Citrus Sinensis ID: 046832

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MKKETAIKAFIFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELLLGHGTYSSGRLELIALHQQRQLDSRHDFVEYFKFKKGRDSPGETRSALLVVAALVATTSFQFGVNPPGGNAVAFALFMFFNSLGFKLSIYMIIILTTKFPLQLGLQLCFLAMYFTYDTAVIATTPVGIRIFIIVTEAIIPALIPLTARW
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccHHHHHHHcccHHHHHHHcccccccccccHHHHHHHHHccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccccEcccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccEcccccccccHHHHHHHccccEEEEEEccccccccccccHHHHHHHHcHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEEHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MKKETAIKAFIFLVKLKAlrkgnplhvasayghvDFVKEIINVrpdlahevnqdgfspmhiassIGHTGVVRELLKVEQKLChqqgpekntplhcAAIKGKVHVLSEMLSacpeciedvTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELLlghgtyssGRLELIALHQQRQLDSRHDFVEYfkfkkgrdspgetRSALLVVAALVATtsfqfgvnppggnAVAFALFMFFNSLGFKLSIYMIIILTTKFPLQLGLQLCFLAMYFTYDTAVIATTPVGIRIFIIVTEAIIpalipltarw
Flexible Loop (DISEMBL)
MKKETAIKAFIFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHqqgpekntplHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELLLGHGTYSSGRLELIALHQQRQLDSRHDFVEYFKFkkgrdspgetRSALLVVAALVATTSFQFGVNPPGGNAVAFALFMFFNSLGFKLSIYMIIILTTKFPLQLGLQLCFLAMYFTYDTAVIATTPVGIRIFIIVTEAIIPALIPLTARW
Low Complexity Region (SEG)
MKKETAIKAFIFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELLLGHGTYSSGRLELIALHQQRQLDSRHDFVEYFKFKKGRDSPGETRSallvvaalvaTTSFQFGVNPPGGNAVAFALFMFFNSLGFKLSIYMIIILTTKFPLQLGLQLCFLAMYFTYDTAVIATTPVGIRIFIIVTEAIIPALIPLTARW
Disordered region (IsUnstruct)
*****AIKAFIFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELLLGHGTYSSGRLELIALHQQRQLDSRHDFVEYFKFKK********RSALLVVAALVATTSFQFGVNPPGGNAVAFALFMFFNSLGFKLSIYMIIILTTKFPLQLGLQLCFLAMYFTYDTAVIATTPVGIRIFIIVTEAIIPALIPLT***
Disordered Region (DISOPRED)
****TAIKAFIFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELLLGHGTYSSGRLELIALHQQRQLDSRHDF******************ALLVVAALVATTSFQFGVNPPGGNAVAFALFMFFNSLGFKLSIYMIIILTTKFPLQLGLQLCFLAMYFTYDTAVIATTPVGIRIFIIVTEAIIPALIPLTARW
Disordered Region (DISEMBL)
MKKETAIKAFIFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELLLGHGTYSSGRLELIALHQQRQLDSRHDFVEYFKFKKGRDSPGETRSALLVVAALVATTSFQFGVNPPGGNAVAFALFMFFNSLGFKLSIYMIIILTTKFPLQLGLQLCFLAMYFTYDTAVIATTPVGIRIFIIVTEAIIPALIPLTARW
Disordered Region (DISPRO)
*KKETAIKAFIFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELLLGHGTYSSGRLELIALHQQRQLDSRHDFVEYFKFKKGRDSPGETRSALLVVAALVATTSFQFGVNPPGGNAVAFALFMFFNSLGFKLSIYMIIILTTKFPLQLGLQLCFLAMYFTYDTAVIATTPVGIRIFIIVTEAIIPALIPLTARW
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKKETAIKAFIFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELLLGHGTYSSGRLELIALHQQRQLDSRHDFVEYFKFKKGRDSPGETRSALLVVAALVATTSFQFGVNPPGGNAVAFALFMFFNSLGFKLSIYMIIILTTKFPLQLGLQLCFLAMYFTYDTAVIATTPVGIRIFIIVTEAIIPALIPLTARW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	328	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.451	0.250	0.331	4e-14
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.539	0.332	0.275	2e-12
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	yes	no	0.472	0.039	0.327	2e-10
Q01484	3957	Ankyrin-2 OS=Homo sapiens	yes	no	0.478	0.039	0.319	3e-10
Q7Z020	1296	Transient receptor potent	yes	no	0.393	0.099	0.323	1e-09
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.490	0.307	0.275	4e-09
B2RXR6	993	Serine/threonine-protein	yes	no	0.472	0.156	0.301	2e-08
A5PMU4	1280	Ankyrin repeat and steril	no	no	0.411	0.105	0.32	3e-08
Q6RI86	1125	Transient receptor potent	no	no	0.478	0.139	0.278	3e-08
Q8BLA8	1125	Transient receptor potent	no	no	0.469	0.136	0.277	4e-08

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 83/157 (52%), Gaps = 9/157 (5%)

Query: 25  LHVASAYGHVDFVKEII--NVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
           L  A+  GH+D VKE++  + R  +A + N+ G+ P+HIA+  GH  +V  LL  +  L 
Sbjct: 133 LFTAADKGHLDVVKELLKYSSRESIAKK-NRSGYDPLHIAAIQGHHAIVEVLLDHDATLS 191

Query: 83  HQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVL 142
              GP   TPL  AA++G   V++++LS     +E     +  ALHLA +    E I  L
Sbjct: 192 QTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAARQGHVEVIKAL 251

Query: 143 VNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELL 179
           ++     K  ++    D++G T LH+A  K Q  E++
Sbjct: 252 LS-----KDPQLARRIDKKGQTALHMAV-KGQSSEVV 282

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 12/189 (6%)

Query: 14  VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRE 73
           VK+++    N  HVA+  GH+  VKE++ + P+L    +    SP++ A+   H  +V  
Sbjct: 87  VKIRSKSDMNAFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNA 146

Query: 74  LLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKN 133
           +L V+            T LH A   G + ++  ++      +     +  TALH+A+K 
Sbjct: 147 MLDVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKG 206

Query: 134 NQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKK--QRKELLLGHGTYSSGRLE 191
              E +  ++          I N +D +GNT LH+ATRK   Q   LLL   T+++  +E
Sbjct: 207 RSLEVVEEILQ-----ADYTILNERDRKGNTALHIATRKARPQITSLLL---TFTA--IE 256

Query: 192 LIALHQQRQ 200
           + A++ Q++
Sbjct: 257 VNAINNQKE 265

Arabidopsis thaliana (taxid: 3702)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 16/171 (9%)

Query: 18  ALRKG-NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK 76
           A +KG  PLHVA+ YG +D  K ++  R   A    ++G +P+H+A+   +  V   LL 
Sbjct: 559 ATKKGFTPLHVAAKYGSLDVAKLLLQRRA-AADSAGKNGLTPLHVAAHYDNQKVALLLL- 616

Query: 77  VEQKLCHQQGPEKN--TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
             +K        KN  TPLH AA K ++ + S +L+   E    VT Q  T LHLA +  
Sbjct: 617 --EKGASPHATAKNGYTPLHIAAKKNQMQIASTLLNYGAE-TNTVTKQGVTPLHLASQEG 673

Query: 135 QFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATR--KKQRKELLLGHG 183
             + +T+L++  +G       +M  + G T LHLA +  K    ++L  HG
Sbjct: 674 HTDMVTLLLD--KGAN----IHMSTKSGLTSLHLAAQEDKVNVADILTKHG 718

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 12/169 (7%)

Query: 18  ALRKG-NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK 76
           A +KG  PLHVA+ YG +D  K ++  R   A    ++G +P+H+A+   +  V   LL+
Sbjct: 559 ATKKGFTPLHVAAKYGSLDVAKLLLQRRA-AADSAGKNGLTPLHVAAHYDNQKVALLLLE 617

Query: 77  VEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQF 136
            +    H       TPLH AA K ++ + S +L+   E    VT Q  T LHLA +    
Sbjct: 618 -KGASPHATAKNGYTPLHIAAKKNQMQIASTLLNYGAE-TNIVTKQGVTPLHLASQEGHT 675

Query: 137 EAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATR--KKQRKELLLGHG 183
           + +T+L++  +G       +M  + G T LHLA +  K    ++L  HG
Sbjct: 676 DMVTLLLD--KGAN----IHMSTKSGLTSLHLAAQEDKVNVADILTKHG 718

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q7Z020|TRPA1_DROME Transient receptor potential cation channel subfamily A member 1 OS=Drosophila melanogaster GN=TrpA1 PE=2 SV=3

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 4/133 (3%)

Query: 14  VKLKALRKGNPLHVASAYGHVDFVKEIINVRPD--LAHEVNQDGFSPMHIASSIGHTGVV 71
           + LK     +PLH A+ YG  + V+++++      + +E +  G +P+HI+S  GHT VV
Sbjct: 569 INLKNNNNESPLHFAARYGRYNTVRQLLDSEKGSFIINESDGAGMTPLHISSQQGHTRVV 628

Query: 72  RELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAI 131
           + LL     L H+    +N PL  AA+ G    +  + S     ++ V    +TALHLA 
Sbjct: 629 QLLLN-RGALLHRDHTGRN-PLQLAAMSGYTETIELLHSVHSHLLDQVDKDGNTALHLAT 686

Query: 132 KNNQFEAITVLVN 144
             N+  AI+VL++
Sbjct: 687 MENKPHAISVLMS 699

Essential for thermotaxis by sensing environmental temperature. Receptor-activated non-selective cation channel involved in detection of sensations such as temperature. Involved in heat nociception by being activated by warm temperature of about 24-29 degrees Celsius.

Drosophila melanogaster (taxid: 7227)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 6/167 (3%)

Query: 13  LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVR 72
           L   KA    +  H+A+  G++  +  +I   P+L+   +    + +H A+S GH  +V 
Sbjct: 83  LAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVC 142

Query: 73  ELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIK 132
            LL     L         T LH AA  G   ++ +++      +  V  +  TALH+A+K
Sbjct: 143 FLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVK 202

Query: 133 NNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELL 179
               E + VL+          + N  D +GNT LH+A R K R E++
Sbjct: 203 GQNTEIVDVLME-----ADGSLINSADNKGNTPLHIAVR-KNRAEIV 243

Arabidopsis thaliana (taxid: 3702)

>sp|B2RXR6|ANR44_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Mus musculus GN=Ankrd44 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 87/202 (43%), Gaps = 47/202 (23%)

Query: 17  KALRKGNPLHVASAYGHVDFVKEIINV---RPDLAHEVNQDGFSPMHIASSIGHTGVVRE 73
           K  R   PLH A+A GH  ++ E++ +     D   + NQ G++P+H A   G+   +  
Sbjct: 732 KDSRGRTPLHYAAARGHATWLNELLQIALSEEDCCLKDNQ-GYTPLHWACYNGNENCIEV 790

Query: 74  LLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSA-------C-------------- 112
           LL  EQK   +      TPLHCA I G     S +L A       C              
Sbjct: 791 LL--EQKCFRKFIGNPFTPLHCAIINGHESCASLLLGAIDPSIVSCRDDKGRTTLHAAAF 848

Query: 113 ---PECIEDVTIQHD-----------TALHLAIKNNQFEAITVLVNWIRGMKREEIFNMK 158
               EC++ + ++HD           TAL +A +N Q  A+ +LVN       +    +K
Sbjct: 849 GDHAECLQ-LLLRHDAQVNAVDNSGKTALMMAAENGQAGAVDILVN-----SAQADLTVK 902

Query: 159 DEQGNTVLHLATRKKQRKELLL 180
           D+  NT LHLA  K   K  LL
Sbjct: 903 DKDLNTPLHLAISKGHEKCALL 924

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Mus musculus (taxid: 10090)

>sp|A5PMU4|ANS1B_DANRE Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Danio rerio GN=anks1b PE=3 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 15/150 (10%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLA--HEVNQDGFSPMHIASSIGHTGVVRELLK--VEQ 79
           PLH+A+  G VD V+ +I+  P  +  +E N +  + +H A+  GH+ VVR LL+   + 
Sbjct: 94  PLHLAAWRGDVDIVQILIHHGPSHSRVNEQNLEKETALHCAAQYGHSEVVRVLLQELTDP 153

Query: 80  KLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAI 139
            + + +G    TPL  AA+ G++ V+  +L+A P  +   T +H T LHLA +N  +  +
Sbjct: 154 SMRNSRG---ETPLDLAALYGRLQVVRMLLTAHPNLMSCNTRKH-TPLHLAARNGHYATV 209

Query: 140 TVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
            VL      ++ +   N + E+G + LH A
Sbjct: 210 QVL------LEADMDVNTQTEKG-SALHEA 232

Danio rerio (taxid: 7955)

>sp|Q6RI86|TRPA1_RAT Transient receptor potential cation channel subfamily A member 1 OS=Rattus norvegicus GN=Trpa1 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 12/169 (7%)

Query: 14  VKLKALRKGNPLHVASAYGHVDFVKEIINVRPD--LAHEVNQDGFSPMHIASSIGHTGVV 71
           V  K+  K +PLH A++YG ++  + ++    D  L +E +  G +P+H+A+  GH  VV
Sbjct: 440 VHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVV 499

Query: 72  RELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAI 131
           + LLK              T LH A++ G    +  +L    +C + +  + +TALH A 
Sbjct: 500 QLLLKKGALFLSDHNGW--TALHHASMGGYTQTMKVILDTNLKCTDRLDEEGNTALHFAA 557

Query: 132 KNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELLL 180
           +    +A+ +L+++      + + N K     + LH+A   K RKE++L
Sbjct: 558 REGHAKAVAMLLSY----NADILLNKKQA---SFLHIALHNK-RKEVVL 598

Receptor-activated non-selective cation channel involved in detection of pain and possibly also in cold perception and inner ear function. Has a central role in the pain response to endogenous inflammatory mediators and to a diverse array of volatile irritants, such as mustard oil, garlic and acrolein, an irritant from tears gas and vehicule exhaust fumes. Acts also as a ionotropic cannabinoid receptor by being activated by delta(9)-tetrahydrocannabinol (THC), the psychoactive component of marijuana. Not involved in menthol sensation. May be a component for the mechanosensitive transduction channel of hair cells in inner ear, thereby participating in the perception of sounds. Probably operated by a phosphatidylinositol second messenger system.

Rattus norvegicus (taxid: 10116)

>sp|Q8BLA8|TRPA1_MOUSE Transient receptor potential cation channel subfamily A member 1 OS=Mus musculus GN=Trpa1 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 17  KALRKGNPLHVASAYGHVDFVKEIINVRPD--LAHEVNQDGFSPMHIASSIGHTGVVREL 74
           K+  K +PLH A++YG ++  + ++    D  L +E +  G +P+H+A+  GH  VV+ L
Sbjct: 443 KSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQLL 502

Query: 75  LKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
           LK              T LH A++ G    +  +L    +C + +  + +TALH A +  
Sbjct: 503 LKKGALFLSDHNGW--TALHHASMGGYTQTMKVILDTNLKCTDRLDEEGNTALHFAAREG 560

Query: 135 QFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELLL 180
             +A+ +L+++      + + N K     + LH+A   K RKE++L
Sbjct: 561 HAKAVAMLLSY----NADILLNKKQA---SFLHIALHNK-RKEVVL 598

Receptor-activated non-selective cation channel involved in detection of pain and possibly also in cold perception and inner ear function. Has a central role in the pain response to endogenous inflammatory mediators and to a diverse array of volatile irritants, such as mustard oil, garlic and acrolein, an irritant from tears gas and vehicule exhaust fumes. Acts also as a ionotropic cannabinoid receptor by being activated by delta(9)-tetrahydrocannabinol (THC), the psychoactive component of marijuana. Not involved in menthol sensation. May be a component for the mechanosensitive transduction channel of hair cells in inner ear, thereby participating in the perception of sounds. Probably operated by a phosphatidylinositol second messenger system.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
224114660	448	predicted protein [Populus trichocarpa]	0.963	0.705	0.437	1e-87
147791225	394	hypothetical protein VITISV_030400 [Viti	0.881	0.733	0.432	8e-78
359490025	450	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.926	0.675	0.384	5e-70
255539939	320	ankyrin repeat-containing protein, putat	0.524	0.537	0.606	5e-57
387169523	411	hypothetical protein 11M19.23, partial [	0.832	0.664	0.344	8e-56
15241393	442	ankyrin repeat-containing protein [Arabi	0.835	0.619	0.343	2e-54
387169570	435	hypothetical protein 34G24.15 [Capsella	0.929	0.701	0.324	3e-54
224134294	218	predicted protein [Populus trichocarpa]	0.503	0.756	0.581	4e-51
224114656	169	predicted protein [Populus trichocarpa]	0.439	0.852	0.576	6e-41
224136414	459	predicted protein [Populus trichocarpa]	0.506	0.361	0.470	3e-39

>gi|224114660|ref|XP_002332335.1| predicted protein [Populus trichocarpa] gi|222832582|gb|EEE71059.1| predicted protein [Populus trichocarpa]

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 176/402 (43%), Positives = 232/402 (57%), Gaps = 86/402 (21%)

Query: 12  FLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVV 71
           F++    L   NPL++A+A GHVDFVKEII ++P  A EVNQ+GFSPMHIA+  G   + 
Sbjct: 26  FILNNTQLSAENPLNIAAAMGHVDFVKEIIRLKPVFAIEVNQEGFSPMHIAADNGQVEIA 85

Query: 72  RELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAI 131
           +EL++V+ KLC  +G +K TP H AAI+G+  V+S MLS CP+CIED T + ++ALHLA+
Sbjct: 86  KELMEVDIKLCRLEGRQKMTPFHHAAIRGRAEVISLMLSGCPDCIEDETERRESALHLAV 145

Query: 132 KNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTYSSGR 189
           +NN+FEAI  LV+WIR M +E + NMKDEQGNTVLHLA+ KKQR+  E+ LG G+ S+G 
Sbjct: 146 RNNRFEAIKKLVDWIREMNKEYLLNMKDEQGNTVLHLASWKKQRRVIEIFLGSGSASTGS 205

Query: 190 LELIALHQ------------------------------QRQLDS---------------- 203
           LE+ A++                                R  DS                
Sbjct: 206 LEVNAINHTGITALDVILLFPSEAGDREIVEILRSAGAMRARDSVPSTVTNSQTSTDNPS 265

Query: 204 --------RHDFVEYFKFKKGRDSPGETRSALLVVAALVATTSFQFGVNPPGG------- 248
                   R + VEYFKFKK RDSP E R  LLV+A LVAT +FQ GV PPGG       
Sbjct: 266 TPERCWSNRDNLVEYFKFKKDRDSPSEARGTLLVIAVLVATATFQVGVGPPGGVWQDTSI 325

Query: 249 -----------------------NAVAFALFMFFNSLGFKLSIYMIIILTTKFPLQLGLQ 285
                                  N V F LF+FFNS+GF +S+YM+ +LT+KFPLQ  LQ
Sbjct: 326 PDQKNITSNNTAHFAGQSIMATTNTVGFMLFVFFNSVGFSMSLYMLYVLTSKFPLQFELQ 385

Query: 286 LCFLAMYFTYDTAVIATTPVGIRIFIIVTEAIIPALIPLTAR 327
           +C LAMY TY TA+    P  + +F+ +T  I+ + +   AR
Sbjct: 386 ICLLAMYCTYGTALSCIVPSNLYLFVQLTTTILSSTMSALAR 427

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147791225|emb|CAN70132.1| hypothetical protein VITISV_030400 [Vitis vinifera]

 Score =  296 bits (759), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 153/354 (43%), Positives = 210/354 (59%), Gaps = 65/354 (18%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
           NPLH++S  GHVDFVKE+I ++PD   E+NQDGFSP+H+A++ GH  VV ELLK + KLC
Sbjct: 38  NPLHISSISGHVDFVKELIRLKPDFIKELNQDGFSPIHMAAANGHQEVVMELLKFDWKLC 97

Query: 83  HQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVL 142
           H +G ++ TPLHCAA+KGKV V+  +LSAC ECIEDVT+Q + ALHLA+KN+Q+EA+ VL
Sbjct: 98  HLEGRDEKTPLHCAAMKGKVDVVRVILSACKECIEDVTVQKEXALHLAVKNSQYEAVRVL 157

Query: 143 VNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELLLGHGTYSSGRLELIALHQQRQLD 202
           V  +      EI                   Q  E LLG  T     +  + L     L 
Sbjct: 158 VEKMNEWXNAEI-----------------TWQVIEFLLGDATIPGSGVTEVNLMNNSGLT 200

Query: 203 S------------------RHDFVEYFKFKKGRDSPGETRSALLVVAALVATTSFQFGVN 244
           +                   ++ V YF+F +GRDSPGE RSALLV+A LVAT ++Q G++
Sbjct: 201 ALDVLLIFPSEAVETCPMQPNNLVNYFRFHRGRDSPGEARSALLVIAVLVATATYQVGLS 260

Query: 245 PPGG------------------------------NAVAFALFMFFNSLGFKLSIYMIIIL 274
           PPGG                                ++F +F+ FNS+GF +S+YMI IL
Sbjct: 261 PPGGVWQDNSGTNQSNSTATNKAHFAGQSIFSSLGIISFGIFVLFNSIGFSVSLYMISIL 320

Query: 275 TTKFPLQLGLQLCFLAMYFTYDTAVIATTPVGIRIFIIVTEAIIPALIPLTARW 328
           T KFP++  LQ+C LAM+FTY+TA+I  +P  ++IF+IV  +I+P  + L A+W
Sbjct: 321 TXKFPMRFELQICLLAMFFTYNTAIITISPDNLKIFLIVLTSILPLTVCLVAKW 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490025|ref|XP_003634016.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  271 bits (692), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 152/395 (38%), Positives = 214/395 (54%), Gaps = 91/395 (23%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
           NPLH++S  GHVDFVKE+I ++PD   E+NQDGFSP+H+A++ GH  VV ELLK + K C
Sbjct: 38  NPLHISSISGHVDFVKELIRLKPDFIKELNQDGFSPIHMAAANGHQEVVMELLKFDWKXC 97

Query: 83  HQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLA------------ 130
           H +G ++ TPLHCAA+KGKV+V+  +LSAC ECIEDVT+Q + ALHLA            
Sbjct: 98  HLEGRDEKTPLHCAAMKGKVNVVRVILSACKECIEDVTVQKEIALHLAVKNSQYEAVRVL 157

Query: 131 --------------IKNNQFEAITVLVNW--------------IRGMKREEIFNMKDEQG 162
                         +K+     I  L  W              I G    E+ N+ +  G
Sbjct: 158 VEKVREMRREDVLNMKDEHGNTILHLATWRKQRQAKFLLGDATIPGSGVTEV-NLMNNSG 216

Query: 163 NT-------------------VLHLATRKKQRKELLLGHGTYSSGRLELIALHQQRQLDS 203
            T                   +LH A  K+ +       GT +  RL      +   +  
Sbjct: 217 LTALDVLLIFPSEAGDREIKEILHSAGAKRAQDIAFPPFGTQNHARLNSTTTVETCPMQP 276

Query: 204 RHDFVEYFKFKKGRDSPGETRSALLVVAALVATTSFQFGVNPPGG--------------- 248
            ++ V YF+F +GRDSPGE RSALLV+A LVAT ++Q G++PPGG               
Sbjct: 277 -NNLVNYFRFHRGRDSPGEARSALLVIAVLVATATYQVGLSPPGGVWQDNSGTNQSNSTA 335

Query: 249 ---------------NAVAFALFMFFNSLGFKLSIYMIIILTTKFPLQLGLQLCFLAMYF 293
                            ++F +F+ FNS+GF +S+YMI ILT+KFP++  LQ+C LAM+F
Sbjct: 336 TNKAHFAGQSIFSSLGIISFGIFVLFNSIGFSVSLYMISILTSKFPMRFELQICLLAMFF 395

Query: 294 TYDTAVIATTPVGIRIFIIVTEAIIPALIPLTARW 328
           TY+TA+I  +P  ++IF+IV  +I+P  + L A+W
Sbjct: 396 TYNTAIITISPDNLKIFLIVLTSILPLTVCLVAKW 430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539939|ref|XP_002511034.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223550149|gb|EEF51636.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 105/173 (60%), Positives = 137/173 (79%), Gaps = 1/173 (0%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
           NPLH+AS  GHVDFVK+++ ++P+ A E+NQDG+SPMH+A++IGH  +VREL KV+ +LC
Sbjct: 38  NPLHIASIAGHVDFVKDLLRLKPEFAQELNQDGYSPMHMAATIGHVEIVRELAKVDSRLC 97

Query: 83  HQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVL 142
             +G +K TPLH AAIKG+  V S ML +CP+CIEDVT++ +TA+H A+KNNQF A+ VL
Sbjct: 98  RVRGKQKKTPLHLAAIKGRAEVTSVMLMSCPDCIEDVTVRGETAVHQAVKNNQFHAVNVL 157

Query: 143 VNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK-ELLLGHGTYSSGRLELIA 194
           V+WIRG  REE+ N+KDE GNTVLHLA  KKQR+ +LLLG  T  SG LE+ A
Sbjct: 158 VDWIRGTNREEMLNVKDELGNTVLHLAAWKKQRQAKLLLGAATIRSGILEVNA 210

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|387169523|gb|AFJ66184.1| hypothetical protein 11M19.23, partial [Arabidopsis halleri]

 Score =  223 bits (569), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 125/363 (34%), Positives = 190/363 (52%), Gaps = 90/363 (24%)

Query: 51  VNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLS 110
           +++DGFSP+H A++ G    VR  L VE+KLC  +  +  TPLH A ++GK+ V+ E+++
Sbjct: 12  LDKDGFSPLHAAAAAGQVETVRATLGVEKKLCRLKDRDGKTPLHVATMRGKIDVIREIVA 71

Query: 111 ACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLAT 170
           +C +C+ED T+Q  TALHLA+ + + EA+  ++  I    R ++ N KDEQGNT LH+AT
Sbjct: 72  SCVDCVEDETVQGQTALHLAVLHQEIEAVIAILELITETNRLDVLNKKDEQGNTALHIAT 131

Query: 171 RKKQRK--ELLLGHGTYSSGRLELIALH-------------------------------- 196
            +K R+  E+L+      S   E+ A++                                
Sbjct: 132 WRKNRQVIEVLVQAIPEESRSFEVNAMNKMGLSAMDLLVMFPSEAGDREIYEKLIEAGAQ 191

Query: 197 -------------------QQRQLDSRH--DFVEYFKFKKGRDSPGETRSALLVVAALVA 235
                              Q+R ++S+   + V+YF FKK RDSP E RSALLVVA+LVA
Sbjct: 192 RGRDIGTTNVERNTSTSTCQERAMESQSHKELVKYFTFKKHRDSPSEARSALLVVASLVA 251

Query: 236 TTSFQFGVNPPGG-----------------------------------NAVAFALFMFFN 260
           T +FQ  + PPGG                                   N VAF LF+FFN
Sbjct: 252 TATFQASLTPPGGTWQDSSIPTVSQNTTSVNTTNQQAHIAGQSIMGTFNGVAFTLFVFFN 311

Query: 261 SLGFKLSIYMIIILTTKFPLQLGLQLCFLAMYFTYDTAVIATTPVGIRIFIIVTEAIIPA 320
           ++GF +S+ M+ ILT  FPL+  LQ+C +AMYF+++T + +  P  ++I+ I+  +I+ A
Sbjct: 312 TIGFSVSLSMLNILTLGFPLRFQLQICMIAMYFSHNTTMASIAPDNVKIYCILITSILAA 371

Query: 321 LIP 323
             P
Sbjct: 372 TTP 374

Source: Arabidopsis halleri

Species: Arabidopsis halleri

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241393|ref|NP_199929.1| ankyrin repeat-containing protein [Arabidopsis thaliana] gi|8843852|dbj|BAA97378.1| unnamed protein product [Arabidopsis thaliana] gi|45825143|gb|AAS77479.1| At5g51160 [Arabidopsis thaliana] gi|51968476|dbj|BAD42930.1| putative protein [Arabidopsis thaliana] gi|62319991|dbj|BAD94109.1| putative protein [Arabidopsis thaliana] gi|332008662|gb|AED96045.1| ankyrin repeat-containing protein [Arabidopsis thaliana]

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 190/364 (52%), Gaps = 90/364 (24%)

Query: 50  EVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEML 109
           +++++GFSP+H A++ G    VR  L VE+KLC  +  +  TPLH A ++GK+ V+ E++
Sbjct: 42  DLDKNGFSPLHAAAAAGQVETVRATLGVEKKLCRLKDRDGKTPLHVATMRGKIDVIREIV 101

Query: 110 SACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
           ++C +C+ED T+Q  TALHLA+ + + EA+  +V  I    R ++ N KDEQGNT LHLA
Sbjct: 102 ASCVDCLEDETVQGQTALHLAVLHLEIEAVIAIVELITETNRFDVLNKKDEQGNTALHLA 161

Query: 170 TRKKQRK--ELLLGHGTYSSGRLELIALH------------------------------- 196
           T +K R+  E+L+      S   E+ A++                               
Sbjct: 162 TWRKNRQVIEVLVQAIPEESRSFEVNAMNKMGLSAMDLLVMFPSEAGDREIYEKLIEAGA 221

Query: 197 --------------------QQRQLDSRH--DFVEYFKFKKGRDSPGETRSALLVVAALV 234
                               Q+R + S+   + V+YF FKK RDSP E RSALLVVA+LV
Sbjct: 222 QRGRDIGTTNVERTTSTSTCQERTMKSQSHKELVKYFTFKKHRDSPSEARSALLVVASLV 281

Query: 235 ATTSFQFGVNPPGG-----------------------------------NAVAFALFMFF 259
           AT +FQ  + PPGG                                   N VAF LF+FF
Sbjct: 282 ATATFQASLTPPGGTWQDSSIPAVSQNTTNVNTTNQQAHTAGQSIMGTFNGVAFTLFVFF 341

Query: 260 NSLGFKLSIYMIIILTTKFPLQLGLQLCFLAMYFTYDTAVIATTPVGIRIFIIVTEAIIP 319
           N++GF +S+ M+ ILT  FPL+  LQ+C +AMYF+++T + +  P  ++++ I+  +I+ 
Sbjct: 342 NTIGFSVSLSMLNILTLGFPLRFQLQICMIAMYFSHNTTMASIAPDHVKLYCILITSILA 401

Query: 320 ALIP 323
           A  P
Sbjct: 402 ATTP 405

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|387169570|gb|AFJ66229.1| hypothetical protein 34G24.15 [Capsella rubella]

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 129/397 (32%), Positives = 202/397 (50%), Gaps = 92/397 (23%)

Query: 23  NPLHVASAYGHVDFV--KEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQK 80
           +PLH +      ++V   +I+  R     +++++GFSP+H A++ G    V+ +L +++K
Sbjct: 15  DPLHNSFNPRREEYVIGGKILRQRSGFVFDLDKEGFSPLHAAAAAGQVETVKAILGIDKK 74

Query: 81  LCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAIT 140
            C  +G +  TPLH A ++GK+ V+ E++S C +C+ED T+Q  TALHLA+ + +  A+ 
Sbjct: 75  FCRLKGKDGKTPLHLATMRGKIDVIRELVSNCVDCVEDETVQGQTALHLAVLHQETGAVM 134

Query: 141 VLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTYSSGRLELIALHQ- 197
            +V+ I    R ++   KDEQGNT LHLAT KK R+  E+L+      S   E+ A+++ 
Sbjct: 135 AIVDLITEKNRIDLLYKKDEQGNTALHLATWKKNRQVMEVLVQAIPEESRSFEVNAMNKM 194

Query: 198 -----------------------------QRQLD-----------------------SRH 205
                                        QR  D                       S  
Sbjct: 195 GLSALDLLVMFPSEAGDREIYEKLIEAGAQRGRDVGTTNVERTTSTSTCQETTMECGSHK 254

Query: 206 DFVEYFKFKKGRDSPGETRSALLVVAALVATTSFQFGVNPPGG----------------- 248
           + V+YF FKK RDSP E RSALLVVA+LVAT +FQ  + PPGG                 
Sbjct: 255 ELVKYFTFKKHRDSPSEARSALLVVASLVATATFQASLTPPGGTWQDSSIPAVSQNKTSA 314

Query: 249 ------------------NAVAFALFMFFNSLGFKLSIYMIIILTTKFPLQLGLQLCFLA 290
                             N +AF +F+FFN++GF +S+ M+ ILT  FPL+  LQ+C +A
Sbjct: 315 NATIQQAHIAGQSIMGTFNGIAFTMFVFFNTIGFSVSLSMLNILTLGFPLRFQLQICMMA 374

Query: 291 MYFTYDTAVIATTPVGIRIFIIVTEAIIPALIPLTAR 327
           MYF+++TA+ +  P  ++++ I+  +I+ A  P   R
Sbjct: 375 MYFSHNTAMTSIAPDQVKLYCILITSILAAATPSLMR 411

Source: Capsella rubella

Species: Capsella rubella

Genus: Capsella

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134294|ref|XP_002321784.1| predicted protein [Populus trichocarpa] gi|222868780|gb|EEF05911.1| predicted protein [Populus trichocarpa]

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 96/165 (58%), Positives = 127/165 (76%)

Query: 12  FLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVV 71
            ++ +  L   NPL++A+  GHVDFVKEII ++P  A EVNQ+GFSP HIA++ GH  +V
Sbjct: 26  LILNITLLSAENPLNIAADMGHVDFVKEIIKLKPVFAKEVNQEGFSPTHIAAANGHVEIV 85

Query: 72  RELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAI 131
           +EL+KV+ KLC  +G +K TPLH AAIKG+  V+S MLS CP+CIED T + + ALHLA+
Sbjct: 86  KELMKVDIKLCRLEGRQKMTPLHYAAIKGRAEVISAMLSDCPDCIEDETDRKENALHLAV 145

Query: 132 KNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK 176
           KNN+FEAI +L +WI+ M +E + NMKDEQGNTVLHLA+ KKQR+
Sbjct: 146 KNNRFEAIKILGDWIKDMNKEYLLNMKDEQGNTVLHLASWKKQRE 190

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114656|ref|XP_002332334.1| predicted protein [Populus trichocarpa] gi|222832581|gb|EEE71058.1| predicted protein [Populus trichocarpa]

 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 83/144 (57%), Positives = 108/144 (75%)

Query: 32  GHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNT 91
           GHVDFVKEII ++P L  EVNQ+GFSPMHIA+  GH  +V++L+KV+ KL   +G +K T
Sbjct: 2   GHVDFVKEIIRLKPVLTREVNQEGFSPMHIAADNGHVEIVKDLIKVDVKLGRLEGRQKMT 61

Query: 92  PLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKR 151
           P H AAI+G+  V+  MLS CP+CIED T + + ALHLA++NN+FEAI +LV+W R M +
Sbjct: 62  PFHHAAIRGRAEVIGLMLSGCPDCIEDETERRENALHLAVRNNRFEAIKMLVDWNREMNK 121

Query: 152 EEIFNMKDEQGNTVLHLATRKKQR 175
           E + NMK EQG TVLHLA  KK +
Sbjct: 122 EYLLNMKHEQGKTVLHLANWKKTK 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136414|ref|XP_002326854.1| predicted protein [Populus trichocarpa] gi|222835169|gb|EEE73604.1| predicted protein [Populus trichocarpa]

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/168 (47%), Positives = 118/168 (70%), Gaps = 2/168 (1%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
           NPLH++S  GH++  +E+   +P  A E+NQDGFSP+HIASS GH  +VRELL+V   +C
Sbjct: 38  NPLHLSSLAGHLEITREVACQKPAFARELNQDGFSPVHIASSNGHVELVRELLRVGYDIC 97

Query: 83  HQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVL 142
             +G +  TPLH AA+KG+V ++ E++ ACP+ +++VTI  +T LH+A+K+NQ EA+ VL
Sbjct: 98  LLKGKDGKTPLHLAAMKGRVDIVKELVCACPQSVKEVTICGETVLHVAVKSNQAEAVKVL 157

Query: 143 VNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTYSSG 188
           +  I+ +   EI N KD+ GNT++HLAT +KQ +   LL+G    + G
Sbjct: 158 LEEIKKLDMMEIVNWKDKDGNTIMHLATLRKQHETIRLLIGREAIAYG 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
TAIR|locus:2176252	442	AT5G51160 "AT5G51160" [Arabido	0.451	0.334	0.406	6.7e-45
TAIR|locus:2132711	445	AT4G10720 "AT4G10720" [Arabido	0.466	0.343	0.368	7.1e-29
TAIR|locus:2012557	436	AT1G14500 "AT1G14500" [Arabido	0.478	0.360	0.385	1.5e-26
TAIR|locus:2172099	431	AT5G54620 [Arabidopsis thalian	0.475	0.361	0.379	1.9e-26
TAIR|locus:2172089	426	ANK "ankyrin" [Arabidopsis tha	0.466	0.359	0.386	2.5e-26
TAIR|locus:2180882	457	AT5G15500 [Arabidopsis thalian	0.478	0.343	0.358	3.4e-26
TAIR|locus:2012532	441	AT1G14480 "AT1G14480" [Arabido	0.478	0.356	0.359	3.7e-26
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.472	0.289	0.301	1.4e-15
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.503	0.303	0.319	1.8e-14
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.451	0.250	0.331	9e-14

TAIR|locus:2176252 AT5G51160 "AT5G51160" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
 Identities = 61/150 (40%), Positives = 98/150 (65%)

Query:    50 EVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEML 109
             +++++GFSP+H A++ G    VR  L VE+KLC  +  +  TPLH A ++GK+ V+ E++
Sbjct:    42 DLDKNGFSPLHAAAAAGQVETVRATLGVEKKLCRLKDRDGKTPLHVATMRGKIDVIREIV 101

Query:   110 SACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
             ++C +C+ED T+Q  TALHLA+ + + EA+  +V  I    R ++ N KDEQGNT LHLA
Sbjct:   102 ASCVDCLEDETVQGQTALHLAVLHLEIEAVIAIVELITETNRFDVLNKKDEQGNTALHLA 161

Query:   170 TRKKQRK--ELLLGHGTYSSGRLELIALHQ 197
             T +K R+  E+L+      S   E+ A+++
Sbjct:   162 TWRKNRQVIEVLVQAIPEESRSFEVNAMNK 191

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2132711 AT4G10720 "AT4G10720" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 59/160 (36%), Positives = 99/160 (61%)

Query:    24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
             PLH+ASA G++ F  E++N++P  A ++N  G SP+H+A   G T +V  LLKV+  L  
Sbjct:    40 PLHIASASGNLSFAMELMNLKPSFARKLNTYGLSPLHLAIEEGQTRLVLSLLKVDSDLVR 99

Query:    84 QQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLV 143
              +G E  TP H    +G+  +++E L ACP CI+D  +  +TALH+A+ N+++E + VL+
Sbjct:   100 LRGREGMTPFHQVVRRGETDLMTEFLLACPGCIKDANVNGETALHIAVSNDRYEELEVLL 159

Query:   144 NWIRGMKREE-------IFNMKDEQGNTVLHLATRKKQRK 176
              W++ +++ +         N +D+ GNT LH+A  + + K
Sbjct:   160 GWVQRLRQTDAESLEMQFLNKRDQDGNTALHIAAYQNRFK 199

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012557 AT1G14500 "AT1G14500" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 64/166 (38%), Positives = 98/166 (59%)

Query:    24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
             PLHVA+A  ++ F  E++N++P  A ++N  G+SP+H+A    H   +  LL  +  L  
Sbjct:    40 PLHVAAASDNIPFAMEMLNLKPSFARKLNTSGYSPLHLAVEKDHREFITWLLWRDPGLVR 99

Query:    84 QQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLV 143
              +G E  TP H  AI+G V++++E L  CP CI+DV++    ALHLA+ N++FE + VL 
Sbjct:   100 VKGREGITPFHLLAIRGDVNLVAECLKYCPVCIQDVSVNGHNALHLAVMNDRFEILQVLT 159

Query:   144 NWIRGMKREE-------IFNMKDEQGNTVLHLATRKK--QRKELLL 180
              W++ M +++         N KD   NT LHLA  K+  Q  +LLL
Sbjct:   160 GWLQRMSQKDSASTESDFLNRKDLAHNTPLHLAAYKEDHQAVKLLL 205

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172099 AT5G54620 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 63/166 (37%), Positives = 94/166 (56%)

Query:    24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
             PLH AS+ G  D   E++ ++P  A ++N DG SP+H+A       +  EL+K+   L  
Sbjct:    40 PLHEASSTGKTDLAMELMVLKPTFAKKLNSDGVSPLHLAVENHQVQLALELVKINPDLVL 99

Query:    84 QQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLV 143
               G +  TPLH    KG  ++L+E L ACPE I+D  +  +TALH+A+ N+++E + VL 
Sbjct:   100 VAGRKGMTPLHLVVKKGDANLLTEFLLACPESIKDTNVNGETALHIAVMNDRYEELKVLT 159

Query:   144 NWIRGMKREE-------IFNMKDEQGNTVLHLATRK---KQRKELL 179
              WI  + + +       + N +D  GNT+LHLA  K   K  KELL
Sbjct:   160 GWIHRLHKSDAASTEIHVLNKRDRDGNTILHLAAYKNNHKAFKELL 205

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172089 ANK "ankyrin" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 61/158 (38%), Positives = 95/158 (60%)

Query:    24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
             PLH AS+ G +D   E++ ++P  A ++N+ G SP+H+A       +  EL+KV+  L  
Sbjct:    40 PLHEASSAGKLDLAMELMILKPSFAKKLNEYGLSPLHLAVENDQVELALELVKVDPSLVR 99

Query:    84 QQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLV 143
              +G    TPLH  A KG V +L++ L ACPE I+DV +  +T LH+ I N+++E + VL 
Sbjct:   100 IRGRGGMTPLHLVAKKGDVDLLTDFLLACPESIKDVNVNGETILHITIMNDKYEQLKVLT 159

Query:   144 NWIRGMK-REEIF----NMKDEQGNTVLHLATRKKQRK 176
              W++ M+  +++F    N +D  GNTVLHLA  +   K
Sbjct:   160 GWMQKMRDSDDVFIDVLNRRDRGGNTVLHLAAYENNDK 197

GO:0005886 "plasma membrane" evidence=ISM

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0045087 "innate immune response" evidence=IMP

TAIR|locus:2180882 AT5G15500 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 3.4e-26, Sum P(2) = 3.4e-26
 Identities = 61/170 (35%), Positives = 99/170 (58%)

Query:    24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
             PLHVA+  G  +F  E++N++P  A ++N DG +P+H+A   GH  +V E++KV+  L  
Sbjct:    41 PLHVAAVNGKTEFAMEMMNLKPSFARKLNADGLTPLHLAVEHGHFWLVLEVVKVDPSLVR 100

Query:    84 QQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKN-NQFEAITVL 142
              +G    TPL  A  + K+ ++SE    CPE I D  +  + ALH+A+ N +Q E ++VL
Sbjct:   101 IKGRHGMTPLLVAVSRKKIDLMSEFFLGCPESIVDANVNGENALHIAVNNYDQREGLSVL 160

Query:   143 ---VNWIRGMKREE-------IFNMKDEQGNTVLHLATRK--KQRKELLL 180
                + WI  + +++       + N +D+ GNT LHLA  +  +Q  +LLL
Sbjct:   161 KVLMGWILRLCQKDAEWIETRVINRRDKDGNTPLHLAAYEINRQAMKLLL 210

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012532 AT1G14480 "AT1G14480" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.7e-26, P = 3.7e-26
 Identities = 59/164 (35%), Positives = 94/164 (57%)

Query:    24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
             PLHVA+ +G+++F  E++N++P  A ++N  G+SP+H+A     +  V  +L  +  L  
Sbjct:    40 PLHVAAVFGNIEFAMEMLNLKPSFARKLNTSGYSPLHLAVEKEQSDFVSHMLWHDGGLSR 99

Query:    84 QQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLV 143
              +G    TP H   I+G   +++E L   PECIEDV +    ALHLA+ N++FE + VL 
Sbjct:   100 VKGRNGVTPFHLLVIRGDDDLVAECLITSPECIEDVNVDRQNALHLAVMNDRFEVLQVLT 159

Query:   144 NWIRGMKREE-------IFNMKDEQGNTVLHLATRKKQRKELLL 180
              WI+ M +++       + N +D   NT LHLA  K  ++ L L
Sbjct:   160 GWIQRMSQKDAYYIENRVLNKRDFDFNTALHLAAYKNDQQALKL 203

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
 Identities = 53/176 (30%), Positives = 87/176 (49%)

Query:    12 FLVKLKALRK---GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHT 68
             FL KL+   +   G  LH+A   G+ + VK+I+ + P L    N    +P+H+A+ +GHT
Sbjct:    15 FLKKLEEQDESFGGTFLHLAVKLGNEELVKKIVEIHPSLVSSTNTKSDTPLHLAARLGHT 74

Query:    69 GVVRELLK-----VEQ---------KLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPE 114
              ++  +L+     +E          KL      +  TPLHCA + G V  L+  ++  P 
Sbjct:    75 SILLLMLESTAESIESLEETVPNDLKLAEMVNKDGFTPLHCAVMNGSVETLTAFINKAPL 134

Query:   115 CIEDVTIQ-HDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
               + VT+Q  +T  HLA ++ + EA   +        R  ++ + D +GNTVLH A
Sbjct:   135 SFDSVTLQTSETVFHLAARHKKMEAFIFMAK--NANLRRLLYEL-DGEGNTVLHAA 187

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
 Identities = 55/172 (31%), Positives = 87/172 (50%)

Query:    13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVR 72
             LV++KA    +  H+A+  G +D +K +     +LA  V+    + +H A++ GHT VV 
Sbjct:    93 LVEIKARNGFDAFHIAAKQGDLDVLKVLAEAHSELAMTVDLSNTTALHTAATQGHTEVVN 152

Query:    73 ELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIK 132
              LL++   L         T LH A+  G V V+  +L++ P     +  +  TALH+A+K
Sbjct:   153 FLLELGSSLAGIAKSNGKTALHSASRNGHVKVIKALLASEPAIAIRMDKKGQTALHMAVK 212

Query:   133 NNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK--KQRKELLLGH 182
                 E +  L+       R  I N+ D +GNT LH+A RK   Q  +LLL +
Sbjct:   213 GTNVEVVEELIK----ADRSSI-NIADTKGNTALHIAARKGRSQIVKLLLAN 259

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 9.0e-14, P = 9.0e-14
 Identities = 52/157 (33%), Positives = 82/157 (52%)

Query:    25 LHVASAYGHVDFVKEIINV--RPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
             L  A+  GH+D VKE++    R  +A + N+ G+ P+HIA+  GH  +V  LL  +  L 
Sbjct:   133 LFTAADKGHLDVVKELLKYSSRESIAKK-NRSGYDPLHIAAIQGHHAIVEVLLDHDATLS 191

Query:    83 HQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVL 142
                GP   TPL  AA++G   V++++LS     +E     +  ALHLA +    E I  L
Sbjct:   192 QTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAARQGHVEVIKAL 251

Query:   143 VNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELL 179
             ++     K  ++    D++G T LH+A  K Q  E++
Sbjct:   252 LS-----KDPQLARRIDKKGQTALHMAV-KGQSSEVV 282

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	328
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-20
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-12
pfam13962	114	pfam13962, PGG, Domain of unknown function	2e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.001
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.001
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 85.1 bits (211), Expect = 2e-20
 Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
            PLH+A++ GH++ VK ++    D+ +  + DG +P+H+A+  GH  +V+ LL+ +    
Sbjct: 9   TPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLE-KGADV 66

Query: 83  HQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVL 142
           + +  + NTPLH AA  G + V+ ++L      +        T LHLA KN   E + +L
Sbjct: 67  NARDKDGNTPLHLAARNGNLDVV-KLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

Query: 143 V 143
           +
Sbjct: 126 L 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 84.0 bits (208), Expect = 4e-20
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 10/133 (7%)

Query: 50  EVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEML 109
             ++DG +P+H+A+S GH  VV+ LL+      + +  +  TPLH AA  G + ++  +L
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLE-NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 110 SACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
                 +       +T LHLA +N   + + +L+      K     N +D+ G T LHLA
Sbjct: 61  EKGA-DVNARDKDGNTPLHLAARNGNLDVVKLLL------KHGADVNARDKDGRTPLHLA 113

Query: 170 TRKKQRK--ELLL 180
            +    +  +LLL
Sbjct: 114 AKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 62.7 bits (153), Expect = 1e-12
 Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 25  LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQ 84
           LH+A+  G+++ VK ++    D+      D  + +H+A+  G+  +V+ LL+    +  +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL---GDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 85  QGPEKNTPLHCAAIKGKVHVLSEMLSA 111
              + NT LH AA  G + ++  +L  
Sbjct: 58  DK-DGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 60.3 bits (147), Expect = 7e-12
 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 60  HIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDV 119
           H+A+  G+  +V+ LL+    +      + +T LH AA  G + ++  +L    + +   
Sbjct: 2   HLAAKNGNLELVKLLLEKGADV---NLGDTDTALHLAARNGNLEIVKLLLEHGAD-VNAK 57

Query: 120 TIQHDTALHLAIKNNQFEAITVLVN 144
               +TALHLA +N   E + +L+ 
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 59.8 bits (146), Expect = 2e-11
 Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 17/90 (18%)

Query: 222 ETRSALLVVAALVATTSFQFGVNPPGG-----------------NAVAFALFMFFNSLGF 264
           +TR++LLVVA L+AT +F  G  PPGG                     F  F   N++ F
Sbjct: 6   KTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVSNTIAF 65

Query: 265 KLSIYMIIILTTKFPLQLGLQLCFLAMYFT 294
             S+  +I+L    P         LA+   
Sbjct: 66  VASLVAVILLLYIVPSFSRRLPRLLALLTL 95

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 11/93 (11%)

Query: 93  LHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKRE 152
           LH AA  G + ++  +L    +     T   DTALHLA +N   E + +L+      +  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLL------EHG 51

Query: 153 EIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
              N KD+ GNT LHLA R    +  +LLL HG
Sbjct: 52  ADVNAKDKDGNTALHLAARNGNLEIVKLLLEHG 84

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 56.0 bits (134), Expect = 4e-09
 Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 18/167 (10%)

Query: 19  LRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTG-----VVRE 73
           L    PLH A++ G    VK ++    D+    + DG +P+H+A+  G+       V + 
Sbjct: 71  LDGRLPLHSAASKGDDKIVKLLLASGADVN-AKDADGDTPLHLAALNGNPPEGNIEVAKL 129

Query: 74  LLKVEQKLC--HQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAI 131
           LL+    L   + +  + NTPLH AA+ G   ++  +L A  +          TAL  A 
Sbjct: 130 LLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD-PNSRNSYGVTALDPAA 188

Query: 132 KNNQFEAITVLVN---------WIRGMKREEIFNMKDEQGNTVLHLA 169
           KN + E + +L++         +          + ++    T L +A
Sbjct: 189 KNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRE 73
            +        LH+A+  G+++ VK ++    D+ +  ++DG + +H+A+  G+  +V+ 
Sbjct: 21 ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADV-NAKDKDGNTALHLAARNGNLEIVKL 79

Query: 74 LLK 76
          LL+
Sbjct: 80 LLE 82

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 7/146 (4%)

Query: 44  RPDLAHEVNQDGFSPMH--IASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGK 101
              L      D    ++  +A     +     L  +  +    +  +   PLH AA KG 
Sbjct: 26  LLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGD 85

Query: 102 VHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLV--NWIRGMKREEIFNMKD 159
             ++  +L++  + +       DT LHLA  N       + V    +      ++ N++D
Sbjct: 86  DKIVKLLLASGAD-VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD 144

Query: 160 EQGNTVLHLATRKKQRK--ELLLGHG 183
           E GNT LH A         ELLL  G
Sbjct: 145 EDGNTPLHWAALNGDADIVELLLEAG 170

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 23 NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELL 75
            LH A+  G ++ VK ++    D+ +  ++DG + +HIA+  G+  V++ LL
Sbjct: 3  TALHKAAISGRLELVKYLLEKGVDI-NRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 90  NTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLV 143
            T LH AAI G++ ++  +L      I       +TALH+A +N   E + +L+
Sbjct: 2   RTALHKAAISGRLELVKYLLEK-GVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 12/158 (7%)

Query: 28  ASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGP 87
           A  +G +D  + ++++  +   E+  DG SP+ +A     +  ++ L+K    +   + P
Sbjct: 9   AILFGELDIARRLLDIGINPNFEI-YDGISPIKLAMKFRDSEAIKLLMK-HGAIPDVKYP 66

Query: 88  EKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH-DTALHLAIKNNQFEAITVLVNWI 146
           +  + LH A  +G V    E L    +  +DV  +   T LHLA    + + + +L+   
Sbjct: 67  DIESELHDAVEEGDV-KAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLI--- 122

Query: 147 RGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGH 182
               R    ++ +    + LHLA      K  ELL+ H
Sbjct: 123 ---ARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH 157

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 23 NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIA 62
           PLH+A+ YG ++ V+ ++    DL +  + DG + + +A
Sbjct: 18 TPLHLAAKYGALELVQWLLKPGVDL-NLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 40/169 (23%), Positives = 91/169 (53%), Gaps = 12/169 (7%)

Query: 14  VKLKALRKGNPLHVASAYGH-VDFVKEIINVRPDLAHEVNQDGFSPMHIASSIG-HTGVV 71
           V  K ++   PL++ +  G+  + ++ +I +  D+ +  ++   +P+H AS++  +  +V
Sbjct: 300 VNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADV-NAADRLYITPLHQASTLDRNKDIV 358

Query: 72  RELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAI 131
             LL++   +  +   +K TP+H AA++  V +++ +L    + IE ++ +  TALH A+
Sbjct: 359 ITLLELGANVNARDYCDK-TPIHYAAVRNNVVIINTLLDYGAD-IEALSQKIGTALHFAL 416

Query: 132 -KNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELL 179
              N + ++  L++  RG       N K++  +T LH A +K  + +++
Sbjct: 417 CGTNPYMSVKTLID--RGAN----VNSKNKDLSTPLHYACKKNCKLDVI 459

Length = 682

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 74  LLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLA 130
           LL+      +      NTPLH AA  G + ++ + L      +        TAL LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELV-QWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 108 MLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLH 167
           +L   P  +       +T LHLA K    E +  L+            N++D  G T L 
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLK------PGVDLNLRDSDGLTALD 54

Query: 168 LA 169
           LA
Sbjct: 55  LA 56

Length = 56

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 15/107 (14%)

Query: 88  EKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTA---LHLAIKNNQFEAITVLVN 144
           E  T LH A  KG +  +  +     E   DV I+ D     +H+AIK+N F+ I +L+ 
Sbjct: 123 ELKTFLHYAIKKGDLESIKMLF----EYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLL- 177

Query: 145 WIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTYSSGR 189
                ++    N+KD  G + LH A         +LL+ HG +   +
Sbjct: 178 -----EKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNK 219

Length = 434

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	328
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	99.98
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.98
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02791	284	ankyrin-like protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.96
PHA02875	413	ankyrin repeat protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA02875	413	ankyrin repeat protein; Provisional	99.96
PHA02946	446	ankyin-like protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.95
PHA03100	480	ankyrin repeat protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.95
PHA03100	480	ankyrin repeat protein; Provisional	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.94
PHA02989	494	ankyrin repeat protein; Provisional	99.94
PHA02946	446	ankyin-like protein; Provisional	99.94
PHA03095	471	ankyrin-like protein; Provisional	99.94
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.94
PHA02876	682	ankyrin repeat protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.94
PHA03095	471	ankyrin-like protein; Provisional	99.93
PHA02989	494	ankyrin repeat protein; Provisional	99.93
KOG0508	615	consensus Ankyrin repeat protein [General function	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
PHA02917	661	ankyrin-like protein; Provisional	99.93
KOG0508	615	consensus Ankyrin repeat protein [General function	99.93
KOG0510	929	consensus Ankyrin repeat protein [General function	99.93
PHA02876	682	ankyrin repeat protein; Provisional	99.92
PHA02741	169	hypothetical protein; Provisional	99.92
PHA02743	166	Viral ankyrin protein; Provisional	99.91
KOG0514	452	consensus Ankyrin repeat protein [General function	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.89
PHA02884	300	ankyrin repeat protein; Provisional	99.89
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.89
PHA02795	437	ankyrin-like protein; Provisional	99.89
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.88
PHA02741	169	hypothetical protein; Provisional	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.88
PHA02730	672	ankyrin-like protein; Provisional	99.87
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.87
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.87
PHA02917	661	ankyrin-like protein; Provisional	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.86
PHA02730	672	ankyrin-like protein; Provisional	99.86
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.85
PHA02792	631	ankyrin-like protein; Provisional	99.84
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.84
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.84
PF13962	113	PGG: Domain of unknown function	99.84
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.83
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.83
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.82
PHA02884	300	ankyrin repeat protein; Provisional	99.82
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.82
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.8
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.8
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.79
KOG0514	452	consensus Ankyrin repeat protein [General function	99.77
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.77
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.76
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.75
PHA02792	631	ankyrin-like protein; Provisional	99.75
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.66
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.64
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.63
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.61
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.58
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.54
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.53
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.53
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.52
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.51
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.5
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.5
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.49
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.47
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.45
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.43
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.35
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.96
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.94
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.92
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.9
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.9
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.89
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.82
PF13606	30	Ank_3: Ankyrin repeat	98.8
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.79
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.75
KOG0522	560	consensus Ankyrin repeat protein [General function	98.69
PF13606	30	Ank_3: Ankyrin repeat	98.62
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.56
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.54
KOG0522	560	consensus Ankyrin repeat protein [General function	98.52
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.4
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.37
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.26
KOG0511	516	consensus Ankyrin repeat protein [General function	98.21
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.21
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.21
KOG2384	223	consensus Major histocompatibility complex protein	98.2
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.2
KOG2384	223	consensus Major histocompatibility complex protein	98.06
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.03
KOG0511	516	consensus Ankyrin repeat protein [General function	97.78
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.1
KOG2505	591	consensus Ankyrin repeat protein [General function	96.91
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.86
KOG2505	591	consensus Ankyrin repeat protein [General function	95.99
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.04
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.33
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	91.32
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	89.03
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.46
COG4298	95	Uncharacterized protein conserved in bacteria [Fun	84.71

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-38  Score=245.08  Aligned_cols=173  Identities=27%  Similarity=0.345  Sum_probs=156.9

Q ss_pred             hhhHHHHHHHhhccC-CCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHc-Ccccc
Q 046832            5 TAIKAFIFLVKLKAL-RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKV-EQKLC   82 (328)
Q Consensus         5 ~~~~~~~~~~~~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~-~~~~~   82 (328)
                      -+++..++.++.+++ +|+||||+||..|+.+++++|+++-.-..+.+|..||||||.||+.|+.++|+.|+.+ |+++ 
T Consensus        21 el~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~adv-   99 (226)
T KOG4412|consen   21 ELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADV-   99 (226)
T ss_pred             HHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCc-
Confidence            344555667777777 9999999999999999999999754444577899999999999999999999999998 8888 


Q ss_pred             ccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCC
Q 046832           83 HQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQG  162 (328)
Q Consensus        83 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G  162 (328)
                      +..++.|.||||+|+.+|+.|+.++|+++++. ++.+|..|.||||-|+.-|..+++++|+.      .++.+|.+|+.|
T Consensus       100 na~tn~G~T~LHyAagK~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAavGklkvie~Li~------~~a~~n~qDk~G  172 (226)
T KOG4412|consen  100 NATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAAVGKLKVIEYLIS------QGAPLNTQDKYG  172 (226)
T ss_pred             ceecCCCcceehhhhcCChhhHHHHHHhcCCC-CcccccccCchhHHHHhccchhhHHHHHh------cCCCCCcccccC
Confidence            99999999999999999999999999999976 99999999999999999999999999998      678899999999


Q ss_pred             CchhhHHhhccchh--HHhhcCCCC
Q 046832          163 NTVLHLATRKKQRK--ELLLGHGTY  185 (328)
Q Consensus       163 ~T~Lh~A~~~~~~~--~~Ll~~ga~  185 (328)
                      +||||+|.-.++.+  .+|+++|++
T Consensus       173 ~TpL~~al~e~~~d~a~lLV~~gAd  197 (226)
T KOG4412|consen  173 FTPLHHALAEGHPDVAVLLVRAGAD  197 (226)
T ss_pred             ccHHHHHHhccCchHHHHHHHhccc
Confidence            99999997777777  899999983

>PHA02791 ankyrin-like protein; Provisional

Probab=99.98  E-value=1.9e-31  Score=233.04  Aligned_cols=154  Identities=20%  Similarity=0.235  Sum_probs=89.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCC-CHHHHHHHc
Q 046832           21 KGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-TPLHCAAIK   99 (328)
Q Consensus        21 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~-tpLh~Aa~~   99 (328)
                      |+||||+|+..|+.++++.|++.|.++ +.+|.+|+||||+|+..|+.+++++|+++|+++ +.++..|. ||||+|+..
T Consensus        61 ~~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~  138 (284)
T PHA02791         61 NEFPLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVML  138 (284)
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHc
Confidence            445555555555555555555555444 445555555555555555555555555555555 44444442 555555555


Q ss_pred             CcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCch-hhHHhhccchh--
Q 046832          100 GKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTV-LHLATRKKQRK--  176 (328)
Q Consensus       100 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~-Lh~A~~~~~~~--  176 (328)
                      |+.+++++|++++++..+.  ..|+||||+|+++|+.+++++|++      .|+++|.+|..|.|| ||+|+..++.+  
T Consensus       139 g~~eivk~LL~~~~~~~d~--~~g~TpLh~Aa~~g~~eiv~lLL~------~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v  210 (284)
T PHA02791        139 NDVSIVSYFLSEIPSTFDL--AILLSCIHITIKNGHVDMMILLLD------YMTSTNTNNSLLFIPDIKLAIDNKDLEML  210 (284)
T ss_pred             CCHHHHHHHHhcCCccccc--ccCccHHHHHHHcCCHHHHHHHHH------CCCCCCcccCCCCChHHHHHHHcCCHHHH
Confidence            5555555555554431110  235666666666666666666665      456667777777765 77777777777  


Q ss_pred             HHhhcCCC
Q 046832          177 ELLLGHGT  184 (328)
Q Consensus       177 ~~Ll~~ga  184 (328)
                      ++|+++|+
T Consensus       211 ~lLl~~Ga  218 (284)
T PHA02791        211 QALFKYDI  218 (284)
T ss_pred             HHHHHCCC
Confidence            77777777

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=1.5e-32  Score=213.37  Aligned_cols=174  Identities=27%  Similarity=0.336  Sum_probs=154.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCcccccC-CCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHH
Q 046832           20 RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVN-QDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAI   98 (328)
Q Consensus        20 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~   98 (328)
                      .+.++.+.+++.....-++.+++..+.-.+.++ .+|+||||+||+.|+.+++++|++...-..+.+|..|+||||+|+.
T Consensus         2 e~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s   81 (226)
T KOG4412|consen    2 EYASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAAS   81 (226)
T ss_pred             CccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhh
Confidence            467888999999999999999999884335554 5999999999999999999999965444448889999999999999


Q ss_pred             cCcHHHHHHHHHh-CCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh-
Q 046832           99 KGKVHVLSEMLSA-CPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK-  176 (328)
Q Consensus        99 ~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~-  176 (328)
                      .|+.|+|+.|+.+ +++ ++..++.|.|+||+|+..|+.|++++|++      .|+.++.+|..|.||||.|+..|+.+ 
T Consensus        82 ~g~~evVk~Ll~r~~ad-vna~tn~G~T~LHyAagK~r~eIaqlLle------~ga~i~~kD~~~qtplHRAAavGklkv  154 (226)
T KOG4412|consen   82 NGNDEVVKELLNRSGAD-VNATTNGGQTCLHYAAGKGRLEIAQLLLE------KGALIRIKDKQGQTPLHRAAAVGKLKV  154 (226)
T ss_pred             cCcHHHHHHHhcCCCCC-cceecCCCcceehhhhcCChhhHHHHHHh------cCCCCcccccccCchhHHHHhccchhh
Confidence            9999999999999 665 99999999999999999999999999998      68889999999999999999999999 


Q ss_pred             -HHhhcCCCCCCchhhHHHhhhhcccCcccc
Q 046832          177 -ELLLGHGTYSSGRLELIALHQQRQLDSRHD  206 (328)
Q Consensus       177 -~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~  206 (328)
                       ++|++.|+      .+|+.+.+++++.+..
T Consensus       155 ie~Li~~~a------~~n~qDk~G~TpL~~a  179 (226)
T KOG4412|consen  155 IEYLISQGA------PLNTQDKYGFTPLHHA  179 (226)
T ss_pred             HHHHHhcCC------CCCcccccCccHHHHH
Confidence             99999998      6777788888775544

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=8.8e-31  Score=239.26  Aligned_cols=167  Identities=25%  Similarity=0.221  Sum_probs=150.6

Q ss_pred             HHHHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccC-CCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCC
Q 046832           11 IFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVN-QDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEK   89 (328)
Q Consensus        11 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g   89 (328)
                      ...++..|.+|-|+||+||.+++.+++++|+++++++ |..+ .-|.||||+|+++|+..+|+.|+++|+++ ..+|.+|
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdp-t~~D~~G  145 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAARNGHISVVDLLLQHGADP-TLKDKQG  145 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCC-ceecCCC
Confidence            4456678999999999999999999999999999999 5555 78999999999999999999999999999 9999999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCcccccccccc-CCCCchhhH
Q 046832           90 NTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKD-EQGNTVLHL  168 (328)
Q Consensus        90 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d-~~G~T~Lh~  168 (328)
                      .+|+|.|++.|+.-+|-+++.++.+ ++.+|.+|+||||+|+.+|+...++.|++      -++.++..| ++|+||||+
T Consensus       146 ~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~grTpLmwAaykg~~~~v~~LL~------f~a~~~~~d~~~g~TpLHw  218 (600)
T KOG0509|consen  146 LTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAYKGFALFVRRLLK------FGASLLLTDDNHGNTPLHW  218 (600)
T ss_pred             CcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCCCHHHHHHHhcccHHHHHHHH------hcccccccccccCCchHHH
Confidence            9999999999999999999999976 99999999999999999999887888887      566677777 999999999


Q ss_pred             Hhhccchh--HHhhcCCCCCC
Q 046832          169 ATRKKQRK--ELLLGHGTYSS  187 (328)
Q Consensus       169 A~~~~~~~--~~Ll~~ga~~~  187 (328)
                      |+..|+..  + |+..|+.+.
T Consensus       219 a~~~gN~~~v~-Ll~~g~~~~  238 (600)
T KOG0509|consen  219 AVVGGNLTAVK-LLLEGGADL  238 (600)
T ss_pred             HHhcCCcceEe-hhhhcCCcc
Confidence            99999999  8 555554333

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.1e-29  Score=221.92  Aligned_cols=160  Identities=18%  Similarity=0.119  Sum_probs=142.7

Q ss_pred             hhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHH
Q 046832           15 KLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLH   94 (328)
Q Consensus        15 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh   94 (328)
                      +.+|.+|+||||+|+..|+.++++.|++.+.+. +..  +|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus        24 ~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~-n~~--d~~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh   99 (284)
T PHA02791         24 FKADVHGHSALYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTALY   99 (284)
T ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCC-cCC--CCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHH
Confidence            468999999999999999999999999999876 443  4799999999999999999999999998 889999999999


Q ss_pred             HHHHcCcHHHHHHHHHhCCcccccccCCCC-CHHHHHHHcCChhhHHHHHHhhhcCcccccccccc-CCCCchhhHHhhc
Q 046832           95 CAAIKGKVHVLSEMLSACPECIEDVTIQHD-TALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKD-EQGNTVLHLATRK  172 (328)
Q Consensus        95 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~-t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d-~~G~T~Lh~A~~~  172 (328)
                      +|+..|+.++++.|++.+++ ++..+..|+ ||||+|+..|+.+++++|++++.        +..| ..|+||||+|+..
T Consensus       100 ~Aa~~g~~eivk~Ll~~gad-in~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~--------~~~d~~~g~TpLh~Aa~~  170 (284)
T PHA02791        100 YAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP--------STFDLAILLSCIHITIKN  170 (284)
T ss_pred             HHHHcCCHHHHHHHHHCCCC-cCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCC--------cccccccCccHHHHHHHc
Confidence            99999999999999999988 677777775 89999999999999999998421        1123 3589999999999


Q ss_pred             cchh--HHhhcCCCCCC
Q 046832          173 KQRK--ELLLGHGTYSS  187 (328)
Q Consensus       173 ~~~~--~~Ll~~ga~~~  187 (328)
                      |+.+  ++|+++|++..
T Consensus       171 g~~eiv~lLL~~gAd~n  187 (284)
T PHA02791        171 GHVDMMILLLDYMTSTN  187 (284)
T ss_pred             CCHHHHHHHHHCCCCCC
Confidence            9999  99999999543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=1.2e-28  Score=229.66  Aligned_cols=168  Identities=27%  Similarity=0.467  Sum_probs=152.6

Q ss_pred             HHHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCC--------------cccccCCCCCcHHHHHHHCCCHHHHHHHHHc
Q 046832           12 FLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPD--------------LAHEVNQDGFSPMHIASSIGHTGVVRELLKV   77 (328)
Q Consensus        12 ~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--------------~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~   77 (328)
                      ..+|..|.+|.||||.|+..|+.++++.+++.+..              +.+..|.+|.||||+||+.|+.+.++.|+..
T Consensus       216 ~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~  295 (929)
T KOG0510|consen  216 THINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGF  295 (929)
T ss_pred             cccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHc
Confidence            45788899999999999999999999999987643              3455689999999999999999999999999


Q ss_pred             CccccccCCCCCCCHHHHHHHcCcHHHHHHHHH-hCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccc
Q 046832           78 EQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLS-ACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFN  156 (328)
Q Consensus        78 ~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  156 (328)
                      |+++ +.++.++.||||.||..|+.+.++.|++ .+....+..|..|+||||.|+++||.+++++|+++      |++.+
T Consensus       296 Ga~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~------GA~~~  368 (929)
T KOG0510|consen  296 GASI-NSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNK------GALFL  368 (929)
T ss_pred             CCcc-cccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhc------Chhhh
Confidence            9999 9999999999999999999999999999 56566888999999999999999999999999995      44444


Q ss_pred             ---cccCCCCchhhHHhhccchh--HHhhcCCCCC
Q 046832          157 ---MKDEQGNTVLHLATRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       157 ---~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~  186 (328)
                         ..|.+|+||||+|+..|+..  ++|+++|++.
T Consensus       369 ~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  369 NMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI  403 (929)
T ss_pred             cccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence               56999999999999999999  9999999966

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.96  E-value=8.3e-29  Score=230.62  Aligned_cols=166  Identities=20%  Similarity=0.246  Sum_probs=145.8

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHH
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPL   93 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL   93 (328)
                      .+.++.+|.||||+|+..|+.++++.|++.|.+. +..+.+|.||||.|+..|+.+++++|++.|+...+..+.+|.|||
T Consensus        28 ~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL  106 (413)
T PHA02875         28 PNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPL  106 (413)
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHH
Confidence            4456778999999999999999999999998876 667788899999999999999999999998877666778899999


Q ss_pred             HHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhcc
Q 046832           94 HCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKK  173 (328)
Q Consensus        94 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~  173 (328)
                      |+|+..|+.+++++|++.|++ ++..+..|+||||+|+..|+.+++++|++      .|++++.+|..|+||||+|+..|
T Consensus       107 ~~A~~~~~~~iv~~Ll~~gad-~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~------~g~~~~~~d~~g~TpL~~A~~~g  179 (413)
T PHA02875        107 HLATILKKLDIMKLLIARGAD-PDIPNTDKFSPLHLAVMMGDIKGIELLID------HKACLDIEDCCGCTPLIIAMAKG  179 (413)
T ss_pred             HHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHh------cCCCCCCCCCCCCCHHHHHHHcC
Confidence            999999999999999999887 78888889999999999999999999997      57778889999999999999999


Q ss_pred             chh--HHhhcCCCCCC
Q 046832          174 QRK--ELLLGHGTYSS  187 (328)
Q Consensus       174 ~~~--~~Ll~~ga~~~  187 (328)
                      +.+  ++|+++|+...
T Consensus       180 ~~eiv~~Ll~~ga~~n  195 (413)
T PHA02875        180 DIAICKMLLDSGANID  195 (413)
T ss_pred             CHHHHHHHHhCCCCCC
Confidence            888  89999998554

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=230.00  Aligned_cols=165  Identities=24%  Similarity=0.334  Sum_probs=151.0

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccc------------
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL------------   81 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~------------   81 (328)
                      ++..+.+|.||||.|++.|+.+++++|++.|+++ +..+..|.||||.|+..|+.+++++|+++|++.            
T Consensus        28 ~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~-n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~  106 (434)
T PHA02874         28 INISVDETTTPLIDAIRSGDAKIVELFIKHGADI-NHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDM  106 (434)
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHH
Confidence            4566788999999999999999999999999988 788999999999999999999999999887543            


Q ss_pred             ----------cccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCcc
Q 046832           82 ----------CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKR  151 (328)
Q Consensus        82 ----------~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~  151 (328)
                                .+.+|..|.||||+|+..|+.+++++|++.+++ ++..|..|+||||+|+++++.+++++|++      .
T Consensus       107 i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~------~  179 (434)
T PHA02874        107 IKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD-VNIEDDNGCYPIHIAIKHNFFDIIKLLLE------K  179 (434)
T ss_pred             HHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHCCcHHHHHHHHH------C
Confidence                      256788999999999999999999999999988 78899999999999999999999999998      6


Q ss_pred             ccccccccCCCCchhhHHhhccchh--HHhhcCCCCC
Q 046832          152 EEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       152 ~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~  186 (328)
                      |++++.+|.+|+||||+|+..|+.+  ++|+++|+..
T Consensus       180 g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i  216 (434)
T PHA02874        180 GAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI  216 (434)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence            7788999999999999999999999  9999999853

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.7e-28  Score=227.14  Aligned_cols=165  Identities=18%  Similarity=0.270  Sum_probs=153.9

Q ss_pred             hhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHH
Q 046832           15 KLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLH   94 (328)
Q Consensus        15 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh   94 (328)
                      +.++.++.||||.|+..|+.++++.|++.+++..+..+.+|+||||+|+..|+.+++++|+++|+++ +.++..|.||||
T Consensus        62 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh  140 (413)
T PHA02875         62 DVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLH  140 (413)
T ss_pred             cccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHH
Confidence            4556789999999999999999999999998887777889999999999999999999999999998 899999999999


Q ss_pred             HHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCC-chhhHHhhcc
Q 046832           95 CAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGN-TVLHLATRKK  173 (328)
Q Consensus        95 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~-T~Lh~A~~~~  173 (328)
                      +|+..|+.+++++|++.+++ ++..|..|+||||+|+..|+.+++++|++      .|++++..+.+|. ||+|+|+..+
T Consensus       141 ~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~------~ga~~n~~~~~~~~t~l~~A~~~~  213 (413)
T PHA02875        141 LAVMMGDIKGIELLIDHKAC-LDIEDCCGCTPLIIAMAKGDIAICKMLLD------SGANIDYFGKNGCVAALCYAIENN  213 (413)
T ss_pred             HHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHh------CCCCCCcCCCCCCchHHHHHHHcC
Confidence            99999999999999999987 88899999999999999999999999998      6788899998885 7899999999


Q ss_pred             chh--HHhhcCCCCCC
Q 046832          174 QRK--ELLLGHGTYSS  187 (328)
Q Consensus       174 ~~~--~~Ll~~ga~~~  187 (328)
                      +.+  ++|+++|++.+
T Consensus       214 ~~~iv~~Ll~~gad~n  229 (413)
T PHA02875        214 KIDIVRLFIKRGADCN  229 (413)
T ss_pred             CHHHHHHHHHCCcCcc
Confidence            999  99999999654

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=2.7e-28  Score=227.68  Aligned_cols=162  Identities=20%  Similarity=0.210  Sum_probs=132.9

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCC--HHHHHHHHHcCccccccCCCCCC
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGH--TGVVRELLKVEQKLCHQQGPEKN   90 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~--~~iv~~Ll~~~~~~~~~~~~~g~   90 (328)
                      .++.+|.+|.||||+|++.|+.++++.|+++|+++ +.+|.+|+||||+|+..++  .+++++|+++|+++....|.+|.
T Consensus        64 dvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~  142 (446)
T PHA02946         64 SPNETDDDGNYPLHIASKINNNRIVAMLLTHGADP-NACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGC  142 (446)
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCC
Confidence            45788999999999999999999999999999988 7889999999999988664  78899999999988445788888


Q ss_pred             CHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCC--hhhHHHHHHhhhcCccccccccccCCCCchhhH
Q 046832           91 TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQ--FEAITVLVNWIRGMKREEIFNMKDEQGNTVLHL  168 (328)
Q Consensus        91 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~--~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~  168 (328)
                      |||| |+..|+.++++.|++.+.+ ++..|..|+||||+|+..++  .+++++|++      .|+++|.+|.+|+||||+
T Consensus       143 tpL~-aa~~~~~~vv~~Ll~~gad-~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~------~Gadin~~d~~G~TpLH~  214 (446)
T PHA02946        143 GPLL-ACTDPSERVFKKIMSIGFE-ARIVDKFGKNHIHRHLMSDNPKASTISWMMK------LGISPSKPDHDGNTPLHI  214 (446)
T ss_pred             cHHH-HHHCCChHHHHHHHhcccc-ccccCCCCCCHHHHHHHhcCCCHHHHHHHHH------cCCCCcccCCCCCCHHHH
Confidence            9987 6667888888888888876 77788888888888876554  578888887      677788888888888888


Q ss_pred             Hhhcc--chh--HHhhcCCC
Q 046832          169 ATRKK--QRK--ELLLGHGT  184 (328)
Q Consensus       169 A~~~~--~~~--~~Ll~~ga  184 (328)
                      |+..+  +.+  ++|+. |+
T Consensus       215 Aa~~~~~~~~iv~lLl~-ga  233 (446)
T PHA02946        215 VCSKTVKNVDIINLLLP-ST  233 (446)
T ss_pred             HHHcCCCcHHHHHHHHc-CC
Confidence            88775  334  66663 65

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=6.8e-28  Score=228.30  Aligned_cols=164  Identities=23%  Similarity=0.318  Sum_probs=143.8

Q ss_pred             hhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHH-------------------------
Q 046832           15 KLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTG-------------------------   69 (328)
Q Consensus        15 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~-------------------------   69 (328)
                      +..+..+.||||.|++.|+.++++.|+++|.++ +.+|.+|+||||+||..|+.+                         
T Consensus        31 ~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadv-n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~  109 (477)
T PHA02878         31 TSASLIPFIPLHQAVEARNLDVVKSLLTRGHNV-NQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAF  109 (477)
T ss_pred             CcccccCcchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHH
Confidence            344567889999999999999999999999988 889999999999999876543                         


Q ss_pred             ---------------------------------------HHHHHHHcCccccccCCCC-CCCHHHHHHHcCcHHHHHHHH
Q 046832           70 ---------------------------------------VVRELLKVEQKLCHQQGPE-KNTPLHCAAIKGKVHVLSEML  109 (328)
Q Consensus        70 ---------------------------------------iv~~Ll~~~~~~~~~~~~~-g~tpLh~Aa~~g~~~~v~~Ll  109 (328)
                                                             ++++|+++|+++ +.+|.+ |.||||+|+..|+.++++.|+
T Consensus       110 ~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~Ll  188 (477)
T PHA02878        110 NNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELLL  188 (477)
T ss_pred             HcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHHH
Confidence                                                   555666667776 667777 999999999999999999999


Q ss_pred             HhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhc-cchh--HHhhcCCCCC
Q 046832          110 SACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK-KQRK--ELLLGHGTYS  186 (328)
Q Consensus       110 ~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~-~~~~--~~Ll~~ga~~  186 (328)
                      +.|++ ++..|..|+||||.|++.++.+++++|++      .|++++.+|.+|+||||+|+.. ++.+  ++|+++|++.
T Consensus       189 ~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~------~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadv  261 (477)
T PHA02878        189 SYGAN-VNIPDKTNNSPLHHAVKHYNKPIVHILLE------NGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDV  261 (477)
T ss_pred             HCCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHH------cCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCC
Confidence            99988 88899999999999999999999999998      6888999999999999999976 5666  9999999965


Q ss_pred             C
Q 046832          187 S  187 (328)
Q Consensus       187 ~  187 (328)
                      .
T Consensus       262 n  262 (477)
T PHA02878        262 N  262 (477)
T ss_pred             C
Confidence            4

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.7e-28  Score=228.38  Aligned_cols=163  Identities=25%  Similarity=0.307  Sum_probs=147.1

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCH
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTP   92 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp   92 (328)
                      +++.+|..|.||||+|+..|+.++++.|++.|+++ +.+|.+|.||||+|+..|+.+++++|+++|+++ +.+|..|.||
T Consensus       116 d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~-n~~~~~g~tp  193 (434)
T PHA02874        116 DVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA-NVKDNNGESP  193 (434)
T ss_pred             CCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCH
Confidence            35678899999999999999999999999999998 888999999999999999999999999999998 8899999999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhc
Q 046832           93 LHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK  172 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~  172 (328)
                      ||+|+..|+.+++++|++.+++ ++..+..|+||||.|+..++ +.+++|+       .+.++|.+|.+|+||||+|+..
T Consensus       194 L~~A~~~g~~~iv~~Ll~~g~~-i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-------~~~~in~~d~~G~TpLh~A~~~  264 (434)
T PHA02874        194 LHNAAEYGDYACIKLLIDHGNH-IMNKCKNGFTPLHNAIIHNR-SAIELLI-------NNASINDQDIDGSTPLHHAINP  264 (434)
T ss_pred             HHHHHHcCCHHHHHHHHhCCCC-CcCCCCCCCCHHHHHHHCCh-HHHHHHH-------cCCCCCCcCCCCCCHHHHHHhc
Confidence            9999999999999999999988 78888999999999999865 5666665       3567899999999999999987


Q ss_pred             c-chh--HHhhcCCCCC
Q 046832          173 K-QRK--ELLLGHGTYS  186 (328)
Q Consensus       173 ~-~~~--~~Ll~~ga~~  186 (328)
                      + +.+  ++|+++|++.
T Consensus       265 ~~~~~iv~~Ll~~gad~  281 (434)
T PHA02874        265 PCDIDIIDILLYHKADI  281 (434)
T ss_pred             CCcHHHHHHHHHCcCCC
Confidence            6 445  9999999844

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.4e-27  Score=201.15  Aligned_cols=167  Identities=16%  Similarity=0.182  Sum_probs=133.9

Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCC--CHHHHHHHHHcCccccccCC-CCCCCHHH
Q 046832           18 ALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIG--HTGVVRELLKVEQKLCHQQG-PEKNTPLH   94 (328)
Q Consensus        18 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g--~~~iv~~Ll~~~~~~~~~~~-~~g~tpLh   94 (328)
                      ...+.||||.|+..|+.+.++.|++.    .+..|..|.||||+|+..+  +.+++++|+++|+++ +.++ .+|.||||
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh   92 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALH   92 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHH
Confidence            66778999999999999999999874    2557888999999998754  889999999999988 6665 57899999


Q ss_pred             HHHHc---CcHHHHHHHHHhCCcccccccCCCCCHHHHHHH--cCChhhHHHHHHhhhcCccccccccccCCCCchhhH-
Q 046832           95 CAAIK---GKVHVLSEMLSACPECIEDVTIQHDTALHLAIK--NNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHL-  168 (328)
Q Consensus        95 ~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~-  168 (328)
                      +|+..   ++.++++.|++++++ ++.+|..|+||||+|+.  .++.+++++|++      .|++++.+|.+|+||||. 
T Consensus        93 ~a~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~------~gadin~~d~~g~t~Lh~~  165 (209)
T PHA02859         93 HYLSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLID------SGVSFLNKDFDNNNILYSY  165 (209)
T ss_pred             HHHHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHHH------cCCCcccccCCCCcHHHHH
Confidence            88753   478999999998887 88889999999998876  457899999987      678888899999999995 


Q ss_pred             Hhhccchh--HHhhcCCCCCCchhhHHHhhhhcccC
Q 046832          169 ATRKKQRK--ELLLGHGTYSSGRLELIALHQQRQLD  202 (328)
Q Consensus       169 A~~~~~~~--~~Ll~~ga~~~~~~~~~~~~~~~~~~  202 (328)
                      |+..++.+  ++|+++|+      +++..+..+.++
T Consensus       166 a~~~~~~~iv~~Ll~~Ga------di~~~d~~g~tp  195 (209)
T PHA02859        166 ILFHSDKKIFDFLTSLGI------DINETNKSGYNC  195 (209)
T ss_pred             HHhcCCHHHHHHHHHcCC------CCCCCCCCCCCH
Confidence            45566666  88999998      344444444444

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.95  E-value=5.6e-28  Score=228.85  Aligned_cols=142  Identities=19%  Similarity=0.290  Sum_probs=118.0

Q ss_pred             HHHHHHhcCCCcccccCCC-CCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCc
Q 046832           36 FVKEIINVRPDLAHEVNQD-GFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPE  114 (328)
Q Consensus        36 ~v~~Ll~~~~~~~~~~d~~-g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  114 (328)
                      +++.|++.|+++ +..|.. |+||||+|+..|+.+++++|+++|+++ +.+|..|.||||.|+..|+.++++.|++.|++
T Consensus       149 iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~  226 (477)
T PHA02878        149 ITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLENGAS  226 (477)
T ss_pred             HHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            444445555555 556666 999999999999999999999999998 88999999999999999999999999999988


Q ss_pred             ccccccCCCCCHHHHHHHc-CChhhHHHHHHhhhcCccccccccccC-CCCchhhHHhhccchhHHhhcCCCCC
Q 046832          115 CIEDVTIQHDTALHLAIKN-NQFEAITVLVNWIRGMKREEIFNMKDE-QGNTVLHLATRKKQRKELLLGHGTYS  186 (328)
Q Consensus       115 ~~~~~~~~g~t~Lh~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~~~d~-~G~T~Lh~A~~~~~~~~~Ll~~ga~~  186 (328)
                       ++.+|..|+||||+|+.. ++.+++++|++      .|+++|.++. .|+||||+|+.....-++|+++|++.
T Consensus       227 -in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~------~gadvn~~~~~~g~TpLh~A~~~~~~v~~Ll~~gadi  293 (477)
T PHA02878        227 -TDARDKCGNTPLHISVGYCKDYDILKLLLE------HGVDVNAKSYILGLTALHSSIKSERKLKLLLEYGADI  293 (477)
T ss_pred             -CCCCCCCCCCHHHHHHHhcCCHHHHHHHHH------cCCCCCccCCCCCCCHHHHHccCHHHHHHHHHCCCCC
Confidence             888999999999999975 68999999998      6778888876 79999999944322228999999843

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.95  E-value=5.6e-28  Score=229.34  Aligned_cols=163  Identities=24%  Similarity=0.314  Sum_probs=130.0

Q ss_pred             HhhccCCCChHHHHHH--HcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCC--CHHHHHHHHHcCccccccCCCCC
Q 046832           14 VKLKALRKGNPLHVAS--AYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIG--HTGVVRELLKVEQKLCHQQGPEK   89 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~--~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g--~~~iv~~Ll~~~~~~~~~~~~~g   89 (328)
                      ++..|..|.||||+|+  ..|+.++++.|++.|.++ +..|..|.||||+|+..|  +.+++++|+++|+++ +.+|..|
T Consensus        99 i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g  176 (480)
T PHA03100         99 VNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYG  176 (480)
T ss_pred             CCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCC
Confidence            3556777888888888  788888888888887776 677778888888888888  788888888888777 7777788


Q ss_pred             CCHHHHHHHcCcHHHHHHHHHhCCcccccccCCC------CCHHHHHHHcCC--hhhHHHHHHhhhcCccccccccccCC
Q 046832           90 NTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH------DTALHLAIKNNQ--FEAITVLVNWIRGMKREEIFNMKDEQ  161 (328)
Q Consensus        90 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g------~t~Lh~A~~~~~--~~~~~~Ll~~~~~~~~~~~~~~~d~~  161 (328)
                      .||||+|+..|+.+++++|++.|++ ++..+..|      .||||.|+..++  .+++++|++      .|+++|.+|.+
T Consensus       177 ~tpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~------~g~din~~d~~  249 (480)
T PHA03100        177 YTPLHIAVEKGNIDVIKFLLDNGAD-INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS------YGVPINIKDVY  249 (480)
T ss_pred             CCHHHHHHHhCCHHHHHHHHHcCCC-ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH------cCCCCCCCCCC
Confidence            8888888888888888888887776 56666666      777888887777  778888876      56778889999


Q ss_pred             CCchhhHHhhccchh--HHhhcCCCC
Q 046832          162 GNTVLHLATRKKQRK--ELLLGHGTY  185 (328)
Q Consensus       162 G~T~Lh~A~~~~~~~--~~Ll~~ga~  185 (328)
                      |+||||+|+..++.+  ++|+++|++
T Consensus       250 g~TpL~~A~~~~~~~iv~~Ll~~gad  275 (480)
T PHA03100        250 GFTPLHYAVYNNNPEFVKYLLDLGAN  275 (480)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999988888  889999883

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3e-27  Score=199.24  Aligned_cols=159  Identities=13%  Similarity=0.174  Sum_probs=140.9

Q ss_pred             hhHHHHHHHhhccCCCChHHHHHHHcC--CHHHHHHHHhcCCCcccccC-CCCCcHHHHHHHC---CCHHHHHHHHHcCc
Q 046832            6 AIKAFIFLVKLKALRKGNPLHVASAYG--HVDFVKEIINVRPDLAHEVN-QDGFSPMHIASSI---GHTGVVRELLKVEQ   79 (328)
Q Consensus         6 ~~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~   79 (328)
                      .++.+....+.+|..|.||||.|+..+  +.++++.|++.|+++ +.++ ..|.||||+|+..   ++.+++++|+++|+
T Consensus        36 ~vk~Li~~~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~ga  114 (209)
T PHA02859         36 GVKKWIKFVNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGS  114 (209)
T ss_pred             HHHHHHHhhhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCC
Confidence            345555667889999999999999854  899999999999999 6665 5899999998864   47999999999999


Q ss_pred             cccccCCCCCCCHHHHHHH--cCcHHHHHHHHHhCCcccccccCCCCCHHHH-HHHcCChhhHHHHHHhhhcCccccccc
Q 046832           80 KLCHQQGPEKNTPLHCAAI--KGKVHVLSEMLSACPECIEDVTIQHDTALHL-AIKNNQFEAITVLVNWIRGMKREEIFN  156 (328)
Q Consensus        80 ~~~~~~~~~g~tpLh~Aa~--~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~-A~~~~~~~~~~~Ll~~~~~~~~~~~~~  156 (328)
                      ++ +.+|.+|.||||.|+.  .++.+++++|++.+.+ ++.+|..|+||||. |+..++.+++++|++      .|++++
T Consensus       115 di-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad-in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~------~Gadi~  186 (209)
T PHA02859        115 SI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS-FLNKDFDNNNILYSYILFHSDKKIFDFLTS------LGIDIN  186 (209)
T ss_pred             CC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC-cccccCCCCcHHHHHHHhcCCHHHHHHHHH------cCCCCC
Confidence            99 9999999999999876  4689999999999988 88899999999996 567889999999998      688899


Q ss_pred             cccCCCCchhhHHhhcc
Q 046832          157 MKDEQGNTVLHLATRKK  173 (328)
Q Consensus       157 ~~d~~G~T~Lh~A~~~~  173 (328)
                      .+|..|+||||+|..++
T Consensus       187 ~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        187 ETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCCCCCCCHHHHHhhhh
Confidence            99999999999998754

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.95  E-value=1.4e-27  Score=230.52  Aligned_cols=164  Identities=19%  Similarity=0.214  Sum_probs=143.6

Q ss_pred             Hhhc-cCCCChHHHHHHH--cCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCC--HHHHHHHHHcCccccccCCCC
Q 046832           14 VKLK-ALRKGNPLHVASA--YGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGH--TGVVRELLKVEQKLCHQQGPE   88 (328)
Q Consensus        14 ~~~~-~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~--~~iv~~Ll~~~~~~~~~~~~~   88 (328)
                      ++.+ |..|.||||.|+.  .++.+++++|++.|+++ +.+|.+|.||||+|+..|+  .+++++|+++|+++ +.+|..
T Consensus       169 IN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV-N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~  246 (764)
T PHA02716        169 LNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNV-NLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM-DMKCVN  246 (764)
T ss_pred             cccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCC
Confidence            4555 8889999999875  46899999999999998 8899999999999999995  59999999999998 999999


Q ss_pred             CCCHHHHH-------------------------------------HHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHH
Q 046832           89 KNTPLHCA-------------------------------------AIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAI  131 (328)
Q Consensus        89 g~tpLh~A-------------------------------------a~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~  131 (328)
                      |.||||.|                                     +..|+.++++.|++.|++ ++.+|..|+||||+|+
T Consensus       247 G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd-IN~kD~~G~TPLH~Aa  325 (764)
T PHA02716        247 GMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK-LHYKDSAGRTCLHQYI  325 (764)
T ss_pred             CCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc-eeccCCCCCCHHHHHH
Confidence            99999975                                     455788999999999988 8889999999999986


Q ss_pred             H--cCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhc--------------cchh--HHhhcCCCCC
Q 046832          132 K--NNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK--------------KQRK--ELLLGHGTYS  186 (328)
Q Consensus       132 ~--~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~--------------~~~~--~~Ll~~ga~~  186 (328)
                      .  +++.+++++|++      .|+++|.+|.+|+||||+|+..              ++.+  ++|+++|++.
T Consensus       326 a~~~~~~eIVklLLe------~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADI  392 (764)
T PHA02716        326 LRHNISTDIIKLLHE------YGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADI  392 (764)
T ss_pred             HHhCCCchHHHHHHH------cCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCC
Confidence            4  568899999998      6888999999999999998752              3445  9999999944

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.4e-27  Score=225.09  Aligned_cols=166  Identities=28%  Similarity=0.376  Sum_probs=155.7

Q ss_pred             HHhhccCCCChHHHHHHHcC--CHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCC-
Q 046832           13 LVKLKALRKGNPLHVASAYG--HVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEK-   89 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g-   89 (328)
                      .++.+|..|.||||.|+..|  +.++++.|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|+++ +..+..| 
T Consensus       133 ~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~  210 (480)
T PHA03100        133 NVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADI-NAGDIETL  210 (480)
T ss_pred             CCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCc-cCCCCCCC
Confidence            35668899999999999999  999999999999998 888899999999999999999999999999998 7888888 


Q ss_pred             -----CCHHHHHHHcCc--HHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCC
Q 046832           90 -----NTPLHCAAIKGK--VHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQG  162 (328)
Q Consensus        90 -----~tpLh~Aa~~g~--~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G  162 (328)
                           .||||.|+..|+  .+++++|++.|.+ ++.+|..|+||||+|+..|+.+++++|++      .|+++|.+|.+|
T Consensus       211 ~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~d-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~------~gad~n~~d~~g  283 (480)
T PHA03100        211 LFTIFETPLHIAACYNEITLEVVNYLLSYGVP-INIKDVYGFTPLHYAVYNNNPEFVKYLLD------LGANPNLVNKYG  283 (480)
T ss_pred             cHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCccCCCC
Confidence                 999999999999  9999999999987 88899999999999999999999999998      678899999999


Q ss_pred             CchhhHHhhccchh--HHhhcCCCCCC
Q 046832          163 NTVLHLATRKKQRK--ELLLGHGTYSS  187 (328)
Q Consensus       163 ~T~Lh~A~~~~~~~--~~Ll~~ga~~~  187 (328)
                      +||||+|+..++.+  ++|+++|+...
T Consensus       284 ~tpl~~A~~~~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        284 DTPLHIAILNNNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhcCCCHH
Confidence            99999999999988  99999999443

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.6e-27  Score=224.87  Aligned_cols=171  Identities=19%  Similarity=0.168  Sum_probs=148.0

Q ss_pred             HHhhccCCCChHHHHHHHc-----CCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCC---CHHHHHHHHHcCcccccc
Q 046832           13 LVKLKALRKGNPLHVASAY-----GHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIG---HTGVVRELLKVEQKLCHQ   84 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~-----g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g---~~~iv~~Ll~~~~~~~~~   84 (328)
                      +++.+|..|.||||.|+.+     ++.++++.|++.|+++ +.+|.+|+||||+|+..|   +.+++++|+++|+++ +.
T Consensus        63 dvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~  140 (489)
T PHA02798         63 NVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI-NKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-TL  140 (489)
T ss_pred             CCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC-CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cc
Confidence            4667889999999999864     6789999999999997 889999999999999876   789999999999998 89


Q ss_pred             CCCCCCCHHHHHHHcCc---HHHHHHHHHhCCcccccc-cCCCCCHHHHHHHc----CChhhHHHHHHhhhcCcc-----
Q 046832           85 QGPEKNTPLHCAAIKGK---VHVLSEMLSACPECIEDV-TIQHDTALHLAIKN----NQFEAITVLVNWIRGMKR-----  151 (328)
Q Consensus        85 ~~~~g~tpLh~Aa~~g~---~~~v~~Ll~~~~~~~~~~-~~~g~t~Lh~A~~~----~~~~~~~~Ll~~~~~~~~-----  151 (328)
                      +|.+|.||||+|++.|+   .++++.|++.|++ ++.. +..|.||||.++++    ++.+++++|+++|.+...     
T Consensus       141 ~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gad-in~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~  219 (489)
T PHA02798        141 LDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVD-INTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSH  219 (489)
T ss_pred             cCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCC-cccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccc
Confidence            99999999999999998   9999999999988 5555 45788999998765    478999999987653321     


Q ss_pred             ----------------------------ccccccccCCCCchhhHHhhccchh--HHhhcCCCCC
Q 046832          152 ----------------------------EEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       152 ----------------------------~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~  186 (328)
                                                  ++++|.+|..|+||||+|+..++.+  ++|+++|++.
T Consensus       220 ~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdi  284 (489)
T PHA02798        220 KKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDI  284 (489)
T ss_pred             cchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence                                        3468889999999999999999888  9999999943

>PHA02798 ankyrin-like protein; Provisional

Probab=99.94  E-value=2.6e-26  Score=217.93  Aligned_cols=167  Identities=19%  Similarity=0.224  Sum_probs=147.9

Q ss_pred             HHhhccCCCChHHHHHHHcC---CHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCC---HHHHHHHHHcCccccccC-
Q 046832           13 LVKLKALRKGNPLHVASAYG---HVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGH---TGVVRELLKVEQKLCHQQ-   85 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~---~~iv~~Ll~~~~~~~~~~-   85 (328)
                      +++.+|..|+||||+|+..|   +.+++++|+++|+++ +..|.+|.||||+|+..|+   .+++++|+++|+++ +.+ 
T Consensus       101 diN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi-n~~~  178 (489)
T PHA02798        101 DINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI-NTHN  178 (489)
T ss_pred             CCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCc-cccc
Confidence            46788999999999999986   789999999999998 8999999999999999998   99999999999998 555 


Q ss_pred             CCCCCCHHHHHHHc----CcHHHHHHHHHhCCc--------------------------------------ccccccCCC
Q 046832           86 GPEKNTPLHCAAIK----GKVHVLSEMLSACPE--------------------------------------CIEDVTIQH  123 (328)
Q Consensus        86 ~~~g~tpLh~Aa~~----g~~~~v~~Ll~~~~~--------------------------------------~~~~~~~~g  123 (328)
                      +..|.||||.++..    ++.+++++|+++|.+                                      +++.+|..|
T Consensus       179 ~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G  258 (489)
T PHA02798        179 NKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELG  258 (489)
T ss_pred             CcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCC
Confidence            56799999998765    478999999887653                                      134567789


Q ss_pred             CCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcCCCCCC
Q 046832          124 DTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTYSS  187 (328)
Q Consensus       124 ~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~~  187 (328)
                      +||||+|+.+|+.+++++|++      .|+++|.+|.+|+||||+|+..++.+  +.|+++|+...
T Consensus       259 ~TPL~~A~~~~~~~~v~~LL~------~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        259 FNPLYYSVSHNNRKIFEYLLQ------LGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             ccHHHHHHHcCcHHHHHHHHH------cCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence            999999999999999999998      78899999999999999999999888  88999998543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.94  E-value=3.1e-26  Score=217.73  Aligned_cols=166  Identities=16%  Similarity=0.208  Sum_probs=116.3

Q ss_pred             HHhhccCCCChHHHHHHHc---CCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHC--CCHHHHHHHHHcCccccccCCC
Q 046832           13 LVKLKALRKGNPLHVASAY---GHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSI--GHTGVVRELLKVEQKLCHQQGP   87 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~--g~~~iv~~Ll~~~~~~~~~~~~   87 (328)
                      +++.+|.+|.||||.|+..   |+.+++++|+++|+++.+..|..|+||||+|+..  ++.+++++|+++|+++....+.
T Consensus       100 din~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~  179 (494)
T PHA02989        100 DINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSL  179 (494)
T ss_pred             CCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccc
Confidence            3566778888888877654   5678888888888877556777888888887654  5778888888888887333577


Q ss_pred             CCCCHHHHHHHcC----cHHHHHHHHHhCCcc-------------------------------------cccccCCCCCH
Q 046832           88 EKNTPLHCAAIKG----KVHVLSEMLSACPEC-------------------------------------IEDVTIQHDTA  126 (328)
Q Consensus        88 ~g~tpLh~Aa~~g----~~~~v~~Ll~~~~~~-------------------------------------~~~~~~~g~t~  126 (328)
                      .|.||||+|+..+    +.+++++|+++|++.                                     ++.+|..|+||
T Consensus       180 ~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~Tp  259 (494)
T PHA02989        180 YGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNP  259 (494)
T ss_pred             cCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCH
Confidence            7888888876654    778888888776641                                     12334456677


Q ss_pred             HHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcCCC
Q 046832          127 LHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGT  184 (328)
Q Consensus       127 Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga  184 (328)
                      ||+|+..|+.+++++|++      .|+++|.+|.+|+||||+|+..++.+  +.|++.+.
T Consensus       260 L~~Aa~~~~~~~v~~LL~------~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        260 LLISAKVDNYEAFNYLLK------LGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             HHHHHHhcCHHHHHHHHH------cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            777777777777777766      56666667777777777777766666  56665554

>PHA02946 ankyin-like protein; Provisional

Probab=99.94  E-value=5e-26  Score=212.38  Aligned_cols=172  Identities=16%  Similarity=0.161  Sum_probs=148.2

Q ss_pred             hhHHHHHHHhhccCCC-ChHHHHHHH--cCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCcccc
Q 046832            6 AIKAFIFLVKLKALRK-GNPLHVASA--YGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC   82 (328)
Q Consensus         6 ~~~~~~~~~~~~~~~g-~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~   82 (328)
                      .++.+...++.....| .++||.++.  .++.++++.|+++|.++ +.+|.+|+||||+|++.|+.+++++|+++|+++ 
T Consensus        21 n~~~~~~~l~~~~~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi-   98 (446)
T PHA02946         21 NLDVFRNMLQAIEPSGNYHILHAYCGIKGLDERFVEELLHRGYSP-NETDDDGNYPLHIASKINNNRIVAMLLTHGADP-   98 (446)
T ss_pred             cHHHHHHHHhccCCCCCChHHHHHHHhcCCCHHHHHHHHHCcCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-
Confidence            3555666666666555 699998774  45789999999999998 889999999999999999999999999999999 


Q ss_pred             ccCCCCCCCHHHHHHHcC--cHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccC
Q 046832           83 HQQGPEKNTPLHCAAIKG--KVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDE  160 (328)
Q Consensus        83 ~~~~~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~  160 (328)
                      +.+|.+|.||||+|+..+  ..++++.|+++|++.....|..|.|||| |+..++.+++++|++      .|++++.+|.
T Consensus        99 n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~------~gad~~~~d~  171 (446)
T PHA02946         99 NACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMS------IGFEARIVDK  171 (446)
T ss_pred             CCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHh------ccccccccCC
Confidence            899999999999998876  4799999999999833357899999998 666789999999998      6788999999


Q ss_pred             CCCchhhHHhhccch--h--HHhhcCCCCC
Q 046832          161 QGNTVLHLATRKKQR--K--ELLLGHGTYS  186 (328)
Q Consensus       161 ~G~T~Lh~A~~~~~~--~--~~Ll~~ga~~  186 (328)
                      .|+||||+|+..++.  +  ++|+++|++.
T Consensus       172 ~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi  201 (446)
T PHA02946        172 FGKNHIHRHLMSDNPKASTISWMMKLGISP  201 (446)
T ss_pred             CCCCHHHHHHHhcCCCHHHHHHHHHcCCCC
Confidence            999999999887664  3  8999999944

>PHA03095 ankyrin-like protein; Provisional

Probab=99.94  E-value=4.2e-26  Score=216.06  Aligned_cols=170  Identities=19%  Similarity=0.203  Sum_probs=128.7

Q ss_pred             HHhhccCCCChHHHHHHHcC-CHHHHHHHHhcCCCcccccCCCCCcHHHHHH--HCCCHHHHHHHHHcCccccccCCCCC
Q 046832           13 LVKLKALRKGNPLHVASAYG-HVDFVKEIINVRPDLAHEVNQDGFSPMHIAS--SIGHTGVVRELLKVEQKLCHQQGPEK   89 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa--~~g~~~iv~~Ll~~~~~~~~~~~~~g   89 (328)
                      +++.+|..|.||||+|+..| +.++++.|++.|.++ +.+|..|+||||+|+  ..++.+++++|+++|+++ +.+|..|
T Consensus        75 din~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~i-n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g  152 (471)
T PHA03095         75 DVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADV-NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYG  152 (471)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCC
Confidence            56788889999999999999 599999999999887 888889999999999  556788999999999888 7888888


Q ss_pred             CCHHHHHHHcC--cHHHHHHHHHhCCcccccccCCCCCHHHHHHHc--CChhhHHHHHHhhhcC----------------
Q 046832           90 NTPLHCAAIKG--KVHVLSEMLSACPECIEDVTIQHDTALHLAIKN--NQFEAITVLVNWIRGM----------------  149 (328)
Q Consensus        90 ~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~--~~~~~~~~Ll~~~~~~----------------  149 (328)
                      .||||+|+..+  +.++++.|++.+++ +...|..|+||||+|+..  ++.++++.|++.+.++                
T Consensus       153 ~tpL~~a~~~~~~~~~iv~~Ll~~g~~-~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~  231 (471)
T PHA03095        153 MTPLAVLLKSRNANVELLRLLIDAGAD-VYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMAT  231 (471)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHh
Confidence            88888887765  56778888877766 444466666666666653  4455555555422111                


Q ss_pred             -------------ccccccccccCCCCchhhHHhhccchh--HHhhcCCCC
Q 046832          150 -------------KREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTY  185 (328)
Q Consensus       150 -------------~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~  185 (328)
                                   ..|.++|.+|.+|+||||+|+..|+.+  ++|+++|++
T Consensus       232 ~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad  282 (471)
T PHA03095        232 GSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGAD  282 (471)
T ss_pred             cCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                         146677777777888888887777777  777777773

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.94  E-value=2.8e-26  Score=209.91  Aligned_cols=158  Identities=24%  Similarity=0.308  Sum_probs=145.8

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhc-CCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCC-CCCCCHHHHHHH
Q 046832           21 KGNPLHVASAYGHVDFVKEIINV-RPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQG-PEKNTPLHCAAI   98 (328)
Q Consensus        21 g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpLh~Aa~   98 (328)
                      ..+..+.|++.|.++-++.|++. +.++ +..|++|.|+||+||.+++.+++|+|+++|+++ +..+ .-+.||||+|++
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v-~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAar  121 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESV-NNPDREGVTLLHWAAINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAAR  121 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCC-CCCCcCCccceeHHHHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHHH
Confidence            35678999999999999999998 5555 889999999999999999999999999999999 5555 779999999999


Q ss_pred             cCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--
Q 046832           99 KGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--  176 (328)
Q Consensus        99 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--  176 (328)
                      +|+..+|+.|+++|++ +..+|.+|.||+|.|++.+|.-.+-+|+.      ++++++.+|.+|+||||+|+.++...  
T Consensus       122 ~G~~~vv~lLlqhGAd-pt~~D~~G~~~lHla~~~~~~~~vayll~------~~~d~d~~D~~grTpLmwAaykg~~~~v  194 (600)
T KOG0509|consen  122 NGHISVVDLLLQHGAD-PTLKDKQGLTPLHLAAQFGHTALVAYLLS------KGADIDLRDNNGRTPLMWAAYKGFALFV  194 (600)
T ss_pred             cCcHHHHHHHHHcCCC-CceecCCCCcHHHHHHHhCchHHHHHHHH------hcccCCCcCCCCCCHHHHHHHhcccHHH
Confidence            9999999999999999 99999999999999999999999999998      67899999999999999999999888  


Q ss_pred             HHhhcCCCCCC
Q 046832          177 ELLLGHGTYSS  187 (328)
Q Consensus       177 ~~Ll~~ga~~~  187 (328)
                      +.|++.|+...
T Consensus       195 ~~LL~f~a~~~  205 (600)
T KOG0509|consen  195 RRLLKFGASLL  205 (600)
T ss_pred             HHHHHhccccc
Confidence            88888888543

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.94  E-value=4.4e-26  Score=224.85  Aligned_cols=163  Identities=25%  Similarity=0.440  Sum_probs=108.9

Q ss_pred             hhccCCCChHHHHHHHcC-CHHHHHHHHhcCCCcccccCCCCCcHHHHHHHC-CCHHHHHHHHHcCccccccCCCCCCCH
Q 046832           15 KLKALRKGNPLHVASAYG-HVDFVKEIINVRPDLAHEVNQDGFSPMHIASSI-GHTGVVRELLKVEQKLCHQQGPEKNTP   92 (328)
Q Consensus        15 ~~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~-g~~~iv~~Ll~~~~~~~~~~~~~g~tp   92 (328)
                      +.+|.+|+||||+|+..| +.++++.|++.|.++ +..|..|+||||+|+.. ++.++++.|++.|+++ +.+|..|.||
T Consensus       301 n~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadi-n~~d~~G~Tp  378 (682)
T PHA02876        301 NAKNIKGETPLYLMAKNGYDTENIRTLIMLGADV-NAADRLYITPLHQASTLDRNKDIVITLLELGANV-NARDYCDKTP  378 (682)
T ss_pred             CCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC-CCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCC-ccCCCCCCCH
Confidence            445556666666666665 356666666666555 55566666666666653 3456666666666666 6666666666


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCC-hhhHHHHHHhhhcCccccccccccCCCCchhhHHhh
Q 046832           93 LHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQ-FEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATR  171 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~-~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~  171 (328)
                      ||+|+..|+.++++.|++.|++ ++..+..|+||||+|+..++ .+++++|++      .|+++|.+|.+|+||||+|+.
T Consensus       379 Lh~Aa~~~~~~iv~~Ll~~gad-~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~------~gadin~~d~~G~TpLh~Aa~  451 (682)
T PHA02876        379 IHYAAVRNNVVIINTLLDYGAD-IEALSQKIGTALHFALCGTNPYMSVKTLID------RGANVNSKNKDLSTPLHYACK  451 (682)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC-ccccCCCCCchHHHHHHcCCHHHHHHHHHh------CCCCCCcCCCCCChHHHHHHH
Confidence            6666666666666666666665 55666666666666665444 345666665      578889999999999999998


Q ss_pred             cc-chh--HHhhcCCCCC
Q 046832          172 KK-QRK--ELLLGHGTYS  186 (328)
Q Consensus       172 ~~-~~~--~~Ll~~ga~~  186 (328)
                      .+ +.+  ++|+++|++.
T Consensus       452 ~~~~~~iv~lLl~~Gad~  469 (682)
T PHA02876        452 KNCKLDVIEMLLDNGADV  469 (682)
T ss_pred             hCCcHHHHHHHHHCCCCC
Confidence            76 445  9999999844

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=1e-25  Score=204.52  Aligned_cols=162  Identities=14%  Similarity=0.075  Sum_probs=144.8

Q ss_pred             hccCCCChHHHHHHH--cCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccC-----CCC
Q 046832           16 LKALRKGNPLHVASA--YGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQ-----GPE   88 (328)
Q Consensus        16 ~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~-----~~~   88 (328)
                      .++.+++|+||.++.  .|+.+++++|+++|+++ +.  .++.||||.|+..|+.+++++|+++|++..+..     +..
T Consensus       111 ~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~  187 (437)
T PHA02795        111 KNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKII  187 (437)
T ss_pred             hccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhh
Confidence            467789999999999  89999999999999998 44  356899999999999999999999998553333     234


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhH
Q 046832           89 KNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHL  168 (328)
Q Consensus        89 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~  168 (328)
                      |.+++|.|+..++.++++.|+++|++ ++.+|..|+||||+|+..|+.+++++|++      .|+++|.+|.+|+||||+
T Consensus       188 ~~t~l~~a~~~~~~eIve~LIs~GAD-IN~kD~~G~TpLh~Aa~~g~~eiVelLL~------~GAdIN~~d~~G~TpLh~  260 (437)
T PHA02795        188 QYTRGFLVDEPTVLEIYKLCIPYIED-INQLDAGGRTLLYRAIYAGYIDLVSWLLE------NGANVNAVMSNGYTCLDV  260 (437)
T ss_pred             ccchhHHHHhcCHHHHHHHHHhCcCC-cCcCCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCCHHHH
Confidence            88999999999999999999999998 89999999999999999999999999998      788999999999999999


Q ss_pred             Hhhccc--------hh--HHhhcCCCCCC
Q 046832          169 ATRKKQ--------RK--ELLLGHGTYSS  187 (328)
Q Consensus       169 A~~~~~--------~~--~~Ll~~ga~~~  187 (328)
                      |+..|+        .+  ++|+++|+...
T Consensus       261 Aa~~g~~~~~~~~~~eIvelLL~~gadI~  289 (437)
T PHA02795        261 AVDRGSVIARRETHLKILEILLREPLSID  289 (437)
T ss_pred             HHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence            999985        23  89999998554

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.94  E-value=6.7e-26  Score=218.85  Aligned_cols=163  Identities=19%  Similarity=0.205  Sum_probs=141.9

Q ss_pred             HHhhccCCCChHHHHHHHcCC--HHHHHHHHhcCCCcccccCCCCCcHHHHH----------------------------
Q 046832           13 LVKLKALRKGNPLHVASAYGH--VDFVKEIINVRPDLAHEVNQDGFSPMHIA----------------------------   62 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~--~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A----------------------------   62 (328)
                      +++.+|..|.||||+|++.|+  .++++.|++.|+++ +.+|..|+||||+|                            
T Consensus       204 DVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~  282 (764)
T PHA02716        204 NVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIP  282 (764)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccch
Confidence            467889999999999999995  59999999999998 88999999999975                            


Q ss_pred             ---------HHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHH--cCcHHHHHHHHHhCCcccccccCCCCCHHHHHH
Q 046832           63 ---------SSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAI--KGKVHVLSEMLSACPECIEDVTIQHDTALHLAI  131 (328)
Q Consensus        63 ---------a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~--~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~  131 (328)
                               +..|+.+++++|+++|+++ +.+|.+|+||||+|+.  .++.+++++|++.|++ ++.+|..|+||||+|+
T Consensus       283 ~~L~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD-IN~kD~~G~TPLH~A~  360 (764)
T PHA02716        283 MILHSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND-LNEPDNIGNTVLHTYL  360 (764)
T ss_pred             hhhHHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC-CccCCCCCCCHHHHHH
Confidence                     4558889999999999998 8999999999999865  4689999999999988 8999999999999987


Q ss_pred             H--------------cCChhhHHHHHHhhhcCccccccccccCCCCchhhHHh----hccchh--HHhhcCCC
Q 046832          132 K--------------NNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLAT----RKKQRK--ELLLGHGT  184 (328)
Q Consensus       132 ~--------------~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~----~~~~~~--~~Ll~~ga  184 (328)
                      .              .++.+++++|++      .|++++.+|.+|+||||.++    ..++.+  ++|++.|+
T Consensus       361 ~~lav~~~ld~~~~~~~~~eVVklLL~------~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~  427 (764)
T PHA02716        361 SMLSVVNILDPETDNDIRLDVIQCLIS------LGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKV  427 (764)
T ss_pred             HhhhhhccccccccccChHHHHHHHHH------CCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcc
Confidence            5              368899999998      68899999999999999422    223444  88888775

>PHA03095 ankyrin-like protein; Provisional

Probab=99.93  E-value=6e-26  Score=214.99  Aligned_cols=165  Identities=19%  Similarity=0.302  Sum_probs=143.8

Q ss_pred             HHhhccCCCChHHHHHHHcC---CHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCC-CHHHHHHHHHcCccccccCCCC
Q 046832           13 LVKLKALRKGNPLHVASAYG---HVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIG-HTGVVRELLKVEQKLCHQQGPE   88 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g-~~~iv~~Ll~~~~~~~~~~~~~   88 (328)
                      .++.++..|.||||+|+..|   +.++++.|++.|+++ +.+|..|+||||+|+..| +.+++++|+++|+++ +.+|..
T Consensus        39 ~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi-n~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~i-n~~~~~  116 (471)
T PHA03095         39 DVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV-NAPERCGFTPLHLYLYNATTLDVIKLLIKAGADV-NAKDKV  116 (471)
T ss_pred             CcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCC-CCCCCC
Confidence            35678999999999999999   999999999999998 888999999999999999 599999999999998 999999


Q ss_pred             CCCHHHHHH--HcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcC--ChhhHHHHHHhhhcCccccccccccCCCCc
Q 046832           89 KNTPLHCAA--IKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN--QFEAITVLVNWIRGMKREEIFNMKDEQGNT  164 (328)
Q Consensus        89 g~tpLh~Aa--~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T  164 (328)
                      |.||||+|+  ..++.++++.|++.|++ ++..|..|+||||+|+..+  +.+++++|++      .|++++.+|.+|+|
T Consensus       117 g~tpLh~a~~~~~~~~~iv~~Ll~~gad-~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~------~g~~~~~~d~~g~t  189 (471)
T PHA03095        117 GRTPLHVYLSGFNINPKVIRLLLRKGAD-VNALDLYGMTPLAVLLKSRNANVELLRLLID------AGADVYAVDDRFRS  189 (471)
T ss_pred             CCCHHHHHhhCCcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCCCHHHHHHHHH------cCCCCcccCCCCCC
Confidence            999999999  56789999999999998 8899999999999999876  5789999998      56666667777888


Q ss_pred             hhhHHhhccc--hh--HHhhcCCCCC
Q 046832          165 VLHLATRKKQ--RK--ELLLGHGTYS  186 (328)
Q Consensus       165 ~Lh~A~~~~~--~~--~~Ll~~ga~~  186 (328)
                      |||+|+....  .+  +.|+++|+.+
T Consensus       190 ~Lh~~~~~~~~~~~i~~~Ll~~g~~~  215 (471)
T PHA03095        190 LLHHHLQSFKPRARIVRELIRAGCDP  215 (471)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHcCCCC
Confidence            8887776532  22  6777777743

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.93  E-value=9.6e-26  Score=214.36  Aligned_cols=170  Identities=18%  Similarity=0.192  Sum_probs=139.6

Q ss_pred             HhhccCCCChHHHHHHHcC------CHHHHHHHHhcCCCcccccCCCCCcHHHHHHHC---CCHHHHHHHHHcCcccccc
Q 046832           14 VKLKALRKGNPLHVASAYG------HVDFVKEIINVRPDLAHEVNQDGFSPMHIASSI---GHTGVVRELLKVEQKLCHQ   84 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g------~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~   84 (328)
                      ++.++ .+.||||.|+.++      +.++++.|+++|+++ +.+|.+|.||||.|+..   |+.+++++|+++|+++.+.
T Consensus        63 vn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~  140 (494)
T PHA02989         63 VNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADI-NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDV  140 (494)
T ss_pred             ccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccc
Confidence            44444 5689999888754      468999999999987 88899999999988755   6789999999999987567


Q ss_pred             CCCCCCCHHHHHHHc--CcHHHHHHHHHhCCccccc-ccCCCCCHHHHHHHcC----ChhhHHHHHHhhhcCc-------
Q 046832           85 QGPEKNTPLHCAAIK--GKVHVLSEMLSACPECIED-VTIQHDTALHLAIKNN----QFEAITVLVNWIRGMK-------  150 (328)
Q Consensus        85 ~~~~g~tpLh~Aa~~--g~~~~v~~Ll~~~~~~~~~-~~~~g~t~Lh~A~~~~----~~~~~~~Ll~~~~~~~-------  150 (328)
                      +|..|.||||+|+..  ++.++++.|++.|++ ++. .+..|.||||+|++++    +.+++++|++.|.+.+       
T Consensus       141 ~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gad-i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~  219 (494)
T PHA02989        141 KNSRGYNLLHMYLESFSVKKDVIKILLSFGVN-LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSE  219 (494)
T ss_pred             cCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC-ccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccc
Confidence            888999999998764  588999999999988 555 6778999999987664    8899999998776432       


Q ss_pred             -------------------------cccccccccCCCCchhhHHhhccchh--HHhhcCCCCC
Q 046832          151 -------------------------REEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       151 -------------------------~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~  186 (328)
                                               .++++|.+|.+|+||||+|+..++.+  ++|+++|++.
T Consensus       220 t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadi  282 (494)
T PHA02989        220 SVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDI  282 (494)
T ss_pred             cHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCc
Confidence                                     13457889999999999999999988  9999999943

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=4.9e-26  Score=200.75  Aligned_cols=158  Identities=23%  Similarity=0.314  Sum_probs=144.5

Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHH
Q 046832           17 KALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCA   96 (328)
Q Consensus        17 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A   96 (328)
                      .+-+|-+||..|+..||.|+|+.|++++.++ |.......|||--||.-|+.++||+|+++|+|+ +..|+.|.|.||+|
T Consensus        80 e~IegappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~TNStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa  157 (615)
T KOG0508|consen   80 ETIEGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTRTNSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIA  157 (615)
T ss_pred             cccCCCchhhHHhccCcHHHHHHHHHhcCcc-ccccccCCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEee
Confidence            3567889999999999999999999999887 666777889999999999999999999999999 99999999999999


Q ss_pred             HHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh
Q 046832           97 AIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK  176 (328)
Q Consensus        97 a~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~  176 (328)
                      |.+|+.+++++|++.|++ ++.++..|+|+||.+++.|+.+++++|+.++..+       .+|..|.|||..|+..|+.+
T Consensus       158 ~ykGh~~I~qyLle~gAD-vn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i-------~~d~~GmtPL~~Aa~tG~~~  229 (615)
T KOG0508|consen  158 CYKGHVDIAQYLLEQGAD-VNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKI-------DVDGHGMTPLLLAAVTGHTD  229 (615)
T ss_pred             eccCchHHHHHHHHhCCC-cchhcccCchHHHhhhhcccHHHHHHHHhCCcee-------eecCCCCchHHHHhhhcchH
Confidence            999999999999999999 9999999999999999999999999999865443       26788999999999999998


Q ss_pred             --HHhhcCCC
Q 046832          177 --ELLLGHGT  184 (328)
Q Consensus       177 --~~Ll~~ga  184 (328)
                        +.|+....
T Consensus       230 iVe~L~~~~~  239 (615)
T KOG0508|consen  230 IVERLLQCET  239 (615)
T ss_pred             HHHHHhcCCc
Confidence              78876333

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=2.7e-25  Score=222.41  Aligned_cols=159  Identities=22%  Similarity=0.266  Sum_probs=146.3

Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHH
Q 046832           18 ALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAA   97 (328)
Q Consensus        18 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa   97 (328)
                      +.++.++||.||..|+.++++.|++.|.++ +..|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||.|+
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~  599 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAI  599 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHH
Confidence            345679999999999999999999999998 889999999999999999999999999999998 999999999999999


Q ss_pred             HcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh-
Q 046832           98 IKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK-  176 (328)
Q Consensus        98 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~-  176 (328)
                      ..|+.++++.|++.+.. .  ....|.++||.|+.+|+.++++.|++      .|+++|.+|.+|+||||+|+..|+.+ 
T Consensus       600 ~~g~~~iv~~L~~~~~~-~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~------~Gadin~~d~~G~TpLh~A~~~g~~~i  670 (823)
T PLN03192        600 SAKHHKIFRILYHFASI-S--DPHAAGDLLCTAAKRNDLTAMKELLK------QGLNVDSEDHQGATALQVAMAEDHVDM  670 (823)
T ss_pred             HhCCHHHHHHHHhcCcc-c--CcccCchHHHHHHHhCCHHHHHHHHH------CCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            99999999999987654 2  23567799999999999999999998      68889999999999999999999999 


Q ss_pred             -HHhhcCCCCCC
Q 046832          177 -ELLLGHGTYSS  187 (328)
Q Consensus       177 -~~Ll~~ga~~~  187 (328)
                       ++|+++|++..
T Consensus       671 v~~Ll~~GAdv~  682 (823)
T PLN03192        671 VRLLIMNGADVD  682 (823)
T ss_pred             HHHHHHcCCCCC
Confidence             99999999553

>PHA02917 ankyrin-like protein; Provisional

Probab=99.93  E-value=4.4e-25  Score=213.85  Aligned_cols=161  Identities=16%  Similarity=0.135  Sum_probs=135.4

Q ss_pred             hhccCCCChHHHHHHHc---CCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCC-------------------------
Q 046832           15 KLKALRKGNPLHVASAY---GHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIG-------------------------   66 (328)
Q Consensus        15 ~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g-------------------------   66 (328)
                      +.+|.+|+||||+|+..   |+.++++.|++.|.++ +..|.+|+||||+|+..|                         
T Consensus        26 ~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v-~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~  104 (661)
T PHA02917         26 DTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP-LHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFN  104 (661)
T ss_pred             cccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcc
Confidence            45688999999998665   8899999999999998 788999999999888654                         


Q ss_pred             ----------CHHHHHHHHHcCccccccCCCCCCCHHHHH--HHcCcHHHHHHHHHhCCcccccccC---CC--------
Q 046832           67 ----------HTGVVRELLKVEQKLCHQQGPEKNTPLHCA--AIKGKVHVLSEMLSACPECIEDVTI---QH--------  123 (328)
Q Consensus        67 ----------~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A--a~~g~~~~v~~Ll~~~~~~~~~~~~---~g--------  123 (328)
                                +.+++++|+++|+++ +.+|.+|.||||.+  +..|+.+++++|+++|++ ++..|.   .|        
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gadi-n~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~-vn~~d~~~~~g~~~~~~~~  182 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFDL-SVKCENHRSVIENYVMTDDPVPEIIDLFIENGCS-VLYEDEDDEYGYAYDDYQP  182 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCCC-CccCCCCccHHHHHHHccCCCHHHHHHHHHcCCC-ccccccccccccccccccc
Confidence                      456788888888888 88999999999954  357899999999999987 544332   23        


Q ss_pred             ---CCHHHHHHH-----------cCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccch--h--HHhhcCCCC
Q 046832          124 ---DTALHLAIK-----------NNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQR--K--ELLLGHGTY  185 (328)
Q Consensus       124 ---~t~Lh~A~~-----------~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~--~--~~Ll~~ga~  185 (328)
                         +||||+|+.           +++.+++++|++      .|+++|.+|.+|+||||+|+..++.  +  ++|++ |++
T Consensus       183 ~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~------~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d  255 (661)
T PHA02917        183 RNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLIN------HGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GID  255 (661)
T ss_pred             cccccHHHHHHhhcccccccccccCcHHHHHHHHH------CCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCc
Confidence               599999986           468899999998      7889999999999999999999985  3  78875 663

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=4.1e-26  Score=201.27  Aligned_cols=161  Identities=25%  Similarity=0.369  Sum_probs=145.7

Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHhcCCCcccc--------cCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCC
Q 046832           18 ALRKGNPLHVASAYGHVDFVKEIINVRPDLAHE--------VNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEK   89 (328)
Q Consensus        18 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~--------~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g   89 (328)
                      +.+|.|||-.||++||.++|++|+++.......        ..-+|-+||..|+..||.++||.|+++|+++ +......
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~TN  117 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTRTN  117 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcc-ccccccC
Confidence            457889999999999999999999954221122        2346889999999999999999999999988 7777888


Q ss_pred             CCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHH
Q 046832           90 NTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLA  169 (328)
Q Consensus        90 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A  169 (328)
                      .|||-.||.-|+.+++++|++++++ ++..|..|.|.||+|+..|+.+|+++|++      .|+++|.++..|||+||.+
T Consensus       118 StPLraACfDG~leivKyLvE~gad-~~IanrhGhTcLmIa~ykGh~~I~qyLle------~gADvn~ks~kGNTALH~c  190 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKYLVEHGAD-PEIANRHGHTCLMIACYKGHVDIAQYLLE------QGADVNAKSYKGNTALHDC  190 (615)
T ss_pred             CccHHHHHhcchhHHHHHHHHcCCC-CcccccCCCeeEEeeeccCchHHHHHHHH------hCCCcchhcccCchHHHhh
Confidence            8999999999999999999999999 99999999999999999999999999998      7999999999999999999


Q ss_pred             hhccchh--HHhhcCCCCC
Q 046832          170 TRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       170 ~~~~~~~--~~Ll~~ga~~  186 (328)
                      +..|+.+  ++|+++|+..
T Consensus       191 aEsG~vdivq~Ll~~ga~i  209 (615)
T KOG0508|consen  191 AESGSVDIVQLLLKHGAKI  209 (615)
T ss_pred             hhcccHHHHHHHHhCCcee
Confidence            9999999  9999998843

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=1.8e-25  Score=208.69  Aligned_cols=155  Identities=25%  Similarity=0.359  Sum_probs=144.6

Q ss_pred             hHHHHHHHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHH-cCccccccC
Q 046832            7 IKAFIFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK-VEQKLCHQQ   85 (328)
Q Consensus         7 ~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~-~~~~~~~~~   85 (328)
                      .+...++++..|.+|.||||+||++|+.++++.|+..|.++ +.++.++.||||.||..|+.+.|+.||+ .|..+.+..
T Consensus       259 ~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~  337 (929)
T KOG0510|consen  259 MQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNES  337 (929)
T ss_pred             HHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc-cccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccc
Confidence            34566788999999999999999999999999999999999 9999999999999999999999999999 777777889


Q ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHhCCcccc--cccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCC
Q 046832           86 GPEKNTPLHCAAIKGKVHVLSEMLSACPECIE--DVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGN  163 (328)
Q Consensus        86 ~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~--~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~  163 (328)
                      |-.|.||||+|+++||..+++.|+++|+...+  ..|.+|.||||.|+++|+..++++|+.      .|+++..+|++|.
T Consensus       338 D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~------~Ga~I~~~n~~g~  411 (929)
T KOG0510|consen  338 DLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLIS------HGADIGVKNKKGK  411 (929)
T ss_pred             cccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHH------cCCceeecccccc
Confidence            99999999999999999999999999998654  559999999999999999999999998      7888999999999


Q ss_pred             chhhH
Q 046832          164 TVLHL  168 (328)
Q Consensus       164 T~Lh~  168 (328)
                      +++++
T Consensus       412 SA~~~  416 (929)
T KOG0510|consen  412 SAFDT  416 (929)
T ss_pred             ccccc
Confidence            99995

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.92  E-value=8.1e-25  Score=215.84  Aligned_cols=164  Identities=21%  Similarity=0.261  Sum_probs=148.8

Q ss_pred             HhhccCCCChHHHHHHHcCCH-HHHHHHHhcCCCcccccCCCCCcHHHHHHHCC-CHHHHHHHHHcCccccccCCCCCCC
Q 046832           14 VKLKALRKGNPLHVASAYGHV-DFVKEIINVRPDLAHEVNQDGFSPMHIASSIG-HTGVVRELLKVEQKLCHQQGPEKNT   91 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g-~~~iv~~Ll~~~~~~~~~~~~~g~t   91 (328)
                      ++.+|..|.||||+|+..|+. ++++.|++.+.++ +.+|.+|.||||+|+..| +.++++.|+..|+++ +.+|..|.|
T Consensus       266 vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi-n~~d~~g~T  343 (682)
T PHA02876        266 VNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAKNGYDTENIRTLIMLGADV-NAADRLYIT  343 (682)
T ss_pred             CCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC-CCcccCCCc
Confidence            456788999999999999996 6899999999987 889999999999999999 599999999999998 899999999


Q ss_pred             HHHHHHHcC-cHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHh
Q 046832           92 PLHCAAIKG-KVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLAT  170 (328)
Q Consensus        92 pLh~Aa~~g-~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~  170 (328)
                      |||+|+..+ +.++++.|++.+.+ ++.+|..|+||||+|+..|+.+++++|++      .|++++..|.+|.||||+|+
T Consensus       344 pLh~A~~~~~~~~iv~lLl~~gad-in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~------~gad~~~~~~~g~T~Lh~A~  416 (682)
T PHA02876        344 PLHQASTLDRNKDIVITLLELGAN-VNARDYCDKTPIHYAAVRNNVVIINTLLD------YGADIEALSQKIGTALHFAL  416 (682)
T ss_pred             HHHHHHHhCCcHHHHHHHHHcCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCccccCCCCCchHHHHH
Confidence            999999864 68899999999888 89999999999999999999999999998      67888999999999999999


Q ss_pred             hccchh---HHhhcCCCCC
Q 046832          171 RKKQRK---ELLLGHGTYS  186 (328)
Q Consensus       171 ~~~~~~---~~Ll~~ga~~  186 (328)
                      ..++..   ++|+++|+..
T Consensus       417 ~~~~~~~~vk~Ll~~gadi  435 (682)
T PHA02876        417 CGTNPYMSVKTLIDRGANV  435 (682)
T ss_pred             HcCCHHHHHHHHHhCCCCC
Confidence            876654   8999999843

>PHA02741 hypothetical protein; Provisional

Probab=99.92  E-value=4.5e-24  Score=174.07  Aligned_cols=144  Identities=17%  Similarity=0.255  Sum_probs=126.2

Q ss_pred             CchhhhhHHHHHHHhhccCCCChHHHHHHHcCCHHHHHHHHhc------CCCcccccCCCCCcHHHHHHHCCC----HHH
Q 046832            1 MKKETAIKAFIFLVKLKALRKGNPLHVASAYGHVDFVKEIINV------RPDLAHEVNQDGFSPMHIASSIGH----TGV   70 (328)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~------~~~~~~~~d~~g~tpLh~Aa~~g~----~~i   70 (328)
                      |.++-...-...+++.+|..|+||||+|++.|+.++++.|++.      +.++ +.+|..|+||||+|+..|+    .++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~i   79 (169)
T PHA02741          1 MESPHFMTCLEEMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEI   79 (169)
T ss_pred             CCchhHHHHHHHHhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHH
Confidence            4455555556678899999999999999999999999998643      3444 7889999999999999999    589


Q ss_pred             HHHHHHcCccccccCCC-CCCCHHHHHHHcCcHHHHHHHHHh-CCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhh
Q 046832           71 VRELLKVEQKLCHQQGP-EKNTPLHCAAIKGKVHVLSEMLSA-CPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIR  147 (328)
Q Consensus        71 v~~Ll~~~~~~~~~~~~-~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~  147 (328)
                      +++|++.|+++ +.++. +|.||||+|+..++.+++++|++. +.+ ++..|..|+||||+|+..++.+++++|+++++
T Consensus        80 i~~Ll~~gadi-n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~-~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         80 IDHLIELGADI-NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID-LHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             HHHHHHcCCCC-CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999999998 77775 899999999999999999999985 665 88899999999999999999999999998654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=1.6e-23  Score=170.11  Aligned_cols=143  Identities=16%  Similarity=0.151  Sum_probs=123.3

Q ss_pred             HHhhccCCCChHHHHHHHcCCH----HHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHH---HHHHHHcCccccccC
Q 046832           13 LVKLKALRKGNPLHVASAYGHV----DFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGV---VRELLKVEQKLCHQQ   85 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~i---v~~Ll~~~~~~~~~~   85 (328)
                      ..+..+.++.++||.||+.|+.    +++++|.+.+..+ +..|.+|+||||+|+..|+.+.   +++|+++|+++ +.+
T Consensus        12 ~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~   89 (166)
T PHA02743         12 GAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-NAR   89 (166)
T ss_pred             HHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCC
Confidence            3455677889999999999998    5666777777766 7889999999999999988654   89999999998 778


Q ss_pred             C-CCCCCHHHHHHHcCcHHHHHHHHH-hCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCC
Q 046832           86 G-PEKNTPLHCAAIKGKVHVLSEMLS-ACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGN  163 (328)
Q Consensus        86 ~-~~g~tpLh~Aa~~g~~~~v~~Ll~-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~  163 (328)
                      | ..|.||||+|+..|+.+++++|++ .+.+ ++..|..|+||||+|+..++.+++++|++      .|++++.++..|.
T Consensus        90 d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~------~ga~~~~~~~~~~  162 (166)
T PHA02743         90 ELGTGNTLLHIAASTKNYELAEWLCRQLGVN-LGAINYQHETAYHIAYKMRDRRMMEILRA------NGAVCDDPLSIGL  162 (166)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhccCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCCcccCCc
Confidence            7 589999999999999999999996 5666 78899999999999999999999999998      6777888888775


Q ss_pred             c
Q 046832          164 T  164 (328)
Q Consensus       164 T  164 (328)
                      .
T Consensus       163 ~  163 (166)
T PHA02743        163 S  163 (166)
T ss_pred             c
Confidence            3

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=8.2e-24  Score=181.30  Aligned_cols=161  Identities=20%  Similarity=0.289  Sum_probs=146.1

Q ss_pred             HHHHHHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHC-----CCHHHHHHHHHcCccccc
Q 046832            9 AFIFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSI-----GHTGVVRELLKVEQKLCH   83 (328)
Q Consensus         9 ~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~-----g~~~iv~~Ll~~~~~~~~   83 (328)
                      -+...+|+.|.+|+|+||||+.+++.++|+.|++.|...++.+|+-|+||.++|+..     .+.++|..|.+.|.-- -
T Consensus       256 lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVN-a  334 (452)
T KOG0514|consen  256 LLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVN-A  334 (452)
T ss_pred             HHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcc-h
Confidence            345578999999999999999999999999999999877799999999999999854     4688999999987432 3


Q ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCC
Q 046832           84 QQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGN  163 (328)
Q Consensus        84 ~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~  163 (328)
                      .-...|.|+|++|+.+|+.++|+.||.-+++ ++..|.+|.|+|++|+++||.|++++|+..     .+++....|.+|-
T Consensus       335 KAsQ~gQTALMLAVSHGr~d~vk~LLacgAd-VNiQDdDGSTALMCA~EHGhkEivklLLA~-----p~cd~sLtD~DgS  408 (452)
T KOG0514|consen  335 KASQHGQTALMLAVSHGRVDMVKALLACGAD-VNIQDDDGSTALMCAAEHGHKEIVKLLLAV-----PSCDISLTDVDGS  408 (452)
T ss_pred             hhhhhcchhhhhhhhcCcHHHHHHHHHccCC-CccccCCccHHHhhhhhhChHHHHHHHhcc-----CcccceeecCCCc
Confidence            3345699999999999999999999999998 999999999999999999999999999984     7899999999999


Q ss_pred             chhhHHhhccchh
Q 046832          164 TVLHLATRKKQRK  176 (328)
Q Consensus       164 T~Lh~A~~~~~~~  176 (328)
                      |+|.+|...|+.+
T Consensus       409 TAl~IAleagh~e  421 (452)
T KOG0514|consen  409 TALSIALEAGHRE  421 (452)
T ss_pred             hhhhhHHhcCchH
Confidence            9999999999998

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=2.5e-23  Score=208.34  Aligned_cols=150  Identities=17%  Similarity=0.218  Sum_probs=138.1

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCH
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTP   92 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp   92 (328)
                      +.+.+|.+|+||||+|+..|+.++++.|+++|.++ +.+|.+|+||||+|+..|+.+++++|++.++..   .+..|.++
T Consensus       550 d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~---~~~~~~~~  625 (823)
T PLN03192        550 DPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAISAKHHKIFRILYHFASIS---DPHAAGDL  625 (823)
T ss_pred             CCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHhcCccc---CcccCchH
Confidence            46788999999999999999999999999999988 889999999999999999999999999887654   34567899


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCC-CchhhHHhh
Q 046832           93 LHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQG-NTVLHLATR  171 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G-~T~Lh~A~~  171 (328)
                      ||.|+.+|+.++++.|+++|++ ++..|.+|+||||+|+..|+.+++++|++      .|++++.+|.+| .||++++..
T Consensus       626 L~~Aa~~g~~~~v~~Ll~~Gad-in~~d~~G~TpLh~A~~~g~~~iv~~Ll~------~GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        626 LCTAAKRNDLTAMKELLKQGLN-VDSEDHQGATALQVAMAEDHVDMVRLLIM------NGADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             HHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHHHHHHHHH------cCCCCCCCCCCCCCCHHHHHHH
Confidence            9999999999999999999998 89999999999999999999999999998      688899999998 999998866


Q ss_pred             cc
Q 046832          172 KK  173 (328)
Q Consensus       172 ~~  173 (328)
                      ..
T Consensus       699 ~~  700 (823)
T PLN03192        699 LQ  700 (823)
T ss_pred             HH
Confidence            43

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.89  E-value=2.6e-23  Score=204.86  Aligned_cols=172  Identities=22%  Similarity=0.255  Sum_probs=153.2

Q ss_pred             hhHHHHHHHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccC
Q 046832            6 AIKAFIFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQ   85 (328)
Q Consensus         6 ~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~   85 (328)
                      .+..+..+.+.....|.||||.|+..|+.++++.+++.+... +...+.|.|+||.|...+....++.++++|+.. +.+
T Consensus       459 ~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~-~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v-~~~  536 (1143)
T KOG4177|consen  459 LLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAND-NLDAKKGLTPLHLAADEDTVKVAKILLEHGANV-DLR  536 (1143)
T ss_pred             hHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCcc-CccchhccchhhhhhhhhhHHHHHHHhhcCCce-ehh
Confidence            445555667788888888888888888888888888877555 666778888888888888888888899889888 899


Q ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCch
Q 046832           86 GPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTV  165 (328)
Q Consensus        86 ~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~  165 (328)
                      +.+|.||||.|+..|+.++|++|++++++ ++.+|+.|+||||.|+..|+.+|+++|++      .|+++|..|.+|+||
T Consensus       537 ~~r~~TpLh~A~~~g~v~~VkfLLe~gAd-v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk------~GA~vna~d~~g~Tp  609 (1143)
T KOG4177|consen  537 TGRGYTPLHVAVHYGNVDLVKFLLEHGAD-VNAKDKLGYTPLHQAAQQGHNDIAELLLK------HGASVNAADLDGFTP  609 (1143)
T ss_pred             cccccchHHHHHhcCCchHHHHhhhCCcc-ccccCCCCCChhhHHHHcChHHHHHHHHH------cCCCCCcccccCcch
Confidence            99999999999999999999999999999 88888999999999999999999999998      788999999999999


Q ss_pred             hhHHhhccchh--HHhhcCCCCC
Q 046832          166 LHLATRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       166 Lh~A~~~~~~~--~~Ll~~ga~~  186 (328)
                      ||.|+..|+.+  ++|+..++.+
T Consensus       610 L~iA~~lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  610 LHIAVRLGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             hHHHHHhcccchhhHHHhccCcc
Confidence            99999999999  8888888863

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.89  E-value=2.5e-22  Score=175.78  Aligned_cols=154  Identities=16%  Similarity=0.143  Sum_probs=131.9

Q ss_pred             HhhccCCCChHH-HHHHHcCCHHHHHHHHhcCCCccccc----CCCCCcHHHHHHHCCCHHHHHHHHHcCccccccC-CC
Q 046832           14 VKLKALRKGNPL-HVASAYGHVDFVKEIINVRPDLAHEV----NQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQ-GP   87 (328)
Q Consensus        14 ~~~~~~~g~t~L-h~A~~~g~~~~v~~Ll~~~~~~~~~~----d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~-~~   87 (328)
                      ++.+|..|.|++ |.|++.|+.++++.|+++|+++ +.+    |..|.||||+|+..|+.+++++|+++|+++ +.+ +.
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~  102 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEE  102 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCC
Confidence            677888888755 6666779999999999999998 555    468999999999999999999999999999 665 56


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhh
Q 046832           88 EKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLH  167 (328)
Q Consensus        88 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh  167 (328)
                      .|.||||.|+..|+.++++.|++.|++ ++..|..|+||||+|++.++.+++..+..           +..|..+.+|++
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~~~~~~-----------~~~~~~~~~~~~  170 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLAFMICD-----------NEISNFYKHPKK  170 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHHHHhcC-----------CcccccccChhh
Confidence            899999999999999999999999998 88899999999999999999888766532           235778889999


Q ss_pred             HHhhccchh--HHhhcCCC
Q 046832          168 LATRKKQRK--ELLLGHGT  184 (328)
Q Consensus       168 ~A~~~~~~~--~~Ll~~ga  184 (328)
                      .+.   +.+  ++|++++.
T Consensus       171 ~~~---n~ei~~~Lish~v  186 (300)
T PHA02884        171 ILI---NFDILKILVSHFI  186 (300)
T ss_pred             hhc---cHHHHHHHHHHHH
Confidence            763   344  88888886

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.89  E-value=8.7e-23  Score=158.00  Aligned_cols=145  Identities=23%  Similarity=0.312  Sum_probs=132.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHH
Q 046832           24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVH  103 (328)
Q Consensus        24 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~  103 (328)
                      .+.+|+..+..+.|+.|++..++.++.+|.+|+||||-|+.+||.+|++.|+..|++. +.+...|+||||.||..++.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccchh
Confidence            4678999999999999999999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHhCCcccccccCCCCCHHHHHHHcCCh-hhHHHHHHhhhcCccccccccccCCCCchhhHHhhccch
Q 046832          104 VLSEMLSACPECIEDVTIQHDTALHLAIKNNQF-EAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQR  175 (328)
Q Consensus       104 ~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~-~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~  175 (328)
                      ++..|+++|++ ++.......||||.|+..++. ..+++|+.     +++.....++..+.||+.+|-+-+-.
T Consensus       145 va~~LLqhgaD-VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~-----dryi~pg~~nn~eeta~~iARRT~~s  211 (228)
T KOG0512|consen  145 VAGRLLQHGAD-VNAQTKGLLTPLHLAAGNRNSRDTLELLLH-----DRYIHPGLKNNLEETAFDIARRTSMS  211 (228)
T ss_pred             HHHHHHhccCc-ccccccccchhhHHhhcccchHHHHHHHhh-----ccccChhhhcCccchHHHHHHHhhhh
Confidence            99999999999 898888899999999988775 46677765     46777888999999999999775433

>PHA02795 ankyrin-like protein; Provisional

Probab=99.89  E-value=1.1e-22  Score=184.87  Aligned_cols=150  Identities=15%  Similarity=0.033  Sum_probs=134.5

Q ss_pred             HHHHcCCHHHHHHHHhcCCCccc------ccCCCCCcHHHHHHH--CCCHHHHHHHHHcCccccccCCCCCCCHHHHHHH
Q 046832           27 VASAYGHVDFVKEIINVRPDLAH------EVNQDGFSPMHIASS--IGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAI   98 (328)
Q Consensus        27 ~A~~~g~~~~v~~Ll~~~~~~~~------~~d~~g~tpLh~Aa~--~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~   98 (328)
                      +|+..+..|+++.|+++|.+. +      ..+..++|+||+++.  .|+.+++++|+++|+++ +.+  ++.||+|.|+.
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~-~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~~--~~~t~lh~A~~  158 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYME-DIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YKI--ECLNAYFRGIC  158 (437)
T ss_pred             HHhhcchHHHHHHHHhccccc-chhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CCC--CCCCHHHHHHH
Confidence            899999999999999999886 4      578889999999999  89999999999999998 553  45899999999


Q ss_pred             cCcHHHHHHHHHhCCcccccc-----cCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhcc
Q 046832           99 KGKVHVLSEMLSACPECIEDV-----TIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKK  173 (328)
Q Consensus        99 ~g~~~~v~~Ll~~~~~~~~~~-----~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~  173 (328)
                      .|+.+++++|+++|++..+..     +..+.|++|.|...++.+++++|++      .|+++|.+|.+|+||||+|+..|
T Consensus       159 ~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs------~GADIN~kD~~G~TpLh~Aa~~g  232 (437)
T PHA02795        159 KKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIP------YIEDINQLDAGGRTLLYRAIYAG  232 (437)
T ss_pred             cCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHh------CcCCcCcCCCCCCCHHHHHHHcC
Confidence            999999999999997533333     2347899999999999999999998      68889999999999999999999


Q ss_pred             chh--HHhhcCCCCC
Q 046832          174 QRK--ELLLGHGTYS  186 (328)
Q Consensus       174 ~~~--~~Ll~~ga~~  186 (328)
                      +.+  ++|+++|+..
T Consensus       233 ~~eiVelLL~~GAdI  247 (437)
T PHA02795        233 YIDLVSWLLENGANV  247 (437)
T ss_pred             CHHHHHHHHHCCCCC
Confidence            999  9999999944

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.88  E-value=7e-23  Score=164.37  Aligned_cols=150  Identities=22%  Similarity=0.304  Sum_probs=132.8

Q ss_pred             hccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHH
Q 046832           16 LKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHC   95 (328)
Q Consensus        16 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~   95 (328)
                      ..+.-+.+|+.+++...+.+.+..+.+   +..|..|+.|.|||.||+..|++++|++||+.|+++ +...+...++|.+
T Consensus       124 evs~~p~s~~slsVhql~L~~~~~~~~---n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsL  199 (296)
T KOG0502|consen  124 EVSLMPWSPLSLSVHQLHLDVVDLLVN---NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSL  199 (296)
T ss_pred             ccccccCChhhHHHHHHHHHHHHHHhh---ccccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhH
Confidence            345566777888887777766665554   344778999999999999999999999999999998 8889999999999


Q ss_pred             HHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccch
Q 046832           96 AAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQR  175 (328)
Q Consensus        96 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~  175 (328)
                      |+..|..++|+.|+.++++ ++..|.+|.|||-+|++-++.+|++.|++      .|++++..|..|++++.+|+..|+.
T Consensus       200 At~ggytdiV~lLL~r~vd-VNvyDwNGgTpLlyAvrgnhvkcve~Ll~------sGAd~t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  200 ATRGGYTDIVELLLTREVD-VNVYDWNGGTPLLYAVRGNHVKCVESLLN------SGADVTQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             HhcCChHHHHHHHHhcCCC-cceeccCCCceeeeeecCChHHHHHHHHh------cCCCcccccccCCcHHHHHHHhhhH
Confidence            9999999999999999998 89999999999999999999999999998      7899999999999999999999877


Q ss_pred             h
Q 046832          176 K  176 (328)
Q Consensus       176 ~  176 (328)
                      .
T Consensus       273 ~  273 (296)
T KOG0502|consen  273 I  273 (296)
T ss_pred             H
Confidence            6

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=2.5e-22  Score=163.78  Aligned_cols=129  Identities=18%  Similarity=0.226  Sum_probs=114.2

Q ss_pred             cccCCCCCcHHHHHHHCCCHHHHHHHHHc------CccccccCCCCCCCHHHHHHHcCc----HHHHHHHHHhCCccccc
Q 046832           49 HEVNQDGFSPMHIASSIGHTGVVRELLKV------EQKLCHQQGPEKNTPLHCAAIKGK----VHVLSEMLSACPECIED  118 (328)
Q Consensus        49 ~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~------~~~~~~~~~~~g~tpLh~Aa~~g~----~~~v~~Ll~~~~~~~~~  118 (328)
                      +.+|..|.||||+|++.|+.++++.|+..      ++++ +.+|..|.||||+|+..|+    .++++.|++.+++ ++.
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad-in~   92 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD-INA   92 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-CCC
Confidence            45678999999999999999999998643      4565 8899999999999999999    5899999999988 787


Q ss_pred             ccC-CCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcCCC
Q 046832          119 VTI-QHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGT  184 (328)
Q Consensus       119 ~~~-~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga  184 (328)
                      ++. .|+||||+|+..++.+++++|++.     .+.+++.+|.+|+||||+|+..++.+  ++|++.++
T Consensus        93 ~~~~~g~TpLh~A~~~~~~~iv~~Ll~~-----~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         93 QEMLEGDTALHLAAHRRDHDLAEWLCCQ-----PGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             CCcCCCCCHHHHHHHcCCHHHHHHHHhC-----CCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            775 899999999999999999999962     47889999999999999999999888  88887665

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=2e-22  Score=161.92  Aligned_cols=131  Identities=18%  Similarity=0.163  Sum_probs=107.8

Q ss_pred             HHHhhccCCCChHHHHHHHcCCHHHHHHHHhcC------CCcccccCCCCCcHHHHHHHCCCH---HHHHHHHHcCcccc
Q 046832           12 FLVKLKALRKGNPLHVASAYGHVDFVKEIINVR------PDLAHEVNQDGFSPMHIASSIGHT---GVVRELLKVEQKLC   82 (328)
Q Consensus        12 ~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~------~~~~~~~d~~g~tpLh~Aa~~g~~---~iv~~Ll~~~~~~~   82 (328)
                      ...+.+|.+|.||||+|++.|+.+  +.+...+      +......|.+|+||||+|+..|+.   +++++|++.|+++ 
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-   84 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-   84 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-
Confidence            345778999999999999999843  2222211      223356788999999999999987   4688999999998 


Q ss_pred             ccCC-CCCCCHHHHHHHcCcHHHHHHHHHh-CCcccccccCCCCCHHHHHHHcCChhhHHHHHHhh
Q 046832           83 HQQG-PEKNTPLHCAAIKGKVHVLSEMLSA-CPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWI  146 (328)
Q Consensus        83 ~~~~-~~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~  146 (328)
                      +.++ .+|.||||+|+..|+.+++++|++. +.+ ++..|..|+||||+|+..|+.+++++|++.+
T Consensus        85 n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d-~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g  149 (154)
T PHA02736         85 NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN-MEILNYAFKTPYYVACERHDAKMMNILRAKG  149 (154)
T ss_pred             cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            7777 5899999999999999999999985 555 8889999999999999999999999999843

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=5.1e-22  Score=161.29  Aligned_cols=132  Identities=17%  Similarity=0.218  Sum_probs=116.3

Q ss_pred             cccCCCCCcHHHHHHHCCCH----HHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHH---HHHHHHhCCccccccc-
Q 046832           49 HEVNQDGFSPMHIASSIGHT----GVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHV---LSEMLSACPECIEDVT-  120 (328)
Q Consensus        49 ~~~d~~g~tpLh~Aa~~g~~----~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~---v~~Ll~~~~~~~~~~~-  120 (328)
                      +..+.++.++||.||+.|+.    +++++|.+.++.+ +.+|.+|+||||+|+..|+.+.   +++|++.+++ ++.+| 
T Consensus        14 ~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad-in~~d~   91 (166)
T PHA02743         14 VEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD-INAREL   91 (166)
T ss_pred             hhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC-CCCCCC
Confidence            45677888999999999998    6667788888887 8899999999999999998654   8899999987 78887 


Q ss_pred             CCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcCCCCCC
Q 046832          121 IQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTYSS  187 (328)
Q Consensus       121 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~~  187 (328)
                      ..|+||||+|+.+++.+++++|++     ..+++++.+|.+|+||||+|+..++.+  ++|+++|++..
T Consensus        92 ~~g~TpLh~A~~~g~~~iv~~Ll~-----~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~  155 (166)
T PHA02743         92 GTGNTLLHIAASTKNYELAEWLCR-----QLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCD  155 (166)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHh-----ccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            589999999999999999999995     257889999999999999999999888  99999998543

>PHA02730 ankyrin-like protein; Provisional

Probab=99.87  E-value=1.3e-21  Score=185.97  Aligned_cols=133  Identities=14%  Similarity=0.069  Sum_probs=109.8

Q ss_pred             hhccCCCChHHHHHHHcC---CHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCC--CHHHHHHHHHcCccc-cccCCCC
Q 046832           15 KLKALRKGNPLHVASAYG---HVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIG--HTGVVRELLKVEQKL-CHQQGPE   88 (328)
Q Consensus        15 ~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g--~~~iv~~Ll~~~~~~-~~~~~~~   88 (328)
                      +.+|.+|+||||+|+..|   +.|+++.|+++|+++ +.+|.+|+||||+|+..|  +.+++++|++.|++. .+..+..
T Consensus        35 ~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdi-n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~  113 (672)
T PHA02730         35 KHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVER-LCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNI  113 (672)
T ss_pred             hhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCC-cccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccccccc
Confidence            477889999999999997   599999999999998 889999999999999977  799999999996533 1556777


Q ss_pred             CCCHHHHHHH--cCcHHHHHHHHHhCCccccccc-----CCCCCHHHHHHHcCChhhHHHHHHhhhc
Q 046832           89 KNTPLHCAAI--KGKVHVLSEMLSACPECIEDVT-----IQHDTALHLAIKNNQFEAITVLVNWIRG  148 (328)
Q Consensus        89 g~tpLh~Aa~--~g~~~~v~~Ll~~~~~~~~~~~-----~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~  148 (328)
                      +.+|||.++.  +++.+++++|++.+...++...     ..|.+|++++...++.|++++|++.|++
T Consensus       114 ~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~  180 (672)
T PHA02730        114 NDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECY  180 (672)
T ss_pred             CCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCc
Confidence            8889998888  8889999999974432244332     3788999999999999999999985443

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.87  E-value=2.6e-22  Score=197.90  Aligned_cols=166  Identities=31%  Similarity=0.407  Sum_probs=134.2

Q ss_pred             HHhhccCCCChHHHHHHHcC-CHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCC
Q 046832           13 LVKLKALRKGNPLHVASAYG-HVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNT   91 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~t   91 (328)
                      ..+.++..|.||+|+|+..| ..+....+++.+.+. +..-.+|.||||+|+..|+.++++.|++.++.. +.....|.+
T Consensus       432 ~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~-n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~-~~~~~~~l~  509 (1143)
T KOG4177|consen  432 SPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADP-NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAND-NLDAKKGLT  509 (1143)
T ss_pred             ChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCc-chhccccCcchhhhhccCCchHHHHhhhcCCcc-Cccchhccc
Confidence            34566677777777777777 666666666666665 666677777777777777777777777777555 556666777


Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhh
Q 046832           92 PLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATR  171 (328)
Q Consensus        92 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~  171 (328)
                      ++|.|...+....++.+++++.. .+.++..|.||||.|+.+|+.++|++|++      .|++++.+|+.|+||||.|+.
T Consensus       510 ~lhla~~~~~v~~~~~l~~~ga~-v~~~~~r~~TpLh~A~~~g~v~~VkfLLe------~gAdv~ak~~~G~TPLH~Aa~  582 (1143)
T KOG4177|consen  510 PLHLAADEDTVKVAKILLEHGAN-VDLRTGRGYTPLHVAVHYGNVDLVKFLLE------HGADVNAKDKLGYTPLHQAAQ  582 (1143)
T ss_pred             hhhhhhhhhhHHHHHHHhhcCCc-eehhcccccchHHHHHhcCCchHHHHhhh------CCccccccCCCCCChhhHHHH
Confidence            77777777777777777777777 78888999999999999999999999998      789999999999999999999


Q ss_pred             ccchh--HHhhcCCCCCC
Q 046832          172 KKQRK--ELLLGHGTYSS  187 (328)
Q Consensus       172 ~~~~~--~~Ll~~ga~~~  187 (328)
                      .|+.+  ++|+++|+..+
T Consensus       583 ~G~~~i~~LLlk~GA~vn  600 (1143)
T KOG4177|consen  583 QGHNDIAELLLKHGASVN  600 (1143)
T ss_pred             cChHHHHHHHHHcCCCCC
Confidence            99888  99999999654

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.87  E-value=4.2e-22  Score=159.91  Aligned_cols=147  Identities=20%  Similarity=0.186  Sum_probs=137.2

Q ss_pred             HHHHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCC
Q 046832           11 IFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN   90 (328)
Q Consensus        11 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~   90 (328)
                      ...+|..|+.|.|||.+|++.|+++.|++|++.|++. ....+...|+|.+|++.|..++|++||+++.++ +.-|.+|.
T Consensus       150 ~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~lLL~r~vdV-NvyDwNGg  227 (296)
T KOG0502|consen  150 NNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYTDIVELLLTREVDV-NVYDWNGG  227 (296)
T ss_pred             hccccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCc-ceeccCCC
Confidence            3457889999999999999999999999999999998 778888899999999999999999999999999 99999999


Q ss_pred             CHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhh
Q 046832           91 TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLH  167 (328)
Q Consensus        91 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh  167 (328)
                      |||-+|++.|+.++++.|+..|++ +...+..|.+++..|+..|+. +++..++      ...+.+-+|..-+||+|
T Consensus       228 TpLlyAvrgnhvkcve~Ll~sGAd-~t~e~dsGy~~mdlAValGyr-~Vqqvie------~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  228 TPLLYAVRGNHVKCVESLLNSGAD-VTQEDDSGYWIMDLAVALGYR-IVQQVIE------KHALKLCQDSEKRTPLH  296 (296)
T ss_pred             ceeeeeecCChHHHHHHHHhcCCC-cccccccCCcHHHHHHHhhhH-HHHHHHH------HHHHHHhhcccCCCCCC
Confidence            999999999999999999999999 889999999999999999987 8888887      56777889999999987

>PHA02917 ankyrin-like protein; Provisional

Probab=99.87  E-value=2.1e-21  Score=188.28  Aligned_cols=157  Identities=15%  Similarity=0.065  Sum_probs=124.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHH--HCCCHHHHHHHHHcCccccccCC---CCC--------
Q 046832           23 NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIAS--SIGHTGVVRELLKVEQKLCHQQG---PEK--------   89 (328)
Q Consensus        23 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa--~~g~~~iv~~Ll~~~~~~~~~~~---~~g--------   89 (328)
                      +++|.|+..|+.|++++|+++|.++ +..|.+|+||||.|+  ..|+.+++++|+++|+++ +.+|   ..|        
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gadi-n~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n~~d~~~~~g~~~~~~~~  182 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFDL-SVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV-LYEDEDDEYGYAYDDYQP  182 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCCC-CccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc-cccccccccccccccccc
Confidence            3444455556778888899999888 888999999999654  578999999999999998 4443   234        


Q ss_pred             ---CCHHHHHHH-----------cCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCh--hhHHHHHHhhhcCcccc
Q 046832           90 ---NTPLHCAAI-----------KGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQF--EAITVLVNWIRGMKREE  153 (328)
Q Consensus        90 ---~tpLh~Aa~-----------~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~--~~~~~Ll~~~~~~~~~~  153 (328)
                         .||||+|+.           .++.+++++|++.|++ ++..|.+|+||||+|+++|+.  |++++|++ +.+.  ..
T Consensus       183 ~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad-vn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~--~~  258 (661)
T PHA02917        183 RNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK-PSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDN--TA  258 (661)
T ss_pred             cccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC-cccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcc--cc
Confidence               599999986           4689999999999998 899999999999999999986  79999975 2221  11


Q ss_pred             ccccccCCCCchhhHHhhcc---------chh--HHhhcCCCC
Q 046832          154 IFNMKDEQGNTVLHLATRKK---------QRK--ELLLGHGTY  185 (328)
Q Consensus       154 ~~~~~d~~G~T~Lh~A~~~~---------~~~--~~Ll~~ga~  185 (328)
                      ..+..|..|.||+|+|+..+         +.+  ++|+++|+.
T Consensus       259 ~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~  301 (661)
T PHA02917        259 YSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP  301 (661)
T ss_pred             cccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC
Confidence            22357788999999998421         333  899999975

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.86  E-value=7.8e-22  Score=158.54  Aligned_cols=131  Identities=18%  Similarity=0.181  Sum_probs=108.6

Q ss_pred             ccccCCCCCcHHHHHHHCCCHHHHHHHHHcCc------cccccCCCCCCCHHHHHHHcCcH---HHHHHHHHhCCccccc
Q 046832           48 AHEVNQDGFSPMHIASSIGHTGVVRELLKVEQ------KLCHQQGPEKNTPLHCAAIKGKV---HVLSEMLSACPECIED  118 (328)
Q Consensus        48 ~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~------~~~~~~~~~g~tpLh~Aa~~g~~---~~v~~Ll~~~~~~~~~  118 (328)
                      .+..|.+|.||||+|+..|+.  +..+...+.      .....+|.+|.||||+|+..|+.   ++++.|++.+++ ++.
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad-in~   86 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD-ING   86 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC-ccc
Confidence            366788999999999999984  333332221      12245789999999999999987   468899999987 777


Q ss_pred             cc-CCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcCCCCC
Q 046832          119 VT-IQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       119 ~~-~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~  186 (328)
                      ++ ..|+||||+|++.++.+++++|++.     .+.+++.+|..|+||||+|+..++.+  ++|+++|++.
T Consensus        87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~-----~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         87 KERVFGNTPLHIAVYTQNYELATWLCNQ-----PGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhC-----CCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            77 5899999999999999999999962     47889999999999999999999888  8999999843

>PHA02730 ankyrin-like protein; Provisional

Probab=99.86  E-value=3.6e-21  Score=182.99  Aligned_cols=166  Identities=16%  Similarity=0.209  Sum_probs=133.7

Q ss_pred             HHhhccCCCChHHHH--HHHcCCHHHHHHHHh--------------------------------cCCCcccc--------
Q 046832           13 LVKLKALRKGNPLHV--ASAYGHVDFVKEIIN--------------------------------VRPDLAHE--------   50 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~--A~~~g~~~~v~~Ll~--------------------------------~~~~~~~~--------   50 (328)
                      .++.+|.+|+||||+  |...|+.|+++.|++                                .+.|. ..        
T Consensus       227 dIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~~~~~~~~  305 (672)
T PHA02730        227 SIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDM-EIVNLLIEGR  305 (672)
T ss_pred             CCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcch-HHHHHHhhcc
Confidence            468899999999995  556788999999999                                45444 22        


Q ss_pred             ------------cCCCCCc---------------------HHHHHHHCC---CHHHHHHHHHcCccccccCCCCCCCHHH
Q 046832           51 ------------VNQDGFS---------------------PMHIASSIG---HTGVVRELLKVEQKLCHQQGPEKNTPLH   94 (328)
Q Consensus        51 ------------~d~~g~t---------------------pLh~Aa~~g---~~~iv~~Ll~~~~~~~~~~~~~g~tpLh   94 (328)
                                  .|..|.+                     .||.-.+.|   +.+++++|+++|+++ +.+ ..|.||||
T Consensus       306 ~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdI-N~k-~~G~TpLH  383 (672)
T PHA02730        306 HTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATM-DKT-TDNNYPLH  383 (672)
T ss_pred             CcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCC-CcC-CCCCcHHH
Confidence                        4556655                     677777755   589999999999998 654 78999999


Q ss_pred             HHHHcCc----HHHHHHHHHhCCc-ccccccCCCCCHHHH---HHHcC---------ChhhHHHHHHhhhcCcccccccc
Q 046832           95 CAAIKGK----VHVLSEMLSACPE-CIEDVTIQHDTALHL---AIKNN---------QFEAITVLVNWIRGMKREEIFNM  157 (328)
Q Consensus        95 ~Aa~~g~----~~~v~~Ll~~~~~-~~~~~~~~g~t~Lh~---A~~~~---------~~~~~~~Ll~~~~~~~~~~~~~~  157 (328)
                      +|+..++    .++++.|+++|++ .++..|..|+||||.   |...+         ..+++++|++      .|+++|.
T Consensus       384 ~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs------~GADINa  457 (672)
T PHA02730        384 DYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSK------YMDDIDM  457 (672)
T ss_pred             HHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHh------cccchhc
Confidence            9998875    8999999999874 478888999999984   33332         2256899997      7888999


Q ss_pred             ccCCCCchhhHHhhccchh--HHhhcCCCCCC
Q 046832          158 KDEQGNTVLHLATRKKQRK--ELLLGHGTYSS  187 (328)
Q Consensus       158 ~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~~  187 (328)
                      +|..|+||||+|+..++.+  ++|+++|+..+
T Consensus       458 kD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN  489 (672)
T PHA02730        458 IDNENKTLLYYAVDVNNIQFARRLLEYGASVN  489 (672)
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCC
Confidence            9999999999999998887  99999999543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=2.2e-21  Score=174.38  Aligned_cols=66  Identities=23%  Similarity=0.400  Sum_probs=63.0

Q ss_pred             hhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccc
Q 046832           15 KLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL   81 (328)
Q Consensus        15 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~   81 (328)
                      +..|.+|.|+||-+|...+.+||++|++++.++ +..|..||||||.|+..||..++++|+++|++.
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~~i~~~li~~gA~~  132 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYLNIVEYLIQHGANL  132 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccHHHHHHHHHhhhhh
Confidence            678999999999999999999999999999998 999999999999999999999999999998876

>PHA02792 ankyrin-like protein; Provisional

Probab=99.84  E-value=2.3e-20  Score=175.83  Aligned_cols=163  Identities=9%  Similarity=0.034  Sum_probs=135.8

Q ss_pred             HHhhccCCCChHHHHHHHcC-------CHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCC--CHHHHHHHHHc------
Q 046832           13 LVKLKALRKGNPLHVASAYG-------HVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIG--HTGVVRELLKV------   77 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g-------~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g--~~~iv~~Ll~~------   77 (328)
                      .++.+|..|+||||+|+..+       +.|+++.|+++|.++ +..|..|.||||+|+...  +.|+++.|++.      
T Consensus       167 ~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~  245 (631)
T PHA02792        167 TTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNE  245 (631)
T ss_pred             ccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHHHhccccccc
Confidence            45788999999999999999       899999999999998 888999999999999988  66777766553      


Q ss_pred             --------------------------------------------------------------------------------
Q 046832           78 --------------------------------------------------------------------------------   77 (328)
Q Consensus        78 --------------------------------------------------------------------------------   77 (328)
                                                                                                      
T Consensus       246 ~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK  325 (631)
T PHA02792        246 LMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIK  325 (631)
T ss_pred             hHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHH
Confidence                                                                                            


Q ss_pred             -----CccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCC--CCHHHHHHHcCChh---hHHHHHHhhh
Q 046832           78 -----EQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH--DTALHLAIKNNQFE---AITVLVNWIR  147 (328)
Q Consensus        78 -----~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g--~t~Lh~A~~~~~~~---~~~~Ll~~~~  147 (328)
                           |++. .  ...+..+++.|+..|+.++++.|+++|++ ++..|.+|  .||||+|......+   ++++|++   
T Consensus       326 ~LId~Ga~~-~--r~~~~n~~~~Aa~~gn~eIVelLIs~GAD-IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs---  398 (631)
T PHA02792        326 CMIDEGATL-Y--RFKHINKYFQKFDNRDPKVVEYILKNGNV-VVEDDDNIINIMPLFPTLSIHESDVLSILKLCKP---  398 (631)
T ss_pred             HHHHCCCcc-c--cCCcchHHHHHHHcCCHHHHHHHHHcCCc-hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh---
Confidence                 2211 0  11345678899999999999999999998 77777765  69999988766654   5777777   


Q ss_pred             cCccccccccccCCCCchhhHHhhccchh--HHhhcCCCCC
Q 046832          148 GMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       148 ~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~  186 (328)
                         .|+++|.+|.+|+||||+|+..++.+  ++|+++|+..
T Consensus       399 ---~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADI  436 (631)
T PHA02792        399 ---YIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADI  436 (631)
T ss_pred             ---cCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCC
Confidence               68889999999999999999999888  9999999943

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.84  E-value=7.4e-21  Score=189.33  Aligned_cols=149  Identities=17%  Similarity=0.142  Sum_probs=120.1

Q ss_pred             HHhhccCCCChHHH-HHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCC---CHHHHHHHHHcCccc-------
Q 046832           13 LVKLKALRKGNPLH-VASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIG---HTGVVRELLKVEQKL-------   81 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh-~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g---~~~iv~~Ll~~~~~~-------   81 (328)
                      .+|..|..|+|||| .|+..++.++++.|++.+.     .+..|.||||.|+..+   ..++++.+...+.+.       
T Consensus        44 ~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~  118 (743)
T TIGR00870        44 NINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELAN  118 (743)
T ss_pred             CCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhc
Confidence            35667889999999 8888999999999999876     5778999999998732   223344444444321       


Q ss_pred             --cccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCccccccc--------------CCCCCHHHHHHHcCChhhHHHHHHh
Q 046832           82 --CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVT--------------IQHDTALHLAIKNNQFEAITVLVNW  145 (328)
Q Consensus        82 --~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~--------------~~g~t~Lh~A~~~~~~~~~~~Ll~~  145 (328)
                        ....+..|.||||+|+.+|+.++++.|+++|++ ++..+              ..|+||||.|+..++.+++++|++ 
T Consensus       119 ~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAd-v~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~-  196 (743)
T TIGR00870       119 DQYTSEFTPGITALHLAAHRQNYEIVKLLLERGAS-VPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSE-  196 (743)
T ss_pred             cccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCC-CCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhc-
Confidence              012235699999999999999999999999987 44332              368999999999999999999998 


Q ss_pred             hhcCccccccccccCCCCchhhHHhhcc
Q 046832          146 IRGMKREEIFNMKDEQGNTVLHLATRKK  173 (328)
Q Consensus       146 ~~~~~~~~~~~~~d~~G~T~Lh~A~~~~  173 (328)
                           .|+++|.+|..|+||||+|+..+
T Consensus       197 -----~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       197 -----DPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             -----CCcchhhHhhhhhHHHHHHHhhh
Confidence                 67789999999999999999986

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.84  E-value=1.1e-19  Score=171.02  Aligned_cols=165  Identities=20%  Similarity=0.269  Sum_probs=141.5

Q ss_pred             HHhhccCCCChHHHHHHHc---CCHHHHHHHHhcCCCccccc----CCCCCcHHHHHHHCCCHHHHHHHHHcCcccc---
Q 046832           13 LVKLKALRKGNPLHVASAY---GHVDFVKEIINVRPDLAHEV----NQDGFSPMHIASSIGHTGVVRELLKVEQKLC---   82 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~----d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~---   82 (328)
                      .++.+...|+|+||.|..+   ++.++++.|++.-|.+.+..    ...|.||||+|+.+.+.++|++|++.|+|+.   
T Consensus       135 ~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa  214 (782)
T KOG3676|consen  135 KLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARA  214 (782)
T ss_pred             ccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHh
Confidence            4667788999999999984   56699999999887665543    4689999999999999999999999999982   


Q ss_pred             --------ccCC-----------CCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHH
Q 046832           83 --------HQQG-----------PEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLV  143 (328)
Q Consensus        83 --------~~~~-----------~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll  143 (328)
                              +.+.           ..|+.||..||.-++.|++++|+++++| ++.+|.+|+|.||..+.+-..++.++++
T Consensus       215 ~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd-~~aqDS~GNTVLH~lVi~~~~~My~~~L  293 (782)
T KOG3676|consen  215 CGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD-PNAQDSNGNTVLHMLVIHFVTEMYDLAL  293 (782)
T ss_pred             hccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC-CCccccCCChHHHHHHHHHHHHHHHHHH
Confidence                    1111           1588999999999999999999999998 9999999999999999999999999999


Q ss_pred             HhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcC
Q 046832          144 NWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGH  182 (328)
Q Consensus       144 ~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~  182 (328)
                      +++++    .+...+|++|-|||.+|++.|+.+  +.+++.
T Consensus       294 ~~ga~----~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  294 ELGAN----ALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             hcCCC----ccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            96543    347889999999999999999998  555554

>PF13962 PGG: Domain of unknown function

Probab=99.84  E-value=8.6e-21  Score=143.40  Aligned_cols=86  Identities=29%  Similarity=0.500  Sum_probs=74.5

Q ss_pred             CCCchhhhhHHHHHHHHHHHHHhhhcccCCCCc--------------hh-HHHHHHHHHHHHHHHHHHHHHHHhcCc--c
Q 046832          217 RDSPGETRSALLVVAALVATTSFQFGVNPPGGN--------------AV-AFALFMFFNSLGFKLSIYMIIILTTKF--P  279 (328)
Q Consensus       217 ~~~~~~~~~s~~vva~LIatvtfaa~f~~Pgg~--------------~~-~f~~F~~~~~~a~~~S~~~~~~l~~~~--~  279 (328)
                      +||.+++++++++||+|||||||+|+|+||||+              ++ .|++|+++|++||++|+.++++++++.  +
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~~~~   80 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGLDDF   80 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            578899999999999999999999999999999              23 899999999999999999998888533  1


Q ss_pred             ----------hhhHHHHHHHHHHHHHHHhhhhc
Q 046832          280 ----------LQLGLQLCFLAMYFTYDTAVIAT  302 (328)
Q Consensus       280 ----------~~~~~~~~~~~m~~af~~~~~~~  302 (328)
                                ....+++++.+|++||++|++++
T Consensus        81 ~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   81 RRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence                      11346789999999999998864

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.83  E-value=1e-20  Score=175.93  Aligned_cols=170  Identities=23%  Similarity=0.222  Sum_probs=143.5

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCH
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTP   92 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp   92 (328)
                      ..+.+|.+|.|.||.|+.+|+.++++.|++..+-+ +..|..|.+|||+|++.|+.++++.|+.++..+ +..+-.|.||
T Consensus        41 s~n~qd~~gfTalhha~Lng~~~is~llle~ea~l-dl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~-na~~~e~~tp  118 (854)
T KOG0507|consen   41 SHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDTKGILPLHLAAWNGNLEIVKMLLLQTDIL-NAVNIENETP  118 (854)
T ss_pred             cccccCccchhHHHHHHhcCchHHHHHHhcchhhh-hhhhccCcceEEehhhcCcchHHHHHHhcccCC-CcccccCcCc
Confidence            45788999999999999999999999999987766 777889999999999999999999999998555 8888899999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCcc----ccccccccCCCCchhhH
Q 046832           93 LHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKR----EEIFNMKDEQGNTVLHL  168 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~----~~~~~~~d~~G~T~Lh~  168 (328)
                      ||.|+++|+.+++.+|++++++ .-.+|++++|+|..|++.|+.++++.|++.  +...    ...-..++-.+-+|||+
T Consensus       119 lhlaaqhgh~dvv~~Ll~~~ad-p~i~nns~~t~ldlA~qfgr~~Vvq~ll~~--~~~~~~~~~~~~~~~~~~~~~plHl  195 (854)
T KOG0507|consen  119 LHLAAQHGHLEVVFYLLKKNAD-PFIRNNSKETVLDLASRFGRAEVVQMLLQK--KFPVQSSLRVGDIKRPFPAIYPLHL  195 (854)
T ss_pred             cchhhhhcchHHHHHHHhcCCC-ccccCcccccHHHHHHHhhhhHHHHHHhhh--ccchhhcccCCCCCCCCCCcCCcch
Confidence            9999999999999999999988 778889999999999999999999999874  1110    00123466778889999


Q ss_pred             Hhhccchh--HHhhcCCCCCC
Q 046832          169 ATRKKQRK--ELLLGHGTYSS  187 (328)
Q Consensus       169 A~~~~~~~--~~Ll~~ga~~~  187 (328)
                      |+++|+.+  +.|+.+|-+.+
T Consensus       196 aakngh~~~~~~ll~ag~din  216 (854)
T KOG0507|consen  196 AAKNGHVECMQALLEAGFDIN  216 (854)
T ss_pred             hhhcchHHHHHHHHhcCCCcc
Confidence            99999988  88888887543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.83  E-value=1.7e-20  Score=168.69  Aligned_cols=155  Identities=27%  Similarity=0.340  Sum_probs=140.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHH
Q 046832           24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVH  103 (328)
Q Consensus        24 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~  103 (328)
                      .+.-|+..|+.+-++.|+..+.+. +..|.+|.|+||-+|.-.+.+||++|+++|+++ +..|..|+||||.|+..|+..
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~-~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASP-NLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCc-cccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccHH
Confidence            356788899999999999999888 889999999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHhCCcc----------------------------------------------------------cccccCCCCC
Q 046832          104 VLSEMLSACPEC----------------------------------------------------------IEDVTIQHDT  125 (328)
Q Consensus       104 ~v~~Ll~~~~~~----------------------------------------------------------~~~~~~~g~t  125 (328)
                      +++++++.+++.                                                          .+..+..|.|
T Consensus       121 i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T  200 (527)
T KOG0505|consen  121 IVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGAT  200 (527)
T ss_pred             HHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccch
Confidence            999999877421                                                          1334445899


Q ss_pred             HHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcCCCCC
Q 046832          126 ALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       126 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~  186 (328)
                      .||.|+.+|..++.++|++      .|..++.+|.+|+||||.|+..+..+  ++|+.+|++.
T Consensus       201 ~lHvAaa~Gy~e~~~lLl~------ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~  257 (527)
T KOG0505|consen  201 ALHVAAANGYTEVAALLLQ------AGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADM  257 (527)
T ss_pred             HHHHHHhhhHHHHHHHHHH------hccCcccccccCCCcccHHHHhhhHhHHHHHHHhhccc
Confidence            9999999999999999998      68889999999999999999999999  9999999954

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.82  E-value=7.4e-21  Score=158.71  Aligned_cols=132  Identities=25%  Similarity=0.322  Sum_probs=70.4

Q ss_pred             HcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHH
Q 046832           30 AYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEML  109 (328)
Q Consensus        30 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll  109 (328)
                      +.|+.--|+.-++......+.-|..|.+|||+||+.|+..+++.|+.+|+.+ +..+....||||+|+.+|+.++|+.|+
T Consensus         9 regna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkll   87 (448)
T KOG0195|consen    9 REGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKLL   87 (448)
T ss_pred             hcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHHH
Confidence            3333333333333333333555555555555555555555555555555555 555555555555555555555555555


Q ss_pred             HhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHH
Q 046832          110 SACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLA  169 (328)
Q Consensus       110 ~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A  169 (328)
                      +..++ ++.++..|+||||||+..|+..+.+-|+.      .|+.++..+++|.|||..|
T Consensus        88 ~~kad-vnavnehgntplhyacfwgydqiaedli~------~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   88 SRKAD-VNAVNEHGNTPLHYACFWGYDQIAEDLIS------CGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             HHhcc-cchhhccCCCchhhhhhhcHHHHHHHHHh------ccceeeecccCCCCchhhh
Confidence            55555 55555555555555555555555555554      4555555555555555544

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.82  E-value=1.4e-19  Score=158.43  Aligned_cols=120  Identities=13%  Similarity=0.106  Sum_probs=106.3

Q ss_pred             cccCCCCCc-HHHHHHHCCCHHHHHHHHHcCccccccC----CCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccc-cCC
Q 046832           49 HEVNQDGFS-PMHIASSIGHTGVVRELLKVEQKLCHQQ----GPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDV-TIQ  122 (328)
Q Consensus        49 ~~~d~~g~t-pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~----~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~-~~~  122 (328)
                      ..+|+.|+| |||.|++.|+.+++++|+++|+++ +.+    +..|.||||+|+..|+.++++.|+++|++ ++.. +..
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD-VN~~~~~~  103 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD-VNRYAEEA  103 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cCcccCCC
Confidence            456777776 566777779999999999999998 665    46899999999999999999999999998 7765 467


Q ss_pred             CCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh
Q 046832          123 HDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK  176 (328)
Q Consensus       123 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~  176 (328)
                      |.||||.|+.+++.+++++|++      .|++++.+|.+|.||||+|+..++..
T Consensus       104 g~TpLh~Aa~~~~~eivklLL~------~GAdin~kd~~G~TpL~~A~~~~~~~  151 (300)
T PHA02884        104 KITPLYISVLHGCLKCLEILLS------YGADINIQTNDMVTPIELALMICNNF  151 (300)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCCHHHHHHHhCChh
Confidence            9999999999999999999998      78899999999999999999987766

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.82  E-value=2.7e-20  Score=173.11  Aligned_cols=173  Identities=27%  Similarity=0.308  Sum_probs=152.0

Q ss_pred             hhhHHHHHHHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCcccccc
Q 046832            5 TAIKAFIFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQ   84 (328)
Q Consensus         5 ~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~   84 (328)
                      .++.+...+++..|..|.+|||+|+..|+.|+++.++.++ +..+..+.+|.||||.|++.||.+++.+|+++++++ ..
T Consensus        66 ~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp-~i  143 (854)
T KOG0507|consen   66 KLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQT-DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADP-FI  143 (854)
T ss_pred             HHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcc-cCCCcccccCcCccchhhhhcchHHHHHHHhcCCCc-cc
Confidence            3566667788899999999999999999999999999998 555889999999999999999999999999999999 88


Q ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHHhCCc-------ccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCcccccccc
Q 046832           85 QGPEKNTPLHCAAIKGKVHVLSEMLSACPE-------CIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNM  157 (328)
Q Consensus        85 ~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~-------~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  157 (328)
                      +|+.+.|+|..|++.|+.++++.|++..-+       ....++..+.+|||.|+++||.++++.|++      .|.++|.
T Consensus       144 ~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~------ag~din~  217 (854)
T KOG0507|consen  144 RNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLE------AGFDINY  217 (854)
T ss_pred             cCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHh------cCCCccc
Confidence            999999999999999999999999986211       012344567799999999999999999998      7888999


Q ss_pred             ccCCCCchhhHHhhccchh--HHhhcCCCCC
Q 046832          158 KDEQGNTVLHLATRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       158 ~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~  186 (328)
                      ..++| |+||-|+..|..+  .+|++.|...
T Consensus       218 ~t~~g-talheaalcgk~evvr~ll~~gin~  247 (854)
T KOG0507|consen  218 TTEDG-TALHEAALCGKAEVVRFLLEIGINT  247 (854)
T ss_pred             ccccc-hhhhhHhhcCcchhhhHHHhhcccc
Confidence            88877 9999999999888  8888888643

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=1.6e-19  Score=139.91  Aligned_cols=120  Identities=28%  Similarity=0.305  Sum_probs=111.2

Q ss_pred             HHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChh
Q 046832           58 PMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFE  137 (328)
Q Consensus        58 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~  137 (328)
                      -+-+|+..+....|+.||+..++..+.+|.+|+||||-|+.+|+.++++.|+..+++ .+.+...||||||.|++.++.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-KEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC-cccccccCccchhhhhcccchh
Confidence            467899999999999999999999999999999999999999999999999999998 8999999999999999999999


Q ss_pred             hHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh---HHhhcCCC
Q 046832          138 AITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK---ELLLGHGT  184 (328)
Q Consensus       138 ~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~---~~Ll~~ga  184 (328)
                      ++.+|++      .|+++|.+.+...||||+|+...+..   ++|+....
T Consensus       145 va~~LLq------hgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dry  188 (228)
T KOG0512|consen  145 VAGRLLQ------HGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRY  188 (228)
T ss_pred             HHHHHHh------ccCcccccccccchhhHHhhcccchHHHHHHHhhccc
Confidence            9999998      78999999999999999999988776   66665443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.80  E-value=2.3e-19  Score=178.62  Aligned_cols=156  Identities=18%  Similarity=0.178  Sum_probs=124.1

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhc--CCCcccccCCCCCcHHH-HHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHH
Q 046832           19 LRKGNPLHVASAYGHVDFVKEIINV--RPDLAHEVNQDGFSPMH-IASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHC   95 (328)
Q Consensus        19 ~~g~t~Lh~A~~~g~~~~v~~Ll~~--~~~~~~~~d~~g~tpLh-~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~   95 (328)
                      ..++.+++.|++.|+.+.++.++++  +.++ +..|..|+|||| .|+..++.++++.|+++|+     ++..|.||||.
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~i-n~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~   88 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNI-NCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHA   88 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCC-CCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHH
Confidence            3567899999999999999999998  6666 778999999999 8889999999999999886     67789999999


Q ss_pred             HHHcC---cHHHHHHHHHhCCcc-----c----ccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCcccccccccc----
Q 046832           96 AAIKG---KVHVLSEMLSACPEC-----I----EDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKD----  159 (328)
Q Consensus        96 Aa~~g---~~~~v~~Ll~~~~~~-----~----~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d----  159 (328)
                      |+..+   ..++++.+....++.     .    ...+..|.||||+|+.+|+.+++++|+++      |++++.++    
T Consensus        89 A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~------GAdv~~~~~~~~  162 (743)
T TIGR00870        89 ISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLER------GASVPARACGDF  162 (743)
T ss_pred             HHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhC------CCCCCcCcCCch
Confidence            99722   223444444433220     1    11235699999999999999999999984      45555432    


Q ss_pred             ----------CCCCchhhHHhhccchh--HHhhcCCCCC
Q 046832          160 ----------EQGNTVLHLATRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       160 ----------~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~  186 (328)
                                ..|+||||.|+..++.+  ++|+++|++.
T Consensus       163 ~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi  201 (743)
T TIGR00870       163 FVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI  201 (743)
T ss_pred             hhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcch
Confidence                      46999999999999999  9999999844

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.80  E-value=1.3e-18  Score=133.80  Aligned_cols=125  Identities=30%  Similarity=0.530  Sum_probs=108.9

Q ss_pred             hccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHH
Q 046832           16 LKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHC   95 (328)
Q Consensus        16 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~   95 (328)
                      .+|.+|.||||.|++.|+.++++.|++.+.+. +..+..|.||||.|+..++.+++++|++.++.. +..+..|.||+|+
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~   79 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHL   79 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHH
Confidence            45688999999999999999999999988876 778889999999999999999999999998766 7778889999999


Q ss_pred             HHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHH
Q 046832           96 AAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLV  143 (328)
Q Consensus        96 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll  143 (328)
                      |+..++.+++++|++.+.+ .+..+..|.||+++|...++.+++++|+
T Consensus        80 a~~~~~~~~~~~L~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          80 AARNGNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999998766 6667788889999999999888888773

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.79  E-value=2.5e-19  Score=149.59  Aligned_cols=119  Identities=24%  Similarity=0.329  Sum_probs=112.1

Q ss_pred             HHHHHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCC
Q 046832           10 FIFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEK   89 (328)
Q Consensus        10 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g   89 (328)
                      -..++|.-|+.|.+|||+||+.|+..+++.|+.+|..+ +..|....||||+|+..||.++|+.|++..+++ +..+..|
T Consensus        23 tehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkll~~kadv-navnehg  100 (448)
T KOG0195|consen   23 TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADV-NAVNEHG  100 (448)
T ss_pred             cccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHHHHHhccc-chhhccC
Confidence            34578889999999999999999999999999999988 888888899999999999999999999999999 9999999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHH
Q 046832           90 NTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAI  131 (328)
Q Consensus        90 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~  131 (328)
                      .||||+||..|...+.+-|+..|+. ++..++.|.|||..|-
T Consensus       101 ntplhyacfwgydqiaedli~~ga~-v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  101 NTPLHYACFWGYDQIAEDLISCGAA-VNICNKKGMTPLDKAK  141 (448)
T ss_pred             CCchhhhhhhcHHHHHHHHHhccce-eeecccCCCCchhhhc
Confidence            9999999999999999999999988 8999999999999774

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.77  E-value=1.5e-18  Score=149.17  Aligned_cols=133  Identities=21%  Similarity=0.290  Sum_probs=120.9

Q ss_pred             HHHHhhccCCCChHHHHHHHc-----CCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccC
Q 046832           11 IFLVKLKALRKGNPLHVASAY-----GHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQ   85 (328)
Q Consensus        11 ~~~~~~~~~~g~t~Lh~A~~~-----g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~   85 (328)
                      ..+++.+|..|.||.++|+..     .+.++|..|.+.| +++-.....|+|+|++|+..|+.++|+.||..|+++ |.+
T Consensus       292 vC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdV-NiQ  369 (452)
T KOG0514|consen  292 VCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADV-NIQ  369 (452)
T ss_pred             cccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCC-ccc
Confidence            346789999999999999875     4678999999876 554555678999999999999999999999999999 999


Q ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHh
Q 046832           86 GPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNW  145 (328)
Q Consensus        86 ~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~  145 (328)
                      |.+|.|+|++|+++||.|++++||.....++...|.+|.|+|.+|...||.||.-+|..+
T Consensus       370 DdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  370 DDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             cCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            999999999999999999999999988888999999999999999999999999999765

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.77  E-value=5.2e-18  Score=123.16  Aligned_cols=84  Identities=26%  Similarity=0.463  Sum_probs=63.9

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHH
Q 046832           25 LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHV  104 (328)
Q Consensus        25 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~  104 (328)
                      ||.|++.|+.++++.|++.+.++ +.    |+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+.+|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHHH
Confidence            67788888888888888877665 22    777888888888888888888888777 7777778888888888888888


Q ss_pred             HHHHHHhCCc
Q 046832          105 LSEMLSACPE  114 (328)
Q Consensus       105 v~~Ll~~~~~  114 (328)
                      +++|++++++
T Consensus        75 ~~~Ll~~g~~   84 (89)
T PF12796_consen   75 VKLLLEHGAD   84 (89)
T ss_dssp             HHHHHHTTT-
T ss_pred             HHHHHHcCCC
Confidence            8888877765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.76  E-value=1.2e-17  Score=128.41  Aligned_cols=119  Identities=29%  Similarity=0.515  Sum_probs=109.4

Q ss_pred             ccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHH
Q 046832           50 EVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHL  129 (328)
Q Consensus        50 ~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  129 (328)
                      .+|.+|.||||+|+..|+.+++++|++.+.+. +.++..|.||+|.|+..++.++++.|++.++. .+..+..|.||+|+
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l~~   79 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKDGNTPLHL   79 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHH
Confidence            35678999999999999999999999999987 78899999999999999999999999999975 67778899999999


Q ss_pred             HHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh
Q 046832          130 AIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK  176 (328)
Q Consensus       130 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~  176 (328)
                      |++.++.+++++|++      .+.+.+..|..|.||+|.|...++.+
T Consensus        80 a~~~~~~~~~~~L~~------~~~~~~~~~~~~~~~l~~~~~~~~~~  120 (126)
T cd00204          80 AARNGNLDVVKLLLK------HGADVNARDKDGRTPLHLAAKNGHLE  120 (126)
T ss_pred             HHHcCcHHHHHHHHH------cCCCCcccCCCCCCHHHHHHhcCCHH
Confidence            999999999999998      55778889999999999999987766

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.75  E-value=1.1e-17  Score=121.38  Aligned_cols=89  Identities=27%  Similarity=0.449  Sum_probs=77.8

Q ss_pred             HHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhh
Q 046832           59 MHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEA  138 (328)
Q Consensus        59 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~  138 (328)
                      ||+|++.|+.+++++|++.+.++ +.    |.||||+|+..|+.+++++|++.+++ ++..|.+|+||||+|+.+|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLENGAD-INSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHHTTTC-TT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHHhccc-ccccCCCCCCHHHHHHHcCCHHH
Confidence            79999999999999999988776 33    88999999999999999999999987 88888999999999999999999


Q ss_pred             HHHHHHhhhcCcccccccccc
Q 046832          139 ITVLVNWIRGMKREEIFNMKD  159 (328)
Q Consensus       139 ~~~Ll~~~~~~~~~~~~~~~d  159 (328)
                      +++|++      .|++++.+|
T Consensus        75 ~~~Ll~------~g~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLE------HGADVNIRN   89 (89)
T ss_dssp             HHHHHH------TTT-TTSS-
T ss_pred             HHHHHH------cCCCCCCcC
Confidence            999998      566677664

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02792 ankyrin-like protein; Provisional

Probab=99.75  E-value=2.6e-17  Score=155.34  Aligned_cols=156  Identities=14%  Similarity=0.135  Sum_probs=130.4

Q ss_pred             CChHHHHHHHcC--CHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCC--CCHHHHH
Q 046832           21 KGNPLHVASAYG--HVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEK--NTPLHCA   96 (328)
Q Consensus        21 g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g--~tpLh~A   96 (328)
                      =+-.||.-...+  +.+++++|++.|.+..   ......++|.|+..|+.+++++|+++|+++ +.+|.+|  .||||+|
T Consensus       306 ~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~g~~~TpLh~A  381 (631)
T PHA02792        306 IQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKNGNVV-VEDDDNIINIMPLFPT  381 (631)
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHcCCch-hhhcCCCCChhHHHHH
Confidence            344677777777  7899999999999863   223567899999999999999999999998 7788775  6999998


Q ss_pred             HHcCcH---HHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhh--
Q 046832           97 AIKGKV---HVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATR--  171 (328)
Q Consensus        97 a~~g~~---~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~--  171 (328)
                      +..+..   ++++.++++|++ ++.+|..|+||||+|+..++.+++++|++      .|+++|.+|..|+||||+|+.  
T Consensus       382 ~~n~~~~v~~IlklLIs~GAD-IN~kD~~G~TPLh~Aa~~~n~eivelLLs------~GADIN~kD~~G~TpL~~A~~~~  454 (631)
T PHA02792        382 LSIHESDVLSILKLCKPYIDD-INKIDKHGRSILYYCIESHSVSLVEWLID------NGADINITTKYGSTCIGICVILA  454 (631)
T ss_pred             HHhccHhHHHHHHHHHhcCCc-cccccccCcchHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCCHHHHHHHHH
Confidence            876654   467888999998 89999999999999999999999999998      688899999999999999976  


Q ss_pred             ccc--------hh--HHhhcCCCCCC
Q 046832          172 KKQ--------RK--ELLLGHGTYSS  187 (328)
Q Consensus       172 ~~~--------~~--~~Ll~~ga~~~  187 (328)
                      .+.        .+  ++|+++|....
T Consensus       455 ~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        455 HACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             hcccHHHHHHHHHHHHHHHhcCCChh
Confidence            211        12  78888887543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.66  E-value=1.2e-15  Score=129.51  Aligned_cols=128  Identities=27%  Similarity=0.386  Sum_probs=83.6

Q ss_pred             cccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCc-----HHHHHHHHHhCC--cccccccC
Q 046832           49 HEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGK-----VHVLSEMLSACP--ECIEDVTI  121 (328)
Q Consensus        49 ~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~-----~~~v~~Ll~~~~--~~~~~~~~  121 (328)
                      ...+..+.+++|.++..+..+++++++..+.++ +.+|.+|.||||+|+..|+     .++++.|++.++  +.....|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            344555666666666666666666666666666 6666666666666666666     666666666666  44555566


Q ss_pred             CCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcCC
Q 046832          122 QHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG  183 (328)
Q Consensus       122 ~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~g  183 (328)
                      .|+||||+|+..|+.+++++|++      .+++++.+|..|.|++|.|+..++..  +.++..+
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~------~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLE------AGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHh------cCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            66666666666666666666666      45556666666666766666666666  5555544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.64  E-value=4.6e-15  Score=125.99  Aligned_cols=129  Identities=28%  Similarity=0.409  Sum_probs=120.7

Q ss_pred             hhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCC-----HHHHHHHHHcCc--cccccCCC
Q 046832           15 KLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGH-----TGVVRELLKVEQ--KLCHQQGP   87 (328)
Q Consensus        15 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~-----~~iv~~Ll~~~~--~~~~~~~~   87 (328)
                      ..++..+.+++|.++..+..+.++.++..+.++ +.+|.+|.||||+|+..|+     .++++.|++.|+  +....+|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            345566899999999999999999999999999 9999999999999999999     999999999999  56588899


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHh
Q 046832           88 EKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNW  145 (328)
Q Consensus        88 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~  145 (328)
                      +|.||||+|+..|+.++++.+++.+++ .+..+..|.|+++.|+..++.++++.+++.
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAGAD-PNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcCCC-CcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            999999999999999999999999998 788899999999999999999999999873

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.63  E-value=4.3e-15  Score=140.33  Aligned_cols=170  Identities=20%  Similarity=0.177  Sum_probs=136.5

Q ss_pred             hhhHHHHHHHhh----ccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccc---------C--------------CCCCc
Q 046832            5 TAIKAFIFLVKL----KALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEV---------N--------------QDGFS   57 (328)
Q Consensus         5 ~~~~~~~~~~~~----~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~---------d--------------~~g~t   57 (328)
                      .+++-+++++|.    ....|.||||.|+.+.+.++|+.|++.|+|+ +.+         |              +.|..
T Consensus       164 ~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV-~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEy  242 (782)
T KOG3676|consen  164 VLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADV-HARACGAFFCPDDQKASRKSTNYTGYFYFGEY  242 (782)
T ss_pred             HHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCch-hhHhhccccCcccccccccccCCcceeeeccC
Confidence            355666666654    4678999999999999999999999999876 321         1              24678


Q ss_pred             HHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCc-ccccccCCCCCHHHHHHHcCCh
Q 046832           58 PMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPE-CIEDVTIQHDTALHLAIKNNQF  136 (328)
Q Consensus        58 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~-~~~~~~~~g~t~Lh~A~~~~~~  136 (328)
                      ||-+||..++.|++++|+++|+|+ +.+|.+|+|.||..+.+-..++-..+++.++. ....++.+|-|||.+|++.|+.
T Consensus       243 PLSfAAC~nq~eivrlLl~~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~  321 (782)
T KOG3676|consen  243 PLSFAACTNQPEIVRLLLAHGADP-NAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKK  321 (782)
T ss_pred             chHHHHHcCCHHHHHHHHhcCCCC-CccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhH
Confidence            999999999999999999999999 99999999999999999889999999998876 3456788999999999999999


Q ss_pred             hhHHHHHHhhhcC--------ccccccccccC--CCCchhhHHhhccchh
Q 046832          137 EAITVLVNWIRGM--------KREEIFNMKDE--QGNTVLHLATRKKQRK  176 (328)
Q Consensus       137 ~~~~~Ll~~~~~~--------~~~~~~~~~d~--~G~T~Lh~A~~~~~~~  176 (328)
                      ++++.+++.-+..        ...-+++..|.  +-++.|.+.+.....+
T Consensus       322 emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg~~~e  371 (782)
T KOG3676|consen  322 EMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYGIKNE  371 (782)
T ss_pred             HHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhcCCcHH
Confidence            9999999851111        12234555554  4567788777664333

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.61  E-value=3.8e-15  Score=103.64  Aligned_cols=104  Identities=16%  Similarity=0.229  Sum_probs=88.3

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCc
Q 046832           22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGK  101 (328)
Q Consensus        22 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~  101 (328)
                      +--..+++++|..+-|+.....+-++...  ..|++|||+|+..|+.+++.+|+..|+++ +.+|+.|-|||..|+..||
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhh
Confidence            34567899999999999999988666333  37999999999999999999999999999 8999999999999999999


Q ss_pred             HHHHHHHHHhCCcccccccCCCCCHHHH
Q 046832          102 VHVLSEMLSACPECIEDVTIQHDTALHL  129 (328)
Q Consensus       102 ~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  129 (328)
                      .++|++|+++|++ -.....+|.+.+..
T Consensus        80 ~~cVklLL~~GAd-rt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   80 RDCVKLLLQNGAD-RTIHAPDGTALIEA  106 (117)
T ss_pred             HHHHHHHHHcCcc-cceeCCCchhHHhh
Confidence            9999999999988 45555666655543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.58  E-value=1.5e-15  Score=146.42  Aligned_cols=165  Identities=25%  Similarity=0.319  Sum_probs=146.9

Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHH
Q 046832           18 ALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAA   97 (328)
Q Consensus        18 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa   97 (328)
                      ..+-+|+|..||..||.|+++.|+.+|.++ ..+|+.|.+||.+|+-.||..+|+.|+.+.+++....|+.+.|+|.+||
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rgani-ehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGANI-EHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhcccc-cccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec
Confidence            445579999999999999999999999998 8899999999999999999999999999999998889999999999999


Q ss_pred             HcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccc--cCCCCchhhHHhhccch
Q 046832           98 IKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMK--DEQGNTVLHLATRKKQR  175 (328)
Q Consensus        98 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~--d~~G~T~Lh~A~~~~~~  175 (328)
                      ..|+.++++.||..+++ -+.++....|||.+|..-|..+++..|+.      .|..+|.+  .+.|-.||.+|..+|+.
T Consensus       833 sggr~~vvelLl~~gan-kehrnvsDytPlsla~Sggy~~iI~~llS------~GseInSrtgSklgisPLmlatmngh~  905 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAGAN-KEHRNVSDYTPLSLARSGGYTKIIHALLS------SGSEINSRTGSKLGISPLMLATMNGHQ  905 (2131)
T ss_pred             CCCcchHHHHHHHhhcc-ccccchhhcCchhhhcCcchHHHHHHHhh------cccccccccccccCcchhhhhhhcccc
Confidence            99999999999999988 67778888999999999999999999998      45445543  56788999999999999


Q ss_pred             h--HHhhcCCCCCCchh
Q 046832          176 K--ELLLGHGTYSSGRL  190 (328)
Q Consensus       176 ~--~~Ll~~ga~~~~~~  190 (328)
                      .  +.|++.|.+.+..+
T Consensus       906 ~at~~ll~~gsdiNaqI  922 (2131)
T KOG4369|consen  906 AATLSLLQPGSDINAQI  922 (2131)
T ss_pred             HHHHHHhcccchhcccc
Confidence            8  88999888554433

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.54  E-value=3.8e-14  Score=138.72  Aligned_cols=112  Identities=19%  Similarity=0.132  Sum_probs=97.6

Q ss_pred             HHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChh
Q 046832           58 PMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFE  137 (328)
Q Consensus        58 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~  137 (328)
                      .||.|+..|+.+.++.|++.|+++ +.+|.+|.||||+|+..|+.+++++|++.+++ ++..|..|+||||+|+.+|+.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad-vn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHH
Confidence            588999999999999999999998 88899999999999999999999999999988 7889999999999999999999


Q ss_pred             hHHHHHHh-hhcCccccccccccCCCCchhhHHhh
Q 046832          138 AITVLVNW-IRGMKREEIFNMKDEQGNTVLHLATR  171 (328)
Q Consensus       138 ~~~~Ll~~-~~~~~~~~~~~~~d~~G~T~Lh~A~~  171 (328)
                      ++++|+++ ..+...+++.+..+.+|++|+..+..
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~~  197 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDSP  197 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCccccCCCCccchhhh
Confidence            99999985 22234577788888888888776553

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.53  E-value=2.2e-14  Score=93.48  Aligned_cols=54  Identities=31%  Similarity=0.575  Sum_probs=30.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHH
Q 046832           21 KGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELL   75 (328)
Q Consensus        21 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll   75 (328)
                      |.||||+|++.|+.+++++|++++.++ +.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            456666666666666666666666555 445666666666666666666666654

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.53  E-value=6.7e-14  Score=136.96  Aligned_cols=105  Identities=22%  Similarity=0.208  Sum_probs=93.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHH
Q 046832           24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVH  103 (328)
Q Consensus        24 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~  103 (328)
                      .|+.|+..|+.+.++.|++.+.++ +.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHH
Confidence            488999999999999999999998 888999999999999999999999999999998 899999999999999999999


Q ss_pred             HHHHHHHh-------CCcccccccCCCCCHHHHHH
Q 046832          104 VLSEMLSA-------CPECIEDVTIQHDTALHLAI  131 (328)
Q Consensus       104 ~v~~Ll~~-------~~~~~~~~~~~g~t~Lh~A~  131 (328)
                      +++.|+++       +++ .+..+..|.+|+..+.
T Consensus       163 iv~~Ll~~~~~~~~~ga~-~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGAN-AKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHhCCCcccccCCC-CCccccCCCCccchhh
Confidence            99999998       444 4555566666555443

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.52  E-value=8.3e-14  Score=116.70  Aligned_cols=124  Identities=21%  Similarity=0.233  Sum_probs=111.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHc
Q 046832           20 RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIK   99 (328)
Q Consensus        20 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~   99 (328)
                      .-+.||..++-.|+.+....|++....+ +.+|.+|+|||..|+..|+.++|+.|+++|+|+...++..+.||||.|+..
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQV-NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhh-hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            4467899999999999999999875555 889999999999999999999999999999999888888999999999999


Q ss_pred             CcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHh
Q 046832          100 GKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNW  145 (328)
Q Consensus       100 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~  145 (328)
                      |+.++.+.|++.|+. ....+.-|+|+-.+|+--||.+++..+-++
T Consensus        90 Gn~dvcrllldaGa~-~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGAR-MYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CCchHHHHHHhccCc-cccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            999999999999988 778888999999999999999998877443

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.51  E-value=1.8e-14  Score=139.00  Aligned_cols=171  Identities=22%  Similarity=0.247  Sum_probs=116.8

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCH
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTP   92 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp   92 (328)
                      .++-+|+.|.+||..|+..||..+|+.|++...++-...|+.+.|+|-+||..|..++|..||..|++- ..++-...||
T Consensus       782 niehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gank-ehrnvsDytP  860 (2131)
T KOG4369|consen  782 NIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANK-EHRNVSDYTP  860 (2131)
T ss_pred             cccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccc-cccchhhcCc
Confidence            456678888888888888888888888888777776666777777777777777777777777777766 5566666777


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCccccccc--CCCCCHHHHHHHcCChhhHHHHHHhhhcCc--------------------
Q 046832           93 LHCAAIKGKVHVLSEMLSACPECIEDVT--IQHDTALHLAIKNNQFEAITVLVNWIRGMK--------------------  150 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~--~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~--------------------  150 (328)
                      |.+|...|..++|+.|+..|.+ ++.+.  ..|-.||++|..+||.+..+.|++-+.+++                    
T Consensus       861 lsla~Sggy~~iI~~llS~Gse-InSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~  939 (2131)
T KOG4369|consen  861 LSLARSGGYTKIIHALLSSGSE-INSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRP  939 (2131)
T ss_pred             hhhhcCcchHHHHHHHhhcccc-cccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcc
Confidence            7777777777777777777665 44333  345566666666666666666665333221                    


Q ss_pred             --------cccccccccCCCCchhhHHhhccchh--HHhhcCCCC
Q 046832          151 --------REEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTY  185 (328)
Q Consensus       151 --------~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~  185 (328)
                              ..+++..+-+.|-|||.-++..|..+  ++|+..|++
T Consensus       940 evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad  984 (2131)
T KOG4369|consen  940 EVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGAD  984 (2131)
T ss_pred             hHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccc
Confidence                    33445556666777777777777666  777777773

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.50  E-value=6.4e-14  Score=91.31  Aligned_cols=54  Identities=31%  Similarity=0.554  Sum_probs=40.0

Q ss_pred             CCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHH
Q 046832           55 GFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEML  109 (328)
Q Consensus        55 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll  109 (328)
                      |+||||+|+..|+.+++++|+++|.++ +.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            678888888888888888888888887 777888888888888888888888775

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=7.7e-14  Score=125.47  Aligned_cols=118  Identities=23%  Similarity=0.318  Sum_probs=105.1

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHH
Q 046832           25 LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHV  104 (328)
Q Consensus        25 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~  104 (328)
                      |.-|+..|..|+|+..+..-.|. ...|.+|.|+||-|+..||.+||++|++.|+++ +..|++|+||||+|+..+++.+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCchHH
Confidence            45688999999999999987776 788999999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHhCCcccccccCCCCCHHHHHH--HcCChhhHHHHHH
Q 046832          105 LSEMLSACPECIEDVTIQHDTALHLAI--KNNQFEAITVLVN  144 (328)
Q Consensus       105 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~--~~~~~~~~~~Ll~  144 (328)
                      ++.|++.|+...-..-.++.|+..-+-  +.|...|.++|-.
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            999999999865556677888887653  5677889999954

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.49  E-value=2.9e-14  Score=93.51  Aligned_cols=56  Identities=30%  Similarity=0.492  Sum_probs=23.7

Q ss_pred             HHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHH
Q 046832           40 IINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCA   96 (328)
Q Consensus        40 Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A   96 (328)
                      |+++++...+.+|..|+||||+||..|+.+++++|++.|+++ +.+|.+|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T-T---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcCCCCCHHHhC
Confidence            345553334666667777777777777777777777666666 66677777777665

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.47  E-value=2.3e-13  Score=94.82  Aligned_cols=104  Identities=17%  Similarity=0.214  Sum_probs=89.3

Q ss_pred             cHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCh
Q 046832           57 SPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQF  136 (328)
Q Consensus        57 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~  136 (328)
                      --..|++++|..+-|+.....|-++ +.. ..|++|||+|+-.|+.+++++|+..|++ ++.+|+.|-|||..|+..||.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nV-n~~-~ggR~plhyAAD~GQl~ilefli~iGA~-i~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNV-NEI-YGGRTPLHYAADYGQLSILEFLISIGAN-IQDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccH-HHH-hCCcccchHhhhcchHHHHHHHHHhccc-cCCccccCCcHHHHHHHHhhH
Confidence            3467889999999999999988766 322 3799999999999999999999999999 899999999999999999999


Q ss_pred             hhHHHHHHhhhcCccccccccccCCCCchhhHH
Q 046832          137 EAITVLVNWIRGMKREEIFNMKDEQGNTVLHLA  169 (328)
Q Consensus       137 ~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A  169 (328)
                      +++++|++      .|++-..+-.+|.+.+..+
T Consensus        81 ~cVklLL~------~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   81 DCVKLLLQ------NGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHH------cCcccceeCCCchhHHhhc
Confidence            99999998      5677677777887766533

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.45  E-value=5.7e-14  Score=92.10  Aligned_cols=56  Identities=29%  Similarity=0.370  Sum_probs=25.9

Q ss_pred             HHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHH
Q 046832          108 MLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLA  169 (328)
Q Consensus       108 Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A  169 (328)
                      |++.++..++..|..|+||||+|+++|+.+++++|++      .+++++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~------~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ------NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHH------CT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH------CcCCCCCCcCCCCCHHHhC
Confidence            3455544567777777777777777777777777775      6677777777777777776

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.43  E-value=9e-13  Score=110.54  Aligned_cols=99  Identities=17%  Similarity=0.225  Sum_probs=92.9

Q ss_pred             HHHHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCC
Q 046832           11 IFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN   90 (328)
Q Consensus        11 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~   90 (328)
                      .+-+|.+|.+|.|||..|+..|+.++++.|++.|.|++..++..++||||+|+..|+.++.+.|++.|+.. +..++-|+
T Consensus        35 vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~-~~vNsvgr  113 (396)
T KOG1710|consen   35 VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARM-YLVNSVGR  113 (396)
T ss_pred             hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCcc-ccccchhh
Confidence            44578899999999999999999999999999999998889999999999999999999999999999998 88999999


Q ss_pred             CHHHHHHHcCcHHHHHHHHH
Q 046832           91 TPLHCAAIKGKVHVLSEMLS  110 (328)
Q Consensus        91 tpLh~Aa~~g~~~~v~~Ll~  110 (328)
                      |+-..|+.-|+.++|..+-.
T Consensus       114 TAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen  114 TAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             hHHHHHHHhcchHHHHHHhc
Confidence            99999999999999977643

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=1.4e-12  Score=117.48  Aligned_cols=95  Identities=18%  Similarity=0.258  Sum_probs=83.5

Q ss_pred             hhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHH
Q 046832           15 KLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLH   94 (328)
Q Consensus        15 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh   94 (328)
                      ...|++|-|+||-|+..||.+||++|++.|.++ |..|.+||||||+||++++..+++.|++.|+.+....-+++.|+..
T Consensus       577 SqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~e  655 (752)
T KOG0515|consen  577 SQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAE  655 (752)
T ss_pred             CCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhh
Confidence            467999999999999999999999999999999 9999999999999999999999999999999987777778888876


Q ss_pred             HH--HHcCcHHHHHHHHH
Q 046832           95 CA--AIKGKVHVLSEMLS  110 (328)
Q Consensus        95 ~A--a~~g~~~~v~~Ll~  110 (328)
                      -+  .+.|..++.++|-.
T Consensus       656 KCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  656 KCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hcchhhhhHHHHHHHHHH
Confidence            43  34567777777743

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.96  E-value=7.5e-10  Score=98.98  Aligned_cols=94  Identities=22%  Similarity=0.220  Sum_probs=85.2

Q ss_pred             cCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 046832           51 VNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLA  130 (328)
Q Consensus        51 ~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A  130 (328)
                      ++.++..++.+|++.|++..++.+.-.|.++ +.+|.+.+|+||+||..|+.+++++|++.+....+.+|..|+|||.-|
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHh
Confidence            4567788999999999999999999889998 999999999999999999999999999998888889999999999999


Q ss_pred             HHcCChhhHHHHHHh
Q 046832          131 IKNNQFEAITVLVNW  145 (328)
Q Consensus       131 ~~~~~~~~~~~Ll~~  145 (328)
                      ...+|.+++++|-+.
T Consensus       581 ~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEA  595 (622)
T ss_pred             HhcCcHHHHHHHHHH
Confidence            999999999999875

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.94  E-value=9.2e-10  Score=98.41  Aligned_cols=92  Identities=24%  Similarity=0.241  Sum_probs=66.4

Q ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCc
Q 046832           85 QGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNT  164 (328)
Q Consensus        85 ~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T  164 (328)
                      ++.++..++.+|++.|++..++.+.-.+.+ ++..|.+.+|+||.|+..|+.+++++|++.     .+.+++.+|..|+|
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D-~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~-----~kv~~~~kDRw~rt  575 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMD-LETKDYDDRTALHVAAAEGHVEVVKFLLNA-----CKVDPDPKDRWGRT  575 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhccc-ccccccccchhheeecccCceeHHHHHHHH-----HcCCCChhhccCCC
Confidence            344566677777777777777777777666 777777777777777777777777777773     56677777777777


Q ss_pred             hhhHHhhccchh--HHhhcC
Q 046832          165 VLHLATRKKQRK--ELLLGH  182 (328)
Q Consensus       165 ~Lh~A~~~~~~~--~~Ll~~  182 (328)
                      ||+-|..-++.+  ++|-+.
T Consensus       576 PlDdA~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  576 PLDDAKHFKHKEVVKLLEEA  595 (622)
T ss_pred             cchHhHhcCcHHHHHHHHHH
Confidence            777777777777  555443

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.92  E-value=3.7e-09  Score=95.03  Aligned_cols=96  Identities=15%  Similarity=0.199  Sum_probs=86.6

Q ss_pred             HhhccCCCChH------HHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCC
Q 046832           14 VKLKALRKGNP------LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGP   87 (328)
Q Consensus        14 ~~~~~~~g~t~------Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~   87 (328)
                      +..+|++|-|.      ||..++.|+.|..-.|+..|++.+....+.|.||||.|++.|+..-+++|+-+|+|+ ...|.
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~  198 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-GAQDS  198 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCC-CCCCC
Confidence            45677777654      899999999999999999999985556678999999999999999999999999999 99999


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHH
Q 046832           88 EKNTPLHCAAIKGKVHVLSEMLS  110 (328)
Q Consensus        88 ~g~tpLh~Aa~~g~~~~v~~Ll~  110 (328)
                      +|.||+.+|-..||.++.+.|++
T Consensus       199 ~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  199 SGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCCcHHHHHHhcCchHHHHHHHH
Confidence            99999999999999988887765

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.90  E-value=5.2e-09  Score=95.56  Aligned_cols=118  Identities=18%  Similarity=0.119  Sum_probs=86.6

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCcc-ccccCCCCCCCHHHHHHHcCcHH
Q 046832           25 LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQK-LCHQQGPEKNTPLHCAAIKGKVH  103 (328)
Q Consensus        25 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~~~g~tpLh~Aa~~g~~~  103 (328)
                      +..|+..++.--+++.-..|.++ ..++.+-.|.||+|++.|+-++|+|+|++++. +.+..|..|.|+||-|+..++-.
T Consensus       870 il~av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            34555666655555555666666 56677778888888888888888888888764 33556777888888888888888


Q ss_pred             HHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHH
Q 046832          104 VLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVN  144 (328)
Q Consensus       104 ~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~  144 (328)
                      +.++|++.|+. ....|.+|.||-.-|-+.|+.+...+|-.
T Consensus       949 vc~~lvdagas-l~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  949 VCQLLVDAGAS-LRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHHHhcchh-heecccCCCChHHHHHhcCCchHHHHHhh
Confidence            88888887776 67777788888888888788777777743

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.90  E-value=1.4e-09  Score=103.23  Aligned_cols=86  Identities=20%  Similarity=0.279  Sum_probs=72.7

Q ss_pred             HHHHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccC-CCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCC
Q 046832           11 IFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVN-QDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEK   89 (328)
Q Consensus        11 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g   89 (328)
                      ....+++|.-|+|+||.|+..|..++++.|+++|.++ ..+| +.|+||||-|...|++|++-.||.+|..+ ..+|++|
T Consensus        42 ~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL-~i~Dkeg  119 (1267)
T KOG0783|consen   42 QNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL-RIKDKEG  119 (1267)
T ss_pred             hhhhhHHHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHhcCCce-EEecccC
Confidence            3457888889999999999999999999999998888 5555 57899999999999999999999998888 8889999


Q ss_pred             CCHHHHHHH
Q 046832           90 NTPLHCAAI   98 (328)
Q Consensus        90 ~tpLh~Aa~   98 (328)
                      .+||..-++
T Consensus       120 lsplq~~~r  128 (1267)
T KOG0783|consen  120 LSPLQFLSR  128 (1267)
T ss_pred             CCHHHHHhh
Confidence            999887766

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.89  E-value=1.3e-09  Score=103.35  Aligned_cols=97  Identities=21%  Similarity=0.149  Sum_probs=85.4

Q ss_pred             HHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCC-CCCCHHHHHHHcCcHHHHHHHHHhCCc
Q 046832           36 FVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGP-EKNTPLHCAAIKGKVHVLSEMLSACPE  114 (328)
Q Consensus        36 ~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~-~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  114 (328)
                      +-.++-+.+.+..+.+|..|+|+||+|+..|..+++++|+++|.++ ..+|. .|+||||-|+..|+.|++-.|+++|..
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLSKGRS  111 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence            3445566677888999999999999999999999999999999999 77776 499999999999999999999999976


Q ss_pred             ccccccCCCCCHHHHHHHcC
Q 046832          115 CIEDVTIQHDTALHLAIKNN  134 (328)
Q Consensus       115 ~~~~~~~~g~t~Lh~A~~~~  134 (328)
                       ....|++|..||..-++-.
T Consensus       112 -L~i~Dkeglsplq~~~r~~  130 (1267)
T KOG0783|consen  112 -LRIKDKEGLSPLQFLSRVL  130 (1267)
T ss_pred             -eEEecccCCCHHHHHhhcc
Confidence             8999999999999887743

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.82  E-value=5.5e-09  Score=95.39  Aligned_cols=97  Identities=21%  Similarity=0.291  Sum_probs=88.7

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCC-CcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCH
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRP-DLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTP   92 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp   92 (328)
                      +-.++.+..|.||+|+..|+-|+|+++++++| ++.+..|+.|.|+||-|+..++..++++|++.|+.+ ...|..|.||
T Consensus       892 ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl-~ktd~kg~tp  970 (1004)
T KOG0782|consen  892 LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASL-RKTDSKGKTP  970 (1004)
T ss_pred             eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhh-eecccCCCCh
Confidence            34678888999999999999999999999997 456777899999999999999999999999999999 8899999999


Q ss_pred             HHHHHHcCcHHHHHHHHHh
Q 046832           93 LHCAAIKGKVHVLSEMLSA  111 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~  111 (328)
                      -.-|-+.|+.++..+|-++
T Consensus       971 ~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  971 QERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHhcCCchHHHHHhhh
Confidence            9999999999999888654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.80  E-value=6.3e-09  Score=58.35  Aligned_cols=28  Identities=32%  Similarity=0.604  Sum_probs=21.3

Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHHcCccc
Q 046832           54 DGFSPMHIASSIGHTGVVRELLKVEQKL   81 (328)
Q Consensus        54 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~   81 (328)
                      +|+||||+||+.|+.+++++|+++|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4777777777777777777777777765

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.79  E-value=2.6e-08  Score=89.73  Aligned_cols=95  Identities=19%  Similarity=0.184  Sum_probs=84.7

Q ss_pred             ccCCCCCcH------HHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCC
Q 046832           50 EVNQDGFSP------MHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH  123 (328)
Q Consensus        50 ~~d~~g~tp------Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g  123 (328)
                      .+|.+|.|.      ||-.++.|+.+..-.||..|++....-...|.||||.|++.|+.--+++|+-+|++ +...|.+|
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~d~~G  200 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-PGAQDSSG  200 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-CCCCCCCC
Confidence            356677664      99999999999999999999999666667799999999999999999999999999 89999999


Q ss_pred             CCHHHHHHHcCChhhHHHHHHh
Q 046832          124 DTALHLAIKNNQFEAITVLVNW  145 (328)
Q Consensus       124 ~t~Lh~A~~~~~~~~~~~Ll~~  145 (328)
                      +||+.+|-..||-++.+-|++.
T Consensus       201 mtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHHHH
Confidence            9999999999999888888764

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.75  E-value=1.3e-08  Score=58.71  Aligned_cols=32  Identities=34%  Similarity=0.625  Sum_probs=20.8

Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHHcCccccccCC
Q 046832           54 DGFSPMHIASSIGHTGVVRELLKVEQKLCHQQG   86 (328)
Q Consensus        54 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~   86 (328)
                      +|+||||+|+..|+.+++++|+++|+++ +.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI-NARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT-TCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC-CCCC
Confidence            4666777777777777777777766666 4443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.69  E-value=4.6e-08  Score=89.11  Aligned_cols=90  Identities=24%  Similarity=0.393  Sum_probs=72.9

Q ss_pred             hHHHHHHHcCCHHHHHH-HHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCc
Q 046832           23 NPLHVASAYGHVDFVKE-IINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGK  101 (328)
Q Consensus        23 t~Lh~A~~~g~~~~v~~-Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~  101 (328)
                      -|+|+++.....+-... |..+-....+.+|..|.||||+|+..|+.+.++.|+..|+++ ..++++|++|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCC
Confidence            35899888777665554 333333445778889999999999999999999999999998 8899999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 046832          102 VHVLSEMLSACP  113 (328)
Q Consensus       102 ~~~v~~Ll~~~~  113 (328)
                      .+++..++.+..
T Consensus       101 ~q~i~~vlr~~~  112 (560)
T KOG0522|consen  101 EQIITEVLRHLK  112 (560)
T ss_pred             HHHHHHHHHHhH
Confidence            988888877643

>PF13606 Ank_3: Ankyrin repeat

Probab=98.62  E-value=5e-08  Score=54.67  Aligned_cols=28  Identities=29%  Similarity=0.614  Sum_probs=26.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCc
Q 046832           20 RKGNPLHVASAYGHVDFVKEIINVRPDL   47 (328)
Q Consensus        20 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~   47 (328)
                      +|+||||+||+.|+.|++++|+++++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            5899999999999999999999999887

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.56  E-value=1e-07  Score=54.91  Aligned_cols=32  Identities=31%  Similarity=0.526  Sum_probs=29.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCcccccC
Q 046832           20 RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVN   52 (328)
Q Consensus        20 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d   52 (328)
                      +|.||||+|+..|+.++++.|+++|.++ +.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI-NARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT-TCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC-CCCC
Confidence            5899999999999999999999999988 5554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.54  E-value=2.4e-07  Score=85.11  Aligned_cols=87  Identities=16%  Similarity=0.154  Sum_probs=53.3

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCC--cc-cccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCc
Q 046832           25 LHVASAYGHVDFVKEIINVRPD--LA-HEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGK  101 (328)
Q Consensus        25 Lh~A~~~g~~~~v~~Ll~~~~~--~~-~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~  101 (328)
                      |..|....++..+-.|+.+|..  +. ...+.+|+|+||+||+.|++.+.++|+-+|.|+ ..+|.+|+|+|.+|-+.|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhccc
Confidence            4445555566666666665532  11 122445666777777767666666666666666 6666666666666666666


Q ss_pred             HHHHHHHHHhC
Q 046832          102 VHVLSEMLSAC  112 (328)
Q Consensus       102 ~~~v~~Ll~~~  112 (328)
                      .|++..|+.+|
T Consensus       707 qec~d~llq~g  717 (749)
T KOG0705|consen  707 QECIDVLLQYG  717 (749)
T ss_pred             HHHHHHHHHcC
Confidence            66666666654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.52  E-value=1.6e-07  Score=85.67  Aligned_cols=69  Identities=26%  Similarity=0.490  Sum_probs=62.8

Q ss_pred             HHHHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCcc
Q 046832           11 IFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQK   80 (328)
Q Consensus        11 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~   80 (328)
                      ...++.+|..|+||||+|+..|+.+.++.|+..++++ ..+|.+|++|||.|+..|+.+++..++.+-..
T Consensus        45 ~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~~~  113 (560)
T KOG0522|consen   45 SLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGNEQIITEVLRHLKY  113 (560)
T ss_pred             hceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCCHHHHHHHHHHhHH
Confidence            3467889999999999999999999999999999998 88999999999999999999999888876543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.40  E-value=1.1e-06  Score=80.96  Aligned_cols=90  Identities=21%  Similarity=0.110  Sum_probs=68.5

Q ss_pred             HHHHHHCCCHHHHHHHHHcCccc---cccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCC
Q 046832           59 MHIASSIGHTGVVRELLKVEQKL---CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQ  135 (328)
Q Consensus        59 Lh~Aa~~g~~~iv~~Ll~~~~~~---~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~  135 (328)
                      |--|+...++..+-.||.+|...   ....+.+|+|+||+||..|++.+.++|+-++.+ +..+|.+|+|+|.||-+.|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d-v~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD-VMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc-ceecccCCchhhhhHhhccc
Confidence            34455666677777788877543   123455678888888888888888888888877 78888888888888888888


Q ss_pred             hhhHHHHHHhhhcC
Q 046832          136 FEAITVLVNWIRGM  149 (328)
Q Consensus       136 ~~~~~~Ll~~~~~~  149 (328)
                      .|+++.|+.+|...
T Consensus       707 qec~d~llq~gcp~  720 (749)
T KOG0705|consen  707 QECIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHHHcCCCc
Confidence            88888888876543

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.37  E-value=1.4e-06  Score=83.93  Aligned_cols=125  Identities=18%  Similarity=0.139  Sum_probs=100.8

Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHhcCCC---cccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHH
Q 046832           18 ALRKGNPLHVASAYGHVDFVKEIINVRPD---LAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLH   94 (328)
Q Consensus        18 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh   94 (328)
                      ...++--...|+..|+.-.|+..++....   ..|..|.-|+++||.|..+.|.++.++|++++...        ..+|.
T Consensus        22 l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL   93 (822)
T KOG3609|consen   22 LNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALL   93 (822)
T ss_pred             cchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHH
Confidence            44455667889999999999999986543   33678999999999999999999999999986543        45899


Q ss_pred             HHHHcCcHHHHHHHHHhCCcc---------cccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCc
Q 046832           95 CAAIKGKVHVLSEMLSACPEC---------IEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMK  150 (328)
Q Consensus        95 ~Aa~~g~~~~v~~Ll~~~~~~---------~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~  150 (328)
                      +|+..|..+.|+.++.+....         ....-..+.||+.+|+..+|.||+++|+..+....
T Consensus        94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            999999999999999865431         11222346799999999999999999999766543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.26  E-value=7.2e-07  Score=87.63  Aligned_cols=125  Identities=13%  Similarity=0.018  Sum_probs=79.4

Q ss_pred             ccCCCCCcHHHHHHHCCCHHHHHHHHHc-CccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHH
Q 046832           50 EVNQDGFSPMHIASSIGHTGVVRELLKV-EQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALH  128 (328)
Q Consensus        50 ~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh  128 (328)
                      .....|+|.+|+++..++...++.+++- +... ...|.+|...+|. |..++.+..-+++......++.+|.+||||||
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccc
Confidence            3445677777777777777777777764 3322 4455566666666 44455555555555444446777777777777


Q ss_pred             HHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh
Q 046832          129 LAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK  176 (328)
Q Consensus       129 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~  176 (328)
                      +|+..|+.+++..|++.++....-.+++..+-.|-|+-.+|..+|+..
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~g  694 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKG  694 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccc
Confidence            777777777777777666555444455556666777777777666655

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.21  E-value=3.3e-06  Score=74.11  Aligned_cols=75  Identities=25%  Similarity=0.317  Sum_probs=61.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcC
Q 046832           23 NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKG  100 (328)
Q Consensus        23 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g  100 (328)
                      --|..||+.|+.+.+++|++.|.++ |..|+...+||.+|+-.||.++||+||++|+-. ..-.-+|.-. |+++.+.
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC-~YgaLnd  112 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRC-HYGALND  112 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchh-hhhhhhH
Confidence            3589999999999999999999888 999999999999999999999999999999864 3333345444 5555543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.21  E-value=1.9e-06  Score=84.83  Aligned_cols=130  Identities=17%  Similarity=0.105  Sum_probs=102.2

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHH-cCccccccCCCCCCCH
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK-VEQKLCHQQGPEKNTP   92 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~-~~~~~~~~~~~~g~tp   92 (328)
                      ....+..|.|.+|.++..++.-+++.+++.-.......|.+|.--+|+ |..++.+..-+++. .|..+ +.+|.+|+||
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai-~i~D~~G~tp  644 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAI-DIRDRNGWTP  644 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeeccccc-ccccCCCCcc
Confidence            345677899999999999999999999997223336678888888888 55555666655554 45555 9999999999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCccc-----ccccCCCCCHHHHHHHcCChhhHHHHHHh
Q 046832           93 LHCAAIKGKVHVLSEMLSACPECI-----EDVTIQHDTALHLAIKNNQFEAITVLVNW  145 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~~~-----~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~  145 (328)
                      ||+|+.+|+..++..|++.+++..     ...+..|.|+-..|-.+|+..+..+|-+.
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999999998776532     22334588999999999999999888663

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.21  E-value=2e-06  Score=84.76  Aligned_cols=84  Identities=21%  Similarity=0.340  Sum_probs=43.0

Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHc
Q 046832           54 DGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKN  133 (328)
Q Consensus        54 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  133 (328)
                      .|.|+||.|+..|...++++|++.|+++ +..|..|.+|+|.+...|+...+..+++++++ .+..+.+|.+|+++|...
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~-~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLKRGAD-PNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhcccccc-ccccCccCcchhhHHhhh
Confidence            3455555555555555555555555554 55555555555555555555555555554444 444555555555555444


Q ss_pred             CChhhH
Q 046832          134 NQFEAI  139 (328)
Q Consensus       134 ~~~~~~  139 (328)
                      .+.+++
T Consensus       733 ~~~d~~  738 (785)
T KOG0521|consen  733 ANADIV  738 (785)
T ss_pred             ccccHH
Confidence            333333

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.20  E-value=4.1e-06  Score=66.84  Aligned_cols=63  Identities=13%  Similarity=0.118  Sum_probs=35.4

Q ss_pred             cccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHh
Q 046832           49 HEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSA  111 (328)
Q Consensus        49 ~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~  111 (328)
                      +.+|..|||||++|+..|+.+.+.+|+.+|..-....|..|.+++.+|-+.|..++++.|.+.
T Consensus         6 n~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    6 NARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             cchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            455555555555555555555555555555222255555555555555555555555555554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.20  E-value=1.4e-06  Score=85.90  Aligned_cols=91  Identities=23%  Similarity=0.311  Sum_probs=82.3

Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHH
Q 046832           18 ALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAA   97 (328)
Q Consensus        18 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa   97 (328)
                      -..|.|+||.|+..|..-+++.|++.+.++ +..|..|+||||.+...|+...+..|+++|++. +..+.+|.+|+++|.
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~-~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLKRGADP-NAFDPDGKLPLDIAM  730 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhccccccc-cccCccCcchhhHHh
Confidence            346789999999999999999999999996 999999999999999999999999999999999 999999999999998


Q ss_pred             HcCcHHHHHHHHH
Q 046832           98 IKGKVHVLSEMLS  110 (328)
Q Consensus        98 ~~g~~~~v~~Ll~  110 (328)
                      ...+.+++-.+..
T Consensus       731 ~~~~~d~~~l~~l  743 (785)
T KOG0521|consen  731 EAANADIVLLLRL  743 (785)
T ss_pred             hhccccHHHHHhh
Confidence            8777666655433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.06  E-value=9.1e-06  Score=64.91  Aligned_cols=69  Identities=12%  Similarity=0.147  Sum_probs=63.3

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccc
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL   81 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~   81 (328)
                      .+|.+|..|+|+|+.|+..|+.+.+.+|+.+|...+...|..|.+++.+|-+.|+.++++.|-+...+-
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            468899999999999999999999999999996666999999999999999999999999999875543

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.03  E-value=0.0014  Score=63.77  Aligned_cols=94  Identities=16%  Similarity=0.127  Sum_probs=79.3

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCcccc---------c
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC---------H   83 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~---------~   83 (328)
                      .+|++|.-|+++|+.|+.+.+.|+++.|+++..+.        ..+|-+|+..|..+.|+.++.+.....         .
T Consensus        54 ninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~  125 (822)
T KOG3609|consen   54 NINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANS  125 (822)
T ss_pred             chhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCc
Confidence            46889999999999999999999999999976554        348999999999999999998754331         1


Q ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHHhCCc
Q 046832           84 QQGPEKNTPLHCAAIKGKVHVLSEMLSACPE  114 (328)
Q Consensus        84 ~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  114 (328)
                      ..-..+.||+.+||..++.|+++.|+.++..
T Consensus       126 ~~ft~ditPliLAAh~NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen  126 PHFTPDITPLMLAAHLNNFEILQCLLTRGHC  156 (822)
T ss_pred             ccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence            2233578999999999999999999998876

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.78  E-value=6.9e-05  Score=66.07  Aligned_cols=84  Identities=23%  Similarity=0.320  Sum_probs=65.8

Q ss_pred             CCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCC
Q 046832           45 PDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD  124 (328)
Q Consensus        45 ~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~  124 (328)
                      +.+....+.  .--|..||+.|+.+.|++|++.|.++ |..|+...+||.+|+..||.+++++|+++|+.|-.. ..+|.
T Consensus        28 ~s~~~~~~~--f~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rd-tf~G~  103 (516)
T KOG0511|consen   28 PSVPLKKVP--FGELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRD-TFDGD  103 (516)
T ss_pred             cccccccCc--hHHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcCCccccc-ccCcc
Confidence            444333333  34589999999999999999999998 999999999999999999999999999999985433 23444


Q ss_pred             CHHHHHHHc
Q 046832          125 TALHLAIKN  133 (328)
Q Consensus       125 t~Lh~A~~~  133 (328)
                      .. |+++.+
T Consensus       104 RC-~YgaLn  111 (516)
T KOG0511|consen  104 RC-HYGALN  111 (516)
T ss_pred             hh-hhhhhh
Confidence            33 344433

>smart00248 ANK ankyrin repeats

Probab=97.10  E-value=0.00088  Score=35.90  Aligned_cols=26  Identities=35%  Similarity=0.561  Sum_probs=15.7

Q ss_pred             CCcHHHHHHHCCCHHHHHHHHHcCcc
Q 046832           55 GFSPMHIASSIGHTGVVRELLKVEQK   80 (328)
Q Consensus        55 g~tpLh~Aa~~g~~~iv~~Ll~~~~~   80 (328)
                      |.||+|+|+..|+.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            45666666666666666666665543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.91  E-value=0.002  Score=59.03  Aligned_cols=63  Identities=14%  Similarity=0.074  Sum_probs=46.4

Q ss_pred             HHHHHHHHhcCCCcc-----cccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHH
Q 046832           34 VDFVKEIINVRPDLA-----HEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAA   97 (328)
Q Consensus        34 ~~~v~~Ll~~~~~~~-----~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa   97 (328)
                      .+.+++|.+++.+.+     ...+.--.|+||+|+..|..++|.+||+.|+|+ ..+|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDP-STKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCc-hhcccCCCCcccccc
Confidence            455666666654431     122344578899999999999999999988887 888888999988877

>smart00248 ANK ankyrin repeats

Probab=96.86  E-value=0.002  Score=34.42  Aligned_cols=28  Identities=29%  Similarity=0.580  Sum_probs=25.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCc
Q 046832           20 RKGNPLHVASAYGHVDFVKEIINVRPDL   47 (328)
Q Consensus        20 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~   47 (328)
                      +|.||+|+|+..|+.++++.|++.+.+.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            4789999999999999999999988754

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.99  E-value=0.008  Score=55.25  Aligned_cols=64  Identities=16%  Similarity=0.102  Sum_probs=48.9

Q ss_pred             HHHHHHHHHhCCcc-----cccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhh
Q 046832          102 VHVLSEMLSACPEC-----IEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATR  171 (328)
Q Consensus       102 ~~~v~~Ll~~~~~~-----~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~  171 (328)
                      ...++.|.+++...     ....+..--|+||+|+.+|..+++.++++      .|+|+..+|..|+||..++..
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Le------eg~Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLE------EGCDPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHH------hcCCchhcccCCCCccccccc
Confidence            45566666654431     12233335599999999999999999998      678999999999999999873

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.04  E-value=0.13  Score=42.80  Aligned_cols=113  Identities=15%  Similarity=0.136  Sum_probs=65.5

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCc----cccccCCCCCCCHHHHHHH--
Q 046832           25 LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQ----KLCHQQGPEKNTPLHCAAI--   98 (328)
Q Consensus        25 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~----~~~~~~~~~g~tpLh~Aa~--   98 (328)
                      |--|+..-+.+.+..++....+        -.+++-+|...+..+++.+|+..-.    ++....  .+..-+.++-.  
T Consensus       157 ledAV~AsN~~~i~~~VtdKkd--------A~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~--~~~ydieY~LS~h  226 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDKKD--------AHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASME--KELYDIEYLLSEH  226 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcchHH--------HHHHHHHHhcccHHHHHHHHHhhcceecchhhhcC--cchhhHHHHHhhc
Confidence            4556666666666555553332        2567778887888888888887531    211111  12223333322  


Q ss_pred             cCcHHHHHHHHHhCCccccc---ccCCCCCHHHHHHHcCChhhHHHHHHhhh
Q 046832           99 KGKVHVLSEMLSACPECIED---VTIQHDTALHLAIKNNQFEAITVLVNWIR  147 (328)
Q Consensus        99 ~g~~~~v~~Ll~~~~~~~~~---~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~  147 (328)
                      ..+..+++.++++|-..++.   +-+.|.|-|.-|+++++.|++.+|+++|+
T Consensus       227 ~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  227 SASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             CCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            33456777777776543332   33567777777777777777777777543

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.33  E-value=0.74  Score=37.25  Aligned_cols=43  Identities=23%  Similarity=0.250  Sum_probs=25.9

Q ss_pred             HHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHH
Q 046832           94 HCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLV  143 (328)
Q Consensus        94 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll  143 (328)
                      ..|+.+|-...+.+.++.|++ ++      .++|..|+++++.+++.+++
T Consensus       148 ~~a~~kgll~F~letlkygg~-~~------~~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  148 EKAAAKGLLPFVLETLKYGGN-VD------IIVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHCCCHHHHHHHHHcCCc-cc------HHHHHHHHHhhHHHHHHHhh
Confidence            456666666666666666654 11      15666666666666666654

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=91.32  E-value=0.4  Score=33.06  Aligned_cols=46  Identities=11%  Similarity=0.097  Sum_probs=21.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHc
Q 046832           24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKV   77 (328)
Q Consensus        24 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~   77 (328)
                      .+..|+..|+.|+++.+++.+ ..    +   ...+..|+...+-+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~----~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KP----D---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-cc----H---HHHHHHHHHHhhHHHHHHHHHh
Confidence            344555555555555555432 11    0   2345555555555555555543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=89.03  E-value=2.2  Score=35.76  Aligned_cols=91  Identities=11%  Similarity=0.016  Sum_probs=65.7

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcC----CCcccccCCCCCcHHHHHHH--CCCHHHHHHHHHcCcccc---ccCCCCCCCH
Q 046832           22 GNPLHVASAYGHVDFVKEIINVR----PDLAHEVNQDGFSPMHIASS--IGHTGVVRELLKVEQKLC---HQQGPEKNTP   92 (328)
Q Consensus        22 ~t~Lh~A~~~g~~~~v~~Ll~~~----~~~~~~~d~~g~tpLh~Aa~--~g~~~iv~~Ll~~~~~~~---~~~~~~g~tp   92 (328)
                      .+++-+|+..+..+++-+|+.+-    .++....  .+.--+-++.+  ..+..++++++++|-...   -.+-+.|.|-
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~--~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM  257 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASME--KELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM  257 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecchhhhcC--cchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence            47888999999999999999853    2221111  12223444443  345788999999884332   3355679999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCc
Q 046832           93 LHCAAIKGKVHVLSEMLSACPE  114 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~  114 (328)
                      |.-|.+.++.+++..|+++|+.
T Consensus       258 LDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  258 LDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHhHHhcCcHHHHHHHHHcCcc
Confidence            9999999999999999999985

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.46  E-value=1.1  Score=30.89  Aligned_cols=48  Identities=15%  Similarity=0.088  Sum_probs=30.3

Q ss_pred             cHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhC
Q 046832           57 SPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSAC  112 (328)
Q Consensus        57 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~  112 (328)
                      ..+..|+..|+.|+++..++.+...        ...+..|+..-+-+++++|++..
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~~--------~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKPD--------NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhccH--------HHHHHHHHHHhhHHHHHHHHHhc
Confidence            3466777777777777766543111        33567777777777777777653

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.71  E-value=3.9  Score=28.31  Aligned_cols=47  Identities=23%  Similarity=0.272  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhcc
Q 046832          256 FMFFNSLGFKLSIYMIIILTTKFPLQLGLQLCFLAMYFTYDTAVIATT  303 (328)
Q Consensus       256 F~~~~~~a~~~S~~~~~~l~~~~~~~~~~~~~~~~m~~af~~~~~~~~  303 (328)
                      ++++|..||-.|..++.+-++-.|..+.. =++.+|-+.|.+|..+.+
T Consensus        16 wi~f~waafg~s~~m~~~gi~~lPVD~w~-KGy~~MG~lfltgSt~tL   62 (95)
T COG4298          16 WIMFNWAAFGASYFMLGLGIWLLPVDLWT-KGYWAMGILFLTGSTVTL   62 (95)
T ss_pred             hHhHHHHHHHHHHHHHHHHhheechHHHH-HHHHHHHHHHHhcchhhh
Confidence            56788899999999988888878876543 245678888888865433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	328
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-09
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		6e-09
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-08
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-07
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-07
1uoh_A	226	Human Gankyrin Length = 226		2e-07
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-07
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		9e-07
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-06
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-04
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-04
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-06
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-06
2xee_A	157	Structural Determinants For Improved Thermal Stabil		5e-06
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		9e-06
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-05
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-05
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-05
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-05
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		4e-05
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		4e-05
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		4e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		6e-05
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-05
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		7e-05
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		8e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		7e-05
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-04
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		8e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		8e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		9e-05
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-04
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-04
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		8e-04
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-04
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-04
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-04
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		2e-04
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-04
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-04
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		8e-04
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-04
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-04
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-04
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		4e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		5e-04
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		6e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 92/181 (50%), Gaps = 21/181 (11%)
Query: 24  PLHVASAYGHVDFVKEII--NVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
           PLHVAS  GH+  VK ++     P+++   N    +P+H+A+  GHT V + LL+ + K+
Sbjct: 17  PLHVASFMGHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQNKAKV 73
Query: 82  CHQQGPEKNTPLHCAAIKGKVHVLSEML--SACPECIEDVTIQHDTALHLAIKNNQFEAI 139
            + +  +  TPLHCAA  G  +++  +L  +A P      T    T LH+A +    E +
Sbjct: 74  -NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL---ATTAGHTPLHIAAREGHVETV 129
Query: 140 TVLVNWIRGMKREEIFNMKDEQGNTVLHLATR--KKQRKELLLGHGTY--SSGRLELIAL 195
             L      +++E       ++G T LH+A +  K +  ELLL    +  ++G+  L  L
Sbjct: 130 LAL------LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPL 183
Query: 196 H 196
           H
Sbjct: 184 H 184

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH+A+  GH++ VK ++    D+ +  +++G +P+H+A+  GH  VV+ LL+    +  
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-- 61
Query: 84  QQGPEKN--TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITV 141
               +KN  TPLH AA  G + V+  +L A  + +        T LHLA +N   E + +
Sbjct: 62  -NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 142 LV 143
           L+
Sbjct: 120 LL 121

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 14/136 (10%)
Query: 54  DGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN--TPLHCAAIKGKVHVLSEMLSA 111
           +G +P+H+A+  GH  VV+ LL+    +      +KN  TPLH AA  G + V+  +L A
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 112 CPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATR 171
             + +        T LHLA +N   E + +L      ++     N KD+ G T LHLA R
Sbjct: 58  GAD-VNAKDKNGRTPLHLAARNGHLEVVKLL------LEAGADVNAKDKNGRTPLHLAAR 110
Query: 172 KKQRK--ELLLGHGTY 185
               +  +LLL  G Y
Sbjct: 111 NGHLEVVKLLLEAGAY 126

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 21/159 (13%)
Query: 25  LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQ 84
           LH A + GH + V+ ++ +   + ++ +  G+SP+HIA+S G   +V+ LL    K  H 
Sbjct: 44  LHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEIVKALL---VKGAHV 99
Query: 85  QGPEKN--TPLHCAAIKGKVHVLSEML---SACPECIEDVTIQHD-TALHLAIKNNQFEA 138
               +N  TPLH AA K + H ++ ML    A P    D    +D TA+H A      + 
Sbjct: 100 NAVNQNGCTPLHYAASKNR-HEIAVMLLEGGANP----DAKDHYDATAMHRAAAKGNLKM 154
Query: 139 ITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKE 177
           + +L+ +      +   N++D +GNT LHLA  +++ +E
Sbjct: 155 VHILLFY------KASTNIQDTEGNTPLHLACDEERVEE 187

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 21/167 (12%)
Query: 25  LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK--VEQKLC 82
           LH A + GH + V+ ++ +   + ++ +  G+SP+HIA+S G   +V+ LL    +    
Sbjct: 45  LHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 103
Query: 83  HQQGPEKNTPLHCAAIKGKVHVLSEML---SACPECIEDVTIQHDTALHLAIKNNQFEAI 139
           +Q G    TPLH AA K + H ++ ML    A P+  +       TA+H A      + I
Sbjct: 104 NQNGC---TPLHYAASKNR-HEIAVMLLEGGANPDAKDHYEA---TAMHRAAAKGNLKMI 156
Query: 140 TVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKE--LLLGHGT 184
            +L+ +      +   N++D +GNT LHLA  +++ +E  LL+  G 
Sbjct: 157 HILLYY------KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 197

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 21/167 (12%)
Query: 25  LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK--VEQKLC 82
           LH A + GH + V+ ++ +   + ++ +  G+SP+HIA+S G   +V+ LL    +    
Sbjct: 44  LHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 102
Query: 83  HQQGPEKNTPLHCAAIKGKVHVLSEML---SACPECIEDVTIQHDTALHLAIKNNQFEAI 139
           +Q G    TPLH AA K + H ++ ML    A P+  +       TA+H A      + I
Sbjct: 103 NQNGC---TPLHYAASKNR-HEIAVMLLEGGANPDAKDHYEA---TAMHRAAAKGNLKMI 155
Query: 140 TVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKE--LLLGHGT 184
            +L+ +      +   N++D +GNT LHLA  +++ +E  LL+  G 
Sbjct: 156 HILLYY------KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 196

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 21/159 (13%)
Query: 25  LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQ 84
           LH A + GH + V+ ++ +   + ++ +  G+SP+HIA+S G   +V+ LL    K  H 
Sbjct: 44  LHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALL---VKGAHV 99
Query: 85  QGPEKN--TPLHCAAIKGKVHVLSEML---SACPECIEDVTIQHD-TALHLAIKNNQFEA 138
               +N  TPLH AA K + H ++ ML    A P    D    +D TA+H A      + 
Sbjct: 100 NAVNQNGCTPLHYAASKNR-HEIAVMLLEGGANP----DAKDHYDATAMHRAAAKGNLKM 154
Query: 139 ITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKE 177
           + +L+ +      +   N++D +GNT LHLA  +++ +E
Sbjct: 155 VHILLFY------KASTNIQDTEGNTPLHLACDEERVEE 187

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 15/154 (9%)
Query: 22  GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
           G  L  A+  G  D V+ ++    D+ +  ++DG++P+H+A+  GH  +V  LLK    +
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 82  CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD---TALHLAIKNNQFEA 138
            + +  +  TPLH AA +G + ++  +L A      DV  +     T LHLA +    E 
Sbjct: 62  -NAKDKDGYTPLHLAAREGHLEIVEVLLKAGA----DVNAKDKDGYTPLHLAAREGHLEI 116
Query: 139 ITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK 172
           + VL      +K     N +D+ G T   LA R+
Sbjct: 117 VEVL------LKAGADVNAQDKFGKTPFDLAIRE 144

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH+A+  GH++ VK ++    D+  + +++G +P+H+A+  GH  VV+ LL+    +  
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV-- 61
Query: 84  QQGPEKN--TPLHCAAIKGKVHVLSEMLSA 111
               +KN  TPLH AA  G + V+  +L A
Sbjct: 62  -NAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 54  DGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN--TPLHCAAIKGKVHVLSEMLSA 111
           +G +P+H+A+  GH  VV+ LL+    +      +KN  TPLH AA  G + V+  +L A
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 112 CPECIEDVTIQHDTALHLAIKNNQFEAITVLV 143
             + +        T LHLA +N   E + +L+
Sbjct: 58  GAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 91  TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMK 150
           TPLH AA  G + V+  +L A  + +        T LHLA +N   E + +L      ++
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLL------LE 56
Query: 151 REEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTY 185
                N KD+ G T LHLA R    +  +LLL  G Y
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 27/151 (17%)
Query: 28  ASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGP 87
           A+  G+ D VK+++    D+ +  + DG +P+H+A+  GH  VV+ LL         QG 
Sbjct: 11  AAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLL--------SQGA 61
Query: 88  EKN-------TPLHCAAIKGKVHVLSEMLS--ACPECIEDVTIQHDTALHLAIKNNQFEA 138
           + N       TPLH AA  G   V+  +LS  A P   +       T LHLA +N   E 
Sbjct: 62  DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD---SDGKTPLHLAAENGHKEV 118
Query: 139 ITVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
           + +L      + +    N  D  G T L LA
Sbjct: 119 VKLL------LSQGADPNTSDSDGRTPLDLA 143

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH+A+A GH++ V+ ++    D+ + V+ +G +P+H+A+S+GH  +V  LLK    + +
Sbjct: 38  PLHMAAAVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV-N 95
Query: 84  QQGPEKNTPLHCAAIKGKVHVLSEML 109
            +     TPL+ AA  G + ++  +L
Sbjct: 96  AKDATGITPLYLAAYWGHLEIVEVLL 121

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 15/151 (9%)
Query: 22  GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
           G  L  A+  G  D V+ ++    D+ +  ++DG++P+H+A+  GH  +V  LLK    +
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 82  CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD---TALHLAIKNNQFEA 138
            + +  +  TPLH AA +G + ++  +L A      DV  +     T LHLA +    E 
Sbjct: 62  -NAKDKDGYTPLHLAAREGHLEIVEVLLKAGA----DVNAKDKDGYTPLHLAAREGHLEI 116
Query: 139 ITVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
           + VL      +K     N +D+ G T   LA
Sbjct: 117 VEVL------LKAGADVNAQDKFGKTPFDLA 141

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 15/151 (9%)
Query: 22  GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
           G  L  A+  G  D V+ ++    D+ +  ++DG++P+H+A+  GH  +V  LLK    +
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 73
Query: 82  CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD---TALHLAIKNNQFEA 138
            + +  +  TPLH AA +G + ++  +L A      DV  +     T LHLA +    E 
Sbjct: 74  -NAKDKDGYTPLHLAAREGHLEIVEVLLKAGA----DVNAKDKDGYTPLHLAAREGHLEI 128
Query: 139 ITVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
           + VL      +K     N +D+ G T   ++
Sbjct: 129 VEVL------LKAGADVNAQDKFGKTAFDIS 153

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 20  RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQ 79
           RK  PLH+A+ Y  V  V+ ++    D+ H  ++ G  P+H A S GH  V   LLK   
Sbjct: 57  RKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLK-HG 114
Query: 80  KLCHQQGPEKNTPLHCAAIKGKVHVLSEMLS 110
              +     + TPLH AA K +V V S +LS
Sbjct: 115 ACVNAMDLWQFTPLHEAASKNRVEVCSLLLS 145

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 15/151 (9%)
Query: 22  GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
           G  L  A+  G  D V+ ++    D+    +Q G +P+H+A+ IGH  +V  LLK     
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAHDDQ-GSTPLHLAAWIGHPEIVEVLLK-HGAD 72
Query: 82  CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD---TALHLAIKNNQFEA 138
            + +  +  TPLH AA  G + ++  +L        DV  Q     T LHLA      E 
Sbjct: 73  VNARDTDGWTPLHLAADNGHLEIVEVLLKYGA----DVNAQDAYGLTPLHLAADRGHLEI 128
Query: 139 ITVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
           + VL      +K     N +D+ G T   ++
Sbjct: 129 VEVL------LKHGADVNAQDKFGKTAFDIS 153

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 22  GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
           G  L  A+  G  D V+ ++    D+  E +  G +P+H+A+ +GH  +V  LLK     
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAE-DTYGDTPLHLAARVGHLEIVEVLLK----- 68
Query: 82  CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
               G + N       TPLH AA +G + ++  +L    +   D TI   T LHLA    
Sbjct: 69  ---NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGS-TPLHLAADTG 124
Query: 135 QFEAITVLVNWIRGMKREEIF 155
             E + VL+ +   +  ++ F
Sbjct: 125 HLEIVEVLLKYGADVNAQDKF 145

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 15/151 (9%)
Query: 22  GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
           G  L  A+  G+ D VK++I    D+ +  + DG +P+H A+  GH  +V+ LL  +   
Sbjct: 5   GKRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVK-LLISKGAD 62
Query: 82  CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD---TALHLAIKNNQFEA 138
            + +  +  TPLH AA +G   ++  ++S       DV  +     T LH A K    E 
Sbjct: 63  VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA----DVNAKDSDGRTPLHYAAKEGHKEI 118
Query: 139 ITVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
           + +L++  +G       N  D  G T L LA
Sbjct: 119 VKLLIS--KGAD----VNTSDSDGRTPLDLA 143

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 9/122 (7%)
Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH+A+  GH++ V+ ++    D+    N  G +P+H+A+  GH  +V  LLK      +
Sbjct: 50  PLHLAAKTGHLEIVEVLLKYGADVNAWDNY-GATPLHLAADNGHLEIVEVLLK-HGADVN 107
Query: 84  QQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH---DTALHLAIKNNQFEAIT 140
            +  E  TPLH AA  G + ++  +L        DV  Q     TA  ++I N   +   
Sbjct: 108 AKDYEGFTPLHLAAYDGHLEIVEVLLKYGA----DVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 141 VL 142
           +L
Sbjct: 164 IL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 23/155 (14%)
Query: 22  GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
           G  L  A+  G  D V+ ++    D+ +  + DG++P+H+A+S GH  +V  LLK     
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLLK----- 68
Query: 82  CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
               G + N       TPLH AA  G + ++  +L    +        H T LHLA K  
Sbjct: 69  ---NGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGH-TPLHLAAKYG 124
Query: 135 QFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
             E + VL      +K     N +D+ G T   ++
Sbjct: 125 HLEIVEVL------LKHGADVNAQDKFGKTAFDIS 153

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH+A+ +GH++ V+ ++    D+ +  +  G +P+H+A+  GH  +V  LLK    + +
Sbjct: 50  PLHLAAYWGHLEIVEVLLKNGADV-NAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADV-N 107
Query: 84  QQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH---DTALHLAIKNNQFEAIT 140
            +     TPLH AA +G + ++  +L        DV  Q     TA  ++I N   +   
Sbjct: 108 AKDDNGITPLHLAANRGHLEIVEVLLKYGA----DVNAQDKFGKTAFDISINNGNEDLAE 163
Query: 141 VL 142
           +L
Sbjct: 164 IL 165

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 22  GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
           G  L  A+  G  D V+ ++    D+ + +++DG +P+H+A+ +GH  +V  LLK    +
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADV-NALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV 73
Query: 82  CHQQGPEKN---TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH---DTALHLAIKNNQ 135
                 E N   TPLH AAI+G + ++  +L        DV  Q     TA  ++I N  
Sbjct: 74  N----AEDNFGITPLHLAAIRGHLEIVEVLLKHGA----DVNAQDKFGKTAFDISIDNGN 125
Query: 136 FEAITVL 142
            +   +L
Sbjct: 126 EDLAEIL 132

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 11/143 (7%)
Query: 28  ASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGP 87
           A+  G+ D VK++I    D+ +  + DG +P+H A+  GH  VV+ LL  +    + +  
Sbjct: 11  AAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVK-LLISKGADVNAKDS 68
Query: 88  EKNTPLHCAAIKGKVHVLSEMLSACPEC-IEDVTIQHDTALHLAIKNNQFEAITVLVNWI 146
           +  TPLH AA  G   V+  ++S   +   +D   +  T LH A +N   E + +L++  
Sbjct: 69  DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR--TPLHHAAENGHKEVVKLLIS-- 124
Query: 147 RGMKREEIFNMKDEQGNTVLHLA 169
           +G       N  D  G T L LA
Sbjct: 125 KGAD----VNTSDSDGRTPLDLA 143

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 16/93 (17%)
Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH+A+A G ++ V+ ++    D+ +  +  G +P+H+A+  GH  +V  LLK       
Sbjct: 42  PLHLAAANGQLEIVEVLLKNGADV-NASDSAGITPLHLAAYDGHLEIVEVLLK------- 93
Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEML 109
             G + N       TPLH AA+ G++ ++  +L
Sbjct: 94  -HGADVNAYDRAGWTPLHLAALSGQLEIVEVLL 125

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 23/162 (14%)
Query: 22  GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
           G  L  A+A G  D V+ ++    D+ +  + +G +P+H+A++ G   +V  LLK     
Sbjct: 7   GKKLLEAAAAGQDDEVRILMANGADV-NATDDNGLTPLHLAAANGQLEIVEVLLK----- 60
Query: 82  CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
               G + N       TPLH AA  G + ++  +L    + +        T LHLA  + 
Sbjct: 61  ---NGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD-VNAYDRAGWTPLHLAALSG 116
Query: 135 QFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK 176
           Q E + VL      +K     N +D  G T   ++  + Q  
Sbjct: 117 QLEIVEVL------LKHGADVNAQDALGLTAFDISINQGQED 152

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 20  RKGN-PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVE 78
           + GN PLH A+  GH + VK++++   D+ +  ++DG +P+H+A+  GH  +V+ LL  +
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLL-AK 64
Query: 79  QKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSA 111
               + +  + NTP H A   G  H + ++L A
Sbjct: 65  GADVNARSKDGNTPEHLAKKNGH-HEIVKLLDA 96

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 53  QDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSAC 112
           +DG +P+H A+  GH   V++LL     + + +  + NTPLH AA  G   ++  +L+  
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 113 PECIEDVTIQHDTALHLAIKNNQFEAITVL 142
            + +   +   +T  HLA KN   E + +L
Sbjct: 66  AD-VNARSKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 20  RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQ 79
           R+  PLH A+ Y  V  V+ ++    D+ H  ++ G  P+H A S GH  V  ELL    
Sbjct: 45  RQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVA-ELLVKHG 102
Query: 80  KLCHQQGPEKNTPLHCAAIKGKVHVLSEML 109
            + +     K TPLH AA KGK  +   +L
Sbjct: 103 AVVNVADLWKFTPLHEAAAKGKYEICKLLL 132

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 20  RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQ 79
           R+  PLH A+ Y  V  V+ ++    D+ H  ++ G  P+H A S GH  V  ELL    
Sbjct: 41  RQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVA-ELLVKHG 98
Query: 80  KLCHQQGPEKNTPLHCAAIKGKVHVLSEML 109
            + +     K TPLH AA KGK  +   +L
Sbjct: 99  AVVNVADLWKFTPLHEAAAKGKYEICKLLL 128

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 20  RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQ 79
           R+  PLH A+ Y  V  V+ ++    D+ H  ++ G  P+H A S GH  V  ELL    
Sbjct: 43  RQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVA-ELLVKHG 100
Query: 80  KLCHQQGPEKNTPLHCAAIKGKVHVLSEML 109
            + +     K TPLH AA KGK  +   +L
Sbjct: 101 AVVNVADLWKFTPLHEAAAKGKYEICKLLL 130

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 13/144 (9%)
Query: 28  ASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGP 87
           A+  G+ D VK+++    D  +  + DG +P+H A+  GH  +V+ LL  +    + +  
Sbjct: 11  AAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVK-LLLSKGADPNAKDS 68
Query: 88  EKNTPLHCAAIKGKVHVLSEMLS--ACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNW 145
           +  TPLH AA  G   ++  +LS  A P   +       T LH A +N   E + +L   
Sbjct: 69  DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR---TPLHYAAENGHKEIVKLL--- 122
Query: 146 IRGMKREEIFNMKDEQGNTVLHLA 169
              + +    N  D  G T L LA
Sbjct: 123 ---LSKGADPNTSDSDGRTPLDLA 143

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 8/156 (5%)
Query: 15  KLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVREL 74
           K++   K +PLH A+  GHVD    ++    ++    ++D  +P+  A+   H   V+ L
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 75  LKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
           +K    L   +  E +T LH AA KG   V+  +LS       DV  Q D      I   
Sbjct: 64  IKA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ---MDVNCQDDGGWTPMIWAT 119
Query: 135 QFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLAT 170
           +++ +  LV  +  + +    N++D + N  LH A 
Sbjct: 120 EYKHVD-LVKLL--LSKGSDINIRDNEENICLHWAA 152

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 18/109 (16%)
Query: 80  KLCHQQGPEKNTPLHCAAIKGKV---HVLSEMLSACPECIEDVTIQHDTALHLAIKNNQF 136
           K+ HQ    K +PLH AA  G V   H+L +  +    C ED      T L  A +NN  
Sbjct: 5   KMEHQN---KRSPLHAAAEAGHVDICHMLVQAGANIDTCSED----QRTPLMEAAENNHL 57
Query: 137 EAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
           EA+  L+      K   + + KD +G+T LHLA +K   +  + LL +G
Sbjct: 58  EAVKYLI------KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH+A+  GH++ V+ ++    D+    +  GF+P+H+A+  GH  +V  LLK    + +
Sbjct: 50  PLHLAAVSGHLEIVEVLLKHGADV-DAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV-N 107
Query: 84  QQGPEKNTPLHCAAIKGKVHVLSEML 109
                 +TPLH AA +G + ++  +L
Sbjct: 108 AFDMTGSTPLHLAADEGHLEIVEVLL 133

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 22/163 (13%)
Query: 22  GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
           G  L  A+  G  D V+ +I    D+ + V+  G +P+H+A+  GH  +V  LLK     
Sbjct: 15  GKKLLEAARAGQDDEVRILIANGADV-NAVDNTGLTPLHLAAVSGHLEIVEVLLK----- 68
Query: 82  CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
               G + +       TPLH AA+ G + ++  +L    + +    +   T LHLA    
Sbjct: 69  ---HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD-VNAFDMTGSTPLHLAADEG 124
Query: 135 QFEAITVLVNWIRGMKREE-----IFNMKDEQGNTVLHLATRK 172
             E + VL+ +   +  ++      F++  + GN  L  + R 
Sbjct: 125 HLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAKSCRN 167

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 9/122 (7%)
Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH+A+ +GH++ V+ ++    D+ +  +  G +P+H+A+  GH  +V  LLK    + +
Sbjct: 50  PLHLAAHFGHLEIVEVLLKNGADV-NAKDSLGVTPLHLAARRGHLEIVEVLLKNGADV-N 107
Query: 84  QQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH---DTALHLAIKNNQFEAIT 140
                  TPLH AA +G + ++  +L        DV  Q     TA  ++I N   +   
Sbjct: 108 ASDSHGFTPLHLAAKRGHLEIVEVLLKNGA----DVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 141 VL 142
           +L
Sbjct: 164 IL 165

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 4/59 (6%)
Query: 20  RKGN-PLHVASAYGHVDFVKEIINVRPDL-AHEVNQDGFSPMHIASSIGHTGVVRELLK 76
           RKGN PLH+A+ Y H++ V+ ++    D+ AH+   DG +P+H+A+  GH  +V  LLK
Sbjct: 45  RKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD--NDGSTPLHLAALFGHLEIVEVLLK 101

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK--VEQKL 81
           PLH+    GH++ ++ ++    D+ +  ++ G++P+H+A+  GH  +V  LLK   +   
Sbjct: 50  PLHLVVNNGHLEIIEVLLKYAADV-NASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNA 108
Query: 82  CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH---DTALHLAIKNNQFEA 138
              QG    TPLH AA  G + ++  +L        DV  Q     TA  ++I N   + 
Sbjct: 109 MDYQGY---TPLHLAAEDGHLEIVEVLLKYGA----DVNAQDKFGKTAFDISIDNGNEDL 161
Query: 139 ITVL 142
             +L
Sbjct: 162 AEIL 165

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH A        V+E+++ +P L  + +QDG  P+H + S     +   LL   + +  
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 84  QQGPEKN--TPLHCAAIKGKVHVLSEMLSAC--PECIEDVTIQHDTALHLAIKNNQFEAI 139
              P+ +  TP H A   G + V+  +      P+ +  +T Q  T LHLA+    FE  
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVS 123
Query: 140 TVLVNWIRGMKREEIFN 156
             L+     ++ ++ FN
Sbjct: 124 QFLIENGASVRIKDKFN 140

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH A        V+E+++ +P L  + +QDG  P+H + S     +   LL   + +  
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 84  QQGPEKN--TPLHCAAIKGKVHVLSEMLSAC--PECIEDVTIQHDTALHLAIKNNQFEAI 139
              P+ +  TP H A   G + V+  +      P+ +  +T Q  T LHLA+    FE  
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVS 123
Query: 140 TVLVNWIRGMKREEIFN 156
             L+     ++ ++ FN
Sbjct: 124 QFLIENGASVRIKDKFN 140

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH A        V+E+++ +P L  + +QDG  P+H + S     +   LL   + +  
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 84  QQGPEKN--TPLHCAAIKGKVHVLSEMLSAC--PECIEDVTIQHDTALHLAIKNNQFEAI 139
              P+ +  TP H A   G + V+  +      P+ +  +T Q  T LHLA+    FE  
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVS 123
Query: 140 TVLVNWIRGMKREEIFN 156
             L+     ++ ++ FN
Sbjct: 124 QFLIENGASVRIKDKFN 140

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 23/150 (15%)
Query: 22  GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
           G  L  A+  G  D V+ ++    D+ +  +  G +P+H+A++ GH  +V  LLK     
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLK----- 68
Query: 82  CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
               G + N       TPLH AA+ G + ++  +L    + +  V    DT LHLA    
Sbjct: 69  ---HGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD-VNAVDTWGDTPLHLAAIMG 124
Query: 135 QFEAITVLVNWIRGMKREEIFNMKDEQGNT 164
             E + VL      +K     N +D+ G T
Sbjct: 125 HLEIVEVL------LKHGADVNAQDKFGKT 148

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK 76
           PLH+A+ YGH++ V+ ++    D+ +  +  GF+P+H+A+  GH  +V  LLK
Sbjct: 83  PLHLAALYGHLEIVEVLLKNGADV-NATDTYGFTPLHLAADAGHLEIVEVLLK 134

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 23/129 (17%)
Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH+A+  GH++ V+ ++    D+ +  ++ G +P+H+A+  GH  +V  LLK       
Sbjct: 50  PLHLAAIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEVLLK------- 101
Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH---DTALHLAIKN 133
             G + N       TPLH AA  G + ++  +L        DV  Q     TA  ++I N
Sbjct: 102 -NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA----DVNAQDKFGKTAFDISIDN 156
Query: 134 NQFEAITVL 142
              +   +L
Sbjct: 157 GNEDLAEIL 165

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK 76
           PLH+A+  GH++ V+ ++    D+ +  + +GF+P+H+A++IGH  +V  LLK
Sbjct: 83  PLHLAADRGHLEVVEVLLKNGADV-NANDHNGFTPLHLAANIGHLEIVEVLLK 134

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 23/155 (14%)
Query: 22  GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
           G  L  A+  G  D V+ ++    D+ +  +  G +P+H+A++ GH  +V  LLK     
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLK----- 68
Query: 82  CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
               G + N       TPLH AA+ G + ++  +L    + +  V    DT LHLA    
Sbjct: 69  ---HGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD-VNAVDTWGDTPLHLAAIMG 124
Query: 135 QFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
             E + VL      +K     N +D+ G T   ++
Sbjct: 125 HLEIVEVL------LKHGADVNAQDKFGKTAFDIS 153

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 24  PLHVASAYGHVDFVKEIINVRPDL-AHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
           PLH+A+  GH++ V+ ++    D+ A +V   G++P+H+A+  GH  +V  LLK    + 
Sbjct: 50  PLHLAAYSGHLEIVEVLLKHGADVDASDVF--GYTPLHLAAYWGHLEIVEVLLKNGADV- 106
Query: 83  HQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH---DTALHLAIKNNQFEAI 139
           +    +  TPLH AA  G + ++  +L        DV  Q     TA  ++I N   +  
Sbjct: 107 NAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA----DVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 140 TVL 142
            +L
Sbjct: 163 EIL 165

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
           NPLH A+  G++ +++E ++ R  + + +++ G + ++ A   GH  +V  L        
Sbjct: 75  NPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL 133
Query: 83  HQQGPEKNTPLHCAAIKGKVHVLSEMLS 110
           +QQ    +T LH AA KG   ++  +L+
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLA 161

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK 76
           PL++A+A+GH++ V+ ++    D+ + V+  GF+P+H+A+ IGH  +   LLK
Sbjct: 50  PLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLK 101

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 25  LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQ 84
           LH+AS  G +  V+ ++    D  +  +  G++P+H A + GH  VV ELL   + L + 
Sbjct: 14  LHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVV-ELLLQHKALVNT 71
Query: 85  QGPEKNTPLHCAAIKGKVHVLSEMLS 110
            G + ++PLH AA  G V ++  +LS
Sbjct: 72  TGYQNDSPLHDAAKNGHVDIVKLLLS 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	328
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-25
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-24
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-24
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-23
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-22
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-22
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-21
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-20
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-22
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-22
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-22
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-21
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-21
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-18
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-11
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-20
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-20
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-20
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-20
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-20
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-20
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-20
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-20
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-20
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-19
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-19
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-17
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-12
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-09
2rfa_A	232	Transient receptor potential cation channel subfa	1e-18
2rfa_A	232	Transient receptor potential cation channel subfa	2e-18
2rfa_A	232	Transient receptor potential cation channel subfa	2e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-10
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-18
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-14
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-16
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-17
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-17
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-16
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-13
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-16
2etb_A	256	Transient receptor potential cation channel subfam	2e-16
2etb_A	256	Transient receptor potential cation channel subfam	3e-14
2etb_A	256	Transient receptor potential cation channel subfam	6e-09
2etb_A	256	Transient receptor potential cation channel subfam	4e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-16
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-09
2pnn_A	273	Transient receptor potential cation channel subfa	4e-16
2pnn_A	273	Transient receptor potential cation channel subfa	2e-15
2pnn_A	273	Transient receptor potential cation channel subfa	3e-15
2pnn_A	273	Transient receptor potential cation channel subfa	3e-12
2pnn_A	273	Transient receptor potential cation channel subfa	1e-08
2pnn_A	273	Transient receptor potential cation channel subfa	1e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-14
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-09
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-04

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 97.5 bits (244), Expect = 9e-25
 Identities = 37/175 (21%), Positives = 74/175 (42%), Gaps = 36/175 (20%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
            +H  +A G +D +KE +    +L ++ ++ GF+P+  AS+ G    VR LL+       
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE------- 57

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIE---DVTIQHD---TALHLA 130
             G + +       + L  A+  G   ++  +L      +E   D+ I      T L  A
Sbjct: 58  -WGADPHILAKERESALSLASTGGYTDIV-GLL------LERDVDINIYDWNGGTPLLYA 109

Query: 131 IKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
           ++ N  + +  L+      +  ++   + + G T + LA     RK  +++  H 
Sbjct: 110 VRGNHVKCVEALLA-----RGADL-TTEADSGYTPMDLAVALGYRKVQQVIENHI 158

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 67.8 bits (167), Expect = 6e-14
 Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 9/131 (6%)

Query: 55  GFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPE 114
               +H  ++ G    ++E L+    L ++      TPL  A+  G++  +  +L    +
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 115 CIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQ 174
               +  + ++AL LA      + + +L+      +  +I N+ D  G T L  A R   
Sbjct: 62  -PHILAKERESALSLASTGGYTDIVGLLLE-----RDVDI-NIYDWNGGTPLLYAVRGNH 114

Query: 175 RK--ELLLGHG 183
            K  E LL  G
Sbjct: 115 VKCVEALLARG 125

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  101 bits (253), Expect = 4e-24
 Identities = 45/169 (26%), Positives = 67/169 (39%), Gaps = 25/169 (14%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLHVA  + ++D VK ++       H    +G++P+HIA+      V R LL        
Sbjct: 182 PLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLL-------- 232

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQF 136
           Q G   N       TPLH AA +G   +++ +LS              T LHL  +    
Sbjct: 233 QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHV 291

Query: 137 EAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
               VL+          + +     G T LH+A+     K  + LL H 
Sbjct: 292 PVADVLIK-----HGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  100 bits (251), Expect = 7e-24
 Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 25/169 (14%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLHVA+ YG V   + ++       +   ++G +P+H+A    +  +V+ LL        
Sbjct: 149 PLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLP------- 200

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQF 136
            +G   +       TPLH AA + +V V   +L          ++Q  T LHLA +    
Sbjct: 201 -RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHA 258

Query: 137 EAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK--KQRKELLLGHG 183
           E + +L++  +        N+ ++ G T LHL  ++      ++L+ HG
Sbjct: 259 EMVALLLS--KQAN----GNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 301

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 95.3 bits (238), Expect = 3e-22
 Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 19/166 (11%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK----VEQ 79
           PLHVAS  GH+  VK ++       +  N    +P+H+A+  GHT V + LL+    V  
Sbjct: 17  PLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75

Query: 80  KLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAI 139
           K       +  TPLHCAA  G  +++  +L          T    T LH+A +    E +
Sbjct: 76  K-----AKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETV 129

Query: 140 TVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
             L+   +            ++G T LH+A +  + +  ELLL   
Sbjct: 130 LALLE--KEAS----QACMTKKGFTPLHVAAKYGKVRVAELLLERD 169

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 90.6 bits (226), Expect = 2e-20
 Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 29/171 (16%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH+A+  GH + V  +++ + +  +  N+ G +P+H+ +  GH  V   L+        
Sbjct: 248 PLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLI-------- 298

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLS--ACPECIEDVTIQHDTALHLAIKNN 134
           + G   +       TPLH A+  G + ++  +L   A    +   T    + LH A +  
Sbjct: 299 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD---VNAKTKLGYSPLHQAAQQG 355

Query: 135 QFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
             + +T+L+            N     G T L +A R       ++L    
Sbjct: 356 HTDIVTLLLK-----NGASP-NEVSSDGTTPLAIAKRLGYISVTDVLKVVT 400

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 70.6 bits (174), Expect = 1e-13
 Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 24/143 (16%)

Query: 50  EVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGKV 102
              + G +P+H+AS +GH  +V+ LL        Q+G   N       TPLH AA  G  
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLL--------QRGASPNVSNVKVETPLHMAARAGHT 60

Query: 103 HVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQG 162
            V   +L    + +        T LH A +      + +L+            N+    G
Sbjct: 61  EVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLE--NNAN----PNLATTAG 113

Query: 163 NTVLHLATRKKQRK--ELLLGHG 183
           +T LH+A R+   +    LL   
Sbjct: 114 HTPLHIAAREGHVETVLALLEKE 136

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 65.6 bits (161), Expect = 4e-12
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 20/117 (17%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLHVAS YG++  VK ++  + D+ +   + G+SP+H A+  GHT +V  LLK       
Sbjct: 314 PLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLK------- 365

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQ---HDTALHLA 130
             G   N       TPL  A   G + V  ++L    +    V +      +     
Sbjct: 366 -NGASPNEVSSDGTTPLAIAKRLGYISVT-DVLKVVTDETSFVLVSDKHRMSFPETV 420

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 94.4 bits (236), Expect = 6e-23
 Identities = 29/171 (16%), Positives = 70/171 (40%), Gaps = 27/171 (15%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
            +  A+ YG  +  +E++    D+  + +++  + +H A+      +V+  +        
Sbjct: 12  DIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYI-------- 62

Query: 84  QQGPEKN--------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQ 135
            +G   +        TPLH A  +G + ++ +++    +    +  +  + +HLA +   
Sbjct: 63  SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGH 121

Query: 136 FEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKE---LLLGHG 183
              +  L+   +G    ++ +M D+ G T L  A  +    +   LLL   
Sbjct: 122 TSIVAYLIA--KGQ---DV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN 166

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 92.1 bits (230), Expect = 3e-22
 Identities = 38/180 (21%), Positives = 70/180 (38%), Gaps = 45/180 (25%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH A+  GH+  V +++    D    ++ +G S +H+A+  GHT +V  L+        
Sbjct: 79  PLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLI-------- 129

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIE-------DVTIQHD----T 125
            +G + +       TPL  AA +   H +        +           V +       T
Sbjct: 130 AKGQDVDMMDQNGMTPLMWAAYRT--HSV--------DPTRLLLTFNVSVNLGDKYHKNT 179

Query: 126 ALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
           ALH A+       I++L+          + + ++ +G + L LA ++K       L    
Sbjct: 180 ALHWAVLAGNTTVISLLLE-----AGANV-DAQNIKGESALDLAKQRKNVWMINHLQEAR 233

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 70.5 bits (174), Expect = 2e-14
 Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 25/144 (17%)

Query: 50  EVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGKV 102
            ++      +  A+  G     REL+        + G +         T LH AAI  ++
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELV--------EAGYDVRQPDKENVTLLHWAAINNRI 55

Query: 103 HVLSEMLSACPECIEDVTIQHD-TALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQ 161
            ++   +S     ++ +    + T LH A +      +  L+    G       ++ D +
Sbjct: 56  DLVKYYISKGAI-VDQLGGDLNSTPLHWATRQGHLSMVVQLMK--YGAD----PSLIDGE 108

Query: 162 GNTVLHLATRKKQRK--ELLLGHG 183
           G + +HLA +         L+  G
Sbjct: 109 GCSCIHLAAQFGHTSIVAYLIAKG 132

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 53.6 bits (130), Expect = 1e-08
 Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQK 80
            LH A   G+   +  ++    ++    N  G S + +A    +  ++  L +  Q 
Sbjct: 180 ALHWAVLAGNTTVISLLLEAGANV-DAQNIKGESALDLAKQRKNVWMINHLQEARQA 235

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 92.1 bits (230), Expect = 1e-22
 Identities = 34/169 (20%), Positives = 61/169 (36%), Gaps = 24/169 (14%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
            +      G+   V+  ++   +  ++ +  GFSP+H A   G + VV  L+        
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM------- 60

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQF 136
            +G   N       TPLH AA  G   ++ ++L    + I  V    +  LH A    Q 
Sbjct: 61  -RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQD 118

Query: 137 EAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
           +    LV          + ++ ++ G   +  A    +    E     G
Sbjct: 119 QVAEDLVA-----NGALV-SICNKYGEMPVDKAKAPLRELLRERAEKMG 161

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 70.9 bits (175), Expect = 6e-15
 Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 31/145 (21%)

Query: 52  NQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSA 111
           + +    +      G+   VR  L   +   +Q      +PLH A  +G+  V+ EML  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVV-EML-- 58

Query: 112 CPECIEDVTIQH-----------DTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDE 160
                    I             DT LHLA  +   + +  L+       + +I N  +E
Sbjct: 59  ---------IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ-----YKADI-NAVNE 103

Query: 161 QGNTVLHLATRKKQRK--ELLLGHG 183
            GN  LH A    Q +  E L+ +G
Sbjct: 104 HGNVPLHYACFWGQDQVAEDLVANG 128

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 10/78 (12%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH A  +G     ++++     +    N+ G  P+  A +     +     K       
Sbjct: 108 PLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAEK------- 159

Query: 84  QQGPEKN-TPLHCAAIKG 100
             G   N  P      KG
Sbjct: 160 -MGQNLNRIPYKDTFWKG 176

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 96.1 bits (240), Expect = 1e-22
 Identities = 27/185 (14%), Positives = 55/185 (29%), Gaps = 39/185 (21%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLA----HEVNQDGFSPMHIASSIGHTGVVRELLKVEQ 79
           PL  A  + + + +  +++  P  +       N+ G S +H A  I    V    +    
Sbjct: 176 PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFV---- 231

Query: 80  KLCHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD-------- 124
               + G + N        PL+ +     V +  E+L      +      H+        
Sbjct: 232 ----EMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDR 287

Query: 125 ----TALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--EL 178
                 +  A   ++ E + +L       K +E+       G        +K       +
Sbjct: 288 VVWLDFVPAAADPSKQEVLQLLQE-----KLDEV-VRSLNTGAGGAVKRKKKAAPAVKRM 341

Query: 179 LLGHG 183
            L   
Sbjct: 342 KLAPS 346

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 91.9 bits (229), Expect = 4e-21
 Identities = 33/192 (17%), Positives = 62/192 (32%), Gaps = 45/192 (23%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVN-QDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
            LH+A  +G VD  K + +V        +   G  P+H+A     T +V  L+       
Sbjct: 56  ALHLACKFGCVDTAKYLASVGEV----HSLWHGQKPIHLAVMANKTDLVVALV------- 104

Query: 83  HQQGPEKN-TPLHCAAIKGKV------------------HVLSEMLSACPECIE------ 117
            +   E+   P        +                   H    +     E I+      
Sbjct: 105 -EGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG 163

Query: 118 -DVTIQHD---TALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKK 173
              T +     T L  A++    EA+ ++++ +       + +  ++QGN+ LH A    
Sbjct: 164 ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL-DYANKQGNSHLHWAILIN 222

Query: 174 QRK--ELLLGHG 183
                   +  G
Sbjct: 223 WEDVAMRFVEMG 234

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 89.5 bits (223), Expect = 2e-20
 Identities = 33/190 (17%), Positives = 61/190 (32%), Gaps = 42/190 (22%)

Query: 12  FLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIG--HTG 69
            LV+    R   P  + +     +  +   +V+       +  G + +H    +G  +  
Sbjct: 102 ALVEGAKERGQMPESLLNECDEREVNEIGSHVK-------HCKGQTALHWCVGLGPEYLE 154

Query: 70  VVRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPEC----IED 118
           +++ L+        Q G           TPL  A        L  M+   P      ++ 
Sbjct: 155 MIKILV--------QLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY 206

Query: 119 VTIQHDTALHLAIKNNQFEAITVLVNW---IRGMKREEIFNMKDEQGNTVLHLATRKKQR 175
              Q ++ LH AI  N  +     V     +         NM+D +    L+L+ R    
Sbjct: 207 ANKQGNSHLHWAILINWEDVAMRFVEMGIDV---------NMEDNEHTVPLYLSVRAAMV 257

Query: 176 K--ELLLGHG 183
              + LL   
Sbjct: 258 LLTKELLQKT 267

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 86.8 bits (216), Expect = 2e-19
 Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 37/169 (21%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
            +HVA+  G  D V+ +I          N+ G + +H+A   G     + L         
Sbjct: 23  KIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKYLAS------- 74

Query: 84  QQGPEKN-----TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEA 138
             G   +      P+H A +  K  ++  ++    E       +      L  + ++ E 
Sbjct: 75  -VGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKE-------RGQMPESLLNECDEREV 126

Query: 139 ITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK----ELLLGHG 183
             +              ++K  +G T LH             ++L+  G
Sbjct: 127 NEIGS------------HVKHCKGQTALHWCVGLGPEYLEMIKILVQLG 163

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 86.1 bits (214), Expect = 3e-19
 Identities = 17/178 (9%), Positives = 51/178 (28%), Gaps = 23/178 (12%)

Query: 24  PLHVASAYG--HVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
            LH     G  +++ +K ++ +        ++   +P+  A    +   +  ++     +
Sbjct: 141 ALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMM---DTV 196

Query: 82  CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
             +     +       + LH A +     V    +    + +     +H   L+L+++  
Sbjct: 197 PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAA 255

Query: 135 QFEAITVLVNWIRGMKREEIF-------NMKDEQGNTVLHLATRK--KQRKELLLGHG 183
                  L+        +                    +  A     ++  +LL    
Sbjct: 256 MVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL 313

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 83.8 bits (208), Expect = 2e-18
 Identities = 19/158 (12%), Positives = 40/158 (25%), Gaps = 20/158 (12%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
            LH A      D     + +  D+ +  + +   P++++       + +ELL+       
Sbjct: 214 HLHWAILINWEDVAMRFVEMGIDV-NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLI 272

Query: 84  QQGPEKN------------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAI 131
           Q  P  N              +  AA   K  VL  +     E +               
Sbjct: 273 QACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE-VVRSLNTGAGGAVKRK 331

Query: 132 KNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
           K        + +              +         ++
Sbjct: 332 KKAAPAVKRMKLA--PSAP----VRTRSRSRARSSAVS 363

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 94.5 bits (236), Expect = 1e-22
 Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 36/174 (20%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           P+H A+ +GH   ++ +I+    + + +  D  SP+H A   GH   V+ LL        
Sbjct: 62  PMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILL-------- 112

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIE---DVTIQHD--TALHLAI 131
           + G + N       TPL  A + G    +  +L      ++    V  + D  + +H A 
Sbjct: 113 KHGAQVNGVTADWHTPLFNACVSGSWDCV-NLL------LQHGASVQPESDLASPIHEAA 165

Query: 132 KNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
           +    E +  L+          I + K     T L+LA   +QR   + LL  G
Sbjct: 166 RRGHVECVNSLIA-----YGGNI-DHKISHLGTPLYLACENQQRACVKKLLESG 213

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 88.7 bits (221), Expect = 2e-20
 Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 24/167 (14%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK----VEQ 79
           PL  A   G  D V  ++     +  +   D  SP+H A+  GH   V  L+     ++ 
Sbjct: 128 PLFNACVSGSWDCVNLLLQHGASV--QPESDLASPIHEAARRGHVECVNSLIAYGGNIDH 185

Query: 80  KLCHQQGPEKNTPLHCAAIKGKVHVLSEMLS--ACPECIEDVTIQHDTALHLAIKNNQFE 137
           K+ H       TPL+ A    +   + ++L   A     +      D+ LH  ++    E
Sbjct: 186 KISHLG-----TPLYLACENQQRACVKKLLESGADVNQGKG----QDSPLHAVVRTASEE 236

Query: 138 AITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK-KQRKELLLGHG 183
              +L++        +    K+ +G   + L   +    +  L   G
Sbjct: 237 LACLLMD-----FGADT-QAKNAEGKRPVELVPPESPLAQLFLEREG 277

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 75.6 bits (187), Expect = 6e-16
 Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 27/172 (15%)

Query: 21  KGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQK 80
           K   +  +   G  DF    +   P +   V    +SPMH A+  GH   +R L+     
Sbjct: 27  KQGGMDGSKPAGPRDFPGIRLLSNPLMGDAV--SDWSPMHEAAIHGHQLSLRNLIS---- 80

Query: 81  LCHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKN 133
               QG   N       +PLH A + G +  +  +L    + +  VT    T L  A  +
Sbjct: 81  ----QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVS 135

Query: 134 NQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
             ++ + +L+    G   +      +    + +H A R+   +    L+ +G
Sbjct: 136 GSWDCVNLLLQ--HGASVQ-----PESDLASPIHEAARRGHVECVNSLIAYG 180

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 55.6 bits (135), Expect = 4e-09
 Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 20/129 (15%)

Query: 61  IASSIGHTGVVRELLK----VEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECI 116
           + SS  H      L+     +      Q G + + P       G    L          +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPG--IRLLS------NPL 52

Query: 117 EDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK 176
               +   + +H A  +    ++  L++  +G       N+      + LH A       
Sbjct: 53  MGDAVSDWSPMHEAAIHGHQLSLRNLIS--QGWA----VNIITADHVSPLHEACLGGHLS 106

Query: 177 --ELLLGHG 183
             ++LL HG
Sbjct: 107 CVKILLKHG 115

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 90.5 bits (226), Expect = 3e-22
 Identities = 33/180 (18%), Positives = 68/180 (37%), Gaps = 40/180 (22%)

Query: 22  GN---PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVE 78
           G     +H  +A G + ++   I     + +  +++GF+P+  A++ G   VV  LL+  
Sbjct: 1   GANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQ-- 57

Query: 79  QKLCHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIE---DVTIQHD---T 125
                  G +         + L  A  KG   ++ +ML      ++   DV        T
Sbjct: 58  ------NGADPQLLGKGRESALSLACSKGYTDIV-KML------LDCGVDVNEYDWNGGT 104

Query: 126 ALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
            L  A+  N  + + +L+         +   ++ + G   + LA     R   +++  H 
Sbjct: 105 PLLYAVHGNHVKCVKMLLE-----SGADP-TIETDSGYNSMDLAVALGYRSVQQVIESHL 158

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 92.5 bits (231), Expect = 3e-22
 Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 24/169 (14%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH A+  GHVD    ++    ++    ++D  +P+  A+   H   V+ L+K       
Sbjct: 14  PLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIK------- 65

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQF 136
             G   +       T LH AA KG   V+  +LS     +        T +  A +    
Sbjct: 66  -AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124

Query: 137 EAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
           + + +L++     K  +I N++D + N  LH A         E+LL   
Sbjct: 125 DLVKLLLS-----KGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAK 167

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 90.9 bits (227), Expect = 9e-22
 Identities = 38/169 (22%), Positives = 75/169 (44%), Gaps = 24/169 (14%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
            LH+A+  GH + V+ +++      +  +  G++PM  A+   H  +V+ LL        
Sbjct: 80  CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL-------- 131

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQF 136
            +G + N         LH AA  G V +   +L+A  + +  V I  D+ LH+A + N++
Sbjct: 132 SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRY 190

Query: 137 EAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
           + + + ++  R         +K+++G T L  A+   Q      +    
Sbjct: 191 DCVVLFLS--RDSD----VTLKNKEGETPLQCASLNSQVWSALQMSKAL 233

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 72.8 bits (180), Expect = 3e-15
 Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 23/141 (16%)

Query: 52  NQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGKVHV 104
           +Q+  SP+H A+  GH  +   L+        Q G   +       TPL  AA    +  
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLV--------QAGANIDTCSEDQRTPLMEAAENNHLEA 59

Query: 105 LSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNT 164
           +  ++ A    ++    +  T LHLA K   +E +  L++   G  + ++ N +D+ G T
Sbjct: 60  VKYLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLS--NG--QMDV-NCQDDGGWT 113

Query: 165 VLHLATRKKQRK--ELLLGHG 183
            +  AT  K     +LLL  G
Sbjct: 114 PMIWATEYKHVDLVKLLLSKG 134

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 91.4 bits (228), Expect = 6e-22
 Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 24/168 (14%)

Query: 24  PLHVASAYGHVDFVKEIIN--VRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
           P H+A + G+++ VK + +  ++PDL +++   G + +H+A       V + L++     
Sbjct: 75  PFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIE----- 128

Query: 82  CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
               G            PLH AA  G + ++  +       +     Q  T L  A+   
Sbjct: 129 ---NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185

Query: 135 QFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELLLGH 182
             +A  +LV    G +    +++ D +G     +A   +Q K+  L +
Sbjct: 186 HGDAAVLLVEK-YGAE----YDLVDNKGAKAEDVALN-EQVKKFFLNN 227

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 89.4 bits (223), Expect = 3e-21
 Identities = 45/168 (26%), Positives = 67/168 (39%), Gaps = 17/168 (10%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH A        V+E+++ +P L  + +QDG  P+H + S     +   LL   + +  
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

Query: 84  QQGPEKN--TPLHCAAIKGKVHV----LSEMLSACPECIEDVTIQHDTALHLAIKNNQFE 137
              P+ +  TP H A   G + V        L      +  +T Q  T LHLA+    FE
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP---DLNKITNQGVTCLHLAVGKKWFE 121

Query: 138 AITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
               L+          +  +KD+     LH A      K  ELL G G
Sbjct: 122 VSQFLIE-----NGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLG 163

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 70.2 bits (173), Expect = 2e-14
 Identities = 30/140 (21%), Positives = 46/140 (32%), Gaps = 22/140 (15%)

Query: 55  GFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGKVHVLSE 107
              P+H A        V+ELL         +             PLH +       + S 
Sbjct: 2   SNYPLHQACMENEFFKVQELLH-------SKPSLLLQKDQDGRIPLHWSVSFQAHEITSF 54

Query: 108 MLS--ACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTV 165
           +LS        +       T  H+A      E +  L +        ++ N    QG T 
Sbjct: 55  LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP---DL-NKITNQGVTC 110

Query: 166 LHLATRKKQRK--ELLLGHG 183
           LHLA  KK  +  + L+ +G
Sbjct: 111 LHLAVGKKWFEVSQFLIENG 130

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 90.4 bits (225), Expect = 1e-21
 Identities = 37/169 (21%), Positives = 60/169 (35%), Gaps = 25/169 (14%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
            L  +S  G  D V+ II    D     N +G + +H A   GHT +V+ L+        
Sbjct: 40  LLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLV-------- 90

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLS--ACPECIEDVTIQHDTALHLAIKNN 134
           Q G   N       TPLHCAA    V V   ++   A    +    +Q        ++  
Sbjct: 91  QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEG 150

Query: 135 QFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELLLGHG 183
             +    L        +E++  + ++     L      +   EL +  G
Sbjct: 151 YTQCSQFLYG-----VQEKM-GIMNKGVIYALWDYE-PQNDDELPMKEG 192

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 80.4 bits (199), Expect = 7e-18
 Identities = 27/175 (15%), Positives = 48/175 (27%), Gaps = 35/175 (20%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
            L             E I     +  + N    + +  +S  G   +V+ ++        
Sbjct: 8   SLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIY------- 58

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIE---DVTIQHD---TALHLA 130
            +  + +       T LH A   G   +  + L      ++   +V        T LH A
Sbjct: 59  -EVDDPSLPNDEGITALHNAVCAGHTEI-VKFL------VQFGVNVNAADSDGWTPLHCA 110

Query: 131 IKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK--KQRKELLLGHG 183
              N  +    LV    G     +    D Q          +   Q  + L G  
Sbjct: 111 ASCNNVQVCKFLVE--SGAAVFAM-TYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 67.3 bits (165), Expect = 3e-13
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 23/138 (16%)

Query: 54  DGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN------TPLHCAAIKGKVHVLSE 107
            G   +             E +          G            L  ++++G+  ++  
Sbjct: 4   TGQVSLPPGKRTNLRKTGSERIA--------HGMRVKFNPLPLALLLDSSLEGEFDLVQR 55

Query: 108 MLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLH 167
           ++    +       +  TALH A+     E +  LV    G+    + N  D  G T LH
Sbjct: 56  IIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQ--FGV---NV-NAADSDGWTPLH 108

Query: 168 LATRKKQRK--ELLLGHG 183
            A      +  + L+  G
Sbjct: 109 CAASCNNVQVCKFLVESG 126

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 86.7 bits (216), Expect = 6e-21
 Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 38/178 (21%)

Query: 20  RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQ 79
           R G+ L  A+A G V  V+ +++        +N+ G + + +    G T +  ELLK   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLK--- 56

Query: 80  KLCHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIE---DVTIQHD---TA 126
                QG   N       +P+H AA  G +  L ++L      +E   DV +        
Sbjct: 57  -----QGASPNVQDTSGTSPVHDAARTGFLDTL-KVL------VEHGADVNVPDGTGALP 104

Query: 127 LHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGH 182
           +HLA++      ++ L          ++ + +D +G T L LA ++  +   ++L GH
Sbjct: 105 IHLAVQEGHTAVVSFLA------AESDL-HRRDARGLTPLELALQRGAQDLVDILQGH 155

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 88.7 bits (221), Expect = 7e-21
 Identities = 39/176 (22%), Positives = 64/176 (36%), Gaps = 30/176 (17%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQ---DGFSPMHIASSIGHTGVVRELLKVEQK 80
           PLH+A   G++  V  ++N+      E++       +P+H+A       VVR L+     
Sbjct: 12  PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT---- 67

Query: 81  LCHQQGPEKN-------TPLHCAAIKGKVHVLSEMLS---ACPECIEDVTIQHDTALHLA 130
                G           T  H A        L  +L         +E       TALH+A
Sbjct: 68  ----AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 123

Query: 131 IKNNQFEAITVLVNWIRGMKREEIFNMKDEQ-GNTVLHLATRKKQRK--ELLLGHG 183
           +     E + +L+      +  +I +  D + G + L  A         +LLL HG
Sbjct: 124 VNTECQETVQLLLE-----RGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQHG 173

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 88.7 bits (221), Expect = 7e-21
 Identities = 24/173 (13%), Positives = 58/173 (33%), Gaps = 28/173 (16%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVN---QDGFSPMHIASSIGHTGVVRELLKVEQK 80
             H+A  +     ++ +++       ++     DG + +H+A +      V+ LL+    
Sbjct: 82  AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE---- 137

Query: 81  LCHQQGPEKN--------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIK 132
               +G + +        +PL  A     + ++  +L      +        +ALH A  
Sbjct: 138 ----RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASG 192

Query: 133 NNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
                 +  LV         +  ++K+   +T L +A  ++            
Sbjct: 193 RGLLPLVRTLVR-----SGADS-SLKNCHNDTPLMVARSRRVIDILRGKATRP 239

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 81.3 bits (202), Expect = 3e-18
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 16/146 (10%)

Query: 47  LAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-------TPLHCAAIK 99
           +A   ++DG +P+HIA   G+   V  L+     L  Q G E +       TPLH A I 
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLV----NLFQQGGRELDIYNNLRQTPLHLAVIT 56

Query: 100 GKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKD 159
               V+  +++A       +     TA HLA ++     +  L++             ++
Sbjct: 57  TLPSVVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLD--SAAPGTLDLEARN 113

Query: 160 EQGNTVLHLATRKKQRK--ELLLGHG 183
             G T LH+A   + ++  +LLL  G
Sbjct: 114 YDGLTALHVAVNTECQETVQLLLERG 139

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 88.3 bits (220), Expect = 1e-20
 Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 10/162 (6%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
            LH+A+ Y   D  K ++    D A+  +  G +P+H A S    GV + L++       
Sbjct: 60  ALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118

Query: 84  QQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLV 143
            +  +  TPL  AA      +L +++++  + +  V     +ALH A   N  +A  VL+
Sbjct: 119 ARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLL 177

Query: 144 NWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
               G  +    +M++ +  T L LA R+   +  ++LL H 
Sbjct: 178 K--NGANK----DMQNNREETPLFLAAREGSYETAKVLLDHF 213

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 87.5 bits (218), Expect = 2e-20
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 24/169 (14%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH A +       + +I  R         DG +P+ +A+ +   G++ +L+        
Sbjct: 93  PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN------- 145

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQF 136
               + N       + LH AA    V     +L       +    + +T L LA +   +
Sbjct: 146 -SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSY 203

Query: 137 EAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
           E   VL++      R    ++ D        +A  +       LL    
Sbjct: 204 ETAKVLLD--HFANR----DITDHMDRLPRDIAQERMHHDIVRLLDLEH 246

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 80.2 bits (199), Expect = 9e-18
 Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 36/182 (19%)

Query: 24  PLHVASAYG-------------HVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGV 70
           PL +AS  G                 + + I     L ++ ++ G + +H+A+    +  
Sbjct: 13  PLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDA 72

Query: 71  VRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH 123
            + LL        +   + N       TPLH A       V   ++      ++      
Sbjct: 73  AKRLL--------EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 124

Query: 124 DTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLG 181
            T L LA +      +  L+N        ++ N  D+ G + LH A          +LL 
Sbjct: 125 TTPLILAARLAVEGMLEDLIN-----SHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLK 178

Query: 182 HG 183
           +G
Sbjct: 179 NG 180

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 62.9 bits (154), Expect = 1e-11
 Identities = 32/149 (21%), Positives = 48/149 (32%), Gaps = 21/149 (14%)

Query: 50  EVNQDGFSPMHIASSIG-------------HTGVVRELLKVEQKLCHQQGPEKNTPLHCA 96
               DGF+P+ IAS  G                V+ + +     L +Q      T LH A
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64

Query: 97  AIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFN 156
           A   +      +L A  +          T LH A+  +      +L+       R    +
Sbjct: 65  ARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR-----NRATDLD 118

Query: 157 MKDEQGNTVLHLATRKKQRK--ELLLGHG 183
            +   G T L LA R       E L+   
Sbjct: 119 ARMHDGTTPLILAARLAVEGMLEDLINSH 147

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 87.6 bits (218), Expect = 2e-20
 Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 28/174 (16%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH+A      +  + ++    D     +  G +P+H+A   G    V  L +       
Sbjct: 48  PLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106

Query: 84  QQGP-EKN----TPLHCAAIKGKVHVLSEMLSACPECIE---DVTIQHD----TALHLAI 131
                  N    T LH A+I G + ++ E+L      +    DV  Q      TALHLA+
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIV-ELL------VSLGADVNAQEPCNGRTALHLAV 159

Query: 132 KNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
                + +++L+         ++ N    QG +   L   +   +  + L    
Sbjct: 160 DLQNPDLVSLLLK-----CGADV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 207

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 87.2 bits (217), Expect = 2e-20
 Identities = 37/178 (20%), Positives = 62/178 (34%), Gaps = 32/178 (17%)

Query: 24  PLHVASAYGHVDFVKEIINV---RPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQK 80
            LH+A  +       E+I          +  N    +P+H+A       +   LL     
Sbjct: 11  FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG---- 66

Query: 81  LCHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH-----DTALH 128
                G +         TPLH A  +G +  +  +  +C        ++       T LH
Sbjct: 67  ----AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122

Query: 129 LAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQ-GNTVLHLATRKKQRK--ELLLGHG 183
           LA  +     + +LV+        ++ N ++   G T LHLA   +      LLL  G
Sbjct: 123 LASIHGYLGIVELLVS-----LGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 174

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 82.2 bits (204), Expect = 2e-18
 Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 14/144 (9%)

Query: 49  HEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGK 101
            ++ +DG S +H+A       +  E++    +         N       TPLH A I  +
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVI----RQVKGDLAFLNFQNNLQQTPLHLAVITNQ 57

Query: 102 VHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQ 161
             +   +L A  +  E    + +T LHLA +     ++ VL           I    +  
Sbjct: 58  PEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN 116

Query: 162 GNTVLHLATRKKQRK--ELLLGHG 183
           G+T LHLA+        ELL+  G
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLG 140

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 75.7 bits (187), Expect = 3e-16
 Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 29/166 (17%)

Query: 20  RKGN-PLHVASAYGHVDFVKEIINVRPDLAH-----EVNQDGFSPMHIASSIGHTGVVRE 73
            +GN PLH+A   G +  V  +                N +G + +H+AS  G+ G+V  
Sbjct: 76  FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL 135

Query: 74  LLKVEQKLCHQQGPEKN--------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDT 125
           L+          G + N        T LH A       ++S +L    + +  VT Q  +
Sbjct: 136 LV--------SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYS 186

Query: 126 ALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATR 171
              L            L      ++          +        T 
Sbjct: 187 PYQLTWGRPSTRIQQQLGQ--LTLEN----LQMLPESEDEESYDTE 226

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 60.6 bits (148), Expect = 5e-11
 Identities = 17/119 (14%), Positives = 49/119 (41%), Gaps = 16/119 (13%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
             LH+AS +G++  V+ ++++  D+  +   +G + +H+A  + +  +V  LL       
Sbjct: 119 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL------- 171

Query: 83  HQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
            + G + N       +P      +    +  ++     E ++ +  + +       ++ 
Sbjct: 172 -KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ-MLPESEDEESYDTESE 228

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 88.3 bits (220), Expect = 2e-20
 Identities = 40/182 (21%), Positives = 63/182 (34%), Gaps = 36/182 (19%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH A      D V+ ++    D      ++G +P  +A+  G   +++  L        
Sbjct: 42  PLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGSVKLLKLFL-------- 92

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSA---------CPECIEDVTIQHDTAL 127
            +G + N       T    AA+ GKV  L  +              E  E +     TAL
Sbjct: 93  SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152

Query: 128 HLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK------ELLLG 181
             A +    E + +L++   G    ++ N  D  G   L  A              LLL 
Sbjct: 153 MDAAEKGHVEVLKILLDE-MGA---DV-NACDNMGRNALIHALLSSDDSDVEAITHLLLD 207

Query: 182 HG 183
           HG
Sbjct: 208 HG 209

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 86.0 bits (214), Expect = 1e-19
 Identities = 40/175 (22%), Positives = 68/175 (38%), Gaps = 26/175 (14%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
           + L  A     VD V++++    ++  +  + G++P+H A  +    +V  LL+      
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR------ 60

Query: 83  HQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQ 135
              G +         TP   AAI G V +L   LS   + + +      TA   A    +
Sbjct: 61  --HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGK 117

Query: 136 FEAITVL------VNWIRGMKREEIFNMKDEQGNTVLHLATRK--KQRKELLLGH 182
            +A+  L      VN  R  K +E      + G T L  A  K   +  ++LL  
Sbjct: 118 VKALKFLYKRGANVNLRR--KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 170

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 82.9 bits (206), Expect = 2e-18
 Identities = 39/178 (21%), Positives = 67/178 (37%), Gaps = 28/178 (15%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK----VEQ 79
           P  +A+  G V  +K  ++   D+ +E +  GF+    A+  G    ++ L K    V  
Sbjct: 75  PFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL 133

Query: 80  KLCHQQGPEK-----NTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
           +   ++  E+      T L  AA KG V VL  +L      +         AL  A+ ++
Sbjct: 134 RRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS 193

Query: 135 QFEAITVLVNWIRGMKREEIF-------NMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
               +  +           +        N++ E+G T L LA  KK     + LL   
Sbjct: 194 DDSDVEAIT---------HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 81.0 bits (201), Expect = 8e-18
 Identities = 37/182 (20%), Positives = 62/182 (34%), Gaps = 35/182 (19%)

Query: 24  PLHVASAYGHVDFVKEII---------NVRPDLAHEVNQDGFSPMHIASSIGHTGVVREL 74
               A+ YG V  +K +              +    + + G + +  A+  GH  V++ L
Sbjct: 108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

Query: 75  LKVEQKLCHQQGPEKN-------TPLHCAAIKGKVHVLSEM----LSACPECIEDVTIQH 123
           L        + G + N         L  A +      +  +    L    + +     + 
Sbjct: 168 LD-------EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERG 219

Query: 124 DTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLG 181
            T L LA++      +  L+      +  EI N  D  G T L LA   K +K  ELL  
Sbjct: 220 KTPLILAVEKKHLGLVQRLLE----QEHIEI-NDTDSDGKTALLLAVELKLKKIAELLCK 274

Query: 182 HG 183
            G
Sbjct: 275 RG 276

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 66.7 bits (164), Expect = 7e-13
 Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 25/142 (17%)

Query: 52  NQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN--------TPLHCAAIKGKVH 103
             +    +  A       +V++LL        + G   N        TPLH A    +  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLL--------EGGANVNFQEEEGGWTPLHNAVQMSRED 53

Query: 104 VLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGN 163
           ++  +L    +          T   LA      + + + ++     K  ++ N  D  G 
Sbjct: 54  IVELLLRHGAD-PVLRKKNGATPFLLAAIAGSVKLLKLFLS-----KGADV-NECDFYGF 106

Query: 164 TVLHLATRKKQRK--ELLLGHG 183
           T    A    + K  + L   G
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRG 128

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 86.7 bits (216), Expect = 2e-20
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 10/162 (6%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
            LH+A+ Y   D  K ++    D  +  +  G +P+H A S    GV + L++       
Sbjct: 28  ALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 86

Query: 84  QQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLV 143
            +  +  TPL  AA      +L +++++  + +  V     +ALH A   N  +A  VL+
Sbjct: 87  ARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLL 145

Query: 144 NWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
                       +M++ +  T L LA R+   +  ++LL H 
Sbjct: 146 K-----NGANK-DMQNNREETPLFLAAREGSYETAKVLLDHF 181

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 85.9 bits (214), Expect = 5e-20
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 24/169 (14%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH A +       + +I  R         DG +P+ +A+ +   G++ +L+        
Sbjct: 61  PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN------- 113

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQF 136
               + N       + LH AA    V     +L       +    + +T L LA +   +
Sbjct: 114 -SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSY 171

Query: 137 EAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
           E   VL++      R+      D        +A  +       LL  + 
Sbjct: 172 ETAKVLLD--HFANRDI----TDHMDRLPRDIAQERMHHDIVRLLDEYN 214

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 77.8 bits (193), Expect = 5e-17
 Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 23/161 (14%)

Query: 32  GHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN- 90
                + + I     L ++ ++ G + +H+A+    +   + LL        +   + N 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL--------EASADANI 53

Query: 91  ------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVN 144
                 TPLH A       V   ++      ++       T L LA +      +  L+N
Sbjct: 54  QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 113

Query: 145 WIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
                      N  D+ G + LH A          +LL +G
Sbjct: 114 --SHAD----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 148

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.9 bits (110), Expect = 4e-06
 Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 9/71 (12%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PL +A+  G  +  K +++   +     +     P  IA    H  +VR L +       
Sbjct: 161 PLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDE------- 212

Query: 84  QQGPEKNTPLH 94
                ++  LH
Sbjct: 213 -YNLVRSPQLH 222

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 85.1 bits (212), Expect = 2e-20
 Identities = 36/177 (20%), Positives = 68/177 (38%), Gaps = 37/177 (20%)

Query: 22  GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
           GN L  A+A G ++ +  ++    ++ +  N  G + + +   +G+  + R LL      
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVM-KLGNPEIARRLLL----- 58

Query: 82  CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIE---DVTIQHD---TALH 128
              +G   +         +H AA  G +  L + L      +E   DV I+ +     LH
Sbjct: 59  ---RGANPDLKDRTGFAVIHDAARAGFLDTL-QTL------LEFQADVNIEDNEGNLPLH 108

Query: 129 LAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
           LA K      +  LV              ++ +G+T   LA    + +   L+  +G
Sbjct: 109 LAAKEGHLRVVEFLVK-----HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 57.8 bits (141), Expect = 2e-10
 Identities = 23/152 (15%), Positives = 49/152 (32%), Gaps = 45/152 (29%)

Query: 51  VNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGKVH 103
           + +   + +  A++ G    +  LL        Q     N       T L    +     
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLL--------QNNVNVNAQNGFGRTALQVMKLGNP-- 50

Query: 104 VLSEMLSACPECIE-------DVTIQHD---TALHLAIKNNQFEAITVLVNWIRGMKREE 153
                     E          +  ++       +H A +    + +  L+       + +
Sbjct: 51  ----------EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE-----FQAD 95

Query: 154 IFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
           + N++D +GN  LHLA ++   +  E L+ H 
Sbjct: 96  V-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 85.1 bits (212), Expect = 3e-20
 Identities = 39/179 (21%), Positives = 64/179 (35%), Gaps = 45/179 (25%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
            L  A+  G V+ VK++  V+     ++     +P+H A+      VV  LL+       
Sbjct: 11  QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ------- 63

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH-----------DT 125
             G + +        PLH A   G   V +E+L           ++H            T
Sbjct: 64  -HGADVHAKDKGGLVPLHNACSYGHYEV-AELL-----------VKHGAVVNVADLWKFT 110

Query: 126 ALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK-KQRKELLLGHG 183
            LH A    ++E   +L+         +    K+  GNT L L        ++LL G  
Sbjct: 111 PLHEAAAKGKYEICKLLLQ-----HGADP-TKKNRDGNTPLDLVKDGDTDIQDLLRGDA 163

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 69.7 bits (172), Expect = 1e-14
 Identities = 37/146 (25%), Positives = 55/146 (37%), Gaps = 31/146 (21%)

Query: 51  VNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLS 110
            N +    +  A+  G    V++L  V+   C      ++TPLH AA   +V V+ E L 
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV-EYL- 61

Query: 111 ACPECIEDVTIQH-----------DTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKD 159
                     +QH              LH A     +E   +LV          + N+ D
Sbjct: 62  ----------LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-----HGAVV-NVAD 105

Query: 160 EQGNTVLHLATRKKQRK--ELLLGHG 183
               T LH A  K + +  +LLL HG
Sbjct: 106 LWKFTPLHEAAAKGKYEICKLLLQHG 131

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 86.5 bits (215), Expect = 3e-20
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 16/170 (9%)

Query: 17  KALRKGN-PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELL 75
           K ++ G   +  A          E+     D+   +     +     +S G TG++    
Sbjct: 7   KPVKPGQVKVFRALYTFEPRTPDELYIEEGDI-IYITDMSDTNWWKGTSKGRTGLIPSN- 64

Query: 76  KVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQ 135
                   +Q    + PLH AA +G +  L E L      +  +     TAL+ A     
Sbjct: 65  -----YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGH 118

Query: 136 FEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
            + + +L      +   E+ N +++ G+T LH A  K      +LLL  G
Sbjct: 119 KDIVEMLFTQ-PNI---EL-NQQNKLGDTALHAAAWKGYADIVQLLLAKG 163

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 86.1 bits (214), Expect = 5e-20
 Identities = 25/169 (14%), Positives = 53/169 (31%), Gaps = 29/169 (17%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
                ++ G    +            E  +   +P+H A+  G+   +RE L        
Sbjct: 48  NWWKGTSKGRTGLIPSNYV------AEQAESIDNPLHEAAKRGNLSWLRECLD------- 94

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQF 136
                 N       T L+ A   G   ++  + +     +       DTALH A      
Sbjct: 95  -NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYA 153

Query: 137 EAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
           + + +L+   +G +     ++++ +      +AT        +   G  
Sbjct: 154 DIVQLLLA--KGART----DLRNIEKKLAFDMATNAACASLLKKKQGTD 196

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 83.8 bits (208), Expect = 3e-19
 Identities = 29/172 (16%), Positives = 64/172 (37%), Gaps = 34/172 (19%)

Query: 14  VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRE 73
           V  +A    NPLH A+  G++ +++E ++ R  + + +++ G + ++ A   GH  +V  
Sbjct: 66  VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEM 124

Query: 74  LLKVEQKLCHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIE---DVTIQH 123
           L         Q   E N       T LH AA KG   ++ ++L      +       +++
Sbjct: 125 LFT-------QPNIELNQQNKLGDTALHAAAWKGYADIV-QLL------LAKGARTDLRN 170

Query: 124 D---TALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK 172
                A  +A        +            + +  + + +       +  +
Sbjct: 171 IEKKLAFDMATNAACASLLKKKQG------TDAVRTLSNAEDYLDDEDSDLE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 65.3 bits (160), Expect = 1e-12
 Identities = 21/144 (14%), Positives = 40/144 (27%), Gaps = 29/144 (20%)

Query: 49  HEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGK 101
            +  + G   +  A          EL          +  +         T       KG+
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYI--------EEGDIIYITDMSDTNWWKGTSKGR 57

Query: 102 VHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQ 161
             ++          + +     D  LH A K      +   ++      R  + N  D+ 
Sbjct: 58  TGLIPSN------YVAEQAESIDNPLHEAAKRGNLSWLRECLD-----NRVGV-NGLDKA 105

Query: 162 GNTVLHLATRKKQRK--ELLLGHG 183
           G+T L+ A     +   E+L    
Sbjct: 106 GSTALYWACHGGHKDIVEMLFTQP 129

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 10/82 (12%), Positives = 29/82 (35%), Gaps = 6/82 (7%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK--VEQKL 81
            LH A+  G+ D V+ ++          N +      +A++     ++++       + L
Sbjct: 143 ALHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL 201

Query: 82  CHQQGPEKNTPLHCAAIKGKVH 103
            + +          + ++   H
Sbjct: 202 SNAED---YLDDEDSDLEHHHH 220

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 87.9 bits (219), Expect = 3e-20
 Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 31/169 (18%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
            LH A    +VD VK ++    ++ ++ + +G+ P+H A+S G+  +   L+        
Sbjct: 76  ALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLI-------- 126

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQF 136
            QG           TPL  A  +    +L +        +    +  + A     +    
Sbjct: 127 SQGAHVGAVNSEGDTPLDIAEEEAMEELL-QNE------VNRQGVDIEAARKEEERIMLR 179

Query: 137 EAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
           +A   L +               + G T LH+A  K   +  +LL+   
Sbjct: 180 DARQWLNS-----GHIND-VRHAKSGGTALHVAAAKGYTEVLKLLIQAR 222

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 76.8 bits (190), Expect = 3e-16
 Identities = 30/169 (17%), Positives = 47/169 (27%), Gaps = 31/169 (18%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PL +A      + ++  +N           D  +       I      + L         
Sbjct: 142 PLDIAEEEAMEELLQNEVN-------RQGVDIEAARKEEERIMLRDARQWLNS------- 187

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQF 136
                         T LH AA KG   VL  ++ A  + +        T LH A    + 
Sbjct: 188 -GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKE 245

Query: 137 EAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATR--KKQRKELLLGHG 183
           EA  +LV               ++ G T   +A        +EL     
Sbjct: 246 EACRILVE--NLCD----MEAVNKVGQTAFDVADEDILGYLEELQKKQN 288

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 76.4 bits (189), Expect = 5e-16
 Identities = 28/182 (15%), Positives = 61/182 (33%), Gaps = 32/182 (17%)

Query: 14  VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRE 73
           +K+   ++     +    G    ++  +  R     +V  D  +    A S G T  V  
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKT--KVKFDDGAVFLAACSSGDTEEVLR 58

Query: 74  LLKVEQKLCHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD-- 124
           LL+        +G + N       T LH A I   V ++  ++        ++    +  
Sbjct: 59  LLE--------RGADINYANVDGLTALHQACIDDNVDMVKFLVENGA----NINQPDNEG 106

Query: 125 -TALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLG 181
              LH A      +    L++     +   +    + +G+T L +A  +   +  +  + 
Sbjct: 107 WIPLHAAASCGYLDIAEYLIS-----QGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVN 160

Query: 182 HG 183
             
Sbjct: 161 RQ 162

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 64.4 bits (158), Expect = 5e-12
 Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 23/159 (14%)

Query: 12  FLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVV 71
             V  + +               D  + + +   +      + G + +H+A++ G+T V+
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND-VRHAKSGGTALHVAAAKGYTEVL 215

Query: 72  RELLKVEQKLCHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD 124
           + L+        Q   + N       TPLH AA  GK      ++    + +E V     
Sbjct: 216 KLLI--------QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQ 266

Query: 125 TALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGN 163
           TA  +A ++       +        K+  + + K E+ +
Sbjct: 267 TAFDVADEDILGYLEELQK------KQNLLHSEKREKKS 299

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 88.5 bits (220), Expect = 5e-20
 Identities = 33/175 (18%), Positives = 60/175 (34%), Gaps = 25/175 (14%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQD--GFSPMHIASSIGHTGVVRELLKVEQKL 81
            LH   A G     + I     +    +       + +H  +S        +L+  E K 
Sbjct: 97  KLHTE-AAGSYAITEPITRESVN----IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 151

Query: 82  CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
           C   G + N       TPL  A +  +  +++ ++ A  +          +ALH A  N 
Sbjct: 152 CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANR 210

Query: 135 QFEAITVLV-NWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK-----ELLLGHG 183
            F  +  ++ +        +I    D  G T L +    + R      +LL+  G
Sbjct: 211 DFGMMVYMLNSTKLKG---DI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEKG 261

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 88.1 bits (219), Expect = 8e-20
 Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 20/174 (11%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLA--HEVNQDGFSPMHIASSIGHTGVVR--ELL---- 75
            LH A+A      +  ++N         E++++G + + I +       V   +LL    
Sbjct: 202 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKG 261

Query: 76  -KVEQKLCHQQGPEKN---TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAI 131
            KV+     ++  EK    T LH AA    + ++  ++       +       T + LA 
Sbjct: 262 AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA 321

Query: 132 KNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
           +  + E +  L+   +G   E      D   +T   LA         ++     
Sbjct: 322 QEGRIEVVMYLIQ--QGASVEA----VDATDHTARQLAQANNHHNIVDIFDRCR 369

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 86.2 bits (214), Expect = 3e-19
 Identities = 31/179 (17%), Positives = 62/179 (34%), Gaps = 30/179 (16%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PL +A        V  ++    D     N+   S +H A++    G++  +L   +    
Sbjct: 169 PLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTK---- 223

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLS--EML--------SACPECIEDVTIQHDTA 126
               +         T L   A       ++  ++L               +    +  TA
Sbjct: 224 -LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA 282

Query: 127 LHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
           LH A + +    +  LV   +G  +    + +DE G T + LA ++ + +    L+  G
Sbjct: 283 LHYAAQVSNMPIVKYLVGE-KGSNK----DKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 336

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 83.8 bits (208), Expect = 2e-18
 Identities = 30/187 (16%), Positives = 65/187 (34%), Gaps = 39/187 (20%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLA-------HEVNQDGFSPMHIASSIGHTGVVRELL 75
             LH  ++    +  +++I              + ++ D  +P+ +A       +V  L+
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM 186

Query: 76  KVEQKLCHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPEC--IEDVTIQHDTA 126
           K         G +         + LH AA      ++  ML++      IE++     TA
Sbjct: 187 K--------AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA 238

Query: 127 LHLAIKNNQFEAITVL---------VNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK- 176
           L +   N   + +            V++    +++     +  +G T LH A +      
Sbjct: 239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS----EKYKGRTALHYAAQVSNMPI 294

Query: 177 -ELLLGH 182
            + L+G 
Sbjct: 295 VKYLVGE 301

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 67.7 bits (166), Expect = 7e-13
 Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 22/167 (13%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
           + L  AS  G++   +           E+      P       G+  +  +      ++ 
Sbjct: 39  HSLLEASYDGYIKRQRN----------ELQHYSLYPNPQGYGNGNDFLG-DFNHTNLQIP 87

Query: 83  HQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD-TALHLAIKNNQFEAITV 141
            +  PE    LH  A  G   +   +       I+    +H+ T LH    N+  E    
Sbjct: 88  TEPEPESPIKLHTEA-AGSYAITEPITRESVNIIDP---RHNRTVLHWIASNSSAEKSED 143

Query: 142 LVNWIRGMKRE---EIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
           L+            ++ N  D   NT L LA   ++R+    L+  G
Sbjct: 144 LIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLMKAG 189

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 86.0 bits (214), Expect = 3e-19
 Identities = 35/185 (18%), Positives = 68/185 (36%), Gaps = 34/185 (18%)

Query: 14  VKLKALRKGNPLHVASAYGHVDFVKEI-----INVRPDLAHEVNQDGFSPMHIASSIGHT 68
             L    K + L  A+  G+ + +  +     +N      H  +    +P+H+A+     
Sbjct: 17  AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNC-----HASDGRKSTPLHLAAGYNRV 71

Query: 69  GVVRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTI 121
            +V+ LL        Q G + +        PLH A   G   V  E+L     C+  + +
Sbjct: 72  RIVQLLL--------QHGADVHAKDKGGLVPLHNACSYGHYEVT-ELLLKHGACVNAMDL 122

Query: 122 QHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK--KQRKELL 179
              T LH A   N+ E  ++L++   G        + +  G + + +A     ++R    
Sbjct: 123 WQFTPLHEAASKNRVEVCSLLLS--HGAD----PTLVNCHGKSAVDMAPTPELRERLTYE 176

Query: 180 LGHGT 184
               +
Sbjct: 177 FKGHS 181

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 82.9 bits (206), Expect = 4e-18
 Identities = 32/177 (18%), Positives = 61/177 (34%), Gaps = 29/177 (16%)

Query: 17  KALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTG---VVRE 73
               KG+ L  A+    +  VK+ + +      +  Q   + +H A +  H     V   
Sbjct: 174 TYEFKGHSLLQAAREADLAKVKKTLALEIINFKQ-PQSHETALHCAVASLHPKRKQVAEL 232

Query: 74  LLKVEQKLCHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTA 126
           LL+        +G   N       TPLH AA +    V+  +     + +  +     TA
Sbjct: 233 LLR--------KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTA 283

Query: 127 LHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELLLGHG 183
           LH A      +   +L++        +  ++   QG T   +     +  + +L   
Sbjct: 284 LHRAALAGHLQTCRLLLS-----YGSDP-SIISLQGFTAAQMGN---EAVQQILSES 331

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 63.3 bits (155), Expect = 2e-11
 Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 33/159 (20%)

Query: 24  PLHVASAYGH---VDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQK 80
            LH A A  H       + ++    ++ +E N+D  +P+H+A+   H  V+  L K    
Sbjct: 214 ALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHK---- 268

Query: 81  LCHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKN 133
                G + N       T LH AA+ G +     +LS   +    +++Q  TA  +  + 
Sbjct: 269 ----HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD-PSIISLQGFTAAQMGNEA 323

Query: 134 NQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK 172
            Q   ++                  D   +  L  A++ 
Sbjct: 324 VQQI-LSESTP----------MRTSDV--DYRLLEASKA 349

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 58.3 bits (142), Expect = 8e-10
 Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 24/118 (20%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLHVA+   H D ++ +      + + ++  G + +H A+  GH    R LL        
Sbjct: 250 PLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRAALAGHLQTCRLLL-------- 300

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
             G + +       T         +  +LSE        +    +  D  L  A K  
Sbjct: 301 SYGSDPSIISLQGFTAAQMGNEAVQQ-ILSESTP-----MRTSDV--DYRLLEASKAG 350

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 82.0 bits (204), Expect = 5e-19
 Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 37/174 (21%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
            L  A+  G  D V+ ++    D+ +  +  G++P+H+A+  GH  +V  LLK       
Sbjct: 17  KLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLK------- 68

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIE---DVTIQHD---TALHLA 130
             G + N       TPL  AA+ G + ++ E+L      ++   DV        T LHLA
Sbjct: 69  -NGADVNAVDHAGMTPLRLAALFGHLEIV-EVL------LKNGADVNANDMEGHTPLHLA 120

Query: 131 IKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGH 182
                 E + VL+         ++ N +D+ G T   ++         E+L   
Sbjct: 121 AMFGHLEIVEVLLK-----NGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 68.5 bits (169), Expect = 3e-14
 Identities = 37/147 (25%), Positives = 56/147 (38%), Gaps = 24/147 (16%)

Query: 46  DLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-------TPLHCAAI 98
              H    D    +  A+  G    VR L+          G + N       TPLH AA 
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGRDDEVRILMA--------NGADVNAEDASGWTPLHLAAF 56

Query: 99  KGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMK 158
            G + ++  +L    + +  V     T L LA      E + VL+         ++ N  
Sbjct: 57  NGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLK-----NGADV-NAN 109

Query: 159 DEQGNTVLHLATRKKQRK--ELLLGHG 183
           D +G+T LHLA      +  E+LL +G
Sbjct: 110 DMEGHTPLHLAAMFGHLEIVEVLLKNG 136

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 82.1 bits (204), Expect = 8e-19
 Identities = 32/175 (18%), Positives = 68/175 (38%), Gaps = 28/175 (16%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
             L  A+        + + +    +  EV+ +G +P++IA       + + L+       
Sbjct: 8   ALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEIAKALID------ 60

Query: 83  HQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQ 135
             +G + N       +P   A  +G+  +L+ ML      +         AL  A +   
Sbjct: 61  --RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH 118

Query: 136 FEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK-------ELLLGHG 183
            + + +L+    G  RE+I + +++ G T L  A   ++         +LL+ +G
Sbjct: 119 IDNVKLLLE--DG--REDI-DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG 168

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 77.9 bits (193), Expect = 2e-17
 Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 14/166 (8%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PL++A     ++  K +I+   D+ +  N    SP   A + G T ++  +LK      +
Sbjct: 42  PLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLN 100

Query: 84  QQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAI-----KNNQFEA 138
           +        L  AA KG +  +  +L    E I+       TAL  A+          + 
Sbjct: 101 KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160

Query: 139 ITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGH 182
           + +L+    G       ++KD  G T +  A +K   +  ++L  +
Sbjct: 161 VKLLME--NGAD----QSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 64.8 bits (159), Expect = 1e-12
 Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 35/148 (23%)

Query: 52  NQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGKVHV 104
             +  + +  A+      V   L             + +       TPL+ A     + +
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQD--------TTYQVDEVDTEGNTPLNIAVHNNDIEI 54

Query: 105 LSEMLSACPECIE---DVTIQ---HDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMK 158
            ++ L      I+   D+ +Q    D+    A    + E +  ++            N  
Sbjct: 55  -AKAL------IDRGADINLQNSISDSPYLYAGAQGRTEILAYMLK-----HATPDLNKH 102

Query: 159 DEQGNTVLHLATRKKQRK--ELLLGHGT 184
           +  G   L  A  K      +LLL  G 
Sbjct: 103 NRYGGNALIPAAEKGHIDNVKLLLEDGR 130

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 54.4 bits (132), Expect = 5e-09
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 20/91 (21%)

Query: 22  GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSI-----GHTGVVRELLK 76
           GN L  A+  GH+D VK ++    +     N  G++ +  A  +      +  +V+ L++
Sbjct: 107 GNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME 166

Query: 77  VEQKLCHQQGPEKN-------TPLHCAAIKG 100
                    G +++       T +  A  KG
Sbjct: 167 --------NGADQSIKDNSGRTAMDYANQKG 189

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 82.7 bits (205), Expect = 1e-18
 Identities = 35/188 (18%), Positives = 62/188 (32%), Gaps = 35/188 (18%)

Query: 24  PLHVASAYGHVDFVKEII----NVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK--- 76
            LH+A+ Y +++    ++     +  +       +G + +HIA    +  +VR LL    
Sbjct: 40  ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGA 99

Query: 77  ---------VEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIE---DVTIQHD 124
                    V     H        PL  AA  G   ++  +L      IE   D+  Q  
Sbjct: 100 SVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIV-RLL------IEHGADIRAQDS 152

Query: 125 ---TALHLAIKNNQFEAITVLVNWI--RGMKREE--IFNMKDEQGNTVLHLATRKKQRK- 176
              T LH+ I          + N +           +  + + QG T   LA  +     
Sbjct: 153 LGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVM 212

Query: 177 -ELLLGHG 183
            + L+   
Sbjct: 213 FQHLMQKR 220

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 81.9 bits (203), Expect = 2e-18
 Identities = 34/189 (17%), Positives = 66/189 (34%), Gaps = 42/189 (22%)

Query: 24  PLHVASAYGHVDFVKEI-------INVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK 76
           PL +A+    V  + ++       ++ R          G + +HIA+   +      L++
Sbjct: 6   PLLLAAKENDVQALSKLLKFEGCEVHQR-------GAMGETALHIAALYDNLEAAMVLME 58

Query: 77  ----VEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLS------------ACPECIEDVT 120
               +  +    +  E  T LH A I   V+++  +L+                   ++ 
Sbjct: 59  AAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLI 118

Query: 121 IQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK------KQ 174
              +  L  A      E + +L+         +I   +D  GNTVLH+   +       Q
Sbjct: 119 YYGEHPLSFAACVGSEEIVRLLIE-----HGADI-RAQDSLGNTVLHILILQPNKTFACQ 172

Query: 175 RKELLLGHG 183
              LLL + 
Sbjct: 173 MYNLLLSYD 181

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 31/147 (21%), Positives = 50/147 (34%), Gaps = 23/147 (15%)

Query: 55  GFSPMHIASSIGHTGVVRELLKVEQKLCH-----QQGPEKNTPLHCAAIKGKVHVLSEML 109
             SP+ +A+       + +LL             Q+G    T LH AA+   +     ++
Sbjct: 3   WESPLLLAAKENDVQALSKLL-----KFEGCEVHQRGAMGETALHIAALYDNLEAAMVLM 57

Query: 110 SACPECIEDVTIQHD----TALHLAIKNNQFEAITVL------VNWI-RGMKREEIFNMK 158
            A PE + +          TALH+A+ N     +  L      V+    G       +  
Sbjct: 58  EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNL 117

Query: 159 DEQGNTVLHLATRKKQRK--ELLLGHG 183
              G   L  A      +   LL+ HG
Sbjct: 118 IYYGEHPLSFAACVGSEEIVRLLIEHG 144

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 83.0 bits (206), Expect = 2e-18
 Identities = 34/184 (18%), Positives = 58/184 (31%), Gaps = 38/184 (20%)

Query: 24  PLHVASAYGHVDFVKEIIN--VRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
            LH+A  + H  F+  ++      +     N  G + +H+A+ +G    V +L       
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA----- 66

Query: 82  CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVT-------------I 121
               G           T LH A           +L   P    D +              
Sbjct: 67  ---AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123

Query: 122 QHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELL 179
            H  A   +  N + E      +      R ++   ++  G+T LH+A   K  +   LL
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDED-----WRLQL-EAENYDGHTPLHVAVIHKDAEMVRLL 177

Query: 180 LGHG 183
              G
Sbjct: 178 RDAG 181

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 75.7 bits (187), Expect = 7e-16
 Identities = 29/158 (18%), Positives = 43/158 (27%), Gaps = 25/158 (15%)

Query: 24  PLHVASAYGHVDFVKEI-INVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
           P  V S     +  +    + R  L    N DG +P+H+A       +VR L        
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRLQL-EAENYDGHTPLHVAVIHKDAEMVRLLR------- 178

Query: 83  HQQGPEKN--------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
              G + N        TPLH A       VL  +L A  +          T L  A+   
Sbjct: 179 -DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRP 236

Query: 135 QFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK 172
                 +L                     +    +   
Sbjct: 237 NPILARLLRA-----HGAPE-PEDGGDKLSPCSSSGSD 268

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 16/123 (13%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLHVA  +   + V+ + +   DL       G +P+H+A       V+  LLK       
Sbjct: 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK------- 213

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQF 136
             G +         TPL  A ++    +   + +       +      +    +  ++  
Sbjct: 214 -AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP-EPEDGGDKLSPCSSSGSDSDS 271

Query: 137 EAI 139
           +  
Sbjct: 272 DNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 13/146 (8%)

Query: 50  EVNQDGFSPMHIASSIGHTGVVRELLK--VEQKLCHQQGPEKNTPLHCAAIKGKVHVLSE 107
            V +DG + +H+A    H   +  LL      +    Q     T LH AAI G+   + +
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 108 MLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLV----NWIRGMKREEIFNMKD---E 160
           + +A    +        TALHLA +        VL+    +  R      +   +D   +
Sbjct: 64  LYAAGAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 161 QGNTVLHLATRKKQRKE---LLLGHG 183
             +    + ++     E         
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWR 148

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 61.0 bits (149), Expect = 6e-11
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 10/91 (10%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK----VEQ 79
           PLH+A        ++ ++    D        G +P+  A    +  + R L        +
Sbjct: 195 PLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE 253

Query: 80  KLCHQQGPEKNTPLHCAAIKGKVHVLSEMLS 110
                 G +K +P   +          E   
Sbjct: 254 D-----GGDKLSPCSSSGSDSDSDNRDEGDE 279

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 81.9 bits (203), Expect = 2e-18
 Identities = 35/189 (18%), Positives = 58/189 (30%), Gaps = 46/189 (24%)

Query: 15  KLKALRKGN----PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGV 70
           K+   R          +    GH         +  D    V  +  +P   A+       
Sbjct: 5   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKADEQA 60

Query: 71  VRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIE---DVT 120
           + +LL         +  + +       T L   A  G    +  +L       E   D+ 
Sbjct: 61  LSQLL---------EDRDVDAVDENGRTALLFVAGLGSDKCV-RLL------AEAGADLD 104

Query: 121 IQHD----TALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK--KQ 174
            +      TALH+A    + E +  LV         +I  ++DE+G T L LA       
Sbjct: 105 HRDMRGGLTALHMAAGYVRPEVVEALVE-----LGADI-EVEDERGLTALELAREILKTT 158

Query: 175 RKELLLGHG 183
            K   +  G
Sbjct: 159 PKGNPMQFG 167

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 75.7 bits (187), Expect = 3e-16
 Identities = 24/171 (14%), Positives = 45/171 (26%), Gaps = 39/171 (22%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
            L   +  G    V+ +     DL H   + G + +H+A+      VV  L++       
Sbjct: 80  ALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE------- 132

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLS--ACPECIEDVTIQHDTALHLAIKNN 134
             G +         T L  A    K       +           + ++    +       
Sbjct: 133 -LGADIEVEDERGLTALELAREILKTTPKGNPMQFGR------RIGLEKVINVLEGQVFE 185

Query: 135 QFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK--KQRKELLLGHG 183
             E   +                K  +G  V +L   K     + +   H 
Sbjct: 186 YAEVDEI--------------VEKRGKGKDVEYLVRWKDGGDCEWVKGVHV 222

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 59.9 bits (146), Expect = 1e-10
 Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 27/133 (20%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
            LH+A+ Y   + V+ ++ +  D+    ++ G + + +A  I  T      ++  +++  
Sbjct: 114 ALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNPMQFGRRI-- 170

Query: 84  QQGPEKNTPLHCAAIKGKVHVLS-----------EMLSACPECIEDV--TIQH------- 123
             G EK   +    +     V             E L    +  +       H       
Sbjct: 171 --GLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAK 228

Query: 124 --DTALHLAIKNN 134
             +  L  A+  +
Sbjct: 229 DYEDGLEYAVAES 241

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 79.8 bits (198), Expect = 3e-18
 Identities = 33/176 (18%), Positives = 54/176 (30%), Gaps = 42/176 (23%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
              +    GH         +  D    V  +  +P   A+       + +LL+       
Sbjct: 17  EYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKADEQALSQLLE------- 65

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIE---DVTIQHD----TALHL 129
               + +       T L   A  G    +  +L       E   D+  +      TALH+
Sbjct: 66  --DRDVDAVDENGRTALLFVAGLGSDKCV-RLL------AEAGADLDHRDMRGGLTALHM 116

Query: 130 AIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK--KQRKELLLGHG 183
           A    + E +  LV    G        ++DE+G T L LA        K   +  G
Sbjct: 117 AAGYVRPEVVEALVE--LGAD----IEVEDERGLTALELAREILKTTPKGNPMQFG 166

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 62.5 bits (153), Expect = 6e-12
 Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 23/148 (15%)

Query: 43  VRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN----TPLHCAAI 98
           V   +      +G     I    GH+                   +      TP   AA 
Sbjct: 2   VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPS--------SYIAADVVSEYETPWWTAAR 53

Query: 99  KGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMK 158
           K     LS++L      ++ V     TAL         + + +L          ++ + +
Sbjct: 54  KADEQALSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAE-----AGADL-DHR 105

Query: 159 DEQ-GNTVLHLATRKKQRK--ELLLGHG 183
           D + G T LH+A    + +  E L+  G
Sbjct: 106 DMRGGLTALHMAAGYVRPEVVEALVELG 133

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 81.9 bits (202), Expect = 9e-18
 Identities = 30/177 (16%), Positives = 57/177 (32%), Gaps = 17/177 (9%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHE-VNQDGFSPMHIASSI-GHTGVVRELLKVEQKL 81
              +A+  GH+  +  +  + P  A   +  + +     A+   GH  V+  LL     L
Sbjct: 166 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML 225

Query: 82  ------CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD-----TALHLA 130
                   + G +   P     +     +      + P+ + D+  + +       L   
Sbjct: 226 AYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNL 285

Query: 131 IKNNQFEAITVLVN--WIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
           I+ N    +  +     I G+K            N +L LA R   +    LLL   
Sbjct: 286 IRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP 342

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 74.2 bits (182), Expect = 5e-15
 Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 13/152 (8%)

Query: 2   KKETAIKAFIFLVKLKALRKGNPLHVASAYGH---VDFVKEIINVRPDLAHEVNQDGFSP 58
                 K        K ++      VA+  G    +D +  ++     +   +  + +  
Sbjct: 73  HYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK-VIQAENYQA 131

Query: 59  MHIASSIGHTGVVRELLK----VEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPE 114
             +A+  GH  V+  L +        +   +          AA  G +HVL+ +    P 
Sbjct: 132 FRLAAENGHLHVLNRLCELAPTEIMAMIQAEN---YHAFRLAAENGHLHVLNRLCELAPT 188

Query: 115 -CIEDVTIQHDTALHL-AIKNNQFEAITVLVN 144
                +  ++  A    A+       I  L++
Sbjct: 189 EATAMIQAENYYAFRWAAVGRGHHNVINFLLD 220

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 58.8 bits (142), Expect = 6e-10
 Identities = 24/157 (15%), Positives = 48/157 (30%), Gaps = 12/157 (7%)

Query: 21  KGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTG---VVRELLKV 77
           +     +   Y H +   + +      AH+          +A+  G +     +  LL  
Sbjct: 61  EQVRQLLCLYYAHYNRNAKQLW---SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTS 117

Query: 78  EQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPE-CIEDVTIQHDTALHLAIKNNQF 136
           ++ +      E       AA  G +HVL+ +    P   +  +  ++  A  LA +N   
Sbjct: 118 DEIVK-VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHL 176

Query: 137 EAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKK 173
             +  L          E   M   +       A   +
Sbjct: 177 HVLNRLCEL----APTEATAMIQAENYYAFRWAAVGR 209

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 12/100 (12%)

Query: 13  LVKLKALRKGN-PLHVASAYGH---VDFVKEIINVRP--DLAH--EVNQDGFSPMHIASS 64
           LV      +G   L           +D ++ ++++     LA    +  D    + +A  
Sbjct: 269 LVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR 328

Query: 65  IGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHV 104
           +G+ G    LL +   L       K    +     G++ +
Sbjct: 329 LGNQGACALLLSIPSVLALT----KANNYYINETGGRLDL 364

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 43.0 bits (101), Expect = 7e-05
 Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 21  KGN-PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK 76
             N  L +A   G+      ++++ P +      + +   +I  + G   +    L+
Sbjct: 318 DANELLRLALRLGNQGACALLLSI-PSVLALTKANNY---YINETGGRLDLRAVALE 370

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 79.6 bits (197), Expect = 1e-17
 Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 31/172 (18%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
            L  A+  G ++ V++ +    D   + N++G + +H A    +  +V  L+        
Sbjct: 24  LLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLI-------- 74

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLS--ACPECIEDVTIQH-DTALHLA--I 131
             G   N       TPLHCAA      +   ++   A    I   T+    TA       
Sbjct: 75  TAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA---AIFATTLSDGATAFEKCDPY 131

Query: 132 KNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELLLGHG 183
           +    +  T L +       E+   + +      L   +  +   EL    G
Sbjct: 132 REGYADCATYLAD------VEQSMGLMNSGAVYALWDYS-AEFGDELSFREG 176

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 68.8 bits (169), Expect = 8e-14
 Identities = 21/153 (13%), Positives = 44/153 (28%), Gaps = 15/153 (9%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
            LH A    +   V  +I    ++ +  +  G++P+H A+S   T +   L++    +  
Sbjct: 57  ALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA 115

Query: 84  QQGPEKNTPLHCAAIKGKVHV-LSEMLSACPECIEDVTIQHDTALHLAIKNNQFE---AI 139
               +  T         + +   +  L+   + +  +      AL         E     
Sbjct: 116 TTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFRE 175

Query: 140 TVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK 172
              V              +D    T    A   
Sbjct: 176 GESVTV----------LRRDGPEETDWWWAALH 198

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 61.1 bits (149), Expect = 4e-11
 Identities = 15/116 (12%), Positives = 29/116 (25%), Gaps = 5/116 (4%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSI--GHTGVVRELLKVEQKL 81
           PLH A++         ++     +      DG +          G+      L  VEQ +
Sbjct: 90  PLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM 149

Query: 82  CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFE 137
                      L   + +    +           +       +T    A  + Q  
Sbjct: 150 -GLMNSGAVYALWDYSAEFGDELSFR-EGESVT-VLRRDGPEETDWWWAALHGQEG 202

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 57.3 bits (139), Expect = 7e-10
 Identities = 25/154 (16%), Positives = 42/154 (27%), Gaps = 40/154 (25%)

Query: 50  EVNQDGFSPM---HIASSIGHTGVVRELLKVEQKLCHQQGPEKN-------TPLHCAAIK 99
           +  +   +P+     A+  G   VV++ +K        +  + +       T LH A   
Sbjct: 13  KARRARLNPLVLLLDAALTGELEVVQQAVK--------EMNDPSQPNEEGITALHNAICG 64

Query: 100 GKVHVLSEMLSACPECIE---DVTIQHD---TALHLAIKNNQFEAITVLVNWIRGMKREE 153
               ++ + L      I    +V        T LH A   N       LV          
Sbjct: 65  ANYSIV-DFL------ITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQ-----HGAA 112

Query: 154 IFNMKDEQGNTVLHLATRKKQRK----ELLLGHG 183
           IF      G T        ++        L    
Sbjct: 113 IFATTLSDGATAFEKCDPYREGYADCATYLADVE 146

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 79.1 bits (195), Expect = 2e-17
 Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 9/160 (5%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH+A++ G  + VK ++     + + VNQ+G +P+H A+S     +   LL+       
Sbjct: 76  PLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-D 133

Query: 84  QQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLV 143
            +     T +H AA KG + ++  +L            + +T LHLA    + E    LV
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLV 192

Query: 144 NWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELLLGHG 183
                  +     +++++  T L +A          L  G
Sbjct: 193 T------QGASIYIENKEEKTPLQVAKGGLGLILKRLAEG 226

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 78.8 bits (194), Expect = 2e-17
 Identities = 40/170 (23%), Positives = 63/170 (37%), Gaps = 25/170 (14%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
             ++A +    +  + I+  +       +QD  + +H A S GHT +V  LL        
Sbjct: 10  ICNLAYSGKLDELKERILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLL-------- 60

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQF 136
           Q G   N       +PLH AA  G   ++  +L      +  V     T LH A   N+ 
Sbjct: 61  QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRH 119

Query: 137 EAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGT 184
           E   +L+            + KD    T +H A  K   K   +LL +  
Sbjct: 120 EIAVMLLE------GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 55.3 bits (133), Expect = 3e-09
 Identities = 27/148 (18%), Positives = 46/148 (31%), Gaps = 36/148 (24%)

Query: 52  NQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGKVHV 104
                   ++A S     +   +L                      T LH A   G   +
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILA--------DKSLATRTDQDSRTALHWACSAGHTEI 55

Query: 105 LSEMLSACPECIE---DVTIQHD---TALHLAIKNNQFEAITVLVNWIRGMKREEIFNMK 158
           + E L      ++    V  + D   + LH+A      E +  L+       +    N  
Sbjct: 56  V-EFL------LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLV------KGAHVNAV 102

Query: 159 DEQGNTVLHLATRKKQRK--ELLLGHGT 184
           ++ G T LH A  K + +   +LL  G 
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGA 130

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
             +H A+A G++  V  ++  +    +  + +G +P+H+A         + L+     + 
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVTQGASI- 198

Query: 83  HQQGPEKNTPLHCAA 97
           + +  E+ TPL  A 
Sbjct: 199 YIENKEEKTPLQVAK 213

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 76.7 bits (190), Expect = 2e-17
 Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 29/132 (21%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
            LH+AS  G +  V+ ++    D  +  +  G++P+H A + GH  VV  LL+       
Sbjct: 13  LLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQ------- 64

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIE---DVTIQHD---TALHLA 130
                 N       +PLH AA  G V ++ ++L      +         +      +   
Sbjct: 65  -HKALVNTTGYQNDSPLHDAAKNGHVDIV-KLL------LSYGASRNAVNIFGLRPVDYT 116

Query: 131 IKNNQFEAITVL 142
              +    + + 
Sbjct: 117 DDESMKSLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 73.6 bits (182), Expect = 2e-16
 Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 24/141 (17%)

Query: 52  NQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGKVHV 104
           N  G + +HIAS  G    V  LL        Q G + N       TPLH A   G + V
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLL--------QNGSDPNVKDHAGWTPLHEACNHGHLKV 58

Query: 105 LSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNT 164
           +  +L      +     Q+D+ LH A KN   + + +L++   G  R    N  +  G  
Sbjct: 59  VELLLQHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLS--YGASR----NAVNIFGLR 111

Query: 165 VLHLATRKKQRK--ELLLGHG 183
            +     +  +    L   + 
Sbjct: 112 PVDYTDDESMKSLLLLPEKNE 132

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 49.7 bits (120), Expect = 8e-08
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK 76
           PLH A+  GHVD VK +++      + VN  G  P+          ++    K
Sbjct: 79  PLHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEK 130

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 76.3 bits (189), Expect = 4e-17
 Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 24/158 (15%)

Query: 22  GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
           G  L  A+  G  D V+ ++          +  G SP+H+A+  GH      LL+     
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLR----- 55

Query: 82  CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
               G  ++       TPLH AA +G  +++  +L    + +    +   TALH A ++N
Sbjct: 56  ---AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHN 111

Query: 135 QFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK 172
             E + +L+         ++ + + +   T   ++   
Sbjct: 112 HQEVVELLIK-----YGADV-HTQSKFCKTAFDISIDN 143

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 63.6 bits (156), Expect = 1e-12
 Identities = 34/138 (24%), Positives = 49/138 (35%), Gaps = 23/138 (16%)

Query: 54  DGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN------TPLHCAAIKGKVHVLSE 107
           D    +  A+  G    VR L+          G          +PLH AA  G       
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMA--------NGAPFTTDWLGTSPLHLAAQYGHFSTTEV 52

Query: 108 MLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLH 167
           +L A     +  T    T LH+A        + VL+         ++ N KD    T LH
Sbjct: 53  LLRAGVS-RDARTKVDRTPLHMAASEGHANIVEVLLK-----HGADV-NAKDMLKMTALH 105

Query: 168 LATRKKQRK--ELLLGHG 183
            AT    ++  ELL+ +G
Sbjct: 106 WATEHNHQEVVELLIKYG 123

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 79.7 bits (196), Expect = 4e-17
 Identities = 27/176 (15%), Positives = 58/176 (32%), Gaps = 19/176 (10%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGH---TGVVRELLKVEQK 80
           PLH  ++  +++ VK ++    +     +  G S +  A    +   +G    LL     
Sbjct: 134 PLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP 192

Query: 81  LCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH-----------DTALHL 129
               +     T LH   I   +   S       + +    ++              +   
Sbjct: 193 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 252

Query: 130 AIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
                + ++I   ++         + N +D  G+T L++A R       + LL +G
Sbjct: 253 DKNGERKDSILENLD--LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 306

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 60.0 bits (145), Expect = 2e-10
 Identities = 16/164 (9%), Positives = 46/164 (28%), Gaps = 23/164 (14%)

Query: 23  NPLHVASAYGH---VDFVKEIINVRPDLAHEVNQDGFSPMHIA-----------SSIGHT 68
           + L  A    +       + +++         +    + +H             ++  + 
Sbjct: 166 SCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYL 225

Query: 69  GVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH---DT 125
            ++   +  +Q    Q G  +           +   + E L         +  Q    DT
Sbjct: 226 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT 285

Query: 126 ALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
            L++A +      +  L++   G        + ++ G   +   
Sbjct: 286 CLNIAARLGNISIVDALLD--YGAD----PFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 52.7 bits (126), Expect = 5e-08
 Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 19/127 (14%)

Query: 88  EKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIK-NNQFEAITVLVNWI 146
             NTPLH       + ++  ++              ++ L  A+K  N +++ T      
Sbjct: 130 HGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTF----- 183

Query: 147 RGMKREEIF-------NMKDEQGNTVLHLATRKKQRKELLLGHGTYSSGRLELIALHQQR 199
                E +         ++D    T+LH                 Y    +  I   Q R
Sbjct: 184 -----EALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR 238

Query: 200 QLDSRHD 206
            + S  +
Sbjct: 239 PIQSGTN 245

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 18/91 (19%)

Query: 17  KALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVN---QDGFSPMHIASSIGHTGVVRE 73
               +             D + E ++++  +A+ +N    +G + ++IA+ +G+  +V  
Sbjct: 242 SGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA 301

Query: 74  LLKVEQKLCHQQGPEKN-------TPLHCAA 97
           LL          G +          P+   A
Sbjct: 302 LLD--------YGADPFIANKSGLRPVDFGA 324

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 76.3 bits (189), Expect = 8e-17
 Identities = 32/179 (17%), Positives = 60/179 (33%), Gaps = 47/179 (26%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PL VA   G  + + +++     L  + + +G + +  A      G+  +LL        
Sbjct: 38  PLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLS------- 89

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH-----------DT 125
            +G   N       TPL  + I G   + S  L           ++H           +T
Sbjct: 90  -KGSNVNTKDFSGKTPLMWSIIFGYSEM-SYFL-----------LEHGANVNDRNLEGET 136

Query: 126 ALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGH 182
            L +A K  + E +  L+    G         +D  G T    A    +++  ++    
Sbjct: 137 PLIVASKYGRSEIVKKLLE--LGADISA----RDLTGLTAEASARIFGRQEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 71.7 bits (177), Expect = 5e-15
 Identities = 24/169 (14%), Positives = 55/169 (32%), Gaps = 31/169 (18%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
              +         +  + N R       +    +P+ +A  +G    + +L++       
Sbjct: 11  VEKIKDEKSINQNLDFLRNYR-------DSYNRTPLMVACMLGMENAIDKLVE------- 56

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQF 136
               +         T L  A    ++ +  ++LS     +        T L  +I     
Sbjct: 57  -NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKTPLMWSIIFGYS 114

Query: 137 EAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
           E    L+          + N ++ +G T L +A++  + +  + LL  G
Sbjct: 115 EMSYFLLE-----HGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELG 157

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 45.5 bits (109), Expect = 5e-06
 Identities = 22/97 (22%), Positives = 30/97 (30%), Gaps = 15/97 (15%)

Query: 89  KNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRG 148
                     K     L + L             + T L +A       AI  LV     
Sbjct: 8   GEIVEKIKDEKSINQNL-DFL------RNYRDSYNRTPLMVACMLGMENAIDKLVE--NF 58

Query: 149 MKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
            K E+    KD +G+T L  A +  +    E LL  G
Sbjct: 59  DKLED----KDIEGSTALIWAVKNNRLGIAEKLLSKG 91

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 74.0 bits (183), Expect = 1e-16
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 29/125 (23%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
                A   G +D VK+ +    D+ +   + G  P+H A+  G   ++  LL       
Sbjct: 9   KEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLL------ 61

Query: 83  HQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIE---DVTIQHD---TALHL 129
             +G + N       TPL  A  +G V  + ++L      +    D T++     TA   
Sbjct: 62  --KGADINAPDKHHITPLLSAVYEGHVSCV-KLL------LSKGADKTVKGPDGLTAFEA 112

Query: 130 AIKNN 134
                
Sbjct: 113 TDNQA 117

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 65.5 bits (161), Expect = 2e-13
 Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 23/136 (16%)

Query: 51  VNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGKVH 103
           +          A   G    V++ +         +G + N        PLH AA  G++ 
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVA--------KGEDVNRTLEGGRKPLHYAADCGQLE 54

Query: 104 VLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGN 163
           +L  +L    + I      H T L  A+       + +L++  +G  +     +K   G 
Sbjct: 55  ILEFLLLKGAD-INAPDKHHITPLLSAVYEGHVSCVKLLLS--KGADK----TVKGPDGL 107

Query: 164 TVLHLATRKKQRKELL 179
           T       +   K LL
Sbjct: 108 TAFEATDNQA-IKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 47.8 bits (115), Expect = 3e-07
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVR 72
           PL  A   GHV  VK +++   D       DG +      +     +++
Sbjct: 76  PLLSAVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDNQAIKALLQ 123

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 23/183 (12%), Positives = 55/183 (30%), Gaps = 23/183 (12%)

Query: 17  KALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQD--GFSPMHIASSIGHTGVVREL 74
            A+ +   +  A+  G  +   E+     +    V +    +  +   +      +   L
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 75  LK----VEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIE---DVTIQ---HD 124
           +     ++ +       E  T        G   +       C   +E   D+T     + 
Sbjct: 62  INKGADIKSR-----TKEGTTLFFPLFQGGGNDIT-GTTELCKIFLEKGADITALYKPYK 115

Query: 125 TALHLAIKNNQFEAI--TVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLL 180
             +   I N   +      L   I      ++  +KD+ G T L    R ++    +++ 
Sbjct: 116 IVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTALEFVKRCQKPIALKMME 174

Query: 181 GHG 183
            + 
Sbjct: 175 DYI 177

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 76.4 bits (188), Expect = 2e-16
 Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 40/177 (22%)

Query: 23  NPLHVASAYGHVDFVKE------IINVR------PDLAHEVNQDGFSPMHIASSIGHTGV 70
           + LH+A     +  VK        +++R                G  P+ +A+      V
Sbjct: 92  SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 151

Query: 71  VRELLKVEQKLC--HQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALH 128
           V  LL+   +           NT LH   +                         ++AL 
Sbjct: 152 VTYLLENPHQPASLEATDSLGNTVLHALVMIAD------------------NSPENSALV 193

Query: 129 LAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
           + + +   +    L          ++  + + QG T L LA ++ + +    +L   
Sbjct: 194 IHMYDGLLQMGARLC------PTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 70.2 bits (172), Expect = 3e-14
 Identities = 26/187 (13%), Positives = 57/187 (30%), Gaps = 35/187 (18%)

Query: 23  NPLHVASAYGHVDFVKEIIN-------VRPDLAHEVNQDGFSPMHIA---SSIGHTGVVR 72
           + L    + G  + +  ++           D A+     G + +  A      G    + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 73  ELLKVEQKLCHQQGP----------EKNTPLHCAAIKGKVHVLSEMLSA----------- 111
            LL++++   + +            + ++ LH A  K  +  +  ++             
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 112 -CPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLAT 170
              +         +  L LA    Q++ +T L+      +   +    D  GNTVLH   
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE--NPHQPASL-EATDSLGNTVLHALV 180

Query: 171 RKKQRKE 177
                  
Sbjct: 181 MIADNSP 187

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 54.8 bits (132), Expect = 6e-09
 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 9/71 (12%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
            L +    G +     +           N  G +P+ +A+  G   + R +L        
Sbjct: 191 ALVIHMYDGLLQMGARLCPTVQLE-EISNHQGLTPLKLAAKEGKIEIFRHIL-------- 241

Query: 84  QQGPEKNTPLH 94
           Q+        H
Sbjct: 242 QREFSGAAAHH 252

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 52.5 bits (126), Expect = 4e-08
 Identities = 28/155 (18%), Positives = 47/155 (30%), Gaps = 29/155 (18%)

Query: 58  PMHIASSIGHTGVVRELLKVEQKL-------CHQQGPEKNTPLHCAAI---KGKVHVLSE 107
            +    S G    +  LL+  +          + +G    T L  A +    G    +  
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64

Query: 108 MLSACPEC----------IEDVTIQHDTALHLAIKNNQFEAITVLVNW-------IRGMK 150
           +L    +             D   Q  +ALH+AI+    + + +LV           G  
Sbjct: 65  LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF 124

Query: 151 REEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
            ++        G   L LA   KQ      LL + 
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 73.1 bits (181), Expect = 2e-16
 Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 29/133 (21%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH+A+  GH++ VK ++    D+ +  +++G +P+H+A+  GH  VV+ LL+       
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE------- 56

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIE---DVTIQHD---TALHLA 130
             G + N       TPLH AA  G + V+ ++L      +E   DV  +     T LHLA
Sbjct: 57  -AGADVNAKDKNGRTPLHLAARNGHLEVV-KLL------LEAGADVNAKDKNGRTPLHLA 108

Query: 131 IKNNQFEAITVLV 143
            +N   E + +L+
Sbjct: 109 ARNGHLEVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 66.2 bits (163), Expect = 8e-14
 Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 36/147 (24%)

Query: 54  DGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGKVHVLS 106
           +G +P+H+A+  GH  VV+ LL+         G + N       TPLH AA  G + V+ 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLE--------AGADVNAKDKNGRTPLHLAARNGHLEVV- 51

Query: 107 EMLSACPECIE---DVTIQHD---TALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDE 160
           ++L      +E   DV  +     T LHLA +N   E + +L+    G       N KD+
Sbjct: 52  KLL------LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE--AGAD----VNAKDK 99

Query: 161 QGNTVLHLATRKKQRK--ELLLGHGTY 185
            G T LHLA R    +  +LLL  G Y
Sbjct: 100 NGRTPLHLAARNGHLEVVKLLLEAGAY 126

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 53.1 bits (129), Expect = 4e-09
 Identities = 19/54 (35%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKV 77
           PLH+A+  GH++ VK ++    D+ +  +++G +P+H+A+  GH  VV+ LL+ 
Sbjct: 71  PLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA 123

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 76.0 bits (187), Expect = 4e-16
 Identities = 31/214 (14%), Positives = 63/214 (29%), Gaps = 47/214 (21%)

Query: 24  PLHVASA---YGHVDFVKEIINVRPDL----------AHEVNQDGFSPMHIASSIGHTGV 70
            L  A      G  D +  +++V                +    G + +HIA    +  +
Sbjct: 57  CLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTL 116

Query: 71  VRELLK----VEQKLCHQQGPEKN---------TPLHCAAIKGKVHVLSEMLSACPECIE 117
           V  L++    V+         +            PL  AA   ++ ++ + L        
Sbjct: 117 VTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV-KFLLQNSWQPA 175

Query: 118 DVTIQHD---TALHLAIKNNQFEAITV----------LVNWIRGMKREEIFNMKDEQGNT 164
           D++ +     T LH  ++                   L+   +     ++  + + +G T
Sbjct: 176 DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLT 235

Query: 165 VLHLATR--KKQRKELLLGHGTYSSGRLELIALH 196
            L LA    K      +L    +     E    H
Sbjct: 236 PLALAASSGKIGVLAYILQREIH-----EPECRH 264

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 74.0 bits (182), Expect = 2e-15
 Identities = 23/179 (12%), Positives = 47/179 (26%), Gaps = 43/179 (24%)

Query: 24  PLHVASAYGHVDFVKEIIN-------------VRPDLAHEVNQDGFSPMHIASSIGHTGV 70
            LH+A    ++  V  ++               +          G  P+ +A+      +
Sbjct: 104 ALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI 163

Query: 71  VRELLKVEQKLC--HQQGPEKNTPLHCAAIKGKVHVLSEM---------------LSACP 113
           V+ LL+   +      +    NT LH         V +                 L    
Sbjct: 164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL 223

Query: 114 ECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK 172
           +  E    +  T L LA  + +   +  ++              ++       H A   
Sbjct: 224 KLEEITNRKGLTPLALAASSGKIGVLAYILQ-------------REIHEPECRHAAAHH 269

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 73.7 bits (181), Expect = 3e-15
 Identities = 27/184 (14%), Positives = 54/184 (29%), Gaps = 36/184 (19%)

Query: 22  GNPLHVASAYGHVDFVKEIINVRPDL-AHEVN------QDGFSPMHIASSI---GHTGVV 71
              +  A A  +   ++ ++           +      + G + +  A      G    +
Sbjct: 14  RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTI 73

Query: 72  RELLKVEQKL----------CHQQGPEKNTPLHCAAIKGKVHVLSEMLSA---------- 111
             LL V +K                 +  T LH A  +  + +++ ++            
Sbjct: 74  ALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANG 133

Query: 112 ---CPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHL 168
                          +  L LA   NQ   +  L+      +  +I + +D  GNTVLH 
Sbjct: 134 DFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ--NSWQPADI-SARDSVGNTVLHA 190

Query: 169 ATRK 172
               
Sbjct: 191 LVEV 194

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 65.2 bits (159), Expect = 3e-12
 Identities = 22/132 (16%), Positives = 38/132 (28%), Gaps = 33/132 (25%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLA--HEVNQDGFSPMHIASSIGHTGVVRELLKVEQ-- 79
           PL +A+    +  VK ++      A     +  G + +H    +    V           
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYN 210

Query: 80  ------KLCHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD-- 124
                    H     +        TPL  AA  GK+ VL   +           +Q +  
Sbjct: 211 EILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVL-AYI-----------LQREIH 258

Query: 125 --TALHLAIKNN 134
                H A  ++
Sbjct: 259 EPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 24/163 (14%), Positives = 45/163 (27%), Gaps = 30/163 (18%)

Query: 52  NQDGFSPMHIASSIGHTGVVRELLKVEQKLC-------HQQGPEKNTPLHCAAIKGK--- 101
                  +  A +  +   +  LL   Q+          +      T L  A +      
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 102 ---VHVL---SEMLSACPECIEDVTIQHD----TALHLAIKNNQFEAITVLVN------- 144
              + +L   +    +  + +            TALH+AI+      +T+LV        
Sbjct: 70  NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA 129

Query: 145 -WIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGT 184
                  ++         G   L LA    Q    + LL +  
Sbjct: 130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW 172

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 8/44 (18%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGH 67
           PL +A++ G +  +  I+        +         H A+   H
Sbjct: 236 PLALAASSGKIGVLAYIL--------QREIHEPECRHAAAHHHH 271

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 75.3 bits (186), Expect = 9e-16
 Identities = 20/163 (12%), Positives = 42/163 (25%), Gaps = 40/163 (24%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
             + A     V  V   ++  P           S +HI    GH  ++  LL        
Sbjct: 132 SFYHAVMLNDVSIVSYFLSEIPS--TFDLAILLSCIHITIKNGHVDMMILLLD------- 182

Query: 84  QQGPEKN-------TP-LHCAAIKGKVHVLSEMLSACPECIEDVTIQH----DTALHLAI 131
                 N        P +  A     + +L + L            ++     +A    +
Sbjct: 183 -YMTSTNTNNSLLFIPDIKLAIDNKDIEML-QAL-----------FKYDINIYSANLENV 229

Query: 132 KNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQ 174
             +  E   +++      K  E         +  +    +  +
Sbjct: 230 LLDDAEIAKMIIE-----KHVEY-KSDSYTKDLDIVKNNKLDE 266

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 75.3 bits (186), Expect = 1e-15
 Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 44/179 (24%)

Query: 22  GNPLHVASAYGHVDFVKEIINVRPDLAHEVN---QDGFSPMHIASSIGHTGVVRELLKVE 78
           G  L           +K  ++     + +       G S  + A +  +  +V  LL   
Sbjct: 1   GMDLSRI-NTWKSKQLKSFLS-----SKDTFKADVHGHSASYYAIADNNVRLVCTLLN-- 52

Query: 79  QKLCHQQGPEKN-----TPLHCAAIKGKVHVLSEMLSACPECIE---DVTIQHD---TAL 127
                  G  KN      PLH AA      ++ ++L      +    D +   D   TAL
Sbjct: 53  ------AGALKNLLENEFPLHQAATLEDTKIV-KIL------LFSGLDDSQFDDKGNTAL 99

Query: 128 HLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQG-NTVLHLATRKKQRK--ELLLGHG 183
           + A+ +   + + + V      K   +     + G  T  + A            L   
Sbjct: 100 YYAVDSGNMQTVKLFVK-----KNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI 152

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 70.9 bits (175), Expect = 2e-15
 Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 19/129 (14%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
            L  A+A G V+ V++++    D  + +N+ G  P+ +    G   V   LL        
Sbjct: 15  GLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLL------- 65

Query: 84  QQGPEKN--------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQ 135
             G E N         P+H AA +G +  L  +  A    ++         + LA +   
Sbjct: 66  -HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGH 123

Query: 136 FEAITVLVN 144
            +    L  
Sbjct: 124 RDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 64.0 bits (157), Expect = 7e-13
 Identities = 24/151 (15%), Positives = 45/151 (29%), Gaps = 38/151 (25%)

Query: 49  HEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGK 101
           H +     + +  A++ G    VR+LL        + G + N        P+      G 
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLL--------EAGADPNALNRFGRRPIQVMM-MGS 56

Query: 102 VHVLSEMLSACPECIE---DVTIQHD----TALHLAIKNNQFEAITVLVNWIRGMKREEI 154
             V  E+L      +    +            +H A +    + + VL           +
Sbjct: 57  AQVA-ELL------LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR-----AGARL 104

Query: 155 FNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
            ++ D  G   + LA  +  R     L    
Sbjct: 105 -DVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 69.4 bits (171), Expect = 1e-14
 Identities = 26/130 (20%), Positives = 45/130 (34%), Gaps = 19/130 (14%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
           + L  A+A G V+ V+ ++    +  +  N  G  P+ +    G   V   LL       
Sbjct: 14  DWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMMM-GSARVAELLL------- 64

Query: 83  HQQGPEKN--------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
              G E N         P+H AA +G +  L  +  A    ++         + LA +  
Sbjct: 65  -LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELG 122

Query: 135 QFEAITVLVN 144
             +    L  
Sbjct: 123 HRDVARYLRA 132

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 62.9 bits (154), Expect = 3e-12
 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 7/81 (8%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           P+H A+  G +D +  +      L    +  G  P+ +A  +GH  V R L         
Sbjct: 81  PVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA------A 133

Query: 84  QQGPEKNTPLHCAAIKGKVHV 104
             G   +      A +G   +
Sbjct: 134 AGGTRGSNHARIDAAEGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 59.8 bits (146), Expect = 3e-11
 Identities = 27/141 (19%), Positives = 43/141 (30%), Gaps = 28/141 (19%)

Query: 54  DGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGKVHVLS 106
                +  A++ G    VR LL        + G   N        P+      G   V  
Sbjct: 11  PSADWLATAAARGRVEEVRALL--------EAGANPNAPNSYGRRPIQVMM-MGSARVAE 61

Query: 107 EMLS--ACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNT 164
            +L   A P C +  T      +H A +    + + VL     G +     +++D  G  
Sbjct: 62  LLLLHGAEPNCADPAT--LTRPVHDAAREGFLDTLVVLHR--AGARL----DVRDAWGRL 113

Query: 165 VLHLATRKKQRK--ELLLGHG 183
            + LA     R     L    
Sbjct: 114 PVDLAEELGHRDVARYLRAAA 134

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 6/48 (12%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVV 71
           P+ +A   GH D  + +       A      G +   I ++ G + + 
Sbjct: 114 PVDLAEELGHRDVARYLR------AAAGGTRGSNHARIDAAEGPSDIP 155

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 66.6 bits (164), Expect = 2e-14
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 16/88 (18%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH+A+  GH++ VK ++    D+ +  +++G +P+H+A+  GH  VV+ LL+       
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE------- 56

Query: 84  QQGPEKN-------TPLHCAAIKGKVHV 104
             G + N       TPLH AA  G + V
Sbjct: 57  -AGADVNAKDKNGRTPLHLAARNGHLEV 83

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 55.1 bits (134), Expect = 4e-10
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 16/97 (16%)

Query: 54  DGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGKVHVLS 106
           +G +P+H+A+  GH  VV+ LL+         G + N       TPLH AA  G + V+ 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLE--------AGADVNAKDKNGRTPLHLAARNGHLEVVK 52

Query: 107 EMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLV 143
            +L A  + +        T LHLA +N   E + +L+
Sbjct: 53  LLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 53.1 bits (129), Expect = 2e-09
 Identities = 19/54 (35%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKV 77
          PLH+A+  GH++ VK ++    D+ +  +++G +P+H+A+  GH  VV+ LL+ 
Sbjct: 38 PLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 67.0 bits (165), Expect = 3e-14
 Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 17/112 (15%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH A+  GH + VK++++   D+ +  ++DG +P+H+A+  GH  +V+ LL        
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLA------- 63

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALH 128
            +G + N       TP H A   G   ++  + +   + +   +       H
Sbjct: 64  -KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD-VNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 61.2 bits (150), Expect = 4e-12
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 22/123 (17%)

Query: 52  NQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGKVHV 104
           ++DG +P+H A+  GH   V++LL         +G + N       TPLH AA  G   +
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLS--------KGADVNARSKDGNTPLHLAAKNGHAEI 57

Query: 105 LSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNT 164
           +  +L+   + +   +   +T  HLA KN   E + +L       K  ++ N +    + 
Sbjct: 58  VKLLLAKGAD-VNARSKDGNTPEHLAKKNGHHEIVKLLDA-----KGADV-NARSWGSSH 110

Query: 165 VLH 167
             H
Sbjct: 111 HHH 113

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 68.3 bits (167), Expect = 2e-13
 Identities = 32/181 (17%), Positives = 55/181 (30%), Gaps = 38/181 (20%)

Query: 23  NPLHVASAYGHVDFVKEII--------NVRPDLAHEVNQDGFSPMHIA---SSIGHTGVV 71
             L    + G  D ++ ++         +  D        G + +  A    S G    +
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRL-TDEEFREPSTGKTCLPKALLNLSAGRNDTI 65

Query: 72  RELLKVEQKL----------CHQQGPEKNTPLHCAAIKGKVHVLSEMLS----------- 110
             LL + +K                    T LH A  +   H +  ++            
Sbjct: 66  PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARG 125

Query: 111 --ACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHL 168
               P+         +  L LA   NQ   +  L     G K+ ++   +D +GNTVLH 
Sbjct: 126 RFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE--NGHKQADL-RRQDSRGNTVLHA 182

Query: 169 A 169
            
Sbjct: 183 L 183

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 64.4 bits (157), Expect = 4e-12
 Identities = 31/201 (15%), Positives = 64/201 (31%), Gaps = 42/201 (20%)

Query: 24  PLHVA---SAYGHVDFVKEIINVRPDLA----------HEVNQDGFSPMHIASSIGHTGV 70
            L  A    + G  D +  ++++                +V   G + +HIA        
Sbjct: 49  CLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHY 108

Query: 71  VRELLK----VEQKLCHQQGPEKN---------TPLHCAAIKGKVHVLSEMLSACPECIE 117
           V  L++    V  +   +    K+          PL  AA   + H++   L+       
Sbjct: 109 VELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIV-HYLTENGHKQA 167

Query: 118 DVTIQ---HDTALHLAI--KNNQFEAITV--------LVNWIRGMKREEIFNMKDEQGNT 164
           D+  Q    +T LH  +   +N  E            L+   +      +  + +  G +
Sbjct: 168 DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLS 227

Query: 165 VLHLATR--KKQRKELLLGHG 183
            L +A +  K    + ++   
Sbjct: 228 PLMMAAKTGKIGIFQHIIRRE 248

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 24/160 (15%), Positives = 49/160 (30%), Gaps = 32/160 (20%)

Query: 24  PLHVASAYGHVDFVKEII----NV---------RPDLAHEVNQDGFSPMHIASSIGHTGV 70
            LH+A       +V+ ++    +V         +P         G  P+ +A+      +
Sbjct: 96  ALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHI 155

Query: 71  VRELLKVEQKLCH--QQGPEKNTPLHCAAIKGKVH-------------VLSEMLSACPEC 115
           V  L +   K     +Q    NT LH                      +L +     P+ 
Sbjct: 156 VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT 215

Query: 116 IEDVTIQHD--TALHLAIKNNQFEAITVLVNWIRGMKREE 153
             +  + +D  + L +A K  +      ++   R +    
Sbjct: 216 NLEALLNNDGLSPLMMAAKTGKIGIFQHIIR--REIADAA 253

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 21/89 (23%)

Query: 22  GN-PLHVASAYGH-----VDFVKEI----------INVRPDLAHEVNQDGFSPMHIASSI 65
           GN  LH   A          FV ++          +    +L   +N DG SP+ +A+  
Sbjct: 176 GNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT 235

Query: 66  GHTGVVRELLKVEQKLCHQQGPEKNTPLH 94
           G  G+ + +++ E           +   H
Sbjct: 236 GKIGIFQHIIRREIA-----DAAAHHHHH 259

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 65.1 bits (160), Expect = 3e-13
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 29/132 (21%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
            L  A+  G  D V+ ++    D+ +  ++ G +P+++A++ GH  +V  LLK       
Sbjct: 17  KLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLK------- 68

Query: 84  QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIE---DVTIQHD---TALHLA 130
             G + N       TPLH AA  G + +  E+L      ++   DV  Q     TA  ++
Sbjct: 69  -NGADVNAVDAIGFTPLHLAAFIGHLEIA-EVL------LKHGADVNAQDKFGKTAFDIS 120

Query: 131 IKNNQFEAITVL 142
           I N   +   +L
Sbjct: 121 IGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 52.0 bits (126), Expect = 1e-08
 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 9/103 (8%)

Query: 83  HQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVL 142
           H  G +    L  AA  G+   +  +L A    +        T L+LA  +   E + VL
Sbjct: 8   HHHGSDLGKKLLEAARAGQDDEV-RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVL 66

Query: 143 VNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
           +    G          D  G T LHLA      +  E+LL HG
Sbjct: 67  LK--NGADVNA----VDAIGFTPLHLAAFIGHLEIAEVLLKHG 103

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 45.5 bits (109), Expect = 2e-06
 Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK 76
           PLH+A+  GH++  + ++    D+ +  ++ G +   I+   G+  +   L K
Sbjct: 83  PLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 63.4 bits (155), Expect = 7e-13
 Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 20/122 (16%)

Query: 28  ASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGP 87
            S++ H      ++         +  D    +  A+  G    VR L+          G 
Sbjct: 1   GSSHHHHHHSSGLVPRGSH----MGSDLGKKLLEAARAGQDDEVRILMA--------NGA 48

Query: 88  EKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAIT 140
           +         TPLH AA  G + V+  +L A  + +        TA  ++I N   +   
Sbjct: 49  DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNEDLAE 107

Query: 141 VL 142
           +L
Sbjct: 108 IL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 55.7 bits (135), Expect = 3e-10
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 21  KGN-PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQ 79
                L  A+  G  D V+ ++    D+    +++G +P+H+A+  GH  VV+ LL+   
Sbjct: 23  DLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81

Query: 80  KLCHQQGPEKNTPLHCAAIKGKVHVLS 106
            +   Q     T    +   G   +  
Sbjct: 82  DV-XAQDKFGKTAFDISIDNGNEDLAE 107

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVREL 74
           PLH+A+  GH++ VK ++    D+    ++ G +   I+   G+  +   L
Sbjct: 60  PLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 125 TALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGH 182
             L  A +  Q + + +L+         ++   KD+ G+T LHLA R    +  +LLL  
Sbjct: 26  KKLLEAARAGQDDEVRILMA-----NGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEA 79

Query: 183 G 183
           G
Sbjct: 80  G 80

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 90  NTPLHCAAIKGKVHVLS--EMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIR 147
            T LH A        L   + L      ++  T +  TALH     +  E + +L     
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL----- 224

Query: 148 GMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLL 180
            ++ +    + +E G T L +A R K     ELL 
Sbjct: 225 -LRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 5/100 (5%)

Query: 52  NQDGFSPMHIASSIGHTGVVR--ELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEML 109
           ++   + +H+A        +   + L        +Q  + +T LH   +      L  +L
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 110 SA-CPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRG 148
                  I + + +  T L +A +        +L   + G
Sbjct: 226 RGKASIEIANESGE--TPLDIAKRLKHEHCEELLTQALSG 263

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 37/294 (12%), Positives = 74/294 (25%), Gaps = 89/294 (30%)

Query: 2   KKETAIKAFIFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQD----GFS 57
           +    ++       L  LR    + +    G +   K        +A +V          
Sbjct: 135 QPYLKLRQ-----ALLELRPAKNVLI---DGVLGSGKTW------VALDVCLSYKVQCKM 180

Query: 58  PMHIA-SSIGHTGVVRELLKVEQKLCHQQGPE--------KNTPLHCAAIKGKVHVL--S 106
              I   ++ +      +L++ QKL +Q  P          N  L   +I+ ++  L  S
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 107 EMLSAC---------PECIEDVTIQ-------HDTALHLAIKNNQFEAITVLVNWIRGMK 150
           +    C          +      +            +   +       I+ L +    + 
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS-LDHHSMTLT 299

Query: 151 REE---IF----NMKDEQGNTVLHLATRKKQRKELLLGHGTYSSGRLELIALHQQRQLDS 203
            +E   +     + + +       L           L           +IA    R   +
Sbjct: 300 PDEVKSLLLKYLDCRPQD------LPREVLTTNPRRLS----------IIAE-SIRDGLA 342

Query: 204 RHDFVEYFKFKKGRD---------SPGETRSAL--LVVAALVATTSFQFGVNPP 246
             D  ++    K             P E R     L V        F    + P
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--------FPPSAHIP 388

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQ 79
            LH A+ Y   D +K ++  R  +   VN+ G + + IA    H     ELL+  Q
Sbjct: 229 ALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECE-ELLEQAQ 282

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	328
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.98
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.98
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.98
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.98
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.98
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.98
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.97
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.96
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.91
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.85
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.84
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.81
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.79

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.4e-35  Score=238.75  Aligned_cols=154  Identities=29%  Similarity=0.437  Sum_probs=146.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcH
Q 046832           23 NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKV  102 (328)
Q Consensus        23 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~  102 (328)
                      ++|+.||+.|+.++|+.|++.|.++ +.+|.+|+||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCH
Confidence            4799999999999999999999998 899999999999999999999999999999998 99999999999999999999


Q ss_pred             HHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhh
Q 046832          103 HVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLL  180 (328)
Q Consensus       103 ~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll  180 (328)
                      +++++|++.+++ ++.+|.+|+||||+|+++|+.+++++|++      .|++++.+|.+|+||||+|+..++.+  ++|+
T Consensus        84 ~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~------~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  156 (169)
T 4gpm_A           84 EVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLIS------KGADVNTSDSDGRTPLDLAREHGNEEVVKLLE  156 (169)
T ss_dssp             HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999998 89999999999999999999999999998      68889999999999999999999999  9999


Q ss_pred             cCCCC
Q 046832          181 GHGTY  185 (328)
Q Consensus       181 ~~ga~  185 (328)
                      ++|+.
T Consensus       157 ~~GA~  161 (169)
T 4gpm_A          157 KQGGW  161 (169)
T ss_dssp             TC---
T ss_pred             HCCCC
Confidence            99994

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=8.6e-34  Score=235.18  Aligned_cols=167  Identities=18%  Similarity=0.222  Sum_probs=157.0

Q ss_pred             HHHHHHHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCC
Q 046832            8 KAFIFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGP   87 (328)
Q Consensus         8 ~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~   87 (328)
                      +....+++.+|..|.||||+|+..|+.++++.|++.+.++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|.
T Consensus        22 ~~~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~   99 (192)
T 2rfm_A           22 QNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDF   99 (192)
T ss_dssp             HTHHHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCT
T ss_pred             hhhHHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC
Confidence            3445678999999999999999999999999999999887 888999999999999999999999999999998 89999


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhh
Q 046832           88 EKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLH  167 (328)
Q Consensus        88 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh  167 (328)
                      .|.||||+|+..|+.+++++|++.+++ ++..|..|+||||+|++.|+.+++++|++      .|++++.+|.+|+||||
T Consensus       100 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~t~l~  172 (192)
T 2rfm_A          100 SGKTPLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLE------LGADISARDLTGLTAEA  172 (192)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHH------TTCCTTCBCTTSCBHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCCHHH
Confidence            999999999999999999999999988 88999999999999999999999999998      67889999999999999


Q ss_pred             HHhhccchh--HHhhcCC
Q 046832          168 LATRKKQRK--ELLLGHG  183 (328)
Q Consensus       168 ~A~~~~~~~--~~Ll~~g  183 (328)
                      +|+..++.+  ++|+++|
T Consensus       173 ~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          173 SARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHhcc
Confidence            999999998  8888765

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.4e-33  Score=241.80  Aligned_cols=164  Identities=24%  Similarity=0.312  Sum_probs=154.2

Q ss_pred             hhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHH
Q 046832           15 KLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLH   94 (328)
Q Consensus        15 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh   94 (328)
                      +.+|..|.||||+|+..|+.++++.|++.+.++ +..|..|+||||+|+..|+.+++++|+++++...+.++.+|.||||
T Consensus        51 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~  129 (253)
T 1yyh_A           51 NQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI  129 (253)
T ss_dssp             -CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHH
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHH
Confidence            456899999999999999999999999999988 8889999999999999999999999999998444889999999999


Q ss_pred             HHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccc
Q 046832           95 CAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQ  174 (328)
Q Consensus        95 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~  174 (328)
                      +|+..|+.+++++|++.+++ ++..|..|+||||+|+.+|+.+++++|++      .|++++.+|.+|+||||+|+..++
T Consensus       130 ~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~tpL~~A~~~~~  202 (253)
T 1yyh_A          130 LAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLK------NGANKDMQNNREETPLFLAAREGS  202 (253)
T ss_dssp             HHHHHTCSSHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHcChHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCCcCCCCCCHHHHHHHCCC
Confidence            99999999999999999988 88999999999999999999999999998      678899999999999999999999


Q ss_pred             hh--HHhhcCCCCC
Q 046832          175 RK--ELLLGHGTYS  186 (328)
Q Consensus       175 ~~--~~Ll~~ga~~  186 (328)
                      .+  ++|+++|+..
T Consensus       203 ~~~v~~Ll~~ga~~  216 (253)
T 1yyh_A          203 YETAKVLLDHFANR  216 (253)
T ss_dssp             HHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHcCCCc
Confidence            99  9999999844

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.8e-33  Score=244.36  Aligned_cols=165  Identities=19%  Similarity=0.251  Sum_probs=136.7

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccc------------
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL------------   81 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~------------   81 (328)
                      ++.+|..|.||||+|+..|+.+++++|+++|.++ +.+|..|+||||+|+..|+.+++++|++++++.            
T Consensus        38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  116 (282)
T 1oy3_D           38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS  116 (282)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcc
Confidence            5677888888888888888888888888888887 777888888888888888888888888876541            


Q ss_pred             ----------------------------------cccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccC-CCCCH
Q 046832           82 ----------------------------------CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTI-QHDTA  126 (328)
Q Consensus        82 ----------------------------------~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-~g~t~  126 (328)
                                                        .+.+|..|.||||+|+..|+.+++++|++.+++ ++..+. .|+||
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tp  195 (282)
T 1oy3_D          117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTP  195 (282)
T ss_dssp             ---------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCH
T ss_pred             cccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCH
Confidence                                              256677888888888888888888888888887 666664 48889


Q ss_pred             HHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcCCCCC
Q 046832          127 LHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       127 Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~  186 (328)
                      ||+|+++|+.+++++|++      .|++++.+|.+|+||||+|+..++.+  ++|+++|+..
T Consensus       196 L~~A~~~~~~~~v~~Ll~------~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  251 (282)
T 1oy3_D          196 LHLAVEAQAASVLELLLK------AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE  251 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCC
T ss_pred             HHHHHHcCCHHHHHHHHH------cCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCc
Confidence            999888888888888887      57778888888999999998888888  8888888844

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=5.2e-33  Score=236.81  Aligned_cols=165  Identities=25%  Similarity=0.400  Sum_probs=155.2

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCH
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTP   92 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp   92 (328)
                      .++.+|..|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||
T Consensus        32 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~  109 (231)
T 3aji_A           32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTP  109 (231)
T ss_dssp             GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred             hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCH
Confidence            35667899999999999999999999999999887 888999999999999999999999999999998 8899999999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhc
Q 046832           93 LHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK  172 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~  172 (328)
                      ||+|+..|+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|++      .|.+++.+|.+|+||||+|+..
T Consensus       110 L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~~  182 (231)
T 3aji_A          110 LHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLF------YKASTNIQDTEGNTPLHLACDE  182 (231)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH------TTCCSCCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHh------cCCCccccCCCCCCHHHHHHHC
Confidence            9999999999999999999988 78889999999999999999999999998      6788899999999999999999


Q ss_pred             cchh--HHhhcCCCCC
Q 046832          173 KQRK--ELLLGHGTYS  186 (328)
Q Consensus       173 ~~~~--~~Ll~~ga~~  186 (328)
                      ++.+  ++|+++|++.
T Consensus       183 ~~~~~v~~Ll~~ga~~  198 (231)
T 3aji_A          183 ERVEEAKFLVTQGASI  198 (231)
T ss_dssp             TCHHHHHHHHHTTCCS
T ss_pred             CCHHHHHHHHHCCCCC
Confidence            9998  9999999844

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.8e-33  Score=242.26  Aligned_cols=167  Identities=21%  Similarity=0.275  Sum_probs=123.9

Q ss_pred             HHhhccCCCChHHHHHHHcC-------------CHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCc
Q 046832           13 LVKLKALRKGNPLHVASAYG-------------HVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQ   79 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g-------------~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~   79 (328)
                      +++.+|.+|.||||+|+..|             +.++++.|++.++++.+..|.+|+||||+|+..|+.+++++|+++|+
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~   81 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA   81 (253)
T ss_dssp             --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            57889999999999999987             89999999999999977789999999999999999999999999999


Q ss_pred             cccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCcccccccccc
Q 046832           80 KLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKD  159 (328)
Q Consensus        80 ~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d  159 (328)
                      ++ +.+|..|.||||+|+..|+.+++++|++.++..++..+..|+||||+|+..|+.+++++|++      .|.+++.+|
T Consensus        82 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~d  154 (253)
T 1yyh_A           82 DA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN------SHADVNAVD  154 (253)
T ss_dssp             CT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHH------TTCCTTCBC
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHH------cCCCCCCcC
Confidence            98 89999999999999999999999999999986688999999999999999999999999998      678899999


Q ss_pred             CCCCchhhHHhhccchh--HHhhcCCCCC
Q 046832          160 EQGNTVLHLATRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       160 ~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~  186 (328)
                      .+|+||||+|+..++.+  ++|+++|+..
T Consensus       155 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  183 (253)
T 1yyh_A          155 DLGKSALHWAAAVNNVDAAVVLLKNGANK  183 (253)
T ss_dssp             TTSCBHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999999  9999999844

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.3e-33  Score=241.62  Aligned_cols=151  Identities=23%  Similarity=0.340  Sum_probs=75.7

Q ss_pred             hhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHH
Q 046832           15 KLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLH   94 (328)
Q Consensus        15 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh   94 (328)
                      +.+|.+|+||||+|+..|+.+++++|++.++++ +..+.+|.||+|+|+..++.+++++|++.|+++ +.+|..|.||||
T Consensus        80 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~  157 (269)
T 4b93_B           80 NVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLI  157 (269)
T ss_dssp             TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHH
T ss_pred             CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHH
Confidence            344445555555555555555555555554444 444445555555555555555555555555444 444555555555


Q ss_pred             HHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccc
Q 046832           95 CAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQ  174 (328)
Q Consensus        95 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~  174 (328)
                      +|+..|+.+++++|++.|++ ++..+..|+||||+|+.+|+.+++++|++      .|+++|.+|.+|+||||+|+++++
T Consensus       158 ~A~~~g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~------~Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          158 YACSGGHHELVALLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLL------HGASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHHHTTCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH------TTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHHCCCHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCCHHHHHHhCCc
Confidence            55555555555555555444 44444555555555555555555555554      344445555555555555544443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=3.8e-32  Score=226.48  Aligned_cols=162  Identities=21%  Similarity=0.212  Sum_probs=86.5

Q ss_pred             hhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHH
Q 046832           15 KLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLH   94 (328)
Q Consensus        15 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh   94 (328)
                      +.+|.+|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+..|+.+++++|++.+....+.+|..|.||||
T Consensus        33 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~  111 (201)
T 3hra_A           33 DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALI  111 (201)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHH
Confidence            344455555555555555555555555555554 4455555555555555555555555553332222555555555555


Q ss_pred             HHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCC-----hhhHHHHHHhhhcCccccccccccCCCCchhhHH
Q 046832           95 CAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQ-----FEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLA  169 (328)
Q Consensus        95 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~-----~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A  169 (328)
                      +|+..|+.+++++|++.++..++..|..|+||||+|+..++     .+++++|++      .|++++.+|.+|+||||+|
T Consensus       112 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~------~ga~~~~~~~~g~t~l~~A  185 (201)
T 3hra_A          112 PAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME------NGADQSIKDNSGRTAMDYA  185 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHH------TTCCTTCCCTTSCCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHH------CCCCCCccCCCCCCHHHHH
Confidence            55555555555555555533355555555555555555554     555555554      3445555555555555555


Q ss_pred             hhccchh--HHhhcCC
Q 046832          170 TRKKQRK--ELLLGHG  183 (328)
Q Consensus       170 ~~~~~~~--~~Ll~~g  183 (328)
                      +..++.+  ++|+++|
T Consensus       186 ~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          186 NQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHTCHHHHHHHHTCC
T ss_pred             HHcCCHhHHHHHHhcC
Confidence            5555555  5555443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=1.4e-32  Score=223.70  Aligned_cols=156  Identities=24%  Similarity=0.336  Sum_probs=148.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcC
Q 046832           21 KGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKG  100 (328)
Q Consensus        21 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g  100 (328)
                      +.||||.|+..|+.++++.|++.+++..+..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence            5789999999999999999999999877999999999999999999999999999999998 899999999999999999


Q ss_pred             cHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HH
Q 046832          101 KVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--EL  178 (328)
Q Consensus       101 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~  178 (328)
                      +.+++++|++.+.+ ++..|..|+||||+|+++|+.+++++|++      .|++++.+|.+|+||||+|+..++.+  ++
T Consensus        81 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~  153 (172)
T 3v30_A           81 YTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLA------RGADLTTEADSGYTPMDLAVALGYRKVQQV  153 (172)
T ss_dssp             CHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             CHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCccccCCCCCCHHHHHHHhCcHHHHHH
Confidence            99999999999988 88899999999999999999999999998      67889999999999999999999998  99


Q ss_pred             hhcCCC
Q 046832          179 LLGHGT  184 (328)
Q Consensus       179 Ll~~ga  184 (328)
                      |+++|+
T Consensus       154 L~~~~~  159 (172)
T 3v30_A          154 IENHIL  159 (172)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998887

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=2.6e-32  Score=221.06  Aligned_cols=156  Identities=19%  Similarity=0.309  Sum_probs=148.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHc
Q 046832           20 RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIK   99 (328)
Q Consensus        20 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~   99 (328)
                      +|.||||.|+..|+.++++.|++.+.++ +..|.+|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHc
Confidence            6899999999999999999999999886 889999999999999999999999999999998 88999999999999999


Q ss_pred             CcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--H
Q 046832          100 GKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--E  177 (328)
Q Consensus       100 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~  177 (328)
                      |+.+++++|++.+++ ++..|..|+||||+|+..|+.+++++|++      .|++++.+|.+|+||||+|+..++.+  +
T Consensus        80 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  152 (167)
T 3v31_A           80 GYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLE------SGADPTIETDSGYNSMDLAVALGYRSVQQ  152 (167)
T ss_dssp             TCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            999999999999988 88899999999999999999999999998      67888999999999999999999998  8


Q ss_pred             HhhcCCC
Q 046832          178 LLLGHGT  184 (328)
Q Consensus       178 ~Ll~~ga  184 (328)
                      +|+++++
T Consensus       153 ~L~~~~~  159 (167)
T 3v31_A          153 VIESHLL  159 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888775

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=5.8e-32  Score=229.04  Aligned_cols=164  Identities=24%  Similarity=0.312  Sum_probs=153.1

Q ss_pred             hhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHH
Q 046832           15 KLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLH   94 (328)
Q Consensus        15 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh   94 (328)
                      +..|.+|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+..|+.+++++|+++++...+.++..|.||||
T Consensus        19 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~   97 (223)
T 2f8y_A           19 NQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI   97 (223)
T ss_dssp             CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHH
T ss_pred             cccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHH
Confidence            345889999999999999999999999999887 8889999999999999999999999999998555889999999999


Q ss_pred             HHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccc
Q 046832           95 CAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQ  174 (328)
Q Consensus        95 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~  174 (328)
                      +|+..|+.+++++|++.+++ ++..|..|+||||+|+..|+.+++++|++      .|++++.+|.+|+||||+|+..++
T Consensus        98 ~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~~~~  170 (223)
T 2f8y_A           98 LAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLK------NGANKDMQNNREETPLFLAAREGS  170 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             HHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHH------cCCCCCCcCCCCcCHHHHHHHcCC
Confidence            99999999999999999888 88899999999999999999999999998      578899999999999999999999


Q ss_pred             hh--HHhhcCCCCC
Q 046832          175 RK--ELLLGHGTYS  186 (328)
Q Consensus       175 ~~--~~Ll~~ga~~  186 (328)
                      .+  ++|+++|+..
T Consensus       171 ~~~v~~Ll~~ga~~  184 (223)
T 2f8y_A          171 YETAKVLLDHFANR  184 (223)
T ss_dssp             HHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHcCCCC
Confidence            98  9999999854

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.9e-32  Score=232.71  Aligned_cols=165  Identities=22%  Similarity=0.247  Sum_probs=149.2

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcC--CCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcC--ccccccCCCCC
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVR--PDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVE--QKLCHQQGPEK   89 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~--~~~~~~~~~~g   89 (328)
                      .+.+|..|.||||+|+..|+.+++++|++.+  +++....|..|+||||+|+..|+.+++++|+++|  +++ +.+|..|
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g  107 (228)
T 2dzn_A           29 LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQG  107 (228)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCTTC
T ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCcCC
Confidence            3457899999999999999999999999998  6663337889999999999999999999999998  776 8889999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccc-cccccccCCCCchhhH
Q 046832           90 NTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKRE-EIFNMKDEQGNTVLHL  168 (328)
Q Consensus        90 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~~~d~~G~T~Lh~  168 (328)
                      .||||+|+..|+.+++++|++.+.+ ++..|..|+||||+|++.|+.+++++|++      .+ .+++.+|.+|+||||+
T Consensus       108 ~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~d~~g~t~L~~  180 (228)
T 2dzn_A          108 VTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCG------LGKSAVNWQDKQGWTPLFH  180 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHT------TTCCCSCCCCTTSCCHHHH
T ss_pred             CCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHh------cCcccccCcCCCCCCHHHH
Confidence            9999999999999999999999887 88899999999999999999999999998      45 7889999999999999


Q ss_pred             Hhhccchh--HHhh-cCCCCC
Q 046832          169 ATRKKQRK--ELLL-GHGTYS  186 (328)
Q Consensus       169 A~~~~~~~--~~Ll-~~ga~~  186 (328)
                      |+..++.+  ++|+ ++|++.
T Consensus       181 A~~~~~~~~v~~Ll~~~ga~~  201 (228)
T 2dzn_A          181 ALAEGHGDAAVLLVEKYGAEY  201 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHCCCS
T ss_pred             HHHcCCHHHHHHHHHhcCCCC
Confidence            99999998  8888 889843

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=1.9e-32  Score=220.50  Aligned_cols=156  Identities=20%  Similarity=0.282  Sum_probs=145.5

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHH
Q 046832           19 LRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAI   98 (328)
Q Consensus        19 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~   98 (328)
                      ....||||.|+..|+.++++.|++.+.++ +..|..|+||||+|+. |+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   79 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAAR   79 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence            46789999999999999999999999888 8889999999999999 9999999999999998 8899999999999999


Q ss_pred             cCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccc-cccccCCCCchhhHHhhccchh-
Q 046832           99 KGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEI-FNMKDEQGNTVLHLATRKKQRK-  176 (328)
Q Consensus        99 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~d~~G~T~Lh~A~~~~~~~-  176 (328)
                      .|+.+++++|++.+.+ ++..|..|+||||+|+++|+.+++++|++.      +.+ ++.+|.+|+||||+|+..++.+ 
T Consensus        80 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~~~~~~~g~t~l~~A~~~~~~~~  152 (162)
T 1ihb_A           80 AGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKH------TASNVGHRNHKGDTACDLARLYGRNEV  152 (162)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH------SCCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc------cCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence            9999999999999987 888999999999999999999999999984      444 6899999999999999999999 


Q ss_pred             -HHhhcCCC
Q 046832          177 -ELLLGHGT  184 (328)
Q Consensus       177 -~~Ll~~ga  184 (328)
                       ++|+++|+
T Consensus       153 ~~~Ll~~GA  161 (162)
T 1ihb_A          153 VSLMQANGA  161 (162)
T ss_dssp             HHHHHHTC-
T ss_pred             HHHHHHhCC
Confidence             99999997

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=2.3e-32  Score=220.89  Aligned_cols=160  Identities=23%  Similarity=0.302  Sum_probs=146.2

Q ss_pred             hccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHH
Q 046832           16 LKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHC   95 (328)
Q Consensus        16 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~   95 (328)
                      ..|.+|.||||.|++.|+.++++.|++.++...+..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+
T Consensus         3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~   81 (165)
T 3twr_A            3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHN   81 (165)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHH
Confidence            357889999999999999999999999777666888899999999999999999999999999998 8999999999999


Q ss_pred             HHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccch
Q 046832           96 AAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQR  175 (328)
Q Consensus        96 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~  175 (328)
                      |+..|+.+++++|++.+.+ ++..|..|+||||+|+++|+.+++++|++      .|++++.+|.+|+||||+|.. ++.
T Consensus        82 A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~t~l~~a~~-~~~  153 (165)
T 3twr_A           82 ACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQ------HGADPTKKNRDGNTPLDLVKD-GDT  153 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCTGGGSCT-TCH
T ss_pred             HHHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCcccCCCCCChhHhHhc-CCh
Confidence            9999999999999999988 88899999999999999999999999998      678899999999999999877 666


Q ss_pred             h--HHhhcCCC
Q 046832          176 K--ELLLGHGT  184 (328)
Q Consensus       176 ~--~~Ll~~ga  184 (328)
                      +  ++|+++|+
T Consensus       154 ~i~~~L~~~gA  164 (165)
T 3twr_A          154 DIQDLLRGDAA  164 (165)
T ss_dssp             HHHHHHHTC--
T ss_pred             HHHHHHhhccc
Confidence            7  99998886

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.5e-32  Score=234.26  Aligned_cols=166  Identities=19%  Similarity=0.267  Sum_probs=75.6

Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHHhcCCCcc----cccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCC-----
Q 046832           17 KALRKGNPLHVASAYGHVDFVKEIINVRPDLA----HEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGP-----   87 (328)
Q Consensus        17 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~----~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~-----   87 (328)
                      +|..|.||||+|+..|+.+++++|++.+++..    +..|.+|+||||+|+..|+.+++++|+++|+++ +.++.     
T Consensus        33 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~  111 (232)
T 2rfa_A           33 RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV-SARATGSVFH  111 (232)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGS
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCC-CcccCCccee
Confidence            44444555555555555555555554444321    223334455555555555555555555544444 33222     


Q ss_pred             --------CCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhH----HHHHHhhhcCcccccc
Q 046832           88 --------EKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAI----TVLVNWIRGMKREEIF  155 (328)
Q Consensus        88 --------~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~----~~Ll~~~~~~~~~~~~  155 (328)
                              +|.||||+|+..|+.+++++|++++++ ++..|..|+||||+|+.+++.+++    ++|++.+.+.......
T Consensus       112 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~  190 (232)
T 2rfa_A          112 YRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLE  190 (232)
T ss_dssp             CCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGG
T ss_pred             ecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhh
Confidence                    345555555555555555555544444 444444455555555555544444    4444422221111111


Q ss_pred             ccccCCCCchhhHHhhccchh--HHhhcCCC
Q 046832          156 NMKDEQGNTVLHLATRKKQRK--ELLLGHGT  184 (328)
Q Consensus       156 ~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga  184 (328)
                      +.+|.+|+||||+|+..|+.+  ++|+++|+
T Consensus       191 ~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~  221 (232)
T 2rfa_A          191 LVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK  221 (232)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence            344445555555555544444  44444443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=9.9e-33  Score=241.70  Aligned_cols=166  Identities=22%  Similarity=0.277  Sum_probs=152.1

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCc--ccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCC
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDL--AHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNT   91 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~t   91 (328)
                      ++.+|.+|+||||+|++.|+.+++++|++.+.+.  .+.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t   80 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHT   80 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCC
Confidence            5788999999999999999999999999988772  4788999999999999999999999999999998 899999999


Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCc----------------------------------------------ccccccCCCCC
Q 046832           92 PLHCAAIKGKVHVLSEMLSACPE----------------------------------------------CIEDVTIQHDT  125 (328)
Q Consensus        92 pLh~Aa~~g~~~~v~~Ll~~~~~----------------------------------------------~~~~~~~~g~t  125 (328)
                      |||+|+..|+.+++++|++.++.                                              .++..+..|+|
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            99999999999999999997754                                              14567789999


Q ss_pred             HHHHHHHcCChhhHHHHHHhhhcCccccccccccCC-CCchhhHHhhccchh--HHhhcCCCCC
Q 046832          126 ALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQ-GNTVLHLATRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       126 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~-G~T~Lh~A~~~~~~~--~~Ll~~ga~~  186 (328)
                      |||+|+..|+.+++++|++      .|++++.+|.. |+||||+|+..++.+  ++|+++|+..
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~  218 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRD------AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP  218 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHH------HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999998      67788888855 999999999999999  9999999844

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=6.6e-32  Score=219.31  Aligned_cols=158  Identities=24%  Similarity=0.371  Sum_probs=147.2

Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHH
Q 046832           17 KALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCA   96 (328)
Q Consensus        17 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A   96 (328)
                      ....+.|+||.|++.|+.+++++|++.+.++ +.+|.+|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   87 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLA   87 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHH
Confidence            4556789999999999999999999999988 888999999999999999999999999999998 88999999999999


Q ss_pred             HHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh
Q 046832           97 AIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK  176 (328)
Q Consensus        97 a~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~  176 (328)
                      +..|+.+++++|++.+++ ++..|..|+||||+|++.|+.+++++|++      .|++++.+|.+|+||||+|+..++.+
T Consensus        88 ~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~l~~A~~~~~~~  160 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLK------NGADVNAQDKFGKTAFDISIDNGNED  160 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCCcCCCCCCHHHHHHHhCCHH
Confidence            999999999999999988 88899999999999999999999999998      67889999999999999999999988


Q ss_pred             --HHhhcCC
Q 046832          177 --ELLLGHG  183 (328)
Q Consensus       177 --~~Ll~~g  183 (328)
                        ++|++.|
T Consensus       161 ~~~~L~~~G  169 (169)
T 2y1l_E          161 LAEILQKLN  169 (169)
T ss_dssp             HHHHHHTC-
T ss_pred             HHHHHHHcC
Confidence              8888776

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.98  E-value=3.8e-32  Score=232.51  Aligned_cols=166  Identities=19%  Similarity=0.222  Sum_probs=148.0

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccc-----cccCCC
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL-----CHQQGP   87 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~-----~~~~~~   87 (328)
                      .++.+|..|.||||+|+..|+.+++++|++.|.++ +.+|..|+||||+|+..|+.+++++|++.+++.     .+..+.
T Consensus        37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  115 (236)
T 1ikn_D           37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY  115 (236)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCT
T ss_pred             HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCC
Confidence            46788899999999999999999999999999887 788899999999999999999999999988642     367888


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHhCCcccccccC-CCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchh
Q 046832           88 EKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTI-QHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVL  166 (328)
Q Consensus        88 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~L  166 (328)
                      .|.||||+|+..|+.+++++|++.+++ ++..+. .|+||||+|+..|+.+++++|++      .|++++.+|.+|+|||
T Consensus       116 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~tpl  188 (236)
T 1ikn_D          116 NGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLK------CGADVNRVTYQGYSPY  188 (236)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHT------TTCCSCCCCTTCCCGG
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCcccCCCCCHH
Confidence            899999999999999999999999988 777776 89999999999999999999997      6788899999999999


Q ss_pred             hHHhhccchh--HHhhcCCCCC
Q 046832          167 HLATRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       167 h~A~~~~~~~--~~Ll~~ga~~  186 (328)
                      |+|+..++.+  ++|+++|+..
T Consensus       189 ~~A~~~~~~~~~~~Ll~~ga~~  210 (236)
T 1ikn_D          189 QLTWGRPSTRIQQQLGQLTLEN  210 (236)
T ss_dssp             GGCTTSSCHHHHHHHHTTSCGG
T ss_pred             HHHHccCchHHHHHHHHcchhh
Confidence            9999999888  9999999843

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.98  E-value=1.9e-31  Score=225.91  Aligned_cols=167  Identities=18%  Similarity=0.234  Sum_probs=157.1

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCH
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTP   92 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp   92 (328)
                      .++.+|..|.||||+|+..|+.+++++|++.++...+..|.+|.||||+|+..|+.+++++|+++|+++ +.+|..|.||
T Consensus        50 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~  128 (223)
T 2f8y_A           50 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSA  128 (223)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBH
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcH
Confidence            356778999999999999999999999999998666889999999999999999999999999999998 8899999999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhc
Q 046832           93 LHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK  172 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~  172 (328)
                      ||+|+..|+.+++++|++.+++ ++..|..|+||||+|+++|+.+++++|++      .|++++.+|.+|+||||+|+..
T Consensus       129 L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~t~l~~A~~~  201 (223)
T 2f8y_A          129 LHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLD------HFANRDITDHMDRLPRDIAQER  201 (223)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCcCHHHHHHHcCCHHHHHHHHH------cCCCCccccccCCCHHHHHHHh
Confidence            9999999999999999999887 88899999999999999999999999998      6778899999999999999999


Q ss_pred             cchh--HHhhcCCCCCC
Q 046832          173 KQRK--ELLLGHGTYSS  187 (328)
Q Consensus       173 ~~~~--~~Ll~~ga~~~  187 (328)
                      ++.+  ++|+++|+...
T Consensus       202 ~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          202 MHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             TCHHHHHHHHHTTCSSC
T ss_pred             cchHHHHHHHHcCCCcc
Confidence            9999  99999998654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.98  E-value=1.2e-31  Score=229.63  Aligned_cols=162  Identities=19%  Similarity=0.264  Sum_probs=108.2

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCc----cccccCCCCC
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQ----KLCHQQGPEK   89 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~----~~~~~~~~~g   89 (328)
                      ++.+|..|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+..|+.+++++|++.++    ++ +.+|..|
T Consensus        39 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g  116 (241)
T 1k1a_A           39 LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDG  116 (241)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTS
T ss_pred             CCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCC
Confidence            3455666666666666666666666666666665 5566666666666666666666666666665    33 5566666


Q ss_pred             CCHHHHHHHcCcHHHHHHHHHhCCccccccc-CCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhH
Q 046832           90 NTPLHCAAIKGKVHVLSEMLSACPECIEDVT-IQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHL  168 (328)
Q Consensus        90 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~  168 (328)
                      .||||+|+..|+.+++++|++.+++ ++..+ ..|+||||+|+++|+.+++++|++      .|++++.+|.+|+||||+
T Consensus       117 ~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~  189 (241)
T 1k1a_A          117 LTALHVAVNTECQETVQLLLERGAD-IDAVDIKSGRSPLIHAVENNSLSMVQLLLQ------HGANVNAQMYSGSSALHS  189 (241)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCBCTTSCBHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCC-cccccccCCCcHHHHHHHcCCHHHHHHHHH------cCCCCCCcCCCCCCHHHH
Confidence            6777777777777777777766665 44444 566677777777777777777766      456666677777777777


Q ss_pred             Hhhccchh--HHhhcCCC
Q 046832          169 ATRKKQRK--ELLLGHGT  184 (328)
Q Consensus       169 A~~~~~~~--~~Ll~~ga  184 (328)
                      |+..++.+  ++|+++|+
T Consensus       190 A~~~~~~~~v~~Ll~~ga  207 (241)
T 1k1a_A          190 ASGRGLLPLVRTLVRSGA  207 (241)
T ss_dssp             HHHHTCHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHhcCC
Confidence            77776666  66777766

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.98  E-value=1.1e-31  Score=229.43  Aligned_cols=165  Identities=24%  Similarity=0.314  Sum_probs=145.4

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHH
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPL   93 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL   93 (328)
                      ++.+|.+|.||||+|+..|+.+++++|++.+.++ +..|.+|+||||+|+..|+.+++++|+++|+++ +.++..|.|||
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L   81 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCL   81 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHH
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHH
Confidence            4678889999999999999999999999998887 778888999999999999999999999999887 78888999999


Q ss_pred             HHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhcc
Q 046832           94 HCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKK  173 (328)
Q Consensus        94 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~  173 (328)
                      |+|+..|+.+++++|++.++..++..+..|+||||+|+..++.+++++|++      .|.+++.+|.+|+||||+|+..+
T Consensus        82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~------~g~~~~~~~~~g~t~L~~A~~~~  155 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS------KGSDINIRDNEENICLHWAAFSG  155 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCccCCCCCCHHHHHHHCC
Confidence            999999999999999998866688888889999999999999999999988      57778888999999999999988


Q ss_pred             chh--HHhhcCCCCC
Q 046832          174 QRK--ELLLGHGTYS  186 (328)
Q Consensus       174 ~~~--~~Ll~~ga~~  186 (328)
                      +.+  ++|+++|+..
T Consensus       156 ~~~~~~~Ll~~g~~~  170 (237)
T 3b7b_A          156 CVDIAEILLAAKCDL  170 (237)
T ss_dssp             CHHHHHHHHTTTCCT
T ss_pred             CHHHHHHHHHcCCCC
Confidence            888  8888888743

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.98  E-value=1.7e-31  Score=218.89  Aligned_cols=161  Identities=20%  Similarity=0.238  Sum_probs=149.0

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHH
Q 046832           19 LRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAI   98 (328)
Q Consensus        19 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~   98 (328)
                      .++.++||.|+..|+.++++.|++.++...+..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence            568899999999999999999999977766899999999999999999999999999999998 8899999999999999


Q ss_pred             cCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--
Q 046832           99 KGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--  176 (328)
Q Consensus        99 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--  176 (328)
                      .|+.+++++|++.+++ ++..|..|+||||+|+..|+.+++++|++      .|++++.+|.+|+||||+|+..++.+  
T Consensus        82 ~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~tpl~~A~~~~~~~~~  154 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVA------NGALVSICNKYGEMPVDKAKAPLRELLR  154 (179)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCSSBCCTTSCCGGGGSCHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCcchhccCCCCcHHHHHHHHHHHHH
Confidence            9999999999999988 88999999999999999999999999998      67889999999999999999998888  


Q ss_pred             HHhhcCCCCCC
Q 046832          177 ELLLGHGTYSS  187 (328)
Q Consensus       177 ~~Ll~~ga~~~  187 (328)
                      ++|+++|+...
T Consensus       155 ~~L~~~g~~~~  165 (179)
T 3f6q_A          155 ERAEKMGQNLN  165 (179)
T ss_dssp             HHHHHTTCCCS
T ss_pred             HHHHHhhcCcc
Confidence            99999998553

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=2.3e-31  Score=226.80  Aligned_cols=159  Identities=21%  Similarity=0.277  Sum_probs=145.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhc-CCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCcccc----ccCCCCCCCHHH
Q 046832           20 RKGNPLHVASAYGHVDFVKEIINV-RPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC----HQQGPEKNTPLH   94 (328)
Q Consensus        20 ~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~----~~~~~~g~tpLh   94 (328)
                      .|+||||.|++.|+.++++.|++. +.++ +.+|.+|+||||+|+..|+.+++++|+++++++.    +.+|.+|.||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            589999999999999999999998 6665 8899999999999999999999999999998763    456779999999


Q ss_pred             HHHHcCcHHHHHHHHHhCCcccccccC-------------CCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCC
Q 046832           95 CAAIKGKVHVLSEMLSACPECIEDVTI-------------QHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQ  161 (328)
Q Consensus        95 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-------------~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~  161 (328)
                      +|+..|+.+++++|++.+++ ++..+.             .|+||||+|+++|+.+++++|++      .|+++|.+|.+
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~d~~  153 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARGAS-VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE------HGADIRAQDSL  153 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTT
T ss_pred             HHHHcCCHHHHHHHHhCCCC-CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCC
Confidence            99999999999999999887 555544             79999999999999999999998      68889999999


Q ss_pred             CCchhhHHhhccchh------HHhhcCCCCC
Q 046832          162 GNTVLHLATRKKQRK------ELLLGHGTYS  186 (328)
Q Consensus       162 G~T~Lh~A~~~~~~~------~~Ll~~ga~~  186 (328)
                      |+||||+|+..++.+      ++|+++|+..
T Consensus       154 g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~  184 (232)
T 2rfa_A          154 GNTVLHILILQPNKTFACQMYNLLLSYDGGD  184 (232)
T ss_dssp             SCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred             CCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence            999999999999887      7899999854

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=5.7e-32  Score=236.35  Aligned_cols=175  Identities=23%  Similarity=0.334  Sum_probs=134.8

Q ss_pred             HhhccCCCChHHHHHHHcCCH-HHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCH
Q 046832           14 VKLKALRKGNPLHVASAYGHV-DFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTP   92 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp   92 (328)
                      ++..|..|.||||.|+..++. ++++.|++.|.++ +..|.+|+||||+|+..|+.+++++|++.++++ +.++.+|.||
T Consensus        45 ~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~  122 (269)
T 4b93_B           45 VSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVP  122 (269)
T ss_dssp             ------------------------------CCCCT-TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCH
T ss_pred             ccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCc
Confidence            466788899999999998876 4889999999998 889999999999999999999999999999998 8999999999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhc
Q 046832           93 LHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK  172 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~  172 (328)
                      +|.|+..++.++++.|++.+++ ++..|..|+||||+|+++|+.+++++|++      .|+++|.+|.+|+||||+|+..
T Consensus       123 l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~------~gadvn~~~~~g~t~Lh~A~~~  195 (269)
T 4b93_B          123 LHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQ------HGASINASNNKGNTALHEAVIE  195 (269)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCGGGHHHHHH------TTCCTTCBCTTSCBHHHHHHHT
T ss_pred             cccccccChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHH------CCCCCCccccCCCcHHHHHHHc
Confidence            9999999999999999999988 88999999999999999999999999998      6788999999999999999999


Q ss_pred             cchh--HHhhcCCCCCCchhhHHHhhhhcccCc
Q 046832          173 KQRK--ELLLGHGTYSSGRLELIALHQQRQLDS  203 (328)
Q Consensus       173 ~~~~--~~Ll~~ga~~~~~~~~~~~~~~~~~~~  203 (328)
                      |+.+  ++|+++|++      ++..+..+.++-
T Consensus       196 g~~~~v~~Ll~~Gad------~~~~d~~G~TpL  222 (269)
T 4b93_B          196 KHVFVVELLLLHGAS------VQVLNKRQRTAV  222 (269)
T ss_dssp             TCHHHHHHHHHTTCC------SCCCCTTSCCSG
T ss_pred             CCHHHHHHHHHCCCC------CCCcCCCCCCHH
Confidence            9999  999999994      444455555543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=3.1e-31  Score=226.97  Aligned_cols=165  Identities=24%  Similarity=0.288  Sum_probs=148.9

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHh----cCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCC
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIIN----VRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEK   89 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g   89 (328)
                      ++.+|.+|+||||+|++.|+.++++.|++    .+.++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g   79 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHG   79 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTS
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCC
Confidence            57889999999999999999999999997    55565 888999999999999999999999999999998 8899999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHHhCCc---ccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCcccccccccc-CCCCch
Q 046832           90 NTPLHCAAIKGKVHVLSEMLSACPE---CIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKD-EQGNTV  165 (328)
Q Consensus        90 ~tpLh~Aa~~g~~~~v~~Ll~~~~~---~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d-~~G~T~  165 (328)
                      .||||+|+..|+.+++++|++.++.   .++..|..|+||||+|+..|+.+++++|++      .|.+++.+| .+|+||
T Consensus        80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~------~g~~~~~~~~~~g~t~  153 (241)
T 1k1a_A           80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE------RGADIDAVDIKSGRSP  153 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTTCCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHH------cCCCcccccccCCCcH
Confidence            9999999999999999999999872   377888999999999999999999999998      677888888 899999


Q ss_pred             hhHHhhccchh--HHhhcCCCCC
Q 046832          166 LHLATRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       166 Lh~A~~~~~~~--~~Ll~~ga~~  186 (328)
                      ||+|+..++.+  ++|+++|++.
T Consensus       154 L~~A~~~~~~~~v~~Ll~~g~~~  176 (241)
T 1k1a_A          154 LIHAVENNSLSMVQLLLQHGANV  176 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999  9999999854

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=1.1e-31  Score=242.06  Aligned_cols=99  Identities=34%  Similarity=0.459  Sum_probs=88.5

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHH
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPL   93 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL   93 (328)
                      ++.+|..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|..|.|||
T Consensus        51 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L  128 (351)
T 3utm_A           51 CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPL  128 (351)
T ss_dssp             CCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHH
T ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHH
Confidence            3457888999999999999999999999999887 888899999999999999999999999999988 88889999999


Q ss_pred             HHHHHcCcHHHHHHHHHhCCc
Q 046832           94 HCAAIKGKVHVLSEMLSACPE  114 (328)
Q Consensus        94 h~Aa~~g~~~~v~~Ll~~~~~  114 (328)
                      |+|+..|+.+++++|++++++
T Consensus       129 ~~A~~~~~~~~v~~Ll~~g~~  149 (351)
T 3utm_A          129 HEAASKNRVEVCSLLLSHGAD  149 (351)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999887654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.97  E-value=3.7e-31  Score=226.20  Aligned_cols=165  Identities=22%  Similarity=0.264  Sum_probs=154.2

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHH
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPL   93 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL   93 (328)
                      ++.+|..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.++...+.+|..|.|||
T Consensus        37 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L  115 (237)
T 3b7b_A           37 IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM  115 (237)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHH
T ss_pred             cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHH
Confidence            4667899999999999999999999999999887 888999999999999999999999999999444488999999999


Q ss_pred             HHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhcc
Q 046832           94 HCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKK  173 (328)
Q Consensus        94 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~  173 (328)
                      |+|+..|+.+++++|++.+++ ++..|..|+||||+|++.|+.+++++|++      .|.+++.+|.+|+||||+|+..+
T Consensus       116 ~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~------~g~~~~~~~~~g~t~L~~A~~~~  188 (237)
T 3b7b_A          116 IWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLA------AKCDLHAVNIHGDSPLHIAAREN  188 (237)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHHHHHHHT------TTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHHHHHHHH------cCCCCCCcCCCCCCHHHHHHHhC
Confidence            999999999999999999988 88899999999999999999999999998      67889999999999999999999


Q ss_pred             chh--HHhhcCCCCC
Q 046832          174 QRK--ELLLGHGTYS  186 (328)
Q Consensus       174 ~~~--~~Ll~~ga~~  186 (328)
                      +.+  ++|+++|++.
T Consensus       189 ~~~~v~~Ll~~gad~  203 (237)
T 3b7b_A          189 RYDCVVLFLSRDSDV  203 (237)
T ss_dssp             CHHHHHHHHTTTCCT
T ss_pred             CHhHHHHHHHcCCCC
Confidence            998  9999999843

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=3e-31  Score=232.64  Aligned_cols=165  Identities=18%  Similarity=0.262  Sum_probs=154.0

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHH-----HCCCHHHHHHHHHcCccccccCCC
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIAS-----SIGHTGVVRELLKVEQKLCHQQGP   87 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa-----~~g~~~iv~~Ll~~~~~~~~~~~~   87 (328)
                      .++.+|.+|.||||+|+..|+.++++.|++.++...+..|..|+||||+|+     ..++.+++++|++.|.+. +..|.
T Consensus       103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~  181 (276)
T 4hbd_A          103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AKASQ  181 (276)
T ss_dssp             HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTT
T ss_pred             cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCC
Confidence            478999999999999999999999999999998445899999999999999     668999999999999877 88899


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhh
Q 046832           88 EKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLH  167 (328)
Q Consensus        88 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh  167 (328)
                      .|.||||+|+..|+.+++++|++.+++ ++..|..|+||||+|+.+|+.+++++|++     ..|++++.+|.+|+||||
T Consensus       182 ~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~-----~~gad~~~~d~~g~TpL~  255 (276)
T 4hbd_A          182 AGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLLLA-----VPSCDISLTDRDGSTALM  255 (276)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHT-----STTCCTTCCCTTSCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHh-----cCCCCCcCcCCCCCCHHH
Confidence            999999999999999999999999998 89999999999999999999999999997     268889999999999999


Q ss_pred             HHhhccchh--HHhhcCCC
Q 046832          168 LATRKKQRK--ELLLGHGT  184 (328)
Q Consensus       168 ~A~~~~~~~--~~Ll~~ga  184 (328)
                      +|+..|+.+  ++|++++.
T Consensus       256 ~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          256 VALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHHHHTCHHHHHHHHHHCC
T ss_pred             HHHHcCCHHHHHHHHhccC
Confidence            999999999  88887664

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=1.5e-31  Score=236.55  Aligned_cols=174  Identities=22%  Similarity=0.283  Sum_probs=117.2

Q ss_pred             hhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHH
Q 046832           15 KLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLH   94 (328)
Q Consensus        15 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh   94 (328)
                      +.+|..|.||||+|+..|+.+++++|++.|.++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~  144 (299)
T 1s70_B           67 NYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLD  144 (299)
T ss_dssp             TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHH
Confidence            445555555555555555555555555555554 555555555555555555555555555555555 555555555555


Q ss_pred             HHHHcCcHHHHHHHHHhCCccc--------------------------ccccCCCCCHHHHHHHcCChhhHHHHHHhhhc
Q 046832           95 CAAIKGKVHVLSEMLSACPECI--------------------------EDVTIQHDTALHLAIKNNQFEAITVLVNWIRG  148 (328)
Q Consensus        95 ~Aa~~g~~~~v~~Ll~~~~~~~--------------------------~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~  148 (328)
                      +|+..|+.++++.++.......                          ...+..|+||||+|+.+|+.+++++|++    
T Consensus       145 ~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----  220 (299)
T 1s70_B          145 IAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ----  220 (299)
T ss_dssp             HCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT----
T ss_pred             HHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH----
Confidence            5555555555555444322111                          1234678999999999999999999997    


Q ss_pred             CccccccccccCCCCchhhHHhhccchh--HHhhcCCCCCCchhhHHHhhhhcccC
Q 046832          149 MKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTYSSGRLELIALHQQRQLD  202 (328)
Q Consensus       149 ~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~~~~~~~~~~~~~~~~~  202 (328)
                        .|+++|.+|.+|+||||+|+..|+.+  ++|+++|+      +++..+..+.++
T Consensus       221 --~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga------d~~~~d~~g~t~  268 (299)
T 1s70_B          221 --ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC------DMEAVNKVGQTA  268 (299)
T ss_dssp             --TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCT
T ss_pred             --cCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCC------CCCCcCCCCCCH
Confidence              67889999999999999999999999  99999998      444455555554

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.97  E-value=3e-31  Score=225.86  Aligned_cols=162  Identities=24%  Similarity=0.302  Sum_probs=152.7

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHH
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPL   93 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL   93 (328)
                      ++.+|..|.||||+|+..|+.+++++|++++.++ +.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.|||
T Consensus        66 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L  143 (231)
T 3aji_A           66 VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAM  143 (231)
T ss_dssp             SCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             CCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHH
Confidence            4567899999999999999999999999999988 888999999999999999999999999999998 88999999999


Q ss_pred             HHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhcc
Q 046832           94 HCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKK  173 (328)
Q Consensus        94 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~  173 (328)
                      |+|+..|+.+++++|++.+.+ ++..|..|+||||+|++.++.+++++|++      .|++++.+|.+|+||||+|+..+
T Consensus       144 ~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~t~l~~A~~~~  216 (231)
T 3aji_A          144 HRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVT------QGASIYIENKEEKTPLQVAKGGL  216 (231)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCSCCCCTTSCCHHHHSCHHH
T ss_pred             HHHHHcCCHHHHHHHHhcCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHH------CCCCCCCCCCCCCCHHHHHHhhH
Confidence            999999999999999999988 88899999999999999999999999998      67889999999999999999888


Q ss_pred             chh--HHhhcCCC
Q 046832          174 QRK--ELLLGHGT  184 (328)
Q Consensus       174 ~~~--~~Ll~~ga  184 (328)
                      +.+  ++|.++|+
T Consensus       217 ~~~i~~lL~~~~a  229 (231)
T 3aji_A          217 GLILKRLAEGEEA  229 (231)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHccccc
Confidence            777  88887775

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=5.1e-31  Score=210.47  Aligned_cols=149  Identities=23%  Similarity=0.337  Sum_probs=140.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcC
Q 046832           21 KGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKG  100 (328)
Q Consensus        21 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g  100 (328)
                      ..||||.|++.|+.++++.|++.+++. + .|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   78 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence            468999999999999999999999876 3 5889999999999999999999999999998 889999999999999999


Q ss_pred             cHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HH
Q 046832          101 KVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--EL  178 (328)
Q Consensus       101 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~  178 (328)
                      +.+++++|++.+++ ++..|..|+||||+|+++|+.+++++|++      .|++++.+|.+|+||||+|+..++.+  ++
T Consensus        79 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~  151 (153)
T 1awc_B           79 HANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIK------YGADVHTQSKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             CHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999988 88899999999999999999999999998      67889999999999999999999887  54


Q ss_pred             h
Q 046832          179 L  179 (328)
Q Consensus       179 L  179 (328)
                      |
T Consensus       152 L  152 (153)
T 1awc_B          152 L  152 (153)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=6.6e-31  Score=218.96  Aligned_cols=163  Identities=20%  Similarity=0.273  Sum_probs=149.5

Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHH
Q 046832           18 ALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAA   97 (328)
Q Consensus        18 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa   97 (328)
                      +..+.||||.|+..|+.+.++.|++.++...+..|.+|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~   80 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAG   80 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence            4578999999999999999999999998455889999999999999999999999999999998 889999999999999


Q ss_pred             HcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccc---
Q 046832           98 IKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQ---  174 (328)
Q Consensus        98 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~---  174 (328)
                      ..|+.+++++|++.++..++..|..|+||||+|+++|+.+++++|++.     .+.+++.+|.+|+||||+|+..++   
T Consensus        81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----g~~~~~~~~~~g~t~L~~A~~~~~~~~  155 (201)
T 3hra_A           81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED-----GREDIDFQNDFGYTALIEAVGLREGNQ  155 (201)
T ss_dssp             HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHH-----CCCCTTCCCTTSCCHHHHHHHSSCCSH
T ss_pred             HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHc-----CCCCcCCCCCCCCCHHHHHHHhccchh
Confidence            999999999999777766899999999999999999999999999983     227899999999999999999887   


Q ss_pred             --hh--HHhhcCCCCC
Q 046832          175 --RK--ELLLGHGTYS  186 (328)
Q Consensus       175 --~~--~~Ll~~ga~~  186 (328)
                        .+  ++|+++|++.
T Consensus       156 ~~~~~v~~Ll~~ga~~  171 (201)
T 3hra_A          156 LYQDIVKLLMENGADQ  171 (201)
T ss_dssp             HHHHHHHHHHHTTCCT
T ss_pred             hHHHHHHHHHHCCCCC
Confidence              55  9999999844

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.1e-31  Score=232.42  Aligned_cols=160  Identities=20%  Similarity=0.219  Sum_probs=146.0

Q ss_pred             ccCCCChHHHHHHHc---CCHHHHHHHHhcCCCccc----------ccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccc
Q 046832           17 KALRKGNPLHVASAY---GHVDFVKEIINVRPDLAH----------EVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH   83 (328)
Q Consensus        17 ~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~----------~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~   83 (328)
                      +|..|.||||+|+..   |+.+++++|++.+.+...          ..|..|+||||+|+..|+.+++++|+++|+++ +
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~  117 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-H  117 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-T
T ss_pred             CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-C
Confidence            799999999999999   999999999998866521          23478999999999999999999999999998 7


Q ss_pred             cCCCC-------------CCCHHHHHHHcCcHHHHHHHHH---hCCcccccccCCCCCHHHHHHH--cCChh-------h
Q 046832           84 QQGPE-------------KNTPLHCAAIKGKVHVLSEMLS---ACPECIEDVTIQHDTALHLAIK--NNQFE-------A  138 (328)
Q Consensus        84 ~~~~~-------------g~tpLh~Aa~~g~~~~v~~Ll~---~~~~~~~~~~~~g~t~Lh~A~~--~~~~~-------~  138 (328)
                      .+|..             |.||||+|+..|+.+++++|++   .+.+ ++.+|..|+||||+|+.  .++.+       +
T Consensus       118 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~i  196 (256)
T 2etb_A          118 LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHM  196 (256)
T ss_dssp             CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred             cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHH
Confidence            77776             9999999999999999999999   7777 89999999999999999  78888       9


Q ss_pred             HHHHHHhhhcCcccccc-------ccccCCCCchhhHHhhccchh--HHhhcCCC
Q 046832          139 ITVLVNWIRGMKREEIF-------NMKDEQGNTVLHLATRKKQRK--ELLLGHGT  184 (328)
Q Consensus       139 ~~~Ll~~~~~~~~~~~~-------~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga  184 (328)
                      +++|++      .|+++       +.+|.+|+||||+|+..|+.+  ++|+++|+
T Consensus       197 v~~Ll~------~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~  245 (256)
T 2etb_A          197 YDGLLQ------MGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF  245 (256)
T ss_dssp             HHHHHH------HHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHH------cCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence            999998      56667       899999999999999999999  99999987

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=2.9e-32  Score=233.27  Aligned_cols=166  Identities=22%  Similarity=0.273  Sum_probs=146.1

Q ss_pred             hhccCCCChHHHHHHHcCCHHHHHHHHhcCCC---cccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCC
Q 046832           15 KLKALRKGNPLHVASAYGHVDFVKEIINVRPD---LAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNT   91 (328)
Q Consensus        15 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~t   91 (328)
                      +.+|.+|.||||+|+..|+.++++.|++.+..   ..+..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.|
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t   80 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNT   80 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCC
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCC
Confidence            46789999999999999999999999998763   34888999999999999999999999999999998 889999999


Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCc-----ccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccC-CCCch
Q 046832           92 PLHCAAIKGKVHVLSEMLSACPE-----CIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDE-QGNTV  165 (328)
Q Consensus        92 pLh~Aa~~g~~~~v~~Ll~~~~~-----~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~-~G~T~  165 (328)
                      |||+|+..|+.+++++|++.+++     ..+..+..|+||||+|+.+|+.+++++|++      .|++++.+|. +|+||
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~~g~tp  154 (236)
T 1ikn_D           81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS------LGADVNAQEPCNGRTA  154 (236)
T ss_dssp             HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH------HTCCTTCCCTTTCCCH
T ss_pred             HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCCCH
Confidence            99999999999999999998863     256778899999999999999999999998      6788899998 99999


Q ss_pred             hhHHhhccchh--HHhhcCCCCCC
Q 046832          166 LHLATRKKQRK--ELLLGHGTYSS  187 (328)
Q Consensus       166 Lh~A~~~~~~~--~~Ll~~ga~~~  187 (328)
                      ||+|+..++.+  ++|+++|+...
T Consensus       155 L~~A~~~~~~~~v~~Ll~~ga~~~  178 (236)
T 1ikn_D          155 LHLAVDLQNPDLVSLLLKCGADVN  178 (236)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCSC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999  99999999543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=5.6e-31  Score=210.67  Aligned_cols=153  Identities=24%  Similarity=0.353  Sum_probs=141.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHc
Q 046832           20 RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIK   99 (328)
Q Consensus        20 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~   99 (328)
                      +|.||||.|+..|+.++++.|++..+...+..|..|+||||+ +..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus         1 r~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAART   78 (156)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CcchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHc
Confidence            357999999999999999999998433448889999999999 9999999999999999998 89999999999999999


Q ss_pred             CcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--H
Q 046832          100 GKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--E  177 (328)
Q Consensus       100 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~  177 (328)
                      |+.+++++|++.+++ ++..|..|+||||+|+++|+.+++++|++      . .+++.+|.+|+||||+|+..++.+  +
T Consensus        79 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~-~~~~~~~~~g~t~l~~A~~~~~~~~v~  150 (156)
T 1bd8_A           79 GFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAA------E-SDLHRRDARGLTPLELALQRGAQDLVD  150 (156)
T ss_dssp             TCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHT------T-SCTTCCCTTSCCHHHHHHHSCCHHHHH
T ss_pred             CcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHh------c-cCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            999999999999987 88899999999999999999999999997      4 778999999999999999999988  7


Q ss_pred             HhhcC
Q 046832          178 LLLGH  182 (328)
Q Consensus       178 ~Ll~~  182 (328)
                      +|+++
T Consensus       151 ~Ll~~  155 (156)
T 1bd8_A          151 ILQGH  155 (156)
T ss_dssp             HHHTT
T ss_pred             HHHhh
Confidence            77754

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.97  E-value=1.1e-30  Score=230.05  Aligned_cols=164  Identities=23%  Similarity=0.293  Sum_probs=147.6

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHH
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPL   93 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL   93 (328)
                      ++.+|.+|.||||+|+..|+.++++.|++.+.++ +.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|.|||
T Consensus        52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L  129 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPL  129 (285)
T ss_dssp             TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHH
T ss_pred             ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHH
Confidence            4668899999999999999999999999999887 888999999999999999999999999999988 88999999999


Q ss_pred             HHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhcc
Q 046832           94 HCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKK  173 (328)
Q Consensus        94 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~  173 (328)
                      |+|+..|+.+++++|++.+++ ++. +..|+||||+|+..|+.+++++|++      .+.+++.+|.+|+||||+|+..+
T Consensus       130 ~~A~~~~~~~~v~~Ll~~g~~-~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~d~~g~t~L~~A~~~~  201 (285)
T 3d9h_A          130 FNACVSGSWDCVNLLLQHGAS-VQP-ESDLASPIHEAARRGHVECVNSLIA------YGGNIDHKISHLGTPLYLACENQ  201 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC-SSC-SCTTSCHHHHHHHHTCHHHHHHHHH------TTCCTTCCBTTTBCHHHHHHHTT
T ss_pred             HHHHHcCHHHHHHHHHHCCCC-CCC-CCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCCHHHHHHHcC
Confidence            999999999999999999887 443 4458999999999999999999998      57788999999999999999999


Q ss_pred             chh--HHhhcCCCCCC
Q 046832          174 QRK--ELLLGHGTYSS  187 (328)
Q Consensus       174 ~~~--~~Ll~~ga~~~  187 (328)
                      +.+  ++|+++|+...
T Consensus       202 ~~~~v~~Ll~~ga~~~  217 (285)
T 3d9h_A          202 QRACVKKLLESGADVN  217 (285)
T ss_dssp             CHHHHHHHHHTTCCTT
T ss_pred             cHHHHHHHHHCCCCCC
Confidence            988  89999988543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.97  E-value=6.8e-31  Score=231.44  Aligned_cols=162  Identities=23%  Similarity=0.322  Sum_probs=150.2

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCH
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTP   92 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp   92 (328)
                      .++.+|.+|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|+++|+++ +. +.+|.||
T Consensus        84 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~-~~~g~t~  160 (285)
T 3d9h_A           84 AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QP-ESDLASP  160 (285)
T ss_dssp             CSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SC-SCTTSCH
T ss_pred             CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-CC-CCCCCCH
Confidence            35678999999999999999999999999999888 889999999999999999999999999999987 43 4459999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhc
Q 046832           93 LHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK  172 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~  172 (328)
                      ||+|+..|+.+++++|++.+++ ++..|..|+||||+|+.+|+.+++++|++      .|++++ +|.+|+||||+|+..
T Consensus       161 L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~-~~~~g~t~L~~A~~~  232 (285)
T 3d9h_A          161 IHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLE------SGADVN-QGKGQDSPLHAVVRT  232 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHH------TTCCTT-CCBTTBCHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHH------CCCCCC-CCCCCCCHHHHHHHc
Confidence            9999999999999999999988 88899999999999999999999999998      566777 489999999999999


Q ss_pred             cchh--HHhhcCCCC
Q 046832          173 KQRK--ELLLGHGTY  185 (328)
Q Consensus       173 ~~~~--~~Ll~~ga~  185 (328)
                      ++.+  ++|+++|++
T Consensus       233 ~~~~~v~~Ll~~gad  247 (285)
T 3d9h_A          233 ASEELACLLMDFGAD  247 (285)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHCCCC
Confidence            9999  999999984

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=6.4e-31  Score=223.25  Aligned_cols=157  Identities=29%  Similarity=0.380  Sum_probs=146.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcC--ccccccCCCCCCCHHHHHHH
Q 046832           21 KGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVE--QKLCHQQGPEKNTPLHCAAI   98 (328)
Q Consensus        21 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~--~~~~~~~~~~g~tpLh~Aa~   98 (328)
                      |+||||.|++.|+.++++.|++.+++..+..|.+|+||||+|+..|+.+++++|+++|  .++....|..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            7899999999999999999999999987779999999999999999999999999999  55533388999999999999


Q ss_pred             cCcHHHHHHHHHhC--CcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh
Q 046832           99 KGKVHVLSEMLSAC--PECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK  176 (328)
Q Consensus        99 ~g~~~~v~~Ll~~~--~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~  176 (328)
                      .|+.+++++|++.+  ++ ++..+..|+||||+|+..|+.+++++|++      .|.+++.+|.+|+||||+|+..++.+
T Consensus        82 ~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~------~g~~~~~~~~~g~t~L~~A~~~~~~~  154 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIE------NGASVRIKDKFNQIPLHRAASVGSLK  154 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH------TTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             cCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHH------cCCCccccCCCCCCHHHHHHHcCCHH
Confidence            99999999999998  55 78889999999999999999999999998      67889999999999999999999999


Q ss_pred             --HHhhcCC-C
Q 046832          177 --ELLLGHG-T  184 (328)
Q Consensus       177 --~~Ll~~g-a  184 (328)
                        ++|+++| +
T Consensus       155 ~v~~Ll~~g~~  165 (228)
T 2dzn_A          155 LIELLCGLGKS  165 (228)
T ss_dssp             HHHHHHTTTCC
T ss_pred             HHHHHHhcCcc
Confidence              9999999 5

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=4.8e-31  Score=232.42  Aligned_cols=169  Identities=16%  Similarity=0.078  Sum_probs=112.3

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHH
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPL   93 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL   93 (328)
                      ++.+|..|.||||+|+..|+.++++.|++.+.++ +..  +|+||||+|+..|+.+++++|+++|+++ +.+|..|.|||
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L   99 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTAL   99 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHH
Confidence            4666777777777777777777777777776665 333  3667777777777777777777766666 66666666677


Q ss_pred             HHHHHcCcHHHHHHHHHhCCcccccccCCC-CCHHHHHHHcCChhhHHHHHHhhhcC-----------------------
Q 046832           94 HCAAIKGKVHVLSEMLSACPECIEDVTIQH-DTALHLAIKNNQFEAITVLVNWIRGM-----------------------  149 (328)
Q Consensus        94 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g-~t~Lh~A~~~~~~~~~~~Ll~~~~~~-----------------------  149 (328)
                      |+|+..|+.+++++|++.+++ ++..+..| .||||+|+..|+.+++++|++++...                       
T Consensus       100 ~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~  178 (285)
T 3kea_A          100 YYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMI  178 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHH
Confidence            766666666666666666655 55555555 46666666555555555555543221                       


Q ss_pred             ---ccccccccccCCCCch-hhHHhhccchh--HHhhcCCCCCC
Q 046832          150 ---KREEIFNMKDEQGNTV-LHLATRKKQRK--ELLLGHGTYSS  187 (328)
Q Consensus       150 ---~~~~~~~~~d~~G~T~-Lh~A~~~~~~~--~~Ll~~ga~~~  187 (328)
                         +.|+++|.+|.+|+|| ||+|+..++.+  ++|+++|++..
T Consensus       179 ~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~  222 (285)
T 3kea_A          179 LLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY  222 (285)
T ss_dssp             HHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCST
T ss_pred             HHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence               0466777788888886 88888877777  77888887443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=4.1e-31  Score=231.11  Aligned_cols=163  Identities=16%  Similarity=0.163  Sum_probs=145.2

Q ss_pred             hccCCCChHHHHHHHc---CCHHHHHHHHhcCCCc------c----cccCCCCCcHHHHHHHCCCHHHHHHHHHcCcccc
Q 046832           16 LKALRKGNPLHVASAY---GHVDFVKEIINVRPDL------A----HEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC   82 (328)
Q Consensus        16 ~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~------~----~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~   82 (328)
                      .+|..|.||||+|+..   |+.+++++|++.+.+.      .    ...|..|+||||+|+..|+.+++++|+++|+++ 
T Consensus        49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-  127 (273)
T 2pnn_A           49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-  127 (273)
T ss_dssp             SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-
T ss_pred             ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-
Confidence            3588999999999987   9999999999987542      1    225679999999999999999999999999998 


Q ss_pred             ccCCC--------------CCCCHHHHHHHcCcHHHHHHHHH---hCCcccccccCCCCCHHHHHHHcCC---------h
Q 046832           83 HQQGP--------------EKNTPLHCAAIKGKVHVLSEMLS---ACPECIEDVTIQHDTALHLAIKNNQ---------F  136 (328)
Q Consensus        83 ~~~~~--------------~g~tpLh~Aa~~g~~~~v~~Ll~---~~~~~~~~~~~~g~t~Lh~A~~~~~---------~  136 (328)
                      +.++.              .|.||||+|+..|+.+++++|++   .+.+ ++.+|..|+||||+|++.++         .
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~  206 (273)
T 2pnn_A          128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVT  206 (273)
T ss_dssp             TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHH
T ss_pred             CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHH
Confidence            77776              79999999999999999999999   7777 89999999999999999988         7


Q ss_pred             hhHHHHHHhhhcCccccccc-------cccCCCCchhhHHhhccchh--HHhhcCCCCC
Q 046832          137 EAITVLVNWIRGMKREEIFN-------MKDEQGNTVLHLATRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       137 ~~~~~Ll~~~~~~~~~~~~~-------~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~  186 (328)
                      +++++|++.      |+++|       .+|.+|+||||+|+..|+.+  ++|+++|+.+
T Consensus       207 ~~v~~Ll~~------ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~d  259 (273)
T 2pnn_A          207 SMYNEILIL------GAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHE  259 (273)
T ss_dssp             HHHHHHHHH------HHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHh------hhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCC
Confidence            999999984      55564       59999999999999999999  9999999954

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=4.8e-31  Score=228.85  Aligned_cols=159  Identities=16%  Similarity=0.183  Sum_probs=142.7

Q ss_pred             CCCChHHHHHH---HcCCHHHHHHHHhcCCCc----------ccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccC
Q 046832           19 LRKGNPLHVAS---AYGHVDFVKEIINVRPDL----------AHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQ   85 (328)
Q Consensus        19 ~~g~t~Lh~A~---~~g~~~~v~~Ll~~~~~~----------~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~   85 (328)
                      ..|.||||+|+   +.|+.+++++|++.+.+.          .+..|.+|+||||+|+..|+.+++++|+++|+++ +.+
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~  122 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQ  122 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCC
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-Ccc
Confidence            77999999999   779999999999986431          2445668999999999999999999999999998 777


Q ss_pred             C--------------CCCCCHHHHHHHcCcHHHHHHHHH---hCCcccccccCCCCCHHHHHHHcCC---------hhhH
Q 046832           86 G--------------PEKNTPLHCAAIKGKVHVLSEMLS---ACPECIEDVTIQHDTALHLAIKNNQ---------FEAI  139 (328)
Q Consensus        86 ~--------------~~g~tpLh~Aa~~g~~~~v~~Ll~---~~~~~~~~~~~~g~t~Lh~A~~~~~---------~~~~  139 (328)
                      +              .+|.||||+|+..|+.+++++|++   .+.+ ++..|..|+||||+|++.++         .+++
T Consensus       123 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v  201 (260)
T 3jxi_A          123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMY  201 (260)
T ss_dssp             CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred             ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHH
Confidence            7              689999999999999999999999   7777 89999999999999998887         6999


Q ss_pred             HHHHHhhhcCcccccc-------ccccCCCCchhhHHhhccchh--HHhhcCCCC
Q 046832          140 TVLVNWIRGMKREEIF-------NMKDEQGNTVLHLATRKKQRK--ELLLGHGTY  185 (328)
Q Consensus       140 ~~Ll~~~~~~~~~~~~-------~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~  185 (328)
                      ++|++      .|+++       +.+|.+|+||||+|+..|+.+  ++|+++|+.
T Consensus       202 ~~Ll~------~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          202 DLLLI------KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA  250 (260)
T ss_dssp             HHHHH------HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHH------hCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99998      45555       789999999999999999999  999999873

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=6.2e-31  Score=239.36  Aligned_cols=167  Identities=18%  Similarity=0.207  Sum_probs=94.2

Q ss_pred             hhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCcccc------------
Q 046832           15 KLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC------------   82 (328)
Q Consensus        15 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~------------   82 (328)
                      +.+|.+|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+..|+.+++++|+++|++..            
T Consensus        14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~   92 (364)
T 3ljn_A           14 IKSDDENMEKIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAV   92 (364)
T ss_dssp             --CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHH
Confidence            344555555555555555555555555555544 4455555555555555555555555555554320            


Q ss_pred             ----------------------cc-----------------CCCCCCCHHHHHHHcC--cHHHHHHHHHhCCcccccccC
Q 046832           83 ----------------------HQ-----------------QGPEKNTPLHCAAIKG--KVHVLSEMLSACPECIEDVTI  121 (328)
Q Consensus        83 ----------------------~~-----------------~~~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~~~  121 (328)
                                            +.                 +|.+|.||||+|+..|  +.+++++|++.+++ ++..|.
T Consensus        93 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~-~~~~d~  171 (364)
T 3ljn_A           93 MANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDK  171 (364)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC-TTCCCT
T ss_pred             HcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC-CcccCC
Confidence                                  22                 4555666666666666  66666666666655 556666


Q ss_pred             CCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcCCC
Q 046832          122 QHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGT  184 (328)
Q Consensus       122 ~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga  184 (328)
                      .|+||||+|+.+|+.+++++|++++.+. .+.++|.+|.+|+||||+|+..|+.+  ++|+++|+
T Consensus       172 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga  235 (364)
T 3ljn_A          172 ADETPLMRAMEFRNREALDLMMDTVPSK-SSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI  235 (364)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHCSCS-SSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccccc-ccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            6666666666666666666666632221 22236666666666666666666666  66666666

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.97  E-value=1.7e-30  Score=237.46  Aligned_cols=166  Identities=19%  Similarity=0.201  Sum_probs=153.1

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcC---ccccccCCCCC
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVE---QKLCHQQGPEK   89 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~---~~~~~~~~~~g   89 (328)
                      +++.+|..|.||||+|+..|+.+++++|++.|.++ +..|.+|.||||+|+..|+.+++++|++++   .++ +..|.+|
T Consensus       158 ~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g  235 (373)
T 2fo1_E          158 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNG  235 (373)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTS
T ss_pred             CCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCC
Confidence            46788999999999999999999999999999998 888999999999999999999999999988   566 8899999


Q ss_pred             CCHHHHHHHcC---cHHHHHHHHHhCCccccc--------ccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccc
Q 046832           90 NTPLHCAAIKG---KVHVLSEMLSACPECIED--------VTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMK  158 (328)
Q Consensus        90 ~tpLh~Aa~~g---~~~~v~~Ll~~~~~~~~~--------~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  158 (328)
                      .||||+|+..|   +.+++++|++.+++ ++.        .|..|+||||+|+.+|+.+++++|++.     .+.++|.+
T Consensus       236 ~t~L~~A~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-----~~~~~n~~  309 (373)
T 2fo1_E          236 MTALMIVAHNEGRDQVASAKLLVEKGAK-VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE-----KGSNKDKQ  309 (373)
T ss_dssp             CCHHHHHHHSCSTTHHHHHHHHHHHTCC-SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHH-----SCCCTTCC
T ss_pred             CCHHHHHHHhCCcchHHHHHHHHHCCCC-cccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHh-----cCCCccCc
Confidence            99999999998   89999999999987 443        567899999999999999999999983     45889999


Q ss_pred             cCCCCchhhHHhhccchh--HHhhcCCCCC
Q 046832          159 DEQGNTVLHLATRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       159 d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~  186 (328)
                      |.+|+||||+|+..|+.+  ++|+++|+..
T Consensus       310 d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~  339 (373)
T 2fo1_E          310 DEDGKTPIMLAAQEGRIEVVMYLIQQGASV  339 (373)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            999999999999999999  9999999954

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=8.4e-31  Score=230.85  Aligned_cols=146  Identities=16%  Similarity=0.163  Sum_probs=129.1

Q ss_pred             HcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHH
Q 046832           30 AYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEML  109 (328)
Q Consensus        30 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll  109 (328)
                      +..+.+.+..++..+ ++ +.+|.+|+||||+|+..|+.+++++|+++|+++ +.+  +|.||||+|+..|+.+++++|+
T Consensus         8 ~~~~~~~v~~lL~~~-~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~~Ll   82 (285)
T 3kea_A            8 NTWKSKQLKSFLSSK-DT-FKADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKILL   82 (285)
T ss_dssp             GGCCHHHHHHHHHST-TT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHHHHH
T ss_pred             HhcCHHHHHHHHHhC-CC-CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHHHHH
Confidence            344444455555444 34 789999999999999999999999999999988 555  5999999999999999999999


Q ss_pred             HhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCC-CchhhHHhhccchh--HHhhcCCCCC
Q 046832          110 SACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQG-NTVLHLATRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       110 ~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G-~T~Lh~A~~~~~~~--~~Ll~~ga~~  186 (328)
                      +.+++ ++..|..|+||||+|+.+|+.+++++|++      .|++++.+|.+| +||||+|+..++.+  ++|+++|+..
T Consensus        83 ~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~------~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~  155 (285)
T 3kea_A           83 FSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVK------KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST  155 (285)
T ss_dssp             HTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH------HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT
T ss_pred             HCCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHh------cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc
Confidence            99988 88899999999999999999999999998      678899999999 89999999999999  9999999866


Q ss_pred             C
Q 046832          187 S  187 (328)
Q Consensus       187 ~  187 (328)
                      .
T Consensus       156 ~  156 (285)
T 3kea_A          156 F  156 (285)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=3.2e-30  Score=234.63  Aligned_cols=164  Identities=21%  Similarity=0.219  Sum_probs=146.0

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCccc----------------------------------c---------
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAH----------------------------------E---------   50 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~----------------------------------~---------   50 (328)
                      ++.+|..|.||||+|+..|+.+++++|++.+.+...                                  .         
T Consensus        46 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  125 (364)
T 3ljn_A           46 PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDERE  125 (364)
T ss_dssp             TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHh
Confidence            456777778888888888888888888777654421                                  1         


Q ss_pred             --------cCCCCCcHHHHHHHCC--CHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcc----c
Q 046832           51 --------VNQDGFSPMHIASSIG--HTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPEC----I  116 (328)
Q Consensus        51 --------~d~~g~tpLh~Aa~~g--~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~----~  116 (328)
                              .|.+|.||||+|+..|  +.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+++.    +
T Consensus       126 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~  204 (364)
T 3ljn_A          126 VNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL  204 (364)
T ss_dssp             EEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCT
T ss_pred             hhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccc
Confidence                    6778999999999999  999999999999998 899999999999999999999999999998763    6


Q ss_pred             ccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcCCC
Q 046832          117 EDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGT  184 (328)
Q Consensus       117 ~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga  184 (328)
                      +..|..|+||||+|+.+|+.+++++|++      .|+++|.+|.+|+||||+|+..++.+  ++|+++|+
T Consensus       205 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~  268 (364)
T 3ljn_A          205 DYANKQGNSHLHWAILINWEDVAMRFVE------MGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTD  268 (364)
T ss_dssp             TCCCTTCCCTTHHHHTTTCHHHHHHHHT------TTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSC
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCC
Confidence            7888999999999999999999999998      68889999999999999999999999  99999987

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=7.6e-30  Score=207.17  Aligned_cols=132  Identities=27%  Similarity=0.384  Sum_probs=125.3

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCH
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTP   92 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp   92 (328)
                      +++.+|.+|+||||+|+..|+.++++.|++.+.++ +.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||
T Consensus        29 dvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadv-n~~d~~G~Tp  106 (169)
T 4gpm_A           29 DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTP  106 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCH
Confidence            45789999999999999999999999999999998 889999999999999999999999999999998 9999999999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhh
Q 046832           93 LHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIR  147 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~  147 (328)
                      ||+|+..|+.+++++|++.+++ ++.+|.+|+||||+|+++|+.+++++|+++|+
T Consensus       107 Lh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  160 (169)
T 4gpm_A          107 LHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG  160 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            9999999999999999999998 88999999999999999999999999998443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=1.4e-29  Score=216.05  Aligned_cols=164  Identities=22%  Similarity=0.248  Sum_probs=108.1

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHH
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPL   93 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL   93 (328)
                      ++.+|..|.||||.|+..|+.+++++|++.+++.....+..|.||||+|+..|+.+++++|++.|+++ +.+|..|.|||
T Consensus        35 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l  113 (240)
T 3eu9_A           35 VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCI  113 (240)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHH
Confidence            34456666677777777777777777776666664455555667777777777777777777666666 66666667777


Q ss_pred             HHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCC-hhhHHHHHHhhhcCccccccccccC-CCCchhhHHhh
Q 046832           94 HCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQ-FEAITVLVNWIRGMKREEIFNMKDE-QGNTVLHLATR  171 (328)
Q Consensus        94 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~-~~~~~~Ll~~~~~~~~~~~~~~~d~-~G~T~Lh~A~~  171 (328)
                      |+|+..|+.+++++|++.+.+ ++..+..|+||||+|+..++ .+++++|++      .+.+++.++. +|+||||+|+.
T Consensus       114 ~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~------~~~~~~~~~~~~g~t~L~~A~~  186 (240)
T 3eu9_A          114 HLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLT------FNVSVNLGDKYHKNTALHWAVL  186 (240)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCSSTTHHHHHH------TTCCTTCCCTTTCCCHHHHHHH
T ss_pred             HHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHhCChHHHHHHHHh------cCCCcchhhccCCCcHHHHHHH
Confidence            777777777777777666665 56666666677776665444 566666665      4555666665 67777777777


Q ss_pred             ccchh--HHhhcCCCC
Q 046832          172 KKQRK--ELLLGHGTY  185 (328)
Q Consensus       172 ~~~~~--~~Ll~~ga~  185 (328)
                      .++.+  ++|+++|++
T Consensus       187 ~~~~~~v~~Ll~~g~~  202 (240)
T 3eu9_A          187 AGNTTVISLLLEAGAN  202 (240)
T ss_dssp             HTCHHHHHHHHHHTCC
T ss_pred             cCCHHHHHHHHHcCCC
Confidence            66666  666666663

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.2e-30  Score=222.58  Aligned_cols=159  Identities=19%  Similarity=0.195  Sum_probs=138.3

Q ss_pred             hhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHH
Q 046832           15 KLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLH   94 (328)
Q Consensus        15 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh   94 (328)
                      +..+.+|.||||.|+..|+.++++.|++.+.++ +.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||
T Consensus        15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh   92 (229)
T 2vge_A           15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLH   92 (229)
T ss_dssp             CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHH
T ss_pred             cccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHH
Confidence            345667889999999999999999999999988 889999999999999999999999999999998 899999999999


Q ss_pred             HHHHcCcHHHHHHHHHhCCccccccc-CCCCCHHHHH--HHcCChhhHHHHHHhhhcCc---------------------
Q 046832           95 CAAIKGKVHVLSEMLSACPECIEDVT-IQHDTALHLA--IKNNQFEAITVLVNWIRGMK---------------------  150 (328)
Q Consensus        95 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~A--~~~~~~~~~~~Ll~~~~~~~---------------------  150 (328)
                      +|+..|+.+++++|++.+++ ++..+ ..|+||||+|  +..|+.+++++|++.+.+.+                     
T Consensus        93 ~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~  171 (229)
T 2vge_A           93 CAASCNDTVICMALVQHGAA-IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDEL  171 (229)
T ss_dssp             HHHHTTCHHHHHHHHTTTCC-TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBC
T ss_pred             HHHHcCCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcccccc
Confidence            99999999999999999998 66665 6999999999  99999999999999765432                     


Q ss_pred             ---cccc--cccccCCCCchhhHHhhccchh
Q 046832          151 ---REEI--FNMKDEQGNTVLHLATRKKQRK  176 (328)
Q Consensus       151 ---~~~~--~~~~d~~G~T~Lh~A~~~~~~~  176 (328)
                         .|.+  ++.+|.+|+||||+|+..|+.+
T Consensus       172 ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~  202 (229)
T 2vge_A          172 SFREGESVTVLRRDGPEETDWWWAALHGQEG  202 (229)
T ss_dssp             CBCTTCEEEEEESSCTTCSSEEEEEETTEEE
T ss_pred             CccccccccccccCCCcccHHHHHHHcCCcc
Confidence               1222  5566777777777777776666

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=1.4e-29  Score=235.79  Aligned_cols=157  Identities=24%  Similarity=0.361  Sum_probs=79.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHc
Q 046832           20 RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIK   99 (328)
Q Consensus        20 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~   99 (328)
                      +|.||||+|+..|+.++++.|++.+.++ +..+..|.||||+|+..|+.+++++|+++++++ +.+|..|.||||+|+..
T Consensus       211 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~  288 (437)
T 1n11_A          211 NGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQE  288 (437)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHc
Confidence            3444444444444444444444444433 344444445555555555555555555544444 44455555555555555


Q ss_pred             CcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--H
Q 046832          100 GKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--E  177 (328)
Q Consensus       100 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~  177 (328)
                      |+.+++++|++++.+ ++..|..|+||||+|+.+|+.+++++|++      .|+++|.+|..|+||||+|+..++.+  +
T Consensus       289 ~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~gad~n~~~~~g~t~L~~A~~~g~~~iv~  361 (437)
T 1n11_A          289 GHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQ------HQADVNAKTKLGYSPLHQAAQQGHTDIVT  361 (437)
T ss_dssp             TCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHH------TTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHhCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHh------cCCCCCCCCCCCCCHHHHHHHCChHHHHH
Confidence            555555555555444 44455555555555555555555555554      34455555555555555555555555  5


Q ss_pred             HhhcCCCC
Q 046832          178 LLLGHGTY  185 (328)
Q Consensus       178 ~Ll~~ga~  185 (328)
                      +|+++|++
T Consensus       362 ~Ll~~ga~  369 (437)
T 1n11_A          362 LLLKNGAS  369 (437)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHCcCC
Confidence            55555553

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=4.1e-29  Score=218.56  Aligned_cols=161  Identities=22%  Similarity=0.218  Sum_probs=144.2

Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHH
Q 046832           18 ALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAA   97 (328)
Q Consensus        18 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa   97 (328)
                      +..|.||||+|+..|+.+++++|++.+.++ +..|.+|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~  113 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAA  113 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHH
Confidence            778899999999999999999999999887 788999999999999999999999999999988 888999999999999


Q ss_pred             HcCcHHHHHHHHHhCCcccccc----------cCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhh
Q 046832           98 IKGKVHVLSEMLSACPECIEDV----------TIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLH  167 (328)
Q Consensus        98 ~~g~~~~v~~Ll~~~~~~~~~~----------~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh  167 (328)
                      ..|+.+++++|++.+++ ++..          +..|.||||+|+..|+.+++++|++.     .+.+++.+|.+|+||||
T Consensus       114 ~~~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----~~~~~~~~~~~g~t~l~  187 (285)
T 1wdy_A          114 VYGKVKALKFLYKRGAN-VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE-----MGADVNACDNMGRNALI  187 (285)
T ss_dssp             HTTCHHHHHHHHHTTCC-TTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT-----SCCCTTCCCTTSCCHHH
T ss_pred             HhCCHHHHHHHHHhCCC-cccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh-----cCCCCCccCCCCCCHHH
Confidence            99999999999999887 4444          67899999999999999999999982     47888999999999999


Q ss_pred             HHhhccc----hh--HHhhcCCCCC
Q 046832          168 LATRKKQ----RK--ELLLGHGTYS  186 (328)
Q Consensus       168 ~A~~~~~----~~--~~Ll~~ga~~  186 (328)
                      +|+..++    .+  ++|+++|+..
T Consensus       188 ~a~~~~~~~~~~~i~~~Ll~~g~~~  212 (285)
T 1wdy_A          188 HALLSSDDSDVEAITHLLLDHGADV  212 (285)
T ss_dssp             HHHHCSCTTTHHHHHHHHHHTTCCS
T ss_pred             HHHHccccchHHHHHHHHHHcCCCC
Confidence            9999888    44  8889998854

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=4e-29  Score=218.61  Aligned_cols=164  Identities=24%  Similarity=0.266  Sum_probs=147.4

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccC--------
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQ--------   85 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~--------   85 (328)
                      ++.+|..|.||||+|+..|+.+++++|++++.++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+        
T Consensus        65 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~  142 (285)
T 1wdy_A           65 PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKEDQE  142 (285)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHH
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHHHH
Confidence            4667899999999999999999999999999888 888999999999999999999999999999887 555        


Q ss_pred             --CCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCC----hhhHHHHHHhhhcCcccccccccc
Q 046832           86 --GPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQ----FEAITVLVNWIRGMKREEIFNMKD  159 (328)
Q Consensus        86 --~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~----~~~~~~Ll~~~~~~~~~~~~~~~d  159 (328)
                        +..|.||||+|+..|+.+++++|++..+..++..|..|+||||+|+..++    .+++++|++      .|.+++.+|
T Consensus       143 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~------~g~~~~~~~  216 (285)
T 1wdy_A          143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD------HGADVNVRG  216 (285)
T ss_dssp             HTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH------TTCCSSCCC
T ss_pred             hhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHH------cCCCCCCcC
Confidence              78899999999999999999999998444488889999999999999998    889999998      678889999


Q ss_pred             CCCCchhhHHhhccchh--HHhhc-CCCC
Q 046832          160 EQGNTVLHLATRKKQRK--ELLLG-HGTY  185 (328)
Q Consensus       160 ~~G~T~Lh~A~~~~~~~--~~Ll~-~ga~  185 (328)
                      .+|+||||+|+..++.+  ++|++ .|+.
T Consensus       217 ~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~  245 (285)
T 1wdy_A          217 ERGKTPLILAVEKKHLGLVQRLLEQEHIE  245 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHSSSCC
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhccCCC
Confidence            99999999999999988  88888 7773

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=2.6e-29  Score=234.06  Aligned_cols=163  Identities=29%  Similarity=0.406  Sum_probs=97.7

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCH
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTP   92 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp   92 (328)
                      .++..+.+|.||||+|+..|+.+++++|++++.++ +..|..|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||
T Consensus         6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~   83 (437)
T 1n11_A            6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTP   83 (437)
T ss_dssp             ---------CCHHHHHHHHTCHHHHHHHHHTTCCS-CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCH
T ss_pred             CccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCH
Confidence            34556666666666666666666666666666665 556666666666666666666666666666666 6666666666


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhc
Q 046832           93 LHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK  172 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~  172 (328)
                      ||+|+..|+.+++++|++++++ ++..+..|+||||+|+++|+.+++++|++      .+.+.+..+.+|+||||+|+..
T Consensus        84 L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~~~~~~~~~~~g~t~L~~A~~~  156 (437)
T 1n11_A           84 LHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLE------KEASQACMTKKGFTPLHVAAKY  156 (437)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHH------TTCCSCCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHh------CCCCCcCCCCCCCCHHHHHHHc
Confidence            6666666666666666666665 55566666666666666666666666665      3334444555555555555555


Q ss_pred             cchh--HHhhcCCC
Q 046832          173 KQRK--ELLLGHGT  184 (328)
Q Consensus       173 ~~~~--~~Ll~~ga  184 (328)
                      |+.+  ++|+++|+
T Consensus       157 g~~~~v~~Ll~~g~  170 (437)
T 1n11_A          157 GKVRVAELLLERDA  170 (437)
T ss_dssp             TCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHhCCC
Confidence            5555  55555554

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=5.5e-30  Score=230.05  Aligned_cols=155  Identities=18%  Similarity=0.215  Sum_probs=113.0

Q ss_pred             Hhh-ccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCC---HHHHHHHHHcCccccccCCCCC
Q 046832           14 VKL-KALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGH---TGVVRELLKVEQKLCHQQGPEK   89 (328)
Q Consensus        14 ~~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~---~~iv~~Ll~~~~~~~~~~~~~g   89 (328)
                      ++. +|..|.||||+|+..|+.+++++|+++|.++ +.+|.+|+||||+|+..|+   .++++.|++.+....+.+|.+|
T Consensus       123 vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g  201 (327)
T 1sw6_A          123 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN  201 (327)
T ss_dssp             SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTC
T ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCC
Confidence            345 7899999999999999999999999999988 8899999999999999998   7888888888733338899999


Q ss_pred             CCHHHHHHH----cCcHHHHHHHHHh--------------------CCcccccccCCCCCHHHHHHHcCChhhHHHHHHh
Q 046832           90 NTPLHCAAI----KGKVHVLSEMLSA--------------------CPECIEDVTIQHDTALHLAIKNNQFEAITVLVNW  145 (328)
Q Consensus        90 ~tpLh~Aa~----~g~~~~v~~Ll~~--------------------~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~  145 (328)
                      .||||+|+.    .|+.++++.|++.                    +.+ ++..+..|+||||.|+.      +++|++.
T Consensus       202 ~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~Ll~~  274 (327)
T 1sw6_A          202 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK-PNDKNGERKDSILENLD------LKWIIAN  274 (327)
T ss_dssp             CCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHH
T ss_pred             CCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC-cccccccCCChhHHHHH------HHHHHHh
Confidence            999999999    8999999999887                    333 45555556666665553      5555541


Q ss_pred             hhcCccccccccccCCCCchhhHHhhccchh--HHhhcCCC
Q 046832          146 IRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGT  184 (328)
Q Consensus       146 ~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga  184 (328)
                              ++|.+|.+|+||||+|+..|+.+  ++|+++|+
T Consensus       275 --------~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Ga  307 (327)
T 1sw6_A          275 --------MLNAQDSNGDTCLNIAARLGNISIVDALLDYGA  307 (327)
T ss_dssp             --------TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC
T ss_pred             --------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence                    35566666666666666666666  66666666

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=6.1e-30  Score=221.42  Aligned_cols=160  Identities=18%  Similarity=0.201  Sum_probs=139.3

Q ss_pred             CCChHHHHHHHcCCHH----HHHHHHhcCCCcccc----cCCCCCcHHHHHHHC---CCHHHHHHHHHcCccccc-----
Q 046832           20 RKGNPLHVASAYGHVD----FVKEIINVRPDLAHE----VNQDGFSPMHIASSI---GHTGVVRELLKVEQKLCH-----   83 (328)
Q Consensus        20 ~g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~----~d~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~~-----   83 (328)
                      .|+||||.|++.|+.+    ++++|++.+.++ +.    .|.+|+||||+|+..   |+.+++++|++.|++...     
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i-~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYL-TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            3889999999999997    667777789888 55    899999999999999   999999999999987621     


Q ss_pred             -----cCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCC-------------CCCHHHHHHHcCChhhHHHHHHh
Q 046832           84 -----QQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQ-------------HDTALHLAIKNNQFEAITVLVNW  145 (328)
Q Consensus        84 -----~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~-------------g~t~Lh~A~~~~~~~~~~~Ll~~  145 (328)
                           .+|..|.||||+|+..|+.+++++|++.+++ ++..+..             |+||||+|+.+|+.+++++|++.
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  158 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN  158 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                 2347899999999999999999999999988 7777776             99999999999999999999972


Q ss_pred             hhcCccccccccccCCCCchhhHHhh--ccchh---------HHhhcCCC
Q 046832          146 IRGMKREEIFNMKDEQGNTVLHLATR--KKQRK---------ELLLGHGT  184 (328)
Q Consensus       146 ~~~~~~~~~~~~~d~~G~T~Lh~A~~--~~~~~---------~~Ll~~ga  184 (328)
                      .   ..|+++|.+|.+|+||||+|+.  .++.+         ++|+++|+
T Consensus       159 ~---~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga  205 (256)
T 2etb_A          159 P---HQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA  205 (256)
T ss_dssp             S---SCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             c---ccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCC
Confidence            1   1578899999999999999998  55532         78999988

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.96  E-value=2.5e-29  Score=226.60  Aligned_cols=135  Identities=20%  Similarity=0.227  Sum_probs=124.3

Q ss_pred             HHHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCC
Q 046832           12 FLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNT   91 (328)
Q Consensus        12 ~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~t   91 (328)
                      ......+..|.|+||.|++.|+.+.++.|+...+...+..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.|
T Consensus        15 ~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t   93 (351)
T 3utm_A           15 AKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLV   93 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCC
T ss_pred             eeeeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCc
Confidence            3456678889999999999999999999998755555889999999999999999999999999999998 899999999


Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhc
Q 046832           92 PLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRG  148 (328)
Q Consensus        92 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~  148 (328)
                      |||+|+..|+.+++++|++.+++ ++..|..|+||||+|+.+|+.+++++|++.+.+
T Consensus        94 ~L~~A~~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  149 (351)
T 3utm_A           94 PLHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD  149 (351)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999999988 888999999999999999999999999996543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=8.1e-30  Score=222.85  Aligned_cols=168  Identities=18%  Similarity=0.191  Sum_probs=140.1

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhc----CCCccc---ccCCCCCcHHHHHHHC---CCHHHHHHHHHcCcccc-
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINV----RPDLAH---EVNQDGFSPMHIASSI---GHTGVVRELLKVEQKLC-   82 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~----~~~~~~---~~d~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~-   82 (328)
                      .+..|..|+||||.|++.|+.++++.|++.    +.++..   ..|..|+||||+|+..   |+.+++++|+++|++.. 
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~   85 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS   85 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence            356789999999999999999999988873    444421   4588999999999987   99999999999987531 


Q ss_pred             -----cc----CCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccC--------------CCCCHHHHHHHcCChhhH
Q 046832           83 -----HQ----QGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTI--------------QHDTALHLAIKNNQFEAI  139 (328)
Q Consensus        83 -----~~----~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~--------------~g~t~Lh~A~~~~~~~~~  139 (328)
                           +.    +|..|.||||+|+..|+.+++++|++.+++ ++..+.              .|+||||+|+.+|+.+++
T Consensus        86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  164 (273)
T 2pnn_A           86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV  164 (273)
T ss_dssp             HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHH
T ss_pred             hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHHHHcCCHHHH
Confidence                 22    567899999999999999999999999988 777776              799999999999999999


Q ss_pred             HHHHHhhhcCccccccccccCCCCchhhHHhhccc---------hh--HHhhcCCCC
Q 046832          140 TVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQ---------RK--ELLLGHGTY  185 (328)
Q Consensus       140 ~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~---------~~--~~Ll~~ga~  185 (328)
                      ++|++.+   ..|+++|.+|.+|+||||+|+..++         .+  ++|+++|+.
T Consensus       165 ~~Ll~~~---~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~  218 (273)
T 2pnn_A          165 KFLLQNS---WQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK  218 (273)
T ss_dssp             HHHHHCS---SCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcc---cCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh
Confidence            9999721   0478899999999999999999876         34  789999883

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=2.6e-29  Score=229.65  Aligned_cols=163  Identities=15%  Similarity=0.229  Sum_probs=150.5

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcC---CCcccccCCCCCcHHHHHHHCC---CHHHHHHHHHcCcccccc---
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVR---PDLAHEVNQDGFSPMHIASSIG---HTGVVRELLKVEQKLCHQ---   84 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~---~~~~~~~d~~g~tpLh~Aa~~g---~~~iv~~Ll~~~~~~~~~---   84 (328)
                      ++.+|..|.||||+|+..|+.+++++|++.+   .++ +..|.+|.||||+|+..|   +.+++++|+++|+++ +.   
T Consensus       192 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~-~~~~~  269 (373)
T 2fo1_E          192 PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV-DYDGA  269 (373)
T ss_dssp             SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCS-SCCSG
T ss_pred             CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCc-ccccc
Confidence            4678899999999999999999999999987   455 788999999999999998   899999999999987 43   


Q ss_pred             -----CCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCcccccccccc
Q 046832           85 -----QGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKD  159 (328)
Q Consensus        85 -----~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d  159 (328)
                           +|..|.||||+|+..|+.+++++|++.++..++..|..|+||||+|+++|+.+++++|++      .|++++.+|
T Consensus       270 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~------~gad~~~~d  343 (373)
T 2fo1_E          270 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ------QGASVEAVD  343 (373)
T ss_dssp             GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH------TTCCSSCCC
T ss_pred             cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCccCCC
Confidence                 677999999999999999999999999855599999999999999999999999999998      688899999


Q ss_pred             CCCCchhhHHhhccchh--HHhhcCCC
Q 046832          160 EQGNTVLHLATRKKQRK--ELLLGHGT  184 (328)
Q Consensus       160 ~~G~T~Lh~A~~~~~~~--~~Ll~~ga  184 (328)
                      .+|+||||+|+..++.+  ++|+++|+
T Consensus       344 ~~g~t~l~~A~~~g~~~iv~~Ll~~~a  370 (373)
T 2fo1_E          344 ATDHTARQLAQANNHHNIVDIFDRCRP  370 (373)
T ss_dssp             SSSCCHHHHHHHTTCHHHHHHHHTTC-
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence            99999999999999999  99999987

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=2.6e-29  Score=201.31  Aligned_cols=146  Identities=17%  Similarity=0.136  Sum_probs=119.0

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCC-H
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNT-P   92 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~t-p   92 (328)
                      .+..+..|.||||+|+..|+.+++++|++++.++ +..|..|+||||+|+ .|+.+++++|+++|+++ +.+|..|.| |
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttp   81 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRP   81 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCH
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHH
Confidence            4567889999999999999999999999999887 888999999999985 99999999999999998 899999999 9


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHH
Q 046832           93 LHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLA  169 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A  169 (328)
                      ||+|+..|+.+++++|++++++ ++..|..|+||||+|+.+|+.+++++|++      .|++++.+|..|+||.+-+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA------AAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS------CC-----------------
T ss_pred             HHHHHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHH------cCCCCCccCcCcCcccccC
Confidence            9999999999999999999988 88999999999999999999999999997      7889999999999998744

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=8.9e-29  Score=201.14  Aligned_cols=143  Identities=21%  Similarity=0.194  Sum_probs=129.2

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHH
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPL   93 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL   93 (328)
                      ++.+|..|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.|||
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L  106 (172)
T 3v30_A           29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPL  106 (172)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHH
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHH
Confidence            5778999999999999999999999999999988 888999999999999999999999999999998 89999999999


Q ss_pred             HHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCch
Q 046832           94 HCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTV  165 (328)
Q Consensus        94 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~  165 (328)
                      |+|+..|+.+++++|++.+++ ++..|..|+||||+|+++|+.+++++|++      .+.++..++..|.||
T Consensus       107 ~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~------~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          107 LYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIEN------HILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH------HHHHHSCC-------
T ss_pred             HHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHhCcHHHHHHHHH------HHHHHhcccCCCCCC
Confidence            999999999999999999988 88899999999999999999999999998      566677888888887

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.96  E-value=3.9e-29  Score=221.01  Aligned_cols=166  Identities=22%  Similarity=0.238  Sum_probs=146.3

Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHH
Q 046832           18 ALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAA   97 (328)
Q Consensus        18 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa   97 (328)
                      +.+|.||||.||..|+.++++.|++.+.++ +..|.+|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~  114 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAA  114 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHH
Confidence            446789999999999999999999999987 889999999999999999999999999999998 899999999999999


Q ss_pred             HcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCc---------------------cccccc
Q 046832           98 IKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMK---------------------REEIFN  156 (328)
Q Consensus        98 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~---------------------~~~~~~  156 (328)
                      ..|+.+++++|++.+++ ++..|..|.||||+|+..++.++++.++.......                     ......
T Consensus       115 ~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  193 (299)
T 1s70_B          115 SCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV  193 (299)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             HcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchh
Confidence            99999999999999988 88899999999999999999999998876421100                     011123


Q ss_pred             cccCCCCchhhHHhhccchh--HHhhcCCCCC
Q 046832          157 MKDEQGNTVLHLATRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       157 ~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~  186 (328)
                      ..|..|+||||+|+..|+.+  ++|+++|++.
T Consensus       194 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~  225 (299)
T 1s70_B          194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDV  225 (299)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT
T ss_pred             hhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCC
Confidence            36788999999999999999  9999999843

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=2.1e-29  Score=216.17  Aligned_cols=159  Identities=14%  Similarity=0.068  Sum_probs=116.2

Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHH
Q 046832           18 ALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAA   97 (328)
Q Consensus        18 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa   97 (328)
                      +..|.||||.|++.|+.+.++.|+++|.++ + .+..|.||||.|+..|+.+++++|++.|+++ +.+|.+|.||||+|+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV-K-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAV   78 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCc-c-cCchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence            457999999999999999999999999887 3 3478899999999999999999999999988 899999999999999


Q ss_pred             HcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCC-chhhHH--hhccc
Q 046832           98 IKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGN-TVLHLA--TRKKQ  174 (328)
Q Consensus        98 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~-T~Lh~A--~~~~~  174 (328)
                      ..|+.+++++|++.+++ ++..|..|+||||+|+.+|+.+++++|++      .|++++.+|.+|. ||||+|  +..|+
T Consensus        79 ~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~~~~t~l~~a~~~~~g~  151 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVE------SGAAVFAMTYSDMQTAADKCEEMEEGY  151 (239)
T ss_dssp             HHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCSSSCCCHHHHCCSSSTTC
T ss_pred             HcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCcceecCCCCcchHHHHHHhhhcc
Confidence            99999999999999988 89999999999999999999999999998      6888999998887 999999  67777


Q ss_pred             hh--HHhhcCCCCC
Q 046832          175 RK--ELLLGHGTYS  186 (328)
Q Consensus       175 ~~--~~Ll~~ga~~  186 (328)
                      .+  ++|+++|+..
T Consensus       152 ~~~~~~Ll~~~a~~  165 (239)
T 1ycs_B          152 TQCSQFLYGVQEKM  165 (239)
T ss_dssp             CCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhcc
Confidence            77  9999998844

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=4.2e-28  Score=206.93  Aligned_cols=166  Identities=17%  Similarity=0.240  Sum_probs=152.1

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHH
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPL   93 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL   93 (328)
                      ++..|..|.||||.|++.|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|++++++.....+..|.|||
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L   80 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL   80 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHH
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChh
Confidence            3456889999999999999999999999999887 888999999999999999999999999999998666777799999


Q ss_pred             HHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhcc
Q 046832           94 HCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKK  173 (328)
Q Consensus        94 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~  173 (328)
                      |+|+..|+.+++++|++.+++ ++..+..|+||||+|+.+|+.+++++|++      .+.+++.+|.+|+||||+|+..+
T Consensus        81 ~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~------~~~~~~~~~~~g~t~l~~a~~~~  153 (240)
T 3eu9_A           81 HWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIA------KGQDVDMMDQNGMTPLMWAAYRT  153 (240)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHh------cCCCccccCCCCCcHHHHHHHhC
Confidence            999999999999999999888 78889999999999999999999999998      67789999999999999999777


Q ss_pred             ch-h--HHhhcCCCCCC
Q 046832          174 QR-K--ELLLGHGTYSS  187 (328)
Q Consensus       174 ~~-~--~~Ll~~ga~~~  187 (328)
                      +. +  ++|++.|+...
T Consensus       154 ~~~~~~~~L~~~~~~~~  170 (240)
T 3eu9_A          154 HSVDPTRLLLTFNVSVN  170 (240)
T ss_dssp             CSSTTHHHHHHTTCCTT
T ss_pred             ChHHHHHHHHhcCCCcc
Confidence            63 3  89999998543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.96  E-value=6.8e-28  Score=216.96  Aligned_cols=168  Identities=20%  Similarity=0.239  Sum_probs=148.8

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcc---------cccCCCCCcHHHHHHHCCCHHHHHHHHH-cCcccc
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLA---------HEVNQDGFSPMHIASSIGHTGVVRELLK-VEQKLC   82 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~---------~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~-~~~~~~   82 (328)
                      .++.+|..|.||||+|+..|+.++++.|++++.++.         ...+..|.||||+|+..|+.+++++|++ .|+++ 
T Consensus       117 ~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-  195 (337)
T 4g8k_A          117 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-  195 (337)
T ss_dssp             CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-
T ss_pred             hhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-
Confidence            356789999999999999999999999999987652         2345679999999999999999999996 58887 


Q ss_pred             ccCCCCCCCHHHHHHHcCc----HHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccc
Q 046832           83 HQQGPEKNTPLHCAAIKGK----VHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMK  158 (328)
Q Consensus        83 ~~~~~~g~tpLh~Aa~~g~----~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  158 (328)
                      +.+|..|.||+|.++..+.    .+++++|+++|++ ++.+|..|+||||+|++.|+.++++.|++.     .+.++|.+
T Consensus       196 n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad-~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~-----~~~~vn~~  269 (337)
T 4g8k_A          196 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQ-----EHIEINDT  269 (337)
T ss_dssp             TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHTS-----TTCCTTCB
T ss_pred             CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhhhhHHHHHHHHh-----cCCcccCc
Confidence            8999999999998887654    4688899999988 889999999999999999999999999973     57889999


Q ss_pred             cCCCCchhhHHhhccchh--HHhhcCCCCCC
Q 046832          159 DEQGNTVLHLATRKKQRK--ELLLGHGTYSS  187 (328)
Q Consensus       159 d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~~  187 (328)
                      |.+|+||||+|+..|+.+  ++|+++|++.+
T Consensus       270 d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n  300 (337)
T 4g8k_A          270 DSDGKTALLLAVELKLKKIAELLCKRGASTD  300 (337)
T ss_dssp             CTTSCBHHHHHHHTTCHHHHHHHHTTSCSST
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            999999999999999999  99999999654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=1.6e-28  Score=192.07  Aligned_cols=129  Identities=19%  Similarity=0.232  Sum_probs=115.2

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCC-CCCH
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPE-KNTP   92 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~-g~tp   92 (328)
                      ++.+|..|.||||+|+..|+.+++++|++++.++ +.+|..|+||||+|+. |+.+++++|+++|+++ +.+|.. |.||
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~   81 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRP   81 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCH
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCH
Confidence            5678889999999999999999999999998887 7888899999999999 9999999999999888 888888 8999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhh
Q 046832           93 LHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWI  146 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~  146 (328)
                      ||+|+..|+.+++++|++.+++ ++..|..|+||||+|+++++.+++++|+++|
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999999999999998887 7888889999999999999999999998854

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=8.9e-29  Score=214.51  Aligned_cols=163  Identities=20%  Similarity=0.196  Sum_probs=137.8

Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHh----cCCCcccccC----CCCCcHHHHHH---HCCCHHHHHHHHHcCccc-----
Q 046832           18 ALRKGNPLHVASAYGHVDFVKEIIN----VRPDLAHEVN----QDGFSPMHIAS---SIGHTGVVRELLKVEQKL-----   81 (328)
Q Consensus        18 ~~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~d----~~g~tpLh~Aa---~~g~~~iv~~Ll~~~~~~-----   81 (328)
                      +..|+|+||.|++.|+.+.++.|++    .+.++ +..+    .+|+||||+|+   ..|+.+++++|++.|++.     
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRL-TDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-chhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            5678999999999999996555554    88777 4444    77999999999   779999999999988652     


Q ss_pred             -----cccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCccccccc--------------CCCCCHHHHHHHcCChhhHHHH
Q 046832           82 -----CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVT--------------IQHDTALHLAIKNNQFEAITVL  142 (328)
Q Consensus        82 -----~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~--------------~~g~t~Lh~A~~~~~~~~~~~L  142 (328)
                           ...+|..|.||||+|+..|+.+++++|++.+++ ++..+              ..|+||||+|+..|+.+++++|
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  159 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL  159 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred             hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence                 134455899999999999999999999999988 77777              5899999999999999999999


Q ss_pred             HHhhhcCccccccccccCCCCchhhHHhhccc---------hh--HHhhcCCCC
Q 046832          143 VNWIRGMKREEIFNMKDEQGNTVLHLATRKKQ---------RK--ELLLGHGTY  185 (328)
Q Consensus       143 l~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~---------~~--~~Ll~~ga~  185 (328)
                      ++.+   ..|+++|.+|.+|+||||+|+..++         .+  ++|+++|+.
T Consensus       160 l~~~---~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~  210 (260)
T 3jxi_A          160 TENG---HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK  210 (260)
T ss_dssp             HHCS---SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hhcc---ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcc
Confidence            9721   0478899999999999999998766         34  889999883

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.95  E-value=1.3e-27  Score=215.06  Aligned_cols=159  Identities=21%  Similarity=0.244  Sum_probs=140.4

Q ss_pred             hhccCCCChHHHHHHHcCCHHHHHHHHhc-CCCcccccCCCCCcHHHHHHHCCC----HHHHHHHHHcCccccccCCCCC
Q 046832           15 KLKALRKGNPLHVASAYGHVDFVKEIINV-RPDLAHEVNQDGFSPMHIASSIGH----TGVVRELLKVEQKLCHQQGPEK   89 (328)
Q Consensus        15 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~Aa~~g~----~~iv~~Ll~~~~~~~~~~~~~g   89 (328)
                      +..+..|.||||+|++.|+.+++++|+++ +.++ +.+|..|.||||.++..++    .+++++|+++|+++ +.+|.+|
T Consensus       162 ~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g  239 (337)
T 4g8k_A          162 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERG  239 (337)
T ss_dssp             --CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGG
T ss_pred             ccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCC
Confidence            34567899999999999999999999975 6666 8899999999999886544    46889999999998 8999999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHH
Q 046832           90 NTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLA  169 (328)
Q Consensus        90 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A  169 (328)
                      .||||+|+..|+.++++.|++.....++.+|.+|+||||+|+++|+.+++++|++      .|+++|     +.||||+|
T Consensus       240 ~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~------~GAd~n-----~~~~L~~A  308 (337)
T 4g8k_A          240 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK------RGASTD-----CGDLVMTA  308 (337)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHT------TSCSST-----TCCHHHHH
T ss_pred             CCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCC-----CCCHHHHH
Confidence            9999999999999999999997655589999999999999999999999999998      566555     45699999


Q ss_pred             hhccchh--HHhhcCCCCC
Q 046832          170 TRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       170 ~~~~~~~--~~Ll~~ga~~  186 (328)
                      +..++.+  ++|+++||..
T Consensus       309 ~~~~~~~iv~~Ll~~GA~~  327 (337)
T 4g8k_A          309 RRNYDHSLVKVLLSHGAKE  327 (337)
T ss_dssp             HHTTCHHHHHHHHHTTCCC
T ss_pred             HHcCCHHHHHHHHHCcCCC
Confidence            9999998  9999999954

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=6.2e-28  Score=188.70  Aligned_cols=130  Identities=18%  Similarity=0.234  Sum_probs=122.9

Q ss_pred             CCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCC-C
Q 046832           45 PDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQ-H  123 (328)
Q Consensus        45 ~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~-g  123 (328)
                      +++ +..|.+|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+. |+.+++++|++.+++ ++..|.. |
T Consensus         3 ~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g   78 (136)
T 1d9s_A            3 PGI-HMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATL   78 (136)
T ss_dssp             CCC-SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTT
T ss_pred             CCc-cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCC
Confidence            444 788999999999999999999999999999998 8999999999999999 999999999999998 8889999 9


Q ss_pred             CCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcCCC
Q 046832          124 DTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGT  184 (328)
Q Consensus       124 ~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga  184 (328)
                      +||||+|+..|+.+++++|++      .|++++.+|.+|+||||+|+..++.+  ++|+++|+
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           79 TRPVHDAAREGFLDTLVVLHR------AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHH------TCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             CCHHHHHHHcCCHHHHHHHHH------cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999999999998      67889999999999999999999988  99999887

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.95  E-value=5e-28  Score=217.27  Aligned_cols=153  Identities=17%  Similarity=0.141  Sum_probs=121.5

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccc-cCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCc--
Q 046832           25 LHVASAYGHVDFVKEIINVRPDLAHE-VNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGK--  101 (328)
Q Consensus        25 Lh~A~~~g~~~~v~~Ll~~~~~~~~~-~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~--  101 (328)
                      +|.|+..+..++++.|++.+.++ +. +|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+  
T Consensus       101 ~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~  178 (327)
T 1sw6_A          101 QHVSFDSLLQEVNDAFPNTQLNL-NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNY  178 (327)
T ss_dssp             ---CHHHHHHHHHHHCTTSCCCS-CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHH
T ss_pred             hHHHHHhhHHHHHHHHHhcCCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccc
Confidence            47788888889999999999998 66 8999999999999999999999999999999 8999999999999999999  


Q ss_pred             -HHHHHHHHHhCCcccccccCCCCCHHHHHHH----cCChhhHHHHHHhhhcC--------------ccccccccccCCC
Q 046832          102 -VHVLSEMLSACPECIEDVTIQHDTALHLAIK----NNQFEAITVLVNWIRGM--------------KREEIFNMKDEQG  162 (328)
Q Consensus       102 -~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~----~~~~~~~~~Ll~~~~~~--------------~~~~~~~~~d~~G  162 (328)
                       .++++.|++.+...++..|..|+||||+|++    .|+.+++++|++.+...              ..+++++.+|.+|
T Consensus       179 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g  258 (327)
T 1sw6_A          179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER  258 (327)
T ss_dssp             HTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred             cHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccC
Confidence             7888888888755689999999999999999    89999999999864321              1278899999999


Q ss_pred             CchhhHHhhccchhHHhhcCC
Q 046832          163 NTVLHLATRKKQRKELLLGHG  183 (328)
Q Consensus       163 ~T~Lh~A~~~~~~~~~Ll~~g  183 (328)
                      +||||.|+.    -++|++++
T Consensus       259 ~t~L~~a~~----~~~Ll~~~  275 (327)
T 1sw6_A          259 KDSILENLD----LKWIIANM  275 (327)
T ss_dssp             -CHHHHHCS----HHHHHHHT
T ss_pred             CChhHHHHH----HHHHHHhC
Confidence            999999986    36677664

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=3.9e-28  Score=212.81  Aligned_cols=162  Identities=19%  Similarity=0.231  Sum_probs=146.2

Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHHhcCCC-cccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHH
Q 046832           17 KALRKGNPLHVASAYGHVDFVKEIINVRPD-LAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHC   95 (328)
Q Consensus        17 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~-~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~   95 (328)
                      .+..+.+++|.|+..|+.+.++.+++.+.+ ..+..|.+|+||||+|+..|+.+++++|++.|+...+.+|..|.||||+
T Consensus        72 ~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~  151 (276)
T 4hbd_A           72 LRLACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIML  151 (276)
T ss_dssp             HHHHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH
T ss_pred             HHHHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHH
Confidence            344567889999999999999999987655 2478899999999999999999999999999984449999999999999


Q ss_pred             HH-----HcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHh
Q 046832           96 AA-----IKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLAT  170 (328)
Q Consensus        96 Aa-----~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~  170 (328)
                      |+     ..++.++++.|++.+.. .+..+..|+||||+|+.+|+.+++++|++      .|+++|.+|.+|+||||+|+
T Consensus       152 a~~~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~------~gad~n~~d~~G~TpLh~A~  224 (276)
T 4hbd_A          152 TALATLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLA------CEADVNVQDDDGSTALMCAC  224 (276)
T ss_dssp             GGGCCCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHh------CCCCCCCCCCCCCCHHHHHH
Confidence            99     67899999999999976 67788899999999999999999999998      68889999999999999999


Q ss_pred             hccchh--HHhhc-CCCC
Q 046832          171 RKKQRK--ELLLG-HGTY  185 (328)
Q Consensus       171 ~~~~~~--~~Ll~-~ga~  185 (328)
                      ..|+.+  ++|++ .|++
T Consensus       225 ~~g~~~iv~~Ll~~~gad  242 (276)
T 4hbd_A          225 EHGHKEIAGLLLAVPSCD  242 (276)
T ss_dssp             HHTCHHHHHHHHTSTTCC
T ss_pred             HCCCHHHHHHHHhcCCCC
Confidence            999999  99998 7884

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=3.4e-27  Score=189.71  Aligned_cols=130  Identities=20%  Similarity=0.269  Sum_probs=123.5

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHH
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPL   93 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL   93 (328)
                      ++.+|..|.||||+|+. |+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.|||
T Consensus        31 ~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L  107 (162)
T 1ihb_A           31 VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPL  107 (162)
T ss_dssp             TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHH
Confidence            45678999999999999 9999999999999888 888999999999999999999999999999998 89999999999


Q ss_pred             HHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhh
Q 046832           94 HCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWI  146 (328)
Q Consensus        94 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~  146 (328)
                      |+|+..|+.+++++|++.+++.++..|..|+||||+|+++|+.+++++|+++|
T Consensus       108 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A          108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence            99999999999999999999877899999999999999999999999999853

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=7e-28  Score=198.70  Aligned_cols=155  Identities=10%  Similarity=0.026  Sum_probs=135.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCH----HHHHHHHHcCccccccCCCCCCCHHHH
Q 046832           20 RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHT----GVVRELLKVEQKLCHQQGPEKNTPLHC   95 (328)
Q Consensus        20 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~----~iv~~Ll~~~~~~~~~~~~~g~tpLh~   95 (328)
                      ++.++||.|++.|+.+.++.+++.+.+.  ..|..|+||||+|+..|+.    +++++|+++|+++ +.+|.+|.||||+
T Consensus         5 ~~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~   81 (186)
T 3t8k_A            5 SEYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFP   81 (186)
T ss_dssp             HHCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHH
T ss_pred             ccccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHH
Confidence            3578999999999999999999987543  2237899999999999985    5999999999999 9999999999999


Q ss_pred             HHHcCc------HHHHHHHHHhCCcccccccCCCC-CHHHHHHHcCC-----hhhHHHHHHhhhcCccccccccccCCCC
Q 046832           96 AAIKGK------VHVLSEMLSACPECIEDVTIQHD-TALHLAIKNNQ-----FEAITVLVNWIRGMKREEIFNMKDEQGN  163 (328)
Q Consensus        96 Aa~~g~------~~~v~~Ll~~~~~~~~~~~~~g~-t~Lh~A~~~~~-----~~~~~~Ll~~~~~~~~~~~~~~~d~~G~  163 (328)
                      |+..|+      .++++.|+++|++ ++.+|..|+ ||||+|+..+.     .+++++|++     ..|++++.+|.+|+
T Consensus        82 a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~-----~~gad~~~~d~~G~  155 (186)
T 3t8k_A           82 LFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS-----QSGLQLLIKDKWGL  155 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHT-----STTCCTTCCCTTSC
T ss_pred             HHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHH-----hcCCCCcccCCCCC
Confidence            999987      6889999999998 899999999 99999999543     468999986     26888999999999


Q ss_pred             chhhHHhhccchh--HHhhcCC
Q 046832          164 TVLHLATRKKQRK--ELLLGHG  183 (328)
Q Consensus       164 T~Lh~A~~~~~~~--~~Ll~~g  183 (328)
                      ||||+|+..++.+  ++|.+..
T Consensus       156 TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          156 TALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             CHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999888  7776443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=5.5e-27  Score=183.28  Aligned_cols=126  Identities=23%  Similarity=0.325  Sum_probs=113.9

Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHH
Q 046832           17 KALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCA   96 (328)
Q Consensus        17 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A   96 (328)
                      ....|.||||+|+..|+.++++.|++.+.++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A   87 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLA   87 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHH
Confidence            4566789999999999999999999999887 788999999999999999999999999999988 88899999999999


Q ss_pred             HHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHh
Q 046832           97 AIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNW  145 (328)
Q Consensus        97 a~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~  145 (328)
                      +..|+.+++++|++.+++ ++..|..|+||||+|+++|+.+++++|+++
T Consensus        88 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           88 AFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             HHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            999999999999999887 788889999999999999999999999873

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=1.8e-26  Score=177.13  Aligned_cols=124  Identities=30%  Similarity=0.516  Sum_probs=115.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHc
Q 046832           20 RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIK   99 (328)
Q Consensus        20 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~   99 (328)
                      +|+||||.|++.|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHc
Confidence            5899999999999999999999999887 788999999999999999999999999999988 88999999999999999


Q ss_pred             CcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhh
Q 046832          100 GKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWI  146 (328)
Q Consensus       100 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~  146 (328)
                      |+.+++++|++.+++ ++..|..|+||||+|++.++.+++++|+++|
T Consensus        79 ~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           79 GHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            999999999999887 7888999999999999999999999999853

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=2.6e-27  Score=193.88  Aligned_cols=141  Identities=18%  Similarity=0.200  Sum_probs=131.1

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCH
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTP   92 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp   92 (328)
                      +++.+|..|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||
T Consensus        31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~  108 (179)
T 3f6q_A           31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVP  108 (179)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred             cccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCH
Confidence            35678999999999999999999999999999988 888999999999999999999999999999998 8999999999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCC
Q 046832           93 LHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQG  162 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G  162 (328)
                      ||+|+..|+.+++++|++.+++ ++..|..|+||||+|+..++.+++++|++      .|++++..+.++
T Consensus       109 L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~L~~------~g~~~~~~~~~~  171 (179)
T 3f6q_A          109 LHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELLRERAEK------MGQNLNRIPYKD  171 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHHHHHHHHHHHH------TTCCCSCBCCCC
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHHHHHHHHHHHH------hhcCcccCCccc
Confidence            9999999999999999999988 88999999999999999999999999998      566666666554

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=2.3e-26  Score=186.55  Aligned_cols=128  Identities=26%  Similarity=0.453  Sum_probs=122.7

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHH
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPL   93 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL   93 (328)
                      ++.+|..|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.|||
T Consensus        40 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L  117 (169)
T 2y1l_E           40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPL  117 (169)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHH
Confidence            4678899999999999999999999999999888 888999999999999999999999999999998 89999999999


Q ss_pred             HHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHH
Q 046832           94 HCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVN  144 (328)
Q Consensus        94 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~  144 (328)
                      |+|+..|+.+++++|++++++ ++..|..|+||||+|+++|+.+++++|++
T Consensus       118 ~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E          118 HLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            999999999999999999988 88899999999999999999999999987

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=2.7e-26  Score=189.91  Aligned_cols=131  Identities=16%  Similarity=0.192  Sum_probs=124.9

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCH
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTP   92 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp   92 (328)
                      .++.+|..|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||
T Consensus        60 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~  137 (192)
T 2rfm_A           60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETP  137 (192)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCH
T ss_pred             ccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCH
Confidence            46778899999999999999999999999999988 888999999999999999999999999999998 8999999999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhh
Q 046832           93 LHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWI  146 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~  146 (328)
                      ||+|+..|+.+++++|++.+++ ++..|..|+||||+|+.+|+.+++++|++++
T Consensus       138 L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          138 LIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            9999999999999999999988 8889999999999999999999999999853

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=3.4e-26  Score=184.91  Aligned_cols=132  Identities=19%  Similarity=0.184  Sum_probs=125.2

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCH
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTP   92 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp   92 (328)
                      .++.+|..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||
T Consensus        28 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~  105 (167)
T 3v31_A           28 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTP  105 (167)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCH
T ss_pred             CcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC-CcCCCCCCCH
Confidence            35778999999999999999999999999999887 888999999999999999999999999999998 8999999999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhh
Q 046832           93 LHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIR  147 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~  147 (328)
                      ||+|+..|+.+++++|++.+++ ++..|..|+||||+|++.|+.+++++|++++.
T Consensus       106 L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (167)
T 3v31_A          106 LLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQVIESHLL  159 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence            9999999999999999999988 78899999999999999999999999998654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=3.8e-27  Score=202.07  Aligned_cols=164  Identities=21%  Similarity=0.229  Sum_probs=141.4

Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHH
Q 046832           18 ALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAA   97 (328)
Q Consensus        18 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa   97 (328)
                      +..|.||||.|+..|+.++++.|++.++++ +.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+
T Consensus        34 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~  111 (239)
T 1ycs_B           34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAA  111 (239)
T ss_dssp             ---CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHH
T ss_pred             CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHH
Confidence            467899999999999999999999999987 889999999999999999999999999999998 999999999999999


Q ss_pred             HcCcHHHHHHHHHhCCcccccccCCCC-CHHHHH--HHcCChhhHHHHHHhhhcCc---cccccccccCCCCchhhHHhh
Q 046832           98 IKGKVHVLSEMLSACPECIEDVTIQHD-TALHLA--IKNNQFEAITVLVNWIRGMK---REEIFNMKDEQGNTVLHLATR  171 (328)
Q Consensus        98 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~-t~Lh~A--~~~~~~~~~~~Ll~~~~~~~---~~~~~~~~d~~G~T~Lh~A~~  171 (328)
                      ..|+.+++++|++++++ ++..+..|. ||||+|  +..|+.+++++|++.+.+..   .+......|..|.++++++..
T Consensus       112 ~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~  190 (239)
T 1ycs_B          112 SCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMK  190 (239)
T ss_dssp             HTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBC
T ss_pred             HcCCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCccccc
Confidence            99999999999999998 777777776 999999  78899999999999665432   122233448889999999998


Q ss_pred             ccchhHHhhcCCC
Q 046832          172 KKQRKELLLGHGT  184 (328)
Q Consensus       172 ~~~~~~~Ll~~ga  184 (328)
                      .|..-+.+.+.+.
T Consensus       191 ~G~~i~vl~~~~~  203 (239)
T 1ycs_B          191 EGDCMTIIHREDE  203 (239)
T ss_dssp             SSCEEEECCCCTT
T ss_pred             CCCEEEEEEecCC
Confidence            8876566665554

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=4.2e-26  Score=181.82  Aligned_cols=123  Identities=23%  Similarity=0.341  Sum_probs=118.2

Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHH
Q 046832           17 KALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCA   96 (328)
Q Consensus        17 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A   96 (328)
                      .|..|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A  107 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWA  107 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence            5778999999999999999999999999988 888999999999999999999999999999998 89999999999999


Q ss_pred             HHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHH
Q 046832           97 AIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVL  142 (328)
Q Consensus        97 a~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~L  142 (328)
                      +..|+.+++++|++.+++ ++..|..|+||||+|+++|+.+++++|
T Consensus       108 ~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          108 TEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            999999999999999988 888999999999999999999999987

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=5.1e-26  Score=181.71  Aligned_cols=127  Identities=17%  Similarity=0.250  Sum_probs=120.2

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCH
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTP   92 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp   92 (328)
                      .++.+|..|.||||+ +..|+.++++.|++.+.++ +.+|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||
T Consensus        28 ~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~  104 (156)
T 1bd8_A           28 HPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALP  104 (156)
T ss_dssp             CTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCH
T ss_pred             CccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcH
Confidence            445678999999999 9999999999999999988 889999999999999999999999999999998 8999999999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHH
Q 046832           93 LHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVN  144 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~  144 (328)
                      ||+|+..|+.+++++|++. ++ ++..|..|+||||+|++.|+.+++++|++
T Consensus       105 L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A          105 IHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            9999999999999999999 55 88899999999999999999999999986

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=5.2e-26  Score=183.46  Aligned_cols=126  Identities=28%  Similarity=0.366  Sum_probs=119.5

Q ss_pred             hhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHH
Q 046832           15 KLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLH   94 (328)
Q Consensus        15 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh   94 (328)
                      +.++..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||
T Consensus        36 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~  113 (165)
T 3twr_A           36 RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLH  113 (165)
T ss_dssp             CCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHH
T ss_pred             cccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHH
Confidence            356778899999999999999999999999988 889999999999999999999999999999998 899999999999


Q ss_pred             HHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHH
Q 046832           95 CAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVN  144 (328)
Q Consensus        95 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~  144 (328)
                      +|+..|+.+++++|++.+++ ++.+|..|+||||+|.+ ++.+++++|++
T Consensus       114 ~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~a~~-~~~~i~~~L~~  161 (165)
T 3twr_A          114 EAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD-GDTDIQDLLRG  161 (165)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTGGGSCT-TCHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CcccCCCCCChhHhHhc-CChHHHHHHhh
Confidence            99999999999999999988 88999999999999877 89999999987

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=1.2e-26  Score=185.69  Aligned_cols=128  Identities=17%  Similarity=0.169  Sum_probs=116.8

Q ss_pred             cccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCC-HH
Q 046832           49 HEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDT-AL  127 (328)
Q Consensus        49 ~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-~L  127 (328)
                      ...+..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+ .|+.+++++|++.+.+ ++..|..|+| ||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttpL   82 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPV   82 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHHH
Confidence            456788999999999999999999999999998 889999999999985 9999999999999987 8899999999 99


Q ss_pred             HHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcCCCC
Q 046832          128 HLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTY  185 (328)
Q Consensus       128 h~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~  185 (328)
                      |+|++.|+.+++++|++      .|++++.+|.+|+||||+|+..++.+  ++|+++|+.
T Consensus        83 ~~A~~~~~~~~v~~Ll~------~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~  136 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHR------AGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG  136 (156)
T ss_dssp             HHHHHHTCHHHHHHHHH------HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--
T ss_pred             HHHHHCCCHHHHHHHHH------cCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC
Confidence            99999999999999998      57889999999999999999999999  999999993

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=7.3e-26  Score=173.68  Aligned_cols=123  Identities=34%  Similarity=0.541  Sum_probs=117.5

Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHc
Q 046832           54 DGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKN  133 (328)
Q Consensus        54 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  133 (328)
                      +|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+.+ ++..|..|+||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHHHc
Confidence            5899999999999999999999999998 88999999999999999999999999999988 888999999999999999


Q ss_pred             CChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcCCC
Q 046832          134 NQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGT  184 (328)
Q Consensus       134 ~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga  184 (328)
                      ++.+++++|++      .|.+++.+|.+|+||||+|+..++.+  ++|+++|+
T Consensus        79 ~~~~~~~~Ll~------~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           79 GHLEVVKLLLE------AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             TCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             ChHHHHHHHHH------cCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            99999999998      67888999999999999999999998  99999997

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=3.5e-26  Score=178.72  Aligned_cols=125  Identities=22%  Similarity=0.247  Sum_probs=116.2

Q ss_pred             cCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 046832           51 VNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLA  130 (328)
Q Consensus        51 ~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A  130 (328)
                      ....|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.+++ ++..|..|+||||+|
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A   87 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLA   87 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHH
Confidence            4567899999999999999999999999998 88999999999999999999999999999888 888999999999999


Q ss_pred             HHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcCC
Q 046832          131 IKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG  183 (328)
Q Consensus       131 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~g  183 (328)
                      +..|+.+++++|++      .|++++.+|.+|+||||+|+..++.+  ++|+++|
T Consensus        88 ~~~~~~~~v~~Ll~------~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           88 AFIGHLEIAEVLLK------HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHcCCHHHHHHHHH------cCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999998      67889999999999999999999998  8888776

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=4e-26  Score=178.47  Aligned_cols=119  Identities=24%  Similarity=0.262  Sum_probs=79.2

Q ss_pred             ccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHH
Q 046832           50 EVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHL  129 (328)
Q Consensus        50 ~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  129 (328)
                      .+|.+|+||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.+.+ ++..|..|+||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHHHH
Confidence            34566666666666666666666666666665 66666666666666666666666666666665 56666666677777


Q ss_pred             HHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh
Q 046832          130 AIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK  176 (328)
Q Consensus       130 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~  176 (328)
                      |+++|+.+++++|++      .|++++.+|.+|+||||+|+..+..+
T Consensus        83 A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~tpl~~A~~~~~~~  123 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLS------YGASRNAVNIFGLRPVDYTDDESMKS  123 (137)
T ss_dssp             HHHTTCHHHHHHHHH------TTCCTTCCCTTSCCGGGGCCCHHHHH
T ss_pred             HHHcCCHHHHHHHHH------cCCCCCCCCCCCCCHHHHHhhccHHH
Confidence            777777777777766      45566667777777777776655554

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.93  E-value=7.5e-27  Score=200.92  Aligned_cols=141  Identities=20%  Similarity=0.217  Sum_probs=127.0

Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCC-CCCCCHHHH
Q 046832           17 KALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQG-PEKNTPLHC   95 (328)
Q Consensus        17 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpLh~   95 (328)
                      .+.+|.||||.|++.|+.++++.|++ +.++ +.+|.+|+||||+|+..|+.+++++|+++|+++ +.+| ..|.||||+
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~  117 (244)
T 3ui2_A           41 VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHM  117 (244)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHH
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHH
Confidence            34578999999999999999999999 7776 889999999999999999999999999999999 6676 889999999


Q ss_pred             HHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccch
Q 046832           96 AAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQR  175 (328)
Q Consensus        96 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~  175 (328)
                      |+..|+.+++++|++.+++ ++..|..|+||||+|++.+                       .+..+.||||+|+..|+.
T Consensus       118 A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~-----------------------~~~~~~~~l~~a~~~g~~  173 (244)
T 3ui2_A          118 AAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREIL-----------------------KTTPKGNPMQFGRRIGLE  173 (244)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHH-----------------------TTCCCSSHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHH-----------------------hccCCCCHHHHHHHcChH
Confidence            9999999999999999988 8899999999999998621                       235789999999999998


Q ss_pred             h--HHhhcCCC
Q 046832          176 K--ELLLGHGT  184 (328)
Q Consensus       176 ~--~~Ll~~ga  184 (328)
                      +  ++|++++.
T Consensus       174 ~iv~~L~~~~~  184 (244)
T 3ui2_A          174 KVINVLEGQVF  184 (244)
T ss_dssp             HHHHHHHHHHE
T ss_pred             HHHHHHHHhcc
Confidence            8  88877654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=2.1e-26  Score=180.05  Aligned_cols=126  Identities=24%  Similarity=0.323  Sum_probs=119.0

Q ss_pred             hccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHH
Q 046832           16 LKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHC   95 (328)
Q Consensus        16 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~   95 (328)
                      .+|.+|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHH
Confidence            57899999999999999999999999999888 889999999999999999999999999999998 8999999999999


Q ss_pred             HHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHH
Q 046832           96 AAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVN  144 (328)
Q Consensus        96 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~  144 (328)
                      |+..|+.+++++|++.+++ ++..|..|+||||+|+..+..+++++|.+
T Consensus        83 A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~l~~l~~  130 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEK  130 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred             HHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence            9999999999999999988 88999999999999999999999988875

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=8.3e-26  Score=185.71  Aligned_cols=139  Identities=19%  Similarity=0.229  Sum_probs=123.1

Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCC-CCCCCHHHH
Q 046832           17 KALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQG-PEKNTPLHC   95 (328)
Q Consensus        17 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpLh~   95 (328)
                      .+.+|.||||.|+..|+.++++.|++ +.++ +.+|.+|+||||+|+..|+.+++++|+++|+++ +.+| .+|.||||+
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~  116 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHH
Confidence            35688999999999999999999999 7776 889999999999999999999999999999998 6676 889999999


Q ss_pred             HHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccch
Q 046832           96 AAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQR  175 (328)
Q Consensus        96 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~  175 (328)
                      |+..|+.+++++|++.+++ ++.+|..|+||||+|++.++                       ...+.+||++|+..+..
T Consensus       117 A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~-----------------------~~~~~~~l~~a~~~~~~  172 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILK-----------------------TTPKGNPMQFGRRIGLE  172 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHH-----------------------TCCCCSHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhcc-----------------------CcccccHHHHHHHcCHH
Confidence            9999999999999999988 88899999999999987432                       24567999999999888


Q ss_pred             h--HHhhcC
Q 046832          176 K--ELLLGH  182 (328)
Q Consensus       176 ~--~~Ll~~  182 (328)
                      +  ++|.++
T Consensus       173 ~i~~~L~~~  181 (183)
T 3deo_A          173 KVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHh
Confidence            7  666543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.93  E-value=1.6e-25  Score=198.48  Aligned_cols=141  Identities=19%  Similarity=0.139  Sum_probs=122.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCcccc-----cCCCCCcHHHHHHHC---CCHHHHHHHHHcCccccccCCCCCCCH
Q 046832           21 KGNPLHVASAYGHVDFVKEIINVRPDLAHE-----VNQDGFSPMHIASSI---GHTGVVRELLKVEQKLCHQQGPEKNTP   92 (328)
Q Consensus        21 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-----~d~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~~~~g~tp   92 (328)
                      +.++||.|+..|+.+.++.|++.++++...     .|..|+||||+|+..   |+.+++++|+++|+++ +.+|.+|.||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~Tp  229 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTA  229 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCCH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCCH
Confidence            346799999999999999999999988332     688999999999997   8999999999999998 8999999999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhc
Q 046832           93 LHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK  172 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~  172 (328)
                      ||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..++.+++++|++.+      ++      .|+||||+|+..
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g------a~------~g~tpLh~A~~~  296 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQ------AG------TFAFPLHVDYSW  296 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH------HH------TTSSCCC-----
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc------CC------CCCChhHHHHhc
Confidence            9999999999999999999988 8999999999999999999999999999843      22      689999999998


Q ss_pred             cch
Q 046832          173 KQR  175 (328)
Q Consensus       173 ~~~  175 (328)
                      |+.
T Consensus       297 g~~  299 (301)
T 2b0o_E          297 VIS  299 (301)
T ss_dssp             ---
T ss_pred             CCc
Confidence            764

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=5.7e-26  Score=192.36  Aligned_cols=129  Identities=23%  Similarity=0.313  Sum_probs=104.2

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHc-CccccccCCCCCCCH
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKV-EQKLCHQQGPEKNTP   92 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tp   92 (328)
                      ++.++.+|.||||+|+..|+.++++.|++.+.++ +.+|..|+||||+|+..|+.+++++|++. |+++ +.+|.+|.||
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tp  143 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTA  143 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCH
T ss_pred             ccccccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCH
Confidence            4566778888888888888888888888888776 77788888888888888888888888887 7776 7888888888


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHh
Q 046832           93 LHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNW  145 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~  145 (328)
                      ||+|+..|+.+++++|++.+++ ++..|..|+||||+|+..++.++++.|++.
T Consensus       144 L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~  195 (222)
T 3ehr_A          144 LHAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGT  195 (222)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC-----
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhcc
Confidence            8888888888888888888877 777888888888888888888888888763

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=4e-26  Score=188.15  Aligned_cols=130  Identities=13%  Similarity=0.035  Sum_probs=118.1

Q ss_pred             Hhhcc-CCCChHHHHHHHcCCH----HHHHHHHhcCCCcccccCCCCCcHHHHHHHCCC------HHHHHHHHHcCcccc
Q 046832           14 VKLKA-LRKGNPLHVASAYGHV----DFVKEIINVRPDLAHEVNQDGFSPMHIASSIGH------TGVVRELLKVEQKLC   82 (328)
Q Consensus        14 ~~~~~-~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~------~~iv~~Ll~~~~~~~   82 (328)
                      .+.++ ..|+||||+|+..|+.    +++++|+++|.++ +.+|.+|+||||+|+..|+      .+++++|+++|+++ 
T Consensus        30 ~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadi-  107 (186)
T 3t8k_A           30 YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI-  107 (186)
T ss_dssp             SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCS-
T ss_pred             cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCC-
Confidence            44455 7799999999999985    5999999999998 8999999999999999987      68899999999999 


Q ss_pred             ccCCCCCC-CHHHHHHHcC-----cHHHHHHHHH-hCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhh
Q 046832           83 HQQGPEKN-TPLHCAAIKG-----KVHVLSEMLS-ACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWI  146 (328)
Q Consensus        83 ~~~~~~g~-tpLh~Aa~~g-----~~~~v~~Ll~-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~  146 (328)
                      +.+|.+|. ||||+|+..+     +.++++.|++ .|++ ++.+|..|+||||+|++.++.+++++|.++.
T Consensus       108 n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad-~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          108 TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-LLIKDKWGLTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC-TTCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999 9999999944     4679999999 8887 8999999999999999999999999999864

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.92  E-value=9.4e-26  Score=192.19  Aligned_cols=142  Identities=17%  Similarity=0.139  Sum_probs=121.4

Q ss_pred             HHHHHhcCCCc--ccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCc
Q 046832           37 VKEIINVRPDL--AHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPE  114 (328)
Q Consensus        37 v~~Ll~~~~~~--~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  114 (328)
                      ++.|++++.+.  .+..+.+|.||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|+..|+.+++++|++.+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            45678877655  2344667889999999999999999999999998 88999999999999999999999999999988


Q ss_pred             ccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCcccccccccc-CCCCchhhHH--hhccchh--HHhhcCCCCC
Q 046832          115 CIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKD-EQGNTVLHLA--TRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       115 ~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d-~~G~T~Lh~A--~~~~~~~--~~Ll~~ga~~  186 (328)
                       ++..|..|+||||+|+.+|+.+++++|++      .|++++.+| .+|+||||+|  +..++.+  ++|+++|++.
T Consensus        80 -~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~------~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~  149 (229)
T 2vge_A           80 -VNSPDSHGWTPLHCAASCNDTVICMALVQ------HGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM  149 (229)
T ss_dssp             -TTCCCTTCCCHHHHHHHTTCHHHHHHHHT------TTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT
T ss_pred             -CCCCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc
Confidence             88999999999999999999999999998      678889887 6999999999  8888888  9999999843

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=1.7e-25  Score=171.60  Aligned_cols=111  Identities=21%  Similarity=0.218  Sum_probs=78.6

Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHH
Q 046832           18 ALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAA   97 (328)
Q Consensus        18 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa   97 (328)
                      +..|.||||.|+..|+.++++.|++.+.++ +.+|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHH
Confidence            345667777777777777777777777665 666777777777777777777777777777776 667777777777777


Q ss_pred             HcCcHHHHHHHHHhCCcccccccCCCCCHHHHHH
Q 046832           98 IKGKVHVLSEMLSACPECIEDVTIQHDTALHLAI  131 (328)
Q Consensus        98 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~  131 (328)
                      ..|+.+++++|++.+++ ++..|..|+||||+|.
T Consensus        82 ~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGAD-KTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCC
T ss_pred             HcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHhC
Confidence            77777777777777666 6666777777777773

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.92  E-value=8.3e-27  Score=212.41  Aligned_cols=157  Identities=14%  Similarity=0.160  Sum_probs=131.3

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCc--ccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccc--cccCCCC
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDL--AHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL--CHQQGPE   88 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~--~~~~~~~   88 (328)
                      .+..++.+++||||.|++.|+.+++++|++.+...  ....|..|.||||+||..|+.++|++|+++|++.  .+..+.+
T Consensus        84 ~l~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~  163 (376)
T 2aja_A           84 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN  163 (376)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH
T ss_pred             HHHHcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC
Confidence            44556778889999999999999999999998632  1234567889999999999999999999999752  1223333


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHHhCCccccc--ccCCCCCHHHHHH-HcCChhhHHHHHHhhhcCccccccccccCCCCch
Q 046832           89 KNTPLHCAAIKGKVHVLSEMLSACPECIED--VTIQHDTALHLAI-KNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTV  165 (328)
Q Consensus        89 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~--~~~~g~t~Lh~A~-~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~  165 (328)
                       .||||+|+..|+.+++++|++++++ ++.  .|..|+||||+|+ ++|+.+++++|++.      |.       +|+||
T Consensus       164 -~TpLh~Aa~~G~~eiv~~Ll~~ga~-~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~------ga-------~~~ta  228 (376)
T 2aja_A          164 -YHAFRLAAENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRGHHNVINFLLDC------PV-------MLAYA  228 (376)
T ss_dssp             -HHHHHHHHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS------HH-------HHHHH
T ss_pred             -CCHHHHHHHCCCHHHHHHHHHcCCc-cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhC------CC-------ccchH
Confidence             9999999999999999999999987 555  7888999999999 99999999999973      32       28899


Q ss_pred             hhHHhhccchh--HHhhcCCC
Q 046832          166 LHLATRKKQRK--ELLLGHGT  184 (328)
Q Consensus       166 Lh~A~~~~~~~--~~Ll~~ga  184 (328)
                      ||+|+..|+.+  ++|+++|+
T Consensus       229 L~~Aa~~g~~evv~lL~~~ga  249 (376)
T 2aja_A          229 EIHEFEYGEKYVNPFIARHVN  249 (376)
T ss_dssp             HHCTTTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhcCc
Confidence            99999999998  99999987

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=1.3e-24  Score=166.67  Aligned_cols=114  Identities=18%  Similarity=0.202  Sum_probs=105.2

Q ss_pred             CCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHH
Q 046832           52 NQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAI  131 (328)
Q Consensus        52 d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~  131 (328)
                      +..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.+++ ++..|..|+||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHH
Confidence            567899999999999999999999999998 89999999999999999999999999999988 8899999999999999


Q ss_pred             HcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhcc
Q 046832          132 KNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKK  173 (328)
Q Consensus       132 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~  173 (328)
                      ..|+.+++++|++      .|++++.+|.+|+||||+|...+
T Consensus        82 ~~~~~~~v~~Ll~------~ga~~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           82 YEGHVSCVKLLLS------KGADKTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             HHTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHCCCHH
T ss_pred             HcCCHHHHHHHHH------cCCCCCCcCCCCCCHHHHhCCHH
Confidence            9999999999998      67889999999999999995543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=3.5e-26  Score=187.99  Aligned_cols=148  Identities=20%  Similarity=0.185  Sum_probs=122.2

Q ss_pred             HHHcCCHHHHHHHHhcCCCc----------ccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHH
Q 046832           28 ASAYGHVDFVKEIINVRPDL----------AHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAA   97 (328)
Q Consensus        28 A~~~g~~~~v~~Ll~~~~~~----------~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa   97 (328)
                      |++.|..+.+++|++.+...          ....+.+|.||||+|+..|+.++++.|++ +.++ +.+|.+|.||||+|+
T Consensus         7 aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~   84 (183)
T 3deo_A            7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVA   84 (183)
T ss_dssp             EEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHH
T ss_pred             HHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHH
Confidence            34445555566666443221          11235689999999999999999999999 8887 889999999999999


Q ss_pred             HcCcHHHHHHHHHhCCccccccc-CCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh
Q 046832           98 IKGKVHVLSEMLSACPECIEDVT-IQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK  176 (328)
Q Consensus        98 ~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~  176 (328)
                      ..|+.+++++|++.+++ ++..| ..|+||||+|+..|+.+++++|++      .|++++.+|.+|+||||+|+..++.+
T Consensus        85 ~~~~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~------~ga~~~~~d~~g~tpl~~A~~~~~~~  157 (183)
T 3deo_A           85 GLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAGYVRPEVVEALVE------LGADIEVEDERGLTALELAREILKTT  157 (183)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCCCSSSSCCHHHHHHHTTCHHHHHHHHH------HTCCTTCCCTTSCCHHHHHHHHHHTC
T ss_pred             HcCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHHhcCcHHHHHHHHH------cCCCCcCCCCCCCCHHHHHHHhccCc
Confidence            99999999999999988 77777 889999999999999999999998      57889999999999999999987665


Q ss_pred             --HHhhcCCC
Q 046832          177 --ELLLGHGT  184 (328)
Q Consensus       177 --~~Ll~~ga  184 (328)
                        +.++..++
T Consensus       158 ~~~~~l~~a~  167 (183)
T 3deo_A          158 PKGNPMQFGR  167 (183)
T ss_dssp             CCCSHHHHHH
T ss_pred             ccccHHHHHH
Confidence              44444443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=8.4e-25  Score=185.12  Aligned_cols=162  Identities=15%  Similarity=0.195  Sum_probs=128.4

Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHHhcCC--------------CcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCcccc
Q 046832           17 KALRKGNPLHVASAYGHVDFVKEIINVRP--------------DLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC   82 (328)
Q Consensus        17 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~--------------~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~   82 (328)
                      -+.+++++.+++.+.|+...+..+.+.+.              ...+..|.+|.||||+|+..|+.+++++|++.|+++ 
T Consensus        21 ~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-   99 (222)
T 3ehr_A           21 YTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-   99 (222)
T ss_dssp             SCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-
T ss_pred             CCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccccccccccccccccccCcHHHHHHHHhCCCCc-
Confidence            45666777777777776543332222110              112334667899999999999999999999999998 


Q ss_pred             ccCCCCCCCHHHHHHHcCcHHHHHHHHHh-CCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCC
Q 046832           83 HQQGPEKNTPLHCAAIKGKVHVLSEMLSA-CPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQ  161 (328)
Q Consensus        83 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~  161 (328)
                      +.+|..|.||||+|+..|+.+++++|++. +.+ ++..|..|+||||+|+..|+.+++++|++      .|++++.+|.+
T Consensus       100 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~  172 (222)
T 3ehr_A          100 NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDTALHAAAWKGYADIVQLLLA------KGARTDLRNIE  172 (222)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCCHHHHHHHHTCHHHHHHHHH------HTCCSCCCCTT
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCccccCC
Confidence            88999999999999999999999999998 555 89999999999999999999999999998      67889999999


Q ss_pred             CCchhhHHhhccchh--HHhhcCCCCC
Q 046832          162 GNTVLHLATRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       162 G~T~Lh~A~~~~~~~--~~Ll~~ga~~  186 (328)
                      |+||||+|+..+..+  +.|++.|+..
T Consensus       173 g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          173 KKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             SCCHHHHCCSHHHHHHHC---------
T ss_pred             CCCHHHHhcchhHHHHHHHHhccchhh
Confidence            999999999998888  7888888743

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.91  E-value=6.2e-24  Score=192.80  Aligned_cols=153  Identities=20%  Similarity=0.205  Sum_probs=119.2

Q ss_pred             hhccCCCChHHHHHHHc-CCHHHHHHHHhcCCCcccccC--CCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCC
Q 046832           15 KLKALRKGNPLHVASAY-GHVDFVKEIINVRPDLAHEVN--QDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNT   91 (328)
Q Consensus        15 ~~~~~~g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~t   91 (328)
                      +..+..+.|+||.|+.. |+.++++.|++.+.++ +..|  .+|.||||+|+..|+.+++++|+++|+++ +.+|.+|.|
T Consensus       193 ~l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~T  270 (368)
T 3jue_A          193 DLGSLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRG  270 (368)
T ss_dssp             ----CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCC
T ss_pred             ccccCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCC
Confidence            44556678999999999 9999999999999998 6677  89999999999999999999999999998 899999999


Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhh
Q 046832           92 PLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATR  171 (328)
Q Consensus        92 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~  171 (328)
                      |||+|+..|+.+++++|++++++ ++..|..|+||||+|+..++.+++++|++.+.   ........+..+.|+++++..
T Consensus       271 pLh~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~---~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          271 PLHHATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKM---REAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred             HHHHHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC---CcccccccCCCCCCHHHHHHH
Confidence            99999999999999999999988 89999999999999999999999999998643   334455677889999998876


Q ss_pred             cc
Q 046832          172 KK  173 (328)
Q Consensus       172 ~~  173 (328)
                      ..
T Consensus       347 ~~  348 (368)
T 3jue_A          347 FS  348 (368)
T ss_dssp             --
T ss_pred             HH
Confidence            54

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=8.1e-23  Score=179.06  Aligned_cols=123  Identities=17%  Similarity=0.138  Sum_probs=107.4

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCCcc-----cccCCCCCcHHHHHHHC---CCHHHHHHHHHcCccccccCCCCCCCHH
Q 046832           22 GNPLHVASAYGHVDFVKEIINVRPDLA-----HEVNQDGFSPMHIASSI---GHTGVVRELLKVEQKLCHQQGPEKNTPL   93 (328)
Q Consensus        22 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-----~~~d~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~~~~g~tpL   93 (328)
                      .++|+.|+..|+.+.++.+++.+.++.     +..|..|+||||+|+..   |+.+++++|+++|+++ +.+|.+|.|||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpL  209 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHH
Confidence            368899999999999999999888752     34478899999999998   8899999999999988 88899999999


Q ss_pred             HHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhh
Q 046832           94 HCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWI  146 (328)
Q Consensus        94 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~  146 (328)
                      |+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++++
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999998887 8888999999999999999999999998853

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=4.2e-25  Score=189.98  Aligned_cols=144  Identities=19%  Similarity=0.164  Sum_probs=121.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHc
Q 046832           20 RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIK   99 (328)
Q Consensus        20 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~   99 (328)
                      .+.+++..++..|+.+.+..+...+.    ..+.+|.||||+|+..|+.++++.|++ ++++ +.+|.+|.||||+|+..
T Consensus        14 ~~~~~~l~~~~~g~~~~~~~~~~~~~----~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~   87 (244)
T 3ui2_A           14 EGAMEYLIEWKDGHSPSWVPSSYIAA----DVVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGL   87 (244)
T ss_dssp             TTEEEEEEEESSCCCCEEEEGGGSCH----HHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHH
T ss_pred             CCccHHHHHHHcCCCccccccccccc----ccccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHC
Confidence            45555666666666555444333322    235679999999999999999999999 8887 89999999999999999


Q ss_pred             CcHHHHHHHHHhCCccccccc-CCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh
Q 046832          100 GKVHVLSEMLSACPECIEDVT-IQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK  176 (328)
Q Consensus       100 g~~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~  176 (328)
                      |+.+++++|++.+++ ++..+ ..|+||||+|+.+|+.+++++|++      .|++++.+|.+|+||||+|+..++..
T Consensus        88 g~~~~v~~Ll~~ga~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~ga~~~~~d~~g~t~l~~A~~~~~~~  158 (244)
T 3ui2_A           88 GSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAGYVRPEVVEALVE------LGADIEVEDERGLTALELAREILKTT  158 (244)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTCCCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCcHHHHHHHHHhcc
Confidence            999999999999998 77777 889999999999999999999998      68889999999999999999865544

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.1e-22  Score=147.87  Aligned_cols=92  Identities=32%  Similarity=0.560  Sum_probs=75.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHc
Q 046832           20 RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIK   99 (328)
Q Consensus        20 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~   99 (328)
                      +|+||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHc
Confidence            4788888888888888888888888777 777888888888888888888888888888887 77888888888888888


Q ss_pred             CcHHHHHHHHHhCC
Q 046832          100 GKVHVLSEMLSACP  113 (328)
Q Consensus       100 g~~~~v~~Ll~~~~  113 (328)
                      |+.+++++|++.|+
T Consensus        79 ~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           79 GHLEVVKLLLEAGA   92 (93)
T ss_dssp             TCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCC
Confidence            88888888888765

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=8e-22  Score=172.71  Aligned_cols=163  Identities=18%  Similarity=0.183  Sum_probs=137.0

Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHHhcCCCccc-----------------------ccC-------CCCCcHHHHHHHCC
Q 046832           17 KALRKGNPLHVASAYGHVDFVKEIINVRPDLAH-----------------------EVN-------QDGFSPMHIASSIG   66 (328)
Q Consensus        17 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~-----------------------~~d-------~~g~tpLh~Aa~~g   66 (328)
                      .|.-+.++++.+...|+....+++...-++...                       ...       ....++||.|+..|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~  141 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR  141 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence            567788999999999998776665433221100                       000       01246899999999


Q ss_pred             CHHHHHHHHHcCcccc-----ccCCCCCCCHHHHHHHc---CcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhh
Q 046832           67 HTGVVRELLKVEQKLC-----HQQGPEKNTPLHCAAIK---GKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEA  138 (328)
Q Consensus        67 ~~~iv~~Ll~~~~~~~-----~~~~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~  138 (328)
                      +.+.++.+++.|.++.     +..|..|.||||+|+..   |+.+++++|++++++ ++..|..|+||||+|+.+|+.++
T Consensus       142 d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpLh~A~~~g~~~~  220 (278)
T 1dcq_A          142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYCCLTDNAEC  220 (278)
T ss_dssp             CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHHHHHHHcCCHHH
Confidence            9999999999999852     44588999999999999   899999999999998 89999999999999999999999


Q ss_pred             HHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcCCCCC
Q 046832          139 ITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       139 ~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~  186 (328)
                      +++|++      .|++++.+|.+|+||||+|+..++.+  ++|+++|+..
T Consensus       221 v~~Ll~------~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          221 LKLLLR------GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHH------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHH------cCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999998      68889999999999999999999998  9999998843

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.87  E-value=2.1e-22  Score=152.34  Aligned_cols=108  Identities=23%  Similarity=0.400  Sum_probs=59.5

Q ss_pred             hccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHH
Q 046832           16 LKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHC   95 (328)
Q Consensus        16 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~   95 (328)
                      .+|.+|+||||+|+..|+.++++.|++.+.++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHH
Confidence            34555555555555555555555555555554 455555555555555555555555555555555 5555555555555


Q ss_pred             HHHcCcHHHHHHHHHhCCcccccccCCCCCH
Q 046832           96 AAIKGKVHVLSEMLSACPECIEDVTIQHDTA  126 (328)
Q Consensus        96 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~  126 (328)
                      |+..|+.+++++|+++|++ ++..+..|.+|
T Consensus        82 A~~~~~~~~~~~Ll~~ga~-~n~~~~~~~~~  111 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGAD-VNARSWGSSHH  111 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSS-HHHHSCCCC--
T ss_pred             HHHCCCHHHHHHHHHcCCC-CCcCCcccccc
Confidence            5555555555555555554 44445444443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=6.8e-22  Score=143.72  Aligned_cols=90  Identities=31%  Similarity=0.519  Sum_probs=83.2

Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHc
Q 046832           54 DGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKN  133 (328)
Q Consensus        54 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  133 (328)
                      +|+||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|++.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHc
Confidence            5899999999999999999999999998 88999999999999999999999999999988 888999999999999999


Q ss_pred             CChhhHHHHHHh
Q 046832          134 NQFEAITVLVNW  145 (328)
Q Consensus       134 ~~~~~~~~Ll~~  145 (328)
                      |+.+++++|++.
T Consensus        79 ~~~~~~~~Ll~~   90 (93)
T 1n0q_A           79 GHLEVVKLLLEA   90 (93)
T ss_dssp             TCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHc
Confidence            999999999984

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=2.6e-22  Score=151.81  Aligned_cols=109  Identities=26%  Similarity=0.366  Sum_probs=101.0

Q ss_pred             ccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHH
Q 046832           50 EVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHL  129 (328)
Q Consensus        50 ~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  129 (328)
                      .+|.+|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+++ ++..|..|+||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHH
Confidence            46889999999999999999999999999998 88999999999999999999999999999988 88899999999999


Q ss_pred             HHHcCChhhHHHHHHhhhcCccccccccccCCCCchh
Q 046832          130 AIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVL  166 (328)
Q Consensus       130 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~L  166 (328)
                      |+..++.+++++|++      .|+++|.++..|.||-
T Consensus        82 A~~~~~~~~~~~Ll~------~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDA------KGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHT------TSSSHHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHHH------cCCCCCcCCccccccc
Confidence            999999999999998      7888999999999884

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.85  E-value=3e-22  Score=182.31  Aligned_cols=147  Identities=15%  Similarity=0.113  Sum_probs=121.3

Q ss_pred             CChHHHHHHH-cCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCcccc--ccCCCCCCCHHHHHH
Q 046832           21 KGNPLHVASA-YGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC--HQQGPEKNTPLHCAA   97 (328)
Q Consensus        21 g~t~Lh~A~~-~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~--~~~~~~g~tpLh~Aa   97 (328)
                      +.++++.|.. .++.++++++++++.+        ++||||+|+..|+.+++++|++.|+...  ...+..|.||||+|+
T Consensus        65 ~ll~~~~a~~~~~~~~~~~~l~~~g~~--------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa  136 (376)
T 2aja_A           65 QLLCLYYAHYNRNAKQLWSDAHKKGIK--------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA  136 (376)
T ss_dssp             HHHHHHHHHTTTTCTTHHHHHHHHTCC--------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCC--------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH
Confidence            3467888777 5788899999887654        3599999999999999999999987321  234557889999999


Q ss_pred             HcCcHHHHHHHHHhCCc----ccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCcccccccc--ccCCCCchhhHHh-
Q 046832           98 IKGKVHVLSEMLSACPE----CIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNM--KDEQGNTVLHLAT-  170 (328)
Q Consensus        98 ~~g~~~~v~~Ll~~~~~----~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~--~d~~G~T~Lh~A~-  170 (328)
                      ..|+.+++++|++.+++    .++..+   +||||+|+++|+.+++++|++      .|++++.  +|.+|+||||+|+ 
T Consensus       137 ~~G~~eiv~~Ll~~gad~~~~~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~------~ga~~~~~~~d~~g~TpL~~Aa~  207 (376)
T 2aja_A          137 ENGHLHVLNRLCELAPTEIMAMIQAEN---YHAFRLAAENGHLHVLNRLCE------LAPTEATAMIQAENYYAFRWAAV  207 (376)
T ss_dssp             HTTCHHHHHHHHHSCTTTHHHHHSHHH---HHHHHHHHHTTCHHHHHHHHH------SCGGGHHHHHHHHHHHHHHHHHS
T ss_pred             HcCCHHHHHHHHhCCCCccccccCCCC---CCHHHHHHHCCCHHHHHHHHH------cCCccchhccCCCCCCHHHHHHH
Confidence            99999999999999974    222222   899999999999999999998      5777777  8999999999999 


Q ss_pred             hccchh--HHhhcCCC
Q 046832          171 RKKQRK--ELLLGHGT  184 (328)
Q Consensus       171 ~~~~~~--~~Ll~~ga  184 (328)
                      ..|+.+  ++|+++|+
T Consensus       208 ~~G~~eiv~~Ll~~ga  223 (376)
T 2aja_A          208 GRGHHNVINFLLDCPV  223 (376)
T ss_dssp             TTCCHHHHHHHTTSHH
T ss_pred             HCCCHHHHHHHHhCCC
Confidence            999999  99999875

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=3.9e-21  Score=174.38  Aligned_cols=125  Identities=14%  Similarity=0.109  Sum_probs=115.9

Q ss_pred             CCCCCcHHHHHHHC-CCHHHHHHHHHcCccccccCC--CCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHH
Q 046832           52 NQDGFSPMHIASSI-GHTGVVRELLKVEQKLCHQQG--PEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALH  128 (328)
Q Consensus        52 d~~g~tpLh~Aa~~-g~~~iv~~Ll~~~~~~~~~~~--~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh  128 (328)
                      +..+.||||.|+.. |+.++++.|+++|+++ +..+  .+|.||||+|+..|+.+++++|++++++ ++..|..|+||||
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpLh  273 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLH  273 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHH
Confidence            34566899999999 9999999999999998 7777  8999999999999999999999999988 8899999999999


Q ss_pred             HHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcCCC
Q 046832          129 LAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGT  184 (328)
Q Consensus       129 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga  184 (328)
                      +|+..|+.+++++|++      .|++++.+|.+|+||||+|+..++.+  ++|+..+.
T Consensus       274 ~A~~~g~~~~v~~LL~------~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~  325 (368)
T 3jue_A          274 HATILGHTGLACLFLK------RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKM  325 (368)
T ss_dssp             HHHHHTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             HHHHcCcHHHHHHHHH------CcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            9999999999999998      68889999999999999999999998  88887775

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.84  E-value=4.8e-21  Score=169.67  Aligned_cols=122  Identities=20%  Similarity=0.227  Sum_probs=113.8

Q ss_pred             CCcHHHHHHHCCCHHHHHHHHHcCcccccc------CCCCCCCHHHHHHHc---CcHHHHHHHHHhCCcccccccCCCCC
Q 046832           55 GFSPMHIASSIGHTGVVRELLKVEQKLCHQ------QGPEKNTPLHCAAIK---GKVHVLSEMLSACPECIEDVTIQHDT  125 (328)
Q Consensus        55 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~------~~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t  125 (328)
                      +.++||.|+..|+.+.++.|++.|+++ +.      .+..|.||||+|+..   |+.+++++|++.+++ ++..|..|+|
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~G~T  228 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNT  228 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTTCCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcc-cccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCCCCC
Confidence            346799999999999999999999998 54      689999999999997   899999999999988 8899999999


Q ss_pred             HHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcCCC
Q 046832          126 ALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGT  184 (328)
Q Consensus       126 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga  184 (328)
                      |||+|+.+|+.+++++|++      .|++++.+|.+|+||||+|+..++.+  ++|+++|+
T Consensus       229 pLh~A~~~g~~~~v~~Ll~------~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga  283 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLK------GRALVGTVNEAGETALDIARKKHHKECEELLEQAQA  283 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHH------TTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHH------cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC
Confidence            9999999999999999998      68889999999999999999999998  99998886

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.81  E-value=1.2e-19  Score=136.17  Aligned_cols=94  Identities=21%  Similarity=0.264  Sum_probs=64.2

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCH
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTP   92 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp   92 (328)
                      .....|.+|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tp   93 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTA   93 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcH
Confidence            34556667777777777777777777777777666 666777777777777777777777777777776 6677777777


Q ss_pred             HHHHHHcCcHHHHHHH
Q 046832           93 LHCAAIKGKVHVLSEM  108 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~L  108 (328)
                      ||+|+..|+.+++++|
T Consensus        94 l~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           94 FDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            7777777777777654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.79  E-value=2.9e-19  Score=134.04  Aligned_cols=95  Identities=22%  Similarity=0.274  Sum_probs=83.7

Q ss_pred             CcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCC
Q 046832           46 DLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDT  125 (328)
Q Consensus        46 ~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t  125 (328)
                      ......|.+|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+++ ++..|..|+|
T Consensus        15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t   92 (110)
T 2zgd_A           15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKT   92 (110)
T ss_dssp             -------CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             CcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCc
Confidence            344567889999999999999999999999999988 88999999999999999999999999999887 8889999999


Q ss_pred             HHHHHHHcCChhhHHHH
Q 046832          126 ALHLAIKNNQFEAITVL  142 (328)
Q Consensus       126 ~Lh~A~~~~~~~~~~~L  142 (328)
                      |||+|+.+|+.+++++|
T Consensus        93 pl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           93 AFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHh
Confidence            99999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	328
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.003
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.004
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	6e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (198), Expect = 1e-17
 Identities = 55/239 (23%), Positives = 91/239 (38%), Gaps = 47/239 (19%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLHVAS  GH+  VK ++       +  N    +P+H+A+  GHT V + LL+ + K+ +
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-N 60

Query: 84  QQGPEKNTPLHCAAIKGKVHVLSEMLSACPE----------------------------- 114
            +  +  TPLHCAA  G  +++  +L                                  
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 120

Query: 115 ---CIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATR 171
                  +T +  T LH+A K  +     +L+      +R+   N   + G T LH+A  
Sbjct: 121 KEASQACMTKKGFTPLHVAAKYGKVRVAELLL------ERDAHPNAAGKNGLTPLHVAVH 174

Query: 172 KKQRK--ELLLGHG-----TYSSGRLELIALHQQRQLDSRHDFVEYFKFKKGRDSPGET 223
                  +LLL  G        +G   L    +Q Q++     ++Y          G T
Sbjct: 175 HNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVT 233

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (171), Expect = 3e-14
 Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 11/159 (6%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
            PLH+A+  GH + V  +++ + +  +  N+ G +P+H+ +  GH  V   L+K    + 
Sbjct: 233 TPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 291

Query: 83  HQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVL 142
                   TPLH A+  G + ++ + L      +   T    + LH A +    + +T+L
Sbjct: 292 ATT-RMGYTPLHVASHYGNIKLV-KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 349

Query: 143 VNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELL 179
           +    G       N     G T L +A R       ++L
Sbjct: 350 LK--NGAS----PNEVSSDGTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (169), Expect = 7e-14
 Identities = 46/208 (22%), Positives = 84/208 (40%), Gaps = 16/208 (7%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
            PLHVA+ YG V   + ++       +   ++G +P+H+A    +  +V+ LL       
Sbjct: 134 TPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP- 191

Query: 83  HQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVL 142
           H       TPLH AA + +V V   +L        + ++Q  T LHLA +    E + +L
Sbjct: 192 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE-SVQGVTPLHLAAQEGHAEMVALL 250

Query: 143 VNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG-----TYSSGRLELIAL 195
           ++           N+ ++ G T LHL  ++      ++L+ HG     T   G   L   
Sbjct: 251 LSKQA------NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA 304

Query: 196 HQQRQLDSRHDFVEYFKFKKGRDSPGET 223
                +      +++      +   G +
Sbjct: 305 SHYGNIKLVKFLLQHQADVNAKTKLGYS 332

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 1e-09
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 91  TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMK 150
           TPLH A+  G + ++  +L           ++ +T LH+A +    E    L+      +
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLL------Q 54

Query: 151 REEIFNMKDEQGNTVLHLATRK--KQRKELLLGH 182
            +   N K +   T LH A R       +LLL +
Sbjct: 55  NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN 88

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 2e-08
 Identities = 41/184 (22%), Positives = 65/184 (35%), Gaps = 40/184 (21%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAH--------------------------------E 50
            PLH A+  GH + VK ++    +                                    
Sbjct: 68  TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC 127

Query: 51  VNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLS 110
           + + GF+P+H+A+  G   V   LL+ +    +  G    TPLH A     + ++  +L 
Sbjct: 128 MTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLP 186

Query: 111 ACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLAT 170
                         T LH+A K NQ E    L+ +          N +  QG T LHLA 
Sbjct: 187 RGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA------NAESVQGVTPLHLAA 239

Query: 171 RKKQ 174
           ++  
Sbjct: 240 QEGH 243

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 7e-08
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 3/99 (3%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
            PLHVAS YG++  VK ++  + D  +   + G+SP+H A+  GHT +V  LLK      
Sbjct: 299 TPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP- 356

Query: 83  HQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTI 121
           ++   +  TPL  A   G + V  ++L    +    V +
Sbjct: 357 NEVSSDGTTPLAIAKRLGYISVT-DVLKVVTDETSFVLV 394

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 1e-07
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
           +PLH A+  GH D V  ++       +EV+ DG +P+ IA  +G+  V   L  V  +  
Sbjct: 332 SPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETS 390

Query: 83  HQQGPEKN 90
                +K+
Sbjct: 391 FVLVSDKH 398

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (161), Expect = 3e-13
 Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 19/175 (10%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAH---------EVNQDGFSPMHIASSIGHTGVVRE 73
                A+ YG V  +K +     ++            + + G + +  A+  GH  V++ 
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 166

Query: 74  LLK---VEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLA 130
           LL     +   C   G         ++    V  ++ +L      +     +  T L LA
Sbjct: 167 LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 226

Query: 131 IKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
           ++      +  L+      +     N  D  G T L LA   K +K  ELL   G
Sbjct: 227 VEKKHLGLVQRLLE-----QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 276

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 1e-12
 Identities = 37/171 (21%), Positives = 65/171 (38%), Gaps = 8/171 (4%)

Query: 18  ALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKV 77
           A+   + L  A     VD V++++    ++  +  + G++P+H A  +    +V  LL+ 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 78  EQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFE 137
                 ++          AAI G V +L   LS   +  E       TA   A    + +
Sbjct: 62  GADPVLRKKNGATPF-LLAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVK 119

Query: 138 AITVLV----NWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGH 182
           A+  L     N     K +E      + G T L  A  K   +  ++LL  
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 170

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.8 bits (159), Expect = 7e-13
 Identities = 25/177 (14%), Positives = 54/177 (30%), Gaps = 21/177 (11%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH  ++  +++ VK ++    +     +  G S +  A    +         +   L  
Sbjct: 110 PLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP 168

Query: 84  Q---QGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD------------TALH 128
               +     T LH   I   +   S       + +    ++              +  +
Sbjct: 169 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 228

Query: 129 LAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
                 +   +  L           + N +D  G+T L++A R       + LL +G
Sbjct: 229 DKNGERKDSILENL---DLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 282

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 18/91 (19%)

Query: 17  KALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQ---DGFSPMHIASSIGHTGVVRE 73
               +             D + E ++++  +A+ +N    +G + ++IA+ +G+  +V  
Sbjct: 218 SGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA 277

Query: 74  LLKVEQKLCHQQGPEKN-------TPLHCAA 97
           LL          G +          P+   A
Sbjct: 278 LL--------DYGADPFIANKSGLRPVDFGA 300

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.5 bits (137), Expect = 2e-10
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 9/148 (6%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
           PLH A        V+E+++ +P L  + +QDG  P+H + S     +   LL   + +  
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 84  QQGPEKNTPLHCAAIKGKVHVLSEML---SACPECIEDVTIQHDTALHLAIKNNQFEAIT 140
              P+ +            ++              +  +T Q  T LHLA+    FE   
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122

Query: 141 VLVNWIRGMKREEIFNMKDEQGNTVLHL 168
            L+     +       +KD+     LH 
Sbjct: 123 FLIENGASV------RIKDKFNQIPLHR 144

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 3e-07
 Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 6/110 (5%)

Query: 74  LLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKN 133
            L         +      PLH AA  G + ++  +       +     Q  T L  A+  
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 182

Query: 134 NQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELLLGHG 183
              +A  +LV      K    +++ D +G     +A  ++  K+  L + 
Sbjct: 183 GHGDAAVLLVE-----KYGAEYDLVDNKGAKAEDVALNEQ-VKKFFLNNV 226

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 6e-07
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 90  NTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQ 135
           N PLH A ++ +   + E+L + P  +          LH ++    
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA 46

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 6e-07
 Identities = 23/132 (17%), Positives = 42/132 (31%)

Query: 58  PMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIE 117
           P+H A        V+ELL  +  L  Q+  +   PLH +       + S +LS       
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 118 DVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKE 177
           D            I  +      V   + R +K +             L +  +  +  +
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122

Query: 178 LLLGHGTYSSGR 189
            L+ +G     +
Sbjct: 123 FLIENGASVRIK 134

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 124 DTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQ 174
           +  LH A   N+F  +  L++      +  +   KD+ G   LH +   + 
Sbjct: 1   NYPLHQACMENEFFKVQELLH-----SKPSLLLQKDQDGRIPLHWSVSFQA 46

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 9e-04
 Identities = 15/86 (17%), Positives = 33/86 (38%)

Query: 49  HEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEM 108
              ++    P+H A+S+G   ++  L  + +   + Q  +  TPL  A  +G       +
Sbjct: 132 RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 191

Query: 109 LSACPECIEDVTIQHDTALHLAIKNN 134
           +       + V  +   A  +A+   
Sbjct: 192 VEKYGAEYDLVDNKGAKAEDVALNEQ 217

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 12/83 (14%), Positives = 30/83 (36%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
            PLH A++ G +  ++ +  +     +  ++ G++P+  A + GH      L++      
Sbjct: 140 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY 199

Query: 83  HQQGPEKNTPLHCAAIKGKVHVL 105
                +       A  +      
Sbjct: 200 DLVDNKGAKAEDVALNEQVKKFF 222

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (138), Expect = 3e-10
 Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 7/125 (5%)

Query: 51  VNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH--QQGPEKNTPLHCAAIKGKVHVLSEM 108
           V +DG + +H+A    H   +  LL       +   Q     T LH AAI G+   + ++
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 109 LSACPECIEDVTIQHDTALHLAIKNNQFEAITVLV----NWIRGMKREEIFNMKDEQGNT 164
            +A    +      H    HLA +        VL+    +  R      +   +D   +T
Sbjct: 65  YAAGAGVLVAERGGHTAL-HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123

Query: 165 VLHLA 169
               A
Sbjct: 124 SHAPA 128

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.6 bits (122), Expect = 3e-08
 Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 3/114 (2%)

Query: 23  NPLHVASAYGHVDFVKEIIN--VRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQK 80
             LH+A  + H  F+  ++      +     N  G + +H+A+ +G    V +L      
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70

Query: 81  LCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
                    +T LH A           +L   P    D +  + T       + 
Sbjct: 71  -VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 28/172 (16%), Positives = 52/172 (30%), Gaps = 20/172 (11%)

Query: 26  HVASAYGHVDFVKEIINVRPDLAHEVN------------QDGFSPMHIASSIGHTGVVRE 73
           H+A           ++  RP    + +                +P  + S          
Sbjct: 83  HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEP 142

Query: 74  LLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKN 133
             +  +     +  + +TPLH A I     ++  +  A  +  +       T LHLA++ 
Sbjct: 143 RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA 202

Query: 134 NQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
                + +L+    G         +   G T L  A  +       LL  HG
Sbjct: 203 QAASVLELLLK--AGAD----PTARMYGGRTPLGSALLRPNPILARLLRAHG 248

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (102), Expect = 9e-06
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 124 DTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK 172
           DTALHLA+ +     +  L+        E + +++++ G T LHLA   
Sbjct: 10  DTALHLAVIHQHEPFLDFLLG--FSAGHEYL-DLQNDLGQTALHLAAIL 55

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 58.4 bits (140), Expect = 3e-10
 Identities = 26/214 (12%), Positives = 49/214 (22%), Gaps = 54/214 (25%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDL-AHEVNQDGFSPMHIASSIGHTGVVRELLKVEQ-- 79
               +A+  GH+  +  +  + P      +  + +    +A+  GH  V+  L ++    
Sbjct: 128 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 187

Query: 80  --------------------------KLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACP 113
                                                         G+ +V   +     
Sbjct: 188 ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVN 247

Query: 114 ECIEDVTIQH----------------------DTALHLAIKNNQFEAITVLVNWIRGMKR 151
              E                               L         + I  L++ I G+K 
Sbjct: 248 RLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLS-IPGIKA 306

Query: 152 EEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
                      N +L LA R   +    LLL   
Sbjct: 307 LAPTATIPGDANELLRLALRLGNQGACALLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 55.3 bits (132), Expect = 3e-09
 Identities = 21/165 (12%), Positives = 47/165 (28%), Gaps = 13/165 (7%)

Query: 14  VKLKALRKGNPLHVASAYGH---VDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGV 70
              K ++      VA+  G    +D +  ++     +   +  + +    +A+  GH  V
Sbjct: 83  AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHV 141

Query: 71  VRELLKVEQKLCHQQGPEKN-TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD--TAL 127
           +  L ++           +N      AA  G +HVL+ +    P     +    +     
Sbjct: 142 LNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFR 201

Query: 128 HLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK 172
             A+       I  L+          +    +             
Sbjct: 202 WAAVGRGHHNVINFLL------DCPVMLAYAEIHEFEYGEKYVNP 240

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 3e-10
 Identities = 27/165 (16%), Positives = 58/165 (35%), Gaps = 12/165 (7%)

Query: 20  RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQ 79
           R G+ L  A+A G V  V+ +++        +N+ G + + +         +     ++Q
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALE---LLKQ 57

Query: 80  KLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAI 139
                      T     A +       ++L      +          +HLA++       
Sbjct: 58  GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT--- 114

Query: 140 TVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGH 182
                 +  +  E   + +D +G T L LA ++  +   ++L GH
Sbjct: 115 ----AVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 6e-10
 Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 8/143 (5%)

Query: 25  LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQ 84
           +   +  G ++ +KE I     LA   +QD  + +H A S GHT +V     ++  +   
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEF--LLQLGVPVN 64

Query: 85  QGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVN 144
              +        A       + + L      +  V     T LH A   N+ E   +L+ 
Sbjct: 65  DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 124

Query: 145 WIRGMKREEIFNMKDEQGNTVLH 167
              G       + KD    T +H
Sbjct: 125 --GGAN----PDAKDHYEATAMH 141

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 2e-08
 Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 8/121 (6%)

Query: 49  HEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEM 108
           + VNQ+G +P+H A+S     +   LL+        +   + T +H AA KG + +   +
Sbjct: 97  NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKM-IHI 154

Query: 109 LSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHL 168
           L            + +T LHLA    + E   +LV+  +G        +++++  T L +
Sbjct: 155 LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS--QGAS----IYIENKEEKTPLQV 208

Query: 169 A 169
           A
Sbjct: 209 A 209

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 4/121 (3%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
            PLH A++    +    ++    +     +    + MH A++ G+  ++  LL  +    
Sbjct: 105 TPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN 163

Query: 83  HQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVL 142
             Q  E NTPLH A  + +V     ++S     I     +  T L +A K      +  +
Sbjct: 164 I-QDTEGNTPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVA-KGGLGLILKRM 220

Query: 143 V 143
           V
Sbjct: 221 V 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 30/169 (17%), Positives = 48/169 (28%), Gaps = 34/169 (20%)

Query: 90  NTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGM 149
           N  +   A  GK+  L E + A             TALH A      E +  L+     +
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 150 KREEIF---------------------------NMKDEQGNTVLHLATRKKQRK--ELLL 180
             ++                             N  ++ G T LH A  K + +   +LL
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 181 GHG-----TYSSGRLELIALHQQRQLDSRHDFVEYFKFKKGRDSPGETR 224
             G             +     +  L   H  + Y      +D+ G T 
Sbjct: 124 EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTP 172

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (125), Expect = 3e-09
 Identities = 25/165 (15%), Positives = 53/165 (32%), Gaps = 13/165 (7%)

Query: 22  GNPLHVASAYGHVDFVKEIINVRPDLAHEVN-QDGFSPMHIASSIGHTGVVRELLKVEQK 80
           GN L  A+A G ++ +  ++    +    VN Q+GF    +         +   L +   
Sbjct: 2   GNELASAAARGDLEQLTSLLQNNVN----VNAQNGFGRTALQVMKLGNPEIARRLLLRGA 57

Query: 81  LCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAIT 140
               +       +H AA  G +  L  +L    +   +    +      A + +      
Sbjct: 58  NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV--- 114

Query: 141 VLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
                            ++ +G+T   LA    + +   L+  +G
Sbjct: 115 ---VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 51.3 bits (121), Expect = 4e-08
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
             LH A+   ++  VK ++  +     + ++DG +P+ +A+  G   VV  L++    + 
Sbjct: 189 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV- 247

Query: 83  HQQGPEKNTPLHCAAIKGKVHVLSEMLSAC 112
                  +T    A      +++ ++   C
Sbjct: 248 EAVDATDHTARQLAQANNHHNIV-DIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.7 bits (117), Expect = 1e-07
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 1/125 (0%)

Query: 18  ALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKV 77
                    VASA   V+   ++              G + +H A+ + +  +V+ L+  
Sbjct: 150 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE 209

Query: 78  EQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFE 137
           +     +Q  +  TP+  AA +G++ V+  ++      +E V     TA  LA  NN   
Sbjct: 210 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHN 268

Query: 138 AITVL 142
            + + 
Sbjct: 269 IVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 16/123 (13%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQ----DGFSPMHIASSIGHTGVVRELLKVE 78
           +P+ + +       + E I         VN        + +H  +S        +L+  E
Sbjct: 2   SPIKLHTEAAGSYAITEPI-----TRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHE 56

Query: 79  QKLCHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAI 131
            K C   G + N       TPL  A +  +  +++ ++ A  +       +       A 
Sbjct: 57  AKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAA 116

Query: 132 KNN 134
             +
Sbjct: 117 NRD 119

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.9 bits (107), Expect = 2e-06
 Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 8/100 (8%)

Query: 83  HQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVL 142
             +  +  T LH AA    + ++  ++       +       T + LA +  + E +  L
Sbjct: 181 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 240

Query: 143 VNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLL 180
           +   +G          D   +T   LA         ++  
Sbjct: 241 IQ--QGAS----VEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 5/80 (6%)

Query: 91  TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD-TALHLAIKNNQFEAITVLVNWIRGM 149
           +P+         + ++E ++   E +  +  +H+ T LH    N+  E    L+      
Sbjct: 2   SPIKLHTEAAGSYAITEPITR--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 150 KREEIF--NMKDEQGNTVLH 167
                   N  D   NT L 
Sbjct: 60  CIAAGADVNAMDCDENTPLM 79

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 4e-08
 Identities = 28/204 (13%), Positives = 53/204 (25%), Gaps = 49/204 (24%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQ---DGFSPMHIASSIGHTGVV-------- 71
           + LH+A  +       E+I         +N       +P+H+A       +         
Sbjct: 4   SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC 63

Query: 72  ------------------------------RELLKVEQKLCHQQGPEKNTPLHCAAIKGK 101
                                                  +        +T LH A+I G 
Sbjct: 64  DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 123

Query: 102 VHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQ 161
           + ++  ++S   +          TALHLA+     +           +K     N    Q
Sbjct: 124 LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD------LVSLLLKCGADVNRVTYQ 177

Query: 162 GNTVLHLATRKKQRK--ELLLGHG 183
           G +   L   +   +  + L    
Sbjct: 178 GYSPYQLTWGRPSTRIQQQLGQLT 201

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 6e-05
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 4/115 (3%)

Query: 49  HEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEM 108
              N +G + +H+AS  G+ G+V  L+ +   +  Q+     T LH A       ++S +
Sbjct: 105 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 164

Query: 109 LSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIF-NMKDEQG 162
           L    +    VT Q  +   L            L      ++  ++    +DE+ 
Sbjct: 165 LKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQ--LTLENLQMLPESEDEES 216

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 16/97 (16%), Positives = 45/97 (46%), Gaps = 1/97 (1%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
             LH+AS +G++  V+ ++++  D+  +   +G + +H+A  + +  +V  LLK      
Sbjct: 113 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-V 171

Query: 83  HQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDV 119
           ++   +  +P      +    +  ++     E ++ +
Sbjct: 172 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQML 208

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 90  NTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD---TALHLAIKNNQFEAITVLVNWI 146
           ++ LH A I  +  +  E++      +  +  Q++   T LHLA+  NQ E    L+   
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 62

Query: 147 RGMKREEIFNM 157
              +  +    
Sbjct: 63  CDPELRDFRGN 73

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 5e-04
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 124 DTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATR 171
           D+ LHLAI + +      ++  +         N ++    T LHLA  
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQV--KGDLAFLNFQNNLQQTPLHLAVI 48

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 7e-04
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 54 DGFSPMHIASSIGHTGVVRELLKV---EQKLCHQQGPEKNTPLHCA 96
          DG S +H+A       +  E+++    +    + Q   + TPLH A
Sbjct: 1  DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.4 bits (111), Expect = 9e-07
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
             LHVA+A G+ + +K +I  R D+ +  + DG++P+H A+  G     R L++    + 
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCDM- 258

Query: 83  HQQGPEKNTPLHCAA 97
                   T    A 
Sbjct: 259 EAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.1 bits (105), Expect = 4e-06
 Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 7/89 (7%)

Query: 84  QQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLV 143
           +      T LH AA KG   VL ++L      +        T LH A    + EA  +LV
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVL-KLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV 252

Query: 144 NWIRGMKREEIFNMKDEQGNTVLHLATRK 172
                          ++ G T   +A   
Sbjct: 253 E--NLCD----MEAVNKVGQTAFDVADED 275

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 50  EVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEML 109
              + G + +H+A++ G+T V++ L++    +  +   +  TPLH AA  GK      ++
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY-DGWTPLHAAAHWGKEEACRILV 252

Query: 110 SACPECIEDVTIQHDTALHLAIKNN 134
               + +E V     TA  +A ++ 
Sbjct: 253 ENLCD-MEAVNKVGQTAFDVADEDI 276

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.6 bits (96), Expect = 7e-05
 Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQK 80
           PLH A+ +G  +  + ++    D+   VN+ G +   +A       ++  L ++++K
Sbjct: 235 PLHAAAHWGKEEACRILVENLCDM-EAVNKVGQTAFDVADE----DILGYLEELQKK 286

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 8/107 (7%)

Query: 79  QKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEA 138
            +    +             +  +    + L++             TALH+A      E 
Sbjct: 155 LQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEV 214

Query: 139 ITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
           + +L+     +      N+KD  G T LH A    + +   +L+ + 
Sbjct: 215 LKLLIQARYDV------NIKDYDGWTPLHAAAHWGKEEACRILVENL 255

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 6e-06
 Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 3/123 (2%)

Query: 22  GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
            + L  A+A G V+ V+ ++      A+    + +    I   +  +  V ELL +    
Sbjct: 4   ADWLATAAARGRVEEVRALLEAG---ANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 82  CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITV 141
            +   P   T     A +        +L      ++         + LA +    +    
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 120

Query: 142 LVN 144
           L  
Sbjct: 121 LRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 3e-04
 Identities = 19/125 (15%), Positives = 34/125 (27%), Gaps = 10/125 (8%)

Query: 58  PMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIE 117
            +  A++ G    VR LL        + G   N P        +V ++     A    + 
Sbjct: 6   WLATAAARGRVEEVRALL--------EAGANPNAPNSYGRRPIQVMMMGSARVAELLLLH 57

Query: 118 DVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK- 176
                      L    +       L   +   +     +++D  G   + LA     R  
Sbjct: 58  GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDV 117

Query: 177 -ELLL 180
              L 
Sbjct: 118 ARYLR 122

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 28/224 (12%), Positives = 63/224 (28%), Gaps = 67/224 (29%)

Query: 24  PLHVASAYGHVDFVKEIINVRPDLAHEVNQ---DGFSPMHIAS----------------- 63
           PLH+A   G++  V  ++N+      E++       +P+H+A                  
Sbjct: 6   PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 65

Query: 64  -------------------SIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHV 104
                              S      + +           +  +  T LH A        
Sbjct: 66  PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET 125

Query: 105 LSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIF--------- 155
           +  +L    +          + L  A++NN    + +L+     +  +            
Sbjct: 126 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 185

Query: 156 ------------------NMKDEQGNTVLHLATRKKQRKELLLG 181
                             ++K+   +T L +A  ++   ++L G
Sbjct: 186 GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV-IDILRG 228

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 5e-05
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVR 72
           + LH AS  G +  V+ ++    D     N    +P+ +A S     ++R
Sbjct: 179 SALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 6e-05
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 4/132 (3%)

Query: 54  DGFSPMHIASSIGHTGVVRELLKVEQKL---CHQQGPEKNTPLHCAAIKGKVHVLSEMLS 110
           DG +P+HIA   G+   V  L+ + Q+           + TPLH  A+   +  +  +L 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHL-AVITTLPSVVRLLV 60

Query: 111 ACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLAT 170
                   +     TA HLA ++     +  L++       +      D      + + T
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120

Query: 171 RKKQRKELLLGH 182
             ++  +LLL  
Sbjct: 121 ECQETVQLLLER 132

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 14/140 (10%)

Query: 54  DGFSPMHIASSIGHTGVVRELLK-------VEQKLCHQQGPEK-NTPLHCAAIKGKVHVL 105
           D  + +H       T  +  LL+       + +K+    G E   T LH A        L
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 106 SEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTV 165
             ++    +   ++  Q              +           ++ +    + +E G T 
Sbjct: 62  -HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAE---CLKLLLRGKASIEIANESGETP 117

Query: 166 LHLATRKKQRK--ELLLGHG 183
           L +A R K     ELL    
Sbjct: 118 LDIAKRLKHEHCEELLTQAL 137

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 17/136 (12%), Positives = 39/136 (28%), Gaps = 10/136 (7%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDL-----AHEVNQDGFSPMHI---ASSIGHTGVVREL 74
           + L  A     +  + +      DL         ++   + +H+   +       +V  L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 75  LKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
           ++    L  Q G       +C        +   +       I +     +T L +A +  
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIAN--ESGETPLDIAKRLK 125

Query: 135 QFEAITVLVNWIRGMK 150
                 +L   + G  
Sbjct: 126 HEHCEELLTQALSGRF 141

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (90), Expect = 2e-04
 Identities = 21/160 (13%), Positives = 50/160 (31%), Gaps = 12/160 (7%)

Query: 22  GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
           G  L  A+  G  D V+ ++            D      +  +  +       + +   +
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAP----FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 82  CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITV 141
                 + +      A       + E+L      +    +   TALH A ++N  E + +
Sbjct: 59  SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118

Query: 142 LVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELL 179
           L+ +   +      + + +   T   ++         E+L
Sbjct: 119 LIKYGADV------HTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 7/131 (5%)

Query: 37  VKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCA 96
           + +++    +L   +++ G + +H+A+        +  L       + Q     TPLH A
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAK-RLLDAGADANSQDNTGRTPLHAA 63

Query: 97  AIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFN 156
                + V   +L      +        T L LA +      +  L+     +      N
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI------N 117

Query: 157 MKDEQGNTVLH 167
             D  G T LH
Sbjct: 118 AADNSGKTALH 128

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.6 bits (88), Expect = 5e-04
 Identities = 30/186 (16%), Positives = 48/186 (25%), Gaps = 31/186 (16%)

Query: 23  NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
             LH+A+ +   D  K +++   D   + N          ++         L      L 
Sbjct: 25  TSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLN 84

Query: 83  HQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAI--- 139
            +        +  A +  +  V  E L      I        TALH A   N  EA+   
Sbjct: 85  ARMHDGTTPLILAARLAIEGMV--EDLITADADINAADNSGKTALHWAAAVNNTEAVNIL 142

Query: 140 ---------------TVLVNWIRGMKREEI---------FNMKDEQGNTVLHLATRKKQR 175
                          T L    R    E             + D        +A+ +   
Sbjct: 143 LMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHH 202

Query: 176 K--ELL 179
               LL
Sbjct: 203 DIVRLL 208

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.6 bits (80), Expect = 0.002
 Identities = 20/122 (16%), Positives = 33/122 (27%), Gaps = 9/122 (7%)

Query: 58  PMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIE 117
               A   G    V++ +   +     +  E        A       + E L      I 
Sbjct: 5   EFMWALKNGDLDEVKDYV--AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62

Query: 118 DVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKE 177
                H T L  A+       + +L++            +K   G T L      +  K 
Sbjct: 63  APDKHHITPLLSAVYEGHVSCVKLLLSKGADK------TVKGPDGLTALEAT-DNQAIKA 115

Query: 178 LL 179
           LL
Sbjct: 116 LL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	328
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.9
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.89
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.87
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.87
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.85

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-32  Score=233.94  Aligned_cols=165  Identities=19%  Similarity=0.238  Sum_probs=126.0

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccc------------
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL------------   81 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~------------   81 (328)
                      ++.+|..|+||||+|+..|+.++++.|++.|.++ +..|.+|.||||+|+..|+.+++++|++.+...            
T Consensus        38 i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~  116 (255)
T d1oy3d_          38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS  116 (255)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------
T ss_pred             ccCcCCCCCCccchHHhhcccccccccccccccc-cccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHH
Confidence            5566677777777777777777777777777776 667777777777777777777777776543211            


Q ss_pred             ----------------------------------cccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHH
Q 046832           82 ----------------------------------CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTAL  127 (328)
Q Consensus        82 ----------------------------------~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L  127 (328)
                                                        .+.+|.+|.||||+|++.|+.+++++|++.+.+.....+..|+|||
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL  196 (255)
T d1oy3d_         117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL  196 (255)
T ss_dssp             ---------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH
T ss_pred             hhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccc
Confidence                                              1345667888888888888888888888888775555667788888


Q ss_pred             HHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcCCCC
Q 046832          128 HLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTY  185 (328)
Q Consensus       128 h~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~  185 (328)
                      |+|++.|+.+++++|++      .|+++|.+|.+|+||||+|+..++.+  ++|+++||+
T Consensus       197 ~~A~~~~~~~~v~~Ll~------~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         197 HLAVEAQAASVLELLLK------AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             cccccccHHHHHHHHHH------CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            88888888888888887      56778888888888888888888888  888888884

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-31  Score=224.03  Aligned_cols=167  Identities=26%  Similarity=0.403  Sum_probs=155.4

Q ss_pred             HHHHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCC
Q 046832           11 IFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN   90 (328)
Q Consensus        11 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~   90 (328)
                      +.+++.+|.+|+||||+|+..|+.++++++++.+.+. ...+..+.++++.++..|+.+++++|+++++++ +.+|.+|.
T Consensus        27 ~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~-~~~d~~g~  104 (223)
T d1uoha_          27 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGC  104 (223)
T ss_dssp             GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCC
T ss_pred             CCcCcCcCCCCCCHHHHHHHhhhhccccccccccccc-ccccccccccccccccccccchhHHHhccCcee-EeeCCCCC
Confidence            3457788999999999999999999999999998877 666778999999999999999999999999988 89999999


Q ss_pred             CHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHh
Q 046832           91 TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLAT  170 (328)
Q Consensus        91 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~  170 (328)
                      ||||+|+..|+.+++++|++++.+ ++..|..|.||||+|+..++.+++++|.+      .+.+++.+|.+|+||||+|+
T Consensus       105 tpL~~A~~~~~~e~~~~Ll~~g~d-~~~~~~~~~t~L~~a~~~~~~~~~~~L~~------~~~~i~~~d~~g~TpL~~Aa  177 (223)
T d1uoha_         105 TPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILLY------YKASTNIQDTEGNTPLHLAC  177 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCSCCCCTTCCCHHHHHH
T ss_pred             chhhHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCccchhhhhcCCcchhhhhcc------ccceeeeccCCCCceecccc
Confidence            999999999999999999999987 78899999999999999999999999987      67789999999999999999


Q ss_pred             hccchh--HHhhcCCCCC
Q 046832          171 RKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       171 ~~~~~~--~~Ll~~ga~~  186 (328)
                      ..++.+  ++|+++|++.
T Consensus       178 ~~g~~~~v~~LL~~Gad~  195 (223)
T d1uoha_         178 DEERVEEAKLLVSQGASI  195 (223)
T ss_dssp             HTTCHHHHHHHHHTTCCS
T ss_pred             ccCcHHHHHHHHHCCCCC
Confidence            999999  9999999844

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=4.3e-31  Score=226.19  Aligned_cols=164  Identities=23%  Similarity=0.271  Sum_probs=143.6

Q ss_pred             hccCCCChHHHHHHHcCCHHHHHHHHhcCCC--cccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHH
Q 046832           16 LKALRKGNPLHVASAYGHVDFVKEIINVRPD--LAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPL   93 (328)
Q Consensus        16 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL   93 (328)
                      ..|++|+||||+||+.|+.+++++|++.+++  ..+.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|.|||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tpL   82 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTAL   82 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccchhh
Confidence            4578999999999999999999999998755  34678899999999999999999999999999998 89999999999


Q ss_pred             HHHHHcCcHHHHHHHHHhCCc----------------------------------------------ccccccCCCCCHH
Q 046832           94 HCAAIKGKVHVLSEMLSACPE----------------------------------------------CIEDVTIQHDTAL  127 (328)
Q Consensus        94 h~Aa~~g~~~~v~~Ll~~~~~----------------------------------------------~~~~~~~~g~t~L  127 (328)
                      |+|+..|+.++++.|++....                                              .++.+|..|+|||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence            999999999999998654311                                              1345678899999


Q ss_pred             HHHHHcCChhhHHHHHHhhhcCccccccc-cccCCCCchhhHHhhccchh--HHhhcCCCCC
Q 046832          128 HLAIKNNQFEAITVLVNWIRGMKREEIFN-MKDEQGNTVLHLATRKKQRK--ELLLGHGTYS  186 (328)
Q Consensus       128 h~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~  186 (328)
                      |+|+++++.+++++|++.      +.+.+ .++..|+||||+|++.++.+  ++|+++|++.
T Consensus       163 h~A~~~~~~~~v~~Ll~~------~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadi  218 (255)
T d1oy3d_         163 HVAVIHKDAEMVRLLRDA------GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP  218 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHH------TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cccccccccccccchhcc------cccccccccccccccccccccccHHHHHHHHHHCCCCC
Confidence            999999999999999984      33444 46789999999999999999  9999999843

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.6e-30  Score=218.99  Aligned_cols=167  Identities=20%  Similarity=0.273  Sum_probs=96.0

Q ss_pred             HHHHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCc--ccccCCCCCcHHHHHHHCCCHHHHHHHHHc-----------
Q 046832           11 IFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDL--AHEVNQDGFSPMHIASSIGHTGVVRELLKV-----------   77 (328)
Q Consensus        11 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~-----------   77 (328)
                      +.+++.+|.+|+||||+|+..|+.+++++|+++++++  ....|..|.+|+|+++..+..++++.++..           
T Consensus        24 ~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (229)
T d1ixva_          24 PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN  103 (229)
T ss_dssp             GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCT
T ss_pred             CCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4456777888888888888888888888888877654  233455666666666655555544444443           


Q ss_pred             ------------------------CccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHc
Q 046832           78 ------------------------EQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKN  133 (328)
Q Consensus        78 ------------------------~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  133 (328)
                                              +... ..+|.+|.||||+|+..|+.++++.|++.++..++.+|.+|+||||+|+++
T Consensus       104 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~  182 (229)
T d1ixva_         104 QGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE  182 (229)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHT
T ss_pred             ccccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhccc
Confidence                                    3333 444555555555555555555555555555444555555555555555555


Q ss_pred             CChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchhHHhhcCCC
Q 046832          134 NQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKELLLGHGT  184 (328)
Q Consensus       134 ~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~~~Ll~~ga  184 (328)
                      |+.+++++|++.     .|++++.+|.+|+||||+|+.. ...++|+++|+
T Consensus       183 ~~~~~v~~Ll~~-----~gad~~~~d~~g~t~l~~A~~~-~~~~~Ll~~g~  227 (229)
T d1ixva_         183 GHGDAAVLLVEK-----YGAEYDLVDNKGAKAEDVALNE-QVKKFFLNNVV  227 (229)
T ss_dssp             TCHHHHHHHHHH-----HCCCSCCCCTTSCCTGGGCSCH-HHHHHHHHHCC
T ss_pred             ccHHHHHHHHHh-----cCCCCCCcCCCCCCHHHHHhhH-HHHHHHHHcCC
Confidence            555555555541     3445555555555555555432 11145555554

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.6e-30  Score=201.62  Aligned_cols=152  Identities=20%  Similarity=0.298  Sum_probs=143.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcH
Q 046832           23 NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKV  102 (328)
Q Consensus        23 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~  102 (328)
                      +|||+||..|+.++++.|+++|+++ +.+|.+|+||||+|+ .|+.+++++|+++++++ +.++.+|.+|++.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-ccccccccccccccccc-ccccccCccccccccccccc
Confidence            8999999999999999999999997 889999999999886 79999999999999998 89999999999999999999


Q ss_pred             HHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhh
Q 046832          103 HVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLL  180 (328)
Q Consensus       103 ~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll  180 (328)
                      +.++.+++.+.+ .+..|..|.+|+|+|++.++.+++++|+++     .+.+.+.+|.+|+||||+|++.++.+  ++|+
T Consensus        80 ~~~~~l~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-----~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll  153 (156)
T d1ihba_          80 DTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKH-----TASNVGHRNHKGDTACDLARLYGRNEVVSLMQ  153 (156)
T ss_dssp             HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-----SCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccccccc-cccccccccccccccccccccccccccccc-----ccccccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999887 788899999999999999999999999984     34578999999999999999999999  9999


Q ss_pred             cCC
Q 046832          181 GHG  183 (328)
Q Consensus       181 ~~g  183 (328)
                      ++|
T Consensus       154 ~~G  156 (156)
T d1ihba_         154 ANG  156 (156)
T ss_dssp             HTC
T ss_pred             hcC
Confidence            887

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=6.2e-30  Score=221.21  Aligned_cols=88  Identities=17%  Similarity=0.219  Sum_probs=61.8

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHH--------hcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCC
Q 046832           19 LRKGNPLHVASAYGHVDFVKEII--------NVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN   90 (328)
Q Consensus        19 ~~g~t~Lh~A~~~g~~~~v~~Ll--------~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~   90 (328)
                      ++|+||||+||..|+.++++.|+        +.|.++ +.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|.
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n~~~~~g~  108 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSER  108 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc-cccCCCCCeeecccccccccccccccccccccc-cccccccc
Confidence            45778888888877777776653        445666 667777888888888878888888888777776 66666677


Q ss_pred             CHHHHHHHcCcHHHHHHH
Q 046832           91 TPLHCAAIKGKVHVLSEM  108 (328)
Q Consensus        91 tpLh~Aa~~g~~~~v~~L  108 (328)
                      ||+++|...++.++++.+
T Consensus       109 t~l~~a~~~~~~~~~~~l  126 (277)
T d2fo1e1         109 SALHQAAANRDFGMMVYM  126 (277)
T ss_dssp             CHHHHHHHTTCHHHHHHH
T ss_pred             ccccchhhhcchhhhhhh
Confidence            777776666665444444

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.2e-29  Score=198.95  Aligned_cols=151  Identities=24%  Similarity=0.357  Sum_probs=139.0

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCc
Q 046832           22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGK  101 (328)
Q Consensus        22 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~  101 (328)
                      .+.||.||..|+.++++.|+++++...+..|..|+||||+|+ .|+.+++++|++++.++ +.++.+|.+|++.++..++
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccc-ccccccccccccccccccc
Confidence            356999999999999999999866555899999999999987 58999999999999998 8899999999999999999


Q ss_pred             HHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHh
Q 046832          102 VHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELL  179 (328)
Q Consensus       102 ~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~L  179 (328)
                      .++++.+++.+++ ++.+|..|+||||+|++.|+.+++++|++       +++++.+|.+|+||||+|+..|+.+  ++|
T Consensus        81 ~~~~~~~l~~~~~-~n~~~~~~~t~L~~A~~~~~~~i~~~L~~-------~~~~~~~d~~G~TpL~~A~~~g~~~iv~~L  152 (156)
T d1bd8a_          81 LDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAA-------ESDLHRRDARGLTPLELALQRGAQDLVDIL  152 (156)
T ss_dssp             HHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHT-------TSCTTCCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred             ccccccccccccc-cccccCCCCeeeccccccccccccccccc-------cccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999987 78899999999999999999999998873       5778999999999999999999999  888


Q ss_pred             hcC
Q 046832          180 LGH  182 (328)
Q Consensus       180 l~~  182 (328)
                      ++|
T Consensus       153 l~h  155 (156)
T d1bd8a_         153 QGH  155 (156)
T ss_dssp             HTT
T ss_pred             Hhh
Confidence            875

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.5e-28  Score=205.27  Aligned_cols=156  Identities=23%  Similarity=0.320  Sum_probs=144.2

Q ss_pred             hccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHH
Q 046832           16 LKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHC   95 (328)
Q Consensus        16 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~   95 (328)
                      ..+..+.++++.++..|+.++++.|++++.++ +..|.+|.||||+|+..|+.+++++|+++|.++ +.+|.+|.||||+
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~  142 (223)
T d1uoha_          65 DKDDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHR  142 (223)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             cccccccccccccccccccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchh
Confidence            45667889999999999999999999999987 889999999999999999999999999999998 8999999999999


Q ss_pred             HHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccch
Q 046832           96 AAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQR  175 (328)
Q Consensus        96 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~  175 (328)
                      |+..|+.++++.|++.+.+ ++..|..|+||||+|+++|+.+++++|++      .|++++.+|.+|+||||+|. .++.
T Consensus       143 a~~~~~~~~~~~L~~~~~~-i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~------~Gad~~~~d~~g~tpl~~A~-~~~~  214 (223)
T d1uoha_         143 AAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVS------QGASIYIENKEEKTPLQVAK-GGLG  214 (223)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHH------TTCCSCCCCTTSCCHHHHCC-TTHH
T ss_pred             hhhcCCcchhhhhccccce-eeeccCCCCceeccccccCcHHHHHHHHH------CCCCCCCCCCCCCCHHHHHH-CCCH
Confidence            9999999999999999888 89999999999999999999999999998      68889999999999999984 4665


Q ss_pred             h--HHhhc
Q 046832          176 K--ELLLG  181 (328)
Q Consensus       176 ~--~~Ll~  181 (328)
                      +  ++|++
T Consensus       215 ~i~~~Ll~  222 (223)
T d1uoha_         215 LILKRMVE  222 (223)
T ss_dssp             HHHHHHHC
T ss_pred             HHHhcccC
Confidence            5  66653

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.4e-28  Score=203.07  Aligned_cols=158  Identities=21%  Similarity=0.240  Sum_probs=110.7

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHh----cCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHH
Q 046832           19 LRKGNPLHVASAYGHVDFVKEIIN----VRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLH   94 (328)
Q Consensus        19 ~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh   94 (328)
                      ++|+||||+||..|+.++++.|++    .+.++ +.+|.+|+||||+|+..|+.+++++|+++|++. +..+..|.++++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~   78 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAH   78 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhcccccccccccccccccc-cccccccccccc
Confidence            479999999999999999999885    56676 889999999999999999999999999998876 555665666666


Q ss_pred             HHHHcCcHHHHHHHHHh-------------------------------------CCcccccccCCCCCHHHHHHHcCChh
Q 046832           95 CAAIKGKVHVLSEMLSA-------------------------------------CPECIEDVTIQHDTALHLAIKNNQFE  137 (328)
Q Consensus        95 ~Aa~~g~~~~v~~Ll~~-------------------------------------~~~~~~~~~~~g~t~Lh~A~~~~~~~  137 (328)
                      .|...++.++++.+...                                     ..+.....+..|.++|+.|++.+..+
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  158 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS  158 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhh
Confidence            65555554444443321                                     11212233345566666666666666


Q ss_pred             hHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcCCC
Q 046832          138 AITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGT  184 (328)
Q Consensus       138 ~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga  184 (328)
                      +++.+++      .+...+.+|.+|+||||+|+..|+.+  ++|+++|+
T Consensus       159 ~~~~~~~------~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Ga  201 (228)
T d1k1aa_         159 MVQLLLQ------HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA  201 (228)
T ss_dssp             HHHHHHH------TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             hhhhhhh------hccccccccccCcchHHHHHHcCCHHHHHHHHHCCC
Confidence            6666665      34555666666666666666666666  66666666

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.8e-28  Score=205.65  Aligned_cols=165  Identities=19%  Similarity=0.218  Sum_probs=144.6

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccc-----cccCCC
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL-----CHQQGP   87 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~-----~~~~~~   87 (328)
                      .++.+|.+|+||||+|+..|+.+++++|++.|.++ +.+|..|.||||+|+..|+.++++.|++.+...     ......
T Consensus        31 ~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  109 (221)
T d1iknd_          31 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY  109 (221)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCT
T ss_pred             CcccCCCCCCccccccccccccccccccccccccc-cccccccccccccccccccccccchhhhhccccccccccccccc
Confidence            46788999999999999999999999999999988 888999999999999999999999999876432     244556


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhh
Q 046832           88 EKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLH  167 (328)
Q Consensus        88 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh  167 (328)
                      +|.||+|.|+..|+.+.+++++..++......+.+|+||||+|++.|+.+++++|++      .|++++.+|.+|+||||
T Consensus       110 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~------~gad~~~~~~~G~tpl~  183 (221)
T d1iknd_         110 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK------CGADVNRVTYQGYSPYQ  183 (221)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHT------TTCCSCCCCTTCCCGGG
T ss_pred             ccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHh------cCCcccccCCCCCCHHH
Confidence            789999999999999999999999888444556789999999999999999999997      67889999999999999


Q ss_pred             HHhhccchh--HHhhcCCC
Q 046832          168 LATRKKQRK--ELLLGHGT  184 (328)
Q Consensus       168 ~A~~~~~~~--~~Ll~~ga  184 (328)
                      +|+..++.+  ++|.+.+.
T Consensus       184 ~A~~~~~~~~~~~l~~~~~  202 (221)
T d1iknd_         184 LTWGRPSTRIQQQLGQLTL  202 (221)
T ss_dssp             GCTTSSCHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHHHcCC
Confidence            999998888  77877765

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3.4e-28  Score=191.95  Aligned_cols=149  Identities=23%  Similarity=0.337  Sum_probs=138.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcC
Q 046832           21 KGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKG  100 (328)
Q Consensus        21 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g  100 (328)
                      ..||||.||+.|+.++++.|+++|++. + .|..|+||||+|+..++.++++.++...... ...+..+.++++.++...
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCc-c-cccCCCccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            359999999999999999999999876 3 6999999999999999999999999988877 777888999999999999


Q ss_pred             cHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HH
Q 046832          101 KVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--EL  178 (328)
Q Consensus       101 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~  178 (328)
                      +.+.++.++..+.+ .+.+|.+|+||||+|+..|+.+++++|++      .|+++|.+|.+|+||||+|+.+|+.+  ++
T Consensus        79 ~~~~~~~l~~~~~~-~~~~~~~g~T~L~~A~~~g~~~iv~~ll~------~gad~~~~d~~g~Tpl~~A~~~g~~eiv~l  151 (153)
T d1awcb_          79 HANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIK------YGADVHTQSKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             CHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cceeeecccccCCc-cccccccCchHHHhhhhcchhheeeeccc------cccCCcccCCCCCCHHHHHHHcCCHHHHHh
Confidence            99999999999987 78889999999999999999999999998      67889999999999999999999988  65


Q ss_pred             h
Q 046832          179 L  179 (328)
Q Consensus       179 L  179 (328)
                      |
T Consensus       152 L  152 (153)
T d1awcb_         152 L  152 (153)
T ss_dssp             H
T ss_pred             C
Confidence            4

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=6.8e-28  Score=210.10  Aligned_cols=172  Identities=23%  Similarity=0.278  Sum_probs=149.0

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHH
Q 046832           19 LRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAI   98 (328)
Q Consensus        19 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~   98 (328)
                      .++.|+||.||..|+.++|++|+++|+++ +..|.+|+||||+|+..|+.+++++|++++.+. ...+..+.+||+.++.
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadv-n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~  115 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAAS  115 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCcHHHHHHhcCCceeeeeeccccccc-cccccccccccccccc
Confidence            34569999999999999999999999997 889999999999999999999999999999987 7888899999999999


Q ss_pred             cCcHHHHHHHHHhCCcc-----------------------------------------------------------cccc
Q 046832           99 KGKVHVLSEMLSACPEC-----------------------------------------------------------IEDV  119 (328)
Q Consensus        99 ~g~~~~v~~Ll~~~~~~-----------------------------------------------------------~~~~  119 (328)
                      .|+.++++.|++.+...                                                           ....
T Consensus       116 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (291)
T d1s70b_         116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH  195 (291)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             ccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccc
Confidence            99999999998765320                                                           1334


Q ss_pred             cCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcCCCCCCchhhHHHhhh
Q 046832          120 TIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTYSSGRLELIALHQ  197 (328)
Q Consensus       120 ~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~~~~~~~~~~~~  197 (328)
                      +..|.||||.|+..|+.++++.|++      .|+++|.+|.+|+||||+|+..|+.+  ++|+++|+      |++..+.
T Consensus       196 ~~~g~t~L~~a~~~~~~~~~~~Ll~------~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Ga------dv~~~d~  263 (291)
T d1s70b_         196 AKSGGTALHVAAAKGYTEVLKLLIQ------ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC------DMEAVNK  263 (291)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHT------TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCT
T ss_pred             cCCCCChhhHHHHcCChhhhccccc------ceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCC------CCCCcCC
Confidence            5678899999999999999999997      67889999999999999999999999  99999999      4445555


Q ss_pred             hcccCcc
Q 046832          198 QRQLDSR  204 (328)
Q Consensus       198 ~~~~~~~  204 (328)
                      .++++-+
T Consensus       264 ~G~TaL~  270 (291)
T d1s70b_         264 VGQTAFD  270 (291)
T ss_dssp             TSCCTTT
T ss_pred             CCCCHHH
Confidence            5555543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.4e-28  Score=208.21  Aligned_cols=162  Identities=25%  Similarity=0.322  Sum_probs=128.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccc------------------
Q 046832           20 RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL------------------   81 (328)
Q Consensus        20 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~------------------   81 (328)
                      +++|+||.|++.|+.|+++.|+++|+++....+..|+||||+|+..|+.+++++|++.+...                  
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            35678888888888888888888888774444557888888888888888888887765432                  


Q ss_pred             ---------------------------------------------------------cccCCCCCCCHHHHHHHcCcHHH
Q 046832           82 ---------------------------------------------------------CHQQGPEKNTPLHCAAIKGKVHV  104 (328)
Q Consensus        82 ---------------------------------------------------------~~~~~~~g~tpLh~Aa~~g~~~~  104 (328)
                                                                               ....+..|.||||+|+.+|+.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence                                                                     01122358889999998888887


Q ss_pred             HHHHHHhC--------------------------------------CcccccccCCCCCHHHHHHHcCChhhHHHHHHhh
Q 046832          105 LSEMLSAC--------------------------------------PECIEDVTIQHDTALHLAIKNNQFEAITVLVNWI  146 (328)
Q Consensus       105 v~~Ll~~~--------------------------------------~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~  146 (328)
                      +++|++..                                      ++ ++.+|..|+||||+|++.|+.+++++|++. 
T Consensus       164 ~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~-~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~-  241 (285)
T d1wdya_         164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQ-  241 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHS-
T ss_pred             HHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCC-CCccCCCCCCccchhhhcCcHHHHHHHHHc-
Confidence            77776542                                      22 355678899999999999999999999983 


Q ss_pred             hcCccccccccccCCCCchhhHHhhccchh--HHhhcCCCCCC
Q 046832          147 RGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTYSS  187 (328)
Q Consensus       147 ~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~~  187 (328)
                          .|.++|.+|.+|+||||+|++.++.+  ++|+++||+.+
T Consensus       242 ----~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         242 ----EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             ----SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             ----CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence                58899999999999999999999999  99999999654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=5.8e-27  Score=194.18  Aligned_cols=161  Identities=19%  Similarity=0.290  Sum_probs=142.4

Q ss_pred             HHHHHhh-ccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHH------------------
Q 046832           10 FIFLVKL-KALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGV------------------   70 (328)
Q Consensus        10 ~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~i------------------   70 (328)
                      -..+++. .|.+|+||||+||..|+.|++++|++.++++ +.+|..+.++++.++..++...                  
T Consensus        11 ~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (209)
T d1ot8a_          11 QGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHD   89 (209)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTT
T ss_pred             CCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-cccccccccccccccccccccccccccccccccccccccc
Confidence            3446766 5899999999999999999999999999987 8888999999999887764443                  


Q ss_pred             ----------------HHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcC
Q 046832           71 ----------------VRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN  134 (328)
Q Consensus        71 ----------------v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~  134 (328)
                                      .+.|.+.+.++ +.++..|.|||+.++..|..++++.+++.+.+ ++..|..|.||||+|+.+|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g~TpL~~A~~~g  167 (209)
T d1ot8a_          90 GTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREG  167 (209)
T ss_dssp             CCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred             ccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecccccc-ccccccccccccchhcccc
Confidence                            44566667766 78899999999999999999999999999887 7889999999999999999


Q ss_pred             ChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHh
Q 046832          135 QFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELL  179 (328)
Q Consensus       135 ~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~L  179 (328)
                      +.+++++|++      .|+++|.+|.+|+||||+|+++|+.+  ++|
T Consensus       168 ~~~~v~~Ll~------~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         168 SYEASKALLD------NFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHH------CCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999998      67889999999999999999999988  654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.2e-28  Score=202.86  Aligned_cols=169  Identities=22%  Similarity=0.237  Sum_probs=139.4

Q ss_pred             CCChHHHHHHHcCCHHHHH----HHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHH
Q 046832           20 RKGNPLHVASAYGHVDFVK----EIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHC   95 (328)
Q Consensus        20 ~g~t~Lh~A~~~g~~~~v~----~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~   95 (328)
                      +|+||||+|+..|+.++++    .+...+.++ +.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||.
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-n~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~   78 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHL   78 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-ccCCCCCCccccccccccccccccccccccccc-ccccccccccccc
Confidence            6999999999999975544    455566666 889999999999999999999999999999998 8999999999999


Q ss_pred             HHHcCcHHHHHHHHHhCCc-----ccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccc-cCCCCchhhHH
Q 046832           96 AAIKGKVHVLSEMLSACPE-----CIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMK-DEQGNTVLHLA  169 (328)
Q Consensus        96 Aa~~g~~~~v~~Ll~~~~~-----~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-d~~G~T~Lh~A  169 (328)
                      ++..|+.++++.+++.+..     ........|.||||.|+..++.+++++|++      .+..++.+ |.+|+||||+|
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~------~~~~~~~~~~~~G~T~L~~A  152 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS------LGADVNAQEPCNGRTALHLA  152 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH------HTCCTTCCCTTTCCCHHHHH
T ss_pred             ccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecc------cCcccccccccCCCCccccc
Confidence            9999999999999987543     233444568899999999999999999998      45555554 46899999999


Q ss_pred             hhccchh--HHhhcCCCCCCchhhHHHhhhhcccC
Q 046832          170 TRKKQRK--ELLLGHGTYSSGRLELIALHQQRQLD  202 (328)
Q Consensus       170 ~~~~~~~--~~Ll~~ga~~~~~~~~~~~~~~~~~~  202 (328)
                      ++.|+.+  ++|+++|++      ++..+.++.++
T Consensus       153 ~~~g~~~~v~~Ll~~gad------~~~~~~~G~tp  181 (221)
T d1iknd_         153 VDLQNPDLVSLLLKCGAD------VNRVTYQGYSP  181 (221)
T ss_dssp             HHTTCHHHHHHHHTTTCC------SCCCCTTCCCG
T ss_pred             cccccHHHHHHHHhcCCc------ccccCCCCCCH
Confidence            9999999  999999994      44445554444

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.94  E-value=2.1e-26  Score=200.51  Aligned_cols=150  Identities=23%  Similarity=0.300  Sum_probs=136.5

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccc------------
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL------------   81 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~------------   81 (328)
                      ++.+|.+|.||||+|+..|+.+++++|++++.+. ...+..+.||||.|+..|+.++++.|++++...            
T Consensus        66 vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  144 (291)
T d1s70b_          66 INYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD  144 (291)
T ss_dssp             TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCccCCCCCcHHHHHHhcCCceeeeeeccccccc-ccccccccccccccccccccchhhcccccCcccccccccCccccc
Confidence            4678999999999999999999999999999887 777889999999999999999999999876533            


Q ss_pred             -----------------------------------------------cccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCc
Q 046832           82 -----------------------------------------------CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPE  114 (328)
Q Consensus        82 -----------------------------------------------~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  114 (328)
                                                                     ....+..|.||||.|+..|+.++++.|++.+++
T Consensus       145 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d  224 (291)
T d1s70b_         145 IAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD  224 (291)
T ss_dssp             HCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred             cccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceec
Confidence                                                           123456789999999999999999999999987


Q ss_pred             ccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhh
Q 046832          115 CIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATR  171 (328)
Q Consensus       115 ~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~  171 (328)
                       ++.++..|+||||+|++.|+.+++++|++      .|+++|.+|.+|+||||+|++
T Consensus       225 -in~~~~~g~TpL~~A~~~g~~~iv~lLl~------~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         225 -VNIKDYDGWTPLHAAAHWGKEEACRILVE------NLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             -TTCCCTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCTTTSCCS
T ss_pred             -ccccccCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCCHHHHHHH
Confidence             88899999999999999999999999998      688899999999999999975

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=4.2e-28  Score=217.17  Aligned_cols=135  Identities=15%  Similarity=0.155  Sum_probs=112.6

Q ss_pred             HHHHhhccCCCChHHHHHHHcCCHHHHHH---HHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCC-
Q 046832           11 IFLVKLKALRKGNPLHVASAYGHVDFVKE---IINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQG-   86 (328)
Q Consensus        11 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~---Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~-   86 (328)
                      ...++.++..|.||||+||++|+.++++.   |++.+.++ +.+|.+|+||||+||+.||.++|++|+++|+++ +..+ 
T Consensus        80 ~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~  157 (346)
T d2ajaa1          80 WSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMI  157 (346)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHH
T ss_pred             hhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-ccccc
Confidence            44567889999999999999999887766   67888877 889999999999999999999999999999987 5544 


Q ss_pred             -CCCCCHHHHHHHcCcHHHHHHHHHhCCcc--cccccCCCCCHHHHHHHcCChhhHHHHHHhhh
Q 046832           87 -PEKNTPLHCAAIKGKVHVLSEMLSACPEC--IEDVTIQHDTALHLAIKNNQFEAITVLVNWIR  147 (328)
Q Consensus        87 -~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~--~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~  147 (328)
                       .+|.||||+|+.+|+.+++++|++.++..  .+..+.+|.||+|.|+++|+.+++++|++.++
T Consensus       158 ~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga  221 (346)
T d2ajaa1         158 QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV  221 (346)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred             ccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCC
Confidence             56999999999999999999999998763  23344567788889999999999999987653

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.4e-26  Score=203.40  Aligned_cols=142  Identities=14%  Similarity=0.152  Sum_probs=114.6

Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCH-------HHHHHHHHcCccccccCCCCCC
Q 046832           18 ALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHT-------GVVRELLKVEQKLCHQQGPEKN   90 (328)
Q Consensus        18 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~-------~iv~~Ll~~~~~~~~~~~~~g~   90 (328)
                      |.+|+||||+||..|+.++++.|+++|+++ +.+|..|+||||.|+..++.       ++++++.+   .. ...|..|+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~-~~~d~~g~  178 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CL-ILEDSMNR  178 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GG-GEECTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hh-hhcccccC
Confidence            889999999999999999999999999998 88999999999999987753       34444332   23 66789999


Q ss_pred             CHHHHHHHcCc----HH--------HHHHHHHhCCc------------------------------------ccccccCC
Q 046832           91 TPLHCAAIKGK----VH--------VLSEMLSACPE------------------------------------CIEDVTIQ  122 (328)
Q Consensus        91 tpLh~Aa~~g~----~~--------~v~~Ll~~~~~------------------------------------~~~~~~~~  122 (328)
                      ||||.++..+.    .+        +++++.+.+..                                    .++.+|.+
T Consensus       179 t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~  258 (301)
T d1sw6a_         179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN  258 (301)
T ss_dssp             CHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTT
T ss_pred             CHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCC
Confidence            99998886554    22        23334333221                                    14667889


Q ss_pred             CCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHh
Q 046832          123 HDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLAT  170 (328)
Q Consensus       123 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~  170 (328)
                      |+||||+|+++|+.+++++|++      .|++++.+|++|+||||+|+
T Consensus       259 G~TpLh~A~~~g~~~iv~~Ll~------~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         259 GDTCLNIAARLGNISIVDALLD------YGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHH------TTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCCHHHHcC
Confidence            9999999999999999999998      68889999999999999986

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.6e-26  Score=176.30  Aligned_cols=121  Identities=20%  Similarity=0.221  Sum_probs=110.0

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCC-CHHHHHHH
Q 046832           20 RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-TPLHCAAI   98 (328)
Q Consensus        20 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~-tpLh~Aa~   98 (328)
                      .+.++||.|++.|+.+++++|+++|.++ +.+|.+|.||||+|+ .|+.+++++|+++|+++ +.++..|. ||||+|++
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAR   78 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-ccccccccccccccccc-ccccccccccccccccc
Confidence            4678999999999999999999999887 889999999999764 79999999999999998 77777765 69999999


Q ss_pred             cCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHH
Q 046832           99 KGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVN  144 (328)
Q Consensus        99 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~  144 (328)
                      .|+.+++++|++.|++ ++.+|..|+||||+|+++|+.+++++|++
T Consensus        79 ~g~~~~v~~Ll~~ga~-~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          79 EGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccc-cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999887 88899999999999999999999999964

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.9e-25  Score=201.98  Aligned_cols=158  Identities=30%  Similarity=0.437  Sum_probs=142.8

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCc
Q 046832           22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGK  101 (328)
Q Consensus        22 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~  101 (328)
                      .||||.||..|+.++|+.|+++|.++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~i-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi-~~~~~~g~t~L~~A~~~g~   78 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGH   78 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS-CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHTC
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCC
Confidence            49999999999999999999999988 889999999999999999999999999999998 8999999999999999999


Q ss_pred             HHHHHHHHHhCCc--------------------------------ccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcC
Q 046832          102 VHVLSEMLSACPE--------------------------------CIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGM  149 (328)
Q Consensus       102 ~~~v~~Ll~~~~~--------------------------------~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~  149 (328)
                      .++++.|+..+++                                .....+..+.++++.|+..++.+++++|++     
T Consensus        79 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~-----  153 (408)
T d1n11a_          79 TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE-----  153 (408)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-----
T ss_pred             HHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHH-----
Confidence            9999999876543                                124456778899999999999999999998     


Q ss_pred             ccccccccccCCCCchhhHHhhccchh--HHhhcCCCCCC
Q 046832          150 KREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTYSS  187 (328)
Q Consensus       150 ~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~~  187 (328)
                       .+.+++..|.+|.+|||+|+..++.+  ++|+.+|+...
T Consensus       154 -~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~  192 (408)
T d1n11a_         154 -RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH  192 (408)
T ss_dssp             -TTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC
T ss_pred             -cCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCccc
Confidence             57788999999999999999999988  89999988543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.6e-25  Score=202.23  Aligned_cols=160  Identities=22%  Similarity=0.337  Sum_probs=143.0

Q ss_pred             hccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHH
Q 046832           16 LKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHC   95 (328)
Q Consensus        16 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~   95 (328)
                      .++..|.||||.|+..++.++++.+++.+... +..|..|.||||.|+..++.+++++|+++|+++ +..+..+.||||.
T Consensus       226 ~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~~~t~L~~  303 (408)
T d1n11a_         226 AESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHV  303 (408)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHH
T ss_pred             ccCCCCCCHHHHHHHhCcHhHhhhhhcccccc-ccccCCCCChhhhhhhcCcHHHHHHHHHCCCcc-ccccccccccchh
Confidence            45778889999999999999999999988776 778889999999999999999999999999988 8888899999999


Q ss_pred             HHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccch
Q 046832           96 AAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQR  175 (328)
Q Consensus        96 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~  175 (328)
                      ++..++.++++++++.+.+ ++.+|.+|+||||+|+++|+.+++++|++      .|+++|.+|.+|+||||+|+++|+.
T Consensus       304 ~~~~~~~~~~~~ll~~g~~-in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~------~GAd~n~~d~~G~t~L~~A~~~~~~  376 (408)
T d1n11a_         304 ASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLK------NGASPNEVSSDGTTPLAIAKRLGYI  376 (408)
T ss_dssp             HHHSSCSHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCSCCCCSSSCCHHHHHHHTTCH
T ss_pred             hcccCcceeeeeecccccc-ccccCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            9999999999999999887 88899999999999999999999999998      6788999999999999999999988


Q ss_pred             h--H---HhhcCCC
Q 046832          176 K--E---LLLGHGT  184 (328)
Q Consensus       176 ~--~---~Ll~~ga  184 (328)
                      +  +   .+..+++
T Consensus       377 ~iv~~L~~~~~~~~  390 (408)
T d1n11a_         377 SVTDVLKVVTDETS  390 (408)
T ss_dssp             HHHHHHHHHCCCCS
T ss_pred             HHHHHHHHHHhccc
Confidence            7  3   4445554

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=9e-27  Score=175.80  Aligned_cols=105  Identities=20%  Similarity=0.249  Sum_probs=69.3

Q ss_pred             cHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCh
Q 046832           57 SPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQF  136 (328)
Q Consensus        57 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~  136 (328)
                      |||++|++.|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.++++++++.+++ ++.+|..|+||||+|+++|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d-in~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT-TTCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccccccce-eeecccccccchhhhhhcCch
Confidence            5666666666666666666666665 56666666666666666666666666666665 566666666666666666666


Q ss_pred             hhHHHHHHhhhcCccccccccccCCCCchhhHH
Q 046832          137 EAITVLVNWIRGMKREEIFNMKDEQGNTVLHLA  169 (328)
Q Consensus       137 ~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A  169 (328)
                      +++++|++      .|++++.+|.+|+||||+|
T Consensus        82 ~~v~~Ll~------~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLS------KGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHT------TCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhhc------ccccceeeCCCCCCHHHHH
Confidence            66666665      4566666777777777766

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=6.3e-26  Score=171.08  Aligned_cols=106  Identities=23%  Similarity=0.266  Sum_probs=102.5

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCc
Q 046832           22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGK  101 (328)
Q Consensus        22 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~  101 (328)
                      +|||++|++.|+.++++.|+++|.++ +.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-cccccccccccccccccccccccccccccccee-eecccccccchhhhhhcCc
Confidence            58999999999999999999999987 889999999999999999999999999999998 8999999999999999999


Q ss_pred             HHHHHHHHHhCCcccccccCCCCCHHHHH
Q 046832          102 VHVLSEMLSACPECIEDVTIQHDTALHLA  130 (328)
Q Consensus       102 ~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A  130 (328)
                      .+++++|+++|++ ++.+|.+|+||||+|
T Consensus        81 ~~~v~~Ll~~Gad-~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          81 VSCVKLLLSKGAD-KTVKGPDGLTALEAT  108 (118)
T ss_dssp             CHHHHHHHTTCCC-SSSSSSSTCCCCCTC
T ss_pred             hhhhhhhhccccc-ceeeCCCCCCHHHHH
Confidence            9999999999988 899999999999998

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.1e-25  Score=168.16  Aligned_cols=120  Identities=25%  Similarity=0.310  Sum_probs=109.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcH
Q 046832           23 NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKV  102 (328)
Q Consensus        23 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~  102 (328)
                      ++||.||..|+.++++.|+++|.++ +.+|.+|+||||+|+..|+.+++++|++.|++. +.+|.+|+||||+|+..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-ccccccccccccccccccccccccccccccccc-ccccccCcccccccchhhHH
Confidence            6899999999999999999999997 899999999999999999999999999999998 89999999999999999999


Q ss_pred             HHHHHHHHhCCccccccc-CCCCCHHHHH--HHcCChhhHHHHHHh
Q 046832          103 HVLSEMLSACPECIEDVT-IQHDTALHLA--IKNNQFEAITVLVNW  145 (328)
Q Consensus       103 ~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~A--~~~~~~~~~~~Ll~~  145 (328)
                      +++++|+++|++ ++..+ ..|+|+++++  .++|+.+++++|++.
T Consensus        81 ~~v~~Ll~~ga~-v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          81 QVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHcCCC-cccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            999999999988 56555 4588887765  577899999999873

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.5e-25  Score=169.54  Aligned_cols=119  Identities=18%  Similarity=0.197  Sum_probs=108.9

Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCC-CHHHHHHH
Q 046832           54 DGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD-TALHLAIK  132 (328)
Q Consensus        54 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~-t~Lh~A~~  132 (328)
                      .+.++||+|+..|+.+++++|+++|+++ +.+|.+|.||+|.|+ .|+.+++++|++++++ ++..+..|. ||||+|++
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVHDAAR   78 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-cccccccccccccccc-cccccccccccccccccc
Confidence            3578999999999999999999999998 899999999999775 7999999999999988 777777765 69999999


Q ss_pred             cCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhc
Q 046832          133 NNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLG  181 (328)
Q Consensus       133 ~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~  181 (328)
                      +|+.+++++|++      .|++++.+|.+|+||||+|++.|+.+  ++|++
T Consensus        79 ~g~~~~v~~Ll~------~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          79 EGFLDTLVVLHR------AGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCHHHHHHHHH------HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccc------cccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999998      67889999999999999999999998  77764

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-24  Score=172.08  Aligned_cols=128  Identities=18%  Similarity=0.242  Sum_probs=117.7

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCH
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTP   92 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp   92 (328)
                      .++.+|..|+||||+|+ .|+.+++++|++++.++ +..+.+|.+|++.++..++.++++.++++++++ +.+|.+|.||
T Consensus        28 ~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~-n~~~~~~~t~  104 (156)
T d1bd8a_          28 HPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALP  104 (156)
T ss_dssp             CTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCH
T ss_pred             CCCccCCCCCccccccc-ccccccccccccccccc-ccccccccccccccccccccccccccccccccc-ccccCCCCee
Confidence            34577999999999987 58999999999999987 788899999999999999999999999999998 8899999999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHh
Q 046832           93 LHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNW  145 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~  145 (328)
                      ||+|+..|+.+++++|+ .+++ ++.+|.+|+||||+|+++|+.+++++|+++
T Consensus       105 L~~A~~~~~~~i~~~L~-~~~~-~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         105 IHLAVQEGHTAVVSFLA-AESD-LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTCHHHHHHHH-TTSC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ecccccccccccccccc-cccc-ccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            99999999999999887 5565 788999999999999999999999999874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=5.5e-23  Score=161.83  Aligned_cols=123  Identities=17%  Similarity=0.154  Sum_probs=110.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCcccc-----cCCCCCcHHHHHHHC---CCHHHHHHHHHcCccccccCCCCCCCHHH
Q 046832           23 NPLHVASAYGHVDFVKEIINVRPDLAHE-----VNQDGFSPMHIASSI---GHTGVVRELLKVEQKLCHQQGPEKNTPLH   94 (328)
Q Consensus        23 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-----~d~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh   94 (328)
                      ..|+.|++.++++.+..++..+.++...     .+..|+||||+|+..   |+.+++++|+++|+++ +.+|.+|.||||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh   86 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhccccc
Confidence            3466888999999999999988765322     367899999999974   7889999999999998 999999999999


Q ss_pred             HHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhh
Q 046832           95 CAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIR  147 (328)
Q Consensus        95 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~  147 (328)
                      +|+..|+.+++++|+++|++ ++.+|.+|+||||+|+++|+.+++++|++.+.
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccccccccCcc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            99999999999999999988 88999999999999999999999999998644

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.3e-23  Score=164.35  Aligned_cols=130  Identities=20%  Similarity=0.276  Sum_probs=122.5

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCH
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTP   92 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp   92 (328)
                      +++.+|..|.||||+|+ .|+.|++++|++++.++ +..+..|.+|++.++..++.+.++.|++.+.+. +..|..|.+|
T Consensus        26 d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~  102 (156)
T d1ihba_          26 NVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLP  102 (156)
T ss_dssp             CTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred             CcCccCCcccccccccc-ccccccccccccccccc-ccccccCcccccccccccccccccccccccccc-cccccccccc
Confidence            35778999999999886 79999999999999987 888999999999999999999999999999988 8899999999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHh
Q 046832           93 LHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNW  145 (328)
Q Consensus        93 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~  145 (328)
                      +|+|+..|+.++++.|+++++...+.+|..|+||||+|+++++.+++++|+++
T Consensus       103 l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_         103 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999999999999977889999999999999999999999999984

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=8.1e-24  Score=174.96  Aligned_cols=144  Identities=22%  Similarity=0.356  Sum_probs=126.3

Q ss_pred             HHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHH----------
Q 046832           34 VDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVH----------  103 (328)
Q Consensus        34 ~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~----------  103 (328)
                      .|+|+.|+++|+++....|.+|.||||+||+.|+.+++++|++.|+++ +.++..+.++++.++..++.+          
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccccccccccccccccccccccccccccc
Confidence            589999999999984446999999999999999999999999999998 888999999999888766633          


Q ss_pred             ------------------------HHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCcccccccccc
Q 046832          104 ------------------------VLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKD  159 (328)
Q Consensus       104 ------------------------~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d  159 (328)
                                              ..+.|.+.+.+ ++.++..|+||||+++.+++.++++.+++      .+.+++.+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~~~~t~l~~~~~~~~~~~~~~l~~------~~~~~~~~d  153 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-INAADNSGKTALHWAAAVNNTEAVNILLM------HHANRDAQD  153 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH------TTCCTTCCC
T ss_pred             cccccccccccccccccccccchhhhhhhhhhccc-ccccCCCCCCcchhhcccCcceeeeeecc------ccccccccc
Confidence                                    34444555554 67888999999999999999999999998      567789999


Q ss_pred             CCCCchhhHHhhccchh--HHhhcCCCC
Q 046832          160 EQGNTVLHLATRKKQRK--ELLLGHGTY  185 (328)
Q Consensus       160 ~~G~T~Lh~A~~~~~~~--~~Ll~~ga~  185 (328)
                      .+|+||||+|+..|+.+  ++|+++|++
T Consensus       154 ~~g~TpL~~A~~~g~~~~v~~Ll~~gad  181 (209)
T d1ot8a_         154 DKDETPLFLAAREGSYEASKALLDNFAN  181 (209)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cccccccchhccccHHHHHHHHHHCCCC
Confidence            99999999999999999  999999984

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2e-23  Score=159.88  Aligned_cols=118  Identities=16%  Similarity=0.128  Sum_probs=105.8

Q ss_pred             cHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCh
Q 046832           57 SPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQF  136 (328)
Q Consensus        57 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~  136 (328)
                      ++||.||..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.+.+ .+..|.+|+||||+|+.+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-cccccccccccccccccccccccccccccccc-cccccccCcccccccchhhHH
Confidence            6899999999999999999999998 99999999999999999999999999999988 889999999999999999999


Q ss_pred             hhHHHHHHhhhcCccccccccccC-CCCchhhHH--hhccchh--HHhhcC
Q 046832          137 EAITVLVNWIRGMKREEIFNMKDE-QGNTVLHLA--TRKKQRK--ELLLGH  182 (328)
Q Consensus       137 ~~~~~Ll~~~~~~~~~~~~~~~d~-~G~T~Lh~A--~~~~~~~--~~Ll~~  182 (328)
                      +++++|++      .|++++.+|. +|+||++++  ...|+.+  ++|+..
T Consensus        81 ~~v~~Ll~------~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          81 QVCKFLVE------SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHH------TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHH------cCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            99999998      6778887764 588887765  4556666  777654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.89  E-value=8.6e-23  Score=175.78  Aligned_cols=163  Identities=16%  Similarity=0.173  Sum_probs=145.0

Q ss_pred             HHhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccc-----------
Q 046832           13 LVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL-----------   81 (328)
Q Consensus        13 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~-----------   81 (328)
                      +++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.++++.+...+...           
T Consensus        66 dvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  144 (277)
T d2fo1e1          66 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM  144 (277)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSC
T ss_pred             CccccCCCCCeeecccccccccccccccccccccc-ccccccccccccchhhhcchhhhhhhhhcccccccccccccccc
Confidence            46789999999999999999999999999999997 888999999999999999999988876642100           


Q ss_pred             -----------------------------------cccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCH
Q 046832           82 -----------------------------------CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTA  126 (328)
Q Consensus        82 -----------------------------------~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~  126 (328)
                                                         .+..+..|.||||+++..++.++++.++...+...+..|..|+||
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tp  224 (277)
T d2fo1e1         145 TALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTP  224 (277)
T ss_dssp             CHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCH
T ss_pred             hhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCH
Confidence                                               133556799999999999999999998887777688899999999


Q ss_pred             HHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcC
Q 046832          127 LHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGH  182 (328)
Q Consensus       127 Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~  182 (328)
                      ||+|++.|+.+++++|++      .|+++|.+|.+|+||||+|++.|+.+  ++|++.
T Consensus       225 L~~A~~~g~~~iv~~Ll~------~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         225 IMLAAQEGRIEVVMYLIQ------QGASVEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             HHHHHHHTCHHHHHHHHH------TTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHH------CcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999998      68889999999999999999999998  888753

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=2.7e-23  Score=174.25  Aligned_cols=126  Identities=17%  Similarity=0.147  Sum_probs=113.0

Q ss_pred             hccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHH
Q 046832           16 LKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHC   95 (328)
Q Consensus        16 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~   95 (328)
                      ..+..+.|+++.++..++.++++.|++.+.+. +..|.+|+||||+|+..|+.+++++|++.+....+.+|.+|.||||+
T Consensus       100 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~  178 (229)
T d1ixva_         100 KITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH  178 (229)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHH
T ss_pred             ccccccccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhcccccccccccccccccccccccccCCchhh
Confidence            45677889999999999999999999988777 77899999999999999999999999999866558999999999999


Q ss_pred             HHHcCcHHHHHHHHHh-CCcccccccCCCCCHHHHHHHcCChhhHHHHHHhh
Q 046832           96 AAIKGKVHVLSEMLSA-CPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWI  146 (328)
Q Consensus        96 Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~  146 (328)
                      |+.+|+.+++++|+++ |.+ ++.+|.+|+||||+|+.   .+++++|++.|
T Consensus       179 A~~~~~~~~v~~Ll~~~gad-~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g  226 (229)
T d1ixva_         179 ALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVALN---EQVKKFFLNNV  226 (229)
T ss_dssp             HHHTTCHHHHHHHHHHHCCC-SCCCCTTSCCTGGGCSC---HHHHHHHHHHC
T ss_pred             hcccccHHHHHHHHHhcCCC-CCCcCCCCCCHHHHHhh---HHHHHHHHHcC
Confidence            9999999999999985 666 89999999999999984   58999999843

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.9e-23  Score=181.91  Aligned_cols=152  Identities=20%  Similarity=0.207  Sum_probs=111.6

Q ss_pred             CCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHHHHcCcH---HHHHHHHHhCCccccccc
Q 046832           44 RPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKV---HVLSEMLSACPECIEDVT  120 (328)
Q Consensus        44 ~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~---~~v~~Ll~~~~~~~~~~~  120 (328)
                      +.++....|.+|+||||+||..|+.++|++|+++|+++ +.+|..|+||||.|+..++.   +.++.+++.........|
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d  174 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED  174 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcc
Confidence            33442234899999999999999999999999999998 89999999999999987753   223334443334467789


Q ss_pred             CCCCCHHHHHHHcCCh----hhH--------HHHHHhhhcCc-------------------------------ccccccc
Q 046832          121 IQHDTALHLAIKNNQF----EAI--------TVLVNWIRGMK-------------------------------REEIFNM  157 (328)
Q Consensus       121 ~~g~t~Lh~A~~~~~~----~~~--------~~Ll~~~~~~~-------------------------------~~~~~~~  157 (328)
                      ..|+||||.++..+..    .+.        +++.+......                               .+..+|.
T Consensus       175 ~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~  254 (301)
T d1sw6a_         175 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA  254 (301)
T ss_dssp             TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTC
T ss_pred             cccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccC
Confidence            9999999998865542    222        33333222110                               1223789


Q ss_pred             ccCCCCchhhHHhhccchh--HHhhcCCCCCCchhhHHHhhhhcccC
Q 046832          158 KDEQGNTVLHLATRKKQRK--ELLLGHGTYSSGRLELIALHQQRQLD  202 (328)
Q Consensus       158 ~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga~~~~~~~~~~~~~~~~~~  202 (328)
                      +|.+|+||||+|++.|+.+  ++|+++|+      +++..+..+.++
T Consensus       255 ~D~~G~TpLh~A~~~g~~~iv~~Ll~~GA------d~~~~n~~G~Tp  295 (301)
T d1sw6a_         255 QDSNGDTCLNIAARLGNISIVDALLDYGA------DPFIANKSGLRP  295 (301)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHHTTC------CTTCCCTTSCCG
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCC------CCCCCCCCCCCH
Confidence            9999999999999999999  99999999      444455555544

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.7e-22  Score=170.81  Aligned_cols=139  Identities=20%  Similarity=0.199  Sum_probs=122.4

Q ss_pred             HhhccCCCChHHHHHHHcCCHHHHHHHHhc-CCCcccccCCCCCcHHHHHHHCC----CHHHHHHHHHcCccccccCCCC
Q 046832           14 VKLKALRKGNPLHVASAYGHVDFVKEIINV-RPDLAHEVNQDGFSPMHIASSIG----HTGVVRELLKVEQKLCHQQGPE   88 (328)
Q Consensus        14 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~Aa~~g----~~~iv~~Ll~~~~~~~~~~~~~   88 (328)
                      .+..+..|.||||+|++.|+.+++++|+++ +.++ +..|..|.++++.+...+    ..+++++|+++|+++ +.+|.+
T Consensus       141 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~~~  218 (285)
T d1wdya_         141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGER  218 (285)
T ss_dssp             HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTT
T ss_pred             hhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCc-ccccCCCCcccccccccccchHHHHHHHHHHHCCCCC-CccCCC
Confidence            345677899999999999999999999986 4455 888999999888765543    457999999999998 889999


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccC
Q 046832           89 KNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDE  160 (328)
Q Consensus        89 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~  160 (328)
                      |.||||+|++.|+.+++++|++.++.+++.+|.+|+||||+|+++|+.+++++|++      .|+++|.+|.
T Consensus       219 g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~------~GAd~n~~d~  284 (285)
T d1wdya_         219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK------RGASTDCGDL  284 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH------HSSCSCCSSC
T ss_pred             CCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCcccC
Confidence            99999999999999999999997555589999999999999999999999999999      6778888773

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.1e-21  Score=153.99  Aligned_cols=123  Identities=23%  Similarity=0.341  Sum_probs=116.1

Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHCCCHHHHHHHHHcCccccccCCCCCCCHHHHH
Q 046832           17 KALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCA   96 (328)
Q Consensus        17 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A   96 (328)
                      .|..|+||||+|+..++.++++.++...... ...+..+.++++.++...+.++++++++++.+. +.+|.+|.||||+|
T Consensus        30 ~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~T~L~~A  107 (153)
T d1awcb_          30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWA  107 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHH
T ss_pred             cccCCCccccccccccccccccccccccccc-cccccccccccccccccccceeeecccccCCcc-ccccccCchHHHhh
Confidence            6889999999999999999999999987776 667788899999999999999999999999988 88999999999999


Q ss_pred             HHcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCChhhHHHH
Q 046832           97 AIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVL  142 (328)
Q Consensus        97 a~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~L  142 (328)
                      +..|+.+++++|++.+++ ++..|.+|+||||+|+.+|+.|++++|
T Consensus       108 ~~~g~~~iv~~ll~~gad-~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         108 TEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hhcchhheeeeccccccC-CcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            999999999999999987 888999999999999999999999977

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2e-21  Score=160.57  Aligned_cols=133  Identities=25%  Similarity=0.298  Sum_probs=109.7

Q ss_pred             CCCCcHHHHHHHCCCHHHHHHHHH----cCccccccCCCCCCCHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCCHHH
Q 046832           53 QDGFSPMHIASSIGHTGVVRELLK----VEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALH  128 (328)
Q Consensus        53 ~~g~tpLh~Aa~~g~~~iv~~Ll~----~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh  128 (328)
                      ++|+||||+||..|+.++++.|++    .|+++ +.+|.+|.||||+|+..|+.++++.|++.+++ .+..+..|.++++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~~   78 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDRHGQTAAH   78 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhccccccccccccccccc-ccccccccccccc
Confidence            379999999999999999998875    67787 89999999999999999999999999999887 7778888999999


Q ss_pred             HHHHcCChhhHHHHHHhhhcCc--------------------------------cccccccccCCCCchhhHHhhccchh
Q 046832          129 LAIKNNQFEAITVLVNWIRGMK--------------------------------REEIFNMKDEQGNTVLHLATRKKQRK  176 (328)
Q Consensus       129 ~A~~~~~~~~~~~Ll~~~~~~~--------------------------------~~~~~~~~d~~G~T~Lh~A~~~~~~~  176 (328)
                      .|...++.++++..........                                ........+..|++|||.|+..+...
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  158 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS  158 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhh
Confidence            9998888888777655322110                                12334567788999999999998888


Q ss_pred             --HHhhcCCCCCC
Q 046832          177 --ELLLGHGTYSS  187 (328)
Q Consensus       177 --~~Ll~~ga~~~  187 (328)
                        +.++++|....
T Consensus       159 ~~~~~~~~~~~~~  171 (228)
T d1k1aa_         159 MVQLLLQHGANVN  171 (228)
T ss_dssp             HHHHHHHTTCCTT
T ss_pred             hhhhhhhhccccc
Confidence              88888887443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.7e-21  Score=153.21  Aligned_cols=120  Identities=20%  Similarity=0.229  Sum_probs=106.6

Q ss_pred             HHHHHHHCCCHHHHHHHHHcCcccc-----ccCCCCCCCHHHHHHHc---CcHHHHHHHHHhCCcccccccCCCCCHHHH
Q 046832           58 PMHIASSIGHTGVVRELLKVEQKLC-----HQQGPEKNTPLHCAAIK---GKVHVLSEMLSACPECIEDVTIQHDTALHL  129 (328)
Q Consensus        58 pLh~Aa~~g~~~iv~~Ll~~~~~~~-----~~~~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  129 (328)
                      .|+.|++.++...+..++..|.+..     ...+..|.||||+|++.   |+.+++++|+++|++ ++.+|..|+||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-in~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-hhhhhhhhcccccc
Confidence            4567889999999999999887752     12367799999999974   678999999999988 89999999999999


Q ss_pred             HHHcCChhhHHHHHHhhhcCccccccccccCCCCchhhHHhhccchh--HHhhcCCC
Q 046832          130 AIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGT  184 (328)
Q Consensus       130 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~--~~Ll~~ga  184 (328)
                      |++.|+.+++++|++      .|++++.+|.+|+||||+|+..++.+  ++|++.++
T Consensus        88 A~~~~~~~~v~~Ll~------~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          88 CCLTDNAECLKLLLR------GKASIEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ccccccccccccccc------cCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            999999999999998      68889999999999999999999998  88888765

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.85  E-value=2.7e-24  Score=192.15  Aligned_cols=157  Identities=15%  Similarity=0.150  Sum_probs=120.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCC----------cccccCCCCCcHHHHHHHCCCHHHHHH---HHHcCccccccCCCCC
Q 046832           23 NPLHVASAYGHVDFVKEIINVRPD----------LAHEVNQDGFSPMHIASSIGHTGVVRE---LLKVEQKLCHQQGPEK   89 (328)
Q Consensus        23 t~Lh~A~~~g~~~~v~~Ll~~~~~----------~~~~~d~~g~tpLh~Aa~~g~~~iv~~---Ll~~~~~~~~~~~~~g   89 (328)
                      +.++.+...+..++.+.+...+.+          ..+.+|..|.||||+||+.|+.+++++   |++.|+++ +.+|.+|
T Consensus        48 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~~~g  126 (346)
T d2ajaa1          48 IHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAEN  126 (346)
T ss_dssp             HHHCCCCSSHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccCCCC
Confidence            334444444455666665543211          124567789999999999999887765   78899988 8899999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHHhCCccccccc--CCCCCHHHHHHHcCChhhHHHHHHhhhcCccccccccccCCCCchhh
Q 046832           90 NTPLHCAAIKGKVHVLSEMLSACPECIEDVT--IQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLH  167 (328)
Q Consensus        90 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~--~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~d~~G~T~Lh  167 (328)
                      .||||+||+.|+.++|++|++.+++ ++..+  .+|+||||+|+++|+.+++++|++.+..   ....+..+.+|.||+|
T Consensus       127 ~taL~~Aa~~G~~~~v~~Ll~~g~~-~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~---~~~~~~~~~~~~t~l~  202 (346)
T d2ajaa1         127 YQAFRLAAENGHLHVLNRLCELAPT-EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT---EATAMIQAENYYAFRW  202 (346)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCTT-THHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGG---GHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCC-ccccccccCCCChhHHHHHHhhHHHHHHHHHcCCc---ccccccccCCCcchhh
Confidence            9999999999999999999999987 55544  5689999999999999999999984322   1234556677888999


Q ss_pred             HHhhccchh--HHhhcCCC
Q 046832          168 LATRKKQRK--ELLLGHGT  184 (328)
Q Consensus       168 ~A~~~~~~~--~~Ll~~ga  184 (328)
                      .|+.+|+.+  ++|+++|+
T Consensus       203 ~A~~~g~~~iv~~Ll~~ga  221 (346)
T d2ajaa1         203 AAVGRGHHNVINFLLDCPV  221 (346)
T ss_dssp             HHSTTCCHHHHHHHTTSHH
T ss_pred             HHhhcCHHHHHHHHHhCCC
Confidence            999999999  99999998