 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~----~~l~~~v~d~d~ 88 (148)
T 3kwu_A 13 SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSS----DRIKVRVLDEDD 88 (148)
T ss_dssp --CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTT----CEEEEEEEECCC
T ss_pred cccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCC----CEEEEEEEECCC
Confidence 3567899999999999999999999999999999999999999999999999999999998654 789999999998
Q ss_pred C-----------CCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEee
Q 046822 82 S-----------SNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVS 133 (971)
Q Consensus 82 ~-----------~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 133 (971)
. + +|++||++.|++.++. .....||+|.+++..+..+|+|+|++.+.
T Consensus 89 ~~~~~~~~~~~~~-~~~~lG~~~i~l~~l~----~~~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 89 DIKSRVKQRFKRE-SDDFLGQTIIEVRTLS----GEMDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp SHHHHHHTTTSSC-SSEEEEEEEEEGGGCC----SEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred CccccccccccCC-CCccEEEEEEEHHHCc----CCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence 5 4 7999999999999982 22358999998876667889999999874
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.2e-19 Score=173.24 Aligned_cols=127 Identities=31% Similarity=0.466 Sum_probs=103.4
Q ss_pred CCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC------eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEE
Q 046822 3 DGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK------QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNV 76 (971)
Q Consensus 3 ~~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V 76 (971)
...+.|+|+|++|++|+.+|..|.+||||++.+.+ +.++|+++++++||.|||+|.|.+.... ..|.|+|
T Consensus 17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~----~~l~~~V 92 (153)
T 3b7y_A 17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQ----HRLLFEV 92 (153)
T ss_dssp TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTT----CEEEEEE
T ss_pred CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCC----CEEEEEE
Confidence 45689999999999999999889999999999984 5789999999999999999999988643 7899999
Q ss_pred EeCCCCCCCCceeEEEEEeCccccccCCc----ccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 77 FNERRSSNSRNFLGKVRAPCSQLCKNEGE----ATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 77 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~----~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
||++.++ +|++||++.|++.++...... ...+||+|.++...+...|+|.+++.|.+
T Consensus 93 ~d~d~~~-~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 93 FDENRLT-RDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp EECCSSS-CCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred EECCCCc-CCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence 9999987 799999999999999654332 23589999887655577899999999863
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=171.24 Aligned_cols=123 Identities=33% Similarity=0.538 Sum_probs=109.5
Q ss_pred CCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCC
Q 046822 3 DGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRS 82 (971)
Q Consensus 3 ~~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~ 82 (971)
...+.|.|+|++|++|+.+|..|.+||||++.++++.++|+++++++||.|||+|.|.+.+.. ..|.|+|||++.+
T Consensus 10 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~----~~l~i~V~d~d~~ 85 (133)
T 2ep6_A 10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIH----DVLEVTVFDEDGD 85 (133)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTT----CEEEEEEEEEETT
T ss_pred CCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCC----CEEEEEEEECCCC
Confidence 457899999999999999999999999999999999999999999999999999999998654 7899999999998
Q ss_pred CCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 83 SNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 83 ~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
+ +|++||++.+++.++... ..+||+|..+......+|+|++++.+..
T Consensus 86 ~-~~~~lG~~~i~l~~l~~~----~~~w~~L~~~~~~~~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 86 K-PPDFLGKVAIPLLSIRDG----QPNCYVLKNKDLEQAFKGVIYLEMDLIY 132 (133)
T ss_dssp E-EEEECCBCEEEGGGCCSS----CCEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred C-CCCeeEEEEEEHHHccCC----CceEEEeecCCCCCccceEEEEEEEEEe
Confidence 6 799999999999998532 1489999987655578899999998864
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=168.65 Aligned_cols=130 Identities=23% Similarity=0.330 Sum_probs=106.0
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCC
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLD 675 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~ 675 (971)
..|.|+|+|++|+||++++. .|++ ||||++.++++.+||+++.+++||.|||.|.|.+.++...|.|+|||+|.+.
T Consensus 15 ~~~~L~V~v~~a~~L~~~d~---~g~~-dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~ 90 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAKDK---TGSS-DPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDI 90 (148)
T ss_dssp CCEEEEEEEEEEESCCCCST---TSCC-CEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSH
T ss_pred cccEEEEEEEeeeCCCCCCC---CCCc-CeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCc
Confidence 36999999999999998654 7888 9999999999999999999999999999999999988889999999999640
Q ss_pred cc--ccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 676 KN--IINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 676 ~~--~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
.. ......++|++||++.|+|.++. ....+||+|......+ +..|+|+|+++|.
T Consensus 91 ~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~~~~-~~~G~i~l~l~~e 146 (148)
T 3kwu_A 91 KSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRTDKS-AVSGAIRLHISVE 146 (148)
T ss_dssp HHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSSTTC-CCCCEEEEEEEEE
T ss_pred cccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCCCCC-CCceEEEEEEEEE
Confidence 00 00000138999999999999994 3458999998543322 2459999999986
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=166.49 Aligned_cols=130 Identities=22% Similarity=0.270 Sum_probs=109.3
Q ss_pred CCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCC
Q 046822 3 DGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRS 82 (971)
Q Consensus 3 ~~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~ 82 (971)
...+.|.|+|++|++|+.++. |.+||||++.+++++++|+++++++||+|||+|.|.+..+.......|.|+|||++.+
T Consensus 4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~ 82 (140)
T 2dmh_A 4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETI 82 (140)
T ss_dssp CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCS
T ss_pred CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCC
Confidence 457899999999999999998 9999999999999999999999999999999999998754322348999999999998
Q ss_pred CCCCceeEEEEEeCccccccCCcccceEEE---eEeCCCCCeeeeEEEEEEEeeeccc
Q 046822 83 SNSRNFLGKVRAPCSQLCKNEGEATAQLYT---LEKRSLFSHIRGEISLKLFVSTTEE 137 (971)
Q Consensus 83 ~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~---L~~~~~~~~~~G~i~l~~~~~~~~~ 137 (971)
+ +|++||++.|++.++... .....||+ |..... ....|+|.+++.|.+.+.
T Consensus 83 ~-~~~~lG~~~i~l~~l~~~--~~~~~w~~l~~l~~~~~-~~~~G~l~l~~~~~p~~~ 136 (140)
T 2dmh_A 83 G-QNKLIGTATVALKDLTGD--QSRSLPYKLISLLNEKG-QDTGATIDLVIGYDPPSG 136 (140)
T ss_dssp S-SCCCCEEEEEEGGGTCSS--SCEEEEEEEEEEECTTC-CEEEEEEEEEEEECCCBS
T ss_pred C-CCceEEEEEEEHHHhccC--CCceeEEeeeeccCCCC-CCCCCEEEEEEEEECCCC
Confidence 6 789999999999998543 23357888 554432 357899999999987554
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-19 Score=173.31 Aligned_cols=118 Identities=21% Similarity=0.296 Sum_probs=101.3
Q ss_pred CCCeEEEEEEEEeeCCCCCCC----------CCCCCcEEEEEEcCeE-EEeecccCCCCCeeeeeeEEecCCCCCCCcce
Q 046822 3 DGKEKLVVEVIAAHNLMPKDG----------EGSSSPFVEVEFEKQI-LRTQVKYKDLNPIWNEKLVFDVPDIAELPYKH 71 (971)
Q Consensus 3 ~~~~~L~V~V~~a~~L~~~d~----------~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~ 71 (971)
...|.|+|+|++|++|+++|. .|.+||||+|.+++++ .+|+++++|+||.|||+|.|.+.+. ..
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~-----~~ 100 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG-----GH 100 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-----CE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCCC-----CE
Confidence 446899999999999999883 3679999999999875 7999999999999999999998642 68
Q ss_pred EEEEEEeCCCCCCCCceeEEEEEeCcccccc--CCcccceEEEeEeCCCCCeeeeEEEEEEEee
Q 046822 72 IEVNVFNERRSSNSRNFLGKVRAPCSQLCKN--EGEATAQLYTLEKRSLFSHIRGEISLKLFVS 133 (971)
Q Consensus 72 L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 133 (971)
|.|+|||++.++ +|++||++.|++.++... .......||+|++ +|.|++++.+.
T Consensus 101 L~~~V~D~d~~~-~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~-------~G~i~l~l~~~ 156 (157)
T 2fk9_A 101 LELAVFHETPLG-YDHFVANCTLQFQELLRTTGASDTFEGWVDLEP-------EGKVFVVITLT 156 (157)
T ss_dssp EEEEEEECCSSS-SCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS-------SCEEEEEEEEC
T ss_pred EEEEEEECCCCC-CCCEEEEEEEEHHHhhcccCCCCcccEEEECCC-------CcEEEEEEEEE
Confidence 999999999987 799999999999999754 3345578999964 59999998874
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.2e-19 Score=175.97 Aligned_cols=128 Identities=33% Similarity=0.469 Sum_probs=104.7
Q ss_pred CCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC------eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEE
Q 046822 3 DGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK------QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNV 76 (971)
Q Consensus 3 ~~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V 76 (971)
...+.|+|+|++|++|+.++..|.+||||++.+.+ +.++|+++++++||.|||+|.|.+.... ..|.|.|
T Consensus 5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~----~~L~~~V 80 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQR----HRILFEV 80 (176)
T ss_dssp TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTT----CEEEEEE
T ss_pred CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCC----CEEEEEE
Confidence 56799999999999999999999999999999985 6789999999999999999999998543 7899999
Q ss_pred EeCCCCCCCCceeEEEEEeCccccccCCc----ccceEEEeEeCCCCCeeeeEEEEEEEeeec
Q 046822 77 FNERRSSNSRNFLGKVRAPCSQLCKNEGE----ATAQLYTLEKRSLFSHIRGEISLKLFVSTT 135 (971)
Q Consensus 77 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~----~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~ 135 (971)
||++.++ +|+|||++.|+|..+...... ...+||+|.++..+++.+|+|.|++.|.+.
T Consensus 81 ~d~d~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 81 FDENRLT-RDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp EECC-----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred EECCCCC-CCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 9999987 799999999999999754322 223899999887667789999999999865
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=6.2e-19 Score=168.97 Aligned_cols=126 Identities=19% Similarity=0.332 Sum_probs=110.4
Q ss_pred CCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeeccc-CCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCC
Q 046822 3 DGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKY-KDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERR 81 (971)
Q Consensus 3 ~~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~ 81 (971)
...+.|.|+|++|++|+.++..|.+||||++.++++.++|++++ +++||.|||+|.|.+.+.. ..|.|+|||++.
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~----~~l~~~V~d~~~ 82 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGT----TELKAKIFDKDV 82 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSC----CEEEEEECCSSS
T ss_pred CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCC----CEEEEEEEECCC
Confidence 56789999999999999999899999999999999999999998 8999999999999998633 799999999999
Q ss_pred CCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeeccc
Q 046822 82 SSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTTEE 137 (971)
Q Consensus 82 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~ 137 (971)
++ +|++||++.|++.++...+ .....||+|.. ..+..|+|.+++.|.+...
T Consensus 83 ~~-~d~~lG~~~i~l~~l~~~~-~~~~~w~~L~~---~~~~~G~i~l~l~~~p~~~ 133 (136)
T 1wfj_A 83 GT-EDDAVGEATIPLEPVFVEG-SIPPTAYNVVK---DEEYKGEIWVALSFKPSGP 133 (136)
T ss_dssp CT-TTCCSEEEEEESHHHHHHS-EEEEEEEEEEE---TTEEEEEEEEEEEEEECCS
T ss_pred CC-CCceEEEEEEEHHHhccCC-CCCcEEEEeec---CCccCEEEEEEEEEEeCCC
Confidence 86 7999999999999995433 33458999983 2468899999999987553
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-19 Score=171.46 Aligned_cols=119 Identities=21% Similarity=0.302 Sum_probs=102.0
Q ss_pred CceeEEEEEEEeeeCCCCCCccC-------CCCcccCcEEEEEECCEE-EeeecccCCCCCeecceeEEEeeCCCcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKE-------GKGGSVDAYCVAKYGQKW-VRTRTVVDSLSPKWNEQYTWEVFDPCTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~-------~~g~s~dpy~~~~~g~~~-~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i 666 (971)
...|.|+|+|++|+||+++|... +.|.+ ||||++.++++. .||+++++|+||.|||.|.|.+.+. ..|.|
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~s-DPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~-~~L~~ 103 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLL-DPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG-GHLEL 103 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCC-CEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCC-CeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCCC-CEEEE
Confidence 56799999999999999876310 13678 999999998766 6999999999999999999999763 58999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCC----ceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESD----RVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~----~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
+|||+|.++ +|++||++.|+|.++..+ .....||+|. +.|+|+|.++|.
T Consensus 104 ~V~D~d~~~---------~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~--------~~G~i~l~l~~~ 156 (157)
T 2fk9_A 104 AVFHETPLG---------YDHFVANCTLQFQELLRTTGASDTFEGWVDLE--------PEGKVFVVITLT 156 (157)
T ss_dssp EEEECCSSS---------SCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB--------SSCEEEEEEEEC
T ss_pred EEEECCCCC---------CCCEEEEEEEEHHHhhcccCCCCcccEEEECC--------CCcEEEEEEEEE
Confidence 999999876 899999999999998744 6779999995 149999999885
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=8.5e-19 Score=168.05 Aligned_cols=122 Identities=21% Similarity=0.358 Sum_probs=107.3
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeeccc-CCCCCeecceeEEEeeCCCcEEEEEEEeCCC
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVV-DSLSPKWNEQYTWEVFDPCTVITVGVFDNCS 673 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~-~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~ 673 (971)
...|.|.|+|++|+||+.++. .|++ ||||+++++++.+||++++ +++||.|||.|.|.+.+....|+|+|||++.
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~---~g~~-dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~ 82 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADF---LNNM-DPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDV 82 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCS---SCSS-CCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSS
T ss_pred CCcEEEEEEEEeccCCCCccc---CCCc-CceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCC
Confidence 567999999999999998654 6888 9999999998899999998 8999999999999999877899999999997
Q ss_pred CCccccCCCCCCCceeEEEEEEcccc-cCCceEeeeEeceecCCCCcccceEEEEEEEEee
Q 046822 674 LDKNIINNSGGRDSRIGKVRIRLSTL-ESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSC 733 (971)
Q Consensus 674 ~~~~~~~~~~~~d~~iG~~~i~l~~l-~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 733 (971)
++ +|++||++.|+|.++ ..+.....||+|. . +.+..|+|+|+++|..
T Consensus 83 ~~---------~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~---~~~~~G~i~l~l~~~p 130 (136)
T 1wfj_A 83 GT---------EDDAVGEATIPLEPVFVEGSIPPTAYNVV-K---DEEYKGEIWVALSFKP 130 (136)
T ss_dssp CT---------TTCCSEEEEEESHHHHHHSEEEEEEEEEE-E---TTEEEEEEEEEEEEEE
T ss_pred CC---------CCceEEEEEEEHHHhccCCCCCcEEEEee-c---CCccCEEEEEEEEEEe
Confidence 75 899999999999999 5565567899998 2 2245699999999974
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=165.76 Aligned_cols=125 Identities=20% Similarity=0.328 Sum_probs=106.1
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCC----CcEEEEEEEe
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDP----CTVITVGVFD 670 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~----~~~l~i~V~D 670 (971)
...|.|.|+|++|+||+.++ . |++ ||||+++++++.+||+++++++||.|||.|.|.+..+ ...|.|+|||
T Consensus 4 ~~~g~L~v~v~~a~~L~~~~---~-g~~-dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d 78 (140)
T 2dmh_A 4 GSSGMLRVIVESASNIPKTK---F-GKP-DPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKD 78 (140)
T ss_dssp CBCCEEEEEEEEEESCCCCS---S-SCC-CEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEE
T ss_pred CCCcEEEEEEEEeeCCCCCC---C-CCC-CeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEE
Confidence 34689999999999999864 3 788 9999999999999999999999999999999999753 5699999999
Q ss_pred CCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee-cCCCCcccceEEEEEEEEee
Q 046822 671 NCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM-LHPSGVKKMGELHLAVRFSC 733 (971)
Q Consensus 671 ~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~-~~~~g~~~~G~i~l~~~f~~ 733 (971)
+|.++ +|++||++.|+|.+|..+.....||+|.. .+..+.+..|+|+|+++|..
T Consensus 79 ~d~~~---------~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p 133 (140)
T 2dmh_A 79 FETIG---------QNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDP 133 (140)
T ss_dssp TTCSS---------SCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECC
T ss_pred CCCCC---------CCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEEC
Confidence 99775 89999999999999988877788988322 22334345699999999874
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=9e-19 Score=167.74 Aligned_cols=122 Identities=20% Similarity=0.305 Sum_probs=104.3
Q ss_pred CCCCCeEEEEEEEEeeCCCCCCCCCC-----------CCcEEEEEEcCeE-EEeecccCCCCCeeeeeeEEecCCCCCCC
Q 046822 1 MGDGKEKLVVEVIAAHNLMPKDGEGS-----------SSPFVEVEFEKQI-LRTQVKYKDLNPIWNEKLVFDVPDIAELP 68 (971)
Q Consensus 1 ~~~~~~~L~V~V~~a~~L~~~d~~g~-----------~dPyv~v~~~~~~-~~T~~~~~t~nP~wne~f~f~v~~~~~l~ 68 (971)
|.+..+.|.|+|++|+||+++|..+. +||||++.++++. .+|+++++|+||.|||+|.|.+...
T Consensus 1 m~~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~---- 76 (136)
T 1gmi_A 1 MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---- 76 (136)
T ss_dssp CCCEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE----
T ss_pred CcccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC----
Confidence 56778999999999999998885444 9999999998875 7999999999999999999998643
Q ss_pred cceEEEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeec
Q 046822 69 YKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTT 135 (971)
Q Consensus 69 ~~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~ 135 (971)
..|.|+|||++.++ +|++||++.|++.++...+......|++|++ +|+|++++.|.+.
T Consensus 77 -~~L~~~V~d~d~~~-~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~-------~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 77 -RKIELAVFHDAPIG-YDDFVANCTIQFEELLQNGSRHFEDWIDLEP-------EGKVYVIIDLSGS 134 (136)
T ss_dssp -CEEEEEEEECCSSS-SCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-------SCEEEEEEEEEEE
T ss_pred -CEEEEEEEeCCCCC-CCCEEEEEEEEHHHhcccCCCCccEEEEcCC-------CeEEEEEEEEEec
Confidence 68999999999987 7999999999999997644444468999864 5999999988653
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-18 Score=166.96 Aligned_cols=124 Identities=25% Similarity=0.404 Sum_probs=100.7
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC------EEEeeecccCCCCCeecceeEEEeeCCCcEEEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ------KWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGV 668 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~------~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V 668 (971)
...|.|+|+|++|+||+.++. .|++ ||||++++++ ..+||+++++++||.|||.|.|.+......|.|+|
T Consensus 17 ~~~~~L~V~v~~a~~L~~~d~---~g~~-dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V 92 (153)
T 3b7y_A 17 ENSRIVRVRVIAGIGLAKKDI---LGAS-DPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEV 92 (153)
T ss_dssp TTCEEEEEEEEEEESCC----------C-CEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEE
T ss_pred CCccEEEEEEEEeeCCCCCCC---CCCC-CcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEE
Confidence 567999999999999998653 6888 9999999963 57899999999999999999999998878999999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCCce------EeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRV------YTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
||++.++ +|++||++.|+|.++..+.. ...||+|......+ +..|+|+|++.|.
T Consensus 93 ~d~d~~~---------~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~l~~~ 152 (153)
T 3b7y_A 93 FDENRLT---------RDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYL 152 (153)
T ss_dssp EECCSSS---------CCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTC-CCCSEEEEEEEEC
T ss_pred EECCCCc---------CCCeeEEEEEEHHHcccCCCcccccccccccccccccCCC-CcceEEEEEEEEe
Confidence 9999775 89999999999999865542 24899997654323 3469999999885
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-18 Score=162.60 Aligned_cols=125 Identities=26% Similarity=0.358 Sum_probs=104.6
Q ss_pred CCCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC--eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 2 GDGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK--QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 2 ~~~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~--~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
|.+...|+|+|++|++|+++|..|.+||||++.+++ +.++|+++++|+||.|||+|.|.+... ..|.|+|||+
T Consensus 1 g~~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-----~~l~~~v~d~ 75 (132)
T 3pyc_A 1 GSEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT-----DSITISVWNH 75 (132)
T ss_dssp CCSEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT-----CCEEEEEEEG
T ss_pred CCCeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC-----CEEEEEEEEC
Confidence 456789999999999999999999999999999975 789999999999999999999998754 3599999999
Q ss_pred CCCCCC--CceeEEEEEeCccccccCCcccceEEEeEeC--CCCCeeeeEEEEEEEe
Q 046822 80 RRSSNS--RNFLGKVRAPCSQLCKNEGEATAQLYTLEKR--SLFSHIRGEISLKLFV 132 (971)
Q Consensus 80 ~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~--~~~~~~~G~i~l~~~~ 132 (971)
+.++.. |+|||++.|++..+....... .+|++|..+ .......|+|.+++..
T Consensus 76 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~-~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 76 KKIHKKQGAGFLGCVRLLSNAISRLKDTG-YQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp GGTTSSTTTTEEEEEEECHHHHHHHTTSC-CEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred CCCCCCCCCCceEEEEEeHHHhhcccccC-cEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 998621 899999999999884333322 378999876 3334568999999864
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=7.1e-18 Score=161.48 Aligned_cols=119 Identities=20% Similarity=0.313 Sum_probs=99.8
Q ss_pred ceeEEEEEEEeeeCCCCCCccCC--------CCcccCcEEEEEECCEE-EeeecccCCCCCeecceeEEEeeCCCcEEEE
Q 046822 596 HIGVLEMGILGATGLMPMKFKEG--------KGGSVDAYCVAKYGQKW-VRTRTVVDSLSPKWNEQYTWEVFDPCTVITV 666 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~--------~g~s~dpy~~~~~g~~~-~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i 666 (971)
..|.|+|+|++|+||++++.... .+.+ ||||++.+++.. .+|+++.+++||.|||.|.|.+.+. ..|.|
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~-DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~ 81 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLL-DPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIEL 81 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCC-CEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCc-CcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEE
Confidence 35899999999999998763100 1237 999999998765 6999999999999999999999876 79999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCC--ceEeeeEeceecCCCCcccceEEEEEEEEee
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESD--RVYTHSYPLLMLHPSGVKKMGELHLAVRFSC 733 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 733 (971)
+|||+|.++ +|++||++.|+|+++..+ .....|++|. +.|+|+|.++|..
T Consensus 82 ~V~d~d~~~---------~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~i~l~l~~~~ 133 (136)
T 1gmi_A 82 AVFHDAPIG---------YDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKVYVIIDLSG 133 (136)
T ss_dssp EEEECCSSS---------SCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEEEEEEEEEE
T ss_pred EEEeCCCCC---------CCCEEEEEEEEHHHhcccCCCCccEEEEcC--------CCeEEEEEEEEEe
Confidence 999999775 899999999999998763 3457899885 2499999999874
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=167.83 Aligned_cols=125 Identities=26% Similarity=0.409 Sum_probs=100.4
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC------EEEeeecccCCCCCeecceeEEEeeCCCcEEEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ------KWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGV 668 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~------~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V 668 (971)
...|.|+|+|++|+||+.++. .|++ ||||++.+++ ..+||+++++++||.|||.|.|.+......|.|+|
T Consensus 5 ~~~g~L~V~v~~a~~L~~~d~---~g~~-DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V 80 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKKDI---LGAS-DPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEV 80 (176)
T ss_dssp TTCEEEEEEEEEEESCC---C---CCCC-CEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEE
T ss_pred CCcEEEEEEEEEeeCCCCcCC---CCCc-CcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEE
Confidence 567999999999999998654 7888 9999999964 67999999999999999999999998778999999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCCceE-e-----eeEeceecCCCCcccceEEEEEEEEee
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVY-T-----HSYPLLMLHPSGVKKMGELHLAVRFSC 733 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~-~-----~~~~L~~~~~~g~~~~G~i~l~~~f~~ 733 (971)
||++.++ +|++||++.|+|.++..+... . .||+|......+ +..|+|+|+++|..
T Consensus 81 ~d~d~~~---------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~l~~~p 141 (176)
T 3m7f_B 81 FDENRLT---------RDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYLP 141 (176)
T ss_dssp EECC-------------CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTC-CCCSEEEEEEEECC
T ss_pred EECCCCC---------CCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCC-ccCEEEEEEEEEEe
Confidence 9999775 899999999999999765432 1 799998654433 34599999999974
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-18 Score=160.17 Aligned_cols=117 Identities=16% Similarity=0.238 Sum_probs=98.5
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC---EEEeeecccCCCCCeecceeEEEeeC-CCcEEEEEEEeCC
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ---KWVRTRTVVDSLSPKWNEQYTWEVFD-PCTVITVGVFDNC 672 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~---~~~rT~~~~~~~nP~Wne~~~~~v~~-~~~~l~i~V~D~~ 672 (971)
.|.|.|+|++|+||+.++..|..|++ ||||++++++ ..+||+++++++||.|||.|.|.+.. ....|.|+|||++
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~-dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d 80 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTP-DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN 80 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCC-CEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECC
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCC-CCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECC
Confidence 48999999999999985433446788 9999999974 78999999999999999999999964 4559999999998
Q ss_pred CCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEE
Q 046822 673 SLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVR 730 (971)
Q Consensus 673 ~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 730 (971)
.+ +|++||++.|+|+++..+.....||+|.. ...|.|+++++
T Consensus 81 ~~----------~~~~iG~~~i~l~~l~~~~~~~~~~~L~~------~~~g~i~~~le 122 (126)
T 1rlw_A 81 YV----------MDETLGTATFTVSSMKVGEKKEVPFIFNQ------VTEMVLEMSLE 122 (126)
T ss_dssp SS----------CCEEEEEEEEEGGGSCTTCEEEEEEEETT------TEEEEEEEEEE
T ss_pred CC----------CCceeEEEEEEHHHccCCCcEEEEEEcCC------CceEEEEEEEE
Confidence 54 58999999999999999988899999962 22366666664
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=165.35 Aligned_cols=126 Identities=21% Similarity=0.211 Sum_probs=105.2
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSS 83 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~ 83 (971)
..+.|.|+|++|++|+.++..+.+||||+|.++++.++|+++++|+||+|||+|.|.+.. . ..|.|+|||++.++
T Consensus 34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~-~----~~L~~~V~D~d~~~ 108 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-V----SKLHFRVWSHQTLK 108 (173)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-T----CEEEEEEEECCSSS
T ss_pred CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC-C----CEEEEEEEECCCCC
Confidence 568899999999999944445559999999999999999999999999999999999853 3 79999999999987
Q ss_pred CCCceeEEEEEeCccccccCC-c--ccceEEEeEeCCCCCeeeeEEEEEEEeeec
Q 046822 84 NSRNFLGKVRAPCSQLCKNEG-E--ATAQLYTLEKRSLFSHIRGEISLKLFVSTT 135 (971)
Q Consensus 84 ~~d~~lG~~~i~l~~l~~~~~-~--~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~ 135 (971)
+|++||++.|++.++..... . ....|++|..........|+|.+.+.+...
T Consensus 109 -~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~ 162 (173)
T 2nq3_A 109 -SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL 162 (173)
T ss_dssp -CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred -CCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence 79999999999999864322 1 125799999875445688999999988754
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=155.34 Aligned_cols=117 Identities=21% Similarity=0.316 Sum_probs=98.3
Q ss_pred CCeEEEEEEEEeeCCCCC---CCCCCCCcEEEEEEcC---eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPK---DGEGSSSPFVEVEFEK---QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVF 77 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~---d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~ 77 (971)
+.+.|.|+|++|++|+.+ +..|.+||||++.+++ +.++|+++++++||.|||+|.|.+.... ...|.|+||
T Consensus 1 S~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~---~~~l~i~V~ 77 (126)
T 1rlw_A 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ---ENVLEITLM 77 (126)
T ss_dssp CCEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTS---CCEEEEEEE
T ss_pred CCcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCC---CCEEEEEEE
Confidence 468999999999999984 5578999999999985 7899999999999999999999986544 378999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
|++.+ +|++||++.++|.++.. +.....||+|.+ ...|+|.+++..
T Consensus 78 d~d~~--~~~~iG~~~i~l~~l~~--~~~~~~~~~L~~-----~~~g~i~~~le~ 123 (126)
T 1rlw_A 78 DANYV--MDETLGTATFTVSSMKV--GEKKEVPFIFNQ-----VTEMVLEMSLEV 123 (126)
T ss_dssp ECCSS--CCEEEEEEEEEGGGSCT--TCEEEEEEEETT-----TEEEEEEEEEEC
T ss_pred ECCCC--CCceeEEEEEEHHHccC--CCcEEEEEEcCC-----CceEEEEEEEEe
Confidence 99986 48999999999999853 334468999975 245777777654
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-17 Score=155.45 Aligned_cols=107 Identities=21% Similarity=0.481 Sum_probs=89.2
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEE-----cCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+.++..|.+||||++.+ +.+.++|+++++|+||.|||+|.|.+...+++....|.|+|||
T Consensus 16 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d 95 (129)
T 2bwq_A 16 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD 95 (129)
T ss_dssp TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEE
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEE
Confidence 35789999999999999999999999999999 3568999999999999999999999654444456899999999
Q ss_pred CCCCCCC--CceeEEEEEeCccccccCCcccceEEEeE
Q 046822 79 ERRSSNS--RNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 79 ~~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
++.++ + +++||++.+++.++...+ ..+||+|+
T Consensus 96 ~d~~~-~~~~~~lG~~~i~l~~l~~~~---~~~W~~Lq 129 (129)
T 2bwq_A 96 QARVR-EEESEFLGEILIELETALLDD---EPHWYKLQ 129 (129)
T ss_dssp C--------CEEEEEEEEEGGGCCCSS---CEEEEECC
T ss_pred CCcCc-CcCCceeEEEEEEccccCCCc---CCccEECc
Confidence 99986 5 899999999999986533 56899984
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.9e-17 Score=154.25 Aligned_cols=124 Identities=21% Similarity=0.288 Sum_probs=98.7
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC--EEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCC
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ--KWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSL 674 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~--~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~ 674 (971)
...|+|+|++|++|++++. .|++ ||||++.+++ +.++|+++++++||.|||.|.|.+.++.. |.|+|||+|.+
T Consensus 4 ~~~L~V~v~~a~~L~~~d~---~g~s-Dpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~-l~~~v~d~d~~ 78 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKKDF---FRLP-DPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTDS-ITISVWNHKKI 78 (132)
T ss_dssp EEEEEEEEEEEESCCCCST---TCCC-CEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTCC-EEEEEEEGGGT
T ss_pred eEEEEEEEEEeECCCCCCC---CCCc-CeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCCE-EEEEEEECCCC
Confidence 4679999999999998654 7889 9999999964 78999999999999999999999987654 99999999976
Q ss_pred CccccCCCCCCCceeEEEEEEcccc-cCCceEeeeEeceecCCCC-cccceEEEEEEEE
Q 046822 675 DKNIINNSGGRDSRIGKVRIRLSTL-ESDRVYTHSYPLLMLHPSG-VKKMGELHLAVRF 731 (971)
Q Consensus 675 ~~~~~~~~~~~d~~iG~~~i~l~~l-~~~~~~~~~~~L~~~~~~g-~~~~G~i~l~~~f 731 (971)
+ ....|++||++.|++..| ........|++|....+.+ .+..|+|++++..
T Consensus 79 ~------~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 79 H------KKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp T------SSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred C------CCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 5 112389999999999988 2222224789998653322 2346999998853
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-17 Score=162.02 Aligned_cols=108 Identities=19% Similarity=0.286 Sum_probs=92.9
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC---e---EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK---Q---ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVF 77 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~---~---~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~ 77 (971)
..+.|.|+|++|+||+++|..|.+||||++.+.+ . +++|+++++|+||+|||+|.|.+... ++....|.|+||
T Consensus 41 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~-~l~~~~L~~~V~ 119 (155)
T 2z0u_A 41 KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYP-ALHQKTLRVDVC 119 (155)
T ss_dssp TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHH-HHHHCEEEEEEE
T ss_pred CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHH-HhCcCEEEEEEE
Confidence 4578999999999999999999999999999975 2 79999999999999999999997642 233478999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
|+++++ ++++||++.|+|.++... .....+||+|.
T Consensus 120 d~d~~~-~~d~iG~~~i~l~~l~~~-~~~~~~W~~L~ 154 (155)
T 2z0u_A 120 TTDRSH-LEECLGGAQISLAEVCRS-GERSTRWYNLL 154 (155)
T ss_dssp EECTTS-CEEEEEEEEEECTTSCTT-CCCEEEEEEEB
T ss_pred ECCCCC-CCcEEEEEEEEHHHccCC-CCccccceEcc
Confidence 999987 799999999999998532 23446899996
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.8e-17 Score=156.20 Aligned_cols=112 Identities=28% Similarity=0.421 Sum_probs=95.8
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc---CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE---KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
..+.|.|+|++|++|+.++..|.+||||++.+. .+.++|+++++++||.|||+|.|.+...+.+....|.|+|||++
T Consensus 24 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d 103 (141)
T 2d8k_A 24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYD 103 (141)
T ss_dssp SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECC
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECC
Confidence 467899999999999999999999999999995 45899999999999999999999964333334478999999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCC
Q 046822 81 RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSL 118 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~ 118 (971)
.++ ++++||++.|++.++... .....||+|.+.+.
T Consensus 104 ~~~-~~~~iG~~~i~l~~l~~~--~~~~~W~~L~~~~~ 138 (141)
T 2d8k_A 104 RFS-RNDPIGEVSIPLNKVDLT--QMQTFWKDLKPSGP 138 (141)
T ss_dssp SSS-SCEEEEEEEEETTTSCTT--SCEEEEECCEECCC
T ss_pred CCC-CCcEEEEEEEEhhhhcCC--CCccEEEECcCCCC
Confidence 986 799999999999999643 24468999998754
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=159.03 Aligned_cols=123 Identities=16% Similarity=0.207 Sum_probs=100.5
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCC
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSL 674 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~ 674 (971)
...+.|+|+|++|++|+..+ + .+++ ||||++.++++.+||+++++++||.|||.|.|.+. +...|.|+|||+|.+
T Consensus 33 ~~~~~L~V~V~~A~~L~~~~--~-~~~s-DPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~ 107 (173)
T 2nq3_A 33 TMKSQLQITVISAKLKENKK--N-WFGP-SPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTL 107 (173)
T ss_dssp SCCEEEEEEEEEEEECCCC-----CCCC-CEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSS
T ss_pred CCceEEEEEEEEeECCCCcc--c-CCCC-CeEEEEEECCEEeEccccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCC
Confidence 45689999999999998432 2 3457 99999999999999999999999999999999985 577999999999977
Q ss_pred CccccCCCCCCCceeEEEEEEcccccCC---ce--EeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 675 DKNIINNSGGRDSRIGKVRIRLSTLESD---RV--YTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 675 ~~~~~~~~~~~d~~iG~~~i~l~~l~~~---~~--~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
+ +|++||++.|+|.++..+ .. ...|++|..... +.+..|+|.+.+.+-
T Consensus 108 ~---------~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~-~~~~~G~L~v~l~~l 160 (173)
T 2nq3_A 108 K---------SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKE-PTETIGDLSICLDGL 160 (173)
T ss_dssp S---------CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSC-TTSEEEEEEEEEESE
T ss_pred C---------CCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCC-CCcccEEEEEEEeee
Confidence 6 899999999999998532 11 256999987532 334569999988764
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.1e-17 Score=153.89 Aligned_cols=109 Identities=20% Similarity=0.404 Sum_probs=91.1
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEE-----cCeEEEeecccCCCCCeeeeeeEEe-cCCCCCCCcceEEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVFD-VPDIAELPYKHIEVNVF 77 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~wne~f~f~-v~~~~~l~~~~L~i~V~ 77 (971)
..+.|.|+|++|+||+. +..|.+||||++.+ ....++|+++++|+||.|||+|.|. +.. .++....|.|+||
T Consensus 18 ~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~-~~l~~~~L~~~V~ 95 (134)
T 2b3r_A 18 RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSK-ETLRQRELQLSVL 95 (134)
T ss_dssp ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCH-HHHTTCEEEEEEE
T ss_pred cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCH-HHhCcCEEEEEEE
Confidence 35789999999999997 77889999999999 3457999999999999999999999 653 2233479999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
|++.++ ++++||++.|+|.++... .....||+|.+++
T Consensus 96 d~d~~~-~~~~lG~~~i~l~~l~~~--~~~~~W~~L~~~~ 132 (134)
T 2b3r_A 96 SAESLR-ENFFLGGITLPLKDFNLS--KETVKWYQLTAAT 132 (134)
T ss_dssp ECCSSS-CCEEEEEEEEEGGGSCTT--SCEEEEEECBC--
T ss_pred ECCCCC-CCcEEEEEEEEhhhccCC--CCcceeEECCCcc
Confidence 999987 789999999999999642 3346899998653
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-16 Score=150.99 Aligned_cols=106 Identities=25% Similarity=0.364 Sum_probs=92.7
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC---CEEEeeecccCCCCCeecceeEEEeeC----CCcEEEEEE
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---QKWVRTRTVVDSLSPKWNEQYTWEVFD----PCTVITVGV 668 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g---~~~~rT~~~~~~~nP~Wne~~~~~v~~----~~~~l~i~V 668 (971)
..+.|.|+|++|+||+.++. .|++ ||||++.+. ...+||+++++++||.|||.|.|.+.. ....|.|+|
T Consensus 24 ~~~~L~v~v~~a~~L~~~d~---~g~~-dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V 99 (141)
T 2d8k_A 24 QESTLTVKIMKAQELPAKDF---SGTS-DPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQV 99 (141)
T ss_dssp SSCCEEEEEEEEESCCCCSS---SSCC-CEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEE
T ss_pred CCCEEEEEEEEeECCCCCCC---CCCC-CcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEE
Confidence 45789999999999998654 7888 999999993 468999999999999999999998643 346899999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceec
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLML 714 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~ 714 (971)
||++.++ +|++||++.|+|.++..+.....||+|...
T Consensus 100 ~d~d~~~---------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 136 (141)
T 2d8k_A 100 LDYDRFS---------RNDPIGEVSIPLNKVDLTQMQTFWKDLKPS 136 (141)
T ss_dssp EECCSSS---------SCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred EECCCCC---------CCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence 9999775 899999999999999888778899999854
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=155.45 Aligned_cols=106 Identities=24% Similarity=0.328 Sum_probs=93.2
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE---CCEEEeeecccCCCCCeecceeEEEeeC---CCcEEEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY---GQKWVRTRTVVDSLSPKWNEQYTWEVFD---PCTVITVGV 668 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~---g~~~~rT~~~~~~~nP~Wne~~~~~v~~---~~~~l~i~V 668 (971)
+..+.|.|+|++|+||+.++. .|.+ ||||++.+ +.+.+||+++++++||.|||.|.|.+.. ....|.|+|
T Consensus 39 ~~~~~L~V~v~~a~~L~~~d~---~g~~-dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V 114 (152)
T 1rsy_A 39 FQNNQLLVGIIQAAELPALDM---GGTS-DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAV 114 (152)
T ss_dssp TTTTEEEEEEEEEESCCCCST---TSCC-CEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEE
T ss_pred CCCCEEEEEEEEeECCCCccC---CCCc-CeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEE
Confidence 345799999999999998654 7888 99999999 4567999999999999999999999864 356999999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
||++.++ +|++||++.|+|.++..+....+||+|..
T Consensus 115 ~d~d~~~---------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 115 YDFDRFS---------KHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp EECCSSS---------CCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred EECCCCC---------CCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 9999775 89999999999999988888899999973
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=151.57 Aligned_cols=111 Identities=21% Similarity=0.363 Sum_probs=93.9
Q ss_pred CCeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEcC---eEEEeecccCCCCCeeeeeeEEe-cCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGE-GSSSPFVEVEFEK---QILRTQVKYKDLNPIWNEKLVFD-VPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~-v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+.+|.. |.+||||++.+.+ +.++|+++++|+||.|||+|.|. +. .+++....|.|+|||
T Consensus 20 ~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~-~~~~~~~~l~i~V~d 98 (138)
T 1ugk_A 20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIP-YTQIQELALHFTILS 98 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCC-STTGGGCEEEEEEEE
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcC-HHHhccCEEEEEEEE
Confidence 356899999999999999985 8999999999973 68999999999999999999996 54 334456799999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
++.++ +|++||++.|+|.++....+. ...|++|.++.
T Consensus 99 ~d~~~-~~~~lG~~~i~l~~l~~~~~~-~~~~~~l~~~~ 135 (138)
T 1ugk_A 99 FDRFS-RDDIIGEVLIPLSGIELSEGK-MLMNREIISGP 135 (138)
T ss_dssp ECSSC-CCCCCEEEEEECTTCCCTTCC-EEEEEECBSSS
T ss_pred CCCCC-CCcEEEEEEEehhHccCCCCc-chhhhhhhcCC
Confidence 99986 799999999999999654333 34689998764
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=6.2e-17 Score=156.08 Aligned_cols=110 Identities=21% Similarity=0.472 Sum_probs=94.9
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEE-----cCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|++|+.++..|.+||||++.+ ..+.++|+++++|+||.|||+|.|.+....++....|.|+|||
T Consensus 19 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d 98 (141)
T 1v27_A 19 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD 98 (141)
T ss_dssp TTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEE
T ss_pred CCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEE
Confidence 35789999999999999999999999999999 3568999999999999999999999644444556899999999
Q ss_pred CCCCCCC--CceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 79 ERRSSNS--RNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 79 ~~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
++.++ + +++||++.|++.++...+ ..+||+|.+..
T Consensus 99 ~d~~~-~~~~~~lG~~~i~l~~l~~~~---~~~W~~L~~~~ 135 (141)
T 1v27_A 99 QARVR-EEESEFLGEILIELETALLDD---EPHWYKLQTHD 135 (141)
T ss_dssp BCSSS-SCCBCCCEEEEEEGGGCCCSS---EEEEEECBCCS
T ss_pred CCCCc-CCCCceEEEEEEEccccCCCC---CCceEECcccc
Confidence 99986 4 899999999999986532 46899998764
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.9e-17 Score=156.63 Aligned_cols=110 Identities=17% Similarity=0.250 Sum_probs=92.7
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-----CEEEeeecccCCCCCeecceeEEEeeCC---CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-----QKWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-----~~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i 666 (971)
+..|.|.|+|++|+||+.++. ..|.+ ||||++.++ ...++|+++++++||.|||.|.|.+... ...|.|
T Consensus 20 ~~~~~L~V~v~~a~~L~~~d~--~~~~~-dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~ 96 (148)
T 3fdw_A 20 QQTQSLVVHVKECHQLAYADE--AKKRS-NPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQF 96 (148)
T ss_dssp TTTTEEEEEEEEEESCCCSBT--TTTBC-CEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEE
T ss_pred CCCCEEEEEEEEecCCCCccc--CCCCC-CeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEE
Confidence 345899999999999998651 36788 999999995 3479999999999999999999998753 348999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCC
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHP 716 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~ 716 (971)
+|||+|.++ +|++||++.|+|.++..+.....||+|.....
T Consensus 97 ~V~d~d~~~---------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~ 137 (148)
T 3fdw_A 97 SVWHHGRFG---------RNTFLGEAEIQMDSWKLDKKLDHCLPLHGKIS 137 (148)
T ss_dssp EEEEECGGG---------CEEEEEEEEEEHHHHHHHCCSEEEEECBCC--
T ss_pred EEEECCCCc---------CCcEEEEEEEEcccccccCCccceEECcCccc
Confidence 999999776 89999999999999976666689999985443
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=153.34 Aligned_cols=105 Identities=24% Similarity=0.342 Sum_probs=92.9
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE---CCEEEeeecccCCCCCeecceeEEEeeCC---CcEEEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY---GQKWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITVGV 668 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~---g~~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i~V 668 (971)
+..+.|.|+|++|++|+.++. .|.+ ||||++.+ +.+.+||+++++++||.|||.|.|.+... ...|.|+|
T Consensus 31 ~~~~~L~v~v~~a~~L~~~d~---~g~~-dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V 106 (143)
T 3f04_A 31 FQNNQLLVGIIQAAELPALDM---GGTS-DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAV 106 (143)
T ss_dssp TTTTEEEEEEEEEECCCCBGG---GBCC-CEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEE
T ss_pred CCCCEEEEEEEEecCCCCCCC---CCCc-CcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEE
Confidence 345799999999999998654 6788 99999999 45689999999999999999999998743 36999999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
||+|.++ +|++||++.|+|.++..+....+||+|.
T Consensus 107 ~d~d~~~---------~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 141 (143)
T 3f04_A 107 YDFDRFS---------KHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp EECCSSS---------CCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred EeCCCCC---------CCceEEEEEEEHHHccCCCCcceEEECc
Confidence 9999775 8999999999999999888889999996
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-16 Score=148.11 Aligned_cols=102 Identities=19% Similarity=0.317 Sum_probs=81.3
Q ss_pred CCCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecc-cCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 2 GDGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVK-YKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 2 ~~~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~-~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
||+.+.|.|+|++|++|.. .|.+||||+++ . +..+|+++ .+++||.|||+|.|.+...+ ..|.|+|||++
T Consensus 1 ~~~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~-~~~kt~~~~~~t~nP~WnE~f~f~v~~~~----~~L~~~V~D~d 71 (131)
T 2cjt_A 1 GGVMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V-QNVKSTTIAVRGSQPSWEQDFMFEINRLD----LGLTVEVWNKG 71 (131)
T ss_dssp CCCCEEEEEEEEEEECSSC---GGGCEEEEEEE-E-TTEEEECCCEESSSCEEEEEEEEEECCCS----SEEEEEEEECC
T ss_pred CCcceEEEEEEEEeECCCC---CCCcCeEEEEE-e-cCEEEeEecCCCCCceECCEEEEEEeCCC----CeEEEEEEECC
Confidence 7889999999999998853 67899999999 3 33445554 47999999999999998654 67999999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 81 RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
++ +|++||++.|+|.++...+......|+++.
T Consensus 72 -~~-~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~ 103 (131)
T 2cjt_A 72 -LI-WDTMVGTVWIPLRTIRQSNEEGPGEWLTLD 103 (131)
T ss_dssp -SS-CEEEEEEEEEEGGGSCBCSSCCCCEEEECB
T ss_pred -CC-CCCeEEEEEEEHHHhhhcCCCCccccEEcc
Confidence 66 799999999999998654432223455554
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-16 Score=149.53 Aligned_cols=103 Identities=24% Similarity=0.379 Sum_probs=85.0
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-----CCEEEeeecccCCCCCeecceeEEEeeC----CCcEEEE
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-----GQKWVRTRTVVDSLSPKWNEQYTWEVFD----PCTVITV 666 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-----g~~~~rT~~~~~~~nP~Wne~~~~~v~~----~~~~l~i 666 (971)
..|.|.|+|++|+||++++ ..|++ ||||++.+ +...+||+++++++||.|||.|.|.+.. ....|.|
T Consensus 16 ~~~~L~v~v~~a~~L~~~d---~~~~~-dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~ 91 (129)
T 2bwq_A 16 VGHQLIVTILGAKDLPSRE---DGRPR-NPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEI 91 (129)
T ss_dssp TTTEEEEEEEEEESCCCCT---TSCCB-CEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEE
T ss_pred CCCEEEEEEEEeeCCCCCC---CCCCC-CCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEE
Confidence 3579999999999999865 47888 99999999 4578999999999999999999999643 2359999
Q ss_pred EEEeCCCCCccccCCCCCC--CceeEEEEEEcccccCCceEeeeEece
Q 046822 667 GVFDNCSLDKNIINNSGGR--DSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~--d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
+|||++.++ + |++||++.|+|.++.... ..+||+|.
T Consensus 92 ~V~d~d~~~---------~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq 129 (129)
T 2bwq_A 92 TLWDQARVR---------EEESEFLGEILIELETALLDD-EPHWYKLQ 129 (129)
T ss_dssp EEEEC----------------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred EEEECCcCc---------CcCCceeEEEEEEccccCCCc-CCccEECc
Confidence 999999764 4 999999999999986544 68999983
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=156.17 Aligned_cols=105 Identities=18% Similarity=0.133 Sum_probs=90.7
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC------EEEeeecccCCCCCeecceeEEEeeCC---CcEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ------KWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVIT 665 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~------~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~ 665 (971)
+..+.|.|+|++|+||++++ ..|++ ||||++.+.+ ..+||+++++++||+|||.|.|.+... ...|.
T Consensus 40 ~~~~~L~V~Vi~a~~L~~~d---~~g~s-DPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~ 115 (155)
T 2z0u_A 40 EKNKQFAILIIQLSNLSALL---QQQDQ-KVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLR 115 (155)
T ss_dssp TTTTEEEEEEEEEECGGGTC---CSCCS-EEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEE
T ss_pred CCCCEEEEEEEEccCcCCcc---cCCCC-CEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEE
Confidence 34579999999999999865 47889 9999999954 279999999999999999999998742 45899
Q ss_pred EEEEeCCCCCccccCCCCCCCceeEEEEEEccccc-CCceEeeeEece
Q 046822 666 VGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLE-SDRVYTHSYPLL 712 (971)
Q Consensus 666 i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~-~~~~~~~~~~L~ 712 (971)
|+|||+|.++ +|++||++.|+|+++. .+....+||+|.
T Consensus 116 ~~V~d~d~~~---------~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 116 VDVCTTDRSH---------LEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp EEEEEECTTS---------CEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred EEEEECCCCC---------CCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 9999999776 8999999999999995 356678999985
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-16 Score=149.64 Aligned_cols=103 Identities=15% Similarity=0.218 Sum_probs=90.6
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-----CCEEEeeecccCCCCCeecceeEEE-eeC---CCcEEEEE
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-----GQKWVRTRTVVDSLSPKWNEQYTWE-VFD---PCTVITVG 667 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-----g~~~~rT~~~~~~~nP~Wne~~~~~-v~~---~~~~l~i~ 667 (971)
.|.|.|+|++|+||+. + ..|.+ ||||++.+ +....||+++++++||.|||.|.|. +.. ....|.|+
T Consensus 19 ~~~L~V~V~~a~~L~~-~---~~g~~-DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~ 93 (134)
T 2b3r_A 19 NGTLFIMVMHIKDLVT-E---DGADP-NPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLS 93 (134)
T ss_dssp TTEEEEEEEEEECCCC-T---TSCCC-CEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEE
T ss_pred CCEEEEEEEEeeCCCC-C---CCCCC-CeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEE
Confidence 4789999999999985 3 36788 99999998 3567999999999999999999999 763 34699999
Q ss_pred EEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 668 VFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
|||+|.++ +|++||++.|+|+++..+.....||+|..
T Consensus 94 V~d~d~~~---------~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 130 (134)
T 2b3r_A 94 VLSAESLR---------ENFFLGGITLPLKDFNLSKETVKWYQLTA 130 (134)
T ss_dssp EEECCSSS---------CCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred EEECCCCC---------CCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence 99999775 89999999999999988777899999974
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=155.69 Aligned_cols=111 Identities=22% Similarity=0.393 Sum_probs=94.0
Q ss_pred CCeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEc-----CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKD-GEGSSSPFVEVEFE-----KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVF 77 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d-~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~ 77 (971)
..+.|.|+|++|+||+.++ ..|.+||||++.+. .+.++|+++++|+||.|||+|.|.+... ++....|.|+||
T Consensus 21 ~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~~~L~~~V~ 99 (148)
T 3fdw_A 21 QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPES-LLAQRTLQFSVW 99 (148)
T ss_dssp TTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCST-TGGGCEEEEEEE
T ss_pred CCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChh-HhCceEEEEEEE
Confidence 3578999999999999988 57899999999997 3489999999999999999999998753 344578999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCC
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSL 118 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~ 118 (971)
|++.++ ++++||++.|+|.++.... ...+||+|.+++.
T Consensus 100 d~d~~~-~~~~iG~~~i~l~~l~~~~--~~~~W~~L~~~~~ 137 (148)
T 3fdw_A 100 HHGRFG-RNTFLGEAEIQMDSWKLDK--KLDHCLPLHGKIS 137 (148)
T ss_dssp EECGGG-CEEEEEEEEEEHHHHHHHC--CSEEEEECBCC--
T ss_pred ECCCCc-CCcEEEEEEEEcccccccC--CccceEECcCccc
Confidence 999986 7999999999999996432 3358999998754
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-16 Score=152.57 Aligned_cols=108 Identities=31% Similarity=0.497 Sum_probs=93.0
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc---CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE---KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
..+.|.|+|++|++|+.++..|.+||||++.+. .+.++|+++++++||.|||+|.|.+... ++....|.|+|||++
T Consensus 32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~l~~~~L~i~V~d~d 110 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS-ELGGKTLVMAVYDFD 110 (143)
T ss_dssp TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHH-HHTTCEEEEEEEECC
T ss_pred CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHh-hcCCCEEEEEEEeCC
Confidence 467899999999999999988999999999994 4589999999999999999999997642 233479999999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCcccceEEEeEe
Q 046822 81 RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEK 115 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~ 115 (971)
.++ +|++||++.|+|.++.. +.....||+|++
T Consensus 111 ~~~-~~~~iG~~~i~l~~l~~--~~~~~~W~~L~~ 142 (143)
T 3f04_A 111 RFS-KHDIIGEFKVPMNTVDF--GHVTEEWRDLQS 142 (143)
T ss_dssp SSS-CCEEEEEEEEEGGGCCT--TSCEEEEEECBC
T ss_pred CCC-CCceEEEEEEEHHHccC--CCCcceEEECcC
Confidence 987 79999999999999854 233458999975
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.1e-16 Score=153.12 Aligned_cols=108 Identities=31% Similarity=0.497 Sum_probs=92.9
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc---CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE---KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
..+.|.|+|++|+||+.+|..|.+||||++.+. .+.++|+++++++||.|||+|.|.+... ++....|.|+|||++
T Consensus 40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~l~~~~L~i~V~d~d 118 (152)
T 1rsy_A 40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS-ELGGKTLVMAVYDFD 118 (152)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHH-HHTTCEEEEEEEECC
T ss_pred CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHH-HcCCCEEEEEEEECC
Confidence 457899999999999999999999999999995 4589999999999999999999997642 233478999999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCcccceEEEeEe
Q 046822 81 RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEK 115 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~ 115 (971)
.++ ++++||++.|++.++.. +....+||+|.+
T Consensus 119 ~~~-~~~~iG~~~i~l~~l~~--~~~~~~W~~L~~ 150 (152)
T 1rsy_A 119 RFS-KHDIIGEFKVPMNTVDF--GHVTEEWRDLQS 150 (152)
T ss_dssp SSS-CCEEEEEEEEEGGGCCC--SSCEEEEEECBC
T ss_pred CCC-CCcEEEEEEEEchhccC--CCCcceEEECCC
Confidence 986 79999999999999854 234468999975
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.6e-17 Score=156.56 Aligned_cols=109 Identities=33% Similarity=0.578 Sum_probs=92.3
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe--------------EEEeecccCCCCCeeeeeeEEe-cCCCCCCCc
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ--------------ILRTQVKYKDLNPIWNEKLVFD-VPDIAELPY 69 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~--------------~~~T~~~~~t~nP~wne~f~f~-v~~~~~l~~ 69 (971)
.+.|.|+|++|+||+.+|..|.+||||++.+.+. .++|+++++|+||.|||+|.|. +. .+++..
T Consensus 17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~-~~~l~~ 95 (142)
T 1rh8_A 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSIS-MEQLMK 95 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCC-HHHHTT
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcC-HHHccC
Confidence 4689999999999999999999999999999863 4789999999999999999997 43 222334
Q ss_pred ceEEEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 70 KHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 70 ~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
..|.|+|||++.++ ++++||++.|++.++... .....||+|.+++
T Consensus 96 ~~l~i~V~d~d~~~-~~~~lG~~~i~l~~l~~~--~~~~~W~~L~~~~ 140 (142)
T 1rh8_A 96 KTLEVTVWDYDRFS-SNDFLGEVLIDLSSTSHL--DNTPRWYPLKEQT 140 (142)
T ss_dssp CEEEEEEEEECSSS-CEEEEEEEEEETTSCGGG--TTCCEEEECBCCC
T ss_pred CEEEEEEEECCCCC-CCceEEEEEEeccccccC--CCCCeEEECCccC
Confidence 79999999999986 799999999999998542 2345899998764
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-16 Score=153.22 Aligned_cols=111 Identities=28% Similarity=0.395 Sum_probs=93.4
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+.+|..|.+||||++.+.+ +.++|+++++++||.|||+|.|.+... ++....|.|+|||
T Consensus 23 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~l~~~~l~i~V~d 101 (159)
T 1tjx_A 23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE-QIQKVQVVVTVLD 101 (159)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGG-GGGGCEEEEEEEE
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHH-HhCCcEEEEEEEE
Confidence 4678999999999999999999999999999963 478999999999999999999998643 3445789999999
Q ss_pred CCCCCCCCceeEEEEEeCccc----------cccCCcccceEEEeEeC
Q 046822 79 ERRSSNSRNFLGKVRAPCSQL----------CKNEGEATAQLYTLEKR 116 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l----------~~~~~~~~~~w~~L~~~ 116 (971)
++.++ +|++||++.|++..+ .........+||+|.++
T Consensus 102 ~d~~~-~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~ 148 (159)
T 1tjx_A 102 YDKIG-KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 148 (159)
T ss_dssp CCSSS-CCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred CCCCC-CCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCc
Confidence 99986 799999999999953 22333445689999865
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.2e-16 Score=150.17 Aligned_cols=108 Identities=23% Similarity=0.336 Sum_probs=90.4
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-----CCEEEeeecccCCCCCeecceeEEEeeC----CCcEEEE
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-----GQKWVRTRTVVDSLSPKWNEQYTWEVFD----PCTVITV 666 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-----g~~~~rT~~~~~~~nP~Wne~~~~~v~~----~~~~l~i 666 (971)
..+.|.|+|++|+||+.++. .|.+ ||||++.+ +...+||+++++++||.|||.|.|.+.. ....|.|
T Consensus 19 ~~~~L~v~v~~a~~L~~~d~---~g~~-dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i 94 (141)
T 1v27_A 19 VGHQLIVTILGAKDLPSRED---GRPR-NPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEI 94 (141)
T ss_dssp TTTEEEEEEEEEESCCCCSS---SCCC-CEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEE
T ss_pred CCCEEEEEEEEccCCCCcCC---CCCC-CCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEE
Confidence 34789999999999998654 7888 99999998 4567999999999999999999999543 2359999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecC
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLH 715 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~ 715 (971)
+|||++.++ ..+|++||++.|+|.++..+. ..+||+|....
T Consensus 95 ~V~d~d~~~-------~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~ 135 (141)
T 1v27_A 95 TLWDQARVR-------EEESEFLGEILIELETALLDD-EPHWYKLQTHD 135 (141)
T ss_dssp EEEEBCSSS-------SCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCS
T ss_pred EEEECCCCc-------CCCCceEEEEEEEccccCCCC-CCceEECcccc
Confidence 999999775 013999999999999986654 68999998543
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.65 E-value=6.7e-16 Score=153.14 Aligned_cols=112 Identities=26% Similarity=0.444 Sum_probs=92.1
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+.+|..|.+||||++.+.+ ..++|+++++|+||.|||+|.|.+... ++....|.|+|||
T Consensus 35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~l~~~~L~i~V~d 113 (166)
T 2cm5_A 35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS-DLAKKSLDISVWD 113 (166)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGG-GGGGCEEEEEEEE
T ss_pred CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchH-hcCCCEEEEEEEE
Confidence 4678999999999999999999999999999985 689999999999999999999998642 3445799999999
Q ss_pred CCCCCCCCceeEEEEEeCcccc----------ccCCcccceEEEeEeCC
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLC----------KNEGEATAQLYTLEKRS 117 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~----------~~~~~~~~~w~~L~~~~ 117 (971)
++.++ ++++||++.|++.++. ...+....+|++|..+.
T Consensus 114 ~d~~~-~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~~~~ 161 (166)
T 2cm5_A 114 YDIGK-SNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQNEN 161 (166)
T ss_dssp CCSSS-CCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECBC--
T ss_pred CCCCC-CCcEEEeEEEecccCCchhHHHHHHHhCCCCcceEeeECCCcc
Confidence 99986 7999999999999852 12233344677776543
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-16 Score=151.41 Aligned_cols=106 Identities=27% Similarity=0.470 Sum_probs=92.5
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc-----CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE-----KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
.+.|.|+|++|++|+.+|..|.+||||++.+. .+.++|+++++++||.|||+|.|.+...+. ...|.|+|||+
T Consensus 30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~--~~~L~i~V~d~ 107 (149)
T 1a25_A 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDK--DRRLSVEIWDW 107 (149)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGG--GCEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccC--CCEEEEEEEEC
Confidence 56899999999999999999999999999997 358999999999999999999999875421 36899999999
Q ss_pred CCCCCCCceeEEEEEeCccccccCCcccceEEEeEeC
Q 046822 80 RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~ 116 (971)
+.++ ++++||++.|++.++... . ...||+|.+.
T Consensus 108 d~~~-~~~~iG~~~i~l~~l~~~--~-~~~W~~L~~~ 140 (149)
T 1a25_A 108 DLTS-RNDFMGSLSFGISELQKA--G-VDGWFKLLSQ 140 (149)
T ss_dssp CSSS-CCEEEEEEEEEHHHHTTC--C-EEEEEECBCH
T ss_pred CCCC-CCCEEEEEEEEHHHhCcC--c-cCCeEEccCC
Confidence 9986 799999999999998653 2 4589999764
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.5e-16 Score=151.47 Aligned_cols=106 Identities=25% Similarity=0.359 Sum_probs=91.0
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-----CCEEEeeecccCCCCCeecceeEEEe--eCCCcEEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-----GQKWVRTRTVVDSLSPKWNEQYTWEV--FDPCTVITVG 667 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-----g~~~~rT~~~~~~~nP~Wne~~~~~v--~~~~~~l~i~ 667 (971)
+..|.|.|+|++|+||++++ .|.+ ||||++.+ +...++|+++++++||.|||.|.|.+ .+....|.|+
T Consensus 24 ~~~~~L~V~v~~a~~L~~~d----~g~~-Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~ 98 (153)
T 3fbk_A 24 AQDRVLLLHIIEGKGLISKQ----PGTC-DPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVT 98 (153)
T ss_dssp ESSSEEEEEEEEEESCCCCS----SSCC-CEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEE
T ss_pred CCCCEEEEEEEEeeCCCCCC----CCCC-CEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEE
Confidence 34589999999999999864 4788 99999998 23569999999999999999999999 4555689999
Q ss_pred EEeCCCCCccccCCCCCC-CceeEEEEEEcccccC-CceEeeeEeceec
Q 046822 668 VFDNCSLDKNIINNSGGR-DSRIGKVRIRLSTLES-DRVYTHSYPLLML 714 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~-d~~iG~~~i~l~~l~~-~~~~~~~~~L~~~ 714 (971)
|||++.++ + |++||++.|+|.+|.. +.....||+|...
T Consensus 99 V~d~d~~~---------~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~ 138 (153)
T 3fbk_A 99 VWNRASQS---------RQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE 138 (153)
T ss_dssp EEECCSSG---------GGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred EEeCCCCC---------CCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence 99999765 5 9999999999999975 6777899999854
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.2e-16 Score=148.39 Aligned_cols=94 Identities=30% Similarity=0.490 Sum_probs=83.8
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+.+|..|.+||||++.+.+ +.++|+++++++||.|||+|.|.+... .+....|.|+|||
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~l~~~~l~~~V~d 92 (138)
T 3n5a_A 14 SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE-KLRETTIIITVMD 92 (138)
T ss_dssp TTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGG-GGGGEEEEEEEEE
T ss_pred CCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChh-hcCceEEEEEEEE
Confidence 4678999999999999999999999999999974 478999999999999999999998643 3445789999999
Q ss_pred CCCCCCCCceeEEEEEeCccc
Q 046822 79 ERRSSNSRNFLGKVRAPCSQL 99 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l 99 (971)
++.++ +|++||++.|++.++
T Consensus 93 ~~~~~-~~~~lG~~~i~l~~~ 112 (138)
T 3n5a_A 93 KDKLS-RNDVIGKIYLSWKSG 112 (138)
T ss_dssp CCSSS-CCEEEEEEEESSSSC
T ss_pred CCCCC-CCcEEEEEEEccccC
Confidence 99986 799999999999975
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=146.59 Aligned_cols=106 Identities=23% Similarity=0.255 Sum_probs=88.1
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCC-CcccCcEEEEEEC---CEEEeeecccCCCCCeecceeEEE-eeC---CCcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGK-GGSVDAYCVAKYG---QKWVRTRTVVDSLSPKWNEQYTWE-VFD---PCTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~-g~s~dpy~~~~~g---~~~~rT~~~~~~~nP~Wne~~~~~-v~~---~~~~l~i 666 (971)
+..+.|.|+|++|+||++++. . |++ ||||++.++ ...+||+++++++||.|||.|.|. +.. ....|.|
T Consensus 19 ~~~~~L~v~v~~a~~L~~~d~---~~~~~-dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i 94 (138)
T 1ugk_A 19 FERKAFVVNIKEARGLPAMDE---QSMTS-DPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHF 94 (138)
T ss_dssp GGGTEEEEEEEEEESCCCCBT---TTTBC-EEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEE
T ss_pred CCCCEEEEEEEEeeCCCCCCC---CCCCC-CCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEE
Confidence 345789999999999998653 4 788 999999994 478999999999999999999996 653 2349999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCce-EeeeEecee
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRV-YTHSYPLLM 713 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~-~~~~~~L~~ 713 (971)
+|||+|.++ +|++||++.|+|.++..+.. ...|++|..
T Consensus 95 ~V~d~d~~~---------~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~ 133 (138)
T 1ugk_A 95 TILSFDRFS---------RDDIIGEVLIPLSGIELSEGKMLMNREIIS 133 (138)
T ss_dssp EEEEECSSC---------CCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred EEEECCCCC---------CCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence 999999775 89999999999999976533 345688864
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.8e-16 Score=149.37 Aligned_cols=106 Identities=19% Similarity=0.241 Sum_probs=89.3
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-----CEEEeeecccCCCCCeecceeEEEeeC---CCcEEEEE
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-----QKWVRTRTVVDSLSPKWNEQYTWEVFD---PCTVITVG 667 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-----~~~~rT~~~~~~~nP~Wne~~~~~v~~---~~~~l~i~ 667 (971)
..+.|.|+|++|+||++++. .| + ||||++.+. ...+||+++++++||.|||.|.|.+.. ....|.|+
T Consensus 22 ~~~~L~v~v~~a~~L~~~d~---~g-~-dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~ 96 (142)
T 2dmg_A 22 QRNKLIVVVHACRNLIAFSE---DG-S-DPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVA 96 (142)
T ss_dssp TTTEEEEEEEEEECCCCSST---TC-C-CEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEE
T ss_pred CCCEEEEEEEEeECCCCCCC---CC-C-CeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEE
Confidence 45789999999999998754 67 8 999999993 257899999999999999999999863 23489999
Q ss_pred EEeCCCCCccccCCCCCC-CceeEEEEEEcccccCCceEeeeEeceec
Q 046822 668 VFDNCSLDKNIINNSGGR-DSRIGKVRIRLSTLESDRVYTHSYPLLML 714 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~-d~~iG~~~i~l~~l~~~~~~~~~~~L~~~ 714 (971)
|||++.++ .+ |++||++.|+|.++..+....+||+|...
T Consensus 97 V~d~d~~~--------~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~ 136 (142)
T 2dmg_A 97 VKNSGGFL--------SKDKGLLGKVLVALASEELAKGWTQWYDLTED 136 (142)
T ss_dssp EEECCCSS--------CCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred EEECCCcc--------ccCCcEEEEEEEecccccccccccceeeccCC
Confidence 99999764 22 57999999999999776677899999853
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.64 E-value=5.8e-16 Score=151.32 Aligned_cols=110 Identities=20% Similarity=0.347 Sum_probs=91.1
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc-----CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE-----KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+.+| .|.+||||++.+. ...++|+++++|+||.|||+|.|.+... .+. ..|.|+|||
T Consensus 25 ~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~-~~L~i~V~d 101 (153)
T 3fbk_A 25 QDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEE-DDQ-KRLLVTVWN 101 (153)
T ss_dssp SSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGG-GTT-SEEEEEEEE
T ss_pred CCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccH-HhC-CEEEEEEEe
Confidence 4678999999999999999 6999999999994 3579999999999999999999998532 222 459999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
++.++++|++||++.|++.++...+ .....||+|.+..
T Consensus 102 ~d~~~~~d~~lG~~~i~l~~l~~~~-~~~~~W~~L~~~~ 139 (153)
T 3fbk_A 102 RASQSRQSGLIGCMSFGVKSLLTPD-KEISGWYYLLGEH 139 (153)
T ss_dssp CCSSGGGCEEEEEEEEEHHHHTC---CCEEEEEECBCTT
T ss_pred CCCCCCCCcEEEEEEEEHHHhcCCC-CccccEEECCChh
Confidence 9998633899999999999996433 3345899998764
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=149.53 Aligned_cols=93 Identities=30% Similarity=0.433 Sum_probs=77.2
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc--Ce---EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE--KQ---ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~--~~---~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+.+|..|.+||||++.+. +. +++|+++++|+||.|||+|.|.+... ++....|.|+|||
T Consensus 28 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~l~~~~l~v~V~d 106 (153)
T 1w15_A 28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCE-SLEEISVEFLVLD 106 (153)
T ss_dssp TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSS-SSTTEEEEEEEEE
T ss_pred CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHH-HhCceEEEEEEEe
Confidence 457899999999999999989999999999994 33 67999999999999999999998753 4455789999999
Q ss_pred CCCCCCCCceeEEEEEeCcc
Q 046822 79 ERRSSNSRNFLGKVRAPCSQ 98 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~ 98 (971)
++.++ ++++||++.|++.+
T Consensus 107 ~d~~~-~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 107 SERGS-RNEVIGRLVLGATA 125 (153)
T ss_dssp CCTTS-CCEEEEEEEESTTC
T ss_pred CCCCC-CCcEEEEEEECCCC
Confidence 99986 79999999999988
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.64 E-value=6e-16 Score=154.10 Aligned_cols=106 Identities=29% Similarity=0.425 Sum_probs=90.9
Q ss_pred CeEEEEEEEEeeCCCCCCC-CCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEE-
Q 046822 5 KEKLVVEVIAAHNLMPKDG-EGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVF- 77 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~-~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~- 77 (971)
.+.|.|+|++|+||+.+|. .|.+||||++.+.+ ..++|+++++|+||+|||+|.|.+... ...|.|+||
T Consensus 29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~~L~~~V~~ 104 (171)
T 2q3x_A 29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQ----GKVLQVIVWG 104 (171)
T ss_dssp TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCT----TEEEEEEEEE
T ss_pred CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCC----CCEEEEEEEE
Confidence 5789999999999999995 79999999999974 378999999999999999999998643 389999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
|++.++ +|++||++.|+|.++... ....+||+|.+..
T Consensus 105 d~d~~~-~d~~iG~~~i~l~~l~~~--~~~~~W~~L~~~~ 141 (171)
T 2q3x_A 105 DYGRMD-HKCFMGVAQILLEELDLS--SMVIGWYKLFPPS 141 (171)
T ss_dssp ECSTTC-SSEEEEEEEECGGGSCTT--SCEEEEEECBCGG
T ss_pred cCCCCC-CCCEEEEEEEEHHHcccC--CCcceeEECCCcc
Confidence 999986 789999999999999642 2346899998764
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=145.95 Aligned_cols=107 Identities=21% Similarity=0.302 Sum_probs=90.2
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
..+.|.|+|++|+ ++|..|.+||||++.+.. ..++|+++++|+||.|||+|.|.+.. .++....|.|+|||+
T Consensus 24 ~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~-~~l~~~~L~~~V~d~ 99 (138)
T 1wfm_A 24 QKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAE-EELPTATLTLTLRTC 99 (138)
T ss_dssp TTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCT-TSSTTCEEEEEEEEC
T ss_pred CCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecH-HHcCCCEEEEEEEEC
Confidence 4678999999999 367789999999999942 36899999999999999999999764 345567999999999
Q ss_pred CCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 80 RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
+.++ +|++||++.++|.++... .....||+|.+..
T Consensus 100 d~~~-~dd~lG~~~i~l~~l~~~--~~~~~W~~L~~~~ 134 (138)
T 1wfm_A 100 DRFS-RHSVAGELRLGLDGTSVP--LGAAQWGELKTSG 134 (138)
T ss_dssp CSSC-TTSCSEEEEEESSSSSSC--TTCCEEEECCCCS
T ss_pred CCCC-CCcEEEEEEEEcccccCc--ccccceeeCcCCC
Confidence 9987 799999999999998532 2345899998753
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.6e-16 Score=150.10 Aligned_cols=108 Identities=26% Similarity=0.484 Sum_probs=91.6
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEe-cCCCCCCCcceEEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFD-VPDIAELPYKHIEVNVF 77 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~-v~~~~~l~~~~L~i~V~ 77 (971)
..+.|.|+|++|++|+.++..|.+||||++.+.+ ..++|+++++++||.|||+|.|. +. ..++....|.|+||
T Consensus 27 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~~~~~~l~i~V~ 105 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGIT-EEDMQRKTLRISVC 105 (142)
T ss_dssp GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCC-HHHHHHCEEEEEEE
T ss_pred CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccC-HHHccCCEEEEEEE
Confidence 4578999999999999999999999999999975 68999999999999999999998 43 22233368999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEe
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEK 115 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~ 115 (971)
|++.++ ++++||++.|++.++... .....|++|+.
T Consensus 106 d~d~~~-~d~~iG~~~i~l~~l~~~--~~~~~~~~L~~ 140 (142)
T 2chd_A 106 DEDKFG-HNEFIGETRFSLKKLKAN--QRKNFNICLER 140 (142)
T ss_dssp EECTTS-CEEEEEEEEEEGGGCCTT--CCEEEEEECBC
T ss_pred ECCCCC-CCcEEEEEEEEHHHcCCC--CccEEEEeccc
Confidence 999986 789999999999998642 34457888864
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-15 Score=145.03 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=87.4
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC---C-EEEeeecccCCCCCeecceeEEEeeCC---CcEEEEEE
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---Q-KWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITVGV 668 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g---~-~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i~V 668 (971)
..+.|.|+|++|++ + |..|.+ ||||++.+. + ..+||+++++++||.|||.|.|.+... ...|.|+|
T Consensus 24 ~~~~L~V~v~~a~~---~---d~~g~s-DPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V 96 (138)
T 1wfm_A 24 QKAELFVTRLEAVT---S---NHDGGC-DCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTL 96 (138)
T ss_dssp TTTEEEEEEEEEEC---C---CCSSCC-CEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEE
T ss_pred CCCEEEEEEEEEEc---C---CCCCCc-ceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEE
Confidence 34789999999994 2 457889 999999993 2 368999999999999999999998743 45899999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
||+|.++ +|++||++.|+|.++..+.....||+|..
T Consensus 97 ~d~d~~~---------~dd~lG~~~i~l~~l~~~~~~~~W~~L~~ 132 (138)
T 1wfm_A 97 RTCDRFS---------RHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp EECCSSC---------TTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred EECCCCC---------CCcEEEEEEEEcccccCcccccceeeCcC
Confidence 9999876 89999999999999976666689999985
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.6e-16 Score=150.87 Aligned_cols=111 Identities=28% Similarity=0.372 Sum_probs=92.4
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+.++..| +||||++.+.. ..++|+++++|+||.|||+|.|.+... ++....|.|+|||
T Consensus 22 ~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~l~~~~L~i~V~d 99 (142)
T 2dmg_A 22 QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLP-EVQRRTLDVAVKN 99 (142)
T ss_dssp TTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHH-HHHHCEEEEEEEE
T ss_pred CCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHH-HhCcCEEEEEEEE
Confidence 3578999999999999999888 99999999953 578999999999999999999997632 2334689999999
Q ss_pred CCCCCCC-CceeEEEEEeCccccccCCcccceEEEeEeCCC
Q 046822 79 ERRSSNS-RNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSL 118 (971)
Q Consensus 79 ~~~~~~~-d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~ 118 (971)
++.++.+ +++||++.|++.++.... ...+||+|.+.+.
T Consensus 100 ~d~~~~~~~~~iG~~~i~l~~~~~~~--~~~~W~~L~~~~~ 138 (142)
T 2dmg_A 100 SGGFLSKDKGLLGKVLVALASEELAK--GWTQWYDLTEDSG 138 (142)
T ss_dssp CCCSSCCSCCCCEEEEEECCCSTTTT--CBCCBCCCBCSCS
T ss_pred CCCccccCCcEEEEEEEecccccccc--cccceeeccCCCC
Confidence 9987633 579999999999986432 3458999987653
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.63 E-value=9.7e-16 Score=147.81 Aligned_cols=104 Identities=24% Similarity=0.394 Sum_probs=89.9
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-----EEEeeecccCCCCCeecceeEEE-eeCC---CcEEEE
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-----KWVRTRTVVDSLSPKWNEQYTWE-VFDP---CTVITV 666 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-----~~~rT~~~~~~~nP~Wne~~~~~-v~~~---~~~l~i 666 (971)
..+.|.|+|++|+||+.++. .|.+ ||||++++++ ..+||+++++++||.|||.|.|. +... ...|.|
T Consensus 27 ~~~~L~V~v~~a~~L~~~d~---~g~~-dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i 102 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPMDS---NGLA-DPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRI 102 (142)
T ss_dssp GGTEEEEEEEEEESCCCCCT---TSCC-CEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEE
T ss_pred CCCEEEEEEEEecCCCCCCC---CCCC-CCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEE
Confidence 45799999999999998653 7888 9999999964 68999999999999999999998 5422 258999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
+|||++.++ +|++||++.|+|.++..+.....|++|.
T Consensus 103 ~V~d~d~~~---------~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 139 (142)
T 2chd_A 103 SVCDEDKFG---------HNEFIGETRFSLKKLKANQRKNFNICLE 139 (142)
T ss_dssp EEEEECTTS---------CEEEEEEEEEEGGGCCTTCCEEEEEECB
T ss_pred EEEECCCCC---------CCcEEEEEEEEHHHcCCCCccEEEEecc
Confidence 999999775 8999999999999998887767777775
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=8.8e-16 Score=149.38 Aligned_cols=102 Identities=26% Similarity=0.399 Sum_probs=90.1
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-----CEEEeeecccCCCCCeecceeEEEeeCC--CcEEEEEEEe
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-----QKWVRTRTVVDSLSPKWNEQYTWEVFDP--CTVITVGVFD 670 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-----~~~~rT~~~~~~~nP~Wne~~~~~v~~~--~~~l~i~V~D 670 (971)
|.|.|+|++|+||+.++. .|++ ||||+++++ ...+||+++++++||.|||.|.|.+... ...|.|+|||
T Consensus 31 ~~L~v~v~~a~~L~~~d~---~g~~-dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d 106 (149)
T 1a25_A 31 EVLIVVVRDAKNLVPMDP---NGLS-DPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWD 106 (149)
T ss_dssp SEEEEEEEEEESCCCCST---TSCC-CEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEE
T ss_pred CEEEEEEEEeeCCCCCCC---CCCc-CeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEE
Confidence 679999999999998654 7888 999999995 4579999999999999999999999764 4589999999
Q ss_pred CCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 671 NCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 671 ~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
+|.++ +|++||++.|+|.++..+. ..+||+|..
T Consensus 107 ~d~~~---------~~~~iG~~~i~l~~l~~~~-~~~W~~L~~ 139 (149)
T 1a25_A 107 WDLTS---------RNDFMGSLSFGISELQKAG-VDGWFKLLS 139 (149)
T ss_dssp CCSSS---------CCEEEEEEEEEHHHHTTCC-EEEEEECBC
T ss_pred CCCCC---------CCCEEEEEEEEHHHhCcCc-cCCeEEccC
Confidence 99775 8999999999999997764 689999974
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=145.18 Aligned_cols=103 Identities=24% Similarity=0.352 Sum_probs=86.3
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-----EEEeeecccCCCCCeecceeEEEeeCCC---cEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-----KWVRTRTVVDSLSPKWNEQYTWEVFDPC---TVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-----~~~rT~~~~~~~nP~Wne~~~~~v~~~~---~~l~i 666 (971)
+..|.|.|+|++|+||+.++. .|.+ ||||++.+++ ...+|+++++++||.|||.|.|.+.... ..|.|
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~---~g~~-dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~ 88 (138)
T 3n5a_A 13 PSANSIIVNIIKARNLKAMDI---GGTS-DPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIII 88 (138)
T ss_dssp TTTTEEEEEEEEEESCCCCBT---TTBC-CEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEE
T ss_pred CCCCeEEEEEEEeeCCCCcCC---CCCc-CeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEE
Confidence 345899999999999998754 7888 9999999953 4689999999999999999999987544 48999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
+|||+|.++ +|++||++.|+|.++..+. .+|++|.
T Consensus 89 ~V~d~~~~~---------~~~~lG~~~i~l~~~~~~~--~~W~~l~ 123 (138)
T 3n5a_A 89 TVMDKDKLS---------RNDVIGKIYLSWKSGPGEV--KHWKDMI 123 (138)
T ss_dssp EEEECCSSS---------CCEEEEEEEESSSSCHHHH--HHHHHHH
T ss_pred EEEECCCCC---------CCcEEEEEEEccccCChHH--HHHHHHH
Confidence 999999775 8999999999999864332 4566655
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.3e-16 Score=148.86 Aligned_cols=109 Identities=19% Similarity=0.185 Sum_probs=90.3
Q ss_pred CceeEEEEEEEeeeCCCCC-Ccc---CCCCcccCcEEEEEEC---CEEEeeecccCCCCCeecceeEEEeeCC---CcEE
Q 046822 595 PHIGVLEMGILGATGLMPM-KFK---EGKGGSVDAYCVAKYG---QKWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVI 664 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~-~~~---~~~g~s~dpy~~~~~g---~~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l 664 (971)
+..|.|.|+|++|+||+.. +.. +..|.+ ||||++.++ .+.+||+++++++||.|||.|.|.+... ...|
T Consensus 23 ~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~-dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L 101 (147)
T 2enp_A 23 LLHNHLTVRVIEARDLPPPISHDGSRQDMAHS-NPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTL 101 (147)
T ss_dssp TTTTEEEEEEEEEECCCCSCSSCCSSCTTCCC-CCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEE
T ss_pred CCCCEEEEEEEEEeCCCCccccccccccCCCC-CcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEE
Confidence 3458999999999999973 331 124678 999999995 4578999999999999999999998642 3489
Q ss_pred EEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 665 TVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 665 ~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
.|+|||++.++ +|++||++.|+|.++..+.....||+|..
T Consensus 102 ~~~V~d~d~~~---------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~ 141 (147)
T 2enp_A 102 LLTVVDFDKFS---------RHCVIGKVSVPLCEVDLVKGGHWWKALIP 141 (147)
T ss_dssp EEEEECCSTTC---------CSCCCEEEEEETTTSCTTTCCCEEECCBC
T ss_pred EEEEEECCCCc---------CCcEEEEEEEechhcCCCCCccEEEEeec
Confidence 99999999775 89999999999999977665578888874
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-15 Score=147.83 Aligned_cols=106 Identities=27% Similarity=0.343 Sum_probs=88.9
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC--C---EEEeeecccCCCCCeecceeEEEeeCC---CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG--Q---KWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g--~---~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i 666 (971)
+..|.|.|+|++|+||+.++. .|.+ ||||++.++ + ..+||+++++++||.|||.|.|.+... ...|.|
T Consensus 22 ~~~~~L~V~v~~a~~L~~~d~---~g~~-dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i 97 (159)
T 1tjx_A 22 PTAGKLTVVILEAKNLKKMDV---GGLS-DPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVV 97 (159)
T ss_dssp TTTTEEEEEEEEEESCCCCST---TSCC-CEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEE
T ss_pred CCCCEEEEEEEEeeCCCCccC---CCCC-CeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEE
Confidence 345899999999999998754 7888 999999994 2 468999999999999999999998753 348999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccc------------cCCceEeeeEecee
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTL------------ESDRVYTHSYPLLM 713 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l------------~~~~~~~~~~~L~~ 713 (971)
+|||+|.++ +|++||++.|+|..+ ..+.....||+|..
T Consensus 98 ~V~d~d~~~---------~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~ 147 (159)
T 1tjx_A 98 TVLDYDKIG---------KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147 (159)
T ss_dssp EEEECCSSS---------CCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred EEEECCCCC---------CCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence 999999775 899999999999954 23455678888874
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.5e-16 Score=153.37 Aligned_cols=106 Identities=21% Similarity=0.248 Sum_probs=91.6
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC--C---EEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEE-e
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG--Q---KWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVF-D 670 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g--~---~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~-D 670 (971)
.|.|.|+|++|+||++++. ..|.+ ||||++.++ + ..+||+++++++||.|||.|.|.+......|.|+|| |
T Consensus 29 ~~~L~V~v~~a~~L~~~d~--~~g~~-DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d 105 (171)
T 2q3x_A 29 KGQLEVEVIRARSLTQKPG--SKSTP-APYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGD 105 (171)
T ss_dssp TTEEEEEEEEEESCCCCC-----CCC-EEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEE
T ss_pred CCEEEEEEEEeeCCCCCCc--CCCCC-CceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEc
Confidence 3789999999999998642 15788 999999984 2 378999999999999999999999766679999999 9
Q ss_pred CCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceec
Q 046822 671 NCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLML 714 (971)
Q Consensus 671 ~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~ 714 (971)
+|.++ +|++||++.|+|+++..+....+||+|...
T Consensus 106 ~d~~~---------~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 106 YGRMD---------HKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp CSTTC---------SSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCCCC---------CCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 99775 899999999999999877778999999853
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=7e-16 Score=149.72 Aligned_cols=110 Identities=25% Similarity=0.351 Sum_probs=91.1
Q ss_pred CCeEEEEEEEEeeCCCCC-CC------CCCCCcEEEEEEc---CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEE
Q 046822 4 GKEKLVVEVIAAHNLMPK-DG------EGSSSPFVEVEFE---KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIE 73 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~-d~------~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~ 73 (971)
..+.|.|+|++|+||+.+ +. .|.+||||++.+. .+.++|+++++++||+|||+|.|.+... ++....|.
T Consensus 24 ~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~l~~~~L~ 102 (147)
T 2enp_A 24 LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFL-EAQRRTLL 102 (147)
T ss_dssp TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHH-HHHHSEEE
T ss_pred CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChH-HhccCEEE
Confidence 457899999999999984 43 3589999999997 3578999999999999999999997642 22336899
Q ss_pred EEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 74 VNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 74 i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
|+|||++.++ ++++||++.|+|.++.... ....|++|++++
T Consensus 103 ~~V~d~d~~~-~~~~iG~~~i~l~~l~~~~--~~~~w~~L~~~~ 143 (147)
T 2enp_A 103 LTVVDFDKFS-RHCVIGKVSVPLCEVDLVK--GGHWWKALIPSG 143 (147)
T ss_dssp EEEECCSTTC-CSCCCEEEEEETTTSCTTT--CCCEEECCBCCC
T ss_pred EEEEECCCCc-CCcEEEEEEEechhcCCCC--CccEEEEeecCC
Confidence 9999999987 7899999999999996432 235899998764
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-16 Score=151.43 Aligned_cols=103 Identities=28% Similarity=0.360 Sum_probs=89.2
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC--------------EEEeeecccCCCCCeecceeEEE-ee--C-
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ--------------KWVRTRTVVDSLSPKWNEQYTWE-VF--D- 659 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~--------------~~~rT~~~~~~~nP~Wne~~~~~-v~--~- 659 (971)
|.|.|+|++|+||++++. .|.+ ||||++.+++ ..+||+++++++||.|||.|.|. +. +
T Consensus 18 ~~L~V~v~~a~~L~~~d~---~g~~-Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l 93 (142)
T 1rh8_A 18 GNLIIHILQARNLVPRDN---NGYS-DPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQL 93 (142)
T ss_dssp TEEEEEEEEEESCCCCSS---SSCS-CCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHH
T ss_pred CEEEEEEEEecCCCCCCC---CCCC-CceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHc
Confidence 689999999999998654 7888 9999999964 24899999999999999999997 54 2
Q ss_pred CCcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 660 PCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 660 ~~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
....|.|+|||+|.++ +|++||++.|+|+++..+.....||+|..
T Consensus 94 ~~~~l~i~V~d~d~~~---------~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 138 (142)
T 1rh8_A 94 MKKTLEVTVWDYDRFS---------SNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138 (142)
T ss_dssp TTCEEEEEEEEECSSS---------CEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred cCCEEEEEEEECCCCC---------CCceEEEEEEeccccccCCCCCeEEECCc
Confidence 3569999999999775 89999999999999976666689999974
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.5e-15 Score=147.16 Aligned_cols=103 Identities=21% Similarity=0.323 Sum_probs=86.0
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-----EEEeeecccCCCCCeecceeEEEeeCC---CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-----KWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-----~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i 666 (971)
+..|.|.|+|++|+||+.++. .|.+ ||||++.+++ ..+||+++++++||.|||.|.|.+... ...|.|
T Consensus 34 ~~~~~L~V~v~~a~~L~~~d~---~g~~-DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i 109 (166)
T 2cm5_A 34 TQQGGLIVGIIRCVHLAAMDA---NGYS-DPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDI 109 (166)
T ss_dssp TTTTEEEEEEEEEESCCCCST---TSCC-CEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEE
T ss_pred CCCCEEEEEEEEeECCCCccC---CCCC-CcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEE
Confidence 345799999999999998654 7888 9999999964 679999999999999999999999752 349999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
+|||++.++ +|++||++.|+|.++..+ ..+||+|.
T Consensus 110 ~V~d~d~~~---------~~~~iG~~~i~l~~~~~~--~~~W~~l~ 144 (166)
T 2cm5_A 110 SVWDYDIGK---------SNDYIGGCQLGISAKGER--LKHWYECL 144 (166)
T ss_dssp EEEECCSSS---------CCEEEEEEEEETTCCHHH--HHHHHHHH
T ss_pred EEEECCCCC---------CCcEEEeEEEecccCCch--hHHHHHHH
Confidence 999999775 899999999999986432 24555554
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-15 Score=141.27 Aligned_cols=87 Identities=23% Similarity=0.336 Sum_probs=75.0
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeeccc-CCCCCeecceeEEEeeCCCcEEEEEEEeCCCC
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVV-DSLSPKWNEQYTWEVFDPCTVITVGVFDNCSL 674 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~-~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~ 674 (971)
.+|.|.|+|++|++|+. .|++ ||||+++ + +..+|++++ +++||.|||.|.|.+.++...|.|+|||+| +
T Consensus 3 ~~~~L~V~V~~A~~l~~------~g~~-DPYv~v~-~-~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~ 72 (131)
T 2cjt_A 3 VMSLLCVGVKKAKFDGA------QEKF-NTYVTLK-V-QNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-L 72 (131)
T ss_dssp CCEEEEEEEEEEECSSC------GGGC-EEEEEEE-E-TTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-S
T ss_pred cceEEEEEEEEeECCCC------CCCc-CeEEEEE-e-cCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-C
Confidence 46899999999999853 5788 9999999 3 345666665 699999999999999988889999999999 6
Q ss_pred CccccCCCCCCCceeEEEEEEcccccC
Q 046822 675 DKNIINNSGGRDSRIGKVRIRLSTLES 701 (971)
Q Consensus 675 ~~~~~~~~~~~d~~iG~~~i~l~~l~~ 701 (971)
+ +|++||++.|+|+++..
T Consensus 73 ~---------~dd~iG~~~i~l~~l~~ 90 (131)
T 2cjt_A 73 I---------WDTMVGTVWIPLRTIRQ 90 (131)
T ss_dssp S---------CEEEEEEEEEEGGGSCB
T ss_pred C---------CCCeEEEEEEEHHHhhh
Confidence 5 89999999999999854
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-14 Score=134.92 Aligned_cols=124 Identities=16% Similarity=0.206 Sum_probs=104.3
Q ss_pred CCCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeeccc-CCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 2 GDGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKY-KDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 2 ~~~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
..+.+-|+|.|.+|.+|+ |.+|||+++.+.+.+++|++++ ++.||+|||.|+|.+.. ....+..|.|.|||++
T Consensus 17 ~~~~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~-~ld~~e~L~v~V~d~~ 90 (144)
T 3l9b_A 17 RGSHMALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVAS-SIDRNEVLEIQIFNYS 90 (144)
T ss_dssp --CCEEEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESS-CCCTTCEEEEEEEEEC
T ss_pred CCCcEEEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCC-CCCCCCEEEEEEEECc
Confidence 355678999999999998 5899999999999999999998 69999999999999986 4567789999999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeec
Q 046822 81 RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTT 135 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~ 135 (971)
+++ ++++||++.++|.++...+.-. -+.+|.+.+.+ ...++|.+.+.|.+.
T Consensus 91 ~v~-~nrlIG~~~i~Lq~lv~~~~l~--l~~~LvD~n~~-~~~a~I~l~l~Y~pp 141 (144)
T 3l9b_A 91 KVF-SNKLIGTFRMVLQKVVEENRVE--VSDTLIDDNNA-IIKTSLSMEVRYQAA 141 (144)
T ss_dssp TTS-CCEEEEEEEEESHHHHHHSEEE--EEEEEECTTSC-EEEEEEEEEEEEEET
T ss_pred ccc-CCCEEEEEEEEhHHhccCCeEE--EeecccCCCCC-ccccEEEEEEEecCC
Confidence 998 8999999999999997654322 34677765543 466999999999763
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-15 Score=146.97 Aligned_cols=104 Identities=17% Similarity=0.159 Sum_probs=82.8
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE--CCE---EEeeecccCCCCCeecceeEEEeeCCC---cEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY--GQK---WVRTRTVVDSLSPKWNEQYTWEVFDPC---TVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~--g~~---~~rT~~~~~~~nP~Wne~~~~~v~~~~---~~l~i 666 (971)
+..+.|.|+|++|+||+.++. .|++ ||||++.+ ++. .+||+++++++||.|||.|.|.+.... ..|.|
T Consensus 27 ~~~~~L~v~v~~a~~L~~~d~---~g~~-dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v 102 (153)
T 1w15_A 27 STTNTLTVVVLKARHLPKSDV---SGLS-DPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEF 102 (153)
T ss_dssp TTTTEEEEEEEEEESCC---------CC-CEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEE
T ss_pred CCCCEEEEEEEEeECCCCcCC---CCCC-CeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEE
Confidence 345799999999999998654 7888 99999999 443 679999999999999999999987642 58999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
+|||+|.++ +|++||++.|+|++. +..+.+||+|..
T Consensus 103 ~V~d~d~~~---------~~~~lG~~~i~l~~~--~~~~~~W~~l~~ 138 (153)
T 1w15_A 103 LVLDSERGS---------RNEVIGRLVLGATAE--GSGGGHWKEICD 138 (153)
T ss_dssp EEEECCTTS---------CCEEEEEEEESTTCC--SHHHHHHHHHHH
T ss_pred EEEeCCCCC---------CCcEEEEEEECCCCC--chHHHHHHHHHh
Confidence 999999775 899999999999983 333467777664
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=142.67 Aligned_cols=118 Identities=21% Similarity=0.304 Sum_probs=90.0
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeeccc-CCCCCeecceeEEEeeCCCcEEEEEEEeCCCC
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVV-DSLSPKWNEQYTWEVFDPCTVITVGVFDNCSL 674 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~-~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~ 674 (971)
.+|.|.|+|++|++|+. .|++ ||||+++ + +.+||++++ +++||.|||.|.|.+.+....|.|+|||+| +
T Consensus 12 ~~~~L~V~V~~A~~l~~------~g~~-DPYV~v~-~-~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~ 81 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDGA------QEKF-NTYVTLK-V-QNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-L 81 (167)
T ss_dssp CCCEEEEEEEEEECSSC------GGGC-EEEEEEE-E-TTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-S
T ss_pred ceEEEEEEEEEEECCCC------CCCC-CeEEEEE-e-cceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-C
Confidence 46899999999998852 5788 9999999 3 346777775 699999999999999988889999999999 6
Q ss_pred CccccCCCCCCCceeEEEEEEcccccCCc------eEeeeEeceecCCC--Cc--ccceEEEEEEEEe
Q 046822 675 DKNIINNSGGRDSRIGKVRIRLSTLESDR------VYTHSYPLLMLHPS--GV--KKMGELHLAVRFS 732 (971)
Q Consensus 675 ~~~~~~~~~~~d~~iG~~~i~l~~l~~~~------~~~~~~~L~~~~~~--g~--~~~G~i~l~~~f~ 732 (971)
+ +|++||++.|+|+++.... ....||.+...+.+ |. ...|.++++++|.
T Consensus 82 ~---------~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e 140 (167)
T 2cjs_A 82 I---------WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE 140 (167)
T ss_dssp S---------CCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE
T ss_pred C---------CCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEee
Confidence 5 8999999999999985422 23345554432221 11 1245678888876
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.1e-14 Score=139.28 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=86.9
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeeccc-CCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKY-KDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRS 82 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~ 82 (971)
..+.|+|+|++|++|. ..|.+||||+++ .+..+|++++ +++||.|||+|.|.+.... ..|.|+|||++ +
T Consensus 12 ~~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~----~~L~~~V~D~d-~ 81 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLD----LGLTVEVWNKG-L 81 (167)
T ss_dssp CCCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTT----SEEEEEEEECC-S
T ss_pred ceEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCC----CEEEEEEEECC-C
Confidence 3569999999999884 268899999999 3445666654 7999999999999998654 67999999999 6
Q ss_pred CCCCceeEEEEEeCccccccCCcc----cceEEEeEeCCCC-----CeeeeEEEEEEEee
Q 046822 83 SNSRNFLGKVRAPCSQLCKNEGEA----TAQLYTLEKRSLF-----SHIRGEISLKLFVS 133 (971)
Q Consensus 83 ~~~d~~lG~~~i~l~~l~~~~~~~----~~~w~~L~~~~~~-----~~~~G~i~l~~~~~ 133 (971)
+ +|++||++.|+|.++....... ...||.+..+..+ ....|.+.+++.+.
T Consensus 82 ~-~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e 140 (167)
T 2cjs_A 82 I-WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE 140 (167)
T ss_dssp S-CCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE
T ss_pred C-CCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEee
Confidence 6 7999999999999986543222 2234444432211 12345566776664
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.4e-14 Score=163.73 Aligned_cols=115 Identities=18% Similarity=0.217 Sum_probs=98.6
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeC--CCcEEEEEEEeCC
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFD--PCTVITVGVFDNC 672 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~--~~~~l~i~V~D~~ 672 (971)
...|.|.|+|++|+||+. | ..|++ ||||+++++++.+||+++++++||+|||.|.|.+.+ ....|.|+|||+|
T Consensus 391 ~~~~~L~V~V~~A~~L~~-D---~~g~s-DPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D 465 (540)
T 3nsj_A 391 RGLAHLVVSNFRAEHLWG-D---YTTAT-DAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDAD 465 (540)
T ss_dssp TTEEEEEEEEEEEESCCC-S---SCSCC-CEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECC
T ss_pred CcccEEEEEEEEccCCCc-c---cCCCc-CeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECC
Confidence 458999999999999986 4 47899 999999999999999999999999999999999753 5668999999999
Q ss_pred CCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEeecch
Q 046822 673 SLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSCANL 736 (971)
Q Consensus 673 ~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~~ 736 (971)
.++ +||+||++.++|.. | ....|++|. .|.|++.+..+|...
T Consensus 466 ~~~---------~dD~LG~~~~~L~~---g-~~~~~~~l~---------~G~l~~~~~~~c~p~ 507 (540)
T 3nsj_A 466 YGW---------DDDLLGSCDRSPHS---G-FHEVTCELN---------HGRVKFSYHAKCLPH 507 (540)
T ss_dssp SSS---------CCEEEEEEEECCCS---E-EEEEEEECS---------SSEEEEEEEEEECTT
T ss_pred CCC---------CCCEEEEEEEEeeC---C-cEEEEEEcC---------CeEEEEEEEEEECCC
Confidence 765 89999999999883 3 346788763 399999999987543
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.8e-14 Score=128.69 Aligned_cols=115 Identities=17% Similarity=0.257 Sum_probs=98.7
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeeccc-CCCCCeecceeEEEeeC---CCcEEEEEEEeCCCC
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVV-DSLSPKWNEQYTWEVFD---PCTVITVGVFDNCSL 674 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~-~~~nP~Wne~~~~~v~~---~~~~l~i~V~D~~~~ 674 (971)
.|+|.|.+|+||+ |++ |||+.+.+-+.+++|+++. .+.||.|||.|+|++.. ....|.|+|+|++++
T Consensus 22 sL~V~l~~a~~Lp--------g~~-Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v 92 (144)
T 3l9b_A 22 ALIVHLKTVSELR--------GRA-DRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKV 92 (144)
T ss_dssp EEEEEEEEEESCC--------SCE-EEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTT
T ss_pred EEEEEEEEecCCC--------CCC-CCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccc
Confidence 6899999999996 467 9999999999999999998 59999999999999984 455999999999988
Q ss_pred CccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEee
Q 046822 675 DKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSC 733 (971)
Q Consensus 675 ~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 733 (971)
+ ++.+||++.|+|.++..+.....+-+|.+.+.+ .-.++|.|+++|..
T Consensus 93 ~---------~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~--~~~a~I~l~l~Y~p 140 (144)
T 3l9b_A 93 F---------SNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNA--IIKTSLSMEVRYQA 140 (144)
T ss_dssp S---------CCEEEEEEEEESHHHHHHSEEEEEEEEECTTSC--EEEEEEEEEEEEEE
T ss_pred c---------CCCEEEEEEEEhHHhccCCeEEEeecccCCCCC--ccccEEEEEEEecC
Confidence 7 999999999999999776666667788765542 22488999998874
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-14 Score=166.29 Aligned_cols=119 Identities=27% Similarity=0.452 Sum_probs=102.3
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCC-cEEEEEEEeCCC
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPC-TVITVGVFDNCS 673 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~-~~l~i~V~D~~~ 673 (971)
...|.|.|+|++|+||++.+ ..|++ ||||++.+++..++|+++++++||.|||.|.|.+..+. ..|.|+|||+|.
T Consensus 384 ~~~~~l~v~v~~a~~L~~~d---~~~~s-dpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~ 459 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKACK---PNGKS-NPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQ 459 (510)
T ss_dssp --CEEEEEEEEEEESCCCCS---TTSCC-CEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCS
T ss_pred CCCceEEEEeceeecCCCCC---CCCCC-CeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC
Confidence 56799999999999998864 47899 99999999999999999999999999999999998766 489999999997
Q ss_pred CCccccCCCCCCCceeEEEEEEcccccCCce----EeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 674 LDKNIINNSGGRDSRIGKVRIRLSTLESDRV----YTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 674 ~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~----~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
++ +|++||++.++|+++..+.. ...|++|.. +..|+|++++++.
T Consensus 460 ~~---------~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~------~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 460 FS---------PDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHE------VPTGEVWVRFDLQ 507 (510)
T ss_dssp SS---------SCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBS------SSSCEEEEEEEEE
T ss_pred CC---------CCCceEEEEEEHHHhccccCCCCceeeeecCCC------CCCceEEEEEEEE
Confidence 76 89999999999999975433 568898863 2359999988875
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4.2e-13 Score=159.31 Aligned_cols=123 Identities=21% Similarity=0.246 Sum_probs=103.7
Q ss_pred CCCCeEEEEEEEEeeCCCCCCC--CCCCCcEEEEEEcC-----eEEEeecccCC-CCCeeeeeeEEecCCCCCCCcceEE
Q 046822 2 GDGKEKLVVEVIAAHNLMPKDG--EGSSSPFVEVEFEK-----QILRTQVKYKD-LNPIWNEKLVFDVPDIAELPYKHIE 73 (971)
Q Consensus 2 ~~~~~~L~V~V~~a~~L~~~d~--~g~~dPyv~v~~~~-----~~~~T~~~~~t-~nP~wne~f~f~v~~~~~l~~~~L~ 73 (971)
+...+.|.|+|++|++|+.++. .|.+||||+|.+.+ ++++|++++++ +||+|||+|.|.+..++. ..|+
T Consensus 493 ~~~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el---~~L~ 569 (624)
T 1djx_A 493 WWRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDL---ALVR 569 (624)
T ss_dssp TCCCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGG---CEEE
T ss_pred CccceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCC---CEEE
Confidence 3467899999999999999884 68999999999954 68999999987 999999999999986653 6899
Q ss_pred EEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEee
Q 046822 74 VNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVS 133 (971)
Q Consensus 74 i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 133 (971)
|.|||++.++ +|++||++.+++..+.. + .+|++|.......-..|.|.|++.+.
T Consensus 570 ~~V~D~D~~~-~dd~iG~~~ipl~~L~~-G----~r~v~L~d~~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 570 FMVEDYDSSS-KNDFIGQSTIPWNSLKQ-G----YRHVHLLSKNGDQHPSATLFVKISIQ 623 (624)
T ss_dssp EEEEECCSSS-CCEEEEEEEEEGGGBCC-E----EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred EEEEEcCCCC-CCceeEEEEEEHHHcCC-C----cEEEeCCCCCcCCCCceEEEEEEEEE
Confidence 9999999986 79999999999999854 1 26899987654434568888888764
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=158.60 Aligned_cols=114 Identities=20% Similarity=0.299 Sum_probs=96.0
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCC
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSN 84 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~ 84 (971)
.+.|.|+|++|++|+. |..|.+||||+|.++++.++|+++++++||+|||+|.|.+.... ....|.|+|||+|..+
T Consensus 393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~--~~~~L~~~V~D~D~~~- 468 (540)
T 3nsj_A 393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLS--TGGPLRVQVWDADYGW- 468 (540)
T ss_dssp EEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETT--TCCCEEEEEEECCSSS-
T ss_pred ccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCC--CCCEEEEEEEECCCCC-
Confidence 6799999999999998 98999999999999999999999999999999999999864311 1378999999999986
Q ss_pred CCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeecc
Q 046822 85 SRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTTE 136 (971)
Q Consensus 85 ~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 136 (971)
+|||||++.++|.. + . ...|++|. .|+|.+++.+.=.+
T Consensus 469 ~dD~LG~~~~~L~~----g-~-~~~~~~l~--------~G~l~~~~~~~c~p 506 (540)
T 3nsj_A 469 DDDLLGSCDRSPHS----G-F-HEVTCELN--------HGRVKFSYHAKCLP 506 (540)
T ss_dssp CCEEEEEEEECCCS----E-E-EEEEEECS--------SSEEEEEEEEEECT
T ss_pred CCCEEEEEEEEeeC----C-c-EEEEEEcC--------CeEEEEEEEEEECC
Confidence 78999999999883 2 2 34688764 38888888765433
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.44 E-value=6.1e-13 Score=157.97 Aligned_cols=123 Identities=17% Similarity=0.244 Sum_probs=101.6
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-C----CEEEeeecccCC-CCCeecceeEEEeeCCC-cEEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-G----QKWVRTRTVVDS-LSPKWNEQYTWEVFDPC-TVITVG 667 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-g----~~~~rT~~~~~~-~nP~Wne~~~~~v~~~~-~~l~i~ 667 (971)
...+.|.|+|++|++|+.++. +..|.+ ||||++.+ | ....||++++++ +||.|||.|.|.+..+. ..|.|+
T Consensus 494 ~~~~~L~V~Vi~A~~L~~~d~-~~~~~~-DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~ 571 (624)
T 1djx_A 494 WRPERLRVRIISGQQLPKVNK-NKNSIV-DPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFM 571 (624)
T ss_dssp CCCEEEEEEEEEEESCCCCSS-CSSSCC-CEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEE
T ss_pred ccceEEEEEEEEcCCCCcccc-cccCCC-CcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEE
Confidence 356899999999999998652 125788 99999999 4 267999999998 99999999999998765 589999
Q ss_pred EEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 668 VFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
|||+|.++ +|++||++.|+|..|..|. +|+||.+...... ..|.|.+.++|+
T Consensus 572 V~D~D~~~---------~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~~~-~~~~L~v~i~~~ 623 (624)
T 1djx_A 572 VEDYDSSS---------KNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQH-PSATLFVKISIQ 623 (624)
T ss_dssp EEECCSSS---------CCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEE-EEEEEEEEEEEE
T ss_pred EEEcCCCC---------CCceeEEEEEEHHHcCCCc---EEEeCCCCCcCCC-CceEEEEEEEEE
Confidence 99999775 8999999999999998764 6899986543221 358888888775
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.44 E-value=4.3e-13 Score=158.18 Aligned_cols=123 Identities=23% Similarity=0.345 Sum_probs=105.9
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECCeEEEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEEE
Q 046822 425 PKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISV 504 (971)
Q Consensus 425 p~l~~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V 504 (971)
...+.|+|+|++|++|+.+|.. |.+||||++.+++++++|+++ ++++||.|||.|.|.+..+....|.|+|
T Consensus 384 ~~~~~l~v~v~~a~~L~~~d~~----~~sdpyv~v~~~~~~~~T~~~-----~~t~nP~w~e~f~f~~~~~~~~~l~~~v 454 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKACKPN----GKSNPYCEISMGSQSYTTRTI-----QDTLNPKWNFNCQFFIKDLYQDVLCLTL 454 (510)
T ss_dssp --CEEEEEEEEEEESCCCCSTT----SCCCEEEEEEETTEEEECCCC-----SSCSSCEEEEEEEEEESCTTTCEEEEEE
T ss_pred CCCceEEEEeceeecCCCCCCC----CCCCeEEEEEECCeeccCCcc-----CCCCCCccCceEEEEecCCCCCEEEEEE
Confidence 3566899999999999999988 899999999999999999999 8999999999999999888778999999
Q ss_pred EeCcCCCCCceeEEEEEeccccccccccccccceeEEcccCCCCCCCcceeeeeeeeeEEEEEc
Q 046822 505 EDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSL 568 (971)
Q Consensus 505 ~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~g~i~l~l~l 568 (971)
||+|..+++++||++.++|.++............|+.|.+.. .|++++++.+
T Consensus 455 ~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~------------~G~i~l~~~l 506 (510)
T 3jzy_A 455 FDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVP------------TGEVWVRFDL 506 (510)
T ss_dssp EECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSS------------SCEEEEEEEE
T ss_pred EeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCCC------------CceEEEEEEE
Confidence 999988899999999999999876533223357899998765 5778777654
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-14 Score=165.62 Aligned_cols=124 Identities=19% Similarity=0.318 Sum_probs=21.5
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE-EEeeecccCC---CCCeecceeEEEeeCCCcEEEEEEEeC
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-WVRTRTVVDS---LSPKWNEQYTWEVFDPCTVITVGVFDN 671 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-~~rT~~~~~~---~nP~Wne~~~~~v~~~~~~l~i~V~D~ 671 (971)
..|.|+|+|++|+||++++ ||||++.++++ +.||++++++ +||.|||.|.|.+......|.|+|||+
T Consensus 9 ~~~~L~V~VieAk~L~~~d---------dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~ 79 (483)
T 3bxj_A 9 VDNVLKLWIIEARELPPKK---------RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRD 79 (483)
T ss_dssp EEECC------------------------------------------------------CCEECC---------------
T ss_pred eccEEEEEEEEcCCcCCCC---------CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEec
Confidence 4578999999999998642 89999999865 6799999999 999999999999766667999999994
Q ss_pred -CCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCC---------------------CCcccceEEEEEE
Q 046822 672 -CSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHP---------------------SGVKKMGELHLAV 729 (971)
Q Consensus 672 -~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~---------------------~g~~~~G~i~l~~ 729 (971)
|... ..++|++||++.|++.++..+...+.||+|...+. ++.+..|.|+|.+
T Consensus 80 ~d~~~------~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v 153 (483)
T 3bxj_A 80 SDKKR------KKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKA 153 (483)
T ss_dssp ---------------------------------CCEECC--------------------------------------CEE
T ss_pred CCccc------cCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEE
Confidence 4200 12389999999999999988777889999965432 1223469999999
Q ss_pred EEeec
Q 046822 730 RFSCA 734 (971)
Q Consensus 730 ~f~~~ 734 (971)
+|+..
T Consensus 154 ~~~~~ 158 (483)
T 3bxj_A 154 RYQTM 158 (483)
T ss_dssp EEEEC
T ss_pred Eeeee
Confidence 99853
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-12 Score=155.86 Aligned_cols=107 Identities=21% Similarity=0.323 Sum_probs=92.9
Q ss_pred CCCeEEEEEEEEeeCCCC---CCCCCCCCcEEEEEEcC---eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEE
Q 046822 3 DGKEKLVVEVIAAHNLMP---KDGEGSSSPFVEVEFEK---QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNV 76 (971)
Q Consensus 3 ~~~~~L~V~V~~a~~L~~---~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V 76 (971)
...+.|.|+|++|++|+. +|..|.+||||+|.+.+ ++++|+++++++||+|||+|.|.+.... ...|.|+|
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~---~~~L~~~V 91 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ---ENVLEITL 91 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTS---CCBCEEEE
T ss_pred CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCC---CCEEEEEE
Confidence 346899999999999998 88889999999999984 6899999999999999999999998643 37899999
Q ss_pred EeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeC
Q 046822 77 FNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116 (971)
Q Consensus 77 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~ 116 (971)
||++.++ |++||++.|++.++.. +.....|++|.+.
T Consensus 92 ~D~D~~~--ddfIG~v~I~L~~L~~--g~~~~~w~~L~~~ 127 (749)
T 1cjy_A 92 MDANYVM--DETLGTATFTVSSMKV--GEKKEVPFIFNQV 127 (749)
T ss_dssp EECCSSS--CEEEEEECCBSTTSCT--TCCCCEEEEETTT
T ss_pred EECCCCC--CceeEEEEEEHHHcCC--CCceEEEEecCCC
Confidence 9999975 9999999999999853 2334589999754
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-12 Score=155.43 Aligned_cols=104 Identities=16% Similarity=0.248 Sum_probs=92.6
Q ss_pred CceeEEEEEEEeeeCCCC---CCccCCCCcccCcEEEEEEC---CEEEeeecccCCCCCeecceeEEEeeC-CCcEEEEE
Q 046822 595 PHIGVLEMGILGATGLMP---MKFKEGKGGSVDAYCVAKYG---QKWVRTRTVVDSLSPKWNEQYTWEVFD-PCTVITVG 667 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~---~~~~~~~g~s~dpy~~~~~g---~~~~rT~~~~~~~nP~Wne~~~~~v~~-~~~~l~i~ 667 (971)
.+.|.|+|+|++|++|+. +|. .|++ ||||+++++ ...+||+++++++||+|||.|.|.+.. ....|+|+
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~---~g~s-DPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~ 90 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDM---LDTP-DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEIT 90 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHH---HCCC-CEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEE
T ss_pred CCccEEEEEEEEEECCCCccccCC---CCCc-CeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEE
Confidence 567999999999999987 543 6888 999999997 467999999999999999999999987 45599999
Q ss_pred EEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 668 VFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
|||+|.+ + |++||++.|+|.+|..+.....|++|.
T Consensus 91 V~D~D~~---------~-ddfIG~v~I~L~~L~~g~~~~~w~~L~ 125 (749)
T 1cjy_A 91 LMDANYV---------M-DETLGTATFTVSSMKVGEKKEVPFIFN 125 (749)
T ss_dssp EEECCSS---------S-CEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred EEECCCC---------C-CceeEEEEEEHHHcCCCCceEEEEecC
Confidence 9999964 4 899999999999998887778999996
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.1e-13 Score=154.17 Aligned_cols=120 Identities=19% Similarity=0.290 Sum_probs=19.9
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe-EEEeecccCC---CCCeeeeeeEEecCCCCCCCcceEEEEEEeC-
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-ILRTQVKYKD---LNPIWNEKLVFDVPDIAELPYKHIEVNVFNE- 79 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t---~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~- 79 (971)
.+.|+|+|++|++|+++| ||||++.++++ ..||+++++| +||.|||+|.|.+.... ..|.|.|||.
T Consensus 10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~----~~L~v~V~d~~ 80 (483)
T 3bxj_A 10 DNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAV----RALRLHLYRDS 80 (483)
T ss_dssp EECC--------------------------------------------------CCEECC--------------------
T ss_pred ccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCc----cEEEEEEEecC
Confidence 467999999999999876 99999999876 6799999999 99999999999975332 7899999995
Q ss_pred C---CCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCC----------------------CCeeeeEEEEEEEeee
Q 046822 80 R---RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSL----------------------FSHIRGEISLKLFVST 134 (971)
Q Consensus 80 ~---~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~----------------------~~~~~G~i~l~~~~~~ 134 (971)
+ +.+ +|++||++.|++.++... .....||+|..... .....|.|++++.|..
T Consensus 81 d~~~~~~-~d~~lG~v~i~l~~l~~~--~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~ 157 (483)
T 3bxj_A 81 DKKRKKD-KAGYVGLVTVPVATLAGR--HFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQT 157 (483)
T ss_dssp -----------------------------CCEECC--------------------------------------CEEEEEE
T ss_pred CccccCC-CCceEEEEEEEHHHhcCC--CCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeee
Confidence 4 244 799999999999998642 23468999954321 1134699999999876
Q ss_pred cc
Q 046822 135 TE 136 (971)
Q Consensus 135 ~~ 136 (971)
..
T Consensus 158 ~~ 159 (483)
T 3bxj_A 158 MS 159 (483)
T ss_dssp CC
T ss_pred ee
Confidence 54
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.1e-10 Score=137.62 Aligned_cols=126 Identities=17% Similarity=0.234 Sum_probs=95.3
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC------EEEeeecccC-CCCCeecc-eeEEE-eeCCC-cEEEE
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ------KWVRTRTVVD-SLSPKWNE-QYTWE-VFDPC-TVITV 666 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~------~~~rT~~~~~-~~nP~Wne-~~~~~-v~~~~-~~l~i 666 (971)
...|.|+|++|++|+. .++ ||||++.+.+ ..+||+++.+ ++||+||| .|.|. |..+. ..|.|
T Consensus 724 ~~~L~V~Visaq~L~~-------~~~-DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf 795 (885)
T 3ohm_B 724 ANALRVKVISGQFLSD-------RKV-GIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRI 795 (885)
T ss_dssp CEEEEEEEEEEESCCS-------SCC-CEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEE
T ss_pred ceEEEEEEEEeccCcc-------cCC-CcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEE
Confidence 3489999999999974 246 9999999843 3589999976 59999999 69998 76554 48999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEee---cchhHHHHhh
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSC---ANLVNMLHMY 743 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~---~~~~~~~~~~ 743 (971)
+|||+| |++||++.|||+.|..|. +++||.+...... ..|.|.+.+.+.. ....+++.+-
T Consensus 796 ~V~D~d-------------ddfiG~~~lpL~~L~~Gy---R~vpL~~~~g~~l-~~atLfv~i~~~~~~~~~~~~~~~~l 858 (885)
T 3ohm_B 796 AAFEEG-------------GKFVGHRILPVSAIRSGY---HYVCLRNEANQPL-CLPALLIYTEASDYIPDDHQDYAEAL 858 (885)
T ss_dssp EEEETT-------------TEEEEEEEEETTTCCCEE---EEEEEECTTSCEE-EEEEEEEEEEEEECCCGGGHHHHHHH
T ss_pred EEEcCC-------------ccEEeeEEEEHHHcCCCc---eEEEecCCCCCcc-CceEEEEEEEEEecCCccHHHHHHHH
Confidence 999974 689999999999998875 5689986543222 3588998888773 2333444444
Q ss_pred cCCC
Q 046822 744 AMPL 747 (971)
Q Consensus 744 ~~p~ 747 (971)
..|.
T Consensus 859 ~~p~ 862 (885)
T 3ohm_B 859 INPI 862 (885)
T ss_dssp HCHH
T ss_pred hChH
Confidence 4443
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.08 E-value=5e-10 Score=135.18 Aligned_cols=111 Identities=17% Similarity=0.266 Sum_probs=90.0
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-------EEEeeecccC-CCCCeecce-eEEE-eeCCC-cEEE
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-------KWVRTRTVVD-SLSPKWNEQ-YTWE-VFDPC-TVIT 665 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-------~~~rT~~~~~-~~nP~Wne~-~~~~-v~~~~-~~l~ 665 (971)
.+.|.|+|++|++|+. .++ ||||++.+.+ +.+||+++.+ ++||+|||. |.|. |..+. ..|.
T Consensus 649 ~~~L~V~Visaq~L~~-------~~~-DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lr 720 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSD-------KQI-SSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVR 720 (816)
T ss_dssp CEEEEEEEEEEECCCS-------SCC-CEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEE
T ss_pred ceEEEEEEEEcccCCC-------CCC-CCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEE
Confidence 4789999999999974 246 9999999843 6789999986 599999997 9998 76654 4899
Q ss_pred EEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 666 VGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 666 i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
|+|||++ +++||++.|||+.|..|. +++||.+..+... ..++|.+.+.+.
T Consensus 721 f~V~D~d-------------ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g~~~-~~atLfv~i~~~ 770 (816)
T 3qr0_A 721 IIVSEEN-------------GKFIGHRVMPLDGIKPGY---RHVPLRNESNRPL-GLASVFAHIVAK 770 (816)
T ss_dssp EEEEETT-------------SCEEEEEEEESTTCCCEE---EEEEEECTTSCEE-EEEEEEEEEEEE
T ss_pred EEEEecC-------------CCeeeEEEEEHHHcCCcc---eEEEEeCCCCCCC-CceEEEEEEEEE
Confidence 9999974 689999999999999875 5799986543222 237888887776
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-10 Score=139.96 Aligned_cols=106 Identities=27% Similarity=0.473 Sum_probs=91.9
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc-----CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE-----KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
.+.|.|+|++|++|.++|..|.+||||++.+. ..+++|+++++++||.|||+|.|.+...+ ....|.|+|||+
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~--~~~~L~v~v~d~ 248 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESD--KDRRLSVEIWDW 248 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTT--TTCEEEEEEEEC
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCC--ccceeeeEEeec
Confidence 56899999999999999999999999999993 45789999999999999999999987543 235799999999
Q ss_pred CCCCCCCceeEEEEEeCccccccCCcccceEEEeEeC
Q 046822 80 RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~ 116 (971)
+.++ +|++||++.+++.++.... ...|+.|...
T Consensus 249 d~~~-~dd~iG~~~i~l~~l~~~~---~~~w~~Lls~ 281 (674)
T 3pfq_A 249 DLTS-RNDFMGSLSFGISELQKAG---VDGWFKLLSQ 281 (674)
T ss_dssp CSSS-CCEECCBCCCBTTHHHHCC---EEEEEECBCT
T ss_pred cccc-ccccccccccchhhhccCC---cccceeeccc
Confidence 9987 8999999999999996533 2589999754
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.8e-10 Score=134.15 Aligned_cols=115 Identities=21% Similarity=0.266 Sum_probs=93.2
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC------eEEEeecccC-CCCCeeee-eeEEe-cCCCCCCCcceEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK------QILRTQVKYK-DLNPIWNE-KLVFD-VPDIAELPYKHIEV 74 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~-t~nP~wne-~f~f~-v~~~~~l~~~~L~i 74 (971)
....|.|+|++|++|+.+ .+||||+|.+.+ .+++|+++++ ++||+||| +|.|. +..++. ..|+|
T Consensus 723 ~~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pel---a~Lrf 795 (885)
T 3ohm_B 723 VANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTL---ASLRI 795 (885)
T ss_dssp CCEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGG---CEEEE
T ss_pred cceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCc---CEEEE
Confidence 356899999999999853 689999999975 2579999875 69999999 69998 665542 58999
Q ss_pred EEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeec
Q 046822 75 NVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTT 135 (971)
Q Consensus 75 ~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~ 135 (971)
.|||++ ++|||++.+||..|.. + .++++|.......-..|.|.|.+.+.+-
T Consensus 796 ~V~D~d-----ddfiG~~~lpL~~L~~-G----yR~vpL~~~~g~~l~~atLfv~i~~~~~ 846 (885)
T 3ohm_B 796 AAFEEG-----GKFVGHRILPVSAIRS-G----YHYVCLRNEANQPLCLPALLIYTEASDY 846 (885)
T ss_dssp EEEETT-----TEEEEEEEEETTTCCC-E----EEEEEEECTTSCEEEEEEEEEEEEEEEC
T ss_pred EEEcCC-----ccEEeeEEEEHHHcCC-C----ceEEEecCCCCCccCceEEEEEEEEEec
Confidence 999976 7899999999999853 1 2568998876554567999999988753
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-09 Score=131.10 Aligned_cols=115 Identities=20% Similarity=0.245 Sum_probs=93.5
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-------eEEEeecccC-CCCCeeeee-eEEe-cCCCCCCCcceEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-------QILRTQVKYK-DLNPIWNEK-LVFD-VPDIAELPYKHIE 73 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~~~-t~nP~wne~-f~f~-v~~~~~l~~~~L~ 73 (971)
..+.|.|+|++|++|+.+ .+||||+|.+.+ ++++|+++++ ++||+|||+ |.|. +..++. ..|+
T Consensus 648 ~~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pel---a~Lr 720 (816)
T 3qr0_A 648 VAGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDL---AVVR 720 (816)
T ss_dssp CCEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGG---CEEE
T ss_pred cceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCc---cEEE
Confidence 357899999999999853 689999999975 5789999875 699999998 9998 765542 5899
Q ss_pred EEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeec
Q 046822 74 VNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTT 135 (971)
Q Consensus 74 i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~ 135 (971)
|.|||++ ++|||++.+||..|.. + -++++|.......-..+.|.+.+.+.+.
T Consensus 721 f~V~D~d-----ddfiG~~~ipL~~L~~-G----yR~vpL~~~~g~~~~~atLfv~i~~~~~ 772 (816)
T 3qr0_A 721 IIVSEEN-----GKFIGHRVMPLDGIKP-G----YRHVPLRNESNRPLGLASVFAHIVAKDY 772 (816)
T ss_dssp EEEEETT-----SCEEEEEEEESTTCCC-E----EEEEEEECTTSCEEEEEEEEEEEEEEEC
T ss_pred EEEEecC-----CCeeeEEEEEHHHcCC-c----ceEEEEeCCCCCCCCceEEEEEEEEEec
Confidence 9999964 7899999999999854 1 2569998876554456899999888753
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.03 E-value=3.1e-10 Score=137.75 Aligned_cols=104 Identities=27% Similarity=0.417 Sum_probs=90.4
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-----CCEEEeeecccCCCCCeecceeEEEeeC--CCcEEEEEEE
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-----GQKWVRTRTVVDSLSPKWNEQYTWEVFD--PCTVITVGVF 669 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-----g~~~~rT~~~~~~~nP~Wne~~~~~v~~--~~~~l~i~V~ 669 (971)
.+.|.|.|++|++|++++. .|++ ||||++.+ +....+|+++++++||.|||.|.|.+.. ....|.|+||
T Consensus 171 ~~~L~V~v~~a~~L~~~d~---~g~s-DPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~ 246 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDP---NGLS-DPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIW 246 (674)
T ss_dssp SSEEEEEEEEEESCCCCST---TSSC-CEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEE
T ss_pred cceeeeeeecccccCCCCc---cccc-CcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEe
Confidence 3689999999999998754 8899 99999998 4457899999999999999999999874 3458999999
Q ss_pred eCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceec
Q 046822 670 DNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLML 714 (971)
Q Consensus 670 D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~ 714 (971)
|+|.++ +|++||.+.++|+++..+.. ..||+|...
T Consensus 247 d~d~~~---------~dd~iG~~~i~l~~l~~~~~-~~w~~Lls~ 281 (674)
T 3pfq_A 247 DWDLTS---------RNDFMGSLSFGISELQKAGV-DGWFKLLSQ 281 (674)
T ss_dssp ECCSSS---------CCEECCBCCCBTTHHHHCCE-EEEEECBCT
T ss_pred eccccc---------ccccccccccchhhhccCCc-ccceeeccc
Confidence 999776 89999999999999976554 889998754
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.02 E-value=9.4e-10 Score=133.74 Aligned_cols=113 Identities=19% Similarity=0.326 Sum_probs=89.2
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-C---C--EEEeee-cccC-CCCCeecc-eeEE-EeeCCCc-E
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-G---Q--KWVRTR-TVVD-SLSPKWNE-QYTW-EVFDPCT-V 663 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-g---~--~~~rT~-~~~~-~~nP~Wne-~~~~-~v~~~~~-~ 663 (971)
...|.|.|+|++|++|+. +++ ||||++.+ | . +++||+ ++++ ++||+||| .|.| .|..+.. .
T Consensus 675 ~~~~~L~V~Visa~~L~~-------~~~-DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~ 746 (799)
T 2zkm_X 675 VVATTLSITVISGQFLSE-------RSV-RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELAS 746 (799)
T ss_dssp TTCEEEEEEEEEEESCCS-------SCC-CEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCE
T ss_pred eeeeeEEEEEEeccccCc-------cCC-CcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccE
Confidence 346899999999999973 357 99999998 4 1 358999 8865 59999999 6999 8876543 8
Q ss_pred EEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 664 ITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 664 l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
|.|.|||+| +++||.+.|||+.|..|. +++||.+..+... ..+.|.+.++++
T Consensus 747 Lr~~V~D~d-------------~d~iG~~~ipl~~L~~G~---r~v~L~~~~g~~~-~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 747 LRVAVMEEG-------------NKFLGHRIIPINALNSGY---HHLCLHSESNMPL-TMPALFIFLEMK 798 (799)
T ss_dssp EEEEEEETT-------------TEEEEEEEEEGGGBCCEE---EEEEEECTTCCEE-EEEEEEEEEEEE
T ss_pred EEEEEEEeC-------------CCccceEeeehhhcCCCc---EEEeccCCCCCCC-CceEEEEEEEEE
Confidence 999999984 689999999999998764 6789986543222 247787777764
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-09 Score=131.12 Aligned_cols=114 Identities=25% Similarity=0.312 Sum_probs=90.2
Q ss_pred CCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC------eEEEee-ccc-CCCCCeeee-eeEE-ecCCCCCCCcceE
Q 046822 3 DGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK------QILRTQ-VKY-KDLNPIWNE-KLVF-DVPDIAELPYKHI 72 (971)
Q Consensus 3 ~~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~-~~~-~t~nP~wne-~f~f-~v~~~~~l~~~~L 72 (971)
...+.|.|+|++|++|+. +.+||||+|.+.+ ++++|+ +++ +++||+||| +|.| .+..++. ..|
T Consensus 675 ~~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el---~~L 747 (799)
T 2zkm_X 675 VVATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL---ASL 747 (799)
T ss_dssp TTCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGG---CEE
T ss_pred eeeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCc---cEE
Confidence 346799999999999984 4799999999953 357899 776 579999999 7999 7865542 589
Q ss_pred EEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEee
Q 046822 73 EVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVS 133 (971)
Q Consensus 73 ~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 133 (971)
+|.|||++ +++||++.||+..+.. + .+|++|.......-..+.|.|.+.+.
T Consensus 748 r~~V~D~d-----~d~iG~~~ipl~~L~~-G----~r~v~L~~~~g~~~~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 748 RVAVMEEG-----NKFLGHRIIPINALNS-G----YHHLCLHSESNMPLTMPALFIFLEMK 798 (799)
T ss_dssp EEEEEETT-----TEEEEEEEEEGGGBCC-E----EEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred EEEEEEeC-----CCccceEeeehhhcCC-C----cEEEeccCCCCCCCCceEEEEEEEEE
Confidence 99999975 7899999999999853 1 36799987654333458888877663
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.82 E-value=4.2e-08 Score=87.91 Aligned_cols=112 Identities=12% Similarity=0.155 Sum_probs=85.9
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe----EEEe-ecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ----ILRT-QVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~----~~~T-~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
...|+|.+.++.--.-+......||||.|.+... ..+| .++++|..|+|||+|.-.+.+. ..|.|.|++.
T Consensus 5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G-----r~l~i~Vfh~ 79 (126)
T 1yrk_A 5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG-----RVIQIVLMRA 79 (126)
T ss_dssp CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTT-----CEEEEEEEEE
T ss_pred CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCC-----EEEEEEEEcC
Confidence 5678999877653221122346899999999853 2355 8888999999999999998864 6899999974
Q ss_pred CCCCCCCceeEEEEEeCcccccc---CCcccceEEEeEeCCCCCeeeeEEEEEEEee
Q 046822 80 RRSSNSRNFLGKVRAPCSQLCKN---EGEATAQLYTLEKRSLFSHIRGEISLKLFVS 133 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~---~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 133 (971)
. .+|+..|.|++.+|... ++....-|+.|++ .|.|++.+.++
T Consensus 80 a-----~~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP-------~Gkl~~~i~~~ 124 (126)
T 1yrk_A 80 A-----EEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP-------QAKVLMSVQYF 124 (126)
T ss_dssp T-----TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-------SCEEEEEEEEE
T ss_pred C-----CCeeeEEEEEHHHHHhhhccCCCceEEEEeccc-------CcEEEEEEEEe
Confidence 3 38999999999999643 3445578999975 58888888765
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=6.2e-08 Score=87.97 Aligned_cols=113 Identities=10% Similarity=0.099 Sum_probs=87.9
Q ss_pred CCeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEcCe----EEEe-ecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKD-GEGSSSPFVEVEFEKQ----ILRT-QVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVF 77 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d-~~g~~dPyv~v~~~~~----~~~T-~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~ 77 (971)
....|+|.+.+..--+-.. .....||||.|.+... ..+| .++++|..|+|||+|.-.+.+. ..|.|.|+
T Consensus 8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~G-----r~l~i~Vf 82 (138)
T 2enj_A 8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKG-----RVMQIIVK 82 (138)
T ss_dssp CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSS-----CEEEEEEE
T ss_pred cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECC-----eEEEEEEE
Confidence 3667999998876433222 1336899999999853 3778 7888999999999999998864 68999999
Q ss_pred eCCCCCCCCceeEEEEEeCcccccc---CCcccceEEEeEeCCCCCeeeeEEEEEEEee
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKN---EGEATAQLYTLEKRSLFSHIRGEISLKLFVS 133 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~---~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 133 (971)
+.. .+|+..|.|++.+|... ++....-|+.|++ .|.|++.+.+.
T Consensus 83 h~a-----~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP-------~Gkl~v~i~~~ 129 (138)
T 2enj_A 83 GKN-----VDLISETTVELYSLAERCRKNNGKTEIWLELKP-------QGRMLMNARYF 129 (138)
T ss_dssp CSS-----CSCCEEEEEESHHHHHHHHHTTTCEEEEEECBS-------SCEEEEEEEEC
T ss_pred cCC-----CCeeeEEEEEHHHHHhhhccCCCceEEEEeccc-------CcEEEEEEEEE
Confidence 633 38999999999999744 3445578999975 58999998875
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.63 E-value=4.8e-07 Score=81.11 Aligned_cols=108 Identities=13% Similarity=0.282 Sum_probs=81.9
Q ss_pred eeEEEEEEEeeeC--CCCCCccCCCCcccCcEEEEEECCEE----Eee-ecccCCCCCeecceeEEEeeCCCcEEEEEEE
Q 046822 597 IGVLEMGILGATG--LMPMKFKEGKGGSVDAYCVAKYGQKW----VRT-RTVVDSLSPKWNEQYTWEVFDPCTVITVGVF 669 (971)
Q Consensus 597 ~g~L~v~v~~a~~--L~~~~~~~~~g~s~dpy~~~~~g~~~----~rT-~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~ 669 (971)
.+.|+|.+.++.- |++. .-.. ||||.+.+.... -+| .+.++|..|.||+.|.-.|++. ..|.|.||
T Consensus 5 ~~flRi~~~~~~~~~~~~~-----~~~l-DPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G-r~l~i~Vf 77 (126)
T 1yrk_A 5 APFLRIAFNSYELGSLQAE-----DEAN-QPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG-RVIQIVLM 77 (126)
T ss_dssp CCEEEEEEEEEECSSCCCS-----SSSC-CCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTT-CEEEEEEE
T ss_pred CccEEeeeccccccccCCc-----cccC-CceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCC-EEEEEEEE
Confidence 3567777766653 3221 1134 999999996443 255 7778999999999999998764 47999999
Q ss_pred eCCCCCccccCCCCCCCceeEEEEEEccccc-----CCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 670 DNCSLDKNIINNSGGRDSRIGKVRIRLSTLE-----SDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 670 D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
+.. .++++.|.|++.+|. .+...+.|+.|. +.|+|++.+++-
T Consensus 78 h~a-------------~~fvAn~tV~~edL~~~c~~~~g~~e~WvdLe--------P~Gkl~~~i~~~ 124 (126)
T 1yrk_A 78 RAA-------------EEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ--------PQAKVLMSVQYF 124 (126)
T ss_dssp EET-------------TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--------SSCEEEEEEEEE
T ss_pred cCC-------------CCeeeEEEEEHHHHHhhhccCCCceEEEEecc--------cCcEEEEEEEEe
Confidence 753 399999999999985 456778899885 469999999863
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.4e-07 Score=83.18 Aligned_cols=111 Identities=13% Similarity=0.151 Sum_probs=82.8
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE-E---Eee-ecccCCCCCeecceeEEEeeCCCcEEEEEEEeC
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-W---VRT-RTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDN 671 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-~---~rT-~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~ 671 (971)
.+.|+|.+.++.--+-+.. ..-.. ||||.+.+... . -+| .+.++|..|.||+.|.-.|++. ..|.|.||+.
T Consensus 9 ~~flRi~l~~~~~~~~~~~--~~~~l-DPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~G-r~l~i~Vfh~ 84 (138)
T 2enj_A 9 SPFLRIGLSNFDCGSCQSC--QGEAV-NPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKG-RVMQIIVKGK 84 (138)
T ss_dssp CCCEEEEEEEEECCCCCCS--CCCCC-CCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSS-CEEEEEEECS
T ss_pred CcceEEEeeccccCCCCCc--ccccC-CceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECC-eEEEEEEEcC
Confidence 4567888777764332110 01134 99999999643 2 566 6678899999999999988764 4899999965
Q ss_pred CCCCccccCCCCCCCceeEEEEEEccccc-----CCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 672 CSLDKNIINNSGGRDSRIGKVRIRLSTLE-----SDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 672 ~~~~~~~~~~~~~~d~~iG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
. .+|++.|.|++.+|. .+...+.|+.|. +.|+|++.+++.
T Consensus 85 a-------------~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLe--------P~Gkl~v~i~~~ 129 (138)
T 2enj_A 85 N-------------VDLISETTVELYSLAERCRKNNGKTEIWLELK--------PQGRMLMNARYF 129 (138)
T ss_dssp S-------------CSCCEEEEEESHHHHHHHHHTTTCEEEEEECB--------SSCEEEEEEEEC
T ss_pred C-------------CCeeeEEEEEHHHHHhhhccCCCceEEEEecc--------cCcEEEEEEEEE
Confidence 3 399999999999985 455678899885 469999999985
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.47 E-value=1.2 Score=44.40 Aligned_cols=79 Identities=14% Similarity=0.247 Sum_probs=53.7
Q ss_pred CCCCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc---------------C----eEEEeecccCCCCCeeeeeeEEec
Q 046822 1 MGDGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE---------------K----QILRTQVKYKDLNPIWNEKLVFDV 61 (971)
Q Consensus 1 ~~~~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~---------------~----~~~~T~~~~~t~nP~wne~f~f~v 61 (971)
||...+.|.|++.++. +.........|--|.+.+. + ...+|.+.+.+.+|.|+|++.+.+
T Consensus 22 Pgd~RNdLYVtl~~g~-F~~~~k~~aRNIeV~vevr~~~G~~i~~~I~~~sg~~~~se~~S~V~YHnk~P~w~EtIKi~L 100 (220)
T 3l4c_A 22 PGDVRNDIYVTLVQGD-FDKGSKTTAKNVEVTVSVYDEDGKRLEHVIFPGAGDEAISEYKSVIYYQVKQPRWFETVKVAI 100 (220)
T ss_dssp ----CEEEEEEEEEEE-CCCSSSSSCCCEEEEEEEEETTSCBCCSCEECTTCCSCBSCEECCCCTTCSSCCCCEEEEEEE
T ss_pred CCCCcccEEEEeeEeE-ECCCCCCCcceEEEEEEEEcCCCCCcccCEEcCCCCCCceeEEEEEEEcCCCCCceEeEEEee
Confidence 6778888999999984 5331112234555555542 1 257888889999999999999998
Q ss_pred CCCCCCCcceEEEEEEeCCC
Q 046822 62 PDIAELPYKHIEVNVFNERR 81 (971)
Q Consensus 62 ~~~~~l~~~~L~i~V~d~~~ 81 (971)
.. +......|.|.+++...
T Consensus 101 P~-~~~~~~HLlFtFrH~S~ 119 (220)
T 3l4c_A 101 PI-EDVNRSHLRFTFRHRSS 119 (220)
T ss_dssp CT-TSSTTEEEEEEEEECCC
T ss_pred Ch-hhcCCeEEEEEEEEecc
Confidence 74 45667899999998654
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=82.80 E-value=7.1 Score=36.61 Aligned_cols=122 Identities=13% Similarity=0.086 Sum_probs=79.5
Q ss_pred ccccceeEEEEEEEEeecCC----CCCCCCeEEEEEEC--C-eeeeeeeecCCCCccccEEEEeccCC-------CcceE
Q 046822 266 DLVEQMQYLYVRVVKARDIS----LFGGGEIVAEVKLG--N-YRGITKRVSSNHLQWDQVFAFSKDCI-------QSSAA 331 (971)
Q Consensus 266 d~v~~~~~L~V~v~~a~~L~----~~~~~dpyV~v~~~--~-~~~kT~~~~~~nP~wne~f~f~~~~~-------~~~~l 331 (971)
++.+....+.|+|.++.--+ ..+..+|..-+.+. . +...|.+....+|.+|-+-.|.+..- +...+
T Consensus 12 ~l~~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~G~~p~y~fts~Y~V~~d~~fl~yL~~~~l 91 (156)
T 2yrb_A 12 HLERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVRGLHPEYNFTSQYLVHVNDLFLQYIQKNTI 91 (156)
T ss_dssp SCCSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEESSSCCCCEEEEEEECCSHHHHHHHHHCCE
T ss_pred hccCCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeecccccCCCCCcceEEEEEEEeCHHHHHHHhcCCE
Confidence 34444588999999987433 22344666655555 4 45566666633999999988877521 34567
Q ss_pred EEEEecC--CCCcccEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCccccEEEEEEEEEe
Q 046822 332 EIFVKES--DKDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFG 391 (971)
Q Consensus 332 ~v~v~D~--~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 391 (971)
.|++... ..-+.||.+.|+|.++..+.. .+. .-.+|.+..|.-...|.|.+.+.+.
T Consensus 92 ~lELhqa~g~~~~tla~~~I~l~~lLe~~~---~i~-g~~~L~g~~g~~~~~G~LeywiRL~ 149 (156)
T 2yrb_A 92 TLEVHQAYSTEYETIAACQLKFHEILEKSG---RIF-CTASLIGTKGDIPNFGTVEYWFRLR 149 (156)
T ss_dssp EEEEEEECSSCEEEEEEEEECCSHHHHCCS---CEE-EEEEECBSSSCCTTSEEEEEEEEEE
T ss_pred EEEEEEeeCCCceEEEEEEEEhHHhhCcCC---ceE-EEEEEEcCCCCcceEEEEEEEEEEe
Confidence 7777776 555789999999999986532 111 2236777666323678888777543
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=81.71 E-value=5.7 Score=48.79 Aligned_cols=95 Identities=13% Similarity=0.205 Sum_probs=61.5
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE--CCEE----EeeecccCCCCCeecceeEEEee--C-C-CcEEEEE
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY--GQKW----VRTRTVVDSLSPKWNEQYTWEVF--D-P-CTVITVG 667 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~--g~~~----~rT~~~~~~~nP~Wne~~~~~v~--~-~-~~~l~i~ 667 (971)
..+.|+|.++.++... ..+ +-||.+.+ |++. ..|..+.-..+|.|||.++|++. + | .+.|.|+
T Consensus 217 ~~f~i~i~~~~~~~~~------~~~-~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~t 289 (940)
T 2wxf_A 217 QPFSIELIEGRKVNAD------ERM-KLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFA 289 (940)
T ss_dssp SEEEEEEEEEECCCC---------C-EEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEE
T ss_pred CceEEEEEEecccCCC------CCc-eEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEE
Confidence 5799999999999752 234 77887775 7654 45555555778999999888876 3 3 4499999
Q ss_pred EEeCCCC--Ccccc-CCCCCCCceeEEEEEEcccc
Q 046822 668 VFDNCSL--DKNII-NNSGGRDSRIGKVRIRLSTL 699 (971)
Q Consensus 668 V~D~~~~--~~~~~-~~~~~~d~~iG~~~i~l~~l 699 (971)
||+...- +..+. ......+..||.+.++|-+-
T Consensus 290 i~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~ 324 (940)
T 2wxf_A 290 LYAVVEKAKKARSTKKKSKKADCPIAWANLMLFDY 324 (940)
T ss_dssp EEEEC----------------CEEEEEEEEESBCT
T ss_pred EEEecCCccCccccccccccccceEEEEeeeEECC
Confidence 9996421 00000 00112356999999999773
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 971 | ||||
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 3e-18 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 6e-12 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 6e-11 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 4e-05 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 8e-15 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 4e-13 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-09 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 2e-07 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 1e-14 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 7e-09 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 1e-04 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 4e-14 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 1e-10 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 1e-06 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-05 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 6e-14 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 1e-06 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 2e-06 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 3e-06 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 1e-13 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 1e-11 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 5e-11 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 3e-04 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 1e-13 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 3e-09 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 3e-06 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 3e-05 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 4e-13 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 1e-07 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 4e-05 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 6e-13 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 8e-11 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 7e-09 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 9e-09 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 6e-12 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 3e-07 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 2e-06 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 4e-11 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 1e-08 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 5e-07 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 3e-06 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 3e-10 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 9e-09 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-04 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 9e-04 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 3e-10 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 6e-08 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 6e-07 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 4e-10 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 4e-09 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 2e-07 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 5e-07 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 7e-10 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 3e-09 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 3e-05 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 2e-08 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 5e-06 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 3e-04 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 0.004 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 2e-08 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 7e-05 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 8e-05 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 4e-04 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 8e-08 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 5e-07 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 5e-05 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 0.003 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 1e-06 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 3e-06 |
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.4 bits (195), Expect = 3e-18
Identities = 23/116 (19%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVF 59
+L+V ++ A +L ++ +P+V++ F +K RT+ K L P WN+ ++
Sbjct: 13 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 72
Query: 60 DVPDIAELPYKHIEVNVFNERRSSNSRN-FLGKVRAPCSQLCKNEGEATAQLYTLE 114
E + +E+ ++++ R + FLG++ ++ Y L+
Sbjct: 73 SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD---EPHWYKLQ 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.6 bits (149), Expect = 6e-12
Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 21/126 (16%)
Query: 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVA-----KYGQKWVRTRTVVDSLSPKW 649
L + ILGA L + G + Y + + RT+TV +L PKW
Sbjct: 11 KVGHQLIVTILGAKDLPSRE----DGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKW 66
Query: 650 NEQYTWEVFDPCT----VITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVY 705
N+ + + ++ + ++D + + +G++ I L T D
Sbjct: 67 NQTFIYSPVHRREFRERMLEITLWDQARVRE-------EESEFLGEILIELETALLDDE- 118
Query: 706 THSYPL 711
H Y L
Sbjct: 119 PHWYKL 124
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.6 bits (141), Expect = 6e-11
Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 20/129 (15%)
Query: 426 KLWY------LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSL 479
KLW+ L V+++ A+D+ + G + K +
Sbjct: 6 KLWFDKVGHQLIVTILGAKDLPSREDGR----PRNPYVKIYFLPDRSDKNKRRTKTVKKT 61
Query: 480 SNPCWNEDLLFVVAEPFEDY---LLISVEDH--VGPGKDEIVGKVLIPVSAVERRTDDKQ 534
P WN+ ++ E L I++ D V + E +G++LI +
Sbjct: 62 LEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA-----LLD 116
Query: 535 VVSRWFNLE 543
W+ L+
Sbjct: 117 DEPHWYKLQ 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (98), Expect = 4e-05
Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 25/125 (20%)
Query: 265 YDLVEQMQYLYVRVVKARDISLFGGGE-----IVAEVKLGNYRGITKRVS----SNHLQW 315
+D + L V ++ A+D+ G + +R + +W
Sbjct: 9 FD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKW 66
Query: 316 DQVFAF---SKDCIQSSAAEIFVKESD-----KDDFLGRIWFDLNEVPRRVPPDSQLAPQ 367
+Q F + + + EI + + + +FLG I +L P
Sbjct: 67 NQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA------LLDDEPH 120
Query: 368 WYRME 372
WY+++
Sbjct: 121 WYKLQ 125
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 70.2 bits (171), Expect = 8e-15
Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 17/136 (12%)
Query: 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVV-DSLSPKWNEQYTW 655
G LE+ ++ A GL F ++D Y + ++ +P+WNE + +
Sbjct: 9 HGTLEVVLVSAKGLEDADF----LNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIF 64
Query: 656 EVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLH 715
V + T + +FD + G D +G+ I L + + + ++
Sbjct: 65 TVSEGTTELKAKIFD---------KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD 115
Query: 716 PSGVKKMGELHLAVRF 731
+ GE+ +A+ F
Sbjct: 116 E---EYKGEIWVALSF 128
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 65.1 bits (158), Expect = 4e-13
Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 10/125 (8%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQV-KYKDLNPIWNEKLVFDVPDIA 65
L V +++A L D + P+V++ Q ++ V + P WNE +F V +
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-- 68
Query: 66 ELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGE 125
++ +F++ + +G+ P + EG Y + K +GE
Sbjct: 69 --GTTELKAKIFDKDVGTEDD-AVGEATIPLEPVFV-EGSIPPTAYNVVKD---EEYKGE 121
Query: 126 ISLKL 130
I + L
Sbjct: 122 IWVAL 126
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 55.1 bits (132), Expect = 1e-09
Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 12/129 (9%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLL 489
L V ++ A+ + D + M + + Q K+ +A T P WNE +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPY----VQLTCRTQDQKSNVAEGMGT----TPEWNETFI 63
Query: 490 FVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHFGNQ 549
F V+E L + D +D+ VG+ IP+ V + + +N+ +
Sbjct: 64 FTVSEG-TTELKAKIFDKDVGTEDDAVGEATIPLEPVF---VEGSIPPTAYNVVKDEEYK 119
Query: 550 GESKVVTRF 558
GE V F
Sbjct: 120 GEIWVALSF 128
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 49.0 bits (116), Expect = 2e-07
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 14/124 (11%)
Query: 274 LYVRVVKARDI---SLFGGGEIVAEVKLGNYRGITKRVSSNHLQ--WDQVFAFS-KDCIQ 327
L V +V A+ + + ++ + W++ F F+ +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 328 SSAAEIFVKES-DKDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMV 386
A+IF K+ +DD +G L V + + P Y + D GE+ V
Sbjct: 72 ELKAKIFDKDVGTEDDAVGEATIPLEP----VFVEGSIPPTAYNVVK---DEEYKGEIWV 124
Query: 387 SIWF 390
++ F
Sbjct: 125 ALSF 128
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.0 bits (168), Expect = 1e-14
Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
L V+V+ A +L+ D G S PF +E L+T YK+LNP WN+ F + D
Sbjct: 7 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKD--- 63
Query: 67 LPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEI 126
+ +EV VF+E +FLGKV P + + Y L+ + L +G I
Sbjct: 64 -IHDVLEVTVFDEDGDKPP-DFLGKVAIPLLSIRDGQ----PNCYVLKNKDLEQAFKGVI 117
Query: 127 SLKL 130
L++
Sbjct: 118 YLEM 121
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (126), Expect = 7e-09
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 268 VEQMQYLYVRVVKARDI---SLFGGGEIVAEVKLGNYRGITKRV-SSNHLQWDQVFAFSK 323
V+ + L V+V+KA D+ G + ++LGN R T V + + +W++VF F
Sbjct: 2 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFP- 60
Query: 324 DCIQSSAAEIFVKESDK---DDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRSK 380
E+ V + D DFLG++ L + P Y ++++ +++
Sbjct: 61 IKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDG-------QPNCYVLKNKDLEQAF 113
Query: 381 GGEVMVSI 388
G + + +
Sbjct: 114 KGVIYLEM 121
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (95), Expect = 1e-04
Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 23/140 (16%)
Query: 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDL 488
L+V V++A D++ D F ++GN L+T + NP WN+
Sbjct: 7 ILQVKVLKAADLLAADFSGKSDPF----CLLELGNDRLQTHTVYKN-----LNPEWNKVF 57
Query: 489 LFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHFGN 548
F + + D L ++V D G + +GKV IP+ ++ + L+N
Sbjct: 58 TFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQP------NCYVLKNKDLE 110
Query: 549 QGESKVVTRFGSRIHLRVSL 568
Q I+L + L
Sbjct: 111 QAFK-------GVIYLEMDL 123
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 68.2 bits (166), Expect = 4e-14
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 7/113 (6%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFDV 61
+L+V +I A L D G+S P+V+V +K+ T+V K LNP++NE+ F V
Sbjct: 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92
Query: 62 PDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114
P EL K + + V++ R S + +G+ + P + + + G T + L+
Sbjct: 93 PYS-ELGGKTLVMAVYDFDRFS-KHDIIGEFKVPMNTV--DFGHVTEEWRDLQ 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.2 bits (140), Expect = 1e-10
Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 19/124 (15%)
Query: 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYC---VAKYGQKWVRTRTVVDSLSPKWNE 651
L +GI+ A L + GG+ D Y + +K T+ +L+P +NE
Sbjct: 31 FQNNQLLVGIIQAAELPALD----MGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 86
Query: 652 QYTWEVFDPC---TVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHS 708
Q+T++V + + V+D + + IG+ ++ ++T++ V
Sbjct: 87 QFTFKVPYSELGGKTLVMAVYDF---------DRFSKHDIIGEFKVPMNTVDFGHVTEEW 137
Query: 709 YPLL 712
L
Sbjct: 138 RDLQ 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.7 bits (110), Expect = 1e-06
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 18/120 (15%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQV---GNQFLKTRIAAPSATRSLSNPCWNE 486
L V +I+A ++ D G + + K + + +T++ R NP +NE
Sbjct: 36 LLVGIIQAAELPALDMGG----TSDPYVKVFLLPDKKKKFETKVH-----RKTLNPVFNE 86
Query: 487 DLLFVVA--EPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLEN 544
F V E L+++V D K +I+G+ +P++ V D V W +L++
Sbjct: 87 QFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV----DFGHVTEEWRDLQS 142
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.6 bits (102), Expect = 2e-05
Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 17/115 (14%)
Query: 270 QMQYLYVRVVKARDI---SLFGGGEIVAEVKLGNYRGITKRVSSNHLQWDQV------FA 320
Q L V +++A ++ + G + +V L + + + V F
Sbjct: 32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK 91
Query: 321 FSKDCIQSSAAEIFVKESD---KDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRME 372
+ + V + D K D +G +N V + +W ++
Sbjct: 92 VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF-----GHVTEEWRDLQ 141
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 67.6 bits (164), Expect = 6e-14
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 17/127 (13%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE--------------KQILRTQVKYKDLN 50
L++ ++ A NL+P+D G S PFV+V + RT+ K LN
Sbjct: 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 51 PIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQL 110
P WN+ +++ + +L K +EV V++ R S S +FLG+V S + T +
Sbjct: 77 PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFS-SNDFLGEVLIDLSSTSH--LDNTPRW 133
Query: 111 YTLEKRS 117
Y L++++
Sbjct: 134 YPLKEQT 140
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.8 bits (110), Expect = 1e-06
Identities = 26/132 (19%), Positives = 53/132 (40%), Gaps = 29/132 (21%)
Query: 267 LVEQMQYLYVRVVKARD---------------ISLFGGGEIVAEVKL--GNYRGITKRVS 309
+ + L + +++AR+ + L G V V+ Y+ TK V
Sbjct: 13 INYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ 72
Query: 310 SN-HLQWDQVFAF---SKDCIQSSAAEIFVKESD---KDDFLGRIWFDLNEVPRRVPPDS 362
+ + +W+Q + S + + E+ V + D +DFLG + DL+
Sbjct: 73 KSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL----- 127
Query: 363 QLAPQWYRMEDR 374
P+WY ++++
Sbjct: 128 DNTPRWYPLKEQ 139
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.4 bits (109), Expect = 2e-06
Identities = 22/129 (17%), Positives = 53/129 (41%), Gaps = 22/129 (17%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELH----------AKAQVGNQFLKTRIAAPSATRSL 479
L + +++A+++VP D F +++ + +T+ +
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYV-----QKS 74
Query: 480 SNPCWNEDLLFVV---AEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVV 536
NP WN+ +++ + + L ++V D+ ++ +G+VLI +S+
Sbjct: 75 LNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL----DNT 130
Query: 537 SRWFNLENH 545
RW+ L+
Sbjct: 131 PRWYPLKEQ 139
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.7 bits (107), Expect = 3e-06
Identities = 26/130 (20%), Positives = 45/130 (34%), Gaps = 25/130 (19%)
Query: 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCV--------------AKYGQKWVRTRTVVD 643
G L + IL A L+P G D + + RT+ V
Sbjct: 18 GNLIIHILQARNLVPRD----NNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK 73
Query: 644 SLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNI-INNSGGRDSRIGKVRIRLSTLESD 702
SL+P+WN+ ++ + +L+ + + + +G+V I LS+
Sbjct: 74 SLNPEWNQTVIYKSISMEQL------MKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL 127
Query: 703 RVYTHSYPLL 712
YPL
Sbjct: 128 DNTPRWYPLK 137
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 67.0 bits (163), Expect = 1e-13
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVF 59
+E L+V V A NL+P D G S P+V+++ + +T+ LNP WNE F
Sbjct: 14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 73
Query: 60 DVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEK 115
+ + + + V +++ +S +F+G + S+L K + +L + E+
Sbjct: 74 QLKE--SDKDRRLSVEIWDWDLTS-RNDFMGSLSFGISELQKAGVDGWFKLLSQEE 126
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 60.5 bits (146), Expect = 1e-11
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 21/122 (17%)
Query: 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-----GQKWVRTRTVVDSLSPKWNEQ 652
VL + + A L+PM G D Y K + +T+T+ SL+P+WNE
Sbjct: 15 EVLIVVVRDAKNLVPMD----PNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNET 70
Query: 653 YTWEVFDP--CTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYP 710
+ +++ + ++V ++D + R+ +G + +S L+ V +
Sbjct: 71 FRFQLKESDKDRRLSVEIWD---------WDLTSRNDFMGSLSFGISELQKAGV-DGWFK 120
Query: 711 LL 712
LL
Sbjct: 121 LL 122
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.9 bits (142), Expect = 5e-11
Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 12/131 (9%)
Query: 418 KSKVYLSPKLW--YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSA 475
+ ++Y+ + L V V +A+++VP D + + K ++
Sbjct: 3 RGRIYIQAHIDREVLIVVVRDAKNLVPMDPNG----LSDPYVKLKLIPDPKSESKQKTKT 58
Query: 476 TRSLSNPCWNEDLLFVVAEPFEDYLL-ISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQ 534
+ NP WNE F + E +D L + + D +++ +G + +S +++ D
Sbjct: 59 IKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDG- 117
Query: 535 VVSRWFNLENH 545
WF L +
Sbjct: 118 ----WFKLLSQ 124
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.3 bits (91), Expect = 3e-04
Identities = 17/116 (14%), Positives = 45/116 (38%), Gaps = 19/116 (16%)
Query: 272 QYLYVRVVKARDISLFGGGEIV--------AEVKLGNYRGITKRVSSNHL-QWDQVFAFS 322
+ L V V A+++ + + TK + + +W++ F F
Sbjct: 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74
Query: 323 -KDCIQSSAAEIFVKESD---KDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDR 374
K+ + + + + D ++DF+G + F ++E+ + W+++ +
Sbjct: 75 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG------VDGWFKLLSQ 124
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 66.7 bits (162), Expect = 1e-13
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 17/124 (13%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQI-----LRTQVKYKDLNPIWNEKLVF 59
L V V+ A +L D G S P+V+V +T VK N ++NE VF
Sbjct: 14 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF 73
Query: 60 DVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCS----------QLCKNEGEATAQ 109
D+P L +E V + R S +G++ + ++C A+
Sbjct: 74 DIPC-ESLEEISVEFLVLDSERGS-RNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAK 131
Query: 110 LYTL 113
+ L
Sbjct: 132 WHML 135
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.9 bits (129), Expect = 3e-09
Identities = 17/123 (13%), Positives = 46/123 (37%), Gaps = 14/123 (11%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLL 489
L V V++A+ + D + + K + + + + N +NE +
Sbjct: 17 LTVVVLKARHLPKSDVSGLS----DPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFV 72
Query: 490 FVVAEPFEDY--LLISVEDHVGPGKDEIVGKVLIPVSAVERRTDD--------KQVVSRW 539
F + + + V D ++E++G++++ +A ++ +++W
Sbjct: 73 FDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKW 132
Query: 540 FNL 542
L
Sbjct: 133 HML 135
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.5 bits (107), Expect = 3e-06
Identities = 17/126 (13%), Positives = 35/126 (27%), Gaps = 23/126 (18%)
Query: 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKW-----VRTRTVVDSLSPKW 649
L + +L A L G D Y +T + + +
Sbjct: 12 STTNTLTVVVLKARHLPKSDV----SGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVF 67
Query: 650 NEQYTWEVFDP---CTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYT 706
NE + +++ + V D + G R+ IG++ + +
Sbjct: 68 NELFVFDIPCESLEEISVEFLVLD---------SERGSRNEVIGRLVLGAT--AEGSGGG 116
Query: 707 HSYPLL 712
H +
Sbjct: 117 HWKEIC 122
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.4 bits (99), Expect = 3e-05
Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 23/122 (18%)
Query: 274 LYVRVVKARDI---SLFGGGEIVAEVKLGNYRGITKRV------SSNHLQWDQVFAF--S 322
L V V+KAR + + G + +V L + + + + + ++++F F
Sbjct: 17 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 76
Query: 323 KDCIQSSAAEIFVKESD---KDDFLGRIWFDLNEVPRRVP--------PDSQLAPQWYRM 371
+ ++ + E V +S+ +++ +GR+ P Q+A +W+ +
Sbjct: 77 CESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIA-KWHML 135
Query: 372 ED 373
D
Sbjct: 136 CD 137
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 65.2 bits (158), Expect = 4e-13
Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 17/125 (13%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVF 59
+ L+V +I +L D G S PFV++ +K +TQ+K K LNP +NE+ +
Sbjct: 14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73
Query: 60 DVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCS----------QLCKNEGEATAQ 109
D+ ++L K ++++V++ S +++G + S + KN+ + +
Sbjct: 74 DIKH-SDLAKKSLDISVWDYDIGK-SNDYIGGCQLGISAKGERLKHWYECLKNKDKKIER 131
Query: 110 LYTLE 114
+ L+
Sbjct: 132 WHQLQ 136
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.4 bits (117), Expect = 1e-07
Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 14/131 (10%)
Query: 424 SPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPC 483
S + L V +I + D + + K + K + NP
Sbjct: 11 STQQGGLIVGIIRCVHLAAMD----ANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE 66
Query: 484 WNEDLLFVV--AEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDD--------K 533
+NE+ + + ++ + L ISV D+ ++ +G + +SA R
Sbjct: 67 FNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKD 126
Query: 534 QVVSRWFNLEN 544
+ + RW L+N
Sbjct: 127 KKIERWHQLQN 137
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.1 bits (98), Expect = 4e-05
Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 9/121 (7%)
Query: 593 WKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVR-TRTVVDSLSPKWNE 651
+ G L +GI+ L M V + G+K T+ +L+P++NE
Sbjct: 10 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNE 69
Query: 652 QYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPL 711
++ +++ + + D D + G + IG ++ +S H Y
Sbjct: 70 EFFYDI--KHSDLAKKSLDISVWDY----DIGKSNDYIGGCQLGISAKGERL--KHWYEC 121
Query: 712 L 712
L
Sbjct: 122 L 122
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 64.4 bits (156), Expect = 6e-13
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 6/115 (5%)
Query: 271 MQYLYVRVVKARDISLFGGGEIVAEVKLGNYRGITKRVSSNHLQWDQVFAFS-KDCIQSS 329
M L V V KA+ +K+ N + T V + W+Q F F
Sbjct: 1 MSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGL 60
Query: 330 AAEIFVKESDKDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEV 384
E++ K D +G +W L + + + +W ++ + E+
Sbjct: 61 TVEVWNKGLIWDTMVGTVWIPLRTIR---QSNEEGPGEWLTLDSQAIM--ADSEI 110
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.2 bits (140), Expect = 8e-11
Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 12/119 (10%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAEL 67
L V V A ++ + +V ++ + T + P W + +F++
Sbjct: 4 LCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINR---- 55
Query: 68 PYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEI 126
+ V V+N + +G V P + ++ E + TL+ +++ + EI
Sbjct: 56 LDLGLTVEVWN--KGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMA--DSEI 110
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.8 bits (126), Expect = 7e-09
Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 25/149 (16%)
Query: 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWE 656
+ +L +G+ A + Y K T V P W + + +E
Sbjct: 1 MSLLCVGVKKAKFDGAQ-------EKFNTYVTLKVQNVKSTTI-AVRGSQPSWEQDFMFE 52
Query: 657 VFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTL--ESDRVYTHSYPLLML 714
+ +TV V++ D+ +G V I L T+ ++ L
Sbjct: 53 INRLDLGLTVEVWN----------KGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLT---L 99
Query: 715 HPSGVKKMGELHLAVRFSCANLVNMLHMY 743
+ E+ + + +L +
Sbjct: 100 DSQAIMADSEICGTKDPTFHRI--LLDAH 126
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.4 bits (125), Expect = 9e-09
Identities = 29/140 (20%), Positives = 47/140 (33%), Gaps = 19/140 (13%)
Query: 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDL 488
L V V +A+ +K + +V N T S P W +D
Sbjct: 3 LLCVGVKKAKFDGAQEKFNTY-------VTLKVQNVKSTTIAVRGS------QPSWEQDF 49
Query: 489 LFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLE-NHFG 547
+F + + L + V + G D +VG V IP+ + R +++ W L+
Sbjct: 50 MFEI-NRLDLGLTVEVWNK-GLIWDTMVGTVWIPLRTI--RQSNEEGPGEWLTLDSQAIM 105
Query: 548 NQGESK-VVTRFGSRIHLRV 566
E RI L
Sbjct: 106 ADSEICGTKDPTFHRILLDA 125
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (150), Expect = 6e-12
Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 5/117 (4%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSS-PFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFD 60
++ VV + A L D + +S P++++ +K ++T+V K L+P ++E F
Sbjct: 21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFY 80
Query: 61 VPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117
++ + + + R S +G+V P S + +EG+ + S
Sbjct: 81 GIPYTQIQELALHFTILSFDRFSRDD-IIGEVLIPLSGIELSEGKMLMNREIISGPS 136
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (115), Expect = 3e-07
Identities = 25/130 (19%), Positives = 43/130 (33%), Gaps = 19/130 (14%)
Query: 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY---GQKWVRTRTVVDSLSPKWNE 651
+ I A GL M + + + D Y + V+TR + +L P ++E
Sbjct: 19 FERKAFVVNIKEARGLPAM---DEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDE 75
Query: 652 QYTWEVFDP----CTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTH 707
+T+ + + RD IG+V I LS +E
Sbjct: 76 TFTFYGIPYTQIQELALHFTILSFDRF---------SRDDIIGEVLIPLSGIELSEGKML 126
Query: 708 SYPLLMLHPS 717
++ PS
Sbjct: 127 MNREIISGPS 136
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (109), Expect = 2e-06
Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 13/134 (9%)
Query: 413 GLCSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAA 472
GL +L + + + V++ EA+ + D+ S +KTR+
Sbjct: 7 GLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVL- 65
Query: 473 PSATRSLSNPCWNEDLLFVVAEPFEDY---LLISVEDHVGPGKDEIVGKVLIPVSAVERR 529
R +P ++E F + L ++ +D+I+G+VLIP+S +E
Sbjct: 66 ----RKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIEL- 120
Query: 530 TDDKQVVSRWFNLE 543
+ ++ N E
Sbjct: 121 -SEGKM---LMNRE 130
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.4 bits (143), Expect = 4e-11
Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 9/130 (6%)
Query: 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPD 63
K +L + VI+A K SP+VEV + Q +T+ +P W + L V
Sbjct: 4 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT- 62
Query: 64 IAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCK-NEGEATAQLYTLEKRSLFSHI 122
P + V++ + + LG + K N + + TL+
Sbjct: 63 ----PVSKLHFRVWSHQTLKSDV-LLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPT 117
Query: 123 --RGEISLKL 130
G++S+ L
Sbjct: 118 ETIGDLSICL 127
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (125), Expect = 1e-08
Identities = 17/136 (12%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEV 657
L++ ++ A K Y + +T ++ SPKW + T V
Sbjct: 6 SQLQITVISAKLKENKK----NWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIV 61
Query: 658 FDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTL---ESDRVYTHSYPLLML 714
+ V+ + + D +G + + + ++ L +
Sbjct: 62 TPVSK-LHFRVWSH---------QTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLG 111
Query: 715 HP-SGVKKMGELHLAV 729
+ +G+L + +
Sbjct: 112 GDKEPTETIGDLSICL 127
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (112), Expect = 5e-07
Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 19/141 (13%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLL 489
L+++VI A+ P + + V Q KT + ++P W + L
Sbjct: 8 LQITVISAKLKENKKNWFG----PSPYVEVTVDGQSKKTEKC-----NNTNSPKWKQPLT 58
Query: 490 FVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHFGNQ 549
+V L V H D ++G + + + ++ ++ L+ +
Sbjct: 59 VIV--TPVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKS-NNMKLEEVVVTLQLGGDKE 115
Query: 550 GESKVVTRFGSRIHLRVSLDG 570
L + LDG
Sbjct: 116 PTET-------IGDLSICLDG 129
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.5 bits (107), Expect = 3e-06
Identities = 16/120 (13%), Positives = 41/120 (34%), Gaps = 5/120 (4%)
Query: 274 LYVRVVKARDI---SLFGGGEIVAEVKLGNYRGITKRVSS-NHLQWDQVFAFSKDCIQSS 329
L + V+ A+ + G EV + T++ ++ N +W Q +
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVSKL 67
Query: 330 AAEIFVKES-DKDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSI 388
++ ++ D LG D+ E + + ++ + G++ + +
Sbjct: 68 HFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICL 127
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 57.5 bits (138), Expect = 3e-10
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 17/128 (13%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVF 59
KL V ++ A NL D G S P+V++ + +T +K LNP +NE F
Sbjct: 24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 83
Query: 60 DVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCS----------QLCKNEGEATAQ 109
+VP ++ + V V + + + +GKV + + N AQ
Sbjct: 84 EVPF-EQIQKVQVVVTVLDYDKIG-KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQ 141
Query: 110 LYTLEKRS 117
+TL+
Sbjct: 142 WHTLQVEE 149
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.3 bits (127), Expect = 9e-09
Identities = 23/131 (17%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 425 PKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCW 484
P L V ++EA+++ D G + + K + + + + ++ NP +
Sbjct: 22 PTAGKLTVVILEAKNLKKMDVGG----LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYY 77
Query: 485 NEDLLFVV--AEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDD--------KQ 534
NE F V + + ++++V D+ GK++ +GKV + ++ ++
Sbjct: 78 NESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRR 137
Query: 535 VVSRWFNLENH 545
+++W L+
Sbjct: 138 PIAQWHTLQVE 148
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.6 bits (94), Expect = 2e-04
Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 17/123 (13%)
Query: 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-----KWVRTRTVVDSLSPKW 649
P G L + IL A L M GG D Y Q K +T ++L+P +
Sbjct: 22 PTAGKLTVVILEAKNLKKMDV----GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYY 77
Query: 650 NEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSY 709
NE +++EV V DK G++ IGKV + + + H
Sbjct: 78 NESFSFEVPFEQIQKVQVVVTVLDYDK------IGKNDAIGKVFVGYN--STGAELRHWS 129
Query: 710 PLL 712
+L
Sbjct: 130 DML 132
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.6 bits (89), Expect = 9e-04
Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 44/170 (25%)
Query: 228 GGGGGGVYVNGSGEFSLKETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDISLF 287
GGGGG + G FSL+ Y L V +++A+++
Sbjct: 2 GGGGGILEKLGDICFSLR-------------------YV--PTAGKLTVVILEAKNLKKM 40
Query: 288 GGGE-----IVAEVKLGNYRGITKRVS----SNHLQWDQVFAFSKDCIQSSAAEIFVKES 338
G + + R K+ + + + +++ F+F Q ++ V
Sbjct: 41 DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVL 100
Query: 339 D-----KDDFLGRIWFDLNEVPRRV--------PPDSQLAPQWYRMEDRR 375
D K+D +G+++ N + P +A QW+ ++
Sbjct: 101 DYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTLQVEE 149
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 57.2 bits (137), Expect = 3e-10
Identities = 25/145 (17%), Positives = 52/145 (35%), Gaps = 28/145 (19%)
Query: 598 GVLEMGILGATGLMPMKF-------KEGKGGSVDAYCVAKYG-QKWVRTRTVVDSLSPKW 649
G+L++ I A L P + + +D Y + +T T + SP W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 650 NEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTL--ESDRVYTH 707
++++ +V + I + VF + + G D + I+ L R +
Sbjct: 66 HDEFVTDVCNGRK-IELAVFHDAPI---------GYDDFVANCTIQFEELLQNGSRHFED 115
Query: 708 SYPLLMLHPSGVKKMGELHLAVRFS 732
L + G++++ + S
Sbjct: 116 WIDL--------EPEGKVYVIIDLS 132
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 50.3 bits (119), Expect = 6e-08
Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 25/142 (17%)
Query: 7 KLVVEVIAAHNLMPKD-----------GEGSSSPFVEVEFEK-QILRTQVKYKDLNPIWN 54
L +++ A +L P P++ + + +I +T K K +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 55 EKLVFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114
++ V DV + IE+ VF++ +F+ +L +N LE
Sbjct: 67 DEFVTDVC-----NGRKIELAVFHDAPIGY-DDFVANCTIQFEELLQNGSRHFEDWIDLE 120
Query: 115 KRSLFSHIRGEISLKLFVSTTE 136
G++ + + +S +
Sbjct: 121 P-------EGKVYVIIDLSGSS 135
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 47.6 bits (112), Expect = 6e-07
Identities = 19/149 (12%), Positives = 48/149 (32%), Gaps = 29/149 (19%)
Query: 429 YLRVSVIEAQDIVPGDKGSAMMRFPEL-------HAKAQVGNQFLKTRIAAPSATRSLSN 481
L++ + EA + P P + V + + + + ++
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQT----ATKQKTNS 62
Query: 482 PCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFN 541
P W+++ + V + L + + +G D+ V I + + + W +
Sbjct: 63 PAWHDEFVTDVCNGRKIELAVFHDAPIGY--DDFVANCTIQFEELLQN--GSRHFEDWID 118
Query: 542 LENHFGNQGESKVVTRFGSRIHLRVSLDG 570
LE ++++ + L G
Sbjct: 119 LEPE--------------GKVYVIIDLSG 133
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.3 bits (135), Expect = 4e-10
Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 16/134 (11%)
Query: 6 EKLVVEVIAAHNLMP---KDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVF 59
K V V+ A + D + P+VE+ RT+ D+NP+WNE F
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 60 DVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLF 119
+ E +E+ + + + LG S + GE + +
Sbjct: 63 ILDPNQE---NVLEITLMDANYVMD--ETLGTATFTVSSM--KVGEKKEVPFIFNQV--- 112
Query: 120 SHIRGEISLKLFVS 133
+ + E+SL++ S
Sbjct: 113 TEMVLEMSLEVASS 126
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.2 bits (127), Expect = 4e-09
Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 21/136 (15%)
Query: 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---QKWVRTRTVVDSLSPKWNEQYTWE 656
+ +L AT + F + D Y RTR + ++P WNE + +
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTP-DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 63
Query: 657 VFDPCT-VITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLH 715
+ V+ + + D + D +G +S+++ +
Sbjct: 64 LDPNQENVLEITLMDA----------NYVMDETLGTATFTVSSMKVGEKKEVPFIF---- 109
Query: 716 PSGVKKMGELHLAVRF 731
L +++
Sbjct: 110 --NQVTEMVLEMSLEV 123
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (116), Expect = 2e-07
Identities = 19/127 (14%), Positives = 45/127 (35%), Gaps = 22/127 (17%)
Query: 274 LYVRVVKARDISLFGGGEIV------AEVKLGNYRGITKRVS----SNHLQWDQVFAFSK 323
V V++A ++ G+++ E+ + KR + W++ F F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 324 DCIQSSAAEIFVKESD--KDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKG 381
D Q + EI + +++ D+ LG F ++ + + +
Sbjct: 65 DPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE-----VPFIFNQV-----TE 114
Query: 382 GEVMVSI 388
+ +S+
Sbjct: 115 MVLEMSL 121
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (112), Expect = 5e-07
Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 8/115 (6%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLL 489
V V+ A + G G M+ P+ + + + + + NP WNE
Sbjct: 5 FTVVVLRATKVTKGAFGD-MLDTPDPYVELFISTTPDSRKR--TRHFNNDINPVWNETFE 61
Query: 490 FVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLEN 544
F++ E+ L I++ D DE +G VS+++ + F
Sbjct: 62 FILDPNQENVLEITLMDA-NYVMDETLGTATFTVSSMKVG----EKKEVPFIFNQ 111
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.5 bits (133), Expect = 7e-10
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 8/123 (6%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLL 489
LRV +I Q + +K + P++ + G T + NP W+ +
Sbjct: 6 LRVRIISGQQLPKVNKNKNSIVDPKVIVE-IHGVGRDTGSRQTAVITNNGFNPRWDMEFE 64
Query: 490 FVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHFGNQ 549
F V P + VED+ K++ +G+ IP + + R +L + G+Q
Sbjct: 65 FEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPW-------NSLKQGYRHVHLLSKNGDQ 117
Query: 550 GES 552
S
Sbjct: 118 HPS 120
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 54.0 bits (129), Expect = 3e-09
Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 19/129 (14%)
Query: 7 KLVVEVIAAHNL--MPKDGEGSSSPFVEVEF------EKQILRTQVKYKDLNPIWNEKLV 58
+L V +I+ L + K+ P V VE + NP W+ +
Sbjct: 5 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 64
Query: 59 FDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYT-----L 113
F+V P + + + SS+ +F+G+ P + +G L +
Sbjct: 65 FEVTV----PDLALVRFMVEDYDSSSKNDFIGQSTIPWN--SLKQGYRHVHLLSKNGDQH 118
Query: 114 EKRSLFSHI 122
+LF I
Sbjct: 119 PSATLFVKI 127
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.4 bits (99), Expect = 3e-05
Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 23/127 (18%)
Query: 593 WKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-----GQKWVRTRTVVDS-LS 646
W+P L + I+ L + K VD + + +T + ++ +
Sbjct: 1 WRP--ERLRVRIISGQQLPKVNK--NKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFN 56
Query: 647 PKWNEQYTWEVFDPCT-VITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVY 705
P+W+ ++ +EV P ++ V D +S ++ IG+ I S +
Sbjct: 57 PRWDMEFEFEVTVPDLALVRFMVED---------YDSSSKNDFIGQSTIP---WNSLKQG 104
Query: 706 THSYPLL 712
LL
Sbjct: 105 YRHVHLL 111
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.1 bits (124), Expect = 2e-08
Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 18/125 (14%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVF 59
L V +I A NL D G S P+V+ + +T +K LNP +NE LVF
Sbjct: 19 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 78
Query: 60 DVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCS-----------QLCKNEGEATA 108
DV + + + V + ++ +G R ++ N +
Sbjct: 79 DVAP-ESVENVGLSIAVVDYDCIGHNE-VIGVCRVGPEAADPHGREHWAEMLANPRKPVE 136
Query: 109 QLYTL 113
+ L
Sbjct: 137 HWHQL 141
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.8 bits (105), Expect = 5e-06
Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 15/131 (11%)
Query: 425 PKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCW 484
P L V++I+A ++ D + + KA + ++ + + S ++ NP +
Sbjct: 17 PTAGLLTVTIIKASNLKAMDLTGFS----DPYVKASLISEGRRLKKRKTSIKKNTLNPTY 72
Query: 485 NEDLLFVVA--EPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDD---------K 533
NE L+F VA L I+V D+ G +E++G + A + + +
Sbjct: 73 NEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPR 132
Query: 534 QVVSRWFNLEN 544
+ V W L
Sbjct: 133 KPVEHWHQLVE 143
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.8 bits (92), Expect = 3e-04
Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 16/123 (13%)
Query: 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-----QKWVRTRTVVDSLSPKW 649
P G+L + I+ A+ L M G D Y A K +T ++L+P +
Sbjct: 17 PTAGLLTVTIIKASNLKAM----DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTY 72
Query: 650 NEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSY 709
NE ++V D G + IG R+ + H
Sbjct: 73 NEALVFDVAPESVENVGLSIAVVDYDC------IGHNEVIGVCRVGPEAADP-HGREHWA 125
Query: 710 PLL 712
+L
Sbjct: 126 EML 128
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.7 bits (84), Expect = 0.004
Identities = 14/121 (11%), Positives = 33/121 (27%), Gaps = 20/121 (16%)
Query: 270 QMQYLYVRVVKARDI---SLFGGGEIVAEVKLGNYRGITKRV------SSNHLQWDQVFA 320
L V ++KA ++ L G + + L + K+ ++ + +++
Sbjct: 18 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALV 77
Query: 321 FSKDCIQSSAAEIFVKESD-----KDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRR 375
F + + D ++ +G D W M
Sbjct: 78 FDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAA------DPHGREHWAEMLANP 131
Query: 376 G 376
Sbjct: 132 R 132
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.9 bits (123), Expect = 2e-08
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFD 60
G ++LVV ++ A +L KD G S P+V++ K+ +T+V K LNPI+NE F
Sbjct: 16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFS 75
Query: 61 VPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEK 115
VP AEL + + +V++ R S + +G+V + + +
Sbjct: 76 VPL-AELAQRKLHFSVYDFDRFS-RHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.5 bits (96), Expect = 7e-05
Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 15/123 (12%)
Query: 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYT 654
L + IL A L P K G + +K +T+ +L+P +NE +
Sbjct: 15 YGSDQLVVRILQALDL-PAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQ 73
Query: 655 WEVFDPC---TVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVY--THSY 709
+ V + V+D + R IG+V + +++
Sbjct: 74 FSVPLAELAQRKLHFSVYD---------FDRFSRHDLIGQVVLDNLLELAEQPPDRPLWR 124
Query: 710 PLL 712
+L
Sbjct: 125 DIL 127
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.1 bits (95), Expect = 8e-05
Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 17/133 (12%)
Query: 253 GGPLNKDKTSSTYDLVEQMQYLYVRVVKARDI---SLFGGGEIVAEVKLGNYRGITKRVS 309
G P + + Y L VR+++A D+ G + ++ L R +
Sbjct: 1 GAPCGRISFALRYL--YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTK 58
Query: 310 SNHLQWDQV------FAFSKDCIQSSAAEIFVKESD---KDDFLGRIWFDLNEVPRRVPP 360
+ + + F+ + V + D + D +G++ D PP
Sbjct: 59 VHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPP 118
Query: 361 DSQLAPQWYRMED 373
D P W + +
Sbjct: 119 DR---PLWRDILE 128
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.2 bits (90), Expect = 4e-04
Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 12/131 (9%)
Query: 416 SLKSKVYLSPKLWYLRVSVIEAQDI-VPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPS 474
+ + L V +++A D+ G + + +T++ +
Sbjct: 6 RISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLP--DRKKKFQTKVHRKT 63
Query: 475 ATRSLSNPCWNEDLLFVV--AEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDD 532
NP +NE F V AE + L SV D + +++G+V++
Sbjct: 64 -----LNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPP 118
Query: 533 KQVVSRWFNLE 543
+ + W ++
Sbjct: 119 DRPL--WRDIL 127
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (118), Expect = 8e-08
Identities = 26/129 (20%), Positives = 41/129 (31%), Gaps = 25/129 (19%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEF--------EKQILRTQVKYKDLNPIWNEKLVF 59
L + VI+ L + +VEVE + + +NP+W E+
Sbjct: 3 LSITVISGQFLSERS----VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58
Query: 60 DVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYT-----LE 114
I + V V E FLG P + L G L++ L
Sbjct: 59 FEK-ILMPELASLRVAVMEEG-----NKFLGHRIIPINALNS--GYHHLCLHSESNMPLT 110
Query: 115 KRSLFSHIR 123
+LF +
Sbjct: 111 MPALFIFLE 119
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (113), Expect = 5e-07
Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 11/116 (9%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF----EKQILRTQVKYKDLNPIWNEKLVFD 60
K +L V + A + +G +V+ +T +K + L+ W E LV
Sbjct: 25 KAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP 81
Query: 61 VPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116
+ + ELP + + + R S + G++R + AQ L+
Sbjct: 82 LAE-EELPTATLTLTLRTCDRFSR-HSVAGELRLGLDGT--SVPLGAAQWGELKTS 133
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.8 bits (97), Expect = 5e-05
Identities = 17/121 (14%), Positives = 26/121 (21%), Gaps = 17/121 (14%)
Query: 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY----GQKWVRTRTVVDSLSPKWN 650
L + L A G D Y G +T L W
Sbjct: 23 CQKAELFVTRLEAVTSNH-------DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWE 75
Query: 651 EQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYP 710
E + + + + R S G++R+ L
Sbjct: 76 EGLVLPLAEEELPTATLTLTLRT------CDRFSRHSVAGELRLGLDGTSVPLGAAQWGE 129
Query: 711 L 711
L
Sbjct: 130 L 130
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (84), Expect = 0.003
Identities = 17/123 (13%), Positives = 37/123 (30%), Gaps = 17/123 (13%)
Query: 262 SSTYDLVEQMQYLYVRVVKARDISLFGGGEIVAEVKLGNYRGITKRVSS-----NHLQWD 316
YD Q L+V ++A + GG + + + N G + ++ H W+
Sbjct: 18 CLDYD--CQKAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWE 75
Query: 317 QVFAFSKDCIQSSAAEIFVKESDK-----DDFLGRIWFDLNEVPRRVPPDSQLAPQWYRM 371
+ + A + + G + L+ + QW +
Sbjct: 76 EGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA-----QWGEL 130
Query: 372 EDR 374
+
Sbjct: 131 KTS 133
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.9 bits (108), Expect = 1e-06
Identities = 9/118 (7%), Positives = 32/118 (27%), Gaps = 22/118 (18%)
Query: 619 KGGSVDAYCVAKY-----GQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCS 673
+ + +C K + ++ P+W + + VI + +
Sbjct: 20 EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI-YEGRVIQIVLMRA-- 76
Query: 674 LDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731
+ +G + +++ L + ++ + V++
Sbjct: 77 ------AEDPMSEVTVGVSVLAERCKKNNGKAEFWLDL--------QPQAKVLMCVQY 120
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.1 bits (106), Expect = 3e-06
Identities = 14/124 (11%), Positives = 36/124 (29%), Gaps = 20/124 (16%)
Query: 13 IAAHNLMP-KDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
++ L + + +S PF V+ + K + P W + +
Sbjct: 9 FNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRV 68
Query: 67 LPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEI 126
+ I + E S + + ++ CK L+ + ++
Sbjct: 69 I---QIVLMRAAEDPMSEVTVGVSVL----AERCKKNNGKAEFWLDLQP-------QAKV 114
Query: 127 SLKL 130
+ +
Sbjct: 115 LMCV 118
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 971 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.86 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.83 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.8 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.79 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.76 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.76 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.75 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.74 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.72 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.72 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.71 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.71 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.7 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.7 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.7 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.7 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.7 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.68 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.67 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.66 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.66 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.62 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.62 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.61 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.61 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.61 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.61 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.6 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.6 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.58 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.56 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.55 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.55 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.52 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.51 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.48 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.45 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.44 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.33 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.31 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 89.23 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 88.7 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.1e-21 Score=182.91 Aligned_cols=123 Identities=27% Similarity=0.465 Sum_probs=109.3
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCC
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSL 674 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~ 674 (971)
+++|.|+|+|++|+||+.++ ..|++ ||||++++|++.++|+++.++.||.|||.|.|.+.++...|.|+|||++.+
T Consensus 3 ~~~G~L~V~v~~A~~L~~~d---~~g~~-Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~ 78 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAAD---FSGKS-DPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGD 78 (126)
T ss_dssp CCSEEEEEEEEEEESCCCSS---SSSCC-CEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETT
T ss_pred CccEEEEEEEEEeECCCCCC---CCCCc-CeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCC
Confidence 57899999999999999864 47888 999999999999999999999999999999999999889999999999877
Q ss_pred CccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEee
Q 046822 675 DKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSC 733 (971)
Q Consensus 675 ~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 733 (971)
+ +|++||++.|+|+++..+. .+||.|......+. ..|+|+|+++|.+
T Consensus 79 ~---------~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~-~~G~i~l~~~~i~ 125 (126)
T d2ep6a1 79 K---------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQA-FKGVIYLEMDLIY 125 (126)
T ss_dssp E---------EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSC-CSSEEEEEEEEEE
T ss_pred c---------CcceEEEEEEEHHHCCCCC--ceEEEccccCCCCc-eeEEEEEEEEEEE
Confidence 5 7899999999999998776 58999986665543 3599999998763
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=4.6e-21 Score=178.67 Aligned_cols=122 Identities=33% Similarity=0.541 Sum_probs=109.1
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSS 83 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~ 83 (971)
.-|.|+|+|++|+||+.++..|.+||||++.+++++++|+++++|.||.|||+|.|.+.++. ..|.|+|||++.++
T Consensus 4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~----~~L~i~V~d~~~~~ 79 (126)
T d2ep6a1 4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIH----DVLEVTVFDEDGDK 79 (126)
T ss_dssp CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTT----CEEEEEEEEEETTE
T ss_pred ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccC----ceeEEEEEEccCCc
Confidence 45899999999999999999999999999999999999999999999999999999998765 68999999999876
Q ss_pred CCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 84 NSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 84 ~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
+|++||++.|++.++... ..+||.|......++.+|+|++++.+..
T Consensus 80 -~d~~lG~~~i~l~~l~~~----~~~~~~l~~~~~~~~~~G~i~l~~~~i~ 125 (126)
T d2ep6a1 80 -PPDFLGKVAIPLLSIRDG----QPNCYVLKNKDLEQAFKGVIYLEMDLIY 125 (126)
T ss_dssp -EEEECCBCEEEGGGCCSS----CCEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred -CcceEEEEEEEHHHCCCC----CceEEEccccCCCCceeEEEEEEEEEEE
Confidence 789999999999998532 1379999887777778899999998764
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.80 E-value=2.1e-19 Score=169.79 Aligned_cols=126 Identities=19% Similarity=0.343 Sum_probs=108.4
Q ss_pred CCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeeccc-CCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCC
Q 046822 3 DGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKY-KDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERR 81 (971)
Q Consensus 3 ~~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~ 81 (971)
...|.|+|+|++|++|+.+|..|.+||||+++++++.++|++++ +++||.|||+|.|.+.+.. ..|.|+|||++.
T Consensus 7 ~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~----~~L~v~V~d~d~ 82 (136)
T d1wfja_ 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGT----TELKAKIFDKDV 82 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSC----CEEEEEECCSSS
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCcc----ceEEEEEEEecC
Confidence 34689999999999999999999999999999999999999887 6899999999999998655 679999999999
Q ss_pred CCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeeccc
Q 046822 82 SSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTTEE 137 (971)
Q Consensus 82 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~ 137 (971)
++ +|++||++.|+|.++...+ .....|+.|... .+.+|+|++++.|.+..+
T Consensus 83 ~~-~d~~iG~~~i~L~~l~~~~-~~~~~~~~l~~~---~~~~G~i~l~l~~~p~~p 133 (136)
T d1wfja_ 83 GT-EDDAVGEATIPLEPVFVEG-SIPPTAYNVVKD---EEYKGEIWVALSFKPSGP 133 (136)
T ss_dssp CT-TTCCSEEEEEESHHHHHHS-EEEEEEEEEEET---TEEEEEEEEEEEEEECCS
T ss_pred CC-CCCEEEEEEEEhHHhcccC-CcCcEEEEecCC---CccCEEEEEEEEEEeCCC
Confidence 87 7999999999999986543 333579999764 357899999999976543
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.79 E-value=3.4e-19 Score=168.24 Aligned_cols=122 Identities=20% Similarity=0.306 Sum_probs=105.2
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeeccc-CCCCCeecceeEEEeeCCCcEEEEEEEeCCC
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVV-DSLSPKWNEQYTWEVFDPCTVITVGVFDNCS 673 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~-~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~ 673 (971)
.+.|.|+|+|++|++|+..+ ..|++ ||||++++++..++|++++ +++||.|||.|.|.+.++...|+|+|||+|.
T Consensus 7 ~p~G~L~V~v~~a~~L~~~d---~~g~~-Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~ 82 (136)
T d1wfja_ 7 GPHGTLEVVLVSAKGLEDAD---FLNNM-DPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDV 82 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCC---SSCSS-CCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSS
T ss_pred CCcEEEEEEEEEeeCCCCCC---CCCCC-CccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecC
Confidence 57899999999999998764 47889 9999999999999999987 5899999999999999988899999999997
Q ss_pred CCccccCCCCCCCceeEEEEEEcccccC-CceEeeeEeceecCCCCcccceEEEEEEEEee
Q 046822 674 LDKNIINNSGGRDSRIGKVRIRLSTLES-DRVYTHSYPLLMLHPSGVKKMGELHLAVRFSC 733 (971)
Q Consensus 674 ~~~~~~~~~~~~d~~iG~~~i~l~~l~~-~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 733 (971)
++ +|++||++.|+|.++.. +.....||+|... .+..|+|+|+++|..
T Consensus 83 ~~---------~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~----~~~~G~i~l~l~~~p 130 (136)
T d1wfja_ 83 GT---------EDDAVGEATIPLEPVFVEGSIPPTAYNVVKD----EEYKGEIWVALSFKP 130 (136)
T ss_dssp CT---------TTCCSEEEEEESHHHHHHSEEEEEEEEEEET----TEEEEEEEEEEEEEE
T ss_pred CC---------CCCEEEEEEEEhHHhcccCCcCcEEEEecCC----CccCEEEEEEEEEEe
Confidence 75 89999999999999743 4445678988632 234699999999974
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.6e-18 Score=161.43 Aligned_cols=119 Identities=16% Similarity=0.236 Sum_probs=101.4
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC---EEEeeecccCCCCCeecceeEEEeeCCCc-EEEEEEEeCC
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ---KWVRTRTVVDSLSPKWNEQYTWEVFDPCT-VITVGVFDNC 672 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~---~~~rT~~~~~~~nP~Wne~~~~~v~~~~~-~l~i~V~D~~ 672 (971)
.+.|+|+|++|+||+.....|..|++ ||||++.+++ +..||+++.++.||.|||.|.|.+.++.. .|.|+|||++
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~-Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d 80 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTP-DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN 80 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCC-CEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECC
T ss_pred CcEEEEEEEEccCCCCccccccCCCC-CcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECC
Confidence 47899999999999975544556788 9999999964 67899999999999999999999987654 8999999998
Q ss_pred CCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 673 SLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 673 ~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
.. +|++||++.|+|++|..+.....||+|.. ...|+|++.+++.
T Consensus 81 ~~----------~d~~lG~~~i~L~~l~~~~~~~~~~~L~~------~~~g~i~~~l~~~ 124 (126)
T d1rlwa_ 81 YV----------MDETLGTATFTVSSMKVGEKKEVPFIFNQ------VTEMVLEMSLEVA 124 (126)
T ss_dssp SS----------CCEEEEEEEEEGGGSCTTCEEEEEEEETT------TEEEEEEEEEECC
T ss_pred CC----------CCCeEEEEEEEHHHccCCCeEEEEEEccC------CCeEEEEEEEEEE
Confidence 53 68999999999999998888899999952 2248888888764
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.76 E-value=2.6e-18 Score=161.67 Aligned_cols=122 Identities=20% Similarity=0.305 Sum_probs=104.4
Q ss_pred CCCCCeEEEEEEEEeeCCCCCC-----------CCCCCCcEEEEEEcCeE-EEeecccCCCCCeeeeeeEEecCCCCCCC
Q 046822 1 MGDGKEKLVVEVIAAHNLMPKD-----------GEGSSSPFVEVEFEKQI-LRTQVKYKDLNPIWNEKLVFDVPDIAELP 68 (971)
Q Consensus 1 ~~~~~~~L~V~V~~a~~L~~~d-----------~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~wne~f~f~v~~~~~l~ 68 (971)
|-+-+|.|+|+|++|++|++.+ ..+.+||||++.++++. .+|++++++.||.|||.|.|.+.+.
T Consensus 1 ~~~~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~---- 76 (136)
T d1gmia_ 1 MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---- 76 (136)
T ss_dssp CCCEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE----
T ss_pred CccEEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecC----
Confidence 4567899999999999999754 46688999999999875 6899999999999999999998643
Q ss_pred cceEEEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeec
Q 046822 69 YKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTT 135 (971)
Q Consensus 69 ~~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~ 135 (971)
..|.|+|||++.++ +|++||++.|+|+++...+......|++|++ +|+|++.+.+.+.
T Consensus 77 -~~l~i~V~d~~~~~-~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p-------~G~v~l~v~~~~~ 134 (136)
T d1gmia_ 77 -RKIELAVFHDAPIG-YDDFVANCTIQFEELLQNGSRHFEDWIDLEP-------EGKVYVIIDLSGS 134 (136)
T ss_dssp -CEEEEEEEECCSSS-SCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-------SCEEEEEEEEEEE
T ss_pred -CceEEEEEEecCCC-CceeEEEEEEEHHHhhhcCCcceeEEEeCCC-------CcEEEEEEEEEeC
Confidence 68999999999986 7999999999999997766555668999964 4889998888654
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1e-17 Score=156.73 Aligned_cols=123 Identities=21% Similarity=0.215 Sum_probs=100.8
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCC
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSN 84 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~ 84 (971)
.+.|.|+|++|++|+.++..+.+||||++.++++.++|+++++|.||.|||.|.|.+.. . ..|.|+|||++.++
T Consensus 5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~----~~l~~~V~d~d~~~- 78 (133)
T d2nq3a1 5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-V----SKLHFRVWSHQTLK- 78 (133)
T ss_dssp CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-T----CEEEEEEEECCSSS-
T ss_pred ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-c----ceeEEEEEEccCCC-
Confidence 58899999999999998888899999999999999999999999999999999999874 2 68999999999987
Q ss_pred CCceeEEEEEeCcccccc-CCcccce--EEEeEeCCCCCeeeeEEEEEEEee
Q 046822 85 SRNFLGKVRAPCSQLCKN-EGEATAQ--LYTLEKRSLFSHIRGEISLKLFVS 133 (971)
Q Consensus 85 ~d~~lG~~~i~l~~l~~~-~~~~~~~--w~~L~~~~~~~~~~G~i~l~~~~~ 133 (971)
+|++||++.|+|.++... ....... |+.|..........|+|.+.+...
T Consensus 79 ~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~ 130 (133)
T d2nq3a1 79 SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGL 130 (133)
T ss_dssp CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESE
T ss_pred CCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeE
Confidence 799999999999998543 2222223 445555444456789999888654
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.74 E-value=1.2e-17 Score=157.10 Aligned_cols=119 Identities=20% Similarity=0.330 Sum_probs=100.1
Q ss_pred eeEEEEEEEeeeCCCCCCc--------cCCCCcccCcEEEEEECCEE-EeeecccCCCCCeecceeEEEeeCCCcEEEEE
Q 046822 597 IGVLEMGILGATGLMPMKF--------KEGKGGSVDAYCVAKYGQKW-VRTRTVVDSLSPKWNEQYTWEVFDPCTVITVG 667 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~--------~~~~g~s~dpy~~~~~g~~~-~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~ 667 (971)
.|.|+|+|++|+||++++. ....|.+ ||||++++|++. .+|+++.++.||.|||.|.|++.+. ..|+|+
T Consensus 5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~-DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~-~~l~i~ 82 (136)
T d1gmia_ 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLL-DPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELA 82 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCC-CEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEE
T ss_pred EEEEEEEEEEeECCCcccccccccccccCCCCCc-CcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecC-CceEEE
Confidence 5999999999999997541 1235677 999999999866 5899999999999999999999764 589999
Q ss_pred EEeCCCCCccccCCCCCCCceeEEEEEEcccccCC--ceEeeeEeceecCCCCcccceEEEEEEEEeec
Q 046822 668 VFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESD--RVYTHSYPLLMLHPSGVKKMGELHLAVRFSCA 734 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 734 (971)
|||++.++ +|++||++.|+|+++..+ .....|++|. +.|+|++.++|+.+
T Consensus 83 V~d~~~~~---------~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------p~G~v~l~v~~~~~ 134 (136)
T d1gmia_ 83 VFHDAPIG---------YDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKVYVIIDLSGS 134 (136)
T ss_dssp EEECCSSS---------SCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEEEEEEEEEEE
T ss_pred EEEecCCC---------CceeEEEEEEEHHHhhhcCCcceeEEEeCC--------CCcEEEEEEEEEeC
Confidence 99999775 899999999999998543 4467899985 24999999999854
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=2.8e-17 Score=153.51 Aligned_cols=120 Identities=17% Similarity=0.246 Sum_probs=93.1
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-----CCEEEeeecccCC-CCCeecceeEEEeeCCCc-EEEEEEEe
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-----GQKWVRTRTVVDS-LSPKWNEQYTWEVFDPCT-VITVGVFD 670 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-----g~~~~rT~~~~~~-~nP~Wne~~~~~v~~~~~-~l~i~V~D 670 (971)
..|+|+|++|++|+..+. +..|++ ||||++++ +.+..||++++++ +||.|||.|.|.+..+.. .|.|+|||
T Consensus 4 ~~l~V~Vi~a~~L~~~~~-~~~~~~-DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D 81 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNK-NKNSIV-DPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED 81 (131)
T ss_dssp EEEEEEEEEEESCCCCC------CC-CEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred EEEEEEEEEeeCCCCCCC-CCCCCc-CeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEE
Confidence 479999999999986442 557788 99999998 3578999998665 799999999999876544 89999999
Q ss_pred CCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 671 NCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 671 ~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
+|.++ +|++||++.|+|+++..|. +|++|.+...... ..++|.+.++++
T Consensus 82 ~d~~~---------~d~~iG~~~i~l~~l~~g~---~~~~L~~~~g~~~-~~~~L~v~i~~~ 130 (131)
T d1qasa2 82 YDSSS---------KNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQH-PSATLFVKISIQ 130 (131)
T ss_dssp CCTTT---------CCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEE-EEEEEEEEEEEE
T ss_pred ecCCC---------CCcEEEEEEEEEeccCCCC---EEEECCCCCcCCC-CCCEEEEEEEEE
Confidence 99775 8999999999999998764 6899986543222 246777777653
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=8.7e-18 Score=156.26 Aligned_cols=119 Identities=21% Similarity=0.318 Sum_probs=99.1
Q ss_pred CCeEEEEEEEEeeCCCCC---CCCCCCCcEEEEEEcC---eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPK---DGEGSSSPFVEVEFEK---QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVF 77 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~---d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~ 77 (971)
++++|+|+|++|+||+.. |..|.+||||++.+++ ++++|+++.++.||.|||+|.|.+.+.. ...|.|.||
T Consensus 1 ss~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~---~~~L~v~V~ 77 (126)
T d1rlwa_ 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ---ENVLEITLM 77 (126)
T ss_dssp CCEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTS---CCEEEEEEE
T ss_pred CCcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcc---cCcEEEEEE
Confidence 468999999999999864 3357899999999975 6789999999999999999999987654 368999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
|++.. +|++||++.|+|+++.. +.....||+|.+. .+|+|.+++.+.+
T Consensus 78 d~d~~--~d~~lG~~~i~L~~l~~--~~~~~~~~~L~~~-----~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 78 DANYV--MDETLGTATFTVSSMKV--GEKKEVPFIFNQV-----TEMVLEMSLEVAS 125 (126)
T ss_dssp ECCSS--CCEEEEEEEEEGGGSCT--TCEEEEEEEETTT-----EEEEEEEEEECCC
T ss_pred ECCCC--CCCeEEEEEEEHHHccC--CCeEEEEEEccCC-----CeEEEEEEEEEEe
Confidence 99875 58999999999999853 3344589999643 3589988887753
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=2.9e-17 Score=153.83 Aligned_cols=102 Identities=26% Similarity=0.415 Sum_probs=89.5
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-----CCEEEeeecccCCCCCeecceeEEEeeCC--CcEEEEEEEe
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-----GQKWVRTRTVVDSLSPKWNEQYTWEVFDP--CTVITVGVFD 670 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-----g~~~~rT~~~~~~~nP~Wne~~~~~v~~~--~~~l~i~V~D 670 (971)
+.|.|+|++|+||++++. .|.+ ||||++.+ +....+|+++.++.||.|||.|.|++.++ ...|.|+|||
T Consensus 15 ~~L~V~V~~a~~L~~~d~---~g~~-DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d 90 (132)
T d1a25a_ 15 EVLIVVVRDAKNLVPMDP---NGLS-DPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWD 90 (132)
T ss_dssp SEEEEEEEEEESCCCCST---TSCC-CEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEE
T ss_pred CEEEEEEEeeeCCCCCCC---CCCc-CeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEe
Confidence 579999999999998654 7888 99999998 45679999999999999999999999764 3489999999
Q ss_pred CCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 671 NCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 671 ~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
+|.++ +|++||.+.|+|+++..+. ..+||+|..
T Consensus 91 ~d~~~---------~d~~iG~~~i~l~~l~~~~-~~~W~~L~~ 123 (132)
T d1a25a_ 91 WDLTS---------RNDFMGSLSFGISELQKAG-VDGWFKLLS 123 (132)
T ss_dssp CCSSS---------CCEEEEEEEEEHHHHTTCC-EEEEEECBC
T ss_pred cCCCC---------CCcEeEEEEEeHHHcCCCC-CCeEEECCC
Confidence 99775 8999999999999997654 478999975
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=5e-17 Score=149.80 Aligned_cols=101 Identities=18% Similarity=0.297 Sum_probs=88.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNS 85 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~ 85 (971)
+.|.|+|++|++|.++| .+||||++++++++.+|++++ +.||.|||.|.|.+.++. ..|.|+|||++.. +
T Consensus 2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~~----~~L~v~V~d~~~~--~ 71 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLD----LGLTVEVWNKGLI--W 71 (128)
T ss_dssp EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCCS----SEEEEEEEECCSS--C
T ss_pred eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeecccc----ceEEEEEEeCCCc--C
Confidence 67999999999999866 689999999999999999886 559999999999998775 6899999999875 5
Q ss_pred CceeEEEEEeCccccccCCcccceEEEeEeC
Q 046822 86 RNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116 (971)
Q Consensus 86 d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~ 116 (971)
|++||++.|+|+++...+.....+||+|..+
T Consensus 72 d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~ 102 (128)
T d2cjta1 72 DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQ 102 (128)
T ss_dssp EEEEEEEEEEGGGSCBCSSCCCCEEEECBC-
T ss_pred CcceEEEEEEehhhccCCCCCCCeeEECCcc
Confidence 8999999999999976555555689999764
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=2.4e-17 Score=154.41 Aligned_cols=107 Identities=27% Similarity=0.460 Sum_probs=92.0
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc-----CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE-----KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+.+|..|.+||||++.+. .++++|+++++|.||.|||+|.|.+.... ....|.|.|||
T Consensus 13 ~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~L~i~V~d 90 (132)
T d1a25a_ 13 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD--KDRRLSVEIWD 90 (132)
T ss_dssp SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGG--GGCEEEEEEEE
T ss_pred cCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccc--cCCEEeEEEEe
Confidence 467899999999999999999999999999993 45789999999999999999999987543 23579999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeC
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~ 116 (971)
++.++ +|++||++.|++.++... . ...||+|...
T Consensus 91 ~d~~~-~d~~iG~~~i~l~~l~~~--~-~~~W~~L~~~ 124 (132)
T d1a25a_ 91 WDLTS-RNDFMGSLSFGISELQKA--G-VDGWFKLLSQ 124 (132)
T ss_dssp CCSSS-CCEEEEEEEEEHHHHTTC--C-EEEEEECBCH
T ss_pred cCCCC-CCcEeEEEEEeHHHcCCC--C-CCeEEECCCC
Confidence 99986 789999999999998532 2 3589999753
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=2.3e-17 Score=154.03 Aligned_cols=111 Identities=29% Similarity=0.454 Sum_probs=92.3
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc---CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE---KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
..+.|.|+|++|+||+.++..|.+||||++++. .++++|+++++|.||.|||+|.|.+... ++....|.|+|||++
T Consensus 16 ~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~-~~~~~~L~v~V~d~~ 94 (130)
T d1dqva1 16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA-ELAQRKLHFSVYDFD 94 (130)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGG-GGSSCCCEEEEEECC
T ss_pred CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchH-HcCCCeEEEEEEEcC
Confidence 567999999999999999999999999999994 4579999999999999999999998643 345578999999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCcccceEEEeEeC
Q 046822 81 RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~ 116 (971)
.++ +|++||++.|++.............||+|.+.
T Consensus 95 ~~~-~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~ 129 (130)
T d1dqva1 95 RFS-RHDLIGQVVLDNLLELAEQPPDRPLWRDILEG 129 (130)
T ss_dssp SSS-CCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred CCC-CCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence 887 79999999998655433222223469999864
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=6e-17 Score=151.46 Aligned_cols=120 Identities=16% Similarity=0.195 Sum_probs=94.5
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCcc
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKN 677 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~ 677 (971)
+.|+|+|++|++|+..+. .+++ ||||++.+|++.+||++++++.||.|||.|.|++.+ ...|+|+|||++.++
T Consensus 6 ~~L~v~v~~A~~~~~~~~---~~~~-dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~-- 78 (133)
T d2nq3a1 6 SQLQITVISAKLKENKKN---WFGP-SPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLK-- 78 (133)
T ss_dssp EEEEEEEEEEEECCCC-----CCCC-CEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSS--
T ss_pred eEEEEEEEEeECCCcCCC---CCCc-CeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCC--
Confidence 789999999999986542 5667 999999999999999999999999999999999864 568999999999876
Q ss_pred ccCCCCCCCceeEEEEEEccccc---CCceEeeeEeceec-CCCCcccceEEEEEEEE
Q 046822 678 IINNSGGRDSRIGKVRIRLSTLE---SDRVYTHSYPLLML-HPSGVKKMGELHLAVRF 731 (971)
Q Consensus 678 ~~~~~~~~d~~iG~~~i~l~~l~---~~~~~~~~~~L~~~-~~~g~~~~G~i~l~~~f 731 (971)
+|++||++.|+|+++. .+.....+++|... ..++.+..|+|.+.++.
T Consensus 79 -------~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~ 129 (133)
T d2nq3a1 79 -------SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG 129 (133)
T ss_dssp -------CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred -------CCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEee
Confidence 8999999999999973 23322334444322 22344456988877753
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=9.1e-17 Score=148.07 Aligned_cols=117 Identities=20% Similarity=0.229 Sum_probs=93.0
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCc
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDK 676 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~ 676 (971)
++.|.|+|.+|++|.+ .++. ||||++++|+...+|.+++ +.||.|||.|.|++.++...|.|+|||++..
T Consensus 1 ~~~L~V~v~~a~~l~~------~~~~-dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-- 70 (128)
T d2cjta1 1 MSLLCVGVKKAKFDGA------QEKF-NTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLDLGLTVEVWNKGLI-- 70 (128)
T ss_dssp CEEEEEEEEEEECSSC------GGGC-EEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCCSSEEEEEEEECCSS--
T ss_pred CeEEEEEEEEEECCCC------CCCc-CeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccccceEEEEEEeCCCc--
Confidence 3689999999999987 3467 9999999999999999886 5599999999999999988999999999854
Q ss_pred cccCCCCCCCceeEEEEEEcccccC--CceEeeeEeceecCC--C----C--cccceEEEEEEEE
Q 046822 677 NIINNSGGRDSRIGKVRIRLSTLES--DRVYTHSYPLLMLHP--S----G--VKKMGELHLAVRF 731 (971)
Q Consensus 677 ~~~~~~~~~d~~iG~~~i~l~~l~~--~~~~~~~~~L~~~~~--~----g--~~~~G~i~l~~~f 731 (971)
+|++||++.|+|+++.. +.....||+|..... . | .....+|.+.++|
T Consensus 71 --------~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~ 127 (128)
T d2cjta1 71 --------WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 127 (128)
T ss_dssp --------CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred --------CCcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence 68999999999999853 233468999964211 1 1 1124567777766
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=1.7e-16 Score=148.19 Aligned_cols=120 Identities=23% Similarity=0.292 Sum_probs=94.4
Q ss_pred CeEEEEEEEEeeCCCC--CCCCCCCCcEEEEEEc-----CeEEEeeccc-CCCCCeeeeeeEEecCCCCCCCcceEEEEE
Q 046822 5 KEKLVVEVIAAHNLMP--KDGEGSSSPFVEVEFE-----KQILRTQVKY-KDLNPIWNEKLVFDVPDIAELPYKHIEVNV 76 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~--~d~~g~~dPyv~v~~~-----~~~~~T~~~~-~t~nP~wne~f~f~v~~~~~l~~~~L~i~V 76 (971)
..+|.|+|++|++|+. ++.+|.+||||++++. .++++|++++ +++||.|||+|.|.+..+.. ..|.|+|
T Consensus 3 p~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~---~~L~~~V 79 (131)
T d1qasa2 3 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDL---ALVRFMV 79 (131)
T ss_dssp CEEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGG---CEEEEEE
T ss_pred cEEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchh---ceEEEEE
Confidence 4689999999999975 4557789999999994 4688999876 45799999999999876552 6799999
Q ss_pred EeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEee
Q 046822 77 FNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVS 133 (971)
Q Consensus 77 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 133 (971)
||++.++ +|++||++.|+|.++.. + .+|++|.......-..+.|.+++.+.
T Consensus 80 ~D~d~~~-~d~~iG~~~i~l~~l~~-g----~~~~~L~~~~g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 80 EDYDSSS-KNDFIGQSTIPWNSLKQ-G----YRHVHLLSKNGDQHPSATLFVKISIQ 130 (131)
T ss_dssp EECCTTT-CCEEEEEEEEEGGGBCC-E----EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred EEecCCC-CCcEEEEEEEEEeccCC-C----CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence 9999986 79999999999999853 1 36899987655444567888888764
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=7.2e-18 Score=160.47 Aligned_cols=111 Identities=32% Similarity=0.538 Sum_probs=93.5
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC--------------eEEEeecccCCCCCeeeeeeEEecCCCCCCCcc
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK--------------QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYK 70 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~--------------~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~ 70 (971)
.+.|.|+|++|+||+.+|..|.+||||++++.. +++||++++++.||.|||+|.|.....+++...
T Consensus 17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~ 96 (142)
T d1rh8a_ 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence 468999999999999999999999999999842 236799999999999999999986544445567
Q ss_pred eEEEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCC
Q 046822 71 HIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSL 118 (971)
Q Consensus 71 ~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~ 118 (971)
.|.|.|||++.++ +|++||++.|+|.++... ....+||+|+++..
T Consensus 97 ~L~i~V~d~d~~~-~~~~lG~~~i~L~~l~~~--~~~~~W~~L~~~~~ 141 (142)
T d1rh8a_ 97 TLEVTVWDYDRFS-SNDFLGEVLIDLSSTSHL--DNTPRWYPLKEQTE 141 (142)
T ss_dssp EEEEEEEEECSSS-CEEEEEEEEEETTSCGGG--TTCCEEEECBCCCC
T ss_pred EEEEEEEEecCCC-CCeeeEEEEEEhHHcCCC--CCceEEEECcCcCC
Confidence 8999999999987 789999999999998653 23358999998753
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=1.3e-16 Score=151.46 Aligned_cols=104 Identities=24% Similarity=0.335 Sum_probs=91.1
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE---CCEEEeeecccCCCCCeecceeEEEeeC---CCcEEEEEEE
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY---GQKWVRTRTVVDSLSPKWNEQYTWEVFD---PCTVITVGVF 669 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~---g~~~~rT~~~~~~~nP~Wne~~~~~v~~---~~~~l~i~V~ 669 (971)
..+.|+|+|++|+||++++ ..|.+ ||||++.+ +.+.++|++++++.||.|||.|.|++.. ....|.|+||
T Consensus 32 ~~~~L~V~V~~a~~L~~~~---~~g~~-dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~ 107 (143)
T d1rsya_ 32 QNNQLLVGIIQAAELPALD---MGGTS-DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVY 107 (143)
T ss_dssp TTTEEEEEEEEEESCCCCS---TTSCC-CEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEE
T ss_pred CCCEEEEEEEEccCCCCCC---CCCCC-CeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEE
Confidence 3468999999999998764 47888 99999998 4567899999999999999999998863 2458999999
Q ss_pred eCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 670 DNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 670 D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
|++.++ ++++||.+.|+|+++..+....+||+|.
T Consensus 108 d~d~~~---------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 141 (143)
T d1rsya_ 108 DFDRFS---------KHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp ECCSSS---------CCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred EcCCCC---------CCcEEEEEEEEchhccCCCCCccEEeCC
Confidence 999775 8899999999999998888888999996
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=1.3e-16 Score=151.54 Aligned_cols=108 Identities=31% Similarity=0.497 Sum_probs=92.2
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc---CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE---KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
..+.|.|+|++|+||+.++..|.+||||++.+. .+.++|++++++.||.|||+|.|.+... ++....|.|+|||++
T Consensus 32 ~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~-~l~~~~L~i~V~d~d 110 (143)
T d1rsya_ 32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS-ELGGKTLVMAVYDFD 110 (143)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHH-HHTTCEEEEEEEECC
T ss_pred CCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEee-ccCCceEEEEEEEcC
Confidence 456899999999999999999999999999994 4578999999999999999999987643 344578999999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCcccceEEEeEe
Q 046822 81 RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEK 115 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~ 115 (971)
.++ ++++||++.|+|.++.. +....+||+|+.
T Consensus 111 ~~~-~~~~iG~~~i~L~~~~~--~~~~~~W~~L~s 142 (143)
T d1rsya_ 111 RFS-KHDIIGEFKVPMNTVDF--GHVTEEWRDLQS 142 (143)
T ss_dssp SSS-CCEEEEEEEEEGGGCCC--SSCEEEEEECBC
T ss_pred CCC-CCcEEEEEEEEchhccC--CCCCccEEeCCC
Confidence 986 78999999999999854 233458999963
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=2e-16 Score=146.48 Aligned_cols=108 Identities=21% Similarity=0.460 Sum_probs=87.5
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc-----CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE-----KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+.++..+.+||||++.+. .++++|++++++.||.|||+|.|......++....|.|+|||
T Consensus 12 ~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d 91 (125)
T d2bwqa1 12 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD 91 (125)
T ss_dssp TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEE
T ss_pred CCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEE
Confidence 457899999999999999999999999999993 357999999999999999999998544555666789999999
Q ss_pred CCCCCC-CCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 79 ERRSSN-SRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 79 ~~~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
++.++. ++++||++.|+|+++..... .+||+|+
T Consensus 92 ~~~~~~~~~~~iG~~~i~l~~~~~~~~---~~Wy~L~ 125 (125)
T d2bwqa1 92 QARVREEESEFLGEILIELETALLDDE---PHWYKLQ 125 (125)
T ss_dssp C-------CEEEEEEEEEGGGCCCSSC---EEEEECC
T ss_pred CCCCCCCCCeeEEEEEEEchhcCCCCC---CEEEeCc
Confidence 997642 45699999999999865332 4799985
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=8.1e-16 Score=143.30 Aligned_cols=105 Identities=23% Similarity=0.213 Sum_probs=86.1
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE---CCEEEeeecccCCCCCeecceeEEEeeCC---CcEEEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY---GQKWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITVGV 668 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~---g~~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i~V 668 (971)
+..+.|.|+|++|+||+..+ ..|.+ ||||++.+ +.+.+||++++++.||.|||.|.|.+... ...|.|+|
T Consensus 15 ~~~~~L~V~V~~a~~L~~~~---~~g~~-dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V 90 (130)
T d1dqva1 15 YGSDQLVVRILQALDLPAKD---SNGFS-DPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSV 90 (130)
T ss_dssp SSSCEEEEEEEEEECCCCCS---TTSCC-CEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEE
T ss_pred CCCCEEEEEEEeeeCCcccc---CCCCc-ceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEE
Confidence 44579999999999998764 47888 99999998 35679999999999999999999998643 34799999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEccc-cc-CCceEeeeEece
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLST-LE-SDRVYTHSYPLL 712 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~-l~-~~~~~~~~~~L~ 712 (971)
||++.++ +|++||++.|++.. +. .......||+|.
T Consensus 91 ~d~~~~~---------~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~ 127 (130)
T d1dqva1 91 YDFDRFS---------RHDLIGQVVLDNLLELAEQPPDRPLWRDIL 127 (130)
T ss_dssp EECCSSS---------CCCEEEEEECCCTTGGGSSCSSCCCCEECB
T ss_pred EEcCCCC---------CCceEEEEEECchhhhhcCCCCCcEEEecc
Confidence 9999776 89999999998654 32 222335799997
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.6e-15 Score=142.86 Aligned_cols=108 Identities=21% Similarity=0.353 Sum_probs=88.7
Q ss_pred CCeEEEEEEEEeeCCCCCCCCC-CCCcEEEEEEc---CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEG-SSSPFVEVEFE---KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g-~~dPyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
..+.|.|+|++|+||+.++..+ .+||||++.+. .++++|++++++.||.|||+|.|......++....|.|.|||+
T Consensus 20 ~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~ 99 (138)
T d1ugka_ 20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF 99 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred CCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEEC
Confidence 3568999999999999988665 57999999994 4688999999999999999999975545566678999999999
Q ss_pred CCCCCCCceeEEEEEeCccccccCCcccceEEEe
Q 046822 80 RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTL 113 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L 113 (971)
+.++ ++++||++.|+|+++...+.+.. .|..+
T Consensus 100 d~~~-~~~~iG~~~i~L~~~~~~~~~~~-~~~~~ 131 (138)
T d1ugka_ 100 DRFS-RDDIIGEVLIPLSGIELSEGKML-MNREI 131 (138)
T ss_dssp CSSC-CCCCCEEEEEECTTCCCTTCCEE-EEEEC
T ss_pred CCCC-CCcEEEEEEEEcccccCCCCeEE-EEeec
Confidence 9987 79999999999999854443332 34443
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.5e-15 Score=140.46 Aligned_cols=106 Identities=24% Similarity=0.364 Sum_probs=81.8
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-----CCEEEeeecccCCCCCeecceeEEEeeCC----CcEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-----GQKWVRTRTVVDSLSPKWNEQYTWEVFDP----CTVIT 665 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-----g~~~~rT~~~~~~~nP~Wne~~~~~v~~~----~~~l~ 665 (971)
+..+.|.|+|++|+||++.+ ..|.+ ||||++.+ +....||++++++.||.|||.|.|....+ ...|.
T Consensus 11 ~~~~~L~V~V~~a~~L~~~~---~~~~~-dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~ 86 (125)
T d2bwqa1 11 KVGHQLIVTILGAKDLPSRE---DGRPR-NPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLE 86 (125)
T ss_dssp TTTTEEEEEEEEEESCCCCT---TSCCB-CEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEE
T ss_pred CCCCEEEEEEEEeECCCCcC---CCCCC-CEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEE
Confidence 33468999999999999764 36778 99999998 24568999999999999999999974322 33899
Q ss_pred EEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 666 VGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 666 i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
|+|||.+.++ .+++++||++.|+|+++..+.. .+||+|.
T Consensus 87 i~v~d~~~~~-------~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~ 125 (125)
T d2bwqa1 87 ITLWDQARVR-------EEESEFLGEILIELETALLDDE-PHWYKLQ 125 (125)
T ss_dssp EEEEEC--------------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred EEEEECCCCC-------CCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence 9999998653 2356799999999999875443 6899984
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=1.7e-15 Score=142.69 Aligned_cols=94 Identities=30% Similarity=0.424 Sum_probs=76.7
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc--C---eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE--K---QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+.++..+.+||||++.+. + .+++|++++++.||.|||+|.|.+.. ..+....|.|.|||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~-~~~~~~~l~i~v~d 91 (138)
T d1w15a_ 13 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPC-ESLEEISVEFLVLD 91 (138)
T ss_dssp TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCS-SSSTTEEEEEEEEE
T ss_pred CCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecH-HHhCccEEEEEEEe
Confidence 457899999999999999989999999999983 2 35789999999999999999999864 34566789999999
Q ss_pred CCCCCCCCceeEEEEEeCccc
Q 046822 79 ERRSSNSRNFLGKVRAPCSQL 99 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l 99 (971)
++.++ ++++||++.|++...
T Consensus 92 ~~~~~-~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 92 SERGS-RNEVIGRLVLGATAE 111 (138)
T ss_dssp CCTTS-CCEEEEEEEESTTCC
T ss_pred CCCCC-CCCEEEEEEEcchhC
Confidence 99987 799999999999864
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=2.2e-15 Score=142.01 Aligned_cols=94 Identities=29% Similarity=0.506 Sum_probs=83.3
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc-----CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE-----KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+.++..+.+||||++++. ..+++|++++++.||.|||+|.|.+.. .++....|.|.|||
T Consensus 13 ~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~-~~l~~~~l~v~v~~ 91 (137)
T d2cm5a1 13 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKH-SDLAKKSLDISVWD 91 (137)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCG-GGGGGCEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEH-HHccccEEEEEeee
Confidence 567899999999999999989999999999984 347899999999999999999999864 34566799999999
Q ss_pred CCCCCCCCceeEEEEEeCccc
Q 046822 79 ERRSSNSRNFLGKVRAPCSQL 99 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l 99 (971)
++.++ ++++||++.|++..+
T Consensus 92 ~~~~~-~~~~iG~~~i~l~~~ 111 (137)
T d2cm5a1 92 YDIGK-SNDYIGGCQLGISAK 111 (137)
T ss_dssp CCSSS-CCEEEEEEEEETTCC
T ss_pred CCCCC-CCCEEEEEEeCcccc
Confidence 99876 799999999999864
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=1.8e-15 Score=145.90 Aligned_cols=111 Identities=28% Similarity=0.395 Sum_probs=92.6
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..++|.|+|++|+||+.++..+.+||||++.+.. ..++|++++++.||.|||+|.|.+... ++....|.|.|||
T Consensus 23 ~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~-~l~~~~l~i~v~d 101 (157)
T d1uowa_ 23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE-QIQKVQVVVTVLD 101 (157)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGG-GGGGCEEEEEEEE
T ss_pred CCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHH-HcCccEEEEEEcc
Confidence 4579999999999999999999999999999853 256899999999999999999998754 4556789999999
Q ss_pred CCCCCCCCceeEEEEEeCccc----------cccCCcccceEEEeEeC
Q 046822 79 ERRSSNSRNFLGKVRAPCSQL----------CKNEGEATAQLYTLEKR 116 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l----------~~~~~~~~~~w~~L~~~ 116 (971)
++.++ ++++||++.|++... .........+||+|+.+
T Consensus 102 ~~~~~-~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~ 148 (157)
T d1uowa_ 102 YDKIG-KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 148 (157)
T ss_dssp CCSSS-CCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred cCCCC-CCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence 99987 799999999999764 22233344589999764
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=8.7e-17 Score=152.81 Aligned_cols=104 Identities=28% Similarity=0.360 Sum_probs=88.2
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC--------------EEEeeecccCCCCCeecceeEEEeeC----
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ--------------KWVRTRTVVDSLSPKWNEQYTWEVFD---- 659 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~--------------~~~rT~~~~~~~nP~Wne~~~~~v~~---- 659 (971)
|.|.|+|++|+||++.+ ..|.+ ||||++.+.+ ...||++++++.||.|||.|.|.+..
T Consensus 18 ~~L~V~V~~A~~L~~~d---~~g~~-DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~ 93 (142)
T d1rh8a_ 18 GNLIIHILQARNLVPRD---NNGYS-DPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQL 93 (142)
T ss_dssp TEEEEEEEEEESCCCCS---SSSCS-CCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHH
T ss_pred CEEEEEEEEeECCCCcC---CCCCC-CcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeeccccc
Confidence 68999999999999865 47888 9999999821 12689999999999999999998543
Q ss_pred CCcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceec
Q 046822 660 PCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLML 714 (971)
Q Consensus 660 ~~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~ 714 (971)
....|.|+|||+|.++ +|++||++.|+|+++..+....+||+|...
T Consensus 94 ~~~~L~i~V~d~d~~~---------~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~ 139 (142)
T d1rh8a_ 94 MKKTLEVTVWDYDRFS---------SNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp TTCEEEEEEEEECSSS---------CEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred CCCEEEEEEEEecCCC---------CCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence 3458999999999776 899999999999999777777899999853
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=3.3e-15 Score=140.62 Aligned_cols=105 Identities=18% Similarity=0.162 Sum_probs=89.0
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC----CEEEeeecccCCCCCeecceeEEEeeCC---CcEEEEEE
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG----QKWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITVGV 668 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g----~~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i~V 668 (971)
..+.|.|+|++|++|+. .|.+ ||||++.+. ....+|++++++.||.|||.|.|++... ...|.|+|
T Consensus 24 ~~~~L~V~v~~a~~L~~------~g~~-dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V 96 (138)
T d1wfma_ 24 QKAELFVTRLEAVTSNH------DGGC-DCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTL 96 (138)
T ss_dssp TTTEEEEEEEEEECCCC------SSCC-CEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEE
T ss_pred CCCEEEEEEEEcCCCCC------CCCc-CcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEE
Confidence 34689999999999953 5678 999999983 2358899999999999999999998642 34899999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCC
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHP 716 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~ 716 (971)
||++.++ ++++||++.|+|.++..+...+.||+|...++
T Consensus 97 ~d~~~~~---------~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~~ 135 (138)
T d1wfma_ 97 RTCDRFS---------RHSVAGELRLGLDGTSVPLGAAQWGELKTSGP 135 (138)
T ss_dssp EECCSSC---------TTSCSEEEEEESSSSSSCTTCCEEEECCCCSC
T ss_pred eeecccc---------cceeeeEEEEEhHHccCCCCceEeEeCCCCCC
Confidence 9999775 89999999999999977666789999986543
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=5.7e-15 Score=138.97 Aligned_cols=107 Identities=21% Similarity=0.284 Sum_probs=90.0
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
..+.|.|+|++|++|.. .|.+||||++.+.+ ..++|++++++.||+|||+|.|.+.. .++....|.|.|||+
T Consensus 24 ~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~-~~l~~~~L~~~V~d~ 99 (138)
T d1wfma_ 24 QKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAE-EELPTATLTLTLRTC 99 (138)
T ss_dssp TTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCT-TSSTTCEEEEEEEEC
T ss_pred CCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeee-hhccceEEEEEEeee
Confidence 45789999999999953 57899999999953 35889999999999999999999864 356678999999999
Q ss_pred CCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 80 RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
+.++ ++++||++.|+|.++... .....|+.|.+..
T Consensus 100 ~~~~-~~~~iG~~~i~L~~l~~~--~~~~~W~~L~~~~ 134 (138)
T d1wfma_ 100 DRFS-RHSVAGELRLGLDGTSVP--LGAAQWGELKTSG 134 (138)
T ss_dssp CSSC-TTSCSEEEEEESSSSSSC--TTCCEEEECCCCS
T ss_pred cccc-cceeeeEEEEEhHHccCC--CCceEeEeCCCCC
Confidence 9987 799999999999998532 2345899998764
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.1e-14 Score=135.06 Aligned_cols=104 Identities=23% Similarity=0.278 Sum_probs=82.2
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE---CCEEEeeecccCCCCCeecceeEEEeeCC----CcEEEEEEE
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY---GQKWVRTRTVVDSLSPKWNEQYTWEVFDP----CTVITVGVF 669 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~---g~~~~rT~~~~~~~nP~Wne~~~~~v~~~----~~~l~i~V~ 669 (971)
.+.|.|+|++|+||+..+. ..+.+ ||||++.+ +...+||++++++.||.|||.|.|..... ...|+|+||
T Consensus 21 ~~~L~V~V~~a~~L~~~d~--~~~~~-dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~ 97 (138)
T d1ugka_ 21 RKAFVVNIKEARGLPAMDE--QSMTS-DPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTIL 97 (138)
T ss_dssp GTEEEEEEEEEESCCCCBT--TTTBC-EEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEE
T ss_pred CCEEEEEEEEecCCCCCCC--CCCcc-ceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEE
Confidence 4689999999999998653 22356 99999999 45678999999999999999999974432 238999999
Q ss_pred eCCCCCccccCCCCCCCceeEEEEEEcccccC-CceEeeeEece
Q 046822 670 DNCSLDKNIINNSGGRDSRIGKVRIRLSTLES-DRVYTHSYPLL 712 (971)
Q Consensus 670 D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~-~~~~~~~~~L~ 712 (971)
|+|.++ +|++||++.|+|+++.. ......|+.+.
T Consensus 98 d~d~~~---------~~~~iG~~~i~L~~~~~~~~~~~~~~~~~ 132 (138)
T d1ugka_ 98 SFDRFS---------RDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp EECSSC---------CCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred ECCCCC---------CCcEEEEEEEEcccccCCCCeEEEEeecc
Confidence 999775 89999999999999853 33333444443
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.55 E-value=2.5e-14 Score=134.65 Aligned_cols=104 Identities=21% Similarity=0.314 Sum_probs=84.9
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-----CCEEEeeecccCCCCCeecceeEEEeeCC---CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-----GQKWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-----g~~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i 666 (971)
+..|.|.|+|++|+||+..+. .|.+ ||||++.+ .....||++++++.||.|||.|.|++... ...|.|
T Consensus 12 ~~~~~L~V~v~~a~nL~~~~~---~~~~-dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v 87 (137)
T d2cm5a1 12 TQQGGLIVGIIRCVHLAAMDA---NGYS-DPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDI 87 (137)
T ss_dssp TTTTEEEEEEEEEESCCCCST---TSCC-CEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEE
T ss_pred CCCCEEEEEEEEEECCCCCCC---CCCc-CeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEE
Confidence 445799999999999987643 6778 99999998 23458999999999999999999998743 348999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
.|||++.++ +|++||++.|++..+..+. .+||+|..
T Consensus 88 ~v~~~~~~~---------~~~~iG~~~i~l~~~~~~~--~~W~~l~~ 123 (137)
T d2cm5a1 88 SVWDYDIGK---------SNDYIGGCQLGISAKGERL--KHWYECLK 123 (137)
T ss_dssp EEEECCSSS---------CCEEEEEEEEETTCCHHHH--HHHHHHHH
T ss_pred EeeeCCCCC---------CCCEEEEEEeCccccCcch--hhhhhHhh
Confidence 999999775 8999999999998764332 56777663
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.55 E-value=1.8e-14 Score=135.60 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=73.4
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE--CC---EEEeeecccCCCCCeecceeEEEeeCCC---cEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY--GQ---KWVRTRTVVDSLSPKWNEQYTWEVFDPC---TVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~--g~---~~~rT~~~~~~~nP~Wne~~~~~v~~~~---~~l~i 666 (971)
+..|.|.|+|++|+||++++ ..|.+ ||||++.+ +. ...||++++++.||.|||.|.|.+.... ..|.|
T Consensus 12 ~~~~~L~V~v~~a~~L~~~~---~~~~~-dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i 87 (138)
T d1w15a_ 12 STTNTLTVVVLKARHLPKSD---VSGLS-DPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEF 87 (138)
T ss_dssp TTTTEEEEEEEEEESCC---------CC-CEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEE
T ss_pred CCCCEEEEEEEEeECCCCCC---CCCCc-CEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEE
Confidence 34578999999999999864 36778 99999998 33 3468999999999999999999986422 37999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccc
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTL 699 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l 699 (971)
+|||++.++ ++++||++.|++...
T Consensus 88 ~v~d~~~~~---------~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 88 LVLDSERGS---------RNEVIGRLVLGATAE 111 (138)
T ss_dssp EEEECCTTS---------CCEEEEEEEESTTCC
T ss_pred EEEeCCCCC---------CCCEEEEEEEcchhC
Confidence 999999775 899999999999864
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=2.4e-15 Score=143.06 Aligned_cols=94 Identities=28% Similarity=0.377 Sum_probs=83.1
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+.++..|.+||||++.+.. .+++|++++++.||.|||+|.|.+.. .++....|.|.|||
T Consensus 18 ~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~-~~~~~~~l~v~v~d 96 (145)
T d1dqva2 18 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAP-ESVENVGLSIAVVD 96 (145)
T ss_dssp TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCS-GGGGSCCCCCEEEE
T ss_pred CCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEeh-hhcCCCEEEEEEEe
Confidence 4679999999999999999899999999999863 26789999999999999999998764 34556789999999
Q ss_pred CCCCCCCCceeEEEEEeCccc
Q 046822 79 ERRSSNSRNFLGKVRAPCSQL 99 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l 99 (971)
++.++ ++++||++.|+++.+
T Consensus 97 ~~~~~-~~~~iG~~~i~l~~~ 116 (145)
T d1dqva2 97 YDCIG-HNEVIGVCRVGPEAA 116 (145)
T ss_dssp CCSSS-CCEEEEECCCSSCTT
T ss_pred cCCCC-CCcEEEEEEECchHc
Confidence 99987 789999999999876
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=6.4e-14 Score=134.79 Aligned_cols=106 Identities=27% Similarity=0.333 Sum_probs=86.3
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC--CE---EEeeecccCCCCCeecceeEEEeeCC---CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG--QK---WVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g--~~---~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i 666 (971)
+..|.|.|+|++|+||+..+ ..|.+ ||||++.+. +. ..+|++++++.||.|||.|.|++... ...|.|
T Consensus 22 ~~~~~L~V~V~~a~~L~~~~---~~~~~-dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i 97 (157)
T d1uowa_ 22 PTAGKLTVVILEAKNLKKMD---VGGLS-DPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVV 97 (157)
T ss_dssp TTTTEEEEEEEEEESCCCCS---TTSCC-CEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEE
T ss_pred CCCCEEEEEEEEEEEccccc---CCCCC-CeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEE
Confidence 34578999999999998754 36788 999999982 32 36899999999999999999998754 338999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccc------------cCCceEeeeEecee
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTL------------ESDRVYTHSYPLLM 713 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l------------~~~~~~~~~~~L~~ 713 (971)
+|||.+.++ ++++||++.|++... ...+.+..||+|..
T Consensus 98 ~v~d~~~~~---------~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~ 147 (157)
T d1uowa_ 98 TVLDYDKIG---------KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147 (157)
T ss_dssp EEEECCSSS---------CCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred EEcccCCCC---------CCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence 999999876 899999999999763 12345678998863
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.48 E-value=6e-14 Score=128.35 Aligned_cols=111 Identities=12% Similarity=0.143 Sum_probs=85.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe-----EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-----ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERR 81 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~-----~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~ 81 (971)
.|+|.|....--+.+..+|.+||||+|.+++. .++|+++++|+||+|||+|+|.+.+. ..|.|.|||++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~~-----~~l~i~V~d~d- 77 (123)
T d1bdya_ 4 FLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEG-----RVIQIVLMRAA- 77 (123)
T ss_dssp EEEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCTT-----CEEEEEEEEET-
T ss_pred eEEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEccc-----cEEEEEEEEcc-
Confidence 45555544422233455789999999999643 46799999999999999999998753 58999999954
Q ss_pred CCCCCceeEEEEEeCccccc---cCCcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 82 SSNSRNFLGKVRAPCSQLCK---NEGEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 82 ~~~~d~~lG~~~i~l~~l~~---~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
++++|.+.|++..+.. ..+.....|++|++ +|.|++++.|..
T Consensus 78 ----d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~-------~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 78 ----EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP-------QAKVLMCVQYFL 122 (123)
T ss_dssp ----TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-------SCEEEEEEEEEE
T ss_pred ----ccccCccEEehhheeeccccCCCcccEEEeCCC-------CEEEEEEEEEec
Confidence 6899999999999843 23445568999963 599999998864
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.45 E-value=1.7e-13 Score=125.29 Aligned_cols=104 Identities=13% Similarity=0.276 Sum_probs=82.5
Q ss_pred EEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE-----EEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCC
Q 046822 601 EMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-----WVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLD 675 (971)
Q Consensus 601 ~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-----~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~ 675 (971)
.+.++.+..++. ..|.+ ||||++++++. ..+|+++++|+||+|||+|.|.|.+ ...|.|.|||+|
T Consensus 8 ~~~~~~~~~~~~-----~~~~~-dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d--- 77 (123)
T d1bdya_ 8 SFNSYELGSLQA-----EDDAS-QPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA--- 77 (123)
T ss_dssp EEEEEECCTTCC-----CCCSC-CCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET---
T ss_pred EEEEeecccCCC-----CCCCC-CCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc---
Confidence 344455555543 25677 99999999532 3678899999999999999999976 468999999974
Q ss_pred ccccCCCCCCCceeEEEEEEccccc-----CCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 676 KNIINNSGGRDSRIGKVRIRLSTLE-----SDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 676 ~~~~~~~~~~d~~iG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
|+++|.+.|++.+|. .+...+.|++|. +.|+|++.++|-
T Consensus 78 ----------d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--------~~Gkl~l~v~~f 121 (123)
T d1bdya_ 78 ----------EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--------PQAKVLMCVQYF 121 (123)
T ss_dssp ----------TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--------SSCEEEEEEEEE
T ss_pred ----------ccccCccEEehhheeeccccCCCcccEEEeCC--------CCEEEEEEEEEe
Confidence 689999999999873 466778999985 359999999874
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=2.3e-14 Score=136.16 Aligned_cols=104 Identities=25% Similarity=0.363 Sum_probs=83.3
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-----EEEeeecccCCCCCeecceeEEEeeC---CCcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-----KWVRTRTVVDSLSPKWNEQYTWEVFD---PCTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-----~~~rT~~~~~~~nP~Wne~~~~~v~~---~~~~l~i 666 (971)
+..|.|.|+|++|+||+..+. .|.+ ||||++.+.+ ...||++++++.||.|||.|.|++.. ....|.|
T Consensus 17 ~~~~~L~V~V~~a~nL~~~~~---~~~~-dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v 92 (145)
T d1dqva2 17 PTAGLLTVTIIKASNLKAMDL---TGFS-DPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSI 92 (145)
T ss_dssp TTTTEEEEEEEEEESCCCCSS---SSCC-CEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCC
T ss_pred CCCCEEEEEEEEEeCCCCcCC---CCCc-CceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEE
Confidence 445899999999999987643 6788 9999999842 24789999999999999999998763 2347999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
.|||++.++ +|++||++.|+|..+... ...+|++|.
T Consensus 93 ~v~d~~~~~---------~~~~iG~~~i~l~~~~~~-~~~~W~~l~ 128 (145)
T d1dqva2 93 AVVDYDCIG---------HNEVIGVCRVGPEAADPH-GREHWAEML 128 (145)
T ss_dssp EEEECCSSS---------CCEEEEECCCSSCTTCHH-HHHHHHTSS
T ss_pred EEEecCCCC---------CCcEEEEEEECchHcCch-hhHHHHHHH
Confidence 999999775 899999999999876322 124566654
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=5.9e-12 Score=114.60 Aligned_cols=108 Identities=19% Similarity=0.368 Sum_probs=78.5
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-C-----CEEEeeecc--cCCCCCeecce-eEE-EeeCCCc-EEEEE
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-G-----QKWVRTRTV--VDSLSPKWNEQ-YTW-EVFDPCT-VITVG 667 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-g-----~~~~rT~~~--~~~~nP~Wne~-~~~-~v~~~~~-~l~i~ 667 (971)
.|.|+|++|++|+.. +. ||||++++ | ....+|+++ .+++||.|||. |.| .+..+.. .|.|.
T Consensus 2 tl~V~Visaq~L~~~-------~~-dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~ 73 (122)
T d2zkmx2 2 TLSITVISGQFLSER-------SV-RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVA 73 (122)
T ss_dssp EEEEEEEEEESCCSS-------CC-CEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEE
T ss_pred EEEEEEEEeeCCCCC-------CC-CcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEE
Confidence 689999999999742 45 99999998 3 234556554 67899999976 433 3555443 89999
Q ss_pred EEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 668 VFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
|||++ |++||++.|||+.|..|. ++.||.+...... ..+.|.+.+++
T Consensus 74 V~D~d-------------~~~lG~~~ipl~~l~~Gy---R~vpL~~~~g~~l-~~~~L~v~i~~ 120 (122)
T d2zkmx2 74 VMEEG-------------NKFLGHRIIPINALNSGY---HHLCLHSESNMPL-TMPALFIFLEM 120 (122)
T ss_dssp EEETT-------------TEEEEEEEEEGGGBCCEE---EEEEEECTTCCEE-EEEEEEEEEEE
T ss_pred EECCC-------------CCEEEEEEEEcccCcCCc---eEEEccCCCcCCC-CCceEEEEEEE
Confidence 99974 689999999999998875 7789986443211 23555555543
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.3e-11 Score=112.23 Aligned_cols=109 Identities=26% Similarity=0.384 Sum_probs=81.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC------eEEEeec--ccCCCCCeeeee-eEEe-cCCCCCCCcceEEEEE
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK------QILRTQV--KYKDLNPIWNEK-LVFD-VPDIAELPYKHIEVNV 76 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~--~~~t~nP~wne~-f~f~-v~~~~~l~~~~L~i~V 76 (971)
+|.|+|++|++|+.+ .+||||+|++.+ .+.+|++ ..+++||.|||. |.|. +..++. ..|.|.|
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l---~~L~f~V 74 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL---ASLRVAV 74 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGG---CEEEEEE
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcc---cEEEEEE
Confidence 689999999999854 589999999842 3344444 468999999976 4443 444442 5899999
Q ss_pred EeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 77 FNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 77 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
||++ |+|||++.+|++.+... .+|++|.......-..+.|.+.+.+
T Consensus 75 ~D~d-----~~~lG~~~ipl~~l~~G-----yR~vpL~~~~g~~l~~~~L~v~i~~ 120 (122)
T d2zkmx2 75 MEEG-----NKFLGHRIIPINALNSG-----YHHLCLHSESNMPLTMPALFIFLEM 120 (122)
T ss_dssp EETT-----TEEEEEEEEEGGGBCCE-----EEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred ECCC-----CCEEEEEEEEcccCcCC-----ceEEEccCCCcCCCCCceEEEEEEE
Confidence 9964 78999999999998531 3679998876554456777777665
|