Citrus Sinensis ID: 046870
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 236 | 2.2.26 [Sep-21-2011] | |||||||
| F4HUK6 | 556 | Probable acyl-activating | yes | no | 1.0 | 0.424 | 0.783 | 1e-112 | |
| Q9SEY5 | 603 | Probable acyl-activating | no | no | 0.966 | 0.378 | 0.694 | 6e-95 | |
| Q8VZF1 | 569 | Acetate/butyrate--CoA lig | no | no | 0.974 | 0.404 | 0.574 | 4e-81 | |
| Q9LQS1 | 544 | Probable acyl-activating | no | no | 0.949 | 0.411 | 0.581 | 1e-74 | |
| Q9FFE6 | 552 | Probable acyl-activating | no | no | 0.957 | 0.409 | 0.558 | 4e-73 | |
| Q9FFE9 | 550 | Probable acyl-activating | no | no | 0.953 | 0.409 | 0.557 | 2e-71 | |
| Q9C8D4 | 572 | Butyrate--CoA ligase AAE1 | no | no | 0.953 | 0.393 | 0.550 | 4e-71 | |
| Q9SS00 | 578 | Probable acyl-activating | no | no | 0.953 | 0.389 | 0.529 | 8e-70 | |
| Q9C9G2 | 535 | Probable acyl-activating | no | no | 0.953 | 0.420 | 0.525 | 1e-68 | |
| Q9LPK7 | 549 | Probable acyl-activating | no | no | 0.953 | 0.409 | 0.549 | 2e-68 |
| >sp|F4HUK6|AAE1_ARATH Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana GN=AAE1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust.
Identities = 185/236 (78%), Positives = 216/236 (91%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
MEELGF++ H+YGLTETYGPGT+C WKP+W+SLPREEQAK+KARQGV HLGL+EI +KDP
Sbjct: 321 MEELGFSMFHSYGLTETYGPGTICTWKPEWDSLPREEQAKMKARQGVNHLGLEEIQVKDP 380
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
VTM+++P+D T+GEV+FRGNTVMNGYLKN +AT++AF GGWF SGDLGV+HPDGYIELK
Sbjct: 381 VTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEATKEAFKGGWFWSGDLGVKHPDGYIELK 440
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DRSKDIIISGGENIS+IEVES LF+HP VLEAAVV RPD++WGET CAFVKLKDG A+
Sbjct: 441 DRSKDIIISGGENISSIEVESTLFTHPCVLEAAVVARPDEYWGETACAFVKLKDGSKASA 500
Query: 181 EEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKAMGSISKKGTSKL 236
EE+I+YCRDRLPHYMAPR++VFEDLPKTSTGK QK+VLR KAKA+ S+SKKG SKL
Sbjct: 501 EELISYCRDRLPHYMAPRSIVFEDLPKTSTGKVQKFVLRTKAKALVSLSKKGRSKL 556
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May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: - |
| >sp|Q9SEY5|AAE2_ARATH Probable acyl-activating enzyme 2 OS=Arabidopsis thaliana GN=AAE2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 346 bits (888), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 159/229 (69%), Positives = 194/229 (84%), Gaps = 1/229 (0%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
MEELGF ++H YGLTETYGPGT CVWKP+W+SL EE+ K+KARQGV HLGL+ +D+KDP
Sbjct: 375 MEELGFNVSHLYGLTETYGPGTHCVWKPEWDSLSLEERTKLKARQGVQHLGLEGLDVKDP 434
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
+TM++VP D T+GEVMFRGNTVM+GY K+++AT+ AF+G WF SGDL V++PDGYIE+K
Sbjct: 435 LTMETVPDDGLTMGEVMFRGNTVMSGYFKDIEATRKAFEGDWFHSGDLAVKYPDGYIEIK 494
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGC-VAN 179
DR KD+IISGGENIS++EVE VL SH +VLEAAVV RPD HWG+TPC FVKLK+G
Sbjct: 495 DRLKDVIISGGENISSVEVERVLCSHQAVLEAAVVARPDHHWGQTPCGFVKLKEGFDTIK 554
Query: 180 GEEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKAMGSI 228
EEII +CRD LPHYMAP+T+VF D+PKTSTGK QKY+LR+KA MGS+
Sbjct: 555 PEEIIGFCRDHLPHYMAPKTIVFGDIPKTSTGKVQKYLLRKKADEMGSL 603
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May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q8VZF1|AEE7_ARATH Acetate/butyrate--CoA ligase AAE7, peroxisomal OS=Arabidopsis thaliana GN=AAE7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (770), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 135/235 (57%), Positives = 180/235 (76%), Gaps = 5/235 (2%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
M + GF + H YGL+ETYGP TVC WKP+W+SLP E QAK+ ARQGV + G++++D+ D
Sbjct: 332 MNQKGFRVAHTYGLSETYGPSTVCAWKPEWDSLPPETQAKLNARQGVRYTGMEQLDVIDT 391
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
T K VP+D KT GE++FRGN VM GYLKN +A ++ F GGWF SGD+ V+HPD YIE+K
Sbjct: 392 QTGKPVPADGKTAGEIVFRGNMVMKGYLKNPEANKETFAGGWFHSGDIAVKHPDNYIEIK 451
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN- 179
DRSKD+IISGGENIS++EVE+V++ HP+VLEA+VV RPD+ W E+PCAFV LK +
Sbjct: 452 DRSKDVIISGGENISSVEVENVVYHHPAVLEASVVARPDERWQESPCAFVTLKSDYEKHD 511
Query: 180 ----GEEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKAMGSISK 230
++I+ +CR++LP Y P++VVF LPKT+TGK QK++LR KAK MG + +
Sbjct: 512 QNKLAQDIMKFCREKLPAYWVPKSVVFGPLPKTATGKIQKHILRTKAKEMGPVPR 566
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Peroxisomal acetate/butyrate--CoA ligase that is probably involved in the activation of exogenous acetate for entry into the glyoxylate cycle. May play a role to prevent carbon loss from peroxisomes during lipid mobilization. In vitro, is active with both acetate and butyrate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q9LQS1|AAE8_ARATH Probable acyl-activating enzyme 8 OS=Arabidopsis thaliana GN=AAE8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (714), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 132/227 (58%), Positives = 173/227 (76%), Gaps = 3/227 (1%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPV 61
E LGF ++H YGLTET G C WKP+WN LP +QA++K+RQGV +G EID+ DP
Sbjct: 318 ESLGFIVSHGYGLTETAGVIVSCAWKPNWNRLPASDQAQLKSRQGVRTVGFSEIDVVDPE 377
Query: 62 TMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKD 121
+ +SV D +T+GE++ RG+++M GYLKN TQ++F GWF +GDLGV H DGY+E+KD
Sbjct: 378 SGRSVERDGETVGEIVLRGSSIMLGYLKNPIGTQNSFKNGWFFTGDLGVIHGDGYLEIKD 437
Query: 122 RSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCV--AN 179
RSKD+IISGGEN+S++EVE+VL+++P+V EAAVV RPD+ WGETPCAFV LK G
Sbjct: 438 RSKDVIISGGENVSSVEVEAVLYTNPAVNEAAVVARPDEFWGETPCAFVSLKPGLTRKPT 497
Query: 180 GEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKAM 225
+EII YC+ ++P YMAP+TV F E+LPKTSTGK K +L+E AK M
Sbjct: 498 DKEIIEYCKYKMPRYMAPKTVSFLEELPKTSTGKIIKSLLKEIAKNM 544
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May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FFE6|AAE5_ARATH Probable acyl-activating enzyme 5, peroxisomal OS=Arabidopsis thaliana GN=AAE5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 274 bits (700), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 128/229 (55%), Positives = 168/229 (73%), Gaps = 3/229 (1%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPV 61
E +GF ++H YGLTET G C WKP WN LP ++A++KARQGV +G EID+ DP
Sbjct: 318 ESIGFVISHGYGLTETAGLNVSCAWKPQWNRLPASDRARLKARQGVRTVGFTEIDVVDPE 377
Query: 62 TMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKD 121
+ +SV + +T+GE++ RG+++M GYLK+ T+ A GWF +GD+GV H DGY+E+KD
Sbjct: 378 SGRSVERNGETVGEIVMRGSSIMLGYLKDPVGTEKALKNGWFYTGDVGVIHSDGYLEIKD 437
Query: 122 RSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGE 181
RSKDIII+GGEN+S++EVE+VL+++P+V E AVV RPD WGETPCAFV LK G
Sbjct: 438 RSKDIIITGGENVSSVEVETVLYTNPAVNEVAVVARPDVFWGETPCAFVSLKSGLTQRPT 497
Query: 182 EI--INYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGS 227
E+ I YCR ++P YM P+TV F D LPKTSTGK K+VLRE AK MG+
Sbjct: 498 EVEMIEYCRKKMPKYMVPKTVSFVDELPKTSTGKVMKFVLREIAKKMGT 546
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May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FFE9|AAE6_ARATH Probable acyl-activating enzyme 6 OS=Arabidopsis thaliana GN=AAE6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (686), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 127/228 (55%), Positives = 168/228 (73%), Gaps = 3/228 (1%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPV 61
E +GF ++H YGLTET G C WKP WN LP ++A++KARQGV +G EID+ DP
Sbjct: 318 ESIGFVISHGYGLTETAGVIVSCAWKPKWNHLPASDRARLKARQGVRTVGFTEIDVVDPE 377
Query: 62 TMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKD 121
+ SV + +T+GE++ RG++VM GYLK+ T+ A GWF +GD+GV H DGY+E+KD
Sbjct: 378 SGLSVERNGETVGEIVMRGSSVMLGYLKDPVGTEKALKNGWFYTGDVGVIHSDGYLEIKD 437
Query: 122 RSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVA--N 179
RSKDIII+GGEN+S++EVE+VL++ P+V E AVV RPD+ WGETPCAFV LK+G
Sbjct: 438 RSKDIIITGGENVSSVEVETVLYTIPAVNEVAVVARPDEFWGETPCAFVSLKNGFSGKPT 497
Query: 180 GEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226
EE++ YCR ++P YM P+TV F D LPK+STGK K+VLR+ AK MG
Sbjct: 498 EEELMEYCRKKMPKYMVPKTVSFMDELPKSSTGKVTKFVLRDIAKKMG 545
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May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C8D4|AAE11_ARATH Butyrate--CoA ligase AAE11, peroxisomal OS=Arabidopsis thaliana GN=AAE11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (683), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 126/229 (55%), Positives = 169/229 (73%), Gaps = 4/229 (1%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
+E+LGF + H YGLTE GP C W+ +WN LP +Q +++ RQGV +L L ++D+K+
Sbjct: 320 VEQLGFHVMHGYGLTEATGPVLFCEWQDEWNKLPEHQQIELQQRQGVRNLTLADVDVKNT 379
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
T++SVP D KT+GE++ +G+++M GYLKN KAT +AF GW +GD+GV HPDGY+E+K
Sbjct: 380 KTLESVPRDGKTMGEIVIKGSSLMKGYLKNPKATSEAFKHGWLNTGDIGVIHPDGYVEIK 439
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLK---DGCV 177
DRSKDIIISGGENIS+IEVE VL+ + VLEAAVV P WGETPCAFV LK +G V
Sbjct: 440 DRSKDIIISGGENISSIEVEKVLYMYQEVLEAAVVAMPHPLWGETPCAFVVLKKGEEGLV 499
Query: 178 ANGEEIINYCRDRLPHYMAPRTVV-FEDLPKTSTGKTQKYVLREKAKAM 225
+ ++I YCR+ +PH+M P+ VV F++LPK S GK K LR+ AKA+
Sbjct: 500 TSEGDLIKYCRENMPHFMCPKKVVFFQELPKNSNGKILKSKLRDIAKAL 548
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Butyrate--CoA ligase that is active in vitro with medium-chain fatty acids, with a preference for hexanoate and octanoate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q9SS00|AAE12_ARATH Probable acyl-activating enzyme 12, peroxisomal OS=Arabidopsis thaliana GN=AAE12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 263 bits (672), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 125/236 (52%), Positives = 165/236 (69%), Gaps = 11/236 (4%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
++ LGF + HAYGLTE GP C W+ +WN LP +Q ++KARQG+ LGL E+D+++
Sbjct: 320 VQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGLSILGLTEVDVRNK 379
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
T +SVP D KT+GE++ +G+++M GYLKN KAT +AF GW SGD+GV HPDG++E+K
Sbjct: 380 ETQESVPRDGKTMGEIVMKGSSIMKGYLKNPKATYEAFKHGWLNSGDVGVIHPDGHVEIK 439
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDG----- 175
DRSKDIIISGGENIS++EVE++++ +P VLE AVV P WGETPCAFV L+ G
Sbjct: 440 DRSKDIIISGGENISSVEVENIIYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETNNE 499
Query: 176 -----CVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225
V ++I YCR+ LPH+M PR VVF D LPK GK K LR+ AK +
Sbjct: 500 DREDKLVTKERDLIEYCRENLPHFMCPRKVVFLDELPKNGNGKILKPKLRDIAKGL 555
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May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C9G2|AEE22_ARATH Probable acyl-activating enzyme 22 OS=Arabidopsis thaliana GN=AEE22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (661), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 124/236 (52%), Positives = 161/236 (68%), Gaps = 11/236 (4%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
++ LGF + H YGLTE GP C W+ +WN L +Q ++KARQG+ L + E+D+K
Sbjct: 290 VQRLGFQVLHVYGLTEATGPALFCEWQDEWNRLTENQQMELKARQGLGILSVAEVDVKYN 349
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
T +SVP D KT+GE++ +GN +M GYLKN KAT +AF GW +GD+GV HPDG+IE+K
Sbjct: 350 ETQESVPHDGKTMGEIVMKGNNIMKGYLKNSKATFEAFKHGWLNTGDVGVIHPDGHIEIK 409
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDG----- 175
DRSKDIIISGGENIS++EVE++L+ HP V E AVV P WGETPCAF+ L+ G
Sbjct: 410 DRSKDIIISGGENISSVEVENILYKHPRVFEVAVVAMPHRVWGETPCAFIVLQKGETNKE 469
Query: 176 -----CVANGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKAM 225
VA +E+I+YCR+ LPH+M PR VVF E+LPK GK K LR K +
Sbjct: 470 DDEYKFVAREKELIDYCRENLPHFMCPRKVVFLEELPKNGNGKILKPNLRAITKGL 525
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LPK7|AEE10_ARATH Probable acyl-activating enzyme 10 OS=Arabidopsis thaliana GN=AEE10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 258 bits (660), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 128/233 (54%), Positives = 168/233 (72%), Gaps = 8/233 (3%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPV 61
E LGF ++H+YGLTET GP C WKP W+ L E+A++K+RQGV LG E+D++D
Sbjct: 317 ESLGFNVSHSYGLTETSGPVVSCAWKPKWDHLDPLERARLKSRQGVRTLGFTEVDVRDRK 376
Query: 62 TMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELK 120
T KSV D ++GE++FRG++VM GY K+ + T + GWF SGD+GV H DGY+E+K
Sbjct: 377 TGKSVKHDGVSVGEIVFRGSSVMLGYYKDPQGTAACMREDGWFYSGDIGVIHKDGYLEIK 436
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLK-----DG 175
DRSKD+II GGENIS+ E+E+VL+++P V EAAVV +PD WGETPCAFV LK DG
Sbjct: 437 DRSKDVIICGGENISSAEIETVLYTNPVVKEAAVVAKPDKMWGETPCAFVSLKCDNNGDG 496
Query: 176 CVANGE-EIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKAMG 226
V E EI +C+ +LP YM PR V+F E+LPKTSTGK QK++LR+ AK +
Sbjct: 497 SVPVTEREIREFCKTKLPKYMVPRKVIFQEELPKTSTGKIQKFLLRQMAKTLS 549
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 236 | ||||||
| 255539206 | 551 | AMP dependent ligase, putative [Ricinus | 1.0 | 0.428 | 0.847 | 1e-118 | |
| 224086034 | 552 | predicted protein [Populus trichocarpa] | 1.0 | 0.427 | 0.835 | 1e-116 | |
| 225457528 | 566 | PREDICTED: putative acyl-CoA synthetase | 1.0 | 0.416 | 0.805 | 1e-114 | |
| 297850474 | 555 | adenosine monophosphate binding protein | 1.0 | 0.425 | 0.783 | 1e-111 | |
| 356497397 | 553 | PREDICTED: medium-chain-fatty-acid--CoA | 1.0 | 0.426 | 0.775 | 1e-111 | |
| 356538992 | 553 | PREDICTED: medium-chain-fatty-acid--CoA | 1.0 | 0.426 | 0.775 | 1e-111 | |
| 18394877 | 556 | acyl activating enzyme 1 [Arabidopsis th | 1.0 | 0.424 | 0.783 | 1e-111 | |
| 13937177 | 556 | At1g20560/F2D10_4 [Arabidopsis thaliana] | 1.0 | 0.424 | 0.783 | 1e-110 | |
| 8886956 | 581 | F2D10.4 [Arabidopsis thaliana] | 1.0 | 0.406 | 0.783 | 1e-110 | |
| 8778599 | 579 | F5M15.12 [Arabidopsis thaliana] | 1.0 | 0.407 | 0.783 | 1e-110 |
| >gi|255539206|ref|XP_002510668.1| AMP dependent ligase, putative [Ricinus communis] gi|223551369|gb|EEF52855.1| AMP dependent ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 200/236 (84%), Positives = 219/236 (92%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
MEELGF +TH+YGLTETYGPGTVC WKP+W SLPR+ QAKIKARQG+ HLG++E+DIKDP
Sbjct: 316 MEELGFNVTHSYGLTETYGPGTVCTWKPEWTSLPRDVQAKIKARQGLQHLGIEEVDIKDP 375
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
VTMKSVP DAKTIGEVMFRGNTVMNGYLKNL+AT++AF GGWFRSGDLGV+HPDGYIELK
Sbjct: 376 VTMKSVPPDAKTIGEVMFRGNTVMNGYLKNLRATEEAFKGGWFRSGDLGVKHPDGYIELK 435
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DRSKDIIISGGENISTIEVESVLFSHP+VLEAAVVG PDDHWGETPCAFVKLKDGC A+
Sbjct: 436 DRSKDIIISGGENISTIEVESVLFSHPAVLEAAVVGSPDDHWGETPCAFVKLKDGCNASA 495
Query: 181 EEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKAMGSISKKGTSKL 236
+E+I YCRD LPHYMAPRTV+FEDLPKTSTGK QKYVLR+KA A GS+SK TSKL
Sbjct: 496 QELIKYCRDHLPHYMAPRTVLFEDLPKTSTGKVQKYVLRKKASATGSLSKHKTSKL 551
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224086034|ref|XP_002307787.1| predicted protein [Populus trichocarpa] gi|222857236|gb|EEE94783.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust.
Identities = 198/237 (83%), Positives = 219/237 (92%), Gaps = 1/237 (0%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
MEELGF +TH+YGLTETYGPGTVC WKP+W SL E QAKIK+RQGV HLGL+E+DIKDP
Sbjct: 316 MEELGFHVTHSYGLTETYGPGTVCAWKPEWASLTPEAQAKIKSRQGVQHLGLEELDIKDP 375
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
VTMKSVP+DAKT+GEVMFRGNTVMNGYLKNL+AT+DAF GGWFRSGDLGV+HPDGYIELK
Sbjct: 376 VTMKSVPADAKTMGEVMFRGNTVMNGYLKNLEATKDAFSGGWFRSGDLGVKHPDGYIELK 435
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DRSKDIIISGGENIS+IEVES LFSHP+VLEAA+VGRPDD+WGETPCAFVKLK+GC AN
Sbjct: 436 DRSKDIIISGGENISSIEVESALFSHPAVLEAAIVGRPDDYWGETPCAFVKLKEGCNANA 495
Query: 181 EEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKAMGSISK-KGTSKL 236
EE+I +CRD LPHYM PRTVVF++LPKTSTGK QKYVL+EKAKAMGSISK TSKL
Sbjct: 496 EELIKFCRDHLPHYMTPRTVVFQELPKTSTGKVQKYVLKEKAKAMGSISKGNTTSKL 552
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457528|ref|XP_002270022.1| PREDICTED: putative acyl-CoA synthetase YngI-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 190/236 (80%), Positives = 221/236 (93%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
M+ELGF + H+YGLTETYGPGTVC WKP+W+ LP ++QAKI ARQG+ HLG++E+DIKDP
Sbjct: 331 MKELGFGVFHSYGLTETYGPGTVCTWKPEWDLLPPDKQAKINARQGLHHLGMEEVDIKDP 390
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
VTMKSVP DAKTIGEVMFRGNTVMNGYLK++KAT+++F GGWFRSGDLGV+HPDGYIELK
Sbjct: 391 VTMKSVPPDAKTIGEVMFRGNTVMNGYLKDIKATEESFKGGWFRSGDLGVKHPDGYIELK 450
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DRSKDIIISGGENISTIEVE+VLFSHP++LEAAVVGRPDDHWGETPCAFVKLK+GC AN
Sbjct: 451 DRSKDIIISGGENISTIEVEAVLFSHPAILEAAVVGRPDDHWGETPCAFVKLKEGCNANA 510
Query: 181 EEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKAMGSISKKGTSKL 236
EII +CR++LPHYMAP+TVVF DLPKTSTGKTQKY+L+EKAKAMGS+SK+ +SK+
Sbjct: 511 NEIIKFCRNKLPHYMAPKTVVFYDLPKTSTGKTQKYILKEKAKAMGSLSKRSSSKM 566
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297850474|ref|XP_002893118.1| adenosine monophosphate binding protein 1 AMPBP1 [Arabidopsis lyrata subsp. lyrata] gi|297338960|gb|EFH69377.1| adenosine monophosphate binding protein 1 AMPBP1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 185/236 (78%), Positives = 218/236 (92%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
MEELGF++ H+YGLTETYGPGT+C WKP+W+SLPREEQAK+KARQGV H+G++EI +KDP
Sbjct: 320 MEELGFSMFHSYGLTETYGPGTICTWKPEWDSLPREEQAKMKARQGVNHIGIEEIQVKDP 379
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
VTM+++P+D T+GEV+FRGNTVMNGYLKN +AT++AF GGWF SGDLGV+HPDGYIELK
Sbjct: 380 VTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEATKEAFKGGWFWSGDLGVKHPDGYIELK 439
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DRSKDIIISGGENIS+IEVES LF+HP VLEAAVV RPD++WGET CAFVKLKDG +A+
Sbjct: 440 DRSKDIIISGGENISSIEVESTLFTHPCVLEAAVVARPDEYWGETACAFVKLKDGSMASA 499
Query: 181 EEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKAMGSISKKGTSKL 236
EE+I+YCRDRLPHYMAPR++VFEDLPKTSTGK QK+VLR KAKA+GSISKKG SKL
Sbjct: 500 EELISYCRDRLPHYMAPRSIVFEDLPKTSTGKVQKFVLRTKAKALGSISKKGRSKL 555
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497397|ref|XP_003517547.1| PREDICTED: medium-chain-fatty-acid--CoA ligase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 183/236 (77%), Positives = 218/236 (92%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
MEELGF +TH+YGLTET+GP ++C WKP+W++LP++ QAK+KARQGV H+G++ +D+KDP
Sbjct: 318 MEELGFNVTHSYGLTETFGPASICTWKPEWDNLPQDAQAKLKARQGVAHVGMEGLDVKDP 377
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
TMKSVP+DAKT+GEVMFRGNTVMNGYLK+LKATQ+AF GGWF +GDLGV+HPDGYIELK
Sbjct: 378 HTMKSVPADAKTMGEVMFRGNTVMNGYLKDLKATQEAFKGGWFWTGDLGVKHPDGYIELK 437
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DRSKDIIISGGENISTIE+E V+FSHP+V EAAVVGRPDD+WGETPCAFVKLK+GC A
Sbjct: 438 DRSKDIIISGGENISTIELEGVIFSHPAVFEAAVVGRPDDYWGETPCAFVKLKEGCSATS 497
Query: 181 EEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKAMGSISKKGTSKL 236
EEII +C++RLP +MAPRTVVF DLPKTSTGKTQK+VLREKAKAMGS++KK TS+L
Sbjct: 498 EEIIQFCQNRLPRFMAPRTVVFTDLPKTSTGKTQKFVLREKAKAMGSLTKKNTSRL 553
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538992|ref|XP_003537984.1| PREDICTED: medium-chain-fatty-acid--CoA ligase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 183/236 (77%), Positives = 218/236 (92%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
MEELGF +TH+YGLTETYGPG++C WKP+W++L R+ QAK+KARQGV H+G++++D+KDP
Sbjct: 318 MEELGFNVTHSYGLTETYGPGSICTWKPEWDNLSRDAQAKLKARQGVAHVGMEDLDVKDP 377
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
TMKSVP+DAKT+GEVMFRGNTVMNGYLK+LKATQ+AF GGWF +GDLGV+HPDGYIELK
Sbjct: 378 HTMKSVPADAKTMGEVMFRGNTVMNGYLKDLKATQEAFKGGWFWTGDLGVKHPDGYIELK 437
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DRSKDIIISGGENISTIE+E V+FSHP+V EAAVVGRPDD+WGETPCAFVKLK+GC A
Sbjct: 438 DRSKDIIISGGENISTIELEGVIFSHPAVFEAAVVGRPDDYWGETPCAFVKLKEGCSATS 497
Query: 181 EEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKAMGSISKKGTSKL 236
+EII +C++RLP +MAPRTVVF DLPKTSTGKTQK+VLREKAKAMGS++KK S+L
Sbjct: 498 DEIIQFCQNRLPRFMAPRTVVFTDLPKTSTGKTQKFVLREKAKAMGSLTKKNASRL 553
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18394877|ref|NP_564116.1| acyl activating enzyme 1 [Arabidopsis thaliana] gi|378548264|sp|F4HUK6.1|AAE1_ARATH RecName: Full=Probable acyl-activating enzyme 1, peroxisomal; AltName: Full=AMP-binding protein 1; Short=AtAMPBP1 gi|332191865|gb|AEE29986.1| acyl activating enzyme 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust.
Identities = 185/236 (78%), Positives = 216/236 (91%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
MEELGF++ H+YGLTETYGPGT+C WKP+W+SLPREEQAK+KARQGV HLGL+EI +KDP
Sbjct: 321 MEELGFSMFHSYGLTETYGPGTICTWKPEWDSLPREEQAKMKARQGVNHLGLEEIQVKDP 380
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
VTM+++P+D T+GEV+FRGNTVMNGYLKN +AT++AF GGWF SGDLGV+HPDGYIELK
Sbjct: 381 VTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEATKEAFKGGWFWSGDLGVKHPDGYIELK 440
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DRSKDIIISGGENIS+IEVES LF+HP VLEAAVV RPD++WGET CAFVKLKDG A+
Sbjct: 441 DRSKDIIISGGENISSIEVESTLFTHPCVLEAAVVARPDEYWGETACAFVKLKDGSKASA 500
Query: 181 EEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKAMGSISKKGTSKL 236
EE+I+YCRDRLPHYMAPR++VFEDLPKTSTGK QK+VLR KAKA+ S+SKKG SKL
Sbjct: 501 EELISYCRDRLPHYMAPRSIVFEDLPKTSTGKVQKFVLRTKAKALVSLSKKGRSKL 556
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|13937177|gb|AAK50082.1|AF372942_1 At1g20560/F2D10_4 [Arabidopsis thaliana] gi|18700260|gb|AAL77740.1| At1g20560/F2D10_4 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 185/236 (78%), Positives = 216/236 (91%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
MEELGF++ H+YGLTETYGPGT+C WKP+W+SLPREEQAK+KARQGV HLGL+EI +KDP
Sbjct: 321 MEELGFSMFHSYGLTETYGPGTICTWKPEWDSLPREEQAKMKARQGVNHLGLEEIQVKDP 380
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
VTM+++P+D T+GEV+FRGNTVMNGYLKN +AT++AF GGWF SGDLGV+HPDGYIELK
Sbjct: 381 VTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEATKEAFKGGWFWSGDLGVKHPDGYIELK 440
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DRSKDIIISGGENIS+IEVES LF+HP VLEAAVV RPD++WGET CAFVKLKDG A+
Sbjct: 441 DRSKDIIISGGENISSIEVESTLFTHPCVLEAAVVARPDEYWGETACAFVKLKDGSKASA 500
Query: 181 EEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKAMGSISKKGTSKL 236
EE+I+YCRDRLPHYMAPR++VFEDLPKTSTGK QK+VLR KAKA+ S+SKKG SKL
Sbjct: 501 EELISYCRDRLPHYMAPRSIVFEDLPKTSTGKVQKFVLRTKAKALVSLSKKGRSKL 556
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8886956|gb|AAF80642.1|AC069251_35 F2D10.4 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 185/236 (78%), Positives = 216/236 (91%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
MEELGF++ H+YGLTETYGPGT+C WKP+W+SLPREEQAK+KARQGV HLGL+EI +KDP
Sbjct: 346 MEELGFSMFHSYGLTETYGPGTICTWKPEWDSLPREEQAKMKARQGVNHLGLEEIQVKDP 405
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
VTM+++P+D T+GEV+FRGNTVMNGYLKN +AT++AF GGWF SGDLGV+HPDGYIELK
Sbjct: 406 VTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEATKEAFKGGWFWSGDLGVKHPDGYIELK 465
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DRSKDIIISGGENIS+IEVES LF+HP VLEAAVV RPD++WGET CAFVKLKDG A+
Sbjct: 466 DRSKDIIISGGENISSIEVESTLFTHPCVLEAAVVARPDEYWGETACAFVKLKDGSKASA 525
Query: 181 EEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKAMGSISKKGTSKL 236
EE+I+YCRDRLPHYMAPR++VFEDLPKTSTGK QK+VLR KAKA+ S+SKKG SKL
Sbjct: 526 EELISYCRDRLPHYMAPRSIVFEDLPKTSTGKVQKFVLRTKAKALVSLSKKGRSKL 581
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8778599|gb|AAF79607.1|AC027665_8 F5M15.12 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 185/236 (78%), Positives = 216/236 (91%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
MEELGF++ H+YGLTETYGPGT+C WKP+W+SLPREEQAK+KARQGV HLGL+EI +KDP
Sbjct: 344 MEELGFSMFHSYGLTETYGPGTICTWKPEWDSLPREEQAKMKARQGVNHLGLEEIQVKDP 403
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
VTM+++P+D T+GEV+FRGNTVMNGYLKN +AT++AF GGWF SGDLGV+HPDGYIELK
Sbjct: 404 VTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEATKEAFKGGWFWSGDLGVKHPDGYIELK 463
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DRSKDIIISGGENIS+IEVES LF+HP VLEAAVV RPD++WGET CAFVKLKDG A+
Sbjct: 464 DRSKDIIISGGENISSIEVESTLFTHPCVLEAAVVARPDEYWGETACAFVKLKDGSKASA 523
Query: 181 EEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKAMGSISKKGTSKL 236
EE+I+YCRDRLPHYMAPR++VFEDLPKTSTGK QK+VLR KAKA+ S+SKKG SKL
Sbjct: 524 EELISYCRDRLPHYMAPRSIVFEDLPKTSTGKVQKFVLRTKAKALVSLSKKGRSKL 579
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 236 | ||||||
| TAIR|locus:2030407 | 556 | AAE1 "acyl activating enzyme 1 | 1.0 | 0.424 | 0.783 | 3.7e-103 | |
| TAIR|locus:2057249 | 603 | AT2G17650 [Arabidopsis thalian | 0.966 | 0.378 | 0.694 | 3.6e-89 | |
| TAIR|locus:2086122 | 569 | AAE7 "acyl-activating enzyme 7 | 0.974 | 0.404 | 0.574 | 8.1e-76 | |
| TIGR_CMR|SPO_0677 | 542 | SPO_0677 "AMP-binding protein" | 0.953 | 0.415 | 0.604 | 2.1e-75 | |
| UNIPROTKB|Q47WB3 | 541 | CPS_4259 "AMP-binding protein" | 0.940 | 0.410 | 0.567 | 4.8e-71 | |
| TIGR_CMR|CPS_4259 | 541 | CPS_4259 "AMP-binding protein" | 0.940 | 0.410 | 0.567 | 4.8e-71 | |
| TAIR|locus:2204360 | 544 | AT1G75960 [Arabidopsis thalian | 0.949 | 0.411 | 0.581 | 5.5e-70 | |
| TAIR|locus:2171402 | 552 | AAE5 "acyl activating enzyme 5 | 0.957 | 0.409 | 0.558 | 8e-69 | |
| TAIR|locus:2171357 | 550 | AT5G16340 [Arabidopsis thalian | 0.953 | 0.409 | 0.557 | 2.4e-67 | |
| TAIR|locus:2013860 | 572 | AAE11 "acyl-activating enzyme | 0.953 | 0.393 | 0.550 | 3.1e-67 |
| TAIR|locus:2030407 AAE1 "acyl activating enzyme 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
Identities = 185/236 (78%), Positives = 216/236 (91%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
MEELGF++ H+YGLTETYGPGT+C WKP+W+SLPREEQAK+KARQGV HLGL+EI +KDP
Sbjct: 321 MEELGFSMFHSYGLTETYGPGTICTWKPEWDSLPREEQAKMKARQGVNHLGLEEIQVKDP 380
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
VTM+++P+D T+GEV+FRGNTVMNGYLKN +AT++AF GGWF SGDLGV+HPDGYIELK
Sbjct: 381 VTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEATKEAFKGGWFWSGDLGVKHPDGYIELK 440
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DRSKDIIISGGENIS+IEVES LF+HP VLEAAVV RPD++WGET CAFVKLKDG A+
Sbjct: 441 DRSKDIIISGGENISSIEVESTLFTHPCVLEAAVVARPDEYWGETACAFVKLKDGSKASA 500
Query: 181 EEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKAMGSISKKGTSKL 236
EE+I+YCRDRLPHYMAPR++VFEDLPKTSTGK QK+VLR KAKA+ S+SKKG SKL
Sbjct: 501 EELISYCRDRLPHYMAPRSIVFEDLPKTSTGKVQKFVLRTKAKALVSLSKKGRSKL 556
|
|
| TAIR|locus:2057249 AT2G17650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
Identities = 159/229 (69%), Positives = 194/229 (84%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
MEELGF ++H YGLTETYGPGT CVWKP+W+SL EE+ K+KARQGV HLGL+ +D+KDP
Sbjct: 375 MEELGFNVSHLYGLTETYGPGTHCVWKPEWDSLSLEERTKLKARQGVQHLGLEGLDVKDP 434
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
+TM++VP D T+GEVMFRGNTVM+GY K+++AT+ AF+G WF SGDL V++PDGYIE+K
Sbjct: 435 LTMETVPDDGLTMGEVMFRGNTVMSGYFKDIEATRKAFEGDWFHSGDLAVKYPDGYIEIK 494
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGC-VAN 179
DR KD+IISGGENIS++EVE VL SH +VLEAAVV RPD HWG+TPC FVKLK+G
Sbjct: 495 DRLKDVIISGGENISSVEVERVLCSHQAVLEAAVVARPDHHWGQTPCGFVKLKEGFDTIK 554
Query: 180 GEEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKAMGSI 228
EEII +CRD LPHYMAP+T+VF D+PKTSTGK QKY+LR+KA MGS+
Sbjct: 555 PEEIIGFCRDHLPHYMAPKTIVFGDIPKTSTGKVQKYLLRKKADEMGSL 603
|
|
| TAIR|locus:2086122 AAE7 "acyl-activating enzyme 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
Identities = 135/235 (57%), Positives = 180/235 (76%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
M + GF + H YGL+ETYGP TVC WKP+W+SLP E QAK+ ARQGV + G++++D+ D
Sbjct: 332 MNQKGFRVAHTYGLSETYGPSTVCAWKPEWDSLPPETQAKLNARQGVRYTGMEQLDVIDT 391
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
T K VP+D KT GE++FRGN VM GYLKN +A ++ F GGWF SGD+ V+HPD YIE+K
Sbjct: 392 QTGKPVPADGKTAGEIVFRGNMVMKGYLKNPEANKETFAGGWFHSGDIAVKHPDNYIEIK 451
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN- 179
DRSKD+IISGGENIS++EVE+V++ HP+VLEA+VV RPD+ W E+PCAFV LK +
Sbjct: 452 DRSKDVIISGGENISSVEVENVVYHHPAVLEASVVARPDERWQESPCAFVTLKSDYEKHD 511
Query: 180 ----GEEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKAMGSISK 230
++I+ +CR++LP Y P++VVF LPKT+TGK QK++LR KAK MG + +
Sbjct: 512 QNKLAQDIMKFCREKLPAYWVPKSVVFGPLPKTATGKIQKHILRTKAKEMGPVPR 566
|
|
| TIGR_CMR|SPO_0677 SPO_0677 "AMP-binding protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 136/225 (60%), Positives = 172/225 (76%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
ME +G +TH YGLTETYGP VC WK +W+ P E+A +K RQGV ++ L + + DP
Sbjct: 318 MEAMGVDVTHVYGLTETYGPSVVCAWKEEWDGRPGAERAALKVRQGVRYVALSGLMVADP 377
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
T++ VP+D +T+GE+ +GN VM GYLKN AT AF GGWF SGDLGV HPDGYI LK
Sbjct: 378 ETLEPVPADGETMGEIFMQGNIVMKGYLKNPDATDRAFRGGWFASGDLGVMHPDGYIALK 437
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DRSKDIIISGGENIS++EVE VL+ HP+V+EAAVV RPD+ WGETPCAFV+LK G
Sbjct: 438 DRSKDIIISGGENISSVEVEDVLYKHPAVMEAAVVARPDEKWGETPCAFVELKPGQSVEA 497
Query: 181 EEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKAM 225
++I +CR + H+ AP+TVVF +LPKTSTGK QK++LRE+A+A+
Sbjct: 498 ADLIAHCRANMAHFKAPKTVVFGELPKTSTGKIQKFLLRERARAL 542
|
|
| UNIPROTKB|Q47WB3 CPS_4259 "AMP-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 126/222 (56%), Positives = 163/222 (73%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
ME GF +TH YGLTETYGP VC W +WN E+QAK+K+RQGV LD++ + DP
Sbjct: 318 MEASGFKVTHTYGLTETYGPSVVCAWHDEWNEESPEKQAKLKSRQGVRSPMLDQLMVADP 377
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
T++ +P D +++GE+ RGN VM GYLKN TQ AFDGGW SGD+ V H DGYIE+K
Sbjct: 378 ETLEPMPKDGESVGEIFMRGNLVMKGYLKNPSTTQAAFDGGWLHSGDIAVWHSDGYIEIK 437
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DRSKD+IISGGENIS++EVE +L+ HP V E AVV + DD WGETPCAF+
Sbjct: 438 DRSKDVIISGGENISSVEVEDILYRHPKVQEVAVVAKKDDKWGETPCAFITPMPNVEITE 497
Query: 181 EEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKA 222
+E+I++CRD + H+ AP+T++F +LPKTSTGK QK+VLR++A
Sbjct: 498 QEMISFCRDNMAHFKAPKTIIFGELPKTSTGKIQKFVLRQQA 539
|
|
| TIGR_CMR|CPS_4259 CPS_4259 "AMP-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 126/222 (56%), Positives = 163/222 (73%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
ME GF +TH YGLTETYGP VC W +WN E+QAK+K+RQGV LD++ + DP
Sbjct: 318 MEASGFKVTHTYGLTETYGPSVVCAWHDEWNEESPEKQAKLKSRQGVRSPMLDQLMVADP 377
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
T++ +P D +++GE+ RGN VM GYLKN TQ AFDGGW SGD+ V H DGYIE+K
Sbjct: 378 ETLEPMPKDGESVGEIFMRGNLVMKGYLKNPSTTQAAFDGGWLHSGDIAVWHSDGYIEIK 437
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DRSKD+IISGGENIS++EVE +L+ HP V E AVV + DD WGETPCAF+
Sbjct: 438 DRSKDVIISGGENISSVEVEDILYRHPKVQEVAVVAKKDDKWGETPCAFITPMPNVEITE 497
Query: 181 EEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKA 222
+E+I++CRD + H+ AP+T++F +LPKTSTGK QK+VLR++A
Sbjct: 498 QEMISFCRDNMAHFKAPKTIIFGELPKTSTGKIQKFVLRQQA 539
|
|
| TAIR|locus:2204360 AT1G75960 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
Identities = 132/227 (58%), Positives = 173/227 (76%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPV 61
E LGF ++H YGLTET G C WKP+WN LP +QA++K+RQGV +G EID+ DP
Sbjct: 318 ESLGFIVSHGYGLTETAGVIVSCAWKPNWNRLPASDQAQLKSRQGVRTVGFSEIDVVDPE 377
Query: 62 TMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKD 121
+ +SV D +T+GE++ RG+++M GYLKN TQ++F GWF +GDLGV H DGY+E+KD
Sbjct: 378 SGRSVERDGETVGEIVLRGSSIMLGYLKNPIGTQNSFKNGWFFTGDLGVIHGDGYLEIKD 437
Query: 122 RSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN-- 179
RSKD+IISGGEN+S++EVE+VL+++P+V EAAVV RPD+ WGETPCAFV LK G
Sbjct: 438 RSKDVIISGGENVSSVEVEAVLYTNPAVNEAAVVARPDEFWGETPCAFVSLKPGLTRKPT 497
Query: 180 GEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKAM 225
+EII YC+ ++P YMAP+TV F E+LPKTSTGK K +L+E AK M
Sbjct: 498 DKEIIEYCKYKMPRYMAPKTVSFLEELPKTSTGKIIKSLLKEIAKNM 544
|
|
| TAIR|locus:2171402 AAE5 "acyl activating enzyme 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 128/229 (55%), Positives = 168/229 (73%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPV 61
E +GF ++H YGLTET G C WKP WN LP ++A++KARQGV +G EID+ DP
Sbjct: 318 ESIGFVISHGYGLTETAGLNVSCAWKPQWNRLPASDRARLKARQGVRTVGFTEIDVVDPE 377
Query: 62 TMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKD 121
+ +SV + +T+GE++ RG+++M GYLK+ T+ A GWF +GD+GV H DGY+E+KD
Sbjct: 378 SGRSVERNGETVGEIVMRGSSIMLGYLKDPVGTEKALKNGWFYTGDVGVIHSDGYLEIKD 437
Query: 122 RSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGE 181
RSKDIII+GGEN+S++EVE+VL+++P+V E AVV RPD WGETPCAFV LK G
Sbjct: 438 RSKDIIITGGENVSSVEVETVLYTNPAVNEVAVVARPDVFWGETPCAFVSLKSGLTQRPT 497
Query: 182 EI--INYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGS 227
E+ I YCR ++P YM P+TV F D LPKTSTGK K+VLRE AK MG+
Sbjct: 498 EVEMIEYCRKKMPKYMVPKTVSFVDELPKTSTGKVMKFVLREIAKKMGT 546
|
|
| TAIR|locus:2171357 AT5G16340 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 127/228 (55%), Positives = 168/228 (73%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPV 61
E +GF ++H YGLTET G C WKP WN LP ++A++KARQGV +G EID+ DP
Sbjct: 318 ESIGFVISHGYGLTETAGVIVSCAWKPKWNHLPASDRARLKARQGVRTVGFTEIDVVDPE 377
Query: 62 TMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKD 121
+ SV + +T+GE++ RG++VM GYLK+ T+ A GWF +GD+GV H DGY+E+KD
Sbjct: 378 SGLSVERNGETVGEIVMRGSSVMLGYLKDPVGTEKALKNGWFYTGDVGVIHSDGYLEIKD 437
Query: 122 RSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG- 180
RSKDIII+GGEN+S++EVE+VL++ P+V E AVV RPD+ WGETPCAFV LK+G
Sbjct: 438 RSKDIIITGGENVSSVEVETVLYTIPAVNEVAVVARPDEFWGETPCAFVSLKNGFSGKPT 497
Query: 181 -EEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226
EE++ YCR ++P YM P+TV F D LPK+STGK K+VLR+ AK MG
Sbjct: 498 EEELMEYCRKKMPKYMVPKTVSFMDELPKSSTGKVTKFVLRDIAKKMG 545
|
|
| TAIR|locus:2013860 AAE11 "acyl-activating enzyme 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 126/229 (55%), Positives = 169/229 (73%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
+E+LGF + H YGLTE GP C W+ +WN LP +Q +++ RQGV +L L ++D+K+
Sbjct: 320 VEQLGFHVMHGYGLTEATGPVLFCEWQDEWNKLPEHQQIELQQRQGVRNLTLADVDVKNT 379
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
T++SVP D KT+GE++ +G+++M GYLKN KAT +AF GW +GD+GV HPDGY+E+K
Sbjct: 380 KTLESVPRDGKTMGEIVIKGSSLMKGYLKNPKATSEAFKHGWLNTGDIGVIHPDGYVEIK 439
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLK---DGCV 177
DRSKDIIISGGENIS+IEVE VL+ + VLEAAVV P WGETPCAFV LK +G V
Sbjct: 440 DRSKDIIISGGENISSIEVEKVLYMYQEVLEAAVVAMPHPLWGETPCAFVVLKKGEEGLV 499
Query: 178 ANGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKAM 225
+ ++I YCR+ +PH+M P+ VVF ++LPK S GK K LR+ AKA+
Sbjct: 500 TSEGDLIKYCRENMPHFMCPKKVVFFQELPKNSNGKILKSKLRDIAKAL 548
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| F4HUK6 | AAE1_ARATH | 6, ., 2, ., 1, ., - | 0.7838 | 1.0 | 0.4244 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 236 | |||
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 1e-152 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 1e-143 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 1e-126 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 5e-96 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 1e-79 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 1e-75 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 9e-75 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 3e-73 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 4e-73 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 5e-71 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 6e-61 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 1e-57 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 1e-55 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 2e-55 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 3e-55 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 9e-54 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 1e-53 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 7e-53 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 2e-52 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 3e-50 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 1e-49 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 9e-49 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 3e-48 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 1e-46 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 1e-46 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 1e-45 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 2e-45 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 1e-44 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 4e-44 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 5e-43 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 7e-43 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 4e-42 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 8e-42 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 1e-41 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 1e-41 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 2e-41 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 9e-41 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 8e-40 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 9e-40 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 1e-39 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 1e-39 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 1e-39 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 1e-38 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 4e-38 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 6e-38 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 8e-38 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 1e-37 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 3e-37 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 2e-35 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 2e-35 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 3e-35 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 3e-35 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 4e-35 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 4e-35 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 2e-34 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 2e-34 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 2e-34 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 5e-33 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 5e-33 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 5e-32 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 9e-32 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 1e-31 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 2e-31 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 3e-31 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 6e-31 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 1e-30 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 2e-30 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 6e-30 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 6e-30 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 2e-29 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 3e-29 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 3e-28 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 4e-28 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 8e-28 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 2e-27 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 3e-27 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 5e-27 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 5e-27 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 6e-27 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 2e-26 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 2e-26 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 4e-26 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 5e-26 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 6e-26 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 2e-25 | |
| PRK13390 | 501 | PRK13390, PRK13390, acyl-CoA synthetase; Provision | 2e-25 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 6e-25 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 2e-24 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 2e-24 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 3e-24 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 4e-24 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 4e-23 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 9e-23 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 2e-22 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 3e-22 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 1e-21 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 1e-21 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 2e-21 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 2e-21 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 2e-21 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 3e-21 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 5e-21 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 5e-21 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 9e-21 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 2e-20 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 4e-20 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 5e-20 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 7e-20 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 2e-18 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 3e-18 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 7e-18 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 7e-18 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 8e-17 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 7e-16 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 8e-16 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 1e-15 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 2e-15 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 4e-15 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 7e-15 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 9e-15 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 1e-14 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 2e-14 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 3e-14 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 9e-14 | |
| PRK08308 | 414 | PRK08308, PRK08308, acyl-CoA synthetase; Validated | 4e-13 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 4e-13 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 4e-13 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 5e-13 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 6e-13 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 6e-13 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 6e-13 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 5e-12 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 7e-12 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-11 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 2e-11 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 3e-11 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-10 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 2e-10 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 3e-10 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 5e-10 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 7e-10 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 1e-09 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 4e-09 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 6e-09 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 7e-09 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 3e-08 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 3e-08 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 4e-08 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 4e-08 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 5e-08 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 8e-08 | |
| PLN03052 | 728 | PLN03052, PLN03052, acetate--CoA ligase; Provision | 9e-08 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 1e-07 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 2e-07 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 2e-07 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 3e-07 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 6e-07 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 6e-07 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 6e-07 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 7e-07 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 1e-06 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 4e-06 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 5e-06 | |
| pfam13193 | 43 | pfam13193, DUF4009, Domain of unknown function (DU | 5e-06 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 8e-06 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 1e-05 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 2e-05 | |
| PRK12476 | 612 | PRK12476, PRK12476, putative fatty-acid--CoA ligas | 5e-05 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 9e-05 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 3e-04 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 3e-04 | |
| TIGR03443 | 1389 | TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh | 0.004 | |
| PLN03051 | 499 | PLN03051, PLN03051, acyl-activating enzyme; Provis | 0.004 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 433 bits (1117), Expect = e-152
Identities = 153/220 (69%), Positives = 183/220 (83%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
MEELGF +TH YGLTETYGP TVC WKP+W++LP EE+A++KARQGV ++GL+E+D+ DP
Sbjct: 301 MEELGFEVTHVYGLTETYGPITVCEWKPEWDALPAEERARLKARQGVRYVGLEEVDVVDP 360
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
TMK VP D KTIGE++ RGNTVM GY KN +AT++AF GGWF SGDL V HPDGYIE+K
Sbjct: 361 ETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAFAGGWFHSGDLAVVHPDGYIEIK 420
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DRSKDIIISGGENIS+IEVE VL+ HP+VLEAAVV RPD+ WGETPCAFV LK G
Sbjct: 421 DRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAFVVLKPGASVTE 480
Query: 181 EEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLRE 220
EE+I YCR++L H+ P+TV F +LPKT+TGK QK+VLRE
Sbjct: 481 EELIEYCREKLAHFKVPKTVEFVELPKTATGKIQKFVLRE 520
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 411 bits (1058), Expect = e-143
Identities = 148/229 (64%), Positives = 185/229 (80%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
MEE+GF LTH YGLTETYGP TVC W+P+W++LP +E+A++KARQGV + + + + DP
Sbjct: 316 MEEIGFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDP 375
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
TM+ VP+D +TIGE+MFRGN VM GYLKN KAT++AF GGWF +GDL V HPDGYI++K
Sbjct: 376 DTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYIKIK 435
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DRSKDIIISGGENIS+IEVE VL+ HP+VL AAVV +PD WGE PCAFV+LKDG A
Sbjct: 436 DRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATE 495
Query: 181 EEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKAMGSIS 229
EEII +CR+ L + P+ VVF +LPKTSTGK QK+VLRE+AK++ +I
Sbjct: 496 EEIIAHCREHLAGFKVPKAVVFGELPKTSTGKIQKFVLREQAKSLKAID 544
|
Length = 545 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 368 bits (945), Expect = e-126
Identities = 149/235 (63%), Positives = 188/235 (80%), Gaps = 5/235 (2%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
M E GF +TH YGL+ETYGP TVC WKP+W+SLP EEQA++ ARQGV ++GL+ +D+ D
Sbjct: 330 MSEKGFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDT 389
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
TMK VP+D KT+GE++ RGN VM GYLKN KA ++AF GWF SGDLGV+HPDGYIE+K
Sbjct: 390 KTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVKHPDGYIEIK 449
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DRSKDIIISGGENIS++EVE+V+++HP+VLEA+VV RPD+ WGE+PCAFV LK G +
Sbjct: 450 DRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSD 509
Query: 181 E-----EIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKAMGSISK 230
E +I+ +CR+RLP Y P++VVF LPKT+TGK QK+VLR KAK MG + K
Sbjct: 510 EAALAEDIMKFCRERLPAYWVPKSVVFGPLPKTATGKIQKHVLRAKAKEMGPVKK 564
|
Length = 567 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 291 bits (746), Expect = 5e-96
Identities = 126/236 (53%), Positives = 166/236 (70%), Gaps = 11/236 (4%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
++ LGF + HAYGLTE GP C W+ +WN LP +Q ++KARQGV LGL ++D+K+
Sbjct: 320 VQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKNK 379
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
T +SVP D KT+GE++ +G+++M GYLKN KAT +AF GW +GD+GV HPDG++E+K
Sbjct: 380 ETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTGDVGVIHPDGHVEIK 439
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDG----- 175
DRSKDIIISGGENIS++EVE+VL+ +P VLE AVV P WGETPCAFV L+ G
Sbjct: 440 DRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKE 499
Query: 176 -----CVANGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKAM 225
V ++I YCR+ LPH+M PR VVF ++LPK GK K LR+ AK +
Sbjct: 500 DRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRDIAKGL 555
|
Length = 579 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 247 bits (634), Expect = 1e-79
Identities = 89/227 (39%), Positives = 122/227 (53%), Gaps = 8/227 (3%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
E+ G L YG+TET V V P+ Q + G P G+ E I D
Sbjct: 302 KEKFGIDLVQGYGMTETSP--VVSVLPPEDQLP---GQWTKRRSAGRPLPGV-EARIVDD 355
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
+P D +GE++ RG +M GY +AT + DGGW +GD+G DGY+ +
Sbjct: 356 -DGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYIT 414
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DR KD+IISGGENI E+E L+ HP+V E AV+G PD+ WGE P A V LK G +
Sbjct: 415 DRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDA 474
Query: 181 EEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKAMG 226
+E+ + R RL + P+ + F ++LP+TS GK K VLRE+
Sbjct: 475 KELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAEGK 521
|
Length = 521 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 237 bits (606), Expect = 1e-75
Identities = 98/221 (44%), Positives = 139/221 (62%), Gaps = 3/221 (1%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
+EE G + HA+G+TET GTV KP LP EE+ +++A+QG P G+ E+ I D
Sbjct: 299 LEERGVEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGV-ELRIVDD 357
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
+P D KT+GE++ RG V Y K+ + T++ GWFR+GD+ V DGYI++
Sbjct: 358 -EGNELPWDGKTVGELVVRGPWVTGSYYKDPEKTEELTRDGWFRTGDVAVIDEDGYIQIT 416
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DR+KD+I SGGE IS++E+E+ L +HP+V EAAVVG P + WGE P A V LK G
Sbjct: 417 DRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVGVPHEKWGERPLAVVVLKPGAKVTE 476
Query: 181 EEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLRE 220
EE++ + ++ + P VVF +++PKTS GK K LRE
Sbjct: 477 EELLEHLAKKVAKWWLPDRVVFVDEIPKTSVGKFDKKALRE 517
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 229 bits (587), Expect = 9e-75
Identities = 89/220 (40%), Positives = 124/220 (56%), Gaps = 14/220 (6%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
+E G YG+TET GP T L E+ + G P G+ E+ I D
Sbjct: 136 IEWFGPVFVQGYGMTET-GPTTTL--------LSPEDWLRKLGSVGRPVPGV-EVRIVDE 185
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
+ +P +GE++ RG VM GY +AT +A GW +GDLG DGY+ +
Sbjct: 186 -DGRELP--PGEVGEIVVRGPAVMAGYWNRPEATAEALRDGWLHTGDLGYLDEDGYLYIV 242
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DR KD+IISGGENI EVE+VL +HP+V + AV+G PD+ WGE A V L+ G +
Sbjct: 243 DRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPDEEWGEAVVAVVVLRPGATLDA 302
Query: 181 EEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLR 219
EE+I +CR+RL Y P++V F ++LP+ ++GK K LR
Sbjct: 303 EELIAFCRERLAGYKVPKSVEFVDELPRNASGKILKRELR 342
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 230 bits (588), Expect = 3e-73
Identities = 82/224 (36%), Positives = 112/224 (50%), Gaps = 7/224 (3%)
Query: 1 MEELG-FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKD 59
E + YGLTET K SL EE+ +KA+ G+P + + D
Sbjct: 289 RFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPL-VRLRVAD 347
Query: 60 PVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQ-DAFDGGWFRSGDLGVRHPDGYIE 118
VP D K +GEV +G + GY N +AT+ G+FR+GD+ V +GY+E
Sbjct: 348 EEGR-PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVE 406
Query: 119 LKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVA 178
+KDR KD+I SGGE IS++++E+ L HP V EAAVV P W E P A V +
Sbjct: 407 IKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGE-KP 465
Query: 179 NGEEIINYCRDRLPHY-MAPRTVVF-EDLPKTSTGKTQKYVLRE 220
EE+ + P VF E++P+TS GK K LRE
Sbjct: 466 TPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALRE 509
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 225 bits (576), Expect = 4e-73
Identities = 93/222 (41%), Positives = 122/222 (54%), Gaps = 15/222 (6%)
Query: 1 MEELGFT-LTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKD 59
EE +T YG+TET G GT + + G P G+ E+ I D
Sbjct: 138 REEFPMAEITTGYGMTETSGVGTQ--------TSGDDPYEDRPGTVGRPLPGV-EVKIVD 188
Query: 60 PVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIE 118
P VP +GE+ RG +VM GY + +AT +A D GW +GDLG DGY+
Sbjct: 189 PDG-GEVPPGE--VGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDEDGYLR 245
Query: 119 LKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVA 178
+ R KD+II GGENI E+E L +HP+V EAAVVG PD+ GE AFV LK G
Sbjct: 246 IVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVVAAFVVLKPGATL 305
Query: 179 NGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLR 219
EE+I +CR RL + PR V F ++LP+T++GK QK+ LR
Sbjct: 306 TEEELIAFCRGRLARFKVPRYVRFVDELPRTASGKIQKFKLR 347
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 225 bits (575), Expect = 5e-71
Identities = 93/224 (41%), Positives = 123/224 (54%), Gaps = 17/224 (7%)
Query: 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMK 64
+ YGLTET T+ P ++ G P G+ E+ I DP +
Sbjct: 317 PIAILEGYGLTETSPVVTIN---------PPDDLLAKPGSVGRPLPGV-EVRIVDPDGGE 366
Query: 65 SVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRS 123
+P +GE+ RG VM GY +AT +AFD GW R+GDLG DGY+ + R
Sbjct: 367 VLP---GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRL 423
Query: 124 KDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDG--CVANGE 181
KD+IISGGENI E+E+VL HP+V EAAVVG PD+ WGE A V LK G E
Sbjct: 424 KDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAE 483
Query: 182 EIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKA 224
E+ + R RL Y PR VVF ++LP+T++GK + LRE+ +A
Sbjct: 484 ELRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA 527
|
Length = 534 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 197 bits (504), Expect = 6e-61
Identities = 94/221 (42%), Positives = 121/221 (54%), Gaps = 18/221 (8%)
Query: 2 EEL-GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQA-KIKARQGVPHLGLDEIDIKD 59
EE G L YGLTET P T N L E + I G+P G E+ I D
Sbjct: 263 EEKTGAPLVEGYGLTET-SPVTTV------NPLDGERKPGSI----GLPLPGT-EVKIVD 310
Query: 60 PVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIEL 119
+P +GE++ RG VM GY + T + GW R+GD+G DGY +
Sbjct: 311 DEG-NELPPGE--VGELVVRGPQVMKGYWNRPEETAEVLTDGWLRTGDIGYMDEDGYFYI 367
Query: 120 KDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN 179
DR KD+II GG N+ E+E VL+SHP+VLEAAVVG PD + GE AFV LK+G
Sbjct: 368 VDRKKDMIIVGGFNVYPREIEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVLKEGASLT 427
Query: 180 GEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLR 219
EE+I +CR+RL Y PR V F ++LPK++ GK + LR
Sbjct: 428 EEELIAFCRERLAAYKVPRQVEFRDELPKSAVGKILRRELR 468
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 1e-57
Identities = 85/221 (38%), Positives = 105/221 (47%), Gaps = 15/221 (6%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPV 61
E LG + AYG+TE V V P + K A G P G E+ I D
Sbjct: 230 EALGAKVVRAYGMTEV---PLVTV------GTPDDPDDKRAATDGRPVPG-VEVRIVDD- 278
Query: 62 TMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKD 121
VP GE+ RG + GYL T+ D GWFR+GDLG DGY+ +
Sbjct: 279 DGNDVP--PGEEGELQVRGPQLFLGYLDPPDNTEAFTDDGWFRTGDLGRLDADGYLRITG 336
Query: 122 RSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGE 181
R KDIII GGENIS E+E +L HP+V E AVV PD+ GE CA V G
Sbjct: 337 RKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDERLGERVCAVVVPAPGASLTLA 396
Query: 182 EIINYCRD-RLP-HYMAPRTVVFEDLPKTSTGKTQKYVLRE 220
E+ + L R V + LP+T +GK QK+ LRE
Sbjct: 397 ELTEHLAAQGLAKQKWPERLEVVDALPRTPSGKVQKFELRE 437
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 1e-55
Identities = 68/166 (40%), Positives = 98/166 (59%), Gaps = 3/166 (1%)
Query: 63 MKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDR 122
V +GE++ R +M GY + + T +AF GGWF SGDLGV +GYI + DR
Sbjct: 359 GNDVA--PGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDR 416
Query: 123 SKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEE 182
KD+I +GGEN+++ EVE L++HP+V E AV+G PD W E A V K G +E
Sbjct: 417 KKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDE 476
Query: 183 IINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKAMGS 227
+I +CR RL + P+ V+F ++LP+ +GK K LRE+ +
Sbjct: 477 LIAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRERYAGAFT 522
|
Length = 523 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 2e-55
Identities = 85/210 (40%), Positives = 112/210 (53%), Gaps = 16/210 (7%)
Query: 7 TLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSV 66
+ YGLTET V PD + VP + E+ + D K +
Sbjct: 143 PILEGYGLTET---SVVTSTNPDSELKKPGTVGRP-----VPGV---EVRVVDEEG-KPL 190
Query: 67 PSDAKTIGEVMFRGNTVMNGYLKN-LKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKD 125
P +GE++ RG VM GY N + T A + GW+R+GDLG +GY+ + RSKD
Sbjct: 191 PPGE--VGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITGRSKD 248
Query: 126 IIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIIN 185
+I GGEN+ EVESVL HP+V EAAVVG PD+ GE AFV L+ G A EE+
Sbjct: 249 LIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGADALAEELKA 308
Query: 186 YCRDRLPHYMAPRTVVFED-LPKTSTGKTQ 214
+ R+RL Y PR + F D LPKT++GK
Sbjct: 309 HLRERLAPYKVPRVIEFVDELPKTASGKID 338
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 181 bits (463), Expect = 3e-55
Identities = 81/223 (36%), Positives = 113/223 (50%), Gaps = 28/223 (12%)
Query: 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKI----KARQGVPHLGLDEIDIKDP 60
G L YG+TET V + P + A + R GV E+ I D
Sbjct: 219 GVKLVEGYGMTET----GVPIIAPG-------DPAPPGSCGRPRPGV------EVRIVDE 261
Query: 61 VTMKSVPSDAKTIGEVMFRGN---TVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYI 117
+ VP +GE++ R + GY +AT A+ GWF +GD G R DG++
Sbjct: 262 DG-REVP--PGEVGELVVRPRRPWAMFKGYYGMPEATAKAWRNGWFHTGDRGRRDEDGFL 318
Query: 118 ELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCV 177
DR KD I GENIS+ EVE+ + +HP+V EAAVV P + + A V L+ G
Sbjct: 319 YFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAVPSELGEDEVKAVVVLRPGET 378
Query: 178 ANGEEIINYCRDRLPHYMAPRTV-VFEDLPKTSTGKTQKYVLR 219
+ E ++ +CRDRLP++M PR + ++LPKT T K QK LR
Sbjct: 379 LDPEALLEFCRDRLPYFMVPRYIEFVDELPKTPTEKIQKAELR 421
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 9e-54
Identities = 77/214 (35%), Positives = 107/214 (50%), Gaps = 31/214 (14%)
Query: 12 YGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLG--LD--EIDIKDPVTMKSVP 67
YG+TET V KPD + +G L E+ I +P
Sbjct: 220 YGMTET--ASQVATLKPD------------DFLAKLGSVGKPLPGRELRIVNP------- 258
Query: 68 SDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDII 127
GE++ RG ++ GYL T + GWF +GDLG +GY+ + R D+I
Sbjct: 259 ----QDGEILVRGPSLFLGYLPQGGLTPPLDEDGWFHTGDLGYLDAEGYLYVLGRRDDLI 314
Query: 128 ISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYC 187
ISGGENI E+E+VL HP+V EAAVVG PDD WG+ P AFV D V+ EE+ +
Sbjct: 315 ISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPNDDPVSV-EELQAFL 373
Query: 188 RDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLRE 220
D+L Y P+ +LP+ ++GK + LR+
Sbjct: 374 ADKLAKYKRPKRWYPLPELPRNASGKIDRAALRQ 407
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 180 bits (460), Expect = 1e-53
Identities = 72/180 (40%), Positives = 106/180 (58%), Gaps = 7/180 (3%)
Query: 48 PHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSG 106
PHL E+ I DP T ++VP GE+ RG +VM GY + + T +A D GW +G
Sbjct: 378 PHL---EVKIVDPETGETVPRG--EQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTG 432
Query: 107 DLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETP 166
DL V +GY+ + R KD+II GGENI E+E L++HP + + VVG PD+ +GE
Sbjct: 433 DLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEV 492
Query: 167 CAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKAM 225
CA++ L+ G E++ ++CR ++ HY PR + F ++ P T TGK QK+ +RE
Sbjct: 493 CAWIILRPGATLTEEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEE 552
|
Length = 559 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 177 bits (452), Expect = 7e-53
Identities = 87/224 (38%), Positives = 118/224 (52%), Gaps = 17/224 (7%)
Query: 2 EELGF-TLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQ-GVPHLGLDEIDIKD 59
ELG + YGL+E G T ++ K A G G+ E I +
Sbjct: 303 SELGVDIVLTGYGLSEASGVTTFN---------RLDDDRKTVAGTIGTAIAGV-ENKIVN 352
Query: 60 PVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIE 118
+ + + GE++ RG VM GY + +AT A D GW +GDLG +GY+
Sbjct: 353 ELGEEVPVGEV---GELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLY 409
Query: 119 LKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVA 178
+ DR KD+ I GG N+ EVE VL+ HP+V EAAV+G PD+ GE A+V LK G
Sbjct: 410 IVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAEL 469
Query: 179 NGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREK 221
EE+I YCR+ L Y PR++ F ++LPK +TGK K LREK
Sbjct: 470 TEEELIAYCREHLAKYKVPRSIEFLDELPKNATGKVLKRALREK 513
|
Length = 513 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 2e-52
Identities = 81/221 (36%), Positives = 112/221 (50%), Gaps = 17/221 (7%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLD-EIDIKDP 60
+ G + AYG+TE N LP + + G E+ I D
Sbjct: 140 KRFGVPVLEAYGMTEAAHQIAS-------NPLP-----PLVRKPGSVGRPAGVEVAILDD 187
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
+ +P GE++ RG V GYL N +A ++AF GWFR+GDLG DGY+ L
Sbjct: 188 -DGRPLPPGQ--EGEIVIRGPNVTAGYLNNPEANREAFRDGWFRTGDLGYLDEDGYLFLT 244
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
R K++I GGE IS EVE VL HP+V EA V G PD+ +GE A V L+
Sbjct: 245 GRIKELINRGGEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVLRADSKVTI 304
Query: 181 EEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLRE 220
EE+ ++ R RL + P+ ++F + LPK +TGK Q+ L E
Sbjct: 305 EELRDFARKRLAAFKVPKKILFVDALPKGATGKIQRRKLAE 345
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 3e-50
Identities = 85/223 (38%), Positives = 123/223 (55%), Gaps = 5/223 (2%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPV 61
E++G + HA+G+TE GT+ KP ++ LP + + + +QG P G+ E+ I D
Sbjct: 315 EDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGV-EMKITDDA 373
Query: 62 TMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKD 121
K +P D KT G + RG V Y + D D G+F +GD+ GY+ + D
Sbjct: 374 G-KELPWDGKTFGRLKVRGPAVAAAYYRVDGEILD--DDGFFDTGDVATIDAYGYMRITD 430
Query: 122 RSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGE 181
RSKD+I SGGE IS+I++E++ HP V EAAV+G W E P V+LK G A E
Sbjct: 431 RSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETATRE 490
Query: 182 EIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAK 223
EI+ Y ++ + P V F + +P T+TGK K LRE+ K
Sbjct: 491 EILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALREQFK 533
|
Length = 542 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 1e-49
Identities = 87/225 (38%), Positives = 125/225 (55%), Gaps = 15/225 (6%)
Query: 1 MEELGFT-LTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKD 59
M+E+ + AYG+TET P ++ D L R + + + PHL E+ + D
Sbjct: 338 MDEMHMAEVQIAYGMTET-SPVSLQTTAAD--DLERRVETVGRTQ---PHL---EVKVVD 388
Query: 60 PVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIE 118
P +VP IGE+ RG +VM GY N +AT ++ D GW +GDL GY+
Sbjct: 389 PDG-ATVPRGE--IGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVR 445
Query: 119 LKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVA 178
+ RSKD+II GGENI E+E LF+HP+V + V G PD+ +GE A+V+L G A
Sbjct: 446 IVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAA 505
Query: 179 NGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKA 222
+ EE+ +C+ R+ H+ PR F D P T TGK QK+ +RE +
Sbjct: 506 SEEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMREIS 550
|
Length = 558 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 9e-49
Identities = 74/175 (42%), Positives = 106/175 (60%), Gaps = 4/175 (2%)
Query: 62 TMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKD 121
M VP +GE+++R T+M+GY N +AT +AF GGWF SGDL + +GY+ + D
Sbjct: 362 NMNDVP--VGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVD 419
Query: 122 RSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG- 180
R KD+IISGGENI EVE+VL SHP ++E AV+GR D+ WGE P A +++ A
Sbjct: 420 RKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTL 479
Query: 181 EEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSISKKGTS 234
E++ + DRL Y P+ + D LP+ GK K LRE+ A ++ ++ S
Sbjct: 480 EDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGACVNVERRSAS 534
|
Length = 542 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 3e-48
Identities = 67/173 (38%), Positives = 99/173 (57%), Gaps = 7/173 (4%)
Query: 54 EIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHP 113
E+ I+ V GE++ +G V GYL AT++ F GWF++GD+G
Sbjct: 317 ELKIEK----DGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDE 372
Query: 114 DGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLK 173
+G++ + DR D+IISGGENI E+E VL SHP V EA VVG PDD WG+ P AFV
Sbjct: 373 EGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVK- 431
Query: 174 DGCVANGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKAM 225
EE+ ++C ++L Y P+ F E+LP+ ++GK ++ L++ + M
Sbjct: 432 -SGEVTEEELRHFCEEKLAKYKVPKRFYFVEELPRNASGKLLRHELKQLVEEM 483
|
Length = 483 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 1e-46
Identities = 80/228 (35%), Positives = 108/228 (47%), Gaps = 39/228 (17%)
Query: 2 EELGFTLTHAYGLTET-------YG----PGTVCVWKPDWNSLPREEQAKIKARQGVPHL 50
E G TL YG+TET PGTV P LP GV
Sbjct: 228 ERTGHTLLERYGMTETGMALSNPLDGERRPGTV--GLP----LP-----------GV--- 267
Query: 51 GLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLG 109
E+ I D + + A +GE+ RG V + Y +AT +AF GWF++GD+G
Sbjct: 268 ---EVRIVDEDGGEPLA--AGEVGEIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTGDVG 322
Query: 110 VRHPDGYIELKDRSKDIII-SGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCA 168
V DGY + R D II SGG +S +E+E L HP V E AV+G PD WGE A
Sbjct: 323 VVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVA 382
Query: 169 FVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQK 215
V + G E+ + R++L Y P+ V+ ++LP+ + GK QK
Sbjct: 383 VVVPEAGAALTLAELRAWAREKLAPYKIPKRVIVVDELPRNAMGKVQK 430
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 1e-46
Identities = 79/223 (35%), Positives = 118/223 (52%), Gaps = 16/223 (7%)
Query: 4 LGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTM 63
LG + A+G+TE G V + K D + + G P G+ E+ + D
Sbjct: 336 LGAKIVSAWGMTEN---GAVTLTKLD------DPDERASTTDGCPLPGV-EVRVVDA-DG 384
Query: 64 KSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRS 123
+P A IG + RG + GYLK + DG WF +GDL DGYI + RS
Sbjct: 385 APLP--AGQIGRLQVRGCSNFGGYLKRPQLNGTDADG-WFDTGDLARIDADGYIRISGRS 441
Query: 124 KDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEI 183
KD+II GGENI +E+E++L+ HP++ + A+V PD+ GE CAFV + G + EE+
Sbjct: 442 KDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFEEM 501
Query: 184 INYCRDR--LPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKA 224
+ + + + Y+ R VV + LP+T +GK QK+ LRE +
Sbjct: 502 VEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLREMLRG 544
|
Length = 547 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 159 bits (403), Expect = 1e-45
Identities = 79/223 (35%), Positives = 122/223 (54%), Gaps = 6/223 (2%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPV 61
+E G + HA+G+TE GT+C K + LP +EQ K+ +QG G+D + I
Sbjct: 315 DEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVD-MKIVGD- 372
Query: 62 TMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKD 121
+ +P D K G++ RG V++ Y + GWF +GD+ DG++++ D
Sbjct: 373 DGRELPWDGKAFGDLQVRGPWVIDRYFRG---DASPLVDGWFPTGDVATIDADGFMQITD 429
Query: 122 RSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGE 181
RSKD+I SGGE IS+I++E+V +HP+V EAA + W E P V + G E
Sbjct: 430 RSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVTRE 489
Query: 182 EIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAK 223
E++ + ++ + P VVF D +P T+TGK QK LRE+ +
Sbjct: 490 ELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFR 532
|
Length = 539 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 2e-45
Identities = 78/217 (35%), Positives = 106/217 (48%), Gaps = 16/217 (7%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPV 61
E LG L +G+ E G V + D + I QG P DEI I D
Sbjct: 277 ERLGCPLQQVFGMAE----GLVNYTRLD------DPPDVIMRTQGRPISPADEIRIVDDQ 326
Query: 62 TMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIELK 120
+ VP +GE++ RG + GY + + AF G++R+GDL DGY +
Sbjct: 327 G-EPVPPGE--VGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRIDADGYYRVV 383
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
R KD I GGE IS E+E++L SHP+V +AAVVG PD+ GE CAFV + G
Sbjct: 384 GRIKDQINRGGEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERICAFVVPRGGAAPTL 443
Query: 181 EEIINYCRDR-LPHYMAP-RTVVFEDLPKTSTGKTQK 215
E+ + R++ L + P R V + LP T GK K
Sbjct: 444 AELRAFLREQGLAKFKLPDRLEVVDSLPLTPVGKVDK 480
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 1e-44
Identities = 77/225 (34%), Positives = 111/225 (49%), Gaps = 14/225 (6%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPV 61
+ GF +G+TET P L E+ + G P L + ++ D
Sbjct: 285 IDRGFLFGQGFGMTET---------SPTVFMLSEEDARRKVGSIGKPVL-FCDYELIDEN 334
Query: 62 TMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKD 121
K + +GE++ RG VM Y AT++ GW +GDL DG++ +
Sbjct: 335 KNKVEVGE---VGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDEDGFVYIVG 391
Query: 122 RSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGE 181
R K++IISGGENI +EVE V+ V E AVVGR WGE P AF+ K V +
Sbjct: 392 RKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEK 451
Query: 182 EIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKAM 225
++I +CR L Y P+ +VF ++LPK +TGK QK L + K+
Sbjct: 452 DVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLKSR 496
|
Length = 496 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 4e-44
Identities = 64/154 (41%), Positives = 88/154 (57%), Gaps = 2/154 (1%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIELKDRSKDIIISGGE 132
GE++ RG + GY + +AT AF G GWFR+GD+ R DG+ + DR KD+ ISGGE
Sbjct: 333 GELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGE 392
Query: 133 NISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLP 192
N+ E+E+VL HP + E AVVG D WGE + DG + E I ++ RL
Sbjct: 393 NVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLSTRLA 452
Query: 193 HYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225
Y P+ + D LP+T++GK QK LR+ A
Sbjct: 453 KYKVPKHLRLVDALPRTASGKLQKARLRDALAAG 486
|
Length = 488 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 5e-43
Identities = 64/153 (41%), Positives = 88/153 (57%), Gaps = 4/153 (2%)
Query: 71 KTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISG 130
IGE+ RG++ GY + T++ F G W R+GD R DGY RS D++
Sbjct: 354 GEIGELWVRGDSSAAGYWNRREKTRETFVGEWTRTGDKYYRDEDGYYWYCGRSDDMLKVS 413
Query: 131 GENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGE---EIINYC 187
G +S EVE L HP+VLEAAVVG D+ P AFV LKDG + E E+ ++
Sbjct: 414 GIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKPKAFVVLKDGYQPSPELETELKDFV 473
Query: 188 RDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLR 219
+D+L Y PR + F ++LPKT+TGK Q++ LR
Sbjct: 474 KDKLAPYKYPRWIEFVDELPKTATGKIQRFKLR 506
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 7e-43
Identities = 71/223 (31%), Positives = 104/223 (46%), Gaps = 15/223 (6%)
Query: 4 LGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTM 63
G + YG+TE G + + PR + G+ L + +
Sbjct: 146 TGVPVVEGYGMTEGTGVSAI-----NPRGGPRRPGS-----VGLR-LPYTRVRVAKLDAG 194
Query: 64 KSVPSDAKT--IGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKD 121
++ D +G + RG V GYL + + GW +GDLG DGY+ L
Sbjct: 195 GALGRDCAPGEVGVLAIRGPNVFPGYLNDAHNAGARLEDGWLNTGDLGRIDADGYLWLTG 254
Query: 122 RSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGE 181
R+KD+II GG NI +E L HP+V AA VGRPD + GE P A+V+LK G
Sbjct: 255 RAKDLIIRGGHNIDPQMIEEALLRHPAVALAAAVGRPDAYAGELPVAYVQLKPGATVTEG 314
Query: 182 EIINYCRDRLPHYMA-PRTV-VFEDLPKTSTGKTQKYVLREKA 222
E++ + + R+P A P+ + + + LP T+ GK K LR A
Sbjct: 315 ELLAFVKARIPERAAVPKAIYIIDALPLTAVGKIFKPRLRCDA 357
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 4e-42
Identities = 79/215 (36%), Positives = 107/215 (49%), Gaps = 21/215 (9%)
Query: 11 AYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDA 70
YGLTET+ P G+P G D + DP T + +P
Sbjct: 230 GYGLTETHTCTHF---NPP--------DRPKPQCLGIPVFGTD-ARVIDPETGEELPPG- 276
Query: 71 KTIGEVMFRGNTVMNGYLKNLKATQDAF---DG-GWFRSGDLGVRHPDGYIELKDRSKDI 126
GE++ RG V GY +AT ++F DG +FR+GDLG +GY DR K +
Sbjct: 277 -EEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRM 335
Query: 127 IISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN--GEEII 184
I G + EVE++L+ HP+VLE V+GRPD GE AFV LK E+II
Sbjct: 336 INVSGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVLKPDYRGKVTEEDII 395
Query: 185 NYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVL 218
+CR+R+ Y PR + F D LPKT++GK +L
Sbjct: 396 EWCRERMAAYKYPRIIEFVDELPKTASGKVLWRLL 430
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 8e-42
Identities = 82/232 (35%), Positives = 117/232 (50%), Gaps = 25/232 (10%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQ--GVPHLGLDEIDIKD 59
E G YGLTET +S P + + K Q G+P G+D + D
Sbjct: 327 ELTGLDYVEGYGLTETMAQT---------HSNPPD-RPK---LQCLGIPTFGVDA-RVID 372
Query: 60 PVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF---DGG-WFRSGDLGVRHPDG 115
P T++ +P +GE++ G V GY +AT +AF DG +FR+GDLG +G
Sbjct: 373 PETLEELP--PGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEG 430
Query: 116 YIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDG 175
Y + DR K +I + G + EVE++L+ HP++ EA V+ PD GET A V L+
Sbjct: 431 YFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPE 490
Query: 176 CVANG--EEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKA 224
EEII + R+ + Y PR V F D LPK+ +GK L+E+ KA
Sbjct: 491 ARGKTTEEEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQEKA 542
|
Length = 546 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 1e-41
Identities = 77/226 (34%), Positives = 107/226 (47%), Gaps = 15/226 (6%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSL-PREEQAKIKA-RQGVPHLGLDEIDIK 58
G + YGLTE CV +S+ P + + +I + +P+ + + I
Sbjct: 354 EAATGVRIVEGYGLTEA-----TCV-----SSVNPPDGERRIGSVGLRLPYQRV-RVVIL 402
Query: 59 DPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIE 118
D +G + G V +GYL+ + GW +GDLG DGY
Sbjct: 403 DDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLEDGWLNTGDLGRIDADGYFW 462
Query: 119 LKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVA 178
L R+KD+II GG NI +E L HP+V AA VGRPD H GE P A+V+LK G A
Sbjct: 463 LTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASA 522
Query: 179 NGEEIINYCRDRLPHYMA-PRTVVF-EDLPKTSTGKTQKYVLREKA 222
E++ + RD + A P+ V + LPKT+ GK K LR A
Sbjct: 523 TEAELLAFARDHIAERAAVPKHVRILDALPKTAVGKIFKPALRRDA 568
|
Length = 632 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 1e-41
Identities = 75/234 (32%), Positives = 108/234 (46%), Gaps = 22/234 (9%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
LG + YG TET G + P G+P G + D
Sbjct: 311 YSALGVWILDIYGQTET---GMGFIA-----GRPP----VKNGSSGLPLPGY-AVRRVDD 357
Query: 61 VTMKSVPSDAKTIGEVMFRGNT--VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIE 118
VP GE++ R + Y + + ++A+ G W+R+GD R DGY
Sbjct: 358 EG-NPVPPGV---GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDGYFW 413
Query: 119 LKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVA 178
L RS D+I G+ I +E+ESVL +HP+V EAAVVG PD G+ AFV L G
Sbjct: 414 LHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEP 473
Query: 179 NG--EEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKAMGSIS 229
N EEI + + + PR + F ++LPKT++GK Q+ +LR+ +S
Sbjct: 474 NELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILHKGEDLS 527
|
Length = 528 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 2e-41
Identities = 86/212 (40%), Positives = 116/212 (54%), Gaps = 14/212 (6%)
Query: 11 AYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDA 70
AYGLTET T+ RE + + + H+ EI I D + +P +
Sbjct: 296 AYGLTETCSGDTLM-------EAGREIEKIGSTGRALAHV---EIRIADGAG-RWLPPNM 344
Query: 71 KTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISG 130
K GE+ RG V GY K+ + T +AF G WFRSGD+G +G++ L DR KD+IISG
Sbjct: 345 K--GEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDEEGFLYLTDRKKDMIISG 402
Query: 131 GENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDR 190
GENI++ EVE V++ P V EAAV+G DD WGE A V L G E + +CR R
Sbjct: 403 GENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRHCRQR 462
Query: 191 LPHYMAPRTVVFED-LPKTSTGKTQKYVLREK 221
L + PR + D LP+ +GK K VLR++
Sbjct: 463 LASFKVPRQLKVRDELPRNPSGKVLKRVLRDE 494
|
Length = 497 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 9e-41
Identities = 78/220 (35%), Positives = 109/220 (49%), Gaps = 19/220 (8%)
Query: 8 LTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTM-KSV 66
L YGLTET P V N + + + GVP E+ I DP +++
Sbjct: 364 LVEGYGLTET-SPIIVG------NPMSDDRRP---GYVGVP-FPDTEVRIVDPEDPDETM 412
Query: 67 PSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDI 126
P + GE++ RG V GY + T +F GWFR+GD+ V DG+I + DR K++
Sbjct: 413 PDGEE--GELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKEL 470
Query: 127 IISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINY 186
II+GG N+ EVE VL HP V +AAVVG P + E A V L+ G + E + Y
Sbjct: 471 IITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAY 530
Query: 187 CRDRLPHYMAPRT-VVFEDLPKTSTGKTQKYVLREKAKAM 225
CR+ L Y PR ++LP+ GK V R + +
Sbjct: 531 CREHLTRYKVPRRFYHVDELPRDQLGK----VRRREVREE 566
|
Length = 573 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 8e-40
Identities = 71/215 (33%), Positives = 104/215 (48%), Gaps = 25/215 (11%)
Query: 7 TLTHAYGLTETYGPGTVCVW-KPDWNS---LPREEQAKIKARQGVPHLGLDEIDIKDPVT 62
T+ YG+TET T+ S L +AKI G LG +E
Sbjct: 291 TIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPNVEAKIVDEDGGKSLGPNER------- 343
Query: 63 MKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKD 121
GE+ +G +M GYL N +AT++ D GW +GD+G DG + D
Sbjct: 344 -----------GELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFDEDGNFYIVD 392
Query: 122 RSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGE 181
R K++I G + E+E+VL HP V +AAV+G PD+ GE P A+V LK G +
Sbjct: 393 RKKELIKYKGYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVLKPGSKLTEQ 452
Query: 182 EIINYCRDRLPHYMAPR-TVVF-EDLPKTSTGKTQ 214
E+ +Y ++ Y R VVF +++PK+ +GK
Sbjct: 453 EVKDYVAKKVAKYKQLRGGVVFVDEIPKSPSGKIL 487
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 9e-40
Identities = 74/226 (32%), Positives = 108/226 (47%), Gaps = 18/226 (7%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREE----QAKIKARQGVPHLGLDEID 56
+E G YG TE P + L + + K G P GL +
Sbjct: 302 IERFGPIFAQYYGQTEA--PMVITY-------LRKRDHDPDDPKRLTSCGRPTPGLR-VA 351
Query: 57 IKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGY 116
+ D + V +GE+ RG VM+GY + T +AF GW +GD+ DG+
Sbjct: 352 LLDED-GREVAQG--EVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGF 408
Query: 117 IELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGC 176
+ DR KD+I++GG N+ EVE VL HP+V + AV+G PD+ WGE A V L+ G
Sbjct: 409 YYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGA 468
Query: 177 VANGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREK 221
+ E+ + ++R AP+ V F + LP T+ GK K LR +
Sbjct: 469 AVDAAELQAHVKERKGSVHAPKQVDFVDSLPLTALGKPDKKALRAR 514
|
Length = 524 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 1e-39
Identities = 56/154 (36%), Positives = 82/154 (53%), Gaps = 7/154 (4%)
Query: 73 IGEVMFRGNTVMNGYLKNLKATQDAF------DGGWFRSGDLGVRHPDGYIELKDRSKDI 126
+GE++ RG VM GY + +AT + +GDL +GY+ R D+
Sbjct: 197 VGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDM 256
Query: 127 IISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINY 186
I + G +S E+E V+ +HP V EAAV+G PD G+ A V DG + +E++ +
Sbjct: 257 IKTRGYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAIVAVVVSADGESLDEKELLKH 316
Query: 187 CRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLR 219
CR LP+YM P +VF D LPK + GK + LR
Sbjct: 317 CRKHLPNYMVPAEIVFVDSLPKNANGKVDRSALR 350
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 141 bits (356), Expect = 1e-39
Identities = 70/215 (32%), Positives = 103/215 (47%), Gaps = 24/215 (11%)
Query: 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVT 62
+ G + +YG+TET V P E + G P G EI IK
Sbjct: 241 QYGLPIYLSYGMTETCS--QVTTATP--------EMLHARPDVGRPLAGR-EIKIKVD-- 287
Query: 63 MKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDR 122
+ + GE+M +G +M GYL + T GWF +GD+G +G++ + R
Sbjct: 288 ------NKEGHGEIMVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGR 341
Query: 123 SKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKL-KDGCVANGE 181
D+IISGGENI E+E+VL+ HP + EA VV +PD WG+ P A++ D A
Sbjct: 342 RDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESDISQA--- 398
Query: 182 EIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQK 215
++I Y ++L Y P D LP ++GK +
Sbjct: 399 KLIAYLTEKLAKYKVPIAFEKLDELPYNASGKILR 433
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 1e-39
Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 7/170 (4%)
Query: 54 EIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHP 113
E + D + + VP+ T+G++ RG ++ GY + TQ GW R+GD R
Sbjct: 270 EARLVDE-SGREVPAG--TVGDLWVRGPSLAPGYWNLPEKTQRTLRDGWLRTGDRFSRDA 326
Query: 114 DGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLK 173
DG+ + R+ D+I G+ +S +EVE+ L HP+V EAAVV PD+ AFV +
Sbjct: 327 DGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLKAFVVPR 386
Query: 174 DGCVANG---EEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLR 219
G ++ + R+RL Y PR + F + LP+T+TGK Q++ LR
Sbjct: 387 PGEAIQQLLERDLHRFLRERLAPYKCPRQIEFLDTLPRTATGKLQRFRLR 436
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 140 bits (353), Expect = 1e-38
Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 20/223 (8%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPV 61
E LG + A+G+TE G V V +PD E+A + +P + + ID
Sbjct: 332 ELLGALIVSAWGMTEN---GAVTVTEPD----DALEKASTTDGRPLPGVEVKVIDANG-- 382
Query: 62 TMKSVPSDAKTIGEVMFRGNTVMNGYLK--NLKATQDAFDGGWFRSGDLGVRHPDGYIEL 119
+ G ++ RG + GYLK +L +T DA GWF +GDL + +GYI +
Sbjct: 383 --AKLS--QGETGRLLVRGCSNFGGYLKRPHLNST-DA--EGWFDTGDLAFQDAEGYIRI 435
Query: 120 KDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN 179
RSKD+II GGENI +E+E++L+ HP+V + A+V PD+ GE CA V K GC +
Sbjct: 436 NGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLD 495
Query: 180 GEEIINYCRDR--LPHYMAPRTVVFEDLPKTSTGKTQKYVLRE 220
++ + + + Y+ R V + LP T GK QK+ LRE
Sbjct: 496 FAAMVAFLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLRE 538
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 4e-38
Identities = 76/213 (35%), Positives = 113/213 (53%), Gaps = 22/213 (10%)
Query: 11 AYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQG--VPHLGLDEIDIKDPVTMKSVPS 68
YG+TE+ T+C E+ K + G VP++ E I DP T +S+P
Sbjct: 307 GYGMTESSPVTTMC--------PVPEKDPKPGS-VGRLVPNV---EAKIVDPETGESLP- 353
Query: 69 DAKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIELKDRSKDII 127
GE+ RG VM GYL N +AT + D GW +GDLG DGY+ + DR K++I
Sbjct: 354 -PNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDEDGYLFIVDRLKELI 412
Query: 128 ISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYC 187
G ++ E+E++L SHP + +AAV+ PD+ GE P AFV + G + +E++ +
Sbjct: 413 KYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMAFVVRQPGSELSEDEVMQFV 472
Query: 188 RDRLPHYMAPRTVVFEDL-PKTSTGKTQKYVLR 219
++ Y R VVF D PK+ +GK +LR
Sbjct: 473 AKQVAPYKKVRKVVFVDAIPKSPSGK----ILR 501
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 6e-38
Identities = 65/155 (41%), Positives = 86/155 (55%), Gaps = 5/155 (3%)
Query: 72 TIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIELKDRSKDIIISG 130
IG V F + Y + + T A + GW GD+G DGY+ L DR D+IISG
Sbjct: 339 EIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISG 398
Query: 131 GENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN---GEEIINYC 187
G NI E+E++L +HP V + AV G PD+ GE A V+ DG A E+I +
Sbjct: 399 GVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWL 458
Query: 188 RDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREK 221
R RL HY PR++ FED LP+T TGK K LR++
Sbjct: 459 RGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLRDR 493
|
Length = 502 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 8e-38
Identities = 75/230 (32%), Positives = 113/230 (49%), Gaps = 8/230 (3%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
+ +LG L +GL E G + V P + A+I G G+ E+ I+D
Sbjct: 301 LAKLGKVLVQYFGLGEV--TGNITVLPPALHDAEDGPDARI-GTCGFERTGM-EVQIQDD 356
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
+ +P GE+ G V GY N +A AF GWFR+GDLG G++ +
Sbjct: 357 E-GRELP--PGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGFLYIT 413
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
R+ D+ ISGG N+ E+E L +HP+V E AV+G PD WGE A +DG +
Sbjct: 414 GRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDE 473
Query: 181 EEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSIS 229
E++ + ++ Y P+ F D LPK+ GK K ++RE+ + G +
Sbjct: 474 AELLAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEERGLLD 523
|
Length = 528 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 1e-37
Identities = 81/227 (35%), Positives = 107/227 (47%), Gaps = 24/227 (10%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVC--VWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIK 58
+ELG T+ YG TE C + S+ G P G E+ +
Sbjct: 228 RDELGLTVNEFYGQTEANLVVGNCAALGPARPGSM------------GKPVPG-HEVAVV 274
Query: 59 DPVTMKSVPSDAKTIGEV-MFRGNTVM-NGYLKNLKATQDAFDGGWFRSGDLGVRHPDGY 116
D P +GE+ + R + VM GY N +AT F G W +GDLG R DGY
Sbjct: 275 DDAGRPVPPG---EVGEIAVKRPDPVMFLGYWNNPEATAAKFAGDWLLTGDLGRRDADGY 331
Query: 117 IELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGC 176
+ K R+ D+I S G I E+E L HP+VLEAAVVG PD GE AFV L +G
Sbjct: 332 LWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPERGEIVKAFVVLAEGV 391
Query: 177 VAN---GEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLR 219
+ E+ + RL + PR + F D LP T+TGK ++ LR
Sbjct: 392 EPSDELATELQELVKSRLAAHEYPREIEFVDELPMTTTGKIRRRELR 438
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 3e-37
Identities = 71/169 (42%), Positives = 95/169 (56%), Gaps = 9/169 (5%)
Query: 61 VTMKSVPSDAKTI-----GEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPD 114
V +K V KT+ GE RG V GYL + T A D GW+ SGDL
Sbjct: 364 VEIKVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEA 423
Query: 115 GYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKD 174
GYI++ R KDII+ GGENIS+ EVE +L HP + +A VV PD+ GE CA+V LK
Sbjct: 424 GYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKA 483
Query: 175 GC-VANGEEIINY-CRDRLPHYMAP-RTVVFEDLPKTSTGKTQKYVLRE 220
EE++ + R R+ Y P VV + LP+T++GK QK++LR+
Sbjct: 484 PHHSLTLEEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRK 532
|
Length = 547 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 2e-35
Identities = 68/186 (36%), Positives = 94/186 (50%), Gaps = 17/186 (9%)
Query: 42 KARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF--D 99
+A G H+ LD+ +P G + F G YL + T +A D
Sbjct: 332 RAMFGDLHI-LDD-------DGAELP--PGEPGTIWFEGGR-PFEYLNDPAKTAEARHPD 380
Query: 100 GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPD 159
G W GD+G DGY+ L DR+ +IISGG NI E E++L +HP V +AAV G P+
Sbjct: 381 GTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPN 440
Query: 160 DHWGETPCAFVKLKDGCVAN---GEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQK 215
+ GE A V+ DG E+I +CR RL PR++ FED LP+ TGK K
Sbjct: 441 EDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYK 500
Query: 216 YVLREK 221
+LR++
Sbjct: 501 RLLRDR 506
|
Length = 511 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 2e-35
Identities = 67/157 (42%), Positives = 88/157 (56%), Gaps = 5/157 (3%)
Query: 66 VPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIELKDR-S 123
VP D +T+GE+ RG T+ +GYL AT AF GWFR+GD+ V PDG + R S
Sbjct: 314 VPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRES 373
Query: 124 KDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEI 183
D+I SGG I E+E+ L HP V EAAVVG PDD G+ A+V D +E+
Sbjct: 374 TDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADD--VAADEL 431
Query: 184 INYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLR 219
I++ +L + PR V F D LP+ + GK K L
Sbjct: 432 IDFVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQLL 468
|
Length = 471 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 3e-35
Identities = 59/142 (41%), Positives = 80/142 (56%), Gaps = 4/142 (2%)
Query: 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESV 142
+GY + + T + G W+ +GDL R DGY R+ D+IIS G I +VES
Sbjct: 299 WFSGYWDDPEKTAELIAGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESA 358
Query: 143 LFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN---GEEIINYCRDRLPHYMAPRT 199
L HP+V EAAVVG PD GE AFV LK+G + EE+ + + RL + PR
Sbjct: 359 LLEHPAVAEAAVVGVPDPLRGEIVKAFVVLKEGYAGSDELAEELQLFVKKRLSAHAYPRE 418
Query: 200 VVF-EDLPKTSTGKTQKYVLRE 220
V F LPKT +GK Q+++LR+
Sbjct: 419 VEFVPALPKTPSGKIQRFLLRQ 440
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 3e-35
Identities = 58/149 (38%), Positives = 78/149 (52%), Gaps = 4/149 (2%)
Query: 76 VMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENIS 135
V R + GYLK+ + T+ G W+ +GD ++ DGY R+ D+I S G I
Sbjct: 282 VKPRPPGLFRGYLKDPEKTEATIRGDWYLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIG 341
Query: 136 TIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDG---CVANGEEIINYCRDRLP 192
EVES L HP+V EAAVVG PD GE AFV L G +E+ + + R
Sbjct: 342 PFEVESALIEHPAVAEAAVVGSPDPVRGEVVKAFVVLAPGYQPSEELAKELQEHVKKRTA 401
Query: 193 HYMAPRTVVF-EDLPKTSTGKTQKYVLRE 220
Y PR + F E+LPKT +GK ++ LR
Sbjct: 402 PYKYPREIEFVEELPKTVSGKIRRVELRA 430
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 4e-35
Identities = 70/226 (30%), Positives = 107/226 (47%), Gaps = 29/226 (12%)
Query: 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMK 64
G + YG+TET +V P + + + I I P T+
Sbjct: 351 GCAICEGYGMTETSPVVSVN---------PSQ------------AIQVGTIGIPVPSTLC 389
Query: 65 SVPSDAKT------IGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYI 117
V D +GE+ +G VM GY + +AT + D GW ++GD+ + DGY+
Sbjct: 390 KVIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYM 449
Query: 118 ELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCV 177
+ DR KD+I+ G N+ E+E VL + P VL+ A +G PD+ GE FV +K G
Sbjct: 450 RIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGET 509
Query: 178 ANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKA 222
E+++ + R L Y P+ V F D LP T+ GK + LR++
Sbjct: 510 LTKEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRRELRDEE 555
|
Length = 562 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 4e-35
Identities = 66/172 (38%), Positives = 93/172 (54%), Gaps = 6/172 (3%)
Query: 54 EIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDA-FDGGWFRSGDLGVRH 112
E+ I+D +P GE+ RG VM GY T G+FR+GD+GV
Sbjct: 390 EVSIRDD-DGNDLP--LGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMD 446
Query: 113 PDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKL 172
GY ++ DR KD+I+ G N+ E+E V+ SHP VLE A VG PD+H GE FV
Sbjct: 447 ERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVK 506
Query: 173 KDGCVANGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAK 223
KD + E++ +C++RL +Y P+ V F +LPKT+ GK + LR+
Sbjct: 507 KDPALTE-EDVKAFCKERLTNYKRPKFVEFRTELPKTNVGKILRRELRDGKA 557
|
Length = 557 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 2e-34
Identities = 51/151 (33%), Positives = 67/151 (44%), Gaps = 16/151 (10%)
Query: 7 TLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSV 66
L + YG TET T + G P L E+ + D + V
Sbjct: 275 PLVNGYGPTETTVVATANLPGDPEVKPGS---------IGRP-LPGVEVKVLDE-EGEPV 323
Query: 67 PSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWF--RSGDLGVRHPDGYIELKDRS 123
P +GE+ RG V GYL + + T + F GW R+GDLG DGY+E+ R
Sbjct: 324 PPGE--VGELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDLGRWDEDGYLEILGRK 381
Query: 124 KDIIISGGENISTIEVESVLFSHPSVLEAAV 154
D + GE I E+E+VL HP V EAAV
Sbjct: 382 DDQVKIRGERIEPGEIEAVLLEHPGVAEAAV 412
|
Length = 412 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 2e-34
Identities = 77/225 (34%), Positives = 100/225 (44%), Gaps = 24/225 (10%)
Query: 2 EELGFTLTHAYGLTETYGP--GTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKD 59
E G L YG TET T +P + G +DE D +
Sbjct: 314 ERFGVDLLDGYGSTETNFVIAVTHGSQRPGSMG---------RLAPGFEARVVDEHDQEL 364
Query: 60 PVTMKSVPSDAKTIGEVMFRGN---TVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGY 116
P GE++ R + GY + T +A+ WF +GD VR DG+
Sbjct: 365 P---------DGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGW 415
Query: 117 IELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGC 176
DR KD I GENIS+ EVE VL SHP+V AAV P + + A V L+DG
Sbjct: 416 FRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGT 475
Query: 177 VANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLRE 220
++ +C RL ++ PR V F LPKT GK QK+VLRE
Sbjct: 476 ALEPVALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLRE 520
|
Length = 542 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 2e-34
Identities = 73/234 (31%), Positives = 107/234 (45%), Gaps = 38/234 (16%)
Query: 5 GFTLTHAYGLTET-------YG----PGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLD 53
G + YG+TET Y GTV G P G+
Sbjct: 294 GHAILERYGMTETNMNTSNPYDGERRAGTV----------------------GFPLPGV- 330
Query: 54 EIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF-DGGWFRSGDLGVRH 112
+ + DP T +P IG + +G V GY + + T + F G+F +GDLG
Sbjct: 331 SLRVTDPETGAELPPGE--IGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKID 388
Query: 113 PDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKL 172
GY+ + R KD+IISGG N+ EVE + P V+E+AV+G P +GE A V
Sbjct: 389 ERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVP 448
Query: 173 KDGCVANGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKAM 225
K G + I+ + RL + P+ V F ++LP+ + GK QK +LRE+ +
Sbjct: 449 KPGAALDEAAILAALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLREQYADL 502
|
Length = 504 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 5e-33
Identities = 78/240 (32%), Positives = 116/240 (48%), Gaps = 27/240 (11%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPV 61
E G + H +G+TET GTV +P + + E + + QG L+ + D
Sbjct: 320 ERYGVDVVHVWGMTETSPVGTVA--RPP-SGVSGEARWAYRVSQGRFPASLEYRIVNDGQ 376
Query: 62 TMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDA----FDG-------------GWFR 104
M+S + GE+ RGN V Y + F G GW R
Sbjct: 377 VMESTDRNE---GEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLR 433
Query: 105 SGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGE 164
+GD+G DG++ + DR++D+I SGGE I + ++E+ + + P V+E AV+G PDD WGE
Sbjct: 434 TGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGE 493
Query: 165 TPCAFVKLKDGC---VANGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLRE 220
P A L G E + + RDRLP++M P F +++ KTS GK K LR+
Sbjct: 494 RPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQ 553
|
Length = 576 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 5e-33
Identities = 67/232 (28%), Positives = 103/232 (44%), Gaps = 37/232 (15%)
Query: 2 EELGFTLTHAYGLTETYG------PGTVCVWKPDWNSLPRE---EQAKIKARQGVPHLGL 52
E G L +YG+TET PG K W S+ R +A+I+ P
Sbjct: 309 ERFGVRLLTSYGMTETIVGIIGDRPGD----KRRWPSIGRPGFCYEAEIRDDHNRP---- 360
Query: 53 DEIDIKDPVTMKSVPSDAKTIGEVMFRG---NTVMNGYLKNLKATQDAFDG-GWFRSGDL 108
+P A IGE+ +G T+ Y + KAT + GW +GD
Sbjct: 361 -------------LP--AGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDT 405
Query: 109 GVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCA 168
G +G+ DR ++I GGEN+S +E+E+++ +HP + + VVG D E A
Sbjct: 406 GYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKA 465
Query: 169 FVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLR 219
FV L +G + EE +C + + P + +DLP+ +GK K L+
Sbjct: 466 FVVLNEGETLSEEEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517
|
Length = 517 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 5e-32
Identities = 59/171 (34%), Positives = 94/171 (54%), Gaps = 2/171 (1%)
Query: 54 EIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHP 113
E I D T + +P A+ GE++ R +++ GY +AT +A GW +GD+G
Sbjct: 397 EFKICDFETGELLPLGAE--GEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDE 454
Query: 114 DGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLK 173
G++ R K+++ G ++ EVE++L HP+VL +AVVGRPD G+ P AFV+LK
Sbjct: 455 QGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLK 514
Query: 174 DGCVANGEEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKA 224
G + +CR+ + Y P + + LP T+TGK +K L+ A+
Sbjct: 515 PGADLTAAALQAWCRENMAVYKVPEIRIVDALPMTATGKVRKQDLQALAEE 565
|
Length = 567 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 9e-32
Identities = 70/212 (33%), Positives = 100/212 (47%), Gaps = 11/212 (5%)
Query: 2 EELGFTLTHAYGLTE-TYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
E + A+G+TE T+ T + P + G +I I
Sbjct: 317 TEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGA------QIRIVGS 370
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
+P A +GEV RG TV+ GYL + T F GW R+GDLG G + ++
Sbjct: 371 ---DGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAGDLSIR 427
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
R K++I GGE IS VE VL SHP+V+EAAV G PD +GE A + ++
Sbjct: 428 GRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPTA 487
Query: 181 EEIINYCRDRLPHYMAPRTV-VFEDLPKTSTG 211
EE++ +CR+RL + P + LP T+ G
Sbjct: 488 EELVQFCRERLAAFEIPASFQEASGLPHTAKG 519
|
Length = 534 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 1e-31
Identities = 76/225 (33%), Positives = 113/225 (50%), Gaps = 27/225 (12%)
Query: 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMK 64
G T+ YGLTET P ++ P E A++ G+P G +K
Sbjct: 358 GCTIVEGYGLTET---------SPVASTNPYGELARL-GTVGIPVPG---------TALK 398
Query: 65 SVPSDAKTI-----GEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIE 118
+ D + GE+ +G VM GY + +AT +A D GWF++GD+ V PDG++
Sbjct: 399 VIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVR 458
Query: 119 LKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVA 178
+ DR KD+II G N+ E+E V+ +HP V A +G PD+ GE FV +D ++
Sbjct: 459 IVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGLS 518
Query: 179 NGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKA 222
EE+ YC++ Y P+ +V D LP T GK + LR+ A
Sbjct: 519 V-EELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELRDIA 562
|
Length = 562 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 2e-31
Identities = 76/230 (33%), Positives = 107/230 (46%), Gaps = 26/230 (11%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKA-RQGVPHLGLDEIDIKDP 60
+ G T+ YG TET T + K+K G P G + + D
Sbjct: 221 KAWGLTIRDGYGQTET----TAMIGNSPGQ--------KVKPGSMGRPLPGYR-VVLLDD 267
Query: 61 VTMKSVPSDAKTIGEVMF----RGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGY 116
K +P T GE+ R +M GY+ + + T AF GG++R+GD R DGY
Sbjct: 268 EG-KEIPV---TEGEIALDLGDRPIGLMLGYMGDPEKTAAAFRGGYYRTGDKAYRDEDGY 323
Query: 117 IELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGC 176
+ R+ D+ S IS EVES L HP+V EAAVV PD P A++ LK G
Sbjct: 324 LWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAVPKAYIVLKPGY 383
Query: 177 VANGE---EIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKA 222
+ E E+ + R+RL Y R + F +LPKT +GK ++ LR+
Sbjct: 384 EPSRELALELFAHVRERLAPYKRIRRIEFVGELPKTISGKIRRVELRKIE 433
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 3e-31
Identities = 59/152 (38%), Positives = 88/152 (57%), Gaps = 2/152 (1%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGEN 133
GE+ +G VM GY + +AT + GW +GD+ V +G++ + DR KD+I+ G N
Sbjct: 405 GELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFN 464
Query: 134 ISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPH 193
+ E+E V+ HP VLE A VG P + GE FV KD + EE+I +CR L
Sbjct: 465 VYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPSLTE-EELITHCRRHLTG 523
Query: 194 YMAPRTVVF-EDLPKTSTGKTQKYVLREKAKA 224
Y P+ V F ++LPK++ GK + LR++A+A
Sbjct: 524 YKVPKLVEFRDELPKSNVGKILRRELRDEARA 555
|
Length = 560 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 6e-31
Identities = 68/180 (37%), Positives = 100/180 (55%), Gaps = 7/180 (3%)
Query: 54 EIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRH 112
E+ DP T +S+P + T GE+ R VM GY N + T D GW +GD+G
Sbjct: 371 EVKFIDPDTGRSLPKN--TPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYID 428
Query: 113 PDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKL 172
DG I + DR K++I G ++ E+E++L +HPSV +AAVV PD+ GE P A V +
Sbjct: 429 DDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVI 488
Query: 173 KDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSISKK 231
+ E+I+N+ + HY R V F D +PK+ +GK + +L+EK M SI+K
Sbjct: 489 NPKAKESEEDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEK---MLSINKA 545
|
Length = 546 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 1e-30
Identities = 60/161 (37%), Positives = 84/161 (52%), Gaps = 8/161 (4%)
Query: 63 MKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDR 122
VP G + RG T YL + + Q+ GW +GD+ + DGY R
Sbjct: 331 GNEVP--RGEAGRLAVRGPTGCR-YL-DDERQQEYVRDGWNVTGDIFRQDEDGYFHYVAR 386
Query: 123 SKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG-- 180
S D+I+S G NI+ EVE L +HP V E AV+G PD+ G+ CA + L+DG A
Sbjct: 387 SDDMIVSAGYNIAAPEVEDALLTHPDVAECAVIGVPDEERGQIVCAHIVLRDGTKATELL 446
Query: 181 -EEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLR 219
E + ++ + + Y PR + F D LPKT TGK Q++ LR
Sbjct: 447 AERLQDFVKAVIAPYKYPREINFVDALPKTQTGKIQRFRLR 487
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 2e-30
Identities = 64/158 (40%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 67 PSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDI 126
A GE++ G + Y N T+D F G W RSGD VR+ DG R+ D+
Sbjct: 350 DVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDGSYTYAGRTDDM 409
Query: 127 IISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG---EEI 183
+ G +S E+ES L HP+VLEAAVVG D+ P AF+ L+ G + E+
Sbjct: 410 LKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETEL 469
Query: 184 INYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLRE 220
+ +DRL Y PR +VF +DLPKT+TGK Q++ LRE
Sbjct: 470 KEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLRE 507
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 116 bits (291), Expect = 6e-30
Identities = 61/152 (40%), Positives = 85/152 (55%), Gaps = 1/152 (0%)
Query: 73 IGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGE 132
IGE++ +G +M GY + T GW +GD+G DG+ +KDR KD+I++ G
Sbjct: 403 IGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGF 462
Query: 133 NISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLP 192
N+ EVE VL+ H V E +G PD + GET AFV LK+G + EE+ + R L
Sbjct: 463 NVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFARKYLA 522
Query: 193 HYMAPRTVVFED-LPKTSTGKTQKYVLREKAK 223
Y P+ F D LPKT+ GK + VL E+ K
Sbjct: 523 AYKVPKVYEFRDELPKTTVGKILRRVLIEEEK 554
|
Length = 563 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 6e-30
Identities = 57/147 (38%), Positives = 81/147 (55%), Gaps = 10/147 (6%)
Query: 77 MFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENIST 136
MFRG YL N + +F GW+ +GDL R DGY R+ D+I + G +
Sbjct: 302 MFRG------YLGNEERYASSFVDGWYLTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGP 355
Query: 137 IEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN---GEEIINYCRDRLPH 193
EVES L HP+V EA V+G+PD GE AFV L+ G + E++ + R RL
Sbjct: 356 FEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSLRPGFEPSEELRRELLTFARQRLGA 415
Query: 194 YMAPRTVVF-EDLPKTSTGKTQKYVLR 219
+APR + F ++LPKT +GK + +L+
Sbjct: 416 AVAPREIHFVDNLPKTRSGKIMRRLLK 442
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 2e-29
Identities = 59/154 (38%), Positives = 79/154 (51%), Gaps = 12/154 (7%)
Query: 77 MFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENIST 136
M RG N + + F G W+ SGD DGY + R D+I + GE +
Sbjct: 414 MMRG------IWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGP 467
Query: 137 IEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGE---EIINYCRDRLPH 193
EVES L HP+V EA V+G+PD GE AFV L+ G + E EI + + L
Sbjct: 468 FEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKGLGA 527
Query: 194 YMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226
+ APR + F+D LPKT +GK + VL KA +G
Sbjct: 528 HAAPREIEFKDKLPKTRSGKIMRRVL--KAWELG 559
|
Length = 570 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 3e-29
Identities = 74/218 (33%), Positives = 108/218 (49%), Gaps = 16/218 (7%)
Query: 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKA-RQGVPHLGLDEIDIKDPVTM 63
G L +G+TET PGT P E K + +P + LD + + DP
Sbjct: 337 GLKLKSGWGMTETCSPGT---------GHPPEGPDKPGSIGLMLPGIELDVVSLDDP--- 384
Query: 64 KSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRS 123
+ +GE+ RG V GY + + +AF G F +GD+G DGY L DR
Sbjct: 385 -TKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFFLVDRK 443
Query: 124 KDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVA-NGEE 182
KD+IISGG N+ +E ++ HP V E V+G PD + GE AFVKL+ G + +E
Sbjct: 444 KDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSLDE 503
Query: 183 IINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLR 219
+ + +L + P V F ++LP+T GK ++ LR
Sbjct: 504 LRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR 541
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 3e-28
Identities = 75/221 (33%), Positives = 112/221 (50%), Gaps = 17/221 (7%)
Query: 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVT 62
LG L +G+ E G V + D + I QG P DE+ + D
Sbjct: 328 VLGCQLQQVFGMAE----GLVNYTRLD------DPPEIIIHTQGRPLSPDDEVRVVDADG 377
Query: 63 MKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIELKD 121
P + +GE++ RG + GY + + AFD G++RSGDL R PDGY+ ++
Sbjct: 378 NPVAPGE---VGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEG 434
Query: 122 RSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGE 181
R KD I GGE I+ EVE++L HP+V +AA+V PD+ GE CAF+ +K+ +
Sbjct: 435 RVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPL-RAA 493
Query: 182 EIINYCRDR-LPHYMAPRTVVF-EDLPKTSTGKTQKYVLRE 220
++ + R+R L + P + F + LP T+ GK K LR
Sbjct: 494 QLRRFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRR 534
|
Length = 542 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 4e-28
Identities = 64/159 (40%), Positives = 89/159 (55%), Gaps = 6/159 (3%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIELKDRSKDIIISGGE 132
GE+ +G VM GYL N KATQ D GW R+GD+ DGY+ + DR K+II G
Sbjct: 402 GELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGF 461
Query: 133 NISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLP 192
I+ ++E+VL SHP +++AAV PD GE P AFV + G + E +INY ++
Sbjct: 462 QIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQEAVINYVAKQVA 521
Query: 193 HYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKAMGSISK 230
Y R VVF + +PK+ GK +LR + K + S
Sbjct: 522 PYKKVRKVVFVQSIPKSPAGK----ILRRELKRSLTNSV 556
|
Length = 560 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 8e-28
Identities = 72/220 (32%), Positives = 107/220 (48%), Gaps = 17/220 (7%)
Query: 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVT 62
G L +G+ E G V + D + I QG P DE+ + D
Sbjct: 321 VFGCQLQQVFGMAE----GLVNYTRLD------DPAEIIFTTQGRPMSPDDEVRVVDDHG 370
Query: 63 MKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIELKD 121
P + G ++ RG GY K + AFD G++ +GDL P+GYI +
Sbjct: 371 NPVAPGET---GMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVG 427
Query: 122 RSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGE 181
R+KD I GGE I+ E+E++L +HP+V +AA+V PD+ GE CAF+ ++D +
Sbjct: 428 RAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPAL-KAA 486
Query: 182 EIINYCRDR-LPHYMAPRTVVF-EDLPKTSTGKTQKYVLR 219
++ + R+R L Y P V F + LP T+ GK K LR
Sbjct: 487 QLRRFLRERGLAEYKLPDRVEFVDSLPLTAVGKVDKKALR 526
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-27
Identities = 58/159 (36%), Positives = 81/159 (50%), Gaps = 10/159 (6%)
Query: 67 PSDAKTIGE----VMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDR 122
P +A GE V+ + GYL +AT + GW+R+ D+ V P G + + R
Sbjct: 338 PDEALPNGEEGELVVAAADATFTGYLNQPQATAEKLQDGWYRTSDVAVVDPSGTVRILGR 397
Query: 123 SKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEE 182
D+IISGGENI EVE VL P V E V+G PD+ WG++ A V ++G + +
Sbjct: 398 VDDMIISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACVVPREGETLSADA 457
Query: 183 IINYCRD-RLPHYMAPRTVVFED-LPKTSTGKTQKYVLR 219
+ +CR L + PR F D LPK + K VLR
Sbjct: 458 LDTFCRASELADFKRPRRYFFLDELPKNAMNK----VLR 492
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 3e-27
Identities = 58/150 (38%), Positives = 87/150 (58%), Gaps = 4/150 (2%)
Query: 73 IGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGE 132
+G + R +T +GY +T+D F G+ SGD+G +G + + R ++I+SGGE
Sbjct: 391 VGTIFVRNDTQFDGYTSG--STKD-FHDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGE 447
Query: 133 NISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLP 192
N+ IEVE L +HP V EAAV+G D+ +G+ AFV LK G A E + + RD L
Sbjct: 448 NVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLKQHVRDNLA 507
Query: 193 HYMAPRTVVFED-LPKTSTGKTQKYVLREK 221
+Y PR +V D LP+ +TGK + L+ +
Sbjct: 508 NYKVPRDIVVLDELPRGATGKILRRELQAR 537
|
Length = 537 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 5e-27
Identities = 53/158 (33%), Positives = 73/158 (46%), Gaps = 33/158 (20%)
Query: 4 LGFTLTHAYGLTETYGPGTVCV---WKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
LG + YGLTET +V + P +P + E+ I D
Sbjct: 376 LGIPILEGYGLTETSAVVSVNPPDRFVLGTVGKP------------LPGI---EVKIADD 420
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIEL 119
GE++ RG VM GY KN +AT +AF GWFR+GDLG DGY+ +
Sbjct: 421 -------------GEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVI 467
Query: 120 KDRSKDIII-SGGENISTIEVESVLFSHPSVLEAAVVG 156
R K++I S G+NI+ +ES L P + + VVG
Sbjct: 468 TGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG 505
|
Length = 613 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 5e-27
Identities = 55/156 (35%), Positives = 80/156 (51%), Gaps = 29/156 (18%)
Query: 4 LGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKA-RQGVPHLGLDEIDIKDPVT 62
LG + YGLTET G TV +P I+ G P G+ E+ I +
Sbjct: 238 LGIPILEGYGLTETSGVATV--NRPG----------DIRIGTVGKPLPGV-EVRIAE--- 281
Query: 63 MKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKD 121
GE++ RG VM GY KN +AT +A D GW +GD+G DG++ + D
Sbjct: 282 ----------DGEILVRGPNVMKGYYKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITD 331
Query: 122 RSKDIII-SGGENISTIEVESVLFSHPSVLEAAVVG 156
R KD+I+ +GG+NI+ +E+ L + P + +A VVG
Sbjct: 332 RKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVG 367
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 6e-27
Identities = 79/228 (34%), Positives = 109/228 (47%), Gaps = 29/228 (12%)
Query: 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMK 64
G TL AYGLTET P C+ N L +E + G I + P T
Sbjct: 354 GLTLVEAYGLTET-SPAA-CI-----NPLTLKE-----------YNG--SIGLPIPSTDA 393
Query: 65 SVPSDAKT------IGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYI 117
+ DA T IGE+ +G VM GY K + T D GW +GD+ G++
Sbjct: 394 CIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFV 453
Query: 118 ELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCV 177
+ DR KD+I+ G N+ E+E V+ P VLE A VG PD+ GE + KD +
Sbjct: 454 YIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPAL 513
Query: 178 ANGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKA 224
E++ + R L Y PR + F ++LPKT+ GK + LR+ AKA
Sbjct: 514 -TAEDVKAHARANLTGYKQPRIIEFRKELPKTNVGKILRRELRDAAKA 560
|
Length = 560 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-26
Identities = 64/186 (34%), Positives = 87/186 (46%), Gaps = 10/186 (5%)
Query: 46 GVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF-DGGWFR 104
G P + +DP +P GE+ R ++M GYL N AT A D G+FR
Sbjct: 352 GRPASPEARVRARDPQDGALLPDGE--SGEIEIRAPSLMRGYLDNPDATARALTDDGYFR 409
Query: 105 SGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGE 164
+GDLG DG + R D + GG ++ E+E L + P V A VVG G+
Sbjct: 410 TGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGA--TRDGK 467
Query: 165 T-PCAFVKLKDGCVANGEEIINYCRDRLPHYMAP-RTVVFEDLPKTSTG---KTQKYVLR 219
T P AFV DG + ++ CR+ L + P R V E P T + K QK+ LR
Sbjct: 468 TVPVAFVIPTDGASPDEAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLR 527
Query: 220 EKAKAM 225
E A+A
Sbjct: 528 EMAQAR 533
|
Length = 540 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-26
Identities = 58/151 (38%), Positives = 78/151 (51%), Gaps = 6/151 (3%)
Query: 72 TIGEVMFRGNTVMNGYLK-NLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISG 130
+G + GY K D G SGD+G DG + + R D+I+SG
Sbjct: 401 VVGRIFVGNGFPFEGYTDGRDKQIID----GLLSSGDVGYFDEDGLLFVDGRDDDMIVSG 456
Query: 131 GENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDR 190
GEN+ EVE +L HP V+EAAV+G D+ +G+ AFV G + + I +Y RD
Sbjct: 457 GENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKDYVRDN 516
Query: 191 LPHYMAPRTVVF-EDLPKTSTGKTQKYVLRE 220
L Y PR VVF ++LP+ TGK K LRE
Sbjct: 517 LARYKVPRDVVFLDELPRNPTGKVLKRELRE 547
|
Length = 549 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 4e-26
Identities = 52/139 (37%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 79 RGNTVMNGYLKNLKATQDAF---DG-GWFRSGDLGVRHPDGYIELKDRSKDIIISGGENI 134
RG V GY K+ + T F DG + GD DG I L R I +GGE +
Sbjct: 220 RGGRVPLGYYKDPEKTAKTFREIDGVRYAVPGDFARVEADGTITLLGRGSVCINTGGEKV 279
Query: 135 STIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHY 194
EVE L +HP V +A VVG PD+ WG+ A V+L+ G + E+ ++CR L Y
Sbjct: 280 FPEEVEEALKAHPDVADALVVGVPDERWGQRVVAVVQLRAGAGLDLAELRDHCRQHLAGY 339
Query: 195 MAPRTVVFED-LPKTSTGK 212
PR +V D +P+ +GK
Sbjct: 340 KLPRAIVVVDTVPRAPSGK 358
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 5e-26
Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 5/157 (3%)
Query: 73 IGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGE 132
IG V + GY+ ++ GW D+G +G+I + R K++I+ GG
Sbjct: 333 IGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGI 392
Query: 133 NISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLP 192
NI E+ESVL HP+V E V+G PD +WGE P A +K A +++ ++C RL
Sbjct: 393 NIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGS----ATKQQLKSFCLQRLS 448
Query: 193 HYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSI 228
+ P+ F D +P T++GK + + + I
Sbjct: 449 SFKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQEKI 485
|
Length = 487 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 6e-26
Identities = 62/174 (35%), Positives = 92/174 (52%), Gaps = 4/174 (2%)
Query: 54 EIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRH 112
E+ I DP T S+P + GE+ RG +M GYL + +AT + D GW +GD+G
Sbjct: 366 ELKIVDPETGASLPRNQP--GEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYID 423
Query: 113 PDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKL 172
D + + DR K++I G ++ E+E++L SHPS+ +AAVV D+ GE P AFV
Sbjct: 424 DDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVR 483
Query: 173 KDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225
+G +EI + ++ Y V F D +PK +GK + LR K A
Sbjct: 484 SNGSEITEDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLAAG 537
|
Length = 537 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-25
Identities = 52/127 (40%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 101 GWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160
G++ +GD R DGY + R D+I G + T EVES L SHP+V EAAVVG+PD+
Sbjct: 463 GYYFTGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDE 522
Query: 161 HWGETPCAFVKLKDGCVANGE---EIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKY 216
GE AFV LKDG + E E+ + R + P ++F LPKT +GK +
Sbjct: 523 VKGEAIYAFVTLKDGVEPSDELRKELKKHVRKEIGPIATPDEIIFVPGLPKTRSGKIMRR 582
Query: 217 VLREKAK 223
+LR+ A
Sbjct: 583 ILRKIAA 589
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-25
Identities = 65/157 (41%), Positives = 87/157 (55%), Gaps = 7/157 (4%)
Query: 70 AKTIGEVMFRGNTVMNGYLKNLKATQDAFDGG---WFRSGDLGVRHPDGYIELKDRSKDI 126
A IG V F + + YL + + T A W GDLG DGY+ L DR +
Sbjct: 345 AGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFM 404
Query: 127 IISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGE---EI 183
IISGG NI E E+ L HP+V + AV+G PD GE A ++L +G + E E+
Sbjct: 405 IISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELAREL 464
Query: 184 INYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLR 219
I+Y R R+ HY APR+V F ++LP+T TGK K +LR
Sbjct: 465 IDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501
|
Length = 501 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 6e-25
Identities = 67/230 (29%), Positives = 101/230 (43%), Gaps = 21/230 (9%)
Query: 11 AYGLTETYGPGT-VCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP--VTMKSVP 67
AYG+TE T + + P S + Q + + H K V +K
Sbjct: 320 AYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGL 379
Query: 68 SDAKTIGEVMFRGNTVMNGYLKNLKAT-QDAFDGGWFRSGDLGVRHPDGYIELKDRSKDI 126
++ +G ++ RG VM GY T + GW +GD+G G + L RS D
Sbjct: 380 DESSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDR 439
Query: 127 IISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDG----------- 175
I +GGEN+ EVE+VL HP V VVG PD E A V+L+DG
Sbjct: 440 IKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENA 499
Query: 176 ---CVANGEEIINYCRDR-LPHYMAPRTVVF--EDLPKTSTGKTQKYVLR 219
+ E + ++CR++ L + P+ V + P T+TGK ++ +R
Sbjct: 500 KKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVR 549
|
Length = 563 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-24
Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 5/139 (3%)
Query: 79 RGNTVMNGYLKNLKATQDAF---DG-GWFRSGDLGVRHPDGYIELKDRSKDIIISGGENI 134
R + GY K+ + T + F DG + GD DG I L R I +GGE +
Sbjct: 382 RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKV 441
Query: 135 STIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHY 194
EVE L +HP V +A VVG PD+ WG+ A V+L++G + E+ +CR L Y
Sbjct: 442 FPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLAELRAHCRSSLAGY 501
Query: 195 MAPRTVVFED-LPKTSTGK 212
PR + F D + ++ GK
Sbjct: 502 KVPRAIWFVDEVQRSPAGK 520
|
Length = 533 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 2e-24
Identities = 66/212 (31%), Positives = 87/212 (41%), Gaps = 26/212 (12%)
Query: 12 YGLTETYGPGTVCV----WKPDWNSLPREEQAKI-KARQGVPHLGLDEIDIKDPVTMKSV 66
YG TE TV V P+ L R E I + G+ L LDE
Sbjct: 247 YGPTEA----TVAVTAYEVTPE--PLSRNEPLPIGYPKPGLRALILDE---------DGR 291
Query: 67 PSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD----GGWFRSGDLGVRHPDGYIELKDR 122
P GE++ G V GYL N + T AF W+R+GDL DG + R
Sbjct: 292 PVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLLVYLGR 351
Query: 123 SKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEE 182
I G I E+E+ L + P V EA V+ P AFV K+G + +
Sbjct: 352 KDFQIKLHGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVAFVVGKEG-ALDTKA 410
Query: 183 IINYCRDRLPHYMAPRTVVF-EDLPKTSTGKT 213
+ + RLP YM PR V+ + LP + GK
Sbjct: 411 LKKELKKRLPPYMIPRRFVYLDSLPLNANGKI 442
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 3e-24
Identities = 72/231 (31%), Positives = 106/231 (45%), Gaps = 28/231 (12%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIK-ARQGVPHLGLDEIDIKDP 60
E+ G L +G TET T+ + W + K G P G D IDI DP
Sbjct: 323 EKTGIKLMEGFGQTET----TLTIATFPW--------MEPKPGSMGKPSPGYD-IDIIDP 369
Query: 61 VTMKSVPSDAKTIGEVMFRGNT-----VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDG 115
+ GE++ R + + GY ++ + T + + G++ +GD DG
Sbjct: 370 ---DGKSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGYYHTGDTAWMDEDG 426
Query: 116 YIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDG 175
Y+ R+ D+I S G I EVES L HP+VLE AV G PD G+ A + L G
Sbjct: 427 YLWFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECAVTGVPDPIRGQVVKATIVLTKG 486
Query: 176 CVANGEEIINYCRDRLPH----YMAPRTVVF-EDLPKTSTGKTQKYVLREK 221
EE+ +D + Y PR + F ++LPKT +GK ++ +REK
Sbjct: 487 YEP-SEELKKELQDHVKKVTAPYKYPRIIEFVDELPKTISGKIRRVEIREK 536
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 4e-24
Identities = 52/127 (40%), Positives = 70/127 (55%), Gaps = 4/127 (3%)
Query: 101 GWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160
G++ +GD R DGYI + R D+I G + T E+ES L SHP+V EAAVVG PDD
Sbjct: 475 GYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDD 534
Query: 161 HWGETPCAFVKLKDGCVANGE---EIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKY 216
G+ AFV LKDG + E E+ + R + P + F LPKT +GK +
Sbjct: 535 IKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRR 594
Query: 217 VLREKAK 223
+LR+ A
Sbjct: 595 LLRKIAA 601
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 4e-23
Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 26/230 (11%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKD-- 59
ELG L +G+ E G V + D + +I QG P DE+ + D
Sbjct: 322 AELGCQLQQVFGMAE----GLVNYTRLD------DSDERIFTTQGRPMSPDDEVWVADAD 371
Query: 60 --PVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGY 116
P+ +G +M RG GY K+ + AFD G++ SGDL PDGY
Sbjct: 372 GNPLP-------QGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGY 424
Query: 117 IELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGC 176
I + R KD I GGE I+ E+E++L HP+V+ AA+V D+ GE CAF+ +K+
Sbjct: 425 ITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPL 484
Query: 177 VANGEEIINYCRDR-LPHYMAP-RTVVFEDLPKTSTGKTQKYVLREKAKA 224
A ++ + R++ + + P R + LP T+ GK K LR+ +
Sbjct: 485 KA--VQLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 532
|
Length = 536 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 9e-23
Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 6/160 (3%)
Query: 67 PSDAKTIGE-VMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKD 125
+A IGE V G GY N +AT + G + SGDL R DG+I R+ D
Sbjct: 347 ADEA--IGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDADGWIYFAGRTAD 404
Query: 126 IIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIIN 185
+ GEN+S +E +L HP++ AV PD+ G+ A + L+DG + +
Sbjct: 405 WMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPDAFAA 464
Query: 186 Y--CRDRLPHYMAPRTV-VFEDLPKTSTGKTQKYVLREKA 222
+ + L PR V + DLP T+T K K L +
Sbjct: 465 FLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQG 504
|
Length = 540 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 2e-22
Identities = 52/130 (40%), Positives = 71/130 (54%), Gaps = 5/130 (3%)
Query: 98 FDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGR 157
F G +F +GD R DGY + R D++ G + T E+ES L +HP V EAAVVGR
Sbjct: 481 FKGMYF-TGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGR 539
Query: 158 PDDHWGETPCAFVKLKDGCVANGE---EIINYCRDRLPHYMAPRTVVFED-LPKTSTGKT 213
PDD G+ AFV LK G + E E+ N+ R + P + F LPKT +GK
Sbjct: 540 PDDIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKI 599
Query: 214 QKYVLREKAK 223
+ +LR+ A+
Sbjct: 600 MRRILRKIAE 609
|
Length = 637 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 3e-22
Identities = 69/233 (29%), Positives = 93/233 (39%), Gaps = 56/233 (24%)
Query: 7 TLTHAYGLTETYGPGTVCV--WKPDWNSLPREEQAKIKARQGVPHLG----------LDE 54
L +AYG TET TV V + D + G +G LDE
Sbjct: 236 RLVNAYGPTET----TVDVTYHEVDPD----------DLDGGSVPIGRPIANTRVYVLDE 281
Query: 55 IDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF-------DGG-WFRSG 106
++ VP GE+ G V GYL + T + F G +R+G
Sbjct: 282 -------DLRPVPVGV--PGELYIGGAGVARGYLNRPELTAERFVPDPFGGPGERLYRTG 332
Query: 107 DLGVRHPDGYIELKDRSKD-IIISG-----GENISTIEVESVLFSHPSVLEAAVVGRPDD 160
DL PDG +E R+ D + I G GE +E+ L +HP V EA VV R D
Sbjct: 333 DLARWLPDGNLEFLGRADDQVKIRGYRIELGE------IEAALLAHPGVREAVVVAREDG 386
Query: 161 HWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGK 212
+ A+V G + E+ + +RLP YM P V + LP T GK
Sbjct: 387 AGEKRLVAYVVPAAGAELDAAELRAFLAERLPDYMVPSAFVVLDALPLTPNGK 439
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 1e-21
Identities = 47/145 (32%), Positives = 62/145 (42%), Gaps = 8/145 (5%)
Query: 86 GYLKNLKAT----QDAF--DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEV 139
GY + +D F +F +GDL R GY DR D GEN+ST EV
Sbjct: 297 GYTDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEV 356
Query: 140 ESVLFSHPSVLEAAVVGRPD-DHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPR 198
E VL HP V EA V G G A + L G + + + ++LP Y P
Sbjct: 357 EEVLAKHPGVEEANVYGVEVPGTEGRAGMAALTLAPGAAFDPQAFAAHLDEQLPAYARPL 416
Query: 199 TV-VFEDLPKTSTGKTQKYVLREKA 222
+ V + T T K QK LR++
Sbjct: 417 FLRVQAAMETTGTFKYQKTDLRKEG 441
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 1e-21
Identities = 68/229 (29%), Positives = 96/229 (41%), Gaps = 43/229 (18%)
Query: 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLG----------L 52
G L + YG TET T+ W++ A++ A G +G L
Sbjct: 228 STGAELWNMYGPTET----TI------WSTC-----ARVTAADGPVTIGRPIANTQVYVL 272
Query: 53 DEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKAT-----QDAFDGG---WFR 104
DE ++ VP GE+ G+ V GYL + T D FD +R
Sbjct: 273 DE-------DLQPVP--PGVPGELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGRLYR 323
Query: 105 SGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGE 164
+GDL PDG +E R+ D + G I E+E+ L +HP V +A VV R + +
Sbjct: 324 TGDLVRWRPDGRLEYLGRADDQVKIRGFRIELGEIEAALRAHPGVADAVVVVREEGPGDQ 383
Query: 165 TPCAFVKLKDGCVANGEEIINYCRDRLPHYMAP-RTVVFEDLPKTSTGK 212
A+V K G + E + R LP YM P V ++LP T GK
Sbjct: 384 RLVAYVVPKAGAAPDAEALRAALRATLPAYMVPAAFVQLDELPLTPNGK 432
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 2e-21
Identities = 48/146 (32%), Positives = 65/146 (44%), Gaps = 9/146 (6%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAF----DGG-WFRSGDLGVRHPDGYIELKDRSKDIII 128
GE+ G V GY + + T + F G +R+GDLG PDG IE R D +
Sbjct: 327 GELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGR-ADHQV 385
Query: 129 S-GGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYC 187
G + E+E+ L HP V A VV D + AFV +DG + +
Sbjct: 386 KIRGYRVELGEIEAALARHPGVQRAVVVVVGDGG-AKALAAFVVAEDGAAVDAAVLRAAL 444
Query: 188 RDRLPHYMAPRTVVF-EDLPKTSTGK 212
+ LP YM P V + LP T+ GK
Sbjct: 445 AELLPAYMVPSRFVVLDALPLTANGK 470
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 2e-21
Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 85 NGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLF 144
+ Y+ N + T G ++ +GD G+ DGY R+ D+I S G I EVES L
Sbjct: 386 SCYVDNPEKTAATIRGDFYITGDRGIMDEDGYFWFVGRADDVINSSGYRIGPFEVESALI 445
Query: 145 SHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGE-----EIINYCRDRLPHYMAPRT 199
HP+V+E+AVV PD GE AFV L +++ E+ + + Y PR
Sbjct: 446 EHPAVVESAVVSSPDPIRGEVVKAFVVLAPQFLSHDPEQLTKELQEHVKSVTAPYKYPRK 505
Query: 200 VVF-EDLPKTSTGKTQKYVLREK 221
V F ++LPKT TGK ++ LR+K
Sbjct: 506 VEFVQELPKTITGKIKRNELRDK 528
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 2e-21
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 100 GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPD 159
GG+ SGD+G DGY+ L DR +D++ISGG NI E+E+VL + P V + AV G PD
Sbjct: 378 GGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPD 437
Query: 160 DHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFE-DLPKTSTGKTQKYVL 218
+GE A V+ + G + +I + RL Y P+ + +LP+ +GK K L
Sbjct: 438 AEFGEALMAVVEPQPGATLDEADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRL 497
Query: 219 RE 220
R+
Sbjct: 498 RD 499
|
Length = 509 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 3e-21
Identities = 47/124 (37%), Positives = 68/124 (54%), Gaps = 5/124 (4%)
Query: 101 GWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160
G++ +GD G + DGY+ + R+ D+I G +ST E+E + HP V E AVVG D+
Sbjct: 461 GYYDTGDSGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVGVRDE 520
Query: 161 HWGETPCAFVKLKDGCVANGE----EIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQK 215
G+ P V LKD C + + EI+ R+++ A R VVF LPKT +GK +
Sbjct: 521 LKGQVPLGLVVLKDDCKIDADQLENEIVALVREQIGPVAAFRNVVFVKRLPKTRSGKILR 580
Query: 216 YVLR 219
LR
Sbjct: 581 RTLR 584
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 5e-21
Identities = 52/184 (28%), Positives = 74/184 (40%), Gaps = 14/184 (7%)
Query: 53 DEIDIKDPVTMKSVP----------SDAKTIGE-VMFRGNTVMNGYLKNLKATQDAFDGG 101
+ I DP T P + + IGE V G GY + +A + GG
Sbjct: 322 PGVAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGG 381
Query: 102 WFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161
+ SGDL R DGY R D + GEN+ T +E +L +P E AV PD
Sbjct: 382 VYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPV 441
Query: 162 WGETPCAFVKLKDGCVANGEEIINY--CRDRLPHYMAPRTV-VFEDLPKTSTGKTQKYVL 218
G+ A + L G + + + + L P V V +LP+T+T K K L
Sbjct: 442 VGDQVMAALVLAPGAKFDPDAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQL 501
Query: 219 REKA 222
+
Sbjct: 502 SAEG 505
|
Length = 529 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 5e-21
Identities = 63/186 (33%), Positives = 86/186 (46%), Gaps = 17/186 (9%)
Query: 53 DEIDIKDPVTMKSVPSDAKTIGEVMFRGN----TVMNGYLKNLKATQ-----DAFDGG-- 101
++ I+DP T V + GE++ R + GYLKN AT+ D F G
Sbjct: 279 TDMPIRDPKTGFCVRAPVGEPGEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDI 338
Query: 102 WFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVG-RPDD 160
W+R+GDL + DG DR D EN+ST EV VL + PSV EA V G +
Sbjct: 339 WYRTGDLLRQDADGRWYFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANVYGVKVPG 398
Query: 161 HWGETPCAFVKLKDGCVANGEEIIN----YCRDRLPHYMAPRTVVF-EDLPKTSTGKTQK 215
+ G CA + L++ E N R RLP Y P + E++ T K QK
Sbjct: 399 YDGRAGCAAITLEESSAVETEFTKNLLAKLARKRLPSYAVPLFLRLTEEVATTGNHKQQK 458
Query: 216 YVLREK 221
VLR++
Sbjct: 459 GVLRKE 464
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 9e-21
Identities = 51/126 (40%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Query: 98 FDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGR 157
F G W GD + DGY + RS D I G+ + E+ESVL SHP+V EAA +G
Sbjct: 333 FPGVWVH-GDWALVDEDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPAVAEAAAIGV 391
Query: 158 PDDHWGETPCAFVKLKDGCVANGE---EIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKT 213
PD GE FV LK G + E+ ++ D L PR V F DLPKT GK
Sbjct: 392 PDPVKGEAIVCFVVLKPGVTPSAALEAELADHVGDALGKPFRPREVHFVSDLPKTRNGKI 451
Query: 214 QKYVLR 219
+ V+R
Sbjct: 452 MRRVIR 457
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 2e-20
Identities = 52/156 (33%), Positives = 74/156 (47%), Gaps = 26/156 (16%)
Query: 12 YGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVP---- 67
YGLTET GT+ S P + G P L +IK + VP
Sbjct: 301 YGLTETCAGGTL--------SDPGDTTTG---HVGPP---LPCCEIK----LVDVPEMGY 342
Query: 68 --SDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIELKDRSK 124
D GE+ RG V GY KN + T +AFD GWF +GD+G PDG +++ DR K
Sbjct: 343 FAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGDIGEWLPDGTLKIIDRKK 402
Query: 125 DII-ISGGENISTIEVESVLFSHPSVLEAAVVGRPD 159
++ +S GE ++ ++E++ S P V + V G
Sbjct: 403 NLFKLSQGEYVALEKLENIYKSSPLVDQICVYGDSL 438
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 4e-20
Identities = 47/135 (34%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 86 GYLKNLKAT-----QDAFDGG--WFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIE 138
GYL + T D F G +R+GDL PDG IE R + G I E
Sbjct: 336 GYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKIRGFRIELGE 395
Query: 139 VESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPR 198
+E L HP V EAAV+ R D + A+V + A E+ + +RLP YM P
Sbjct: 396 IEQALLQHPGVREAAVLVREDAAGDKRLVAYVVARGALDA--AELRAHLAERLPAYMVPA 453
Query: 199 TVVF-EDLPKTSTGK 212
V ++LP T+ GK
Sbjct: 454 AFVVLDELPLTANGK 468
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 5e-20
Identities = 53/167 (31%), Positives = 76/167 (45%), Gaps = 16/167 (9%)
Query: 64 KSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDR 122
+P +G + RG TV +GY +N +A +AF + GWFR+GDLG H DG + + R
Sbjct: 393 ALLPEG--EVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFLH-DGRLTITGR 449
Query: 123 SKDIIISGGENISTIEVESVLFSHPSVLE---AAVVGRPDDHWGETPCAFVKLKDGCVAN 179
KD+II G N E+E+ + P V AA R + F +
Sbjct: 450 EKDMIIINGVNYYNHEIEAAVEQVPGVEPSFTAACAVRDAGSGTDELAVFFVPRYDLDDR 509
Query: 180 GEEIINYCRDRL-------PHYMAPRTVVFEDLPKTSTGKTQKYVLR 219
++ R + P Y+ P + ED PKTS GK Q+ LR
Sbjct: 510 LAALLRAIRTHVARKIGIAPAYVIP--LAKEDFPKTSLGKIQRAQLR 554
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 7e-20
Identities = 65/191 (34%), Positives = 89/191 (46%), Gaps = 21/191 (10%)
Query: 46 GVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF------- 98
G P G E+ I DP T + +P +GE+ RG +V GY +AT + F
Sbjct: 358 GRPLPGH-EVRIVDPETRRPLPDG--EVGEIWVRGPSVAAGYWNRPEATAETFGARLATD 414
Query: 99 DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENI--STIEVESVLFSHPSVLEAAVVG 156
+GGW R+GDLG H DG + + R KD+II G N IE +V +HP++ A
Sbjct: 415 EGGWLRTGDLGFLH-DGELYVTGRLKDLIIIRGRNHYPQDIE-ATVERAHPALRPGAAAA 472
Query: 157 RPDDHWGETPCAFV--KLKDGCVANGEEIINYCRDRL--PHYMAPRTVVFED---LPKTS 209
D GE V + G A+ + R + H +AP VV LPKTS
Sbjct: 473 FSVDGDGEERLVVVAEVRRRGLPADLAALAEAIRAAVAREHGVAPADVVLVRPGTLPKTS 532
Query: 210 TGKTQKYVLRE 220
+GK Q+ RE
Sbjct: 533 SGKIQRRACRE 543
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 2e-18
Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 30/203 (14%)
Query: 12 YGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAK 71
YG+TET + KPD + L + Q +PH +I I
Sbjct: 261 YGMTET--ASQIATLKPD-DFL----AGNNSSGQVLPHA---QITIPAN----------- 299
Query: 72 TIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGG 131
G + + ++ GY + +Q G F + DLG GY+ + R+ II+GG
Sbjct: 300 QTGNITIQAQSLALGYYPQILDSQ-----GIFETDDLGYLDAQGYLHILGRNSQKIITGG 354
Query: 132 ENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYC-RDR 190
EN+ EVE+ + + V + V+G PD HWGE A KD ++ E + +D+
Sbjct: 355 ENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSIS--LEELKTAIKDQ 412
Query: 191 LPHYMAPRT-VVFEDLPKTSTGK 212
L + P+ + LP+ GK
Sbjct: 413 LSPFKQPKHWIPVPQLPRNPQGK 435
|
Length = 452 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 3e-18
Identities = 45/155 (29%), Positives = 67/155 (43%), Gaps = 17/155 (10%)
Query: 73 IGEVMFRGNTVMNGYLKNLKATQDAF------DGG--------WFRSGDLGVRHPDGYIE 118
GE++ RG V GY + + T + F G W SGD R +G++
Sbjct: 356 EGELVHRGALVAMGYWNDPEKTAERFRPLPPFPGELHLPELAVW--SGDTVRRDEEGFLY 413
Query: 119 LKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVA 178
R ++I + G +S EVE V ++ V EA G PD G+ V G
Sbjct: 414 FVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEEL 473
Query: 179 NGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGK 212
+ ++ CR RLP+YM P + LP+ + GK
Sbjct: 474 DRAALLAECRARLPNYMVPALIHVRQALPRNANGK 508
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 81.6 bits (201), Expect = 7e-18
Identities = 68/235 (28%), Positives = 99/235 (42%), Gaps = 32/235 (13%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLG----LDEID 56
+E G YGL+ET G +C+ D S+ + E + G P+ G L D
Sbjct: 306 IEATGVRTAQVYGLSET-GCTALCL-PTDDGSIVKIEAGAV----GRPYPGVDVYLAATD 359
Query: 57 IKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGY 116
P + PS + G + + M GY N + T + GW +GDL R DG+
Sbjct: 360 GIGPTAPGAGPS--ASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERREDGF 417
Query: 117 IELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGC 176
+K RS ++II GG NI+ EV+ + V EAA PD+ +G A V L
Sbjct: 418 FYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFG----ALVGL---A 470
Query: 177 VANGEEIINYCRDRLPHYMAPR-------------TVVFEDLPKTSTGKTQKYVL 218
V E+ L H +A R V+ D+P+T +GK + L
Sbjct: 471 VVASAELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASL 525
|
Length = 540 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 81.6 bits (201), Expect = 7e-18
Identities = 43/122 (35%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
Query: 101 GWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160
G +GD+G G + + R D+IISGGEN+ VE+ L +HP+V + AV+G PD+
Sbjct: 396 GMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDE 455
Query: 161 HWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTV-VFEDLPKTSTGKTQKYVLR 219
+G AFV L G + ++ +Y +DR+ + PR + + +P+ TGK VLR
Sbjct: 456 RFGHRLAAFVVLHPGSGVDAAQLRDYLKDRVSRFEQPRDINIVSSIPRNPTGK----VLR 511
Query: 220 EK 221
++
Sbjct: 512 KE 513
|
Length = 516 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 8e-17
Identities = 56/177 (31%), Positives = 79/177 (44%), Gaps = 18/177 (10%)
Query: 59 DPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF-------DGGW---FRSGDL 108
DP VP A +GE+ G V GYL + T + F + +R+GDL
Sbjct: 273 DPDLEPLVPIGA--VGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDL 330
Query: 109 GVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCA 168
DG +E R D + G+ I E+E+VL + P V+ AAVV DD G+ A
Sbjct: 331 VRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEAVLRALPGVVVAAVVLLLDDPGGKQLVA 390
Query: 169 FVKLKDGCVAN-----GEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLR 219
F+ + + + R+RLP YM P V D LP T++GK + LR
Sbjct: 391 FLAVDGAAGGEPADVDIALLRSALRERLPSYMVPSVYVPLDELPLTASGKVDRKALR 447
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 7e-16
Identities = 52/166 (31%), Positives = 70/166 (42%), Gaps = 12/166 (7%)
Query: 63 MKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF-------DGG--WFRSGDLGVRHP 113
++ VP GE+ G V GYL + T + F G +R+GDL R
Sbjct: 286 LQPVP--VGVPGELYIGGAGVARGYLGRPELTAERFLPNPFAGSPGERLYRTGDLVRRRA 343
Query: 114 DGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLK 173
DG +E R D + G I E+E+ L S P V EA VV D A++
Sbjct: 344 DGQLEYLGRIDDQVKVRGFRIELGEIEAALRSIPGVAEAVVVAIGDAAGDRQLVAYIVAD 403
Query: 174 DGCVANGEEIINYCRDRLPHYMAP-RTVVFEDLPKTSTGKTQKYVL 218
G + E++ RLP YM P R V + LP T GK + L
Sbjct: 404 PGAAIDIEDLRARLATRLPAYMVPSRFVRLDALPLTPNGKIDRKAL 449
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 8e-16
Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 38/163 (23%)
Query: 8 LTHAYGLTETYGPGTVCVWKPD-------------WNSLPREEQAKIKARQGVPHLGLDE 54
+ YGLTET GP T+ PD +N L EE VP +G D
Sbjct: 411 VVQGYGLTETLGPTTLGF--PDEMCMLGTVGAPAVYNELRLEE---------VPEMGYD- 458
Query: 55 IDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPD 114
P GE+ RG + +GY KN + T++ GWF +GD+G P+
Sbjct: 459 ------------PLGEPPRGEICVRGKCLFSGYYKNPELTEEVMKDGWFHTGDIGEILPN 506
Query: 115 GYIELKDRSKDII-ISGGENISTIEVESVLFSHPSVLEAAVVG 156
G +++ DR K++I +S GE ++ +E+V +P V + V G
Sbjct: 507 GVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYG 549
|
Length = 660 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-15
Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 39/187 (20%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKI----KARQGVPHLGLDEIDI 57
+LG + YG+TE + +++L +I K GV E+ I
Sbjct: 296 RKLGLPICEGYGMTENFA----------YSTLNYPGDRRIGTVGKPIPGV------ELKI 339
Query: 58 KDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGY 116
+ GE++ R +M+GY K+ + T +AF + GW +GD G DG+
Sbjct: 340 SE-------------DGEILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGF 386
Query: 117 IELKDRSKDII-ISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDG 175
+++ R K++ S G+ ++ +E++L ++P V + VVG P A V L +
Sbjct: 387 LKITGRVKELFKTSKGKYVAPAPIENLLSANPHVEQVCVVGSGLPQ----PVALVVLSEA 442
Query: 176 CVANGEE 182
E
Sbjct: 443 ADPLERE 449
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-15
Identities = 57/192 (29%), Positives = 82/192 (42%), Gaps = 39/192 (20%)
Query: 11 AYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDA 70
YG++ET GP TV P L + + +P K DA
Sbjct: 348 LYGMSETSGPHTVSN--PQNYRL-------LSCGKALPG-----------CETKIHNPDA 387
Query: 71 KTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSKDIII- 128
IGE+ G V GYL + T++A D GW SGDLG DG++ + R K++II
Sbjct: 388 DGIGEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIIT 447
Query: 129 SGGENISTIEVE-SVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGE------ 181
+GGEN+ + +E +V P + A +VG D + + LK C + E
Sbjct: 448 AGGENVPPVPIEEAVKKELPIISNAMLVG---DK-RKFLSMLLTLK--CEVDPETGEPLD 501
Query: 182 ----EIINYCRD 189
E I +CR
Sbjct: 502 NLTEEAIEFCRL 513
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 4e-15
Identities = 65/233 (27%), Positives = 91/233 (39%), Gaps = 37/233 (15%)
Query: 12 YGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQ--------GVPHLGLDEIDIKDPVTM 63
YG TET +V +LP A RQ G+P G+ + I DP T
Sbjct: 930 YGATETSPVASV--------NLPDVLAADF-KRQTGSKEGSVGMPLPGV-AVRIVDPETF 979
Query: 64 KSVPSDAKTIGEVMFRGNTVMNGYLKNLKAT----QDAFDGGWFRSGDLGVRHPDGYIEL 119
+ +P G ++ G VM GYL + + T +D GW+ +GD G DG++ +
Sbjct: 980 EELP--PGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTI 1037
Query: 120 KDR----SKDIIISGGENISTIEVESVL--FSHPSVLEAAVVGRPDDHWGETPCAFVKLK 173
DR +K I GGE + VE L + AV PD+ GE
Sbjct: 1038 TDRYSRFAK-I---GGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCG 1093
Query: 174 DGCVANGEEIINYCRDRLPHYMAPRTVV-FEDLPKTSTGKTQKYVLREKAKAM 225
V + I LP+ P E LP +GK L+E A A+
Sbjct: 1094 AEDVEELKRAIKES--GLPNLWKPSRYFKVEALPLLGSGKLDLKGLKELALAL 1144
|
Length = 1146 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 7e-15
Identities = 51/127 (40%), Positives = 68/127 (53%), Gaps = 6/127 (4%)
Query: 101 GWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160
G++ SGD R DGY L R D+I G I T EVES L SHP EAAVVG +
Sbjct: 513 GYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHE 572
Query: 161 HWGETPCAFVKLKDGCVANGEE----IINYCRDRLPHYMAPRTVVFE-DLPKTSTGKTQK 215
G+ AFV L +G V EE +I R+++ + AP + + LPKT +GK +
Sbjct: 573 VKGQGIYAFVTLVEG-VPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMR 631
Query: 216 YVLREKA 222
+LR+ A
Sbjct: 632 RILRKIA 638
|
Length = 666 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 9e-15
Identities = 61/213 (28%), Positives = 90/213 (42%), Gaps = 41/213 (19%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPV 61
G + YG++ET G CV+ GVP G+ + ++D
Sbjct: 172 AAAGINVVRTYGMSETSGG---CVY------------------DGVPLDGV-RVRVED-- 207
Query: 62 TMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELK 120
G + G T+ GY +N D F + GWFR+ DLG DG + +
Sbjct: 208 ------------GRIALGGPTLAKGY-RNP-VDPDPFAEPGWFRTDDLGALD-DGVLTVL 252
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
R+ D I +GG + VE+ L +HP+V + AV G PDD G+ A V G
Sbjct: 253 GRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTL 312
Query: 181 EEIINYCRDRLPHYMAPRTV-VFEDLPKTSTGK 212
E + + L APR + V ++LP+ GK
Sbjct: 313 EALRAHVARTLDRTAAPRELHVVDELPRRGIGK 345
|
Length = 358 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-14
Identities = 56/200 (28%), Positives = 80/200 (40%), Gaps = 39/200 (19%)
Query: 12 YGLTETYGPGTVCVWKPDWNSLPREEQAK-IKARQGVPH-LGLDEIDIKDPVTMKSVPSD 69
YGLTE TVC AK GV L E+ + D
Sbjct: 271 YGLTEM--ASTVC--------------AKRADGLAGVGSPLPGREVKLVD---------- 304
Query: 70 AKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIIS 129
GE+ RG ++ GY + + D GWF + D G +G + + R ++ S
Sbjct: 305 ----GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLFFS 359
Query: 130 GGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGC-VANGEEIINYCR 188
GGE I E+E V+ HP V + VV D +G+ P A V+ V N E + +
Sbjct: 360 GGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEAAVVNLAE---WLQ 416
Query: 189 DRLPHYMAPRTVVFEDLPKT 208
D+L + P V + LP
Sbjct: 417 DKLARFQQP--VAYYLLPPE 434
|
Length = 458 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-14
Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 54 EIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKAT--QDAFDGGWFRSGDLGVR 111
E+ I P T + +P G ++ RG VM+GYL N + T + GW+ +GD+G
Sbjct: 321 EVRIVSPETHEELPIGEG--GLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIGKI 378
Query: 112 HPDGYIELKDRSKDIIISGGENISTIEVESVLFSH-PSVLEAAVVGRPDDHWGETPCAFV 170
DG++ + R K GGE +S VE +L P A V PD+ GE
Sbjct: 379 DEDGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSLHAAVEVPDEKKGEKIVLLT 438
Query: 171 KLKDGCVANGEEIINYCRDR-LPHYMAPRTVVF-EDLPKTSTGKT 213
+D + EE+ R+ LP+ PR ++ +++P +GKT
Sbjct: 439 TTED---LDPEELNAILREAGLPNLAVPRKILHVDEIPLLGSGKT 480
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 3e-14
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 15/162 (9%)
Query: 69 DAKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIELKDRSKDII 127
+TIG + +G+ V +GY N +AT+ + GW ++GDLG +G + + R+KDII
Sbjct: 336 PDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGFLR-NGRLVITGRAKDII 394
Query: 128 ISGGENISTIEVESVLFSHPSVL--EAAVVGRPDDHWG-ETPCAFVKLK---DGCVANGE 181
I G+N ++E V + A G D+ E FV+ + D
Sbjct: 395 IVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIFVEYRQSLDDFTPLAL 454
Query: 182 EI---INYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLRE 220
+I +N ++ P + PKT++GK Q+Y L +
Sbjct: 455 KIKRHVNKKMGLNIDHVIPVRSI----PKTTSGKIQRYKLAQ 492
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 9e-14
Identities = 44/132 (33%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 96 DAFDGG--WFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAA 153
D F G WF +GDL G+ + DR D GEN++T EVE+ L P V EA
Sbjct: 432 DVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAV 491
Query: 154 VVGRP-DDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVF----EDLPKT 208
V G G A + L DG + + + +RLP Y P +F +L T
Sbjct: 492 VYGVEVPGTDGRAGMAAIVLADGAEFDLAALAAHLYERLPAYAVP---LFVRLVPELETT 548
Query: 209 STGKTQKYVLRE 220
T K +K LR+
Sbjct: 549 GTFKYRKVDLRK 560
|
Length = 600 |
| >gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 4e-13
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 16/132 (12%)
Query: 104 RSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWG 163
+ DLG + G + R D+I G N+ IEVE V+ P V EA V D G
Sbjct: 294 FTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAG 353
Query: 164 ETPCAFVKLKDGCVANGE----EIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVL 218
E A V +++ E ++ +C L Y P + ++PK + GK +
Sbjct: 354 ERVKAKV------ISHEEIDPVQLREWCIQHLAPYQVPHEIESVTEIPKNANGKVSR--- 404
Query: 219 REKAKAMGSISK 230
K +G ++
Sbjct: 405 --KLLELGEVTA 414
|
Length = 414 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 4e-13
Identities = 62/219 (28%), Positives = 89/219 (40%), Gaps = 22/219 (10%)
Query: 13 GLTETYGPG----TVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPS 68
GLT YGP TV +WK +++ A I + V + +D + VP
Sbjct: 3379 GLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIG--RPVAGRSIYVLD----GQLNPVP- 3431
Query: 69 DAKTIGEVMFRGNTVMNGYLKNLKATQDAF--------DGGWFRSGDLGVRHPDGYIELK 120
GE+ G + GY + T + F G +R+GDL DG IE
Sbjct: 3432 -VGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYL 3490
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
R + G I E+E+ L HPSV EA V+ R D G+ A+V D
Sbjct: 3491 GRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLAR-DGAGGKQLVAYVVPADPQGDWR 3549
Query: 181 EEIINYCRDRLPHYMAP-RTVVFEDLPKTSTGKTQKYVL 218
E + ++ LP YM P + +V +P GK + L
Sbjct: 3550 ETLRDHLAASLPDYMVPAQLLVLAAMPLGPNGKVDRKAL 3588
|
Length = 3956 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 4e-13
Identities = 49/164 (29%), Positives = 73/164 (44%), Gaps = 38/164 (23%)
Query: 7 TLTHAYGLTETYGP------------GTVCVWKPDWNSLPREEQAKIKAR-QGVPHLGLD 53
L+ YGLTE+ G GTV V I+AR + VP +G D
Sbjct: 410 VLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMT-----------TIEARLESVPEMGYD 458
Query: 54 EIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHP 113
+ VP GE+ RGNT+ +GY K T++ GWF +GD+G P
Sbjct: 459 --------ALSDVPR-----GEICLRGNTLFSGYHKRQDLTEEVLIDGWFHTGDIGEWQP 505
Query: 114 DGYIELKDRSKDII-ISGGENISTIEVESVLFSHPSVLEAAVVG 156
+G +++ DR K+I +S GE ++ +E+ P + V G
Sbjct: 506 NGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYG 549
|
Length = 660 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 5e-13
Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 27/184 (14%)
Query: 54 EIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRH 112
EI+I++ +P + +G + RG ++M+GY ++ + +QD GW +GDLG
Sbjct: 395 EIEIRNE-AGMPLPE--RVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYLL 450
Query: 113 PDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVL--EAAVVGRPDDHWGETPCAFV 170
DGY+ + R+KD+II G NI ++E + P + +AA ++ GE V
Sbjct: 451 -DGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLV 508
Query: 171 KLKDGCVANGEEIINYCRD--RLPHYMA-------PRTVVFEDLPKTSTGKTQKYVLREK 221
+ + ++I+ R + P + LP+TS+GK R K
Sbjct: 509 QCRISDEERRGQLIHALAALVRSEFGVEAAVELVPPHS-----LPRTSSGKLS----RAK 559
Query: 222 AKAM 225
AK
Sbjct: 560 AKKR 563
|
Length = 579 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 6e-13
Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 13/154 (8%)
Query: 81 NTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVE 140
+TV + LK F + S D G+R DGY + R+ D+I G + T E+E
Sbjct: 452 STVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIE 511
Query: 141 SVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKD--------GCVANGEEIINYCRDRLP 192
+ SHPSV E AVVG D+ G+ F LK+ A +++ +L
Sbjct: 512 ESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLG 571
Query: 193 HYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKAM 225
P V F LPKT +GK +LR +A+
Sbjct: 572 AVARPARVYFVAALPKTRSGK----LLRRSIQAL 601
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 6e-13
Identities = 43/122 (35%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 107 DLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETP 166
D G+R DGY + R+ D+I G + T E+E + SHP+V E AVVG D G+
Sbjct: 479 DWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVA 538
Query: 167 CAFVKLKDGCVANGE--------EIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYV 217
AFV KD EI+ +L P V F LPKT +GK +
Sbjct: 539 VAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGK----L 594
Query: 218 LR 219
LR
Sbjct: 595 LR 596
|
Length = 629 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 6e-13
Identities = 65/231 (28%), Positives = 89/231 (38%), Gaps = 38/231 (16%)
Query: 13 GLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSV------ 66
L YGP V W KAR G G + I P+ +S
Sbjct: 4837 YLFNGYGPTETTVTVLLW-----------KARDGDAC-GAAYMPIGTPLGNRSGYVLDGQ 4884
Query: 67 --PSDAKTIGEVMFRGNTVMNGYLKN--LKATQ---DAFD---GGWFRSGDLGVRHPDGY 116
P GE+ G V GYL+ L A + D F G +R+GDL DG
Sbjct: 4885 LNPLPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGV 4944
Query: 117 IELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGC 176
I+ R + G I E+E+ L HP+V EA V+ + G+ +V +D
Sbjct: 4945 IDYLGRVDHQVKIRGFRIELGEIEARLREHPAVREAVVIAQEGAV-GKQLVGYVVPQDPA 5003
Query: 177 VANGEEIINYCRDRL--------PHYMAPRTVVF-EDLPKTSTGKTQKYVL 218
+A+ +E RD L P YM P +VF +P T GK + L
Sbjct: 5004 LADADEAQAELRDELKAALRERLPEYMVPAHLVFLARMPLTPNGKLDRKAL 5054
|
Length = 5163 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 5e-12
Identities = 53/214 (24%), Positives = 77/214 (35%), Gaps = 21/214 (9%)
Query: 14 LTETYGPGTVCVWKPDWN-SLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKT 72
L YGP + W ++ I G P + + P
Sbjct: 3337 LYNLYGPTEATITVTHWQCVEEGKDAVPI----GRPIANRACYILDGSLE----PVPVGA 3388
Query: 73 IGEVMFRGNTVMNGYLKNLKATQDAF-------DGGWFRSGDLGVRHPDGYIELKDRSKD 125
+GE+ G + GY T + F +R+GDL DG IE R
Sbjct: 3389 LGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDH 3448
Query: 126 IIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIIN 185
+ G I E+E+ L HP V EA V+ G A+V +D E +
Sbjct: 3449 QVKIRGFRIELGEIEARLLEHPWVREAVVL----AVDGRQLVAYVVPEDEAGDLREALKA 3504
Query: 186 YCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVL 218
+ + LP YM P ++F E +P T GK + L
Sbjct: 3505 HLKASLPEYMVPAHLLFLERMPLTPNGKLDRKAL 3538
|
Length = 5163 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 7e-12
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 27/157 (17%)
Query: 4 LGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQG--VPHLGLDEIDIKD-- 59
LG + YGLTET T W D S+ R G +P + + ++
Sbjct: 444 LGAPIGQGYGLTETCAGATFSEW--DDTSV---------GRVGPPLPCCYVKLVSWEEGG 492
Query: 60 -PVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF-----DGGWFRSGDLGVRHP 113
++ K +P GE++ G +V GY KN + T + + WF +GD+G HP
Sbjct: 493 YLISDKPMPR-----GEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHP 547
Query: 114 DGYIELKDRSKDII-ISGGENISTIEVESVLFSHPSV 149
DG +E+ DR KDI+ + GE +S +VE+ L P V
Sbjct: 548 DGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYV 584
|
Length = 696 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-11
Identities = 64/230 (27%), Positives = 90/230 (39%), Gaps = 29/230 (12%)
Query: 1 MEELGFT-LTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKD 59
+E L T L + YG TET V W L E + + Q + +L +D
Sbjct: 1855 LERLPDTGLFNLYGPTET--AVDVTHWTCRRKDL--EGRDSVPIGQPIANLSTYILD--- 1907
Query: 60 PVTMKSVPSDAKTIGEVMFRGNTVMNGYLK--NLKATQ---DAF---DGGWFRSGDLGVR 111
++ VP GE+ G + GYL L A + D F +R+GDL
Sbjct: 1908 -ASLNPVP--IGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARY 1964
Query: 112 HPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVK 171
DG IE R + G I E+E+ L V EA V+ + D G+ A+V
Sbjct: 1965 RADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREAVVIAQ-DGANGKQLVAYVV 2023
Query: 172 LKDGCVANGEEIINYCRD--------RLPHYMAPRTVVF-EDLPKTSTGK 212
D + + +E R LP YM P +VF +P T GK
Sbjct: 2024 PTDPGLVDDDEAQVALRAILKNHLKASLPEYMVPAHLVFLARMPLTPNGK 2073
|
Length = 3956 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-11
Identities = 62/232 (26%), Positives = 91/232 (39%), Gaps = 37/232 (15%)
Query: 1 MEELGF---TLTHAYGLTETY------GPGTVCVWKPDWNSLPREEQAKIKARQGVPHLG 51
M GF +YGL E+ PG + D + A+ A G P
Sbjct: 296 MAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGL--RVDEVTTDDGSGARRHAVLGNP--- 350
Query: 52 LDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGV 110
+ ++++ + + IGE+ RG ++M+GYL Q D WF +GDLG
Sbjct: 351 IPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLG-----QAPIDPDDWFPTGDLGY 405
Query: 111 RHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETP---- 166
G + + R+K++I G NI E+E V V E AVV P
Sbjct: 406 LVDGGLV-VCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVI 464
Query: 167 CAFVKLKDGCVANGE---EIINYCRDRLPHYMAPRTVVF---EDLPKTSTGK 212
A + D A E + + C + P VVF LP+TS+GK
Sbjct: 465 AAEFRGPDEAGARSEVVQRVASECG------VVPSDVVFVAPGSLPRTSSGK 510
|
Length = 525 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-11
Identities = 46/144 (31%), Positives = 66/144 (45%), Gaps = 9/144 (6%)
Query: 86 GYLKNLKATQ-----DAFDGG--WFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIE 138
GY + T+ D F G +F +GDL V+ ++ DR+ D GEN++T E
Sbjct: 362 GYAGPRELTEKKLLRDVFKKGDVYFNTGDLLVQDRQNFLYFHDRTGDTFRWKGENVATTE 421
Query: 139 VESVLFSHPSVLEAAVVGRP-DDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAP 197
V +L + E V G H G A V LK G + E++ + R+ LP Y P
Sbjct: 422 VADILTMVDFIQEVNVYGVTVPGHEGRAGMAAVILKPGTEFDLEKLYQHVREFLPAYARP 481
Query: 198 RTVVFED-LPKTSTGKTQKYVLRE 220
R + +D + T T K QK L E
Sbjct: 482 RFLRIQDSMEVTGTFKQQKVRLVE 505
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 1e-10
Identities = 48/155 (30%), Positives = 64/155 (41%), Gaps = 10/155 (6%)
Query: 73 IGEVMFRGNTVMNGYLKNLKATQ-----DAFD---GGWFRSGDLGVRHPDGYIELKDRSK 124
GE+ G + GYL T D F +R+GDL DG +E R
Sbjct: 2345 AGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRID 2404
Query: 125 DIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEII 184
+ G I E+E+ L +HP+V EA VV + D G+ A+V D E+
Sbjct: 2405 HQVKIRGFRIELGEIEARLQAHPAVREAVVVAQ-DGASGKQLVAYVVPDDAAEDLLAELR 2463
Query: 185 NYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVL 218
+ RLP YM P V E LP GK + L
Sbjct: 2464 AWLAARLPAYMVPAHWVVLERLPLNPNGKLDRKAL 2498
|
Length = 5163 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-10
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISG-GE 132
GE++ RG+ M GYL + W+ +GDLG +GY+ + R K++II+ G
Sbjct: 305 GEILVRGSL-MLGYLG-----EPPATDDWWATGDLGHLDEEGYLYINGRKKNLIITSFGR 358
Query: 133 NISTIEVESVLFSHPSVLEAAVVG 156
N+S VES L P++ +A V G
Sbjct: 359 NVSPEWVESELQQAPAIAQAVVFG 382
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-10
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Query: 73 IGEVMFRGNTVMNGYLKNLKATQDA----FDGGWFRSGDLGVRHPDGYIELKDRSKDIII 128
+GE++ G V Y +AT+ A + W R GDLG G + R +
Sbjct: 298 VGEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVE 357
Query: 129 SGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCR 188
+ G + T+ VE V HP V +A+VG + P V+ + + + R
Sbjct: 358 TAGGTLFTVPVEQVFNRHPGVRRSALVGV-GKPGTQAPVLVVEPMPPVLDRRKRLEGRLR 416
Query: 189 DRL 191
Sbjct: 417 ATA 419
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-10
Identities = 62/216 (28%), Positives = 87/216 (40%), Gaps = 24/216 (11%)
Query: 13 GLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVP--HLGLDEIDIKDPVTMKSVPSDA 70
L YGP V + L EE+ G P +LGL +D + VP
Sbjct: 799 RLINHYGPTETTVGVSTY-ELSDEERDFGNVPIGQPLANLGLYILD----HYLNPVPVGV 853
Query: 71 KTIGEVMFRGNTVMNGYLKNLKATQDAF-------DGG-WFRSGDLGVRHPDGYIELKDR 122
+GE+ G + GY + T + F DGG +R+GDL DG IE R
Sbjct: 854 --VGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGR 911
Query: 123 SKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGC-----V 177
+ G I E+E+ L + P V EA V+ +P D G A++
Sbjct: 912 MDHQVKIRGFRIELGEIEARLLAQPGVREAVVLAQPGDA-GLQLVAYLVPAAVADGAEHQ 970
Query: 178 ANGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGK 212
A +E+ R LP YM P ++ + LP T GK
Sbjct: 971 ATRDELKAQLRQVLPDYMVPAHLLLLDSLPLTPNGK 1006
|
Length = 3956 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 7e-10
Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 38/190 (20%)
Query: 54 EIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF---DG-GWFRSGDLG 109
+ I DP +++ + + +GE+ G ++ +GY +N +A+ F DG W R+GDLG
Sbjct: 380 AVLIVDPQSLEVLGDNR--VGEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGDLG 437
Query: 110 VRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAF 169
DG + + R KD++I G N+ ++E + V+ V AF
Sbjct: 438 FLR-DGELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRKGRVA-----------AF 485
Query: 170 VKLKDGCVANG---------------EEIINYCRDRLP--HYMAPRTVVFED---LPKTS 209
G G + +I R + AP V+ + LPKTS
Sbjct: 486 AVNHQGEEGIGIAAEISRSVQKILPPQALIKSIRQAVAEACQEAPSVVLLLNPGALPKTS 545
Query: 210 TGKTQKYVLR 219
+GK Q+ R
Sbjct: 546 SGKLQRSACR 555
|
Length = 4334 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-09
Identities = 45/170 (26%), Positives = 65/170 (38%), Gaps = 22/170 (12%)
Query: 69 DAKTIGEVMFRGNTVMNGYLK--NLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDI 126
+ +G + RG +V GYL QDA GW +GDLG +G + + R KD+
Sbjct: 382 PPRGVGVIELRGESVTPGYLTMDGFIPAQDA--DGWLDTGDLGYLTEEGEVVVCGRVKDV 439
Query: 127 IISGGENISTIEVESVLFSHPSVLE--AAVVGRPDDHWGETPCAFVKLKDGCVANGEEII 184
II G NI ++E V A V H E V+ +
Sbjct: 440 IIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNA---FEDPAEV 496
Query: 185 NYCRDRLPHY------MAPRTVVF---EDLPKTSTGKTQKYVLREKAKAM 225
R ++ H + PR VV +PKT +GK + R A +
Sbjct: 497 RRIRHQVAHEVVAEVGVRPRNVVVLGPGSIPKTPSGKLR----RANAAEL 542
|
Length = 545 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 4e-09
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 23/102 (22%)
Query: 7 TLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSV 66
+T G TET T W P + I G+P G +K V
Sbjct: 322 PMTSGLGATETAPTATFVHW-------PTDRSGVI----GLPAPG---------TELKLV 361
Query: 67 PSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGD 107
P+ K EV +G V GY ++ + T +AFD G++R GD
Sbjct: 362 PNGGKL--EVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGD 401
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 6e-09
Identities = 46/160 (28%), Positives = 63/160 (39%), Gaps = 12/160 (7%)
Query: 67 PSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF------DGG-WFRSGDLGVRHPDGYIEL 119
P +GE+ G + GY T + F G +R+GDL DG IE
Sbjct: 845 PVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEY 904
Query: 120 KDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN 179
R + G I E+E+ L HP V EAAV+ G+ +V L+
Sbjct: 905 AGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVVLESEGGDW 960
Query: 180 GEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVL 218
E + + LP YM P + E LP T GK + L
Sbjct: 961 REALKAHLAASLPEYMVPAQWLALERLPLTPNGKLDRKAL 1000
|
Length = 5163 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 7e-09
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDII-ISGGE 132
GE+ RG T+ +GY K T++ GW +GD+G P+G +++ DR K+I +S GE
Sbjct: 469 GEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGE 528
Query: 133 NISTIEVESVLFSHPSVLEAAVV 155
++ +E++ + +++ V
Sbjct: 529 YVAVENIENI-YGEVQAVDSVWV 550
|
Length = 666 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-08
Identities = 48/165 (29%), Positives = 66/165 (40%), Gaps = 15/165 (9%)
Query: 66 VPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWF--------RSGDLGVRHPDGYI 117
VP A +GE+ G V GY+ + T AF F R+GDL R DG +
Sbjct: 4061 VPLGA--VGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVL 4118
Query: 118 ELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCV 177
E R + G I E+E+ L V EAA V + G+ ++ +
Sbjct: 4119 EYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAA-VAVQEGVNGKHLVGYLVPHQTVL 4177
Query: 178 ANG---EEIINYCRDRLPHYMAP-RTVVFEDLPKTSTGKTQKYVL 218
A G E I R LP YM P + + LP + GK + L
Sbjct: 4178 AQGALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKAL 4222
|
Length = 4334 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-08
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 14/141 (9%)
Query: 86 GYLKNLKATQDAF------DGG-WFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIE 138
GYL T F G +R+GD+ DG +E RS D + G+ I E
Sbjct: 815 GYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGE 874
Query: 139 VESVLFSHPSVLEAAVVGRPDDHWGETP------CAFVKLKDGCVANGEEIINYCRDRLP 192
++ + + P V +A + T ++ + G + + R+RLP
Sbjct: 875 IDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLDTSALQAQLRERLP 934
Query: 193 HYMAPRTVV-FEDLPKTSTGK 212
+M P ++ + LP ++ GK
Sbjct: 935 PHMVPVVLLQLDQLPLSANGK 955
|
Length = 1296 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 4e-08
Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 11/158 (6%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAF---DGGW-FRSGDLGVRHPDGYIELKDRSKDIIIS 129
GE++ G +V GYL N + T +AF +G +R+GD G DG + + R I
Sbjct: 343 GEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTIT-DGQLFYQGRLDFQIKL 401
Query: 130 GGENISTIEVESVLFSHPSVLEAAVVGR-PDDHWGETPCAFVKLKDGCVANGE----EII 184
G I ++E L + A VV + DH E A + + I
Sbjct: 402 HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKAIK 461
Query: 185 NYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREK 221
+ LP YM PR ++ + LP T+ GK + L E+
Sbjct: 462 KELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEE 499
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 4e-08
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 11/174 (6%)
Query: 60 PVTMKSVPSDAKTIG-----EVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPD 114
P ++ V D T G ++ RG + GY + + GW + D D
Sbjct: 321 PYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPVA--NEGWLDTRDRVCIDSD 378
Query: 115 GYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKD 174
G++ + R+ D + GG N+ EVE ++ +V EAAVV + T AF+
Sbjct: 379 GWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATS 438
Query: 175 GCVANGEEIINYCR---DRLPHYMAP-RTVVFEDLPKTSTGKTQKYVLREKAKA 224
G +G + + R +RL + P R V + LP+T GK + LR+++
Sbjct: 439 GATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQSPT 492
|
Length = 705 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 5e-08
Identities = 29/102 (28%), Positives = 39/102 (38%), Gaps = 23/102 (22%)
Query: 7 TLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSV 66
+ G+TET T P I G+P G +K V
Sbjct: 367 RMMTGLGMTETAPSATFTTG-------PLSRAGNI----GLPAPG---------CEVKLV 406
Query: 67 PSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGD 107
P K EV +G V GY + + T +AFD G++RSGD
Sbjct: 407 PVGGKL--EVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGD 446
|
Length = 614 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 8e-08
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 12/128 (9%)
Query: 101 GWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160
G++ SGDLG + +GY + RS D I G + +E+ + HP VLE +G D
Sbjct: 492 GYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDP 551
Query: 161 HWGETPCAFVKLK--------DGCVANGE--EIINYCRDRLPHYMAPRTVVFEDLPKTST 210
P + LK D E II +D + + ++ LPKT T
Sbjct: 552 DCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIIT--QDIESLAVLRKIIIVNQLPKTKT 609
Query: 211 GKTQKYVL 218
GK + ++
Sbjct: 610 GKIPRQII 617
|
Length = 647 |
| >gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 9e-08
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 26/167 (15%)
Query: 75 EVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENI 134
+V F+G V NG K L+ R GD+ R GY R+ D + GG +
Sbjct: 576 KVYFKGMPVFNG--KILR-----------RHGDIFERTSGGYYRAHGRADDTMNLGGIKV 622
Query: 135 STIEVESVLFS-HPSVLEAAVVGRPDDHWG-ETPCAFVKLKDGCVANGEEIINYCRDRL- 191
S++E+E V + SVLE A +G P G E LKD +N +
Sbjct: 623 SSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKD--PPGSNPDLNELKKIFN 680
Query: 192 --------PHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKAMGSISK 230
P + V+ P+T++ K + VLR++ S SK
Sbjct: 681 SAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVLRQQLAQELSRSK 727
|
Length = 728 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 96 DAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVV 155
D F G W R GD P G + + RS + GG I T E+ V+ P V ++ VV
Sbjct: 467 DTFPGVW-RHGDWIKITPHGGVIIYGRSDATLNPGGVRIGTAEIYRVVEKIPEVEDSLVV 525
Query: 156 GRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTV---VFE--DLPKTST 210
G+ D E FVKL++G + + ++ R + ++PR V + D+P T +
Sbjct: 526 GQEVDDGDERMPLFVKLREGVTLD-DALVKRIRSAIRAALSPRHVPAEIIAVPDIPYTLS 584
Query: 211 GK 212
GK
Sbjct: 585 GK 586
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-07
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIELKDRSKDII-ISGG 131
GE+ RG + GY K+ T++ D GW +GD+G+ P G +++ DR K+I ++ G
Sbjct: 459 GEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQG 518
Query: 132 ENISTIEVESVLFSHPSVLEAAVVG 156
E I+ ++E+V V + V G
Sbjct: 519 EYIAPEKIENVYAKCKFVAQCFVYG 543
|
Length = 651 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 6/157 (3%)
Query: 74 GEVMFRGNTVMNGYLKNLK-ATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGE 132
G + RG VM GYL+ + GW+ +GD+ +G+I +K R+K GE
Sbjct: 982 GRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGE 1041
Query: 133 NISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDR-L 191
IS VE + A V PD GE + L A + + +
Sbjct: 1042 MISLAAVEELAAELWPDALHAAVSIPDARKGER---IILLTTASDATRAAFLAHAKAAGA 1098
Query: 192 PHYMAPRTV-VFEDLPKTSTGKTQKYVLREKAKAMGS 227
M P + +++P TGK + + A+ +
Sbjct: 1099 SELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEEAAA 1135
|
Length = 1140 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-07
Identities = 48/153 (31%), Positives = 67/153 (43%), Gaps = 25/153 (16%)
Query: 86 GYLK----NLKATQDAFDGG--WFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEV 139
GY+ N K +D F G F SGD+ V GY+ KDR+ D GEN+ST EV
Sbjct: 328 GYVNEGATNKKIARDVFKKGDSAFLSGDVLVMDELGYLYFKDRTGDTFRWKGENVSTTEV 387
Query: 140 ESVLFSHPSVLEAAVVGRPDDHWG-ETP--------CAFVKLKDGCVANGEEIINYCRDR 190
E +L S+ LE VV +G E P A V + + +
Sbjct: 388 EGIL-SNVLGLEDVVV------YGVEVPGVEGRAGMAAIVDPERKV--DLDRFSAVLAKS 438
Query: 191 LPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKA 222
LP Y P+ + ++ KT T K QK L+++
Sbjct: 439 LPPYARPQFIRLLPEVDKTGTFKLQKTDLQKEG 471
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 6e-07
Identities = 50/167 (29%), Positives = 69/167 (41%), Gaps = 16/167 (9%)
Query: 66 VPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF-------DGG-WFRSGDLGVRHPDGYI 117
VP A GE+ G + GY T + F DGG +R+GDL DG +
Sbjct: 2527 VPQGA--TGELYVGGAGLAQGYHDRPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLV 2584
Query: 118 ELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAV--VGRPDDHW--GETPCAFVKLK 173
E R + G I E+ES L HP+V EA V + P G A
Sbjct: 2585 EYVGRIDHQVKIRGFRIELGEIESRLLEHPAVREAVVLALDTPSGKQLAGYLVSAVAGQD 2644
Query: 174 DGCVANGEEIIN-YCRDRLPHYMAP-RTVVFEDLPKTSTGKTQKYVL 218
D A E + + + +LP YM P ++ + LP T+ GK + L
Sbjct: 2645 DEAQAALREALKAHLKQQLPDYMVPAHLILLDSLPLTANGKLDRRAL 2691
|
Length = 4334 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 6e-07
Identities = 42/162 (25%), Positives = 60/162 (37%), Gaps = 40/162 (24%)
Query: 8 LTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVP 67
YG TET T W E I G+P G V +K P
Sbjct: 380 FYTGYGATETAPTTTGTHWDT-------ERVGLI----GLPLPG---------VELKLAP 419
Query: 68 SDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSKDI 126
K EV +G V GY K+ + T AFD G++R GD +++ D K +
Sbjct: 420 VGDKY--EVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAAR-----FVDPDDPEKGL 472
Query: 127 IISG--GEN----------ISTIEVESVLFSHPSVLEAAVVG 156
I G E+ + T+ ++V P + +A V G
Sbjct: 473 IFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAG 514
|
Length = 624 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 6e-07
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 73 IGEVMFRGNTVMNGYLKNLKATQDA--FDGG---WFRSGDLGVRHPDGYIELKDRSKDII 127
IGE++ G V Y +AT+ A DG W R GDLG G + R +
Sbjct: 387 IGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRV 446
Query: 128 ISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN 179
+ G + TI E + +HP V +A+VG + P V+L+ G +
Sbjct: 447 ETAGGTLYTIPCERIFNTHPGVKRSALVGVGVPG-AQRPVLCVELEPGVACS 497
|
Length = 552 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 7e-07
Identities = 64/216 (29%), Positives = 86/216 (39%), Gaps = 36/216 (16%)
Query: 17 TYGP--GTVCVWK--------PDWNSLPREEQAKI-KARQGVPHLGLDEIDIKDPVTMKS 65
TYGP TV V + LP I A+ P L +DE K P +
Sbjct: 292 TYGPTEATVAVTSIEITDEMLDQYKRLP------IGYAKPDSPLLIIDEEGTKLPDGEQ- 344
Query: 66 VPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF---DGGW-FRSGDLGVRHPDGYIELKD 121
GE++ G +V GYL N + T +AF DG + +GD G DG + +
Sbjct: 345 --------GEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQG 395
Query: 122 RSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN-- 179
R I G I E+E L V A VV DH + A+V K+
Sbjct: 396 RIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREF 455
Query: 180 --GEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGK 212
+ I ++RL YM PR ++ D LP T GK
Sbjct: 456 ELTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGK 491
|
Length = 503 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 41/153 (26%), Positives = 59/153 (38%), Gaps = 39/153 (25%)
Query: 11 AYGLTETYGPGTVCVWKPDWNSLPR------EE----QAKIKA--------RQGVPHLGL 52
+YGL E TV V + P E+ AK G P
Sbjct: 325 SYGLAE----ATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPRSPT 380
Query: 53 DEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF------------DG 100
+ I DP T P+ T+GE+ G+ V GY + + T+ F +G
Sbjct: 381 --VRIVDPDTCIECPAG--TVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEG 436
Query: 101 GWFRSGDLGVRHPDGYIELKDRSKDIIISGGEN 133
W R+GDLG +G + + R KD++I G N
Sbjct: 437 PWLRTGDLGFIS-EGELFIVGRIKDLLIVDGRN 468
|
Length = 578 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-06
Identities = 43/154 (27%), Positives = 61/154 (39%), Gaps = 21/154 (13%)
Query: 11 AYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQ-GVPHLGLDEIDIKDPVTMKSVPSD 69
YG TET TV + ++ + G P L + + D ++ VP
Sbjct: 267 LYGPTET----TVWS---TATLVDPDDAPRESPVPIGRP-LANTRLYVLDD-DLRPVPVG 317
Query: 70 AKTIGEVMFRGNTVMNGYLKNLKATQDAF---------DGGWFRSGDLGVRHPDGYIELK 120
+GE+ G V GYL + T + F +R+GDL PDG +E
Sbjct: 318 V--VGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFL 375
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAV 154
R D + G I E+E+ L HP V EA V
Sbjct: 376 GRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV 409
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 5e-06
Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 20/145 (13%)
Query: 7 TLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKI---KARQGVPHLGLDEIDIKDPVTM 63
L + YG TE T+ + E ++++ + LD+ +
Sbjct: 514 RLLNLYGPTEA----TLDAP---SFPISAELESRVPIGRPVANTQLYILDQG-------L 559
Query: 64 KSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDR 122
+ +P GE+ G + GYL T + F +R+GDL DG +E R
Sbjct: 560 RPLPLGV--PGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGR 617
Query: 123 SKDIIISGGENISTIEVESVLFSHP 147
+ G I E+E+ L P
Sbjct: 618 KDSQVKIRGFRIELGEIEAALAEQP 642
|
Length = 642 |
| >gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009) | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 5e-06
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 194 YMAPRTVVF-EDLPKTSTGKTQKYVLREKA 222
Y PR V F ++LPKT +GK + +LR A
Sbjct: 1 YAVPREVEFVDELPKTRSGKILRRLLRAIA 30
|
This is a small domain that is found C terminal to pfam00501. It has a central beta sheet core that is flanked by alpha helices. Length = 43 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 8e-06
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 36 EEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQ 95
K ++ G+P G+D + + + VP + G V+ RG ++ +GYL
Sbjct: 346 VNSPKHESCVGMPIRGMDVLIVSEET---KVPVSSGETGLVLTRGTSLFSGYLGEDFGQG 402
Query: 96 DAFDGG--WFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSH 146
GG W+ +GDLG G + LK R + G E +S +ES+L
Sbjct: 403 FVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEG 455
|
Length = 539 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 10/156 (6%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAF-------DGG-WFRSGDLGVRHPDGYIELKDRSKD 125
GE+ G + GYL T + F DG +R+GD + DG +E R
Sbjct: 1470 GELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQ 1529
Query: 126 IIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIIN 185
+ G + E+++ L + P V +AAV+ R + G + + G A E +
Sbjct: 1530 QVKLRGFRVEPEEIQARLLAQPGVAQAAVLVR-EGAAGAQLVGYYTGEAGQEAEAERLKA 1588
Query: 186 YCRDRLPHYMAPRTVV-FEDLPKTSTGKTQKYVLRE 220
LP YM P ++ + +P +GK + L E
Sbjct: 1589 ALAAELPEYMVPAQLIRLDQMPLGPSGKLDRRALPE 1624
|
Length = 4334 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 21/95 (22%)
Query: 57 IKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF------------------ 98
I DP T +P IGE+ GN + GY + T F
Sbjct: 404 IVDPETASELPDG--QIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPD 461
Query: 99 DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGEN 133
D W R+GD GV DG + + R KD++I G N
Sbjct: 462 DALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRN 495
|
Length = 631 |
| >gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 5e-05
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 22/96 (22%)
Query: 57 IKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF------------------ 98
I DP T +P +GE+ G+ + GY + T+ F
Sbjct: 415 IVDPDTGAELPDGE--VGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAA 472
Query: 99 -DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGEN 133
DG W R+GDLGV + DG + + R D+I+ G N
Sbjct: 473 DDGTWLRTGDLGV-YLDGELYITGRIADLIVIDGRN 507
|
Length = 612 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 9e-05
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSK 124
GE++ RG + GY K + T++ D GWF +GD+G +G + + R K
Sbjct: 508 GEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVK 559
|
Length = 700 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 21/65 (32%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDII-ISGG 131
GE++ + +++ +GY + T++AF + G+F++GD+ + +G + DRSK ++ +S G
Sbjct: 542 GELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQG 601
Query: 132 ENIST 136
E I T
Sbjct: 602 EYIET 606
|
Length = 746 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 3e-04
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 7/126 (5%)
Query: 92 KATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLE 151
A D + G W R GD P G I + RS + G + + E+ + + V E
Sbjct: 491 DAYFDTYPGVW-RHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRE 549
Query: 152 AAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTV---VFE--DLP 206
+ +G+ G FV L G + +++ + + ++PR V + E +P
Sbjct: 550 SLCIGQEQPDGGYRVVLFVHLAPG-ATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIP 608
Query: 207 KTSTGK 212
T TGK
Sbjct: 609 HTLTGK 614
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 46/200 (23%), Positives = 67/200 (33%), Gaps = 58/200 (29%)
Query: 73 IGEVMFRGNTVMNGYLKNLKATQDAFDGGWF----------------------------- 103
+GE+ R + GYL + + F WF
Sbjct: 621 VGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLY 680
Query: 104 RSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGR------ 157
R+GDLG PDG +E R+ D + G I E+++ L HP V E + R
Sbjct: 681 RTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEE 740
Query: 158 --------PDDHWGETPCAFVKLKDGCVANG-------------EEIINYCRDRLPHYMA 196
P D E F D ++ ++I Y + +LP Y
Sbjct: 741 PTLVSYIVPQDKSDELE-EFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAI 799
Query: 197 PRTVV-FEDLPKTSTGKTQK 215
P +V + LP GK K
Sbjct: 800 PTVIVPLKKLPLNPNGKVDK 819
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389 |
| >gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.004
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 104 RSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVE-SVLFSHPSVLEAAVVGRPDDHW 162
R GD+ R P GY ++ R+ D + GG S++E+E + + + E A VG
Sbjct: 360 RHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDG 419
Query: 163 G-ETPCAFVK---LKDG-CVANGEEIINYCRDRL-----PHYMAPRTVVFEDLPKTSTGK 212
G E F+ K G A E + ++ + P + R + +LP+ ++ K
Sbjct: 420 GPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELPRNASNK 479
Query: 213 TQKYVLREKAKAMGSISKK 231
+ VLR++ K S K
Sbjct: 480 LLRRVLRDQLKKELSGRSK 498
|
Length = 499 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 236 | |||
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 99.98 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 99.98 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 99.98 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 99.98 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 99.98 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.98 | |
| PRK05691 | 4334 | peptide synthase; Validated | 99.98 | |
| PRK05691 | 4334 | peptide synthase; Validated | 99.98 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 99.97 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 99.97 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 99.97 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 99.97 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 99.97 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 99.97 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 99.97 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 99.96 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 99.96 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 99.96 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 99.95 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.91 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 99.91 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 99.9 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.9 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.89 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 99.86 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.72 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.71 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.67 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 99.6 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 99.57 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 99.31 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.22 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 98.93 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 98.38 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 97.82 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 97.79 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 97.68 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 96.53 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 95.88 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 94.47 |
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=325.92 Aligned_cols=212 Identities=49% Similarity=0.805 Sum_probs=195.6
Q ss_pred cccc-CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEec
Q 046870 2 EELG-FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRG 80 (236)
Q Consensus 2 ~~~g-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~ 80 (236)
++++ ..+.+.||+||+++.++.+...+. ..+.++|.+++++ .+.|.+. +|..++++ +.||||++|
T Consensus 321 ~~l~~~~v~q~YGmTE~~~~~~~~~~~~e----------~k~~svG~~~~g~-~~~v~~e-~g~~l~~~--~~GEI~vrg 386 (537)
T KOG1176|consen 321 ERLPNVTVIQGYGMTEAGGLITSNDWGPE----------RKPGSVGRLLPGV-RVKVLDE-TGVSLGPN--QTGEICVRG 386 (537)
T ss_pred HhCCCceEEEeeccccccCceeecCCCcc----------CcccccCccccce-EEEeeCC-CCCCCCCC--CceEEEEEC
Confidence 4567 899999999999977776654322 3457899999987 7777776 99999998 889999999
Q ss_pred CCcchhhcCCchhhhcccCC-CeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccC
Q 046870 81 NTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPD 159 (236)
Q Consensus 81 ~~~~~~y~~~~~~~~~~~~~-g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 159 (236)
+.++.||++||++|.+.|.+ |||+|||+|++|+||+|+|++|.+|+||.+|+.|+|.+||++|..||.|.|++|++.++
T Consensus 387 ~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipD 466 (537)
T KOG1176|consen 387 PQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPD 466 (537)
T ss_pred cccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccc
Confidence 99999999999999999976 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCC
Q 046870 160 DHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGS 227 (236)
Q Consensus 160 ~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~ 227 (236)
+.+|+.++|+|+.+++...+.+++.+++++++++|+.|..+.|++ ||+|++|||+|+.|++++.+..+
T Consensus 467 e~~Ge~p~A~VV~k~g~~lte~di~~~v~k~l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~~~~ 535 (537)
T KOG1176|consen 467 EVWGETPAAFVVLKKGSTLTEKDIIEYVRKKLPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKKLGS 535 (537)
T ss_pred cccCCcceEEEEecCCCcCCHHHHHHHHHhhCChhhccCeEEEeccCCCCCcchHHHHHHHHHHHhccc
Confidence 999999999999999888999999999999999999999999887 99999999999999999988754
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=285.66 Aligned_cols=206 Identities=35% Similarity=0.512 Sum_probs=182.7
Q ss_pred ccccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecC
Q 046870 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 2 ~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
+.+|++|.+.||+||+|++.+.... ....++.|.|+||+ ++.|+|+ +|++++++ + |+|+++.+
T Consensus 312 ~~~g~~i~d~~gqTEtg~~~~~~~~------------~~~~g~~g~p~pG~-~~~vvdd-~g~~~~~~--~-G~Lvi~~~ 374 (528)
T COG0365 312 SALGVWILDIYGQTETGMGFIAGRP------------PVKNGSSGLPLPGY-AVRRVDD-EGNPVPPG--V-GELVVRLP 374 (528)
T ss_pred HHhCCCEeccccccccCccccCCCC------------CcCCCCCCCCCCCc-eeEEECC-CCCcCCCC--c-eEEEEeCC
Confidence 4578999999999999855544322 12334569999999 9999998 49999988 7 99999986
Q ss_pred --CcchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccC
Q 046870 82 --TVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPD 159 (236)
Q Consensus 82 --~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 159 (236)
+++++||+||+.+.+.+-+.||.|||.+++|+||+++|+||.||+||+.|+++.+.+||+.|.+||.|.|++|++.++
T Consensus 375 ~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd 454 (528)
T COG0365 375 WPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPD 454 (528)
T ss_pred CchhhhhhhCCHHHHHHHHhhceeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccC
Confidence 999999999999988876669999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEeCCCCCCC--HHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHh
Q 046870 160 DHWGETPCAFVKLKDGCVAN--GEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKA 224 (236)
Q Consensus 160 ~~~~~~~~~~v~~~~~~~~~--~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~ 224 (236)
+..++.+.+||+++++...+ .++|++++++.+.++..|+.|.+++ ||+|.+|||.|+.|++.+.+
T Consensus 455 ~~kg~~v~afVvL~~g~~~~~L~~ei~~~vr~~~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~~~ 522 (528)
T COG0365 455 PGKGQIVLAFVVLAAGVEPNELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILHK 522 (528)
T ss_pred CCCCcEEEEEEEecCCCChHHHHHHHHHHHHhccCcccCCceEEEecCCCCCCcccHHHHHHHHHHhh
Confidence 99999999999999875433 3567788877888899999999887 99999999999999999985
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=291.87 Aligned_cols=210 Identities=45% Similarity=0.727 Sum_probs=186.5
Q ss_pred cccc-CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEec
Q 046870 2 EELG-FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRG 80 (236)
Q Consensus 2 ~~~g-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~ 80 (236)
+.|+ .++++.||+||+++.++...... . .....++|.|++++ +++|+|++++.++| + ++|||+++|
T Consensus 313 ~~~~~~~i~~~YG~TE~~~~~~~~~~~~-~--------~~~~~~~G~~~pg~-~v~Ivd~~~~~~~p-g--~vGei~irg 379 (534)
T COG0318 313 ERFGPIAILEGYGLTETSPVVTINPPDD-L--------LAKPGSVGRPLPGV-EVRIVDPDGGEVLP-G--EVGEIWVRG 379 (534)
T ss_pred HHhCCCceEEeecccccCceeecCCCch-h--------hhcCCcccccCCCc-EEEEEeCCCCccCC-C--CceEEEEEC
Confidence 3566 47999999999987666554321 0 12345679999999 99999985665666 4 799999999
Q ss_pred CCcchhhcCCchhhhcccCC-CeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccC
Q 046870 81 NTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPD 159 (236)
Q Consensus 81 ~~~~~~y~~~~~~~~~~~~~-g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 159 (236)
|+++.|||++|+.|...|.+ |||+|||++++|++|+++|.||.+|+|+.+|++|+|.+||+.+.++|.|.+++|+++++
T Consensus 380 p~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd 459 (534)
T COG0318 380 PNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPD 459 (534)
T ss_pred chhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCC
Confidence 99999999999999998875 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEeCCC--CCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHh
Q 046870 160 DHWGETPCAFVKLKDG--CVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKA 224 (236)
Q Consensus 160 ~~~~~~~~~~v~~~~~--~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~ 224 (236)
+.+++.+++++++++. ...+..++.++++.+++.++.|+.+.+++ ||+|++||++|+.|++++..
T Consensus 460 ~~~Ge~~~a~v~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 460 ERWGERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA 527 (534)
T ss_pred CccCceEEEEEEEcCCCCCCCCHHHHHHHHHhhhhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence 9999999999999876 34578999999999999999999999876 99999999999999999987
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=287.91 Aligned_cols=209 Identities=26% Similarity=0.386 Sum_probs=179.8
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecC-
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN- 81 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~- 81 (236)
.+|+++++.||+||++++++...... .....++|.|++++ .++|+|+ +|++++.+ +.|||++++|
T Consensus 403 ~~g~~i~~~yG~TE~~~~~~~~~~~~----------~~~~~s~G~p~~g~-~~~i~d~-~g~~~~~g--e~GEl~v~~p~ 468 (647)
T PTZ00237 403 KLKIKSSRGYGQTEIGITYLYCYGHI----------NIPYNATGVPSIFI-KPSILSE-DGKELNVN--EIGEVAFKLPM 468 (647)
T ss_pred hcCCCEEeeechHHhChhhhccCCCC----------CCCCCCCccCcCCc-eEEEECC-CCCCCCCC--CceEEEEeccC
Confidence 47899999999999986544322100 01235799999999 9999998 89999877 8899999985
Q ss_pred --CcchhhcCCchhhhcccC--CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEec
Q 046870 82 --TVMNGYLKNLKATQDAFD--GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGR 157 (236)
Q Consensus 82 --~~~~~y~~~~~~~~~~~~--~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 157 (236)
+++.|||++++.+.+.|. +|||+|||+++++++|+++|+||.||+||++|++|+|.+||+.|.+||.|.+++|++.
T Consensus 469 ~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~ 548 (647)
T PTZ00237 469 PPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGI 548 (647)
T ss_pred CchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEee
Confidence 789999999999887774 7999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEeCCCC---CCCH----HHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 158 PDDHWGETPCAFVKLKDGC---VANG----EEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 158 ~~~~~~~~~~~~v~~~~~~---~~~~----~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
+++..++.++++|++.++. ..+. ++|.++++++++++++|+.+++++ ||+|++||++|+.|++++...
T Consensus 549 ~~~~~g~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~ 624 (647)
T PTZ00237 549 YDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLNDS 624 (647)
T ss_pred EcCCCCCEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCccccCcEEEEcCCCCCCCCccEeHHHHHHHHcCC
Confidence 9988889999999987432 2233 456778888999999999998887 999999999999999998544
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=262.63 Aligned_cols=212 Identities=36% Similarity=0.584 Sum_probs=190.4
Q ss_pred eeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcchh
Q 046870 7 TLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNG 86 (236)
Q Consensus 7 ~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~~ 86 (236)
.|..+||+||+++..+....+ +.......++|...+.. +..|+|. .|.++|.+ ..|||+++|++.+.+
T Consensus 378 ~i~v~YG~TEts~v~~~~~~~--------D~~~~~~ksVG~~m~h~-Ea~iv~~-~g~~v~~~--~~Gel~iRGY~tMl~ 445 (596)
T KOG1177|consen 378 DIAVAYGLTETSPVLFMSLLG--------DPPEERIKSVGHLMDHY-EAAIVDK-DGSEVPLG--TKGELLIRGYSTMLG 445 (596)
T ss_pred eeEEEeeccccCcceeeecCC--------CCHHHHHhhhhhccccc-ccccccC-CCCccccC--CCceEEEEechhhee
Confidence 377899999999877766433 22334556899999998 9999995 99999998 569999999999999
Q ss_pred hcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCCce
Q 046870 87 YLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGET 165 (236)
Q Consensus 87 y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~ 165 (236)
||++++.|.+.. .|.||+|||++.+|++|.++++||.+|+|+.+|++|+|.+||+.|.+||.|.++.|++++++..++.
T Consensus 446 Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~ 525 (596)
T KOG1177|consen 446 YWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEE 525 (596)
T ss_pred ecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccce
Confidence 999998888766 4889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCC--CCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCCccc
Q 046870 166 PCAFVKLKDGCV--ANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSISK 230 (236)
Q Consensus 166 ~~~~v~~~~~~~--~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~~~~ 230 (236)
++++|.+..... ...++|+.+++.++..|++|+.+++++ ||+|.+|||+|.+++++.+.+.++-.
T Consensus 526 VCA~vRLqe~~e~~~t~E~lKa~Ck~klaHFKiPky~vf~~~FPlT~tGKIqKFeir~~~k~~l~l~~ 593 (596)
T KOG1177|consen 526 VCACVRLQEGAEGKTTAETLKAMCKGKLAHFKIPKYFVFVDEFPLTTTGKIQKFEIREMSKGHLGLFT 593 (596)
T ss_pred EEEEEEeeccccccccHHHHHHHHhcccccccCCcEEEEeccCcccccccchhHHHHHHHHhhcceee
Confidence 999999987654 478999999999999999999999877 99999999999999999998776544
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=277.86 Aligned_cols=212 Identities=33% Similarity=0.539 Sum_probs=185.8
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
++++++.||+||++.+........ ......++|.+.+++ +++|+|++++++++.+ +.|||+++|+.++
T Consensus 345 ~~~v~~~YG~tE~~~~~~~~~~~~---------~~~~~~~vG~~~~~~-~v~i~d~~~g~~~~~g--~~Gei~v~g~~~~ 412 (560)
T PLN02574 345 HVDFIQGYGMTESTAVGTRGFNTE---------KLSKYSSVGLLAPNM-QAKVVDWSTGCLLPPG--NCGELWIQGPGVM 412 (560)
T ss_pred CCcEEecccccccCceeecCCCcc---------ccCCCCceeeeCCCc-EEEEEeCCCCcCCCCC--CCeEEEEECcchh
Confidence 689999999999975443211110 001235799999999 9999997689999887 8899999999999
Q ss_pred hhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCC
Q 046870 85 NGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWG 163 (236)
Q Consensus 85 ~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 163 (236)
.||+++++.+.+.| .+|||+|||+++++++|++++.||.+|+|+++|+++++.+||+.|.+++.|.++++++.+++..+
T Consensus 413 ~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g 492 (560)
T PLN02574 413 KGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECG 492 (560)
T ss_pred hhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCC
Confidence 99999999998876 48999999999999999999999999999999999999999999999999999999999888878
Q ss_pred ceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCCc
Q 046870 164 ETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSI 228 (236)
Q Consensus 164 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~~ 228 (236)
+.++++|+..++...+.+++.+++++++++|+.|..+.+++ ||+|++||++|+.|++++.+..+.
T Consensus 493 ~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~~~~~ 558 (560)
T PLN02574 493 EIPVAFVVRRQGSTLSQEAVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTNSVSS 558 (560)
T ss_pred cceEEEEEeCCCCCCCHHHHHHHHHHhccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhhcccc
Confidence 88999998887666778899999999999999999887766 999999999999999999776654
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=273.62 Aligned_cols=214 Identities=22% Similarity=0.256 Sum_probs=170.3
Q ss_pred ccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCc
Q 046870 4 LGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTV 83 (236)
Q Consensus 4 ~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~ 83 (236)
+++++++.||+||++...+..... . .....++|.|.+++ +++|+|+ +|++++.|.+++|||+++|+.+
T Consensus 262 ~~~~~~~~YG~TE~~~~~~~~~~~-~---------~~~~~~~G~p~~~~-~~~ivd~-~g~~~~~g~~~~Gel~v~g~~~ 329 (499)
T PLN03051 262 YYKPVIEYCGGTELASGYISSTLL-Q---------PQAPGAFSTASLGT-RFVLLND-NGVPYPDDQPCVGEVALAPPML 329 (499)
T ss_pred ccceeEeeeccccccceeeccccc-C---------CCCCccccCCCCCc-eEEEECC-CCCCCCCCCCcceEEEEecCcC
Confidence 347899999999986533221110 0 01235799999999 9999997 8999988754689999999975
Q ss_pred --chhhcCCchhhhcccCCC----------eEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhc-CCCcc
Q 046870 84 --MNGYLKNLKATQDAFDGG----------WFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFS-HPSVL 150 (236)
Q Consensus 84 --~~~y~~~~~~~~~~~~~g----------~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~ 150 (236)
+.|||+++ .+. .+.+| ||+|||++++|++|+|+|+||.+|+||++|++|+|.+||+.|.+ ||.|.
T Consensus 330 ~~~~gy~~~~-~~~-~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~ 407 (499)
T PLN03051 330 GASDRLLNAD-HDK-VYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIA 407 (499)
T ss_pred CCCccccCCc-ccc-eeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcc
Confidence 57999765 333 22233 78999999999999999999999999999999999999999996 89999
Q ss_pred eEEEEeccCCCCC-ceeEEEE---EeCCCC-CCCHHHHHHHH----HhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHH
Q 046870 151 EAAVVGRPDDHWG-ETPCAFV---KLKDGC-VANGEEIINYC----RDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLRE 220 (236)
Q Consensus 151 ~~~v~~~~~~~~~-~~~~~~v---~~~~~~-~~~~~~l~~~l----~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~ 220 (236)
+++|++++++..+ +.++++| +++++. ..+..++.+++ .++++++..|..+.+++ ||+|++||++|++|++
T Consensus 408 ~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~ 487 (499)
T PLN03051 408 ETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELPRNASNKLLRRVLRD 487 (499)
T ss_pred eEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHHHhhcCCccCCceEEEcCCCCCCCCccHHHHHHHH
Confidence 9999999988888 6788888 666553 34556666555 45577766666677766 9999999999999999
Q ss_pred HHHhcCCcccc
Q 046870 221 KAKAMGSISKK 231 (236)
Q Consensus 221 ~~~~~~~~~~~ 231 (236)
++.+..+.++|
T Consensus 488 ~~~~~~~~~~~ 498 (499)
T PLN03051 488 QLKKELSGRSK 498 (499)
T ss_pred HHHHhhccccC
Confidence 99998887765
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=276.57 Aligned_cols=224 Identities=56% Similarity=1.012 Sum_probs=179.6
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||+++.++.+.....++..+...........|.+..+...+.+.+.+.+.+++.+.++.|||+++|++
T Consensus 322 ~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~i~~~~~~~~v~~~~~~~GEl~v~g~~ 401 (579)
T PLN03102 322 RLGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSS 401 (579)
T ss_pred HcCCeEEeecCccccCccccccccccccccCCcccccccccCCCcccccccceEEeccccccccCCCCCCceEEEEECcc
Confidence 46889999999999986554432222111111111011111234443333366777765777787644467999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.|||++|+.+...|.+|||+|||+++++++|++++.||.+|+|+.+|++|+|.+||+.+.++|.|.+++|++.+++..
T Consensus 402 ~~~GY~~~~~~t~~~f~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~ 481 (579)
T PLN03102 402 IMKGYLKNPKATSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTW 481 (579)
T ss_pred hhhhhcCChhhhHhhhccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CceeEEEEEeCCCCCC----------CHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 163 GETPCAFVKLKDGCVA----------NGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~----------~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
++.++++|++.++... ...++.++++++|++|++|..+.+.+ ||+|++||++|++|++++.++.
T Consensus 482 ~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~~~~~ 556 (579)
T PLN03102 482 GETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRDIAKGLV 556 (579)
T ss_pred cceeEEEEEecCcccccccccccccccHHHHHHHHHhhcccccCCeEEEEcccCCCCCcccccHHHHHHHHHHhh
Confidence 8899999987754322 35689999999999999999998776 9999999999999999987754
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=275.84 Aligned_cols=202 Identities=36% Similarity=0.565 Sum_probs=177.9
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|.++++.||+||++.+..... .+......++|.|++++ .++|+|+ ++++++.| +.|||++++++
T Consensus 346 ~~~~~l~~~YG~TE~~~~~~~~~----------~~~~~~~~~vG~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~g~~ 411 (549)
T PRK07788 346 AFGPVLYNLYGSTEVAFATIATP----------EDLAEAPGTVGRPPKGV-TVKILDE-NGNEVPRG--VVGRIFVGNGF 411 (549)
T ss_pred HhCccceeccCcchhchhhccCh----------hhhhhcCCCcccCCCCc-EEEEECC-CcCCCCCC--CeEEEEEeCCC
Confidence 56888999999999975443221 11112345799999999 9999998 88999886 89999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.||++++.. ...+|||+|||+++++++|.++|.||.+|+|+++|++|+|.+||+.|.++|.|.++++++.+++..
T Consensus 412 ~~~gY~~~~~~---~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~ 488 (549)
T PRK07788 412 PFEGYTDGRDK---QIIDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEF 488 (549)
T ss_pred ccccccCCCcc---cccCCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCccc
Confidence 99999998765 334899999999999999999999999999999999999999999999999999999999998888
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHH
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREK 221 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~ 221 (236)
++.++++|++.++...+.+++.+++++++++|++|..+.+++ ||+|++||++|++|+++
T Consensus 489 g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 548 (549)
T PRK07788 489 GQRLRAFVVKAPGAALDEDAIKDYVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELREM 548 (549)
T ss_pred ccEEEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCCcEEEEeCCCCCCCCcCEeHHHhhcc
Confidence 899999999888766788999999999999999999998776 99999999999999764
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=274.37 Aligned_cols=210 Identities=32% Similarity=0.549 Sum_probs=185.4
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||+++++...... .....++|.|++++ .++|+|+ ++.+++.+ +.|||+++++.
T Consensus 349 ~~~~~v~~~YG~tE~~~~~~~~~~~-----------~~~~~~vG~~~~~~-~v~i~d~-~~~~~~~g--~~Gel~v~g~~ 413 (562)
T PRK05677 349 VTGCAICEGYGMTETSPVVSVNPSQ-----------AIQVGTIGIPVPST-LCKVIDD-DGNELPLG--EVGELCVKGPQ 413 (562)
T ss_pred HcCCCeeccCCccccCcceeecCcc-----------CCCCCccCccCCCC-EEEEECC-CCCCCCCC--CCeEEEEecCc
Confidence 3688999999999997654432211 01235799999999 9999998 78888887 88999999999
Q ss_pred cchhhcCCchhhhcccC-CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCC
Q 046870 83 VMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 161 (236)
++.||+++|+.+.+.|. +|||+|||+++++++|++++.||.+|+|+++|.+++|.+||+.|.+++.|.+++|++++++.
T Consensus 414 ~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~ 493 (562)
T PRK05677 414 VMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEK 493 (562)
T ss_pred cchhhcCCchhhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcc
Confidence 99999999999988875 89999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCC
Q 046870 162 WGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGS 227 (236)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~ 227 (236)
.++.+++++++.+....+..++.+++++.+++|++|..+.+++ ||+|++||++|++|++++.....
T Consensus 494 ~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~sGKi~r~~L~~~~~~~~~ 560 (562)
T PRK05677 494 SGEAIKVFVVVKPGETLTKEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRRELRDEELKKAG 560 (562)
T ss_pred CCceEEEEEEeCCCCCCCHHHHHHHHHHhhhhccCCcEEEEeccCCCCCcccccHHHHHHHHHHhcc
Confidence 7888888888776656788899999999999999999998777 99999999999999987766543
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=279.84 Aligned_cols=207 Identities=28% Similarity=0.375 Sum_probs=179.6
Q ss_pred CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEec--CCc
Q 046870 6 FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRG--NTV 83 (236)
Q Consensus 6 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~--~~~ 83 (236)
+++.+.||+||+++..+..... . ......++|.|++++ .++|+|+ +|++++.+ +.|||++++ |++
T Consensus 426 ~~i~~~yg~TE~g~~~~~~~~~--~-------~~~~~gs~G~p~~g~-~v~i~d~-~g~~~~~~--~~Gel~v~~~~p~~ 492 (666)
T PLN02654 426 CPISDTWWQTETGGFMITPLPG--A-------WPQKPGSATFPFFGV-QPVIVDE-KGKEIEGE--CSGYLCVKKSWPGA 492 (666)
T ss_pred CceeccccccccCCeeeccCCC--C-------CCCCCCccCCCCCCc-eEEEECC-CCCCCCCC--CceEEEEcCCCchh
Confidence 6899999999998654432210 0 012345799999999 9999997 88988766 789999998 789
Q ss_pred chhhcCCchhhhccc---CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 84 MNGYLKNLKATQDAF---DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 84 ~~~y~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
+.+||++++.+...+ .+|||+|||++++|++|+++|+||.||+||++|++|+|.+||+.|.+||.|.+++|++.+++
T Consensus 493 ~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~ 572 (666)
T PLN02654 493 FRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHE 572 (666)
T ss_pred hhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcC
Confidence 999999998887654 27999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceeEEEEEeCCCCCCCH---HHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 161 HWGETPCAFVKLKDGCVANG---EEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
..++.++++|++.++...+. ++|.++++++|+++++|+.+++++ ||+|.+||++|++|++++...
T Consensus 573 ~~ge~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~~~ 641 (666)
T PLN02654 573 VKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 641 (666)
T ss_pred CCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCCCCcCchHHHHHHHHcCC
Confidence 88999999999987654433 478889999999999999998887 999999999999999998753
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=273.88 Aligned_cols=209 Identities=33% Similarity=0.520 Sum_probs=182.2
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEec--
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRG-- 80 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~-- 80 (236)
.+|.++++.||+||+++.+....... .....++|.|++++ .++|+|+ ++.+++.+ +.|||++++
T Consensus 346 ~~g~~i~~~YG~tE~~~~~~~~~~~~----------~~~~~~~G~p~~g~-~~~i~d~-~~~~~~~g--~~Gel~i~~~~ 411 (570)
T PRK04319 346 VFGLPIHDNWWMTETGGIMIANYPAM----------DIKPGSMGKPLPGI-EAAIVDD-QGNELPPN--RMGNLAIKKGW 411 (570)
T ss_pred HhCCCeEeceeecccCCEEEecCCCC----------CCCCCcCcCCCCCC-EEEEECC-CCCCCCCC--CceEEEEcCCC
Confidence 47889999999999986544321110 01235799999999 9999997 88888776 899999997
Q ss_pred CCcchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 81 NTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 81 ~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
++++.||+++++.+.+.+.+|||+|||+++++++|+++++||.+|+|+.+|++|+|.+||+.+.++|.|.+++|++.+++
T Consensus 412 ~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~ 491 (570)
T PRK04319 412 PSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDP 491 (570)
T ss_pred ChHHhHhcCCHHHhhhhhcCCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCc
Confidence 78999999999999998889999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceeEEEEEeCCCCCCC---HHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 161 HWGETPCAFVKLKDGCVAN---GEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
..++.+++++++.++.... .+++.+++++.++.|+.|..+++++ ||+|++||++|++|+++..+.
T Consensus 492 ~~g~~~~a~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~ 560 (570)
T PRK04319 492 VRGEIIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRVLKAWELGL 560 (570)
T ss_pred CCceEEEEEEEECCCCCCCHHHHHHHHHHHHHhcccccCCcEEEEeCCCCCCCchhhhHHHHHHHHhCC
Confidence 8888999999988754333 2578899999999999999998777 999999999999999997543
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=267.82 Aligned_cols=208 Identities=36% Similarity=0.583 Sum_probs=184.9
Q ss_pred ccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCc
Q 046870 4 LGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTV 83 (236)
Q Consensus 4 ~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~ 83 (236)
.|+++++.||+||++..+....... ......++|+|++++ .++|+|+ +++.++.| +.|||+|+++.+
T Consensus 287 ~g~~~~~~YG~tE~~~~~~~~~~~~---------~~~~~~~~G~p~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~~~ 353 (496)
T PRK06839 287 RGFLFGQGFGMTETSPTVFMLSEED---------ARRKVGSIGKPVLFC-DYELIDE-NKNKVEVG--EVGELLIRGPNV 353 (496)
T ss_pred hCCeeEeeccCCCCCcceEeccccc---------ccccCCCCcccCCCc-eEEEECC-CcCCCCCC--CceEEEEECCCc
Confidence 3789999999999986544332111 112345799999999 9999998 77778777 889999999999
Q ss_pred chhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCC
Q 046870 84 MNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWG 163 (236)
Q Consensus 84 ~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 163 (236)
+.||+++++.+...+.+|||+|||+++++++|.+++.||.+|+|+.+|.+++|.+||+.|.+++.|.++++++.++...+
T Consensus 354 ~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g 433 (496)
T PRK06839 354 MKEYWNRPDATEETIQDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWG 433 (496)
T ss_pred chhhcCChHHHHHHHcCCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccC
Confidence 99999999999888889999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHh
Q 046870 164 ETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKA 224 (236)
Q Consensus 164 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~ 224 (236)
+.++++|++++....+..++++++++.++++++|..+++++ +|+|.+||++|++|+++.++
T Consensus 434 ~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~~P~t~~GKi~r~~l~~~~~~ 495 (496)
T PRK06839 434 EIPIAFIVKKSSSVLIEKDVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLKS 495 (496)
T ss_pred ceEEEEEEECCCCCCCHHHHHHHHHhhCcCCCCCcEEEEeccCCCCccccccHHHHHHHhhc
Confidence 89999999888767788899999999999999999998776 99999999999999998765
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=276.14 Aligned_cols=209 Identities=35% Similarity=0.564 Sum_probs=178.5
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEe--CCCCC---cccCCCCCceeEEE
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIK--DPVTM---KSVPSDAKTIGEVM 77 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~--d~~~~---~~~~~~~~~~Gel~ 77 (236)
.+|+++++.||+||++.++..+... ......++|.|++++ .++|+ |+ +| .+++.+ +.|||+
T Consensus 356 ~~g~~l~~~YG~TE~~~~~~~~~~~----------~~~~~~svG~~~p~~-~v~i~~~d~-~g~~~~~~~~g--~~Gel~ 421 (632)
T PRK07529 356 ATGVRIVEGYGLTEATCVSSVNPPD----------GERRIGSVGLRLPYQ-RVRVVILDD-AGRYLRDCAVD--EVGVLC 421 (632)
T ss_pred HhCCcEeeeecccccCcccccCCcc----------ccccCCCcccccCCc-eEEEEEcCC-CCcccccCCCC--CceEEE
Confidence 4789999999999997655433211 012345899999998 88875 54 56 677766 889999
Q ss_pred EecCCcchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEec
Q 046870 78 FRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGR 157 (236)
Q Consensus 78 v~~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 157 (236)
|+|+.++.||++++......+.+|||+|||+++++++|++++.||.+|+|+++|++|+|.+||+.|.++|.|.++++++.
T Consensus 422 v~gp~v~~GY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~ 501 (632)
T PRK07529 422 IAGPNVFSGYLEAAHNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGR 501 (632)
T ss_pred EECCCccccccCCccccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEec
Confidence 99999999999876544333368999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCC-CCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 158 PDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLP-HYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 158 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~-~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
++...++.++++|++.++...+.+++.++++++++ .+++|..+++++ ||+|++||++|++|++++...
T Consensus 502 ~d~~~ge~~~a~v~l~~~~~~~~~~l~~~~~~~l~~~~~~P~~i~~v~~lP~t~~GKi~r~~Lr~~~~~~ 571 (632)
T PRK07529 502 PDAHAGELPVAYVQLKPGASATEAELLAFARDHIAERAAVPKHVRILDALPKTAVGKIFKPALRRDAIRR 571 (632)
T ss_pred cCCCCCceeEEEEEEcCCCCCCHHHHHHHHHHhcchhccCCcEEEEecCCCCCCCCcccHHHHHHHHHHH
Confidence 98888999999999998777788999999999986 579999998776 999999999999999988663
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=276.15 Aligned_cols=214 Identities=26% Similarity=0.327 Sum_probs=180.0
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecC-
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN- 81 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~- 81 (236)
.+|.++++.||+||++..+........ ......+++|.|++++ .++|+|+++|++++.+ +.|||++++|
T Consensus 377 ~~~~~~~~~yG~TE~~~~~~~~~~~~~-------~~~~~~gs~G~p~~g~-~v~i~d~~~g~~~~~g--~~Gel~v~gp~ 446 (628)
T TIGR02316 377 GLGKPVIDNYWQTETGWPVLAIMPGLD-------LKPVKLGSPGLPMYGY-HLRVLDEATGRPCGPN--EKGVLTVVPPL 446 (628)
T ss_pred HhCCCEEecccccccCceeecCCCCCC-------cCCCCCCCcccCcCCc-eEEEEECCCCCCCCCC--CcEEEEEecCC
Confidence 467889999999999854332211100 0012345789999999 9999998679999877 8899999998
Q ss_pred --CcchhhcCCchhhhcc----cCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEE
Q 046870 82 --TVMNGYLKNLKATQDA----FDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVV 155 (236)
Q Consensus 82 --~~~~~y~~~~~~~~~~----~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 155 (236)
+.+.+||++++.+.+. +.++||+|||++++|++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|+
T Consensus 447 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vv 526 (628)
T TIGR02316 447 PPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVV 526 (628)
T ss_pred CccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEE
Confidence 4678999998877654 3577999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCceeEEEEEeCCCCCC--------CHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 156 GRPDDHWGETPCAFVKLKDGCVA--------NGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~~~~~~--------~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
+.+++..++.++++|++.+.... ..++|.++++++|++|++|..+++++ ||+|++||++|++|++++....
T Consensus 527 g~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~~~ 606 (628)
T TIGR02316 527 GVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALAEGRD 606 (628)
T ss_pred eeecCCCCeEEEEEEEEcCCcccccccchHHHHHHHHHHHHHhcCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHHcCCC
Confidence 99998888999999988764321 24678999999999999999998877 9999999999999999987554
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=274.75 Aligned_cols=207 Identities=28% Similarity=0.400 Sum_probs=179.7
Q ss_pred CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEec--CCc
Q 046870 6 FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRG--NTV 83 (236)
Q Consensus 6 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~--~~~ 83 (236)
+++++.||+||+++..+...... ......++|.|++++ .++|+|+ +|++++.+ +.|||++++ +++
T Consensus 396 ~~i~~~YG~TE~~~~~~~~~~~~---------~~~~~~~vG~p~~g~-~~~i~d~-~g~~~~~g--~~Gel~v~g~~p~~ 462 (637)
T PRK00174 396 CPIVDTWWQTETGGIMITPLPGA---------TPLKPGSATRPLPGI-QPAVVDE-EGNPLEGG--EGGNLVIKDPWPGM 462 (637)
T ss_pred CceEecccccccCCceEecCCCC---------CCcCCCcccCCCCCc-eEEEECC-CCCCCCCC--CcEEEEEcCCCCcc
Confidence 78999999999987554321110 001235799999999 9999997 89999877 889999999 689
Q ss_pred chhhcCCchhhhccc---CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 84 MNGYLKNLKATQDAF---DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 84 ~~~y~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
+.|||++++.+...+ .+|||+|||+++++++|+++|+||.||+|+++|++|+|.+||+.|.+++.|.+++|++.+++
T Consensus 463 ~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~ 542 (637)
T PRK00174 463 MRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDD 542 (637)
T ss_pred cccccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcC
Confidence 999999998877654 37899999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceeEEEEEeCCCCCCC---HHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 161 HWGETPCAFVKLKDGCVAN---GEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
..++.+++++++.++...+ .++|.++++++|+.++.|..+.+++ ||+|++||++|++|+++....
T Consensus 543 ~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 611 (637)
T PRK00174 543 IKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGE 611 (637)
T ss_pred CCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC
Confidence 8889999999988764433 4689999999999999999998877 999999999999999987665
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=264.88 Aligned_cols=210 Identities=34% Similarity=0.576 Sum_probs=182.3
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
|+++++.||+||++.+..... .. ........++|.|.+++ .++|+|+ ++.+++.+ +.|||++++++++
T Consensus 276 g~~v~~~YG~TE~~~~~~~~~-~~-------~~~~~~~~~vG~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~~~~ 343 (488)
T PRK09088 276 GIPMVDGFGMSEAGTVFGMSV-DC-------DVIRAKAGAAGIPTPTV-QTRVVDD-QGNDCPAG--VPGELLLRGPNLS 343 (488)
T ss_pred CCceeeeecccccccccccCC-Cc-------ccccccCCccccCCCCc-EEEEECC-CCCCCcCC--CceEEEEECCccc
Confidence 789999999999986542211 00 00011335799999999 9999997 78888877 8899999999999
Q ss_pred hhhcCCchhhhcccC-CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCC
Q 046870 85 NGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWG 163 (236)
Q Consensus 85 ~~y~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 163 (236)
.||+++++.+...+. +|||+|||+++++++|.++++||.+|+|+.+|.++++.+||+.|..++.|.++++++.+++..+
T Consensus 344 ~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g 423 (488)
T PRK09088 344 PGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWG 423 (488)
T ss_pred hhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCC
Confidence 999999998887764 8999999999999999999999999999999999999999999999999999999999887767
Q ss_pred ceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 164 ETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 164 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
+..++++++.+....+.+++.+.+++.++++++|..+.+++ ||+|++||++|++|++++.+.+
T Consensus 424 ~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~~~~~~ 487 (488)
T PRK09088 424 EVGYLAIVPADGAPLDLERIRSHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLRDALAAGR 487 (488)
T ss_pred ceeEEEEEECCCCCCCHHHHHHHHHhhCcCCCCCCEEEEcccCCCCCCCceeHHHHHHHHHhcC
Confidence 78888888877655678899999999999999999998777 9999999999999999988764
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=273.86 Aligned_cols=207 Identities=30% Similarity=0.417 Sum_probs=179.6
Q ss_pred CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccC-CCCCceeEEEEec--CC
Q 046870 6 FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVP-SDAKTIGEVMFRG--NT 82 (236)
Q Consensus 6 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~-~~~~~~Gel~v~~--~~ 82 (236)
+++++.||+||+++.++..... . ......++|+|++++ +++|+|+ +|++++ .+ +.|||++++ |+
T Consensus 387 ~~i~~~yG~TE~~~~~~~~~~~--~-------~~~~~~~~G~p~~g~-~~~i~d~-~g~~~~~~g--~~GeL~v~~p~p~ 453 (625)
T TIGR02188 387 CPIVDTWWQTETGGIMITPLPG--A-------TPTKPGSATLPFFGI-EPAVVDE-EGNPVEGPG--EGGYLVIKQPWPG 453 (625)
T ss_pred CceEecccccccCCceeecCCC--C-------CCcCCCcccCCcCCc-eEEEECC-CCCCCCCCC--CeEEEEEccCCCc
Confidence 7899999999998764432211 0 012345799999999 9999996 899887 66 889999999 58
Q ss_pred cchhhcCCchhhhccc---CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccC
Q 046870 83 VMNGYLKNLKATQDAF---DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPD 159 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 159 (236)
++.|||++++.+...+ .+|||+|||+++++++|+++|+||.||+|+++|++++|.+||+.|.++|.|.+++|++.++
T Consensus 454 ~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~ 533 (625)
T TIGR02188 454 MLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPD 533 (625)
T ss_pred ccccccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEc
Confidence 9999999998776654 3789999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCceeEEEEEeCCCCCCC---HHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 160 DHWGETPCAFVKLKDGCVAN---GEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 160 ~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
+..++.++++|++.++...+ .++|.+++++++++++.|..+++++ ||+|.+||++|+.|++++...
T Consensus 534 ~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~~ 603 (625)
T TIGR02188 534 DIKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGE 603 (625)
T ss_pred CCCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccchHHHHHHHHcCC
Confidence 88889999999988765443 3689999999999999999998776 999999999999999998765
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=269.59 Aligned_cols=214 Identities=32% Similarity=0.540 Sum_probs=181.4
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++..++........... ......+..|. .+++ .++|+|+ ++++++.+ +.|||+++++.
T Consensus 318 ~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~---~~~~~~g~~g~-~~g~-~~~i~d~-~g~~~~~g--~~Gel~v~g~~ 389 (534)
T PRK05852 318 EFAAPVVCAFGMTEATHQVTTTQIEGIGQTE---NPVVSTGLVGR-STGA-QIRIVGS-DGLPLPAG--AVGEVWLRGTT 389 (534)
T ss_pred HhCCChhhccCccccchhhhcCCcccccccc---CcccccccCCC-CCCC-eEEEECC-CCCCCCCC--CceEEEEecCc
Confidence 4788999999999998755543211000000 00011123343 6888 9999998 88999887 88999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
+++||+++++.+.+.|.+|||+|||+++++++|++++.||.+|+|+.+|.++++.+||+.+.++++|.+++|++.++...
T Consensus 390 v~~gY~~~~~~t~~~~~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~ 469 (534)
T PRK05852 390 VVRGYLGDPTITAANFTDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLY 469 (534)
T ss_pred ccchhcCCcccchhhhcCCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCc
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHh
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKA 224 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~ 224 (236)
++.++++++..+....+.+++.++++++++++++|..+.+++ ||+|++||++|++|++++.+
T Consensus 470 g~~~~~~vv~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~ 532 (534)
T PRK05852 470 GEAVAAVIVPRESAPPTAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFGH 532 (534)
T ss_pred CceEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEhhhcCCCCCccccHHHHHHHhcc
Confidence 888889888876655788999999999999999999998877 99999999999999998854
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=267.92 Aligned_cols=208 Identities=36% Similarity=0.536 Sum_probs=185.2
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecC-
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN- 81 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~- 81 (236)
.+|+++++.||+||++.++..+... ....++|.+.+++ .++|+|+ ++++++.+ +.|||+++++
T Consensus 315 ~~~~~v~~~YG~tE~~~~~~~~~~~------------~~~~~vG~~~~~~-~~~i~d~-~~~~~~~g--~~Gei~v~~~~ 378 (542)
T PRK06155 315 RFGVDLLDGYGSTETNFVIAVTHGS------------QRPGSMGRLAPGF-EARVVDE-HDQELPDG--EPGELLLRADE 378 (542)
T ss_pred HcCCCEEeeecccccCccccCCCCC------------CCCCCcCccCCCc-eEEEECC-CCCCCCCC--CceEEEEecCC
Confidence 4688999999999998765442211 1235789999999 9999997 78888887 8899999998
Q ss_pred --CcchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccC
Q 046870 82 --TVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPD 159 (236)
Q Consensus 82 --~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 159 (236)
+++.||+++++.+...|.++||+|||+++++++|.+++.||.+|+|+++|.+++|.+||+.+.++++|.+++|+++++
T Consensus 379 ~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~ 458 (542)
T PRK06155 379 PFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPS 458 (542)
T ss_pred ccccchhhcCCHHHHHHhhcCCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecc
Confidence 689999999999998889999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 160 DHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 160 ~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
...++.+.+++++..+...+..+++++++++++.+++|..+.+++ ||+|++||++|++|++++...+
T Consensus 459 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~~~~~ 526 (542)
T PRK06155 459 ELGEDEVMAAVVLRDGTALEPVALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLREQGVTAD 526 (542)
T ss_pred cccCceEEEEEEECCCCCCCHHHHHHHHHhhCcCccCCcEEEEeccCCCCcccceeHHHHHhhccCCc
Confidence 777778888888887777788999999999999999999998776 9999999999999999886554
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=267.55 Aligned_cols=220 Identities=33% Similarity=0.582 Sum_probs=188.9
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|.++++.||+||+++.+..+...... .. ........++|.|.+++ .++|+|+ ++.+++.+ +.|||+++++.
T Consensus 303 ~~g~~~~~~YG~TE~~~~~~~~~~~~~~--~~-~~~~~~~~~~G~~~~g~-~~~i~d~-~~~~~~~g--~~Gel~i~~~~ 375 (528)
T PRK07470 303 KLGKVLVQYFGLGEVTGNITVLPPALHD--AE-DGPDARIGTCGFERTGM-EVQIQDD-EGRELPPG--ETGEICVIGPA 375 (528)
T ss_pred HhCcHHHHhCCCcccCCceeecchhhcc--cc-ccccceeeccCcccCCc-EEEEECC-CCCCCCCC--CceEEEEeCCc
Confidence 4678899999999998765443211100 00 00112345889999999 9999997 88888877 88999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.||+++++.+...|.++||+|||+++++++|+++++||.+|+|+++|++++|.+||+.+..++.|.+++|++.+++..
T Consensus 376 ~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~ 455 (528)
T PRK07470 376 VFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVW 455 (528)
T ss_pred cchhhcCCHHHHHhhhcCCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCccc
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999988877
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCCcc
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSIS 229 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~~~ 229 (236)
++.++++++..+....+..++.+++++.|+++++|..+++.+ ||+|++||++|++|+++++++..+.
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~~~ 523 (528)
T PRK07470 456 GEVGVAVCVARDGAPVDEAELLAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEERGLLD 523 (528)
T ss_pred CceeEEEEEECCCCCCCHHHHHHHHHHhhhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHhccccc
Confidence 788888888777656788899999999999999999988766 9999999999999999998876543
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=263.47 Aligned_cols=205 Identities=27% Similarity=0.462 Sum_probs=181.0
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
+.++++.||+||++.++...... ......++|.|++++ .++|+|+ +|.+++.+ +.|||+++++.++
T Consensus 279 ~~~~~~~YG~tE~~~~~~~~~~~----------~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~Gel~v~~~~~~ 344 (487)
T PRK07638 279 YAKLYEFYGASELSFVTALVDEE----------SERRPNSVGRPFHNV-QVRICNE-AGEEVQKG--EIGTVYVKSPQFF 344 (487)
T ss_pred CCeEEEEecCCccCceEEecccc----------cCCCCCCCCcccCCc-EEEEECC-CCCCCCCC--CCeEEEEecccce
Confidence 68899999999998654433211 112345899999999 9999998 88999877 8899999999999
Q ss_pred hhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCCc
Q 046870 85 NGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGE 164 (236)
Q Consensus 85 ~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~ 164 (236)
.||++++..+...+.+|||+|||+++++++|++++.||.+|+|+++|.++++.+||+.+.++|.|.+++|++.+++..++
T Consensus 345 ~gy~~~~~~~~~~~~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~ 424 (487)
T PRK07638 345 MGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGE 424 (487)
T ss_pred eeecCCHHHHhhhccCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCC
Confidence 99999998888777899999999999999999999999999999999999999999999999999999999998887778
Q ss_pred eeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCC
Q 046870 165 TPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGS 227 (236)
Q Consensus 165 ~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~ 227 (236)
.+++++.. ....+++.+++.+.++++++|..+++++ ||+|++||++|++|++++.+.+.
T Consensus 425 ~~~~~v~~----~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~~ 484 (487)
T PRK07638 425 KPVAIIKG----SATKQQLKSFCLQRLSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQEK 484 (487)
T ss_pred eeEEEEEC----CCCHHHHHHHHHHHhhcccCCcEEEEecccCCCCcccccHHHHHHHHhcccc
Confidence 88888764 2577899999999999999999998766 99999999999999999988764
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=265.19 Aligned_cols=208 Identities=35% Similarity=0.670 Sum_probs=181.4
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++.+...+.... ......++|+|++++ .++|+|+ ++++++.+ +.|||+++++.
T Consensus 335 ~~~~~~~~~YG~TE~~~~~~~~~~~~---------~~~~~~~~G~~~~~~-~v~i~d~-~~~~~~~g--~~Gel~v~g~~ 401 (547)
T PRK13295 335 ALGAKIVSAWGMTENGAVTLTKLDDP---------DERASTTDGCPLPGV-EVRVVDA-DGAPLPAG--QIGRLQVRGCS 401 (547)
T ss_pred HhCCCeEEeccCCCCCCeeeccCCCc---------chhccCccccccCCc-EEEEECC-CCCCCCCC--CCCeEEEEcCc
Confidence 46899999999999976543322110 011234789999999 9999998 78888877 88999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.||+++|+.+... .+|||+|||+++++++|++++.||.+|+|+++|.++++.+||..|.+++.|.+++|++.++...
T Consensus 402 ~~~gY~~~~~~t~~~-~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~ 480 (547)
T PRK13295 402 NFGGYLKRPQLNGTD-ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERL 480 (547)
T ss_pred ccccccCCccccccC-CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCC
Confidence 999999999888766 6889999999999999999999999999999999999999999999999999999999988877
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHh-cCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHh
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRD-RLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKA 224 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~ 224 (236)
++.+++++++.+....+.+++.+++.+ .++++++|..+.+++ ||+|.+||++|++|++++.+
T Consensus 481 g~~~~~~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~sgK~~r~~L~~~~~~ 544 (547)
T PRK13295 481 GERACAFVVPRPGQSLDFEEMVEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLREMLRG 544 (547)
T ss_pred CcEEEEEEEeCCCCCCCHHHHHHHHHhccCccccCCcEEEEeccCCCCCCccccHHHHHHHHhc
Confidence 888999999887655677899999986 799999999998777 99999999999999998865
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=265.64 Aligned_cols=219 Identities=36% Similarity=0.647 Sum_probs=182.3
Q ss_pred ccccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecC
Q 046870 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 2 ~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
+.+|+++++.||+||++..+..+.........+.........++|.|++++ .++|+|+ ++.+++.+.++.|||+++|+
T Consensus 315 ~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~-~~~i~d~-~~~~~~~~~~~~Gei~v~g~ 392 (539)
T PRK07008 315 DEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGV-DMKIVGD-DGRELPWDGKAFGDLQVRGP 392 (539)
T ss_pred HHhCCceecccccccccccceecccccccccCCchhhhhhcccCCccccce-EEEEECC-CCCccCCCCCcceEEEEeCC
Confidence 357899999999999987554432211111111111112245789999999 9999997 88888765446799999999
Q ss_pred CcchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCC
Q 046870 82 TVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 161 (236)
.++.||++++. ..+.+|||+|||+++++++|+++++||.+|+|+.+|.+++|.+||+.+..+|.|.++++++.++..
T Consensus 393 ~~~~gy~~~~~---~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~ 469 (539)
T PRK07008 393 WVIDRYFRGDA---SPLVDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPK 469 (539)
T ss_pred ccchhhcCChh---hhhcCCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCch
Confidence 99999999884 334589999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 162 WGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
.++.++++|+..++...+.+++.+++++++++|+.|..+.+++ ||+|++||++|++|++++.+.
T Consensus 470 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~~~~~~ 534 (539)
T PRK07008 470 WDERPLLVVVKRPGAEVTREELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRDY 534 (539)
T ss_pred hccceEEEEEeCCCCccCHHHHHHHHHhhcccccCCeEEEEecCCCCCCccceeHHHHHHHHHhh
Confidence 7788888888777666778899999999999999999998776 999999999999999988764
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=262.50 Aligned_cols=211 Identities=33% Similarity=0.469 Sum_probs=187.5
Q ss_pred cccC-eeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEec-
Q 046870 3 ELGF-TLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRG- 80 (236)
Q Consensus 3 ~~g~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~- 80 (236)
.+|. +|++.||+||+|+..+.+..... ...+++.+.|.+++ .+.|.|+ +|+.++.+. +.|+|+++.
T Consensus 382 ~~~~~pv~e~~~qtEtG~~~i~~~~g~~---------p~~pg~~~~p~~g~-~v~i~de-~g~~~~~~~-~~G~l~~~~~ 449 (626)
T KOG1175|consen 382 VTGLDPIYETYGQTETGGICITPKPGKL---------PIKPGSAGKPFPGY-DVQILDE-NGNELPPST-GNGELRLKPP 449 (626)
T ss_pred hcCccchhhceeeeccCceeeeccCCCC---------CcCccccCCCCCCc-ceEEECC-CCCCcCCCC-ceeEEEEeCC
Confidence 4555 69999999999988777654331 24567899999999 9999998 999999876 779999998
Q ss_pred -C-CcchhhcCCchhhhc-ccC--CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEE
Q 046870 81 -N-TVMNGYLKNLKATQD-AFD--GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVV 155 (236)
Q Consensus 81 -~-~~~~~y~~~~~~~~~-~~~--~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 155 (236)
| +++++||+|++.... .|. .|+|.|||.+++|++|+++++||.||+|+++|+++++.+||+++..||.|.|++|+
T Consensus 450 ~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvV 529 (626)
T KOG1175|consen 450 WPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVV 529 (626)
T ss_pred CCccccccccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeee
Confidence 4 889999999984333 344 88999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 156 GRPDDHWGETPCAFVKLKDGCVANG---EEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
+.+++..++.+.+||++.++..... ++|..++++.+.++..|+.|.+++ ||+|.+||+.|+.|++.+...
T Consensus 530 g~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~ 603 (626)
T KOG1175|consen 530 GSPDPIKGEVVLAFVVLKSGSHDPEQLTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASGK 603 (626)
T ss_pred cCCCCCCCeEEEEEEEEcCCCCChHHHHHHHHHHHHhhcCcccccceeEecCCCCccccchhHHHHHHHHhccC
Confidence 9999999999999999999855443 788999999999999999999987 999999999999999999887
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=269.41 Aligned_cols=213 Identities=27% Similarity=0.376 Sum_probs=178.8
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecC-
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN- 81 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~- 81 (236)
.+|+++++.||+||++..++....... .......++|.|++++ .++|+|+++|++++.+ +.|||+++++
T Consensus 378 ~~~~~v~~~YG~TE~~~~~~~~~~~~~-------~~~~~~~~~G~p~~g~-~~~i~d~~~g~~~~~g--~~Gel~i~gp~ 447 (629)
T PRK10524 378 ALGVPVIDNYWQTETGWPILAIARGVE-------DRPTRLGSPGVPMYGY-NVKLLNEVTGEPCGPN--EKGVLVIEGPL 447 (629)
T ss_pred hcCCCeEeccccccccchhhcCCCCcc-------cCcCCCCCcccCcCCc-eEEEEeCCCCCCCCCC--CcEEEEEcCCC
Confidence 468899999999999753332211100 0012345799999999 9999997688888877 8899999997
Q ss_pred --CcchhhcCCchhhhccc----CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEE
Q 046870 82 --TVMNGYLKNLKATQDAF----DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVV 155 (236)
Q Consensus 82 --~~~~~y~~~~~~~~~~~----~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 155 (236)
.++.+||++++.+...+ .++||+|||+++++++|+++|+||.||+||++|++++|.+||+.|.++|.|.+++|+
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vv 527 (629)
T PRK10524 448 PPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVV 527 (629)
T ss_pred ChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEE
Confidence 47789999988776542 468999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCceeEEEEEeCCCCCCC--------HHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 156 GRPDDHWGETPCAFVKLKDGCVAN--------GEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~~~~~~~--------~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
+.+++..++.+++++++++....+ .++|.+++++++++++.|..+++++ ||+|++||++|++|++++...
T Consensus 528 g~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 606 (629)
T PRK10524 528 GVKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQAIAEGR 606 (629)
T ss_pred ccccCCCCeEEEEEEEECCCCccccccchHHHHHHHHHHHHhhcCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC
Confidence 999888888999999987653221 3678899999999999999998877 999999999999999987654
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=266.82 Aligned_cols=210 Identities=37% Similarity=0.570 Sum_probs=185.6
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCC-CcccCCCCCceeEEEEecC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVT-MKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~-~~~~~~~~~~~Gel~v~~~ 81 (236)
.++.++++.||+||+++++....... .....++|.|++++ .++|+|+++ +.+++.+ +.|||+++++
T Consensus 359 ~~~~~i~~~YG~TE~~~~~~~~~~~~----------~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~~g--~~Gel~v~~~ 425 (573)
T PRK05605 359 LTGGLLVEGYGLTETSPIIVGNPMSD----------DRRPGYVGVPFPDT-EVRIVDPEDPDETMPDG--EEGELLVRGP 425 (573)
T ss_pred HhCCCeecccccchhchhhhcCCccc----------CCcCCccccCCCCC-EEEEEcCCCCCccCCCC--CeeEEEEecC
Confidence 35788999999999987655432211 11235789999999 999999855 5777776 8899999999
Q ss_pred CcchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCC
Q 046870 82 TVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 161 (236)
.++.||++++..+...|.+|||+|||+++++++|.+++.||.+|+++.+|++++|.+||+.+.+++.|.++++++.++..
T Consensus 426 ~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~ 505 (573)
T PRK05605 426 QVFKGYWNRPEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPRED 505 (573)
T ss_pred chhhhhcCChhHhhhcccCCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEEeeeccc
Confidence 99999999999999988889999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 162 WGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
.++.+++++++.++...+..++.+++++.++.+++|..+++.+ ||+|.+||++|++|++++.+.
T Consensus 506 ~~~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~GKi~r~~L~~~~~~~ 570 (573)
T PRK05605 506 GSEEVVAAVVLEPGAALDPEGLRAYCREHLTRYKVPRRFYHVDELPRDQLGKVRRREVREELLEK 570 (573)
T ss_pred CCeEEEEEEEECCCCCCCHHHHHHHHHHhCccccCCcEEEEeccCCCCCcccccHHHHHHHHHHH
Confidence 7889999999887766788999999999999999999998776 999999999999999998764
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=264.86 Aligned_cols=218 Identities=37% Similarity=0.648 Sum_probs=188.9
Q ss_pred cccC-eeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecC
Q 046870 3 ELGF-TLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 3 ~~g~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
.++. ++++.||+||++.+++.+..... ......++|.|++++ .++|+|++++++++.+ +.|||+|+++
T Consensus 338 ~~~~~~l~~~YG~tE~~~~~~~~~~~~~--------~~~~~~~vG~p~~~~-~v~i~d~~~~~~~~~g--~~GEl~v~g~ 406 (559)
T PRK08315 338 KMHMSEVTIAYGMTETSPVSTQTRTDDP--------LEKRVTTVGRALPHL-EVKIVDPETGETVPRG--EQGELCTRGY 406 (559)
T ss_pred HcCCcceeEEEcccccccceeecCcccc--------hhhccCCCCccCCCc-EEEEEcCccCCcCCCC--CceEEEEECc
Confidence 3454 49999999999865544322111 012345899999999 9999998669999887 8899999999
Q ss_pred CcchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 82 TVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
+++.||+++|..+...+ .++||+|||+++++++|.++++||.+|+|+++|+++++.+||+.+..++.|.+++|++.+++
T Consensus 407 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~ 486 (559)
T PRK08315 407 SVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDE 486 (559)
T ss_pred hhhhhhcCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCC
Confidence 99999999999988877 68899999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCCcccc
Q 046870 161 HWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSISKK 231 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~~~~~ 231 (236)
..++.++++|+..+....+..++.+++.+.++.|++|..+++++ ||+|.+||++|.+|++++..+...+++
T Consensus 487 ~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GK~~r~~L~~~~~~~~~~~~~ 558 (559)
T PRK08315 487 KYGEEVCAWIILRPGATLTEEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEELGLQAA 558 (559)
T ss_pred CCCeEEEEEEEeCCCCCCCHHHHHHHHHhhcccccCCcEEEEcccCCCCCCCceeHHHHHHHHHhhhchhhc
Confidence 76778888888877666778899999999999999999998877 999999999999999999888776654
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=264.35 Aligned_cols=226 Identities=65% Similarity=1.134 Sum_probs=188.5
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||+++.+..+.....+...+.........+.|.+.+....+.|+|++++.+++.+.++.|||++++++
T Consensus 318 ~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~ 397 (545)
T PRK08162 318 EIGFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNI 397 (545)
T ss_pred HhCCceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCc
Confidence 35789999999999976655543332222222111122234567776655468888876788887643357999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.||+++++.+...|.+|||+|||+++++++|.++++||.+|+|+++|.++++.+||..|..++.|.++++++.++...
T Consensus 398 ~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~ 477 (545)
T PRK08162 398 VMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKW 477 (545)
T ss_pred chhhhcCChhhhHHHhhCCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987777
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcccCCCCCCcccHHHHHHHHHhcCCc
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKAMGSI 228 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~lP~t~~GKi~R~~l~~~~~~~~~~ 228 (236)
++.+++++++.++...+.+++.+.+++.++++++|..+.+.+||+|++||++|+.|++++.++.+.
T Consensus 478 ~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~~iP~t~~gK~~r~~l~~~~~~l~~~ 543 (545)
T PRK08162 478 GEVPCAFVELKDGASATEEEIIAHCREHLAGFKVPKAVVFGELPKTSTGKIQKFVLREQAKSLKAI 543 (545)
T ss_pred CceEEEEEEeCCCCCCCHHHHHHHHHHhcccccCCcEEEecccCCCCCcCCcHHHHHHHHhhhhhh
Confidence 788999998887666678899999999999999999988777999999999999999998887653
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=265.72 Aligned_cols=213 Identities=34% Similarity=0.534 Sum_probs=183.9
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
|+++++.||+||++.++..+....... ......++|.|++++ +++|+|++++.++|.+ +.|||+++|++++
T Consensus 329 ~~~~~~~YG~tE~~~~~~~~~~~~~~~------~~~~~~~vG~~~~~~-~v~i~d~~~~~~~p~g--~~Gel~v~g~~~~ 399 (546)
T PLN02330 329 GVQVQEAYGLTEHSCITLTHGDPEKGH------GIAKKNSVGFILPNL-EVKFIDPDTGRSLPKN--TPGELCVRSQCVM 399 (546)
T ss_pred CCeEEecccccccccceecCCCccccc------cccccCccccccCCc-EEEEEeCCCCccCCCC--CceEEEEecchhh
Confidence 789999999999975543321110000 011234789999999 9999997688888887 8899999999999
Q ss_pred hhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCC
Q 046870 85 NGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWG 163 (236)
Q Consensus 85 ~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 163 (236)
.||++++..+...+ .+|||+|||+++++++|.++++||.+|+|+++|+++++.+||..+.+++.|.+++|++.++...+
T Consensus 400 ~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g 479 (546)
T PLN02330 400 QGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAG 479 (546)
T ss_pred hhhccCccchhhhccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccC
Confidence 99999998888766 47999999999999999999999999999999999999999999999999999999999888888
Q ss_pred ceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 164 ETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 164 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
+.+.++|++.+....+.+++.+++++.++.++.|..+.+++ ||+|++||++|++|++++...+
T Consensus 480 ~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~~~~~~ 543 (546)
T PLN02330 480 EIPAACVVINPKAKESEEDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLSIN 543 (546)
T ss_pred ceeEEEEEECCCCCCCHHHHHHHHHHhcccccCceEEEEeccCCCCCCcceeHHHHHHHHHhhh
Confidence 88999998887656678899999999999999999887666 9999999999999999997764
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=265.66 Aligned_cols=202 Identities=24% Similarity=0.323 Sum_probs=164.6
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
++++++.||+||++.++....... .....++|.|++++ ++.|+|++++.+++.| +.|||+++|++++
T Consensus 325 ~~~i~~~YG~TE~~~~~~~~~~~~----------~~~~~~vG~p~~g~-~v~i~d~~~~~~~~~g--~~Gel~v~g~~~~ 391 (539)
T PRK06334 325 HIQLRQGYGTTECSPVITINTVNS----------PKHESCVGMPIRGM-DVLIVSEETKVPVSSG--ETGLVLTRGTSLF 391 (539)
T ss_pred CCeEEecccccccCceEEeccCCC----------CCCCCcCceecCCC-EEEEEcCCCCccCCCC--ceEEEEEecCccc
Confidence 588999999999976544322110 01234689999999 9999997678889887 8899999999999
Q ss_pred hhhcCCchhhhccc--CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcce------EEEEe
Q 046870 85 NGYLKNLKATQDAF--DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLE------AAVVG 156 (236)
Q Consensus 85 ~~y~~~~~~~~~~~--~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~------~~v~~ 156 (236)
.|||++|+.+.... .++||+|||+++++++|+++++||.+|+||++|++|+|.+||+.|.+||.|.+ +++++
T Consensus 392 ~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~ 471 (539)
T PRK06334 392 SGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCG 471 (539)
T ss_pred ccccCCcccccceeeCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEc
Confidence 99999988654322 36799999999999999999999999999999999999999999999999987 67777
Q ss_pred ccCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhc-CCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 157 RPDDHWGETPCAFVKLKDGCVANGEEIINYCRDR-LPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 157 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
.+++. ..++++++.. .+.+++.+++.+. ++.|+.|..+.+++ ||+|++|||+|++|+++...+
T Consensus 472 ~~~~~--~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 536 (539)
T PRK06334 472 LPGEK--VRLCLFTTFP----TSISEVNDILKNSKTSSILKISYHHQVESIPMLGTGKPDYCSLNALAKSL 536 (539)
T ss_pred CCCCc--eEEEEEEecc----CChHHHHHHHHhcCCcccccchheeeecccccccCCcccHHHHHHHHHHh
Confidence 76432 2344444422 3567888888886 78899999988776 999999999999999987664
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=269.18 Aligned_cols=206 Identities=20% Similarity=0.252 Sum_probs=173.4
Q ss_pred CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecC--Cc
Q 046870 6 FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN--TV 83 (236)
Q Consensus 6 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~--~~ 83 (236)
+.+.+.||+||++++........ ....+++|.|.+++ ++.|+|+ +|++++ + +.|||+++++ ++
T Consensus 412 ~~~~~~yG~TE~~~~~~~~~~~~----------~~~~g~~g~p~~g~-~v~ivd~-~g~~~~-g--~~GEl~v~gp~p~~ 476 (652)
T TIGR01217 412 VWLASISGGTDICSCFAGANPTL----------PVHIGEIQAPGLGT-AVQSWDP-EGKPVT-G--EVGELVCTNPMPSM 476 (652)
T ss_pred ceEEeccCHHHHhccccCCCCCC----------CCcCCccCCCcCCC-ceEEECC-CCCCCC-C--CccEEEEecCCCcc
Confidence 46788999999854433221100 11234689999999 9999998 888884 4 8899999996 68
Q ss_pred chhhcCCchhhh---cccC--CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEecc
Q 046870 84 MNGYLKNLKATQ---DAFD--GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRP 158 (236)
Q Consensus 84 ~~~y~~~~~~~~---~~~~--~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 158 (236)
+.|||++++.+. ..+. +|||+|||++++|+||+|+|+||.||+|+++|++|+|.+||+.|.+||.|.+++|++++
T Consensus 477 ~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~ 556 (652)
T TIGR01217 477 PIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQE 556 (652)
T ss_pred ccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeee
Confidence 899999998653 2232 68999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 159 DDHWGETPCAFVKLKDGCVANG---EEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 159 ~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
++..++.++++|++.++...+. ++|.++++++|+++++|..+.+++ ||+|++|||+|+.|++++....
T Consensus 557 ~~~~ge~~~afVv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~r~~Lr~~~~~~~ 628 (652)
T TIGR01217 557 QPDGGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQGTP 628 (652)
T ss_pred cCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccChHHHHHHHHcCCC
Confidence 9888999999999987654443 589999999999999999998887 9999999999999999976543
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=264.03 Aligned_cols=211 Identities=32% Similarity=0.501 Sum_probs=182.5
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
+..+++.||+||++.+++.+...... . ......++|+|++++ .++|+|++++.+++.+ +.|||+++|+.++
T Consensus 324 ~~~~~~~YG~tE~~~~~~~~~~~~~~-~-----~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~Gel~v~g~~~~ 394 (537)
T PLN02246 324 NAVLGQGYGMTEAGPVLAMCLAFAKE-P-----FPVKSGSCGTVVRNA-ELKIVDPETGASLPRN--QPGEICIRGPQIM 394 (537)
T ss_pred CCeEeccccccccCcccccccccCCC-C-----ccccCCccccccCCc-EEEEecCCCCCcCCCC--CceEEEEECCchh
Confidence 57799999999998655433211100 0 011235789999999 9999997688889887 8899999999999
Q ss_pred hhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCC
Q 046870 85 NGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWG 163 (236)
Q Consensus 85 ~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 163 (236)
.||+++++.+...+ .++||+|||+++++++|+++++||.+|+|+.+|.+|++.+||+.+.+++.|.+++|++.++...+
T Consensus 395 ~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~ 474 (537)
T PLN02246 395 KGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAG 474 (537)
T ss_pred ccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCC
Confidence 99999999998877 48999999999999999999999999999999999999999999999999999999998888778
Q ss_pred ceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHh
Q 046870 164 ETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKA 224 (236)
Q Consensus 164 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~ 224 (236)
+.++++++..++...+..++.+++++++++++.|..+.+++ ||+|++||++|++|++++.+
T Consensus 475 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~~~ 536 (537)
T PLN02246 475 EVPVAFVVRSNGSEITEDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLAA 536 (537)
T ss_pred ceeEEEEEeCCCCCCCHHHHHHHHHhhCcCccccceEEEeccCCCCCcchhhHHHHHHHHhc
Confidence 88899998887666778899999999999999999888766 99999999999999998753
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=265.22 Aligned_cols=215 Identities=35% Similarity=0.557 Sum_probs=188.8
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|.++++.||+||++.++....... .....++|.|++++ .++|++++++.+++.+ +.|||+++++.
T Consensus 346 ~~~~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~~G~~~~~~-~~~i~~~~~~~~~~~g--~~Gel~v~g~~ 412 (563)
T PRK06710 346 VTGGKLVEGYGLTESSPVTHSNFLWE----------KRVPGSIGVPWPDT-EAMIMSLETGEALPPG--EIGEIVVKGPQ 412 (563)
T ss_pred hhCCCEecccccccCccccccCcccc----------cccCCccCCCCCCC-eEEEEECCCCccCCCC--CceEEEEecCc
Confidence 46889999999999987543321100 11234789999998 8999986688888887 78999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.||+++++.+...+.+|||+|||+++++++|.++++||.+|+|+++|.+++|.+||+.|.+++.|.+++|++.++...
T Consensus 413 ~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ 492 (563)
T PRK06710 413 IMKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYR 492 (563)
T ss_pred cchhhhCChHHHhhhcccCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCc
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999988877
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCCccc
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSISK 230 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~~~~ 230 (236)
++.++++++..+....+..++.+++++.++++++|..+.+++ ||+|++||++|++|+++.........
T Consensus 493 g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKi~r~~L~~~~~~~~~~~~ 561 (563)
T PRK06710 493 GETVKAFVVLKEGTECSEEELNQFARKYLAAYKVPKVYEFRDELPKTTVGKILRRVLIEEEKRKNEDEQ 561 (563)
T ss_pred CceeEEEEEECCCCCCCHHHHHHHHHHhcccccCCcEEEEcccCCCCccchhhHHHHHHHHhhcCcccc
Confidence 888999998887766778899999999999999999988777 99999999999999999887766543
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=272.08 Aligned_cols=201 Identities=24% Similarity=0.362 Sum_probs=173.1
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
++++++.||+||++..+..+... . ....++|+|++++ .++|+|+ ++++++.+ +.|||+|+|+.++
T Consensus 286 ~~~~~~~YG~tE~~~~~~~~~~~-~----------~~~~~iG~p~~~~-~v~i~d~-~g~~~~~g--~~GEl~i~g~~v~ 350 (705)
T PRK06060 286 GIPILDGIGSTEVGQTFVSNRVD-E----------WRLGTLGRVLPPY-EIRVVAP-DGTTAGPG--VEGDLWVRGPAIA 350 (705)
T ss_pred CCceEeeeeccccCceEEeccCC-C----------CCcCcccccCCCc-EEEEECC-CCCCCCCC--CceEEEEccchhh
Confidence 48899999999997544322111 0 1235789999999 9999998 78888887 8899999999999
Q ss_pred hhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCCc
Q 046870 85 NGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGE 164 (236)
Q Consensus 85 ~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~ 164 (236)
.||+++|+.+.. .++||+|||+++++++|+++++||.+|+||++|++|++.+||..|.+++.|.+++|++.++...++
T Consensus 351 ~GY~~~~~~~~~--~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~ 428 (705)
T PRK06060 351 KGYWNRPDSPVA--NEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGAS 428 (705)
T ss_pred hhhhCCCccccc--CCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCe
Confidence 999999886543 478999999999999999999999999999999999999999999999999999999998877778
Q ss_pred eeEEEEEeCCCCCCCH---HHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHH
Q 046870 165 TPCAFVKLKDGCVANG---EEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKA 222 (236)
Q Consensus 165 ~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~ 222 (236)
.++++++.......+. .++.++++++|+.|++|..+++++ ||+|.+||++|++|++++
T Consensus 429 ~~~a~vv~~~~~~~~~~~~~~i~~~l~~~L~~~~~P~~i~~v~~iP~t~~GKidr~~L~~~~ 490 (705)
T PRK06060 429 TLQAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQS 490 (705)
T ss_pred eEEEEEEeccccCcChHHHHHHHHHHHHhCCCCcCCcEEEEeecCCCCcchhhHHHHHHhhc
Confidence 8999988776543433 578889999999999999998776 999999999999999865
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=262.79 Aligned_cols=208 Identities=27% Similarity=0.363 Sum_probs=179.2
Q ss_pred ccccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCC----------C
Q 046870 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDA----------K 71 (236)
Q Consensus 2 ~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~----------~ 71 (236)
+.+|+++++.||+||++.++.... . ....++|.|+++ ++|++++++.+++.+. +
T Consensus 287 ~~~g~~l~~~YG~TE~~~~~~~~~-~------------~~~~~~g~~~~~---~~i~~~~~~~~~~~g~~~~~~~~~~~~ 350 (529)
T PRK07867 287 RRFGCVVVDGFGSTEGGVAITRTP-D------------TPPGALGPLPPG---VAIVDPDTGTECPPAEDADGRLLNADE 350 (529)
T ss_pred HHhCCcEEEeecccccccccccCC-C------------CCCCCcCCCCCC---EEEEECCCCCCCCCCccccccccccCC
Confidence 356899999999999975543211 0 112468999987 5677765777777762 1
Q ss_pred ceeEEEE-ecCCcchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcc
Q 046870 72 TIGEVMF-RGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVL 150 (236)
Q Consensus 72 ~~Gel~v-~~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~ 150 (236)
..|||++ ++++++.||+++++.+...+.+|||+|||+++++++|++++.||.+|+|+++|++++|.+||..|.++|.|.
T Consensus 351 ~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~ 430 (529)
T PRK07867 351 AIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDAT 430 (529)
T ss_pred cceEEEEecCCcccccccCChHhhhhhhcCCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCee
Confidence 1899998 999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhc--CCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 151 EAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDR--LPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 151 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~--l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
+++|++.+++..++.+++++++.++...+..++.+++.++ ++++++|..+.+++ ||+|++||++|++|+++....
T Consensus 431 ~~~V~g~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~~~ 508 (529)
T PRK07867 431 EVAVYAVPDPVVGDQVMAALVLAPGAKFDPDAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGVDC 508 (529)
T ss_pred EEEEEeccCCCCCeeEEEEEEECCCCCCCHHHHHHHHHhhccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcCCC
Confidence 9999999988888999999998877667888999999875 99999999998776 999999999999999987543
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=259.58 Aligned_cols=206 Identities=40% Similarity=0.653 Sum_probs=182.0
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
+.++++.||+||+++..+....... .....++|.|++++ .+++.++ ++.+++.+ +.|||+++|++++
T Consensus 290 ~~~v~~~YG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~~~~-~~~i~~~-~~~~~~~~--~~Gel~v~g~~~~ 356 (497)
T PRK06145 290 RARYIDAYGLTETCSGDTLMEAGRE---------IEKIGSTGRALAHV-EIRIADG-AGRWLPPN--MKGEICMRGPKVT 356 (497)
T ss_pred CCceEEeecCcccCCcceeccCccc---------cccCCCcccCCCCc-eEEEECC-CCCCCCCC--CceEEEEECcchh
Confidence 5789999999999875443221110 11234789999999 9999997 78888877 8899999999999
Q ss_pred hhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCCc
Q 046870 85 NGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGE 164 (236)
Q Consensus 85 ~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~ 164 (236)
.||+++++.+.+.|.++||+|||+++++++|+++++||.+|+|+++|+++++.+||..|.++++|.++++++.+++..++
T Consensus 357 ~Gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~ 436 (497)
T PRK06145 357 KGYWKDPEKTAEAFYGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGE 436 (497)
T ss_pred hhhcCChHHHHHHHhCCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCc
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999998887788
Q ss_pred eeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHH
Q 046870 165 TPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAK 223 (236)
Q Consensus 165 ~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~ 223 (236)
.+.+++++.+....+..++.++++++++++++|..+.+++ ||+|++||++|++|++++.
T Consensus 437 ~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 437 RITAVVVLNPGATLTLEALDRHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRDELN 496 (497)
T ss_pred eEEEEEEECCCCCCCHHHHHHHHHHhhhcCCCCCEEEEeccCCCCCcccccHHHHHHHhc
Confidence 8999998887666678999999999999999999998776 9999999999999999864
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=264.10 Aligned_cols=201 Identities=35% Similarity=0.579 Sum_probs=174.9
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|.++++.||+||++.++..+.. .......++|+|.+++ .++|+|+ ++++++.+ +.|||+++++.
T Consensus 335 ~~~~~i~~~YG~TE~~~~~~~~~~----------~~~~~~~~vG~p~~~~-~~~i~d~-~~~~~~~g--~~GEl~v~g~~ 400 (537)
T PRK13382 335 QFGDVIYNNYNATEAGMIATATPA----------DLRAAPDTAGRPAEGT-EIRILDQ-DFREVPTG--EVGTIFVRNDT 400 (537)
T ss_pred HcCCcEEecccccccCcceecChh----------HhccCCCCccccCcCc-EEEEECC-CCCCCCCC--CeeEEEEEcCC
Confidence 468889999999999865443221 1112345899999999 9999998 88998877 88999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.||+ ++.+. .+.+|||+|||+++++++|++++.||.+|+|+.+|+++++.+||..|.++++|.++++++.++...
T Consensus 401 ~~~gY~--~~~~~-~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~ 477 (537)
T PRK13382 401 QFDGYT--SGSTK-DFHDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQY 477 (537)
T ss_pred cccCcc--ccchh-hccCCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCcccc
Confidence 999998 44443 345899999999999999999999999999999999999999999999999999999999998877
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHH
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLRE 220 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~ 220 (236)
++.+++++++.++.....+++.+++++.++.+++|..+.+++ ||+|++||++|++|++
T Consensus 478 g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 478 GQRLAAFVVLKPGASATPETLKQHVRDNLANYKVPRDIVVLDELPRGATGKILRRELQA 536 (537)
T ss_pred CCEEEEEEEECCCCCCCHHHHHHHHHHhccCCCCCcEEEEeccCCCCCCCCCcHHhhCC
Confidence 888999999887666778899999999999999999998776 9999999999999864
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=261.02 Aligned_cols=209 Identities=39% Similarity=0.662 Sum_probs=186.5
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
+.++++.||+||++.+++.+.... ......++|+|++++ .+.|.|+ ++++++.+ +.|||++++++++
T Consensus 312 ~~~~~~~YG~tE~~~~~~~~~~~~---------~~~~~~~~G~~~~~~-~~~i~~~-~~~~~~~g--~~Gei~v~~~~~~ 378 (523)
T PRK08316 312 GLRFYNCYGQTEIAPLATVLGPEE---------HLRRPGSAGRPVLNV-ETRVVDD-DGNDVAPG--EVGEIVHRSPQLM 378 (523)
T ss_pred CCceeeeecccccCccccccCccc---------cccccCCcccCCCCc-EEEEEcC-CCCCCCCC--CcceEEEECCchh
Confidence 688999999999987665543211 112235789999999 9999997 78888887 8899999999999
Q ss_pred hhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCCc
Q 046870 85 NGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGE 164 (236)
Q Consensus 85 ~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~ 164 (236)
.+|+++++.+...|.++||+|||+++++++|.++++||.+|+|+++|.+++|.+||+.+.+++.|.++++++.+++..++
T Consensus 379 ~~y~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~ 458 (523)
T PRK08316 379 LGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIE 458 (523)
T ss_pred hhhcCCHHHHHHHhhCCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCC
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred eeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 165 TPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 165 ~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
.+++++++.+....+.+++.+.+++.++++++|..+.+++ +|+|++||++|++|++++++..
T Consensus 459 ~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~~~ 521 (523)
T PRK08316 459 AVTAVVVPKAGATVTEDELIAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRERYAGAF 521 (523)
T ss_pred eEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHHhhc
Confidence 9999999887666677899999999999999999998766 9999999999999999998654
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=258.86 Aligned_cols=209 Identities=33% Similarity=0.573 Sum_probs=183.9
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.++.++++.||+||++....... . ......++|.|++++ .++|+|++++++++.+ +.|||+++++.
T Consensus 292 ~~~~~~~~~YG~tE~~~~~~~~~-~----------~~~~~~~~G~~~~~~-~v~i~d~~~~~~~~~g--~~Gel~i~~~~ 357 (504)
T PRK07514 292 RTGHAILERYGMTETNMNTSNPY-D----------GERRAGTVGFPLPGV-SLRVTDPETGAELPPG--EIGMIEVKGPN 357 (504)
T ss_pred HhCCcceeecccccccccccCCc-c----------ccccCcccccCCCCc-EEEEEECCCCCCCCCC--CceEEEEecCC
Confidence 36788999999999975433211 0 011234789999999 9999996689999887 88999999999
Q ss_pred cchhhcCCchhhhcccC-CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCC
Q 046870 83 VMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 161 (236)
++.||+++++.+.+.|. ++||+|||+++++++|.++++||.+|+|+++|+++++.+||+.+.++++|.++++++.++..
T Consensus 358 ~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~ 437 (504)
T PRK07514 358 VFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPD 437 (504)
T ss_pred ccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCC
Confidence 99999999999988875 88999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 162 WGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
.++.++++++..+....+..++.+.+++.++++++|..+++++ +|+|++||++|++|++++.++
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~~~~ 502 (504)
T PRK07514 438 FGEGVTAVVVPKPGAALDEAAILAALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLREQYADL 502 (504)
T ss_pred cCceEEEEEEECCCCCCCHHHHHHHHHhhcccCCCCcEEEEeccCCCCCCcceeHHHHHHHHHhh
Confidence 7788899998887666688999999999999999999998776 999999999999999998765
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=263.56 Aligned_cols=213 Identities=31% Similarity=0.470 Sum_probs=173.8
Q ss_pred cCeeeecccccccCCCcceeecCCCC-CCC-----------ChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDW-NSL-----------PREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKT 72 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~-~~~-----------~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~ 72 (236)
|+++++.||+||+++.++........ ... ..........++|+|++++ +++|+++ + . ++
T Consensus 314 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~-~v~i~~~-~-----~--g~ 384 (563)
T PLN02860 314 NAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHV-ELKIGLD-E-----S--SR 384 (563)
T ss_pred CCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCc-EEEEecC-C-----C--Cc
Confidence 68999999999997654432211100 000 0000011223689999999 9999986 3 2 37
Q ss_pred eeEEEEecCCcchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcce
Q 046870 73 IGEVMFRGNTVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLE 151 (236)
Q Consensus 73 ~Gel~v~~~~~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~ 151 (236)
.|||+++|+.++.|||++|+.+...+ .+|||+|||+++++++|+++|+||.+|+|+++|++++|.+||+.+.++|.|.+
T Consensus 385 ~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~ 464 (563)
T PLN02860 385 VGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVAS 464 (563)
T ss_pred eeEEEEecCcccccccCCccccchhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcce
Confidence 89999999999999999999998876 48999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCceeEEEEEeCCCC--------------CCCHHHHHHHHHh-cCCCCCCccEEEE-cc-cCCCCCCccc
Q 046870 152 AAVVGRPDDHWGETPCAFVKLKDGC--------------VANGEEIINYCRD-RLPHYMAPRTVVF-ED-LPKTSTGKTQ 214 (236)
Q Consensus 152 ~~v~~~~~~~~~~~~~~~v~~~~~~--------------~~~~~~l~~~l~~-~l~~~~~p~~i~~-~~-lP~t~~GKi~ 214 (236)
++|++.++...++.++++|++.++. ..+.+++.+++.+ .|++|++|..+++ .+ ||+|++||++
T Consensus 465 ~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP~t~~GKi~ 544 (563)
T PLN02860 465 VVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIR 544 (563)
T ss_pred eEEEEEecCcCCceEEEEEEECCccccccccchhhcccccccHHHHHHHHhhCcccccccceEEEEEecCCCCCcccchh
Confidence 9999999888888999999987642 2455788888887 5999999998864 45 9999999999
Q ss_pred HHHHHHHHHhcC
Q 046870 215 KYVLREKAKAMG 226 (236)
Q Consensus 215 R~~l~~~~~~~~ 226 (236)
|++|++++.+..
T Consensus 545 r~~L~~~~~~~~ 556 (563)
T PLN02860 545 RDEVRREVLSHL 556 (563)
T ss_pred HHHHHHHHHHHH
Confidence 999999886654
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=260.70 Aligned_cols=217 Identities=36% Similarity=0.624 Sum_probs=188.8
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
+.++++.||+||++.+...+..... .....++|.|++++ .++|+|+ ++.+++.+ +.|||+++|+.++
T Consensus 316 ~~~l~~~YG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~g~~~~ 382 (542)
T PRK07786 316 EAQILAAFGQTEMSPVTCMLLGEDA---------IRKLGSVGKVIPTV-AARVVDE-NMNDVPVG--EVGEIVYRAPTLM 382 (542)
T ss_pred CCeEEeeecccccccceEecCcccc---------cccCCCccccCCCc-eEEEECC-CCCCCcCC--CceEEEEEChhhh
Confidence 6889999999999866443322111 12235789999999 9999997 78888877 8899999999999
Q ss_pred hhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCCc
Q 046870 85 NGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGE 164 (236)
Q Consensus 85 ~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~ 164 (236)
+||+++++.+...|.+|||+|||+++++++|.++++||.+|+|+++|.++++.+||+.|.+++.|.++++++.+.+..++
T Consensus 383 ~gy~~~~~~~~~~f~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~ 462 (542)
T PRK07786 383 SGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGE 462 (542)
T ss_pred hhhcCCHHHHHHHhhCCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988777778
Q ss_pred eeEEEEEeCCCC-CCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCCccccccc
Q 046870 165 TPCAFVKLKDGC-VANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSISKKGTS 234 (236)
Q Consensus 165 ~~~~~v~~~~~~-~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~~~~~~~~ 234 (236)
.+++++++.+.. ....+++.+.+.+++++++.|..+++++ ||+|++||++|++|++++++.+.......+
T Consensus 463 ~~~~~v~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~~~~~~~~~ 534 (542)
T PRK07786 463 VPVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGACVNVERRSAS 534 (542)
T ss_pred eEEEEEEECCCCCCCCHHHHHHHHHhhccCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhhhchhhcccc
Confidence 888888877543 3567899999999999999999998776 999999999999999999999876655543
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=260.20 Aligned_cols=210 Identities=35% Similarity=0.579 Sum_probs=181.8
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++......... .....++|.|++++ .++|+|++++.+++.+ ..|||++++++
T Consensus 328 ~~~~~~~~~YG~tE~~~~~~~~~~~-----------~~~~~~~G~~~~g~-~~~i~d~~~~~~~~~g--~~Gel~v~g~~ 393 (546)
T PRK08314 328 LTGLDYVEGYGLTETMAQTHSNPPD-----------RPKLQCLGIPTFGV-DARVIDPETLEELPPG--EVGEIVVHGPQ 393 (546)
T ss_pred HcCCcEEecccccccccceecCCCc-----------CCCCCccCcccCCe-EEEEEeCCCCcCCCCC--CceEEEEECCc
Confidence 4688999999999997654322110 01235799999999 9999997688999887 78999999999
Q ss_pred cchhhcCCchhhhcccC----CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEecc
Q 046870 83 VMNGYLKNLKATQDAFD----GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRP 158 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~----~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 158 (236)
++.||+++++.+.+.|. ++||+|||+++++++|.+++.||.+|+|+++|+++++.+||..+.+++.|.+++|++.+
T Consensus 394 ~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~ 473 (546)
T PRK08314 394 VFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATP 473 (546)
T ss_pred hhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCC
Confidence 99999999998887762 35999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCceeEEEEEeCCCC--CCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 159 DDHWGETPCAFVKLKDGC--VANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 159 ~~~~~~~~~~~v~~~~~~--~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
+...++.+++++++.+.. ..+.+++.+++++.++++++|..+.+++ ||+|++||++|++|++..++..
T Consensus 474 ~~~~~~~~~a~v~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~r~~L~~~~~~~~ 544 (546)
T PRK08314 474 DPRRGETVKAVVVLRPEARGKTTEEEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQEKARA 544 (546)
T ss_pred CcccCceeEEEEEECCCCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHhhhc
Confidence 887788899999987653 2456899999999999999999998776 9999999999999998777653
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=261.19 Aligned_cols=210 Identities=28% Similarity=0.397 Sum_probs=175.8
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEE-----------EeCCCCCcccCCCCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEID-----------IKDPVTMKSVPSDAK 71 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~-----------i~d~~~~~~~~~~~~ 71 (236)
.+|.++++.||+||++.++.... . ....++|+|++++ .+. ++|. +|+.++.+ +
T Consensus 286 ~~~~~l~~~YG~tE~~~~~~~~~---~----------~~~~~vG~p~~g~-~i~~~~~~~~~~~~~~d~-~g~~~~~~-~ 349 (540)
T PRK13388 286 RFGCQVEDGYGSSEGAVIVVREP---G----------TPPGSIGRGAPGV-AIYNPETLTECAVARFDA-HGALLNAD-E 349 (540)
T ss_pred HhCCceecccccccccceeecCC---C----------CCCCCCCCCCCCc-EEEcCCCCccccceeccC-ccccccCC-C
Confidence 46889999999999986543221 0 1124789999986 432 3333 44444322 2
Q ss_pred ceeEEEEe-cCCcchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcc
Q 046870 72 TIGEVMFR-GNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVL 150 (236)
Q Consensus 72 ~~Gel~v~-~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~ 150 (236)
.+|||+++ |++++.||+++|+.+.+.+.+|||+|||+++++++|.++++||.+|+|+++|++++|.+||..|.+++.|.
T Consensus 350 ~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~ 429 (540)
T PRK13388 350 AIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAIN 429 (540)
T ss_pred cceEEEEecCCcccccccCChHHHHHHhhcCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCce
Confidence 68999998 99999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhc--CCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCC
Q 046870 151 EAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDR--LPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGS 227 (236)
Q Consensus 151 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~--l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~ 227 (236)
+++|++.+++..++.+++++++.++...+..++.+++..+ ++++++|..+++++ ||+|++||++|++|+++..+...
T Consensus 430 ~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~l~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~~~~~ 509 (540)
T PRK13388 430 RVAVYAVPDERVGDQVMAALVLRDGATFDPDAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQGWATGD 509 (540)
T ss_pred EEEEEEccCCCCCceeEEEEEECCCCcCCHHHHHHHHHhhccCCcccCCcEEEEeccCCCCCcceeeHHhHHHhccCCCC
Confidence 9999999888778888888888877667778888888764 99999999998766 99999999999999998876654
Q ss_pred c
Q 046870 228 I 228 (236)
Q Consensus 228 ~ 228 (236)
.
T Consensus 510 ~ 510 (540)
T PRK13388 510 P 510 (540)
T ss_pred C
Confidence 3
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=261.85 Aligned_cols=216 Identities=25% Similarity=0.336 Sum_probs=174.0
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCc-ccCC---CCCceeEEEE
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMK-SVPS---DAKTIGEVMF 78 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~-~~~~---~~~~~Gel~v 78 (236)
.+|+++++.||+||++...+.+...... .......++|+|++++ +++|+|+ ++. +++. +.++.|||++
T Consensus 308 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~------~~~~~~~~~G~~~~g~-~v~i~d~-~~~~~~~~~~~~~~~~Gel~v 379 (540)
T PRK05857 308 ATGVRTAQVYGLSETGCTALCLPTDDGS------IVKIEAGAVGRPYPGV-DVYLAAT-DGIGPTAPGAGPSASFGTLWI 379 (540)
T ss_pred HhCCeeecccCCCcCCceeeeccccccc------ccccccCCcCcccCCc-EEEEECc-cccCccccccCCCCCcceEEE
Confidence 4688999999999997543322211000 0011235899999999 9999997 554 3332 2247899999
Q ss_pred ecCCcchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEecc
Q 046870 79 RGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRP 158 (236)
Q Consensus 79 ~~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 158 (236)
+++.++.||+++++.+.+.|.+|||+|||+++++++|++++.||.+|+|+++|++++|.+||..|..+|.|.+++|++.+
T Consensus 380 ~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~ 459 (540)
T PRK05857 380 KSPANMLGYWNNPERTAEVLIDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIP 459 (540)
T ss_pred eCcchhhhhhCCccchhhhcCCCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecC
Confidence 99999999999999999989999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCceeEEEEEeCCCCCC-CHHH----HHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 159 DDHWGETPCAFVKLKDGCVA-NGEE----IINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 159 ~~~~~~~~~~~v~~~~~~~~-~~~~----l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
+...++.+.++++..+.... ...+ +.+.+++.++++++|..+.+++ ||+|++||++|++|+++++...
T Consensus 460 ~~~~~~~~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~~~~ 533 (540)
T PRK05857 460 DEEFGALVGLAVVASAELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATADK 533 (540)
T ss_pred ccccccceEEEEEeCCCCChhhHHHHHHHHHHHHHhhhccccCCeEEEEhhcCCCCCCcceeHHHHHHhhhhcc
Confidence 87777778777776643211 1233 3445566789999999998877 9999999999999999988654
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=265.88 Aligned_cols=207 Identities=20% Similarity=0.241 Sum_probs=174.6
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecC--C
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN--T 82 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~--~ 82 (236)
++++++.||+||+++........ . ....+++|.|.+++ +++|+|+ +|+++ .+ +.|||+|+++ +
T Consensus 410 ~~~~~~~yG~TE~~~~~~~~~~~-----~-----~~~~g~~g~p~~g~-~~~ivd~-~g~~~-~g--~~GeL~v~gp~p~ 474 (655)
T PRK03584 410 DVWLASISGGTDICSCFVGGNPL-----L-----PVYRGEIQCRGLGM-AVEAWDE-DGRPV-VG--EVGELVCTKPFPS 474 (655)
T ss_pred CceEEeccChHhhhcccccCCCC-----C-----CcCCCccCCCcCCc-eeEEECC-CCCCC-CC--CceEEEEccCCCC
Confidence 47899999999986543322110 0 11235789999999 9999997 88888 44 7899999995 7
Q ss_pred cchhhcCCchhhh--c-cc--CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEec
Q 046870 83 VMNGYLKNLKATQ--D-AF--DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGR 157 (236)
Q Consensus 83 ~~~~y~~~~~~~~--~-~~--~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 157 (236)
++.|||++++.+. . .+ .+|||+|||++++|++|+|+|+||.||+||++|++|++.+||+.|.+||.|.+++|++.
T Consensus 475 ~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~ 554 (655)
T PRK03584 475 MPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQ 554 (655)
T ss_pred CcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEee
Confidence 8999999987543 1 12 26799999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 158 PDDHWGETPCAFVKLKDGCVANG---EEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 158 ~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
+++..++.++++|++.++...+. +++.++++++|+++++|..+++++ ||+|++|||+|+.|++++....
T Consensus 555 ~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~sGKi~r~~lr~~~~~~~ 627 (655)
T PRK03584 555 EWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLSGKKVELPVKKLLHGRP 627 (655)
T ss_pred EcCCCCEEEEEEEEECCCCCCcHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccchHHHHHHHHcCCC
Confidence 98888889999999887644443 578999999999999999998887 9999999999999999987553
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=245.75 Aligned_cols=211 Identities=35% Similarity=0.584 Sum_probs=188.1
Q ss_pred ccccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecC
Q 046870 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 2 ~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
+.+|+.+.+.|||.|.-...... + +.......+.|+|+....+++|+|. +|+++++| ++|+|..+||
T Consensus 327 ~~lgC~LQQVFGMAEGLvnyTRL--D--------Dp~E~i~~TQGrPlsP~DEvrvvD~-dg~pv~pG--E~G~LltRGP 393 (542)
T COG1021 327 AVLGCQLQQVFGMAEGLVNYTRL--D--------DPPEIIIHTQGRPLSPDDEVRVVDA-DGNPVAPG--EVGELLTRGP 393 (542)
T ss_pred hhhCchHHHHhhhhhhhhccccc--C--------CchHheeecCCCcCCCcceeEEecC-CCCCCCCC--CcceeeecCC
Confidence 35799999999999983322211 1 1122455689999999999999998 99999998 9999999999
Q ss_pred CcchhhcCCchhhhcccC-CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 82 TVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
+.++|||+.|+.+.+.|. +|+|+|||+++++++|++.+.||.+|+|+..|++|..++||+.|..||.|.++++++.+++
T Consensus 394 YTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDe 473 (542)
T COG1021 394 YTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDE 473 (542)
T ss_pred eeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchh
Confidence 999999999999999995 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEEeCCCCCCCHHHHHHHHHhc-CCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 161 HWGETPCAFVKLKDGCVANGEEIINYCRDR-LPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
-.|++.+++|+.++.. ....+++++|++. +..|++|..|.+++ +|.|+.|||++++|++++....
T Consensus 474 lLGEksCAfiv~~~~~-~~~~qlr~~L~~~GlAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~~~ 540 (542)
T COG1021 474 LLGEKSCAFIVVKEPP-LRAAQLRRFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLASRL 540 (542)
T ss_pred hcCcceeEEEEecCCC-CCHHHHHHHHHHcchhhhcCCcceeecccCCCcccccccHHHHHHHhhhhc
Confidence 9999999999988653 6788999999885 78999999999887 9999999999999999887543
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=254.56 Aligned_cols=198 Identities=27% Similarity=0.425 Sum_probs=168.1
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++...+.... .+......++|+|.+++ +++|++ + +.|||+++++.
T Consensus 252 ~~~~~l~~~YG~TE~~~~~~~~~~---------~~~~~~~~~~G~~~p~~-~v~i~~---------g--~~Gel~v~g~~ 310 (452)
T PRK07445 252 QLQLRLAPTYGMTETASQIATLKP---------DDFLAGNNSSGQVLPHA-QITIPA---------N--QTGNITIQAQS 310 (452)
T ss_pred hcCCeEecCcchhhhcccccccCc---------hhhccCCCcCCccCCCC-eEEEcC---------C--CcceEEEeCCc
Confidence 357899999999999765433211 11111234789999999 888872 2 67999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.||++++.. .++||+|||+++++++|++++.||.||+|+++|++|+|.+||+.|.++|.|.+++|++.+++..
T Consensus 311 ~~~gY~~~~~~-----~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~ 385 (452)
T PRK07445 311 LALGYYPQILD-----SQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHW 385 (452)
T ss_pred cchhhcCCccC-----CCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCC
Confidence 99999986432 3789999999999999999999999999999999999999999999999999999999998888
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCC
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGS 227 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~ 227 (236)
++.++++++..+. ..+.+++.+++++++++|++|..+++++ ||+|++||++|++|++++.+...
T Consensus 386 g~~~~a~vv~~~~-~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 450 (452)
T PRK07445 386 GEVVTAIYVPKDP-SISLEELKTAIKDQLSPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQRLG 450 (452)
T ss_pred CcEEEEEEEeCCC-CCCHHHHHHHHHHhCCcccCCeEEEEecCCCCCCCcccCHHHHHHHHHHhhC
Confidence 8889999887654 3567899999999999999999998777 99999999999999999887653
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=262.34 Aligned_cols=223 Identities=66% Similarity=1.185 Sum_probs=182.5
Q ss_pred ccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCc
Q 046870 4 LGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTV 83 (236)
Q Consensus 4 ~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~ 83 (236)
.|+++++.||+||+++.+..+.....+...+.........+.|.++++...++|+|++++.+++.+.+++|||+++|+++
T Consensus 333 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~ 412 (567)
T PLN02479 333 KGFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMV 412 (567)
T ss_pred cCCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccch
Confidence 47899999999999655443332221111111111111235788888874488998657888876544679999999999
Q ss_pred chhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCC
Q 046870 84 MNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWG 163 (236)
Q Consensus 84 ~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 163 (236)
+.|||++|+.+.+.+.+|||+|||+++++++|+++++||.+|+|+++|+++++.+||..|..++.|.+++|++.++...+
T Consensus 413 ~~GY~~~~~~t~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~ 492 (567)
T PLN02479 413 MKGYLKNPKANEEAFANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWG 492 (567)
T ss_pred hhhhhcCcccccchhcCCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877777
Q ss_pred ceeEEEEEeCCCCC-----CCHHHHHHHHHhcCCCCCCccEEEEcccCCCCCCcccHHHHHHHHHhcC
Q 046870 164 ETPCAFVKLKDGCV-----ANGEEIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 164 ~~~~~~v~~~~~~~-----~~~~~l~~~l~~~l~~~~~p~~i~~~~lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
+.+++++++.++.. ...+++.+++++++++++.|..+.+.+||+|++||++|++|++.+....
T Consensus 493 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~~iP~t~~gKv~r~~L~~~~~~~~ 560 (567)
T PLN02479 493 ESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVFGPLPKTATGKIQKHVLRAKAKEMG 560 (567)
T ss_pred ceeEEEEEecCcccccchhhhHHHHHHHHHhhcccccCCceEEeccCCCCCccCeeHHHHHHHHHhhC
Confidence 88999998876532 2346889999999999999999888669999999999999999877754
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=259.11 Aligned_cols=214 Identities=35% Similarity=0.558 Sum_probs=186.4
Q ss_pred ccccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecC
Q 046870 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 2 ~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
+.+|..+++.||+||++.++..+....... .......++|+|++++ .++|+|+ ++++++.+ +.|||+++++
T Consensus 303 ~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~-----~~~~~~~~~G~p~~g~-~v~i~~~-~~~~~~~g--~~Gel~v~~~ 373 (524)
T PRK06188 303 ERFGPIFAQYYGQTEAPMVITYLRKRDHDP-----DDPKRLTSCGRPTPGL-RVALLDE-DGREVAQG--EVGEICVRGP 373 (524)
T ss_pred HHhCchhhheeCccccCCceeecCchhccc-----cccccCCccccccCCc-EEEEEcC-CCCCCCCC--CeeEEEEECc
Confidence 356788999999999976554433221100 0112345789999999 9999998 78988877 8899999999
Q ss_pred CcchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCC
Q 046870 82 TVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 161 (236)
.++.||++++..+...+.+|||+|||+++++++|.+++.||.+++|+++|++++|.+||+.|.+++.|.++++++.+++.
T Consensus 374 ~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~ 453 (524)
T PRK06188 374 LVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEK 453 (524)
T ss_pred chhhhhcCChHHhhhhhcCCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCC
Confidence 99999999999998888899999999999999999999999999999999999999999999999999999999988877
Q ss_pred CCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHh
Q 046870 162 WGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKA 224 (236)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~ 224 (236)
.++.+.+++++.+....+.+++.+++.+.++.++.|..+++++ ||+|++||++|++|++++.+
T Consensus 454 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~~~ 517 (524)
T PRK06188 454 WGEAVTAVVVLRPGAAVDAAELQAHVKERKGSVHAPKQVDFVDSLPLTALGKPDKKALRARYWE 517 (524)
T ss_pred cCceEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCccccccHHHHHHHHHh
Confidence 7888999999887666778899999999999999999998777 99999999999999999854
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=261.67 Aligned_cols=214 Identities=33% Similarity=0.535 Sum_probs=181.4
Q ss_pred ccCeeee-cccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 4 LGFTLTH-AYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 4 ~g~~i~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
+|..++. .||+||++...+........ . ........++|.|++++ .++|+|++++.+++.+ ++|||+++|++
T Consensus 351 ~g~~~~~~~YG~tE~~~~~~~~~~~~~~-~---~~~~~~~~~vG~p~~g~-~v~v~d~~~~~~~~~g--~~Gel~v~g~~ 423 (567)
T PRK06178 351 TGSVLAEAAWGMTETHTCDTFTAGFQDD-D---FDLLSQPVFVGLPVPGT-EFKICDFETGELLPLG--AEGEIVVRTPS 423 (567)
T ss_pred hCCcccccccccccccccceeccccccC-c---cccccCCcccccccCCc-EEEEEcCCCCCcCCCC--CceEEEEECCc
Confidence 4656664 79999997654432211100 0 00112345789999999 9999996689999887 88999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.||+++++.+...+.+|||+|||+++++++|+++++||.+|+|+.+|.++++.+||+.+..++.|.++++++.+++..
T Consensus 424 v~~gY~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~ 503 (567)
T PRK06178 424 LLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDK 503 (567)
T ss_pred ccccccCChhhhhhcccCCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCccc
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999988777
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
++.+++++++.+....+.+++.+.+++.++.+++|. +.+++ +|+|++||++|++|++++++.
T Consensus 504 g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~-i~~v~~iP~t~~GKv~r~~l~~~~~~~ 566 (567)
T PRK06178 504 GQVPVAFVQLKPGADLTAAALQAWCRENMAVYKVPE-IRIVDALPMTATGKVRKQDLQALAEEL 566 (567)
T ss_pred CcceEEEEEeCCCCcCCHHHHHHHHHhcCcccCCce-EEEeccCCCCCccceeHHHHHHHHHhh
Confidence 788999998887666788999999999999999997 55555 999999999999999998765
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=261.97 Aligned_cols=204 Identities=34% Similarity=0.618 Sum_probs=178.1
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++.++..+.... .....++|.|++++ .++|+|+ ++.+++.+ +.|||+++++.
T Consensus 356 ~~~~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~~G~p~~~~-~v~ivd~-~~~~~~~g--~~Gel~v~g~~ 421 (562)
T PRK12492 356 LTGCTIVEGYGLTETSPVASTNPYGE----------LARLGTVGIPVPGT-ALKVIDD-DGNELPLG--ERGELCIKGPQ 421 (562)
T ss_pred HhCCceeeccCccccCceeeecCCcc----------cccCCccceecCCC-EEEEECC-CCCCCCCC--CceEEEEeCCc
Confidence 36889999999999987654332111 11235789999999 9999998 88888877 88999999999
Q ss_pred cchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCC
Q 046870 83 VMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 161 (236)
++.|||++++.+.+.| .++||+|||+++++++|.+++.||.+|+|+++|+++++.+||..|.+++.|.++++++.++..
T Consensus 422 ~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~ 501 (562)
T PRK12492 422 VMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDER 501 (562)
T ss_pred cccccccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCC
Confidence 9999999999998887 479999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHH
Q 046870 162 WGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREK 221 (236)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~ 221 (236)
.++.+.++++.... ..+.+++.+++.++++.+++|..+.+++ ||+|++||++|++|+++
T Consensus 502 ~~~~~~~~v~~~~~-~~~~~~i~~~~~~~l~~~~~P~~i~~~~~~P~t~~GK~~r~~L~~~ 561 (562)
T PRK12492 502 SGEAVKLFVVARDP-GLSVEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELRDI 561 (562)
T ss_pred CCceEEEEEEeCCC-CCCHHHHHHHHHHhcccccCCcEEEEeccCCCCCCCceeHHHHHhh
Confidence 77888888876543 3567899999999999999999998776 99999999999999875
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=268.70 Aligned_cols=179 Identities=25% Similarity=0.356 Sum_probs=157.0
Q ss_pred ccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcchhhcCCchhhhcccC------------------CCeEe
Q 046870 43 ARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD------------------GGWFR 104 (236)
Q Consensus 43 ~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~------------------~g~~~ 104 (236)
.++|+|.++. .+.|+|++++++++.+ ++|||+++|++++.|||++++.+.+.|. +|||+
T Consensus 391 ~s~G~~~~~~-~~~ivd~~~g~~~~~g--e~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~ 467 (631)
T PRK07769 391 VSAGKVGVSE-WAVIVDPETASELPDG--QIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVR 467 (631)
T ss_pred EeCCCcCCCc-EEEEEcCCCCcCCCCC--CEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeee
Confidence 4799999999 9999997688999887 8999999999999999999999988763 48999
Q ss_pred ccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhc-CCCcce--EEEEeccC-------------------CCC
Q 046870 105 SGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFS-HPSVLE--AAVVGRPD-------------------DHW 162 (236)
Q Consensus 105 TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~--~~v~~~~~-------------------~~~ 162 (236)
|||+++++ +|+|+|+||.+|+||++|++|+|.+||..|.+ +|.|.+ ++++++++ +..
T Consensus 468 TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ 546 (631)
T PRK07769 468 TGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDT 546 (631)
T ss_pred ccccccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCC
Confidence 99999996 99999999999999999999999999999996 799987 88888887 456
Q ss_pred CceeEEEEEeCCC-CCCCHHHHHHHHHhcCCC-CC-CccEEEEc---ccCCCCCCcccHHHHHHHHHhc
Q 046870 163 GETPCAFVKLKDG-CVANGEEIINYCRDRLPH-YM-APRTVVFE---DLPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 163 ~~~~~~~v~~~~~-~~~~~~~l~~~l~~~l~~-~~-~p~~i~~~---~lP~t~~GKi~R~~l~~~~~~~ 225 (236)
++.+++++++.++ ...+..+|.+++++++.. +. .|+.+.++ +||+|++|||+|++|++++.+.
T Consensus 547 ge~~~a~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~~ 615 (631)
T PRK07769 547 SEQLVIVAERAPGAHKLDPQPIADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLDG 615 (631)
T ss_pred CccEEEEEEecCccccccHHHHHHHHHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHcC
Confidence 7889999998875 346778999999999985 55 48777665 3999999999999999987644
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=260.93 Aligned_cols=217 Identities=22% Similarity=0.272 Sum_probs=169.0
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCC--------CCcccCCCCCceeEE
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPV--------TMKSVPSDAKTIGEV 76 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~--------~~~~~~~~~~~~Gel 76 (236)
|+++++.||+||++++++...... ..............++|+|++++ +++|+|+. ++++++.+ ++|||
T Consensus 315 ~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~~~~~~~~~vG~~~~~~-~~~ivd~~~~~~~~~~~~~~~~~g--~~Gel 390 (552)
T PRK09274 315 DAEILTPYGATEALPISSIESREI-LFATRAATDNGAGICVGRPVDGV-EVRIIAISDAPIPEWDDALRLATG--EIGEI 390 (552)
T ss_pred CceEEccccccccceeEeecchhh-hccccccccCCCCcccCccCCCc-eEEEEeccccccccccccccCCCC--CeeEE
Confidence 579999999999986544322110 00000000001123689999999 99999852 35667666 89999
Q ss_pred EEecCCcchhhcCCchhhhccc---CCC--eEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcce
Q 046870 77 MFRGNTVMNGYLKNLKATQDAF---DGG--WFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLE 151 (236)
Q Consensus 77 ~v~~~~~~~~y~~~~~~~~~~~---~~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~ 151 (236)
+++|++++.|||++|+.+...+ .+| ||+|||+++++++|+|+++||.+|+|+++|.+++|.+||+.|.+||.|.+
T Consensus 391 ~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~ 470 (552)
T PRK09274 391 VVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKR 470 (552)
T ss_pred EEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcccce
Confidence 9999999999999999888765 256 99999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCC---CCCCccEEEEcc-cCCC--CCCcccHHHHHHHHHhc
Q 046870 152 AAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLP---HYMAPRTVVFED-LPKT--STGKTQKYVLREKAKAM 225 (236)
Q Consensus 152 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~---~~~~p~~i~~~~-lP~t--~~GKi~R~~l~~~~~~~ 225 (236)
+++++.+++ .++.++++|++.++...+..++.+.+++.+. .++.|..+.+++ ||+| ++|||+|++|++++.+.
T Consensus 471 ~~v~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~lP~t~~~~GKi~r~~L~~~~~~~ 549 (552)
T PRK09274 471 SALVGVGVP-GAQRPVLCVELEPGVACSKSALYQELRALAAAHPHTAGIERFLIHPSFPVDIRHNAKIFREKLAVWAAKQ 549 (552)
T ss_pred eEEEEeCCC-CCceEEEEEEccCccccchHHHhhhhHHHHHhcCCCcceeEEeccCCCCccccccccccHHHHHHHHHHh
Confidence 999998765 3567888888887655555556656655444 445667777776 9999 79999999999998765
Q ss_pred C
Q 046870 226 G 226 (236)
Q Consensus 226 ~ 226 (236)
.
T Consensus 550 ~ 550 (552)
T PRK09274 550 L 550 (552)
T ss_pred h
Confidence 4
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=280.73 Aligned_cols=217 Identities=26% Similarity=0.401 Sum_probs=181.8
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||+++++.....+......- ........++|+|.|++ +++|+|++++++++.+ +.|||+++|++
T Consensus 921 ~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~-~~~~~~~~~vG~p~~~~-~v~i~d~~~~~~~~~g--~~Gel~v~g~~ 996 (1146)
T PRK08633 921 KFGIRILEGYGATETSPVASVNLPDVLAADFK-RQTGSKEGSVGMPLPGV-AVRIVDPETFEELPPG--EDGLILIGGPQ 996 (1146)
T ss_pred HhCCCeecccccccCcceEEEecCcccccccc-cccCCCCCCccccCCCC-EEEEEcCCCCccCCCC--CceEEEEcCCC
Confidence 57899999999999987654432211100000 00012356899999999 9999998789999887 88999999999
Q ss_pred cchhhcCCchhhhcccCC----CeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCC--CcceEEEEe
Q 046870 83 VMNGYLKNLKATQDAFDG----GWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHP--SVLEAAVVG 156 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~----g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~--~v~~~~v~~ 156 (236)
++.||+++|+.+.+.+.+ +||+|||++++|+||.++++||.+|+||++|+++++.+||+.+.+++ .+.++++++
T Consensus 997 ~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~ 1076 (1146)
T PRK08633 997 VMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTA 1076 (1146)
T ss_pred ccccccCCccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEe
Confidence 999999999999888766 99999999999999999999999999999999999999999999998 466899999
Q ss_pred ccCCCCCceeEEEEEeCCCCCCCHHHHHHHHHh-cCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 157 RPDDHWGETPCAFVKLKDGCVANGEEIINYCRD-RLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 157 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
.+++..++.++++++.. ..+.+++.+.+.+ .+++++.|..+++++ +|+|++||++|++|+++.+++.
T Consensus 1077 ~~~~~~g~~~~~~v~~~---~~~~~~l~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~~~~~ 1145 (1146)
T PRK08633 1077 VPDEKKGEKLVVLHTCG---AEDVEELKRAIKESGLPNLWKPSRYFKVEALPLLGSGKLDLKGLKELALALL 1145 (1146)
T ss_pred ccCCCCCcEEEEEEecC---ccCHHHHHHHHHhcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHhc
Confidence 99888888888888763 2567888888875 699999999998776 9999999999999999987764
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=258.11 Aligned_cols=203 Identities=30% Similarity=0.537 Sum_probs=178.8
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEec--
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRG-- 80 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~-- 80 (236)
.+|+++++.||+||++..+....... .....++|.|++++ .++|+|+ ++.+++.+ +.|||++++
T Consensus 310 ~~~~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~~G~~~~g~-~~~i~d~-~~~~~~~g--~~Gel~v~g~~ 375 (517)
T PRK08008 310 RFGVRLLTSYGMTETIVGIIGDRPGD----------KRRWPSIGRPGFCY-EAEIRDD-HNRPLPAG--EIGEICIKGVP 375 (517)
T ss_pred HhCCeEEeeccccccccccccCCccc----------cccCCccccCCCCc-EEEEECC-CCCCCCCC--CcceEEEeCCC
Confidence 46889999999999976544332111 11235799999999 9999997 88888887 889999997
Q ss_pred -CCcchhhcCCchhhhcccC-CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEecc
Q 046870 81 -NTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRP 158 (236)
Q Consensus 81 -~~~~~~y~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 158 (236)
++++.||+++++.+.+.+. +|||+|||+++++++|.++++||.+|+|+.+|++++|.+||..+.+++.|.+++|++.+
T Consensus 376 ~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~ 455 (517)
T PRK08008 376 GKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIK 455 (517)
T ss_pred CcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccC
Confidence 5899999999999988874 89999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHH
Q 046870 159 DDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLR 219 (236)
Q Consensus 159 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~ 219 (236)
+...++.+.+++++.++...+.+++..+++++++++++|..+.+++ ||+|++||++|+.|+
T Consensus 456 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 456 DSIRDEAIKAFVVLNEGETLSEEEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517 (517)
T ss_pred CCCCCceEEEEEEECCCCCCCHHHHHHHHHhhcccccCCcEEEEeccCCCCCccceehhhcC
Confidence 8877788999999888766778899999999999999999998776 999999999999864
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=256.77 Aligned_cols=206 Identities=43% Similarity=0.726 Sum_probs=181.5
Q ss_pred cccC-eeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecC
Q 046870 3 ELGF-TLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 3 ~~g~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
.++. ++++.||+||+++++..+....... ....++|.|++++ .++|+|+ ++++++.+ +.|||+++++
T Consensus 304 ~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~--------~~~~~vG~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~ 371 (513)
T PRK07656 304 ELGVDIVLTGYGLSEASGVTTFNRLDDDRK--------TVAGTIGTAIAGV-ENKIVNE-LGEEVPVG--EVGELLVRGP 371 (513)
T ss_pred HcCCCceEeEEccccCCCceeecCcccccc--------ccCCCccccCCCc-EEEEECC-CCCCCCCC--CceEEEEEcc
Confidence 4677 8999999999987766554221110 1135799999999 9999997 88999877 7899999999
Q ss_pred CcchhhcCCchhhhcccC-CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 82 TVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
.++.||++++..+...+. +|||+|||+++++++|.++++||.+|+|+++|.++++.+||+.|.++++|.++++++.++.
T Consensus 372 ~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~ 451 (513)
T PRK07656 372 NVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDE 451 (513)
T ss_pred hhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCc
Confidence 999999999988888776 8999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHH
Q 046870 161 HWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLRE 220 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~ 220 (236)
..++.+.++++..+....+.+++.+++++.++++++|..+.+++ ||+|++||++|++|++
T Consensus 452 ~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 452 RLGEVGKAYVVLKPGAELTEEELIAYCREHLAKYKVPRSIEFLDELPKNATGKVLKRALRE 512 (513)
T ss_pred ccCceEEEEEEECCCCCCCHHHHHHHHHhhcccccCCCEEEEecCCCCCCccceeHHHHhc
Confidence 77888889998876566788999999999999999999998776 9999999999999875
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=257.32 Aligned_cols=213 Identities=31% Similarity=0.432 Sum_probs=181.3
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCcc-CCcceEEEeCCCCCcccCCCCCceeEEEEecCCc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPH-LGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTV 83 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~ 83 (236)
|+++++.||+||++++......... ......+.|.+. +++ .++|+|++++++++.+ +.|||+++|+++
T Consensus 319 ~~~~~~~YG~tE~~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~-~~~i~d~~~~~~~~~g--~~Gel~v~g~~~ 387 (540)
T PRK06164 319 GVPLTGLYGSSEVQALVALQPATDP--------VSVRIEGGGRPASPEA-RVRARDPQDGALLPDG--ESGEIEIRAPSL 387 (540)
T ss_pred CCceecceeeccccceeeccCCCCC--------CcceeccCccccCCCe-EEEEecCCCCcCCCCC--CeeEEEEecccc
Confidence 7889999999999875443321110 011223567775 666 8999997788888887 899999999999
Q ss_pred chhhcCCchhhhcccC-CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 84 MNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 84 ~~~y~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
+.||+++|+.+...|. ++||+|||+++++++|.+++.||.+|+|+++|++++|.+||+.|.+++.|.++++++.+. ..
T Consensus 388 ~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~-~~ 466 (540)
T PRK06164 388 MRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATR-DG 466 (540)
T ss_pred cccccCCchhhhhcccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCC-CC
Confidence 9999999999988874 789999999999999999999999999999999999999999999999999999999873 34
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCC---cccHHHHHHHHHhcCCcc
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTG---KTQKYVLREKAKAMGSIS 229 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~G---Ki~R~~l~~~~~~~~~~~ 229 (236)
++.+++++++.++...+.+++.++++++++++++|..+.+.+ +|+|.+| |++|++|+++++++....
T Consensus 467 ~~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~~~~~~~ 537 (540)
T PRK06164 467 KTVPVAFVIPTDGASPDEAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQARLAAE 537 (540)
T ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHhhcccCcCCcEEEEecCCCCCCCCccccccHHHHHHHHHHhhhhh
Confidence 567888888877666788999999999999999999988776 9999999 999999999988776543
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=254.46 Aligned_cols=204 Identities=38% Similarity=0.603 Sum_probs=175.2
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.++.++++.||+||++...+... .. .....++|+|++++ .++|+|+ ++.+++.+.+.+|||+++|+.
T Consensus 264 ~~~~~~~~~YG~tE~~~~~~~~~-~~----------~~~~~~vG~~~~g~-~~~i~d~-~~~~~~~~~~~~Gei~v~g~~ 330 (471)
T PRK07787 264 LTGHRPVERYGMTETLITLSTRA-DG----------ERRPGWVGLPLAGV-ETRLVDE-DGGPVPHDGETVGELQVRGPT 330 (471)
T ss_pred HcCCCeecccCccccCcceecCC-CC----------cccCCcccccCCCc-EEEEECC-CCCCCCCCCCCceEEEEECcc
Confidence 46889999999999975433221 10 11234799999999 9999998 788887432247999999999
Q ss_pred cchhhcCCchhhhcccC-CCeEeccceEEEecCCeEEEEccC-CCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 83 VMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRS-KDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
++.||+++++.+.+.|. +|||+|||+++++++|.++++||. +++++.+|+++++.+||+.|..++.|.+++|++.++.
T Consensus 331 ~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~ 410 (471)
T PRK07787 331 LFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDD 410 (471)
T ss_pred cchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEccccc
Confidence 99999999999988875 899999999999999999999996 8999999999999999999999999999999999887
Q ss_pred CCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHH
Q 046870 161 HWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREK 221 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~ 221 (236)
..++.++++++... ..+..++.+++++++++++.|..+.+++ ||+|.+||++|++|+++
T Consensus 411 ~~~~~~~a~v~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~~~~GKi~r~~L~~~ 470 (471)
T PRK07787 411 DLGQRIVAYVVGAD--DVAADELIDFVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQLLSE 470 (471)
T ss_pred ccCeEEEEEEEeCC--CCCHHHHHHHHHhhcccccCCcEEEEeccCCCCCCccccHHHhccC
Confidence 77888999888743 3678899999999999999999988776 99999999999999753
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=255.59 Aligned_cols=206 Identities=36% Similarity=0.669 Sum_probs=178.4
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++.......... ......++|+|++++ .++|.++ +.+++.+ +.|||++++++
T Consensus 276 ~~~~~~~~~YG~tE~~~~~~~~~~~~---------~~~~~~~vG~p~~~~-~~~i~~~--~~~~~~g--~~Gel~v~g~~ 341 (483)
T PRK03640 276 EKGIPVYQSYGMTETASQIVTLSPED---------ALTKLGSAGKPLFPC-ELKIEKD--GVVVPPF--EEGEIVVKGPN 341 (483)
T ss_pred HhCCCeeeeeccCcccccccccCccc---------ccccCCCcccccCCc-EEEEecC--CCcCCCC--CceEEEEECcc
Confidence 35789999999999976443332111 112345799999999 9999885 3677776 88999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.||+++++.+...|.++||+|||+++++++|.+++.||++|+++++|.++++.+||+.+.+++.|.++++++.+++..
T Consensus 342 ~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~ 421 (483)
T PRK03640 342 VTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKW 421 (483)
T ss_pred hhhhhcCCHHHHHHHHhcCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCccc
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999887776
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHh
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKA 224 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~ 224 (236)
++.++++++... ..+..++.+++++.++++++|..+++++ ||+|++||++|++|++++.+
T Consensus 422 ~~~~~~~~~~~~--~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 422 GQVPVAFVVKSG--EVTEEELRHFCEEKLAKYKVPKRFYFVEELPRNASGKLLRHELKQLVEE 482 (483)
T ss_pred CCceEEEEEeCC--CCCHHHHHHHHHHhccCCCCCcEEEEeCCCCCCCccceeHHHHHHHHhh
Confidence 777778777544 4778899999999999999999998776 99999999999999999875
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=256.97 Aligned_cols=209 Identities=38% Similarity=0.658 Sum_probs=183.3
Q ss_pred CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcch
Q 046870 6 FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMN 85 (236)
Q Consensus 6 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~ 85 (236)
.++++.||+||++.+...+..... ......++|.|++++ .++|+|+ ++.+++.+ +.|||+++++.++.
T Consensus 344 ~~i~~~YG~tE~~~~~~~~~~~~~--------~~~~~~~vG~p~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~g~~~~~ 411 (558)
T PRK12583 344 AEVQIAYGMTETSPVSLQTTAADD--------LERRVETVGRTQPHL-EVKVVDP-DGATVPRG--EIGELCTRGYSVMK 411 (558)
T ss_pred cceeccccccccccceeccCcccc--------cccccCCCCccCCCC-eEEEECC-CCCCCCCC--CeeEEEEEeCccch
Confidence 479999999999876554322111 112345899999999 9999998 58888877 88999999999999
Q ss_pred hhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCCc
Q 046870 86 GYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGE 164 (236)
Q Consensus 86 ~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~ 164 (236)
||++++..+...+ .++||+|||+++++++|.+++.||.+|+|+++|.++++.+||+.+..++.|.++++++.++...++
T Consensus 412 gy~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~ 491 (558)
T PRK12583 412 GYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGE 491 (558)
T ss_pred hhcCChHHHHhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCc
Confidence 9999999988877 689999999999999999999999999999999999999999999999999999999998877778
Q ss_pred eeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 165 TPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 165 ~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
.++++++..+....+..++...++++|+++++|..+.+++ ||+|++||++|++|+++..+..
T Consensus 492 ~~~~~v~~~~~~~~~~~~i~~~~~~~L~~~~~P~~i~~v~~lP~t~sGK~~r~~L~~~~~~~~ 554 (558)
T PRK12583 492 EIVAWVRLHPGHAASEEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMREISIEEL 554 (558)
T ss_pred EEEEEEEECCCCCCCHHHHHHHHHhhcccCcCCcEEEEeccCCCCCCCCccHHHHHHHHHhhc
Confidence 8899999887666778899999999999999999998776 9999999999999999987653
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=257.89 Aligned_cols=209 Identities=33% Similarity=0.549 Sum_probs=180.8
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCcc-CCcceEEEeCCCCCcccCCCCCceeEEEEecC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPH-LGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
.+|+++++.||+||++....... .. ......++|.|+ +++ .++|+|+ ++++++.+ +.|||+++|+
T Consensus 323 ~~g~~~~~~YG~tE~~~~~~~~~-~~---------~~~~~~~~G~p~~~~~-~v~i~d~-~~~~~~~g--~~Gel~v~g~ 388 (536)
T PRK10946 323 ELGCQLQQVFGMAEGLVNYTRLD-DS---------DERIFTTQGRPMSPDD-EVWVADA-DGNPLPQG--EVGRLMTRGP 388 (536)
T ss_pred hcCCeEEEeecccccceeeecCC-Cc---------cccccccCCcccCCCc-eEEEECC-CCCCCCCC--CccEEEEecC
Confidence 46899999999999753322111 10 112345799999 677 9999997 88888887 8999999999
Q ss_pred CcchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 82 TVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
.++.||+++++.+...| .++||+|||+++++++|+++++||.+|+|+++|.++++.+||+.|.++++|.++++++.++.
T Consensus 389 ~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~ 468 (536)
T PRK10946 389 YTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDE 468 (536)
T ss_pred ccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCc
Confidence 99999999999998887 48999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceeEEEEEeCCCCCCCHHHHHHHHHhc-CCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCC
Q 046870 161 HWGETPCAFVKLKDGCVANGEEIINYCRDR-LPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGS 227 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~ 227 (236)
..++.+++++++.+. .+..++.+.+++. +++|+.|..+.+.+ +|+|++||++|++|++++.++.+
T Consensus 469 ~~g~~~~a~vv~~~~--~~~~~l~~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~~~~ 535 (536)
T PRK10946 469 LMGEKSCAFLVVKEP--LKAVQLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRAS 535 (536)
T ss_pred ccCceEEEEEEeCCC--CCHHHHHHHHHhCCccccccCcEEEEeccCCCCCCCcccHHHHHHHHHhhcc
Confidence 778888898887764 7788999999875 99999999998766 99999999999999999887654
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=261.06 Aligned_cols=209 Identities=28% Similarity=0.381 Sum_probs=161.8
Q ss_pred eeeecccccccCCCcceeecCCCCCC--C--ChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 7 TLTHAYGLTETYGPGTVCVWKPDWNS--L--PREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 7 ~i~~~YG~TE~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
++++.||+||++..+........... . +.........++|+|++++ +++|+|++.+.+++.+ +.|||+++|++
T Consensus 305 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~-~v~i~d~~~~~~~~~g--~~GEl~v~g~~ 381 (525)
T PRK05851 305 AAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGM-EVRISPGDGAAGVAGR--EIGEIEIRGAS 381 (525)
T ss_pred hcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCc-EEEEECCCCCccCCCC--CeEEEEEecCc
Confidence 49999999999754433211100000 0 0000112345799999999 9999997444567776 88999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.|||++|+.+ .+|||+|||+++++ +|.|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++..
T Consensus 382 ~~~GY~~~~~~~----~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~ 456 (525)
T PRK05851 382 MMSGYLGQAPID----PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEG 456 (525)
T ss_pred hhhccccCCccC----CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCC
Confidence 999999998654 37899999999997 7999999999999999999999999999999999999999999987777
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCCCC--CCccEEEEcc---cCCCCCCcccHHHHHHHHHh
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRDRLPHY--MAPRTVVFED---LPKTSTGKTQKYVLREKAKA 224 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~--~~p~~i~~~~---lP~t~~GKi~R~~l~~~~~~ 224 (236)
++.+.+++..... ..+..++.+.+++.++.+ ++|..+.+++ ||+|++||++|++|++++++
T Consensus 457 ~~~~~~~v~~~~~-~~~~~~~~~~~~~~l~~~l~~~P~~~~~v~~~~lP~t~~GKi~r~~L~~~~~~ 522 (525)
T PRK05851 457 SARPGLVIAAEFR-GPDEAGARSEVVQRVASECGVVPSDVVFVAPGSLPRTSSGKLRRLAVKRSLEA 522 (525)
T ss_pred CCceeEEEEEEec-CcchHHHHHHHHHHHHHHhCCCccEEEEECCCCcCcCcchHHHHHHHHHHHHh
Confidence 7666666654321 134456666777766666 8999887664 99999999999999998865
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=254.41 Aligned_cols=216 Identities=40% Similarity=0.698 Sum_probs=188.4
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.||+++++.||+||+++++..+........ ......++|.|++++ .++|+|+ ++.+++.+.|+.|||+++++.
T Consensus 304 ~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~-----~~~~~~~~G~~~~~~-~~~i~~~-~~~~~~~~~g~~Gel~v~~~~ 376 (521)
T PRK06187 304 KFGIDLVQGYGMTETSPVVSVLPPEDQLPG-----QWTKRRSAGRPLPGV-EARIVDD-DGDELPPDGGEVGEIIVRGPW 376 (521)
T ss_pred HhCcchheeeccCccCcccccCCccccccc-----ccccCCccccccCCe-EEEEECC-CCCCCCCCCCCeeEEEEECcc
Confidence 358899999999999876665432211000 012345789999999 9999998 788888844589999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.+|+++++.+...+.++||+|||+++++++|.+++.||.+|+++++|.++++.+||+.+..+++|.++++++.+++..
T Consensus 377 ~~~~y~~~~~~~~~~~~~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~ 456 (521)
T PRK06187 377 LMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKW 456 (521)
T ss_pred hhhhhcCCHHHHHHHhhCCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCc
Confidence 99999999999999898999999999999999999999999999999999999999999999999999999999988777
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
++.+++++++.++...+.+++.+++++.++++++|..+++++ ||+|++||++|.+|++++++-
T Consensus 457 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~~ 520 (521)
T PRK06187 457 GERPVAVVVLKPGATLDAKELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAEG 520 (521)
T ss_pred CceEEEEEEECCCCCCCHHHHHHHHHHhccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhcC
Confidence 888999999887766788999999999999999999998776 999999999999999998763
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=257.18 Aligned_cols=203 Identities=33% Similarity=0.614 Sum_probs=176.0
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++.+....... . ......++|+|++++ .++|+++ ++++++.+ +.|||+++++.
T Consensus 333 ~~~~~~~~~YG~tE~~~~~~~~~~~-~--------~~~~~~~~G~~~~g~-~v~i~~~-~~~~~~~g--~~Gel~v~g~~ 399 (538)
T TIGR03208 333 LLGALIVSAWGMTENGAVTVTEPDD-A--------LEKASTTDGRPLPGV-EVKVIDA-NGAKLSQG--ETGRLLVRGCS 399 (538)
T ss_pred HcCCeEEeeeccCcCCCccccCccc-c--------hhhccCcccccCCCC-EEEEECC-CCCCCcCC--CCcEEEEecCc
Confidence 4688999999999997665432211 0 011234789999999 9999997 78888877 88999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.||+++|+.+.. ..+|||+|||+++++++|.++++||.+|+|+++|++++|.+||+.|..++.|.+++|++.++...
T Consensus 400 ~~~gy~~~~~~~~~-~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~ 478 (538)
T TIGR03208 400 NFGGYLKRPHLNST-DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERL 478 (538)
T ss_pred ccccccCCcccccc-cCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCC
Confidence 99999999987653 35899999999999999999999999999999999999999999999999999999999988877
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHh-cCCCCCCccEEEEcc-cCCCCCCcccHHHHH
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRD-RLPHYMAPRTVVFED-LPKTSTGKTQKYVLR 219 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~ 219 (236)
++.+.+++++.+....+..++.+.+.+ .++.+++|..+.+++ ||+|++||++|++|+
T Consensus 479 g~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~ 537 (538)
T TIGR03208 479 GERACAVVVPKPGCTLDFAAMVAFLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLR 537 (538)
T ss_pred CceEEEEEEECCCCCCCHHHHHHHHHhcchhhccCCcEEEEeccCCCCCccccchHhhc
Confidence 888999999887766788899999985 799999999998776 999999999999985
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=257.64 Aligned_cols=204 Identities=37% Similarity=0.622 Sum_probs=178.2
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++.++..+.... .....++|.|++++ .++|+|+ ++++++.+ +.|||++++++
T Consensus 350 ~~~~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~vG~p~~g~-~v~i~d~-~~~~~~~g--~~Gel~v~g~~ 415 (557)
T PRK07059 350 MTGCPITEGYGLSETSPVATCNPVDA----------TEFSGTIGLPLPST-EVSIRDD-DGNDLPLG--EPGEICIRGPQ 415 (557)
T ss_pred HhCCCeeeccccccccchhhcCCCCC----------CCcCCcccCccCCc-EEEEECC-CCCCCCCC--CceEEEEeCCc
Confidence 47899999999999987655432110 01235799999999 9999997 78888887 88999999999
Q ss_pred cchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCC
Q 046870 83 VMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 161 (236)
++.||+++++.+...+ .+|||+|||+++++++|.+++.||.+|+|+++|++++|.+||+.+.+++.|.++++++.++..
T Consensus 416 ~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~ 495 (557)
T PRK07059 416 VMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEH 495 (557)
T ss_pred cchhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCC
Confidence 9999999999998776 489999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHH
Q 046870 162 WGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREK 221 (236)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~ 221 (236)
.++.++++++... ...+.+++.+++.+.++.++.|..+.+++ +|+|.+||++|+.|+++
T Consensus 496 ~ge~~~~~v~~~~-~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~~P~t~~GK~~r~~L~~~ 555 (557)
T PRK07059 496 SGEAVKLFVVKKD-PALTEEDVKAFCKERLTNYKRPKFVEFRTELPKTNVGKILRRELRDG 555 (557)
T ss_pred CCeeEEEEEEeCC-CCCCHHHHHHHHHHhcccccCCcEEEEeccCCCCcccceeHHHHHhh
Confidence 7888888877654 24567899999999999999999998776 99999999999999865
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=252.14 Aligned_cols=209 Identities=30% Similarity=0.431 Sum_probs=181.8
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|..+++.||+||++.+++.+..+ ......++|.|++++ .++|+|+ ++++++.+ +.|||+++++.
T Consensus 294 ~~~~~~~~~YG~tE~~~~~~~~~~~----------~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~~ 359 (509)
T PRK12406 294 WWGPVIYEYYGSTESGAVTFATSED----------ALSHPGTVGKAAPGA-ELRFVDE-DGRPLPQG--EIGEIYSRIAG 359 (509)
T ss_pred HcCCcEEeeccccccCceEecCccc----------ccccCCCcCccCCCc-EEEEECC-CCCCCCCC--CceEEEEECCc
Confidence 4678899999999998754432111 112235789999999 9999997 78888877 88999999998
Q ss_pred cch-hhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCC
Q 046870 83 VMN-GYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161 (236)
Q Consensus 83 ~~~-~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 161 (236)
++. +|+++++.+...+.++||+|||+++++++|.+++.||.+|+|+++|.++++.+||..|.+++.|.++++++.++..
T Consensus 360 ~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~ 439 (509)
T PRK12406 360 NPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAE 439 (509)
T ss_pred cccccccCCchhcccccCCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccc
Confidence 764 8999999888888899999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 162 WGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
.++.+++++++.+....+.+++.+.+++.++++++|..+.+.+ ||+|.+||++|++|++++...
T Consensus 440 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~~ 504 (509)
T PRK12406 440 FGEALMAVVEPQPGATLDEADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLRDPYWAN 504 (509)
T ss_pred cCceeEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccchhHHHHHHHHHhh
Confidence 7788899998877655678999999999999999999998766 999999999999999887654
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=280.54 Aligned_cols=213 Identities=23% Similarity=0.311 Sum_probs=171.4
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCC-CCcccCCCCCceeEEEEecCCc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPV-TMKSVPSDAKTIGEVMFRGNTV 83 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~-~~~~~~~~~~~~Gel~v~~~~~ 83 (236)
+++++|.||+||++..++.....................++|+|++++ .+.|+|++ .+++++.| ++|||+|+|+.+
T Consensus 555 ~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~ivd~~~~~~~~~~G--~~GEL~i~G~~v 631 (1389)
T TIGR03443 555 NVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNV-QLLVVNRNDRTQTCGVG--EVGEIYVRAGGL 631 (1389)
T ss_pred CCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCC-EEEEECCccCCCcCCCC--CceEEEeccccc
Confidence 688999999999976555433211100000000011235789999999 99999973 34667776 899999999999
Q ss_pred chhhcCCchhhhccc-----------------------------CCCeEeccceEEEecCCeEEEEccCCCeEEEcceee
Q 046870 84 MNGYLKNLKATQDAF-----------------------------DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENI 134 (236)
Q Consensus 84 ~~~y~~~~~~~~~~~-----------------------------~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v 134 (236)
+.||+++|+.|.+.| .++||+|||++++++||.|+|+||.||+||++|++|
T Consensus 632 ~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI 711 (1389)
T TIGR03443 632 AEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRI 711 (1389)
T ss_pred chhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEeCcEEe
Confidence 999999999998876 257999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCcceEEEEeccCCCCCceeEEEEEeCCCC-C-------------------------CCHHHHHHHHH
Q 046870 135 STIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGC-V-------------------------ANGEEIINYCR 188 (236)
Q Consensus 135 ~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~-------------------------~~~~~l~~~l~ 188 (236)
+|.+||..|.++|.|.+++|+...+...+..+++++++.... . ...+++.++++
T Consensus 712 ~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 791 (1389)
T TIGR03443 712 ELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLK 791 (1389)
T ss_pred cHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHH
Confidence 999999999999999999998887776677888888866211 0 01367889999
Q ss_pred hcCCCCCCccEEEEcc-cCCCCCCcccHHHHHH
Q 046870 189 DRLPHYMAPRTVVFED-LPKTSTGKTQKYVLRE 220 (236)
Q Consensus 189 ~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~ 220 (236)
++|+.|++|..+++.+ ||+|++||++|++|+.
T Consensus 792 ~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~ 824 (1389)
T TIGR03443 792 KKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPF 824 (1389)
T ss_pred hhCCcccCCceEEEcccCCCCCCccccHhhcCC
Confidence 9999999999998776 9999999999999964
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=253.61 Aligned_cols=202 Identities=38% Similarity=0.543 Sum_probs=172.8
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|.++++.||+||+++++..... .......++|+|+++ .++|+|+ ++++++.| +.|||++++++
T Consensus 293 ~~~~~~~~~YG~tE~~~~~~~~~~----------~~~~~~~~~G~~~~g--~~~i~d~-~~~~~~~g--~~Gel~v~~~~ 357 (501)
T PRK13390 293 WLGPIVYEYYSSTEAHGMTFIDSP----------DWLAHPGSVGRSVLG--DLHICDD-DGNELPAG--RIGTVYFERDR 357 (501)
T ss_pred hcCCceeeeecccccCceEEecch----------hhccCCCCcCCcccc--eEEEECC-CCCCCCCC--CceEEEEecCC
Confidence 367889999999999764332111 011234578999998 4899997 88888877 89999999999
Q ss_pred cchhhcCCchhhhcccC---CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccC
Q 046870 83 VMNGYLKNLKATQDAFD---GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPD 159 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~---~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 159 (236)
++.||+++|+.+.+.+. ++|++|||+++++++|.+++.||.+|+|+++|++|+|.+||+.|.+++.|.++++++.++
T Consensus 358 ~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~ 437 (501)
T PRK13390 358 LPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPD 437 (501)
T ss_pred ccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccC
Confidence 99999999999887753 679999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCceeEEEEEeCCCCCCC---HHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHH
Q 046870 160 DHWGETPCAFVKLKDGCVAN---GEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLR 219 (236)
Q Consensus 160 ~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~ 219 (236)
...++.+++++++.+....+ .+++.++++++|+.+++|..+.+++ ||+|++||++|++|+
T Consensus 438 ~~~~e~~~~~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 438 PEMGEQVKAVIQLVEGIRGSDELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501 (501)
T ss_pred cccCceeEEEEEecCCCCcchhhHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccceehhhcC
Confidence 88888899988877653322 4688999999999999999998776 999999999999874
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=252.64 Aligned_cols=218 Identities=39% Similarity=0.657 Sum_probs=182.9
Q ss_pred ccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCc
Q 046870 4 LGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTV 83 (236)
Q Consensus 4 ~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~ 83 (236)
+|+++++.||+||++.+++.+......+..+.........++|.|.+++ ++.|+|+ ++..++.+.+..|||+++++.+
T Consensus 317 ~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~-~i~v~d~-~~~~~~~~~~~~Gel~i~g~~~ 394 (542)
T PRK06018 317 MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGV-EMKITDD-AGKELPWDGKTFGRLKVRGPAV 394 (542)
T ss_pred hCCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCc-EEEEECC-CCCCCCCCCCceeEEEEecCCc
Confidence 6889999999999987766543332222222222222345789999999 9999998 8888876544679999999999
Q ss_pred chhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCC
Q 046870 84 MNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWG 163 (236)
Q Consensus 84 ~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 163 (236)
+.||+++.. .....++||+|||+++++++|++++.||.+|+|+.+|.++++.+||..+.+++.|.++++++.+++..+
T Consensus 395 ~~gy~~~~~--~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~ 472 (542)
T PRK06018 395 AAAYYRVDG--EILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWD 472 (542)
T ss_pred chhhhcCcc--cEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcC
Confidence 999998421 112247899999999999999999999999999999999999999999999999999999999988778
Q ss_pred ceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 164 ETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 164 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
+.+.+++++.++...+.+++.++++++++.+++|..+.+++ ||+|++||++|++|++++.+.
T Consensus 473 ~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~~ 535 (542)
T PRK06018 473 ERPLLIVQLKPGETATREEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALREQFKDY 535 (542)
T ss_pred ceeEEEEEeCCCCCCCHHHHHHHHHhhCccccCCcEEEEeccCCCCCcchhhHHHHHHHHhcc
Confidence 88899988887766778899999999999999999998776 999999999999999998773
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=254.25 Aligned_cols=202 Identities=35% Similarity=0.574 Sum_probs=173.5
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccC-CcceEEEeCCCCCcccCCCCCceeEEEEecC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHL-GLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~-~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
.+|+++++.||+||++....... .. ......++|+|++ +. .+.|+|+ +|++++.+ +.|||+++|+
T Consensus 322 ~~g~~~~~~YG~tE~~~~~~~~~-~~---------~~~~~~~~G~~~~~~~-~v~i~d~-~g~~~~~g--~~Gei~v~g~ 387 (527)
T TIGR02275 322 VFGCQLQQVFGMAEGLVNYTRLD-DP---------AEIIFTTQGRPMSPDD-EVRVVDD-HGNPVAPG--ETGMLLTRGP 387 (527)
T ss_pred HhCCeEEeeeccCccCccccCCC-Cc---------cccccccCCCCCCCCc-eEEEECC-CCCCCCCC--CceEEEecCC
Confidence 47899999999999754332211 00 0012347899995 55 8999997 88888877 8899999999
Q ss_pred CcchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 82 TVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
.++.||+++++.+...+ .+|||+|||+++++++|++++.||.+|+|+++|+++++.+||+.|.+++.|.++++++.++.
T Consensus 388 ~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~ 467 (527)
T TIGR02275 388 YTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDE 467 (527)
T ss_pred ccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCc
Confidence 99999999999998877 48999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceeEEEEEeCCCCCCCHHHHHHHHHhc-CCCCCCccEEEEcc-cCCCCCCcccHHHHH
Q 046870 161 HWGETPCAFVKLKDGCVANGEEIINYCRDR-LPHYMAPRTVVFED-LPKTSTGKTQKYVLR 219 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~ 219 (236)
..++.+++++++.+. ..+..++.+++++. ++.+++|..+.+++ ||+|++||++|++|+
T Consensus 468 ~~~~~~~a~vv~~~~-~~~~~~l~~~l~~~~l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 468 LLGEKSCAFIVVRDP-ALKAAQLRRFLRERGLAEYKLPDRVEFIDSLPLTAVGKIDKKALR 527 (527)
T ss_pred ccccEEEEEEEECCC-CCCHHHHHHHHHhCCCccccCCCEEEEeccCCCCCccceeHHhcC
Confidence 778889999887764 36788999999985 99999999998776 999999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=255.51 Aligned_cols=204 Identities=33% Similarity=0.523 Sum_probs=177.0
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++.++..+.... .....++|.|++++ .+.|+|+ ++.+++.+ +.|||+++++.
T Consensus 352 ~~~~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~vG~~~~~~-~v~i~d~-~~~~~~~g--~~Gel~v~~~~ 417 (560)
T PRK08751 352 VTGLTLVEAYGLTETSPAACINPLTL----------KEYNGSIGLPIPST-DACIKDD-AGTVLAIG--EIGELCIKGPQ 417 (560)
T ss_pred HhCCeEEEeeccccCCCceecccccc----------cccCCCcCccCCCc-eEEEECC-CCCCCCCC--CceEEEEecCc
Confidence 36789999999999987654332110 01234789999999 9999997 88888877 88999999999
Q ss_pred cchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCC
Q 046870 83 VMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 161 (236)
++.||+++++.+...+ .+|||+|||+++++++|+++++||.+|+|+++|.++++.+||..+..++.|.++++++.++..
T Consensus 418 ~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~ 497 (560)
T PRK08751 418 VMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEK 497 (560)
T ss_pred cchhhcCChhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCC
Confidence 9999999999988777 479999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHH
Q 046870 162 WGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREK 221 (236)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~ 221 (236)
.++.+.++++.. ....+..++.+.+.+++++++.|..+.+++ ||+|++||++|++|+++
T Consensus 498 ~ge~~~~~v~~~-~~~~~~~~l~~~~~~~l~~~~~P~~v~~v~~lP~t~~gKv~r~~L~~~ 557 (560)
T PRK08751 498 SGEIVKVVIVKK-DPALTAEDVKAHARANLTGYKQPRIIEFRKELPKTNVGKILRRELRDA 557 (560)
T ss_pred CCceEEEEEEcC-CCCCCHHHHHHHHHHhhhhccCCeEEEEhhhCCCCccccccHHHHHHh
Confidence 777777777654 334577899999999999999999998877 99999999999999876
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=251.12 Aligned_cols=208 Identities=25% Similarity=0.305 Sum_probs=171.4
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
++++++.||+||++.++.......... ......++|.+.+++ ++.|+++ ++.+++.+ +.|||+++|++++
T Consensus 284 ~~~~~~~yG~tE~~~~~~~~~~~~~~~------~~~~~~~vg~~~~~~-~~~i~~~-~~~~~~~g--~~Gel~v~g~~~~ 353 (502)
T TIGR01734 284 KATIYNTYGPTEATVAVTSVKITQEIL------DQYPRLPIGFAKPDM-NLFIMDE-EGEPLPEG--EKGEIVIVGPSVS 353 (502)
T ss_pred CcEEEeCccCCcceEEEEEEEcccccc------ccCCccccccccCCC-EEEEECC-CCCCCCCC--CeeEEEEcccccc
Confidence 689999999999975444332111100 011234689999999 9999998 78888877 8899999999999
Q ss_pred hhhcCCchhhhcccC----CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEecc-C
Q 046870 85 NGYLKNLKATQDAFD----GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRP-D 159 (236)
Q Consensus 85 ~~y~~~~~~~~~~~~----~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~-~ 159 (236)
.||+++++.+...|. .+||+|||+++++++ +|+++||.+|+|+++|++|++.+||+.+.+++.|.++++++.. .
T Consensus 354 ~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~ 432 (502)
T TIGR01734 354 KGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNK 432 (502)
T ss_pred ccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcC
Confidence 999999998887652 359999999999966 9999999999999999999999999999999999999999865 4
Q ss_pred CCCCceeEEEEEeCCCCCCC----HHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHH
Q 046870 160 DHWGETPCAFVKLKDGCVAN----GEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAK 223 (236)
Q Consensus 160 ~~~~~~~~~~v~~~~~~~~~----~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~ 223 (236)
....+.++++++........ .+++.+.+++.+++++.|..+++++ ||+|++||++|++|++++.
T Consensus 433 ~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~~ 501 (502)
T TIGR01734 433 DHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEEVN 501 (502)
T ss_pred CCCceEEEEEEEecccccccchhhHHHHHHHHhhhChhhcCCcEEEEccccCCCCCCcccHHHHHHhhc
Confidence 44556788888776542222 2678899999999999999998877 9999999999999999864
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=254.58 Aligned_cols=217 Identities=35% Similarity=0.575 Sum_probs=177.8
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++.++......... ..........++|++.+++ +++|+++ +..++...+..|||+++|+.
T Consensus 321 ~~~~~~~~~YG~tE~~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~~~-~~~i~~~--g~~~~~~~~~~Gel~v~g~~ 394 (576)
T PRK05620 321 RYGVDVVHVWGMTETSPVGTVARPPSGV---SGEARWAYRVSQGRFPASL-EYRIVND--GQVMESTDRNEGEIQVRGNW 394 (576)
T ss_pred HhCCceeeeccccccccceeeeccCCcc---ccccccccccccCCcCCce-eEEEecC--CccccCCCCCceEEEEEcCc
Confidence 4688999999999998765443221110 0000001123689999998 9999985 66665443478999999999
Q ss_pred cchhhcCCchhh----h------------ccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhc
Q 046870 83 VMNGYLKNLKAT----Q------------DAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFS 145 (236)
Q Consensus 83 ~~~~y~~~~~~~----~------------~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 145 (236)
++.||+++++.+ . ..+ .+|||+|||+++++++|.+++.||.+|+|+.+|.++++.+||..|.+
T Consensus 395 ~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~ 474 (576)
T PRK05620 395 VTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMA 474 (576)
T ss_pred ccccccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhc
Confidence 999999999877 2 222 37899999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEeccCCCCCceeEEEEEeCCCCC---CCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHH
Q 046870 146 HPSVLEAAVVGRPDDHWGETPCAFVKLKDGCV---ANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREK 221 (236)
Q Consensus 146 ~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~ 221 (236)
+|.|.+++|++.++...++.+++++++.++.. ...++++++++++|+++++|..+.+++ ||+|++||++|++|+++
T Consensus 475 ~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~t~~GKv~r~~L~~~ 554 (576)
T PRK05620 475 APEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQH 554 (576)
T ss_pred CCCceEEEEEeccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCeEEEEeccCCCCCcccCcHHHHHHH
Confidence 99999999999998888888888888876533 346899999999999999999998776 99999999999999999
Q ss_pred HHhc
Q 046870 222 AKAM 225 (236)
Q Consensus 222 ~~~~ 225 (236)
+++.
T Consensus 555 ~~~~ 558 (576)
T PRK05620 555 LADG 558 (576)
T ss_pred HhcC
Confidence 9864
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=259.22 Aligned_cols=203 Identities=22% Similarity=0.379 Sum_probs=167.1
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++++.+..... .....++|+|++++ +++|+|. ++. + +.|||+++|++
T Consensus 502 ~~g~~l~~~YG~TE~~~~~~~~~~~-----------~~~~~svG~p~pg~-~~~i~d~-~~~----~--~~Gel~v~g~~ 562 (718)
T PRK08043 502 KFGLRILEGYGVTECAPVVSINVPM-----------AAKPGTVGRILPGM-DARLLSV-PGI----E--QGGRLQLKGPN 562 (718)
T ss_pred HcCCCeecccCcccccceEEecCCc-----------ccCCCCCCCcCCCC-eeEEecC-CCC----C--CceEEEEecCC
Confidence 5789999999999997654432110 01246899999999 9999986 432 2 45999999999
Q ss_pred cchhhcC--Cchh-------hhc-ccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceE
Q 046870 83 VMNGYLK--NLKA-------TQD-AFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEA 152 (236)
Q Consensus 83 ~~~~y~~--~~~~-------~~~-~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~ 152 (236)
++.|||+ +++. +.. .+.+|||+|||++++|++|+++++||.+|+|+++|++|+|.+||+.+.+++.+.++
T Consensus 563 v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~ 642 (718)
T PRK08043 563 IMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQH 642 (718)
T ss_pred ccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceE
Confidence 9999998 3442 221 23479999999999999999999999999999999999999999999999988888
Q ss_pred EEEeccCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhc-CCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCC
Q 046870 153 AVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDR-LPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGS 227 (236)
Q Consensus 153 ~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~ 227 (236)
++++.+++..++.+++++. +...+..++.++++++ ++.|++|..+.+++ ||+|++||++|++|++++.+.++
T Consensus 643 avv~~~~~~~ge~~v~~~~---~~~~~~~~l~~~~~~~~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 716 (718)
T PRK08043 643 ATAIKSDASKGEALVLFTT---DSELTREKLQQYAREHGVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDEPEQ 716 (718)
T ss_pred EEEEccCCCCCceEEEEEc---CcccCHHHHHHHHHhcCCCcccCCceEEEecccCcCCCCCcCHHHHHHHHhcccc
Confidence 8888888777887777664 2335778899999887 99999999998777 99999999999999999877554
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=252.73 Aligned_cols=211 Identities=37% Similarity=0.634 Sum_probs=180.8
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++++........ ......++|.|++++ .++++|+ ++.+++.+ +.|||+++|+.
T Consensus 324 ~~~~~l~~~YG~TE~~~~~~~~~~~~---------~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~g~~ 390 (547)
T PRK06087 324 QRGIKLLSVYGSTESSPHAVVNLDDP---------LSRFMHTDGYAAAGV-EIKVVDE-ARKTLPPG--CEGEEASRGPN 390 (547)
T ss_pred HcCCcEEEEecccccCCccccCCCcc---------hhhcCCcCCccCCCc-eEEEEcC-CCCCCcCC--CcceEEEeccc
Confidence 35889999999999987654322110 011234689999999 9999997 88888877 88999999999
Q ss_pred cchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCC
Q 046870 83 VMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 161 (236)
++.||+++++.+...+ .+|||+|||+++++++|.++++||.+|+|+.+|++++|.+||+.|..++.|.++++++.+++.
T Consensus 391 ~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~ 470 (547)
T PRK06087 391 VFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDER 470 (547)
T ss_pred ccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCC
Confidence 9999999999888776 479999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCceeEEEEEeCC-CCCCCHHHHHHHHH-hcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 162 WGETPCAFVKLKD-GCVANGEEIINYCR-DRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 162 ~~~~~~~~v~~~~-~~~~~~~~l~~~l~-~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
.++.++++++..+ ....+.+++.+++. +.++++++|..+.+++ ||+|++||++|++|++++.+..
T Consensus 471 ~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~~~ 538 (547)
T PRK06087 471 LGERSCAYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRRL 538 (547)
T ss_pred cCceEEEEEEECCCCCCCCHHHHHHHHHhccccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHHHHh
Confidence 7889999998775 34456788888876 5799999999998777 9999999999999998887653
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=261.34 Aligned_cols=209 Identities=22% Similarity=0.289 Sum_probs=162.9
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCC-CCCceeEEEEecC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPS-DAKTIGEVMFRGN 81 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~-~~~~~Gel~v~~~ 81 (236)
.+|+++++.||+||+++.++..... .....++|+|+|++ +++|+|.+++..... ..+..|||+++|+
T Consensus 399 ~~g~~~~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~pg~-~v~i~d~~~~~~~~~~~~~~~GEl~vrgp 466 (651)
T PLN02736 399 CFGGRVLEGYGMTETSCVISGMDEG-----------DNLSGHVGSPNPAC-EVKLVDVPEMNYTSEDQPYPRGEICVRGP 466 (651)
T ss_pred HhCCCeEEEechHHhchheeccCCC-----------CCCCCccCCccCce-EEEEEEccccCcccCCCCCCCceEEecCC
Confidence 4688999999999997654432211 01345799999999 999998533321111 1114599999999
Q ss_pred CcchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEE-cceeeCHHHHHHHHhcCCCcceEEEEeccC
Q 046870 82 TVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIIS-GGENISTIEVESVLFSHPSVLEAAVVGRPD 159 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 159 (236)
+++.|||++|+.|.+.| .+|||+|||+|++++||+|+|+||.+|+||+ +|++|+|.+||+.|..+|.|.+++|++.
T Consensus 467 ~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~-- 544 (651)
T PLN02736 467 IIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD-- 544 (651)
T ss_pred ccccccccCHHHHHhhhccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec--
Confidence 99999999999999888 4899999999999999999999999999996 7999999999999999999999999983
Q ss_pred CCCCceeEEEEEeCCCC--------CCCHH---------HHHHH----HH-----hcCCCCCCccEEEEcc-cC------
Q 046870 160 DHWGETPCAFVKLKDGC--------VANGE---------EIINY----CR-----DRLPHYMAPRTVVFED-LP------ 206 (236)
Q Consensus 160 ~~~~~~~~~~v~~~~~~--------~~~~~---------~l~~~----l~-----~~l~~~~~p~~i~~~~-lP------ 206 (236)
..++.++++|++.+.. ..+.. ++.+. +. ..|+.|+.|+.+++.+ .|
T Consensus 545 -~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 623 (651)
T PLN02736 545 -SLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGL 623 (651)
T ss_pred -CCCceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCc
Confidence 2456789999876531 11111 11111 11 2599999999998876 44
Q ss_pred CCCCCcccHHHHHHHHHhcC
Q 046870 207 KTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 207 ~t~~GKi~R~~l~~~~~~~~ 226 (236)
+|++||++|+++++.+++..
T Consensus 624 lT~~~Ki~R~~i~~~~~~~i 643 (651)
T PLN02736 624 LTPTFKVKRPQAKAYFAKAI 643 (651)
T ss_pred CChhhhhhHHHHHHHHHHHH
Confidence 79999999999999987653
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=252.24 Aligned_cols=208 Identities=36% Similarity=0.574 Sum_probs=180.9
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|.++++.||+||++..++.+.... .....++|.|++++ .++|+++ ++.+++.+ +.|||+++++.
T Consensus 348 ~~g~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~~G~~~~~~-~~~i~~~-~~~~~~~g--~~Gel~v~g~~ 413 (560)
T PRK08974 348 LTGQYLLEGYGLTECSPLVSVNPYDL----------DYYSGSIGLPVPST-EIKLVDD-DGNEVPPG--EPGELWVKGPQ 413 (560)
T ss_pred HhCCcEEeeecccccCceeeccCCCC----------cccCCccccCcCCC-EEEEECC-CCCCCCCC--CceEEEEecCC
Confidence 36889999999999987655443211 01234799999999 9999997 78888887 88999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.+|+++++.+...+.+|||+|||+++++++|.++++||.+|+|+++|.++++.+||+.|.+++.|.++++++.++...
T Consensus 414 ~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~ 493 (560)
T PRK08974 414 VMLGYWQRPEATDEVIKDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVS 493 (560)
T ss_pred cchhhcCChhhhhhhhhcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCc
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999988777
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
++.++++++... ...+.+++.+++.++++.++.|..+.+++ ||+|.+||++|++|+++..+.
T Consensus 494 g~~~~~~v~~~~-~~~~~~~l~~~l~~~l~~~~~P~~~~~~~~lP~t~~GK~~r~~l~~~~~~~ 556 (560)
T PRK08974 494 GEAVKIFVVKKD-PSLTEEELITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARAK 556 (560)
T ss_pred ceEEEEEEECCC-CCCCHHHHHHHHHhhcccccCCcEEEEhhhCCCCCCCcEeHHHHHHHHHhh
Confidence 777777776543 33567889999999999999999998776 999999999999999887653
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=238.43 Aligned_cols=184 Identities=31% Similarity=0.527 Sum_probs=161.5
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++.... ..|.|++++ ++++.+ |+|+++|+.
T Consensus 173 ~~~~~v~~~YG~TE~~~~~~---------------------~~G~~~~g~-~v~i~~--------------Gei~v~g~~ 216 (358)
T PRK07824 173 AAGINVVRTYGMSETSGGCV---------------------YDGVPLDGV-RVRVED--------------GRIALGGPT 216 (358)
T ss_pred hcCCcEEecccCCccCCCcC---------------------cCceeCCCC-EEEecC--------------CEEEEecCc
Confidence 35789999999999865321 248899998 888732 899999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.||++++..+. ...+|||+|||++++ ++|.+++.||.+|+|+++|++|+|.+||..|.++|.|.+++|++.+++..
T Consensus 217 ~~~gY~~~~~~~~-~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~ 294 (358)
T PRK07824 217 LAKGYRNPVDPDP-FAEPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRL 294 (358)
T ss_pred cccccCCCccccc-ccCCCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCC
Confidence 9999999876442 224789999999999 79999999999999999999999999999999999999999999988888
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHh
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKA 224 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~ 224 (236)
++.++++++.........+++.+++++.++.+++|..+.+++ ||+|++||++|++|++++.+
T Consensus 295 g~~~~a~v~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 295 GQRVVAAVVGDGGPAPTLEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAG 357 (358)
T ss_pred ceEEEEEEEeCCCCCcCHHHHHHHHHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhhc
Confidence 888999888776666788999999999999999999998777 99999999999999999865
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=257.67 Aligned_cols=178 Identities=24% Similarity=0.371 Sum_probs=153.2
Q ss_pred ccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcchhhcCCchhhhcccC-------------------CCeE
Q 046870 43 ARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-------------------GGWF 103 (236)
Q Consensus 43 ~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~-------------------~g~~ 103 (236)
.++|+|++++ ++.|+|++++++++.+ +.|||+++|++++.|||++|+.|.+.|. ++||
T Consensus 402 ~~~G~~~~g~-~v~ivd~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~ 478 (612)
T PRK12476 402 VSCGQVARSQ-WAVIVDPDTGAELPDG--EVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWL 478 (612)
T ss_pred EeCCCcCCCC-EEEEEeCCCCcCCCCC--CEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCee
Confidence 4789999999 9999998559999887 8999999999999999999999988763 2599
Q ss_pred eccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhc-CCCcce--EEEEeccCCCCCceeEEEEEeCCCC-CCC
Q 046870 104 RSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFS-HPSVLE--AAVVGRPDDHWGETPCAFVKLKDGC-VAN 179 (236)
Q Consensus 104 ~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~--~~v~~~~~~~~~~~~~~~v~~~~~~-~~~ 179 (236)
+|||+|+++ +|+|+|+||.+|+||++|++|+|.+||+.|.+ +|.|.+ +++++.+++. ++.+++++++.++. ..+
T Consensus 479 ~TGDlg~~~-dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~~~~ 556 (612)
T PRK12476 479 RTGDLGVYL-DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTSRAD 556 (612)
T ss_pred eccccceeE-CCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCccccc
Confidence 999999985 99999999999999999999999999999985 799998 6777777665 77888888887653 246
Q ss_pred HHHHHHHHHhcCC-CCCC-ccEEEEcc---cCCCCCCcccHHHHHHHHHhc
Q 046870 180 GEEIINYCRDRLP-HYMA-PRTVVFED---LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 180 ~~~l~~~l~~~l~-~~~~-p~~i~~~~---lP~t~~GKi~R~~l~~~~~~~ 225 (236)
.++|.+++++.+. .+++ |..+.+++ ||+|++|||+|++|++++.+.
T Consensus 557 ~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~~~ 607 (612)
T PRK12476 557 PAPAIDAIRAAVSRRHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYLDG 607 (612)
T ss_pred HHHHHHHHHHHHHHhhCCcceEEEEECCCCcCcCCchHHHHHHHHHHHHcC
Confidence 6788888888876 4777 57776653 999999999999999998654
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=249.15 Aligned_cols=200 Identities=29% Similarity=0.448 Sum_probs=173.3
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|.++++.||+||++..+..+... ......++|.|++++ .++|+|+ ++++++.+ +.|||+++++.
T Consensus 315 ~~g~~v~~~YG~tE~~~~~~~~~~~----------~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~g~~ 380 (516)
T PRK13383 315 TYGDILYNGYGSTEVGIGALATPAD----------LRDAPETVGKPVAGC-PVRILDR-NNRPVGPR--VTGRIFVGGEL 380 (516)
T ss_pred HcCchhhhcccccccccceeccccc----------cccCCCcccCCCCCc-EEEEECC-CCCCCCCC--CceEEEEecCc
Confidence 4788999999999998654432211 012235799999999 9999997 78888877 88999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.+|++.+. ..+.+|||+|||+++++++|++++.||.+|+|+++|.++++.+||+.|.+++.|.++++++.++...
T Consensus 381 ~~~~Y~~~~~---~~~~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~ 457 (516)
T PRK13383 381 AGTRYTDGGG---KAVVDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERF 457 (516)
T ss_pred ccccccCCch---hheecCceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEecccccc
Confidence 9999998754 2345899999999999999999999999999999999999999999999999999999999988877
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHH
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLR 219 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~ 219 (236)
++.+.++|++.+....+..++.+++++++++++.|..+.+++ ||+|++||++|++|+
T Consensus 458 g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 458 GHRLAAFVVLHPGSGVDAAQLRDYLKDRVSRFEQPRDINIVSSIPRNPTGKVLRKELP 515 (516)
T ss_pred CceEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEeCCCCCCCCCcCcHHHhC
Confidence 889999999887666677899999999999999999998776 999999999999874
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=247.62 Aligned_cols=208 Identities=36% Similarity=0.510 Sum_probs=178.7
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|.++++.||+||++.+++..... ......++|.|+ +. .++|+|+ ++.+++.+ +.|||+++++.
T Consensus 285 ~~~~~~~~~yG~tE~~~~~~~~~~~----------~~~~~~~~G~~~-~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~~ 349 (502)
T PRK08276 285 WWGPIIHEYYASSEGGGVTVITSED----------WLAHPGSVGKAV-LG-EVRILDE-DGNELPPG--EIGTVYFEMDG 349 (502)
T ss_pred HhCcHhhhhcccccccceeEecCcc----------ccccCCCcceec-cc-EEEEECC-CCCCCcCC--CceEEEEECCC
Confidence 3578899999999998754432211 011235789999 77 9999997 78888877 88999999999
Q ss_pred cchhhcCCchhhhcccC-CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCC
Q 046870 83 VMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 161 (236)
++.+|++++..+...+. ++||+|||+++++++|.+++.||.+|+++++|.++++.+||..+.+++.|.++++++..++.
T Consensus 350 ~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~ 429 (502)
T PRK08276 350 YPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEE 429 (502)
T ss_pred ccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcc
Confidence 99999999999988875 49999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCceeEEEEEeCCCCCCCH---HHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 162 WGETPCAFVKLKDGCVANG---EEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
.++.+.+++++.+....+. +++.+.+++++++++.|..+++++ ||+|++||++|++|++.+...
T Consensus 430 ~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 497 (502)
T PRK08276 430 MGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLRDRYWEG 497 (502)
T ss_pred cCceEEEEEEECCCCCCChhhHHHHHHHHHhhccCCCCCcEEEEecCCCCCcccchhHHHHHHHHHhh
Confidence 8889999999876543332 478899999999999999998777 999999999999999997654
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=248.08 Aligned_cols=202 Identities=27% Similarity=0.403 Sum_probs=174.6
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
+.++++.||+||++....... ........++|.|++++ .++|+++ ++.+++.+ +.|||+++|+.++
T Consensus 300 ~~~~~~~YG~tE~~~~~~~~~----------~~~~~~~~~vG~~~~~~-~~~i~~~-~~~~~~~~--~~Gel~v~g~~~~ 365 (515)
T TIGR03098 300 NARLFLMYGLTEAFRSTYLPP----------EEVDRRPDSIGKAIPNA-EVLVLRE-DGSECAPG--EEGELVHRGALVA 365 (515)
T ss_pred CCeEeeeeccccccceEeccc----------ccccCCCCCcceecCCC-EEEEECC-CCCCCCCC--CceEEEEcCchhh
Confidence 578999999999965332211 00112345899999999 9999997 88888776 8899999999999
Q ss_pred hhhcCCchhhhcccC------------CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceE
Q 046870 85 NGYLKNLKATQDAFD------------GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEA 152 (236)
Q Consensus 85 ~~y~~~~~~~~~~~~------------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~ 152 (236)
.||+++++.+...+. ++||+|||+++++++|.+++.||.+|+|+.+|.++++.+||+.+.+++.|.++
T Consensus 366 ~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~ 445 (515)
T TIGR03098 366 MGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEA 445 (515)
T ss_pred ccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEE
Confidence 999999887765442 35899999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHH
Q 046870 153 AVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLRE 220 (236)
Q Consensus 153 ~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~ 220 (236)
+|++.++...++.++++++.......+.+++.++++++++++++|..+++++ ||+|++||++|++|++
T Consensus 446 ~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 446 VAFGVPDPTLGQAIVLVVTPPGGEELDRAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAA 514 (515)
T ss_pred EEEeccCcccCceEEEEEEeCCCCCCCHHHHHHHHHhhCccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence 9999998888888999888776666788999999999999999999998776 9999999999999864
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=258.10 Aligned_cols=206 Identities=21% Similarity=0.322 Sum_probs=163.2
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCC--CcccCCCCCceeEEEEecCC
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVT--MKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~--~~~~~~~~~~~Gel~v~~~~ 82 (236)
++++++.||+||++++.+...... .....++|+|+|++ +++|+|.++ +.+++.+ +.|||+|+|++
T Consensus 411 ~~~i~~~YG~TE~~~~~~~~~~~~----------~~~~gsvG~p~pg~-evki~d~~~~~~~~~~~g--~~GEl~vrGp~ 477 (666)
T PLN02614 411 CCHVLQGYGLTESCAGTFVSLPDE----------LDMLGTVGPPVPNV-DIRLESVPEMEYDALAST--PRGEICIRGKT 477 (666)
T ss_pred CCCEEeeCchHhhhhheeeecccc----------CCcCCcccCcCCce-EEEEeeecccCcccCCCC--CCceEEEcCCc
Confidence 489999999999975433221110 11245899999999 999998323 4667666 88999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEE-cceeeCHHHHHHHHhcCCCcceEEEEeccCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIIS-GGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 161 (236)
++.|||++|+.|.+.|.+|||+|||+|++|++|+|+|+||.+|+||. +|++|+|.+||+.|.+||.|.+++|++.+...
T Consensus 478 v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~ 557 (666)
T PLN02614 478 LFSGYYKREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFES 557 (666)
T ss_pred ccccccCCHHHhhhhhccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcc
Confidence 99999999999999999999999999999999999999999999995 79999999999999999999999999976332
Q ss_pred CCceeEEEEEeCCCC----------CCCH----------HHHHHHH-----HhcCCCCCCccEEEEcc--cC-----CCC
Q 046870 162 WGETPCAFVKLKDGC----------VANG----------EEIINYC-----RDRLPHYMAPRTVVFED--LP-----KTS 209 (236)
Q Consensus 162 ~~~~~~~~v~~~~~~----------~~~~----------~~l~~~l-----~~~l~~~~~p~~i~~~~--lP-----~t~ 209 (236)
.++++|++.... ..+. +.+.+.+ ++.|+.+..++.+++.+ |- +|+
T Consensus 558 ---~l~alvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTp 634 (666)
T PLN02614 558 ---FLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTP 634 (666)
T ss_pred ---eEEEEEeCCHHHHHHHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCH
Confidence 378888765421 0011 1222322 34599999999998766 32 899
Q ss_pred CCcccHHHHHHHHHhcC
Q 046870 210 TGKTQKYVLREKAKAMG 226 (236)
Q Consensus 210 ~GKi~R~~l~~~~~~~~ 226 (236)
++|+.|..+++.|++.-
T Consensus 635 t~K~kR~~i~~~y~~~i 651 (666)
T PLN02614 635 TFKKKRPQLLKYYQSVI 651 (666)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 99999999999887653
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=243.81 Aligned_cols=193 Identities=27% Similarity=0.384 Sum_probs=168.7
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++......... ...++|.|++++ .++|.+ |||+++|+.
T Consensus 262 ~~g~~~~~~YG~tE~~~~~~~~~~~-------------~~~~~G~~~~~~-~~~i~~--------------gel~v~g~~ 313 (458)
T PRK09029 262 QQGIRCWCGYGLTEMASTVCAKRAD-------------GLAGVGSPLPGR-EVKLVD--------------GEIWLRGAS 313 (458)
T ss_pred HcCCcEeccccccccCcceeccCCC-------------CCCCCCCCCCCC-EEEEeC--------------CEEEEecCc
Confidence 3588999999999997543221110 123689999998 888764 899999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.||+++++.+.....+|||+|||+++++ +|.+++.||.+|+|+++|.+++|.+||+.|.+++.|.+++|++.++...
T Consensus 314 ~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ 392 (458)
T PRK09029 314 LALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEF 392 (458)
T ss_pred eeeeeecCccccccccCCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCccc
Confidence 999999998888766678999999999999 9999999999999999999999999999999999999999999998888
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
++.++++++... ..+.+++.+++++++++|++|..+.+.+ +|+|.+||++|+.|++++.+..
T Consensus 393 ~~~~~a~v~~~~--~~~~~~l~~~~~~~l~~~~~P~~~~~~~~~p~t~~gKi~r~~L~~~~~~~~ 455 (458)
T PRK09029 393 GQRPVAVVESDS--EAAVVNLAEWLQDKLARFQQPVAYYLLPPELKNGGIKISRQALKEWVAQQL 455 (458)
T ss_pred CceEEEEEEcCc--ccCHHHHHHHHHhhchhccCCeEEEEecccccCcCCCcCHHHHHHHHHhcc
Confidence 888999988764 3678899999999999999999998776 9999999999999999998654
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=247.92 Aligned_cols=204 Identities=36% Similarity=0.578 Sum_probs=175.7
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeC-CCCCcccCCCCCceeEEEEecC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKD-PVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d-~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
.+|.++++.||+||++.+++.+..... ....++|.|++++ .++|.+ .+++++++.+ +.|||+++++
T Consensus 335 ~~~~~~~~~YG~TE~~~~~~~~~~~~~----------~~~~~~G~~~~~~-~~~v~~~d~~~~~~~~g--~~Gel~v~~~ 401 (541)
T TIGR03205 335 KTGLKLKSGWGMTETCSPGTGHPPEGP----------DKPGSIGLMLPGI-ELDVVSLDDPTKVLPPG--EVGELRIRGP 401 (541)
T ss_pred HhCCCeecccccccCCcccccCCCCCC----------CCCCCcceeccCc-eeEEEecCCCCccCCCC--CeeEEEEecC
Confidence 468899999999999876554321110 1234789999998 877754 2367788776 8899999999
Q ss_pred CcchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCC
Q 046870 82 TVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 161 (236)
.++.||+++|+.+.+.|.++||+|||+++++++|++++.||.+|+|+++|+++++.+||..+.+++.|.++++++.+++.
T Consensus 402 ~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~ 481 (541)
T TIGR03205 402 NVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQY 481 (541)
T ss_pred CccccccCChhhhHhhhccCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcc
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCceeEEEEEeCCCC-CCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHH
Q 046870 162 WGETPCAFVKLKDGC-VANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLR 219 (236)
Q Consensus 162 ~~~~~~~~v~~~~~~-~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~ 219 (236)
.++.+++++++.++. ..+..++.+++++.|+++++|..+.+++ ||+|++||++|++|+
T Consensus 482 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 482 RGEAAKAFVKLRPGAKPFSLDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR 541 (541)
T ss_pred cCceEEEEEEECCCCCcCCHHHHHHHHHhhcccccCCcEEEEeccCCCCcccceeHhhcC
Confidence 778888988887653 3567899999999999999999998777 999999999999873
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=246.09 Aligned_cols=204 Identities=35% Similarity=0.499 Sum_probs=176.5
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++.++..+.... ....++|.|++++ .++|+|+ ++.+++.+ +.|||++++++
T Consensus 301 ~~~~~v~~~YG~tE~~~~~~~~~~~~-----------~~~~~~G~~~~g~-~v~i~d~-~~~~~~~g--~~Gel~i~~~~ 365 (508)
T TIGR02262 301 RFGVDIVDGIGSTEMLHIFLSNLPGD-----------VRYGTSGKPVPGY-RLRLVGD-GGQDVAAG--EPGELLISGPS 365 (508)
T ss_pred HhCCchhhCccccccCceeecCCccC-----------CCCCCcCCCCCCc-EEEEECC-CCCCCCCC--CeeEEEEecCc
Confidence 46889999999999987544322110 1234789999998 9999996 88888887 89999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.+|+++++.+...+.++||+|||+++++++|.++++||.+|+|+++|.++++.+||+.+.++++|.++++++.++...
T Consensus 366 ~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~ 445 (508)
T TIGR02262 366 SATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDG 445 (508)
T ss_pred cccccCCCHHHhHhhhhcCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCC
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999877666
Q ss_pred CceeEEEEEeCCCCC---CCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHH
Q 046870 163 GETPCAFVKLKDGCV---ANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREK 221 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~---~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~ 221 (236)
.+.+.+++++.+... ...+++.+.+++++++++.|..+.+++ ||+|++||++|++|++|
T Consensus 446 ~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~ 508 (508)
T TIGR02262 446 LIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLREG 508 (508)
T ss_pred CceeEEEEEeCCCCccccccHHHHHHHHHHhcccCCCCceEEEecCCCCCCCCcEehhhccCC
Confidence 677888888776532 235789999999999999999888666 99999999999998754
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=295.17 Aligned_cols=207 Identities=26% Similarity=0.332 Sum_probs=179.4
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
+.+++|.||+||++..++........ .......++|+|++++ .++|+|+ +++++|.| ++|||+|+|++++
T Consensus 2287 ~~~l~n~YG~TE~~~~~~~~~~~~~~------~~~~~~~~iG~p~~~~-~~~i~d~-~~~~vp~g--~~GEl~i~G~~v~ 2356 (5163)
T PRK12316 2287 PVYLFNGYGPTEAVVTPLLWKCRPQD------PCGAAYVPIGRALGNR-RAYILDA-DLNLLAPG--MAGELYLGGEGLA 2356 (5163)
T ss_pred CcEEEECccchhheeeeeeeeccccc------ccCCCcCCcccccCCC-EEEEECC-CCCCCCCC--CeeEEEecchhhc
Confidence 47899999999997655443322110 0111235799999999 9999998 88999888 9999999999999
Q ss_pred hhhcCCchhhhcccC--------CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEe
Q 046870 85 NGYLKNLKATQDAFD--------GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVG 156 (236)
Q Consensus 85 ~~y~~~~~~~~~~~~--------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 156 (236)
+||+++|+.|.+.|. ++||+|||++++++||.|+++||+||+||++|++|++.+||..|.++|+|.+++|++
T Consensus 2357 ~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~ 2436 (5163)
T PRK12316 2357 RGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVA 2436 (5163)
T ss_pred ccccCChhhhhhhccCCCCCCCCCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEE
Confidence 999999999998872 359999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHH
Q 046870 157 RPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKA 222 (236)
Q Consensus 157 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~ 222 (236)
.++. .++.++++++.......+..++.+++++.|+.|++|..+++++ ||+|++||++|++|.+..
T Consensus 2437 ~~~~-~~~~l~a~v~~~~~~~~~~~~l~~~l~~~Lp~~~vP~~~~~l~~lP~t~~GKidR~~L~~~~ 2502 (5163)
T PRK12316 2437 QDGA-SGKQLVAYVVPDDAAEDLLAELRAWLAARLPAYMVPAHWVVLERLPLNPNGKLDRKALPKPD 2502 (5163)
T ss_pred EecC-CCeEEEEEEEecCCCccCHHHHHHHHHhhCchhcCcceEeeecccCCCCCCccCHhhcCCCc
Confidence 8655 6778999999887766788999999999999999999998776 999999999999997654
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=268.14 Aligned_cols=211 Identities=23% Similarity=0.296 Sum_probs=174.5
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|++++|.||+||++..++......... ........++|.|++++ .+.|+|+ ++++++.| +.|||+|+|+.
T Consensus 740 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~----~~~~~~~~~iG~p~~~~-~~~i~d~-~~~~~~~g--~~Gel~i~g~~ 811 (1296)
T PRK10252 740 LTGAPLHNLYGPTEAAVDVSWYPAFGEEL----AAVRGSSVPIGYPVWNT-GLRILDA-RMRPVPPG--VAGDLYLTGIQ 811 (1296)
T ss_pred cCCCEEEeCCCcchhhheeeeeecccccc----cccCCCCCCcccccCCC-EEEEECC-CCCCCCCC--CceEEEecccc
Confidence 45889999999999986555433211100 00011235799999999 9999997 89999888 89999999999
Q ss_pred cchhhcCCchhhhcccC-------CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEE
Q 046870 83 VMNGYLKNLKATQDAFD-------GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVV 155 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~-------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 155 (236)
+++||+++|+.|.+.|. ++||+|||+++++++|.++++||.|++||++|++|++.+||..|.++|.|.+++++
T Consensus 812 ~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~ 891 (1296)
T PRK10252 812 LAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTH 891 (1296)
T ss_pred cchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEE
Confidence 99999999999988872 34999999999999999999999999999999999999999999999999999776
Q ss_pred ecc----CCCCC--ceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHH
Q 046870 156 GRP----DDHWG--ETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREK 221 (236)
Q Consensus 156 ~~~----~~~~~--~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~ 221 (236)
... ....+ ..++++++...+...+.+++.+++++.|+.|++|..++.++ ||+|++||++|++|.+.
T Consensus 892 ~~~~~~~~~~~~~~~~lva~v~~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GKidr~~L~~~ 964 (1296)
T PRK10252 892 ACVINQAAATGGDARQLVGYLVSQSGLPLDTSALQAQLRERLPPHMVPVVLLQLDQLPLSANGKLDRKALPLP 964 (1296)
T ss_pred EEeccccccCCCCccEEEEEEEcCCCCCCCHHHHHHHHHhhCchhcCCcEEEEecCCCCCCCcChhHHhcCCC
Confidence 542 11112 36888888776655678899999999999999999998776 99999999999999753
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=255.10 Aligned_cols=207 Identities=24% Similarity=0.332 Sum_probs=162.2
Q ss_pred cc-CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCC-CCC-cccCCCCCceeEEEEec
Q 046870 4 LG-FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP-VTM-KSVPSDAKTIGEVMFRG 80 (236)
Q Consensus 4 ~g-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~-~~~-~~~~~~~~~~Gel~v~~ 80 (236)
++ .++++.||+||+++.++...... ....+++|+|++++ +++|+|. ++| ..++.+ ..|||+++|
T Consensus 406 ~~~~~l~~~YG~TE~~~~~~~~~~~~----------~~~~gsvG~p~p~~-ev~i~d~~~~g~~~~~~~--~~GEi~vrG 472 (660)
T PLN02861 406 TSCSVLSQGYGLTESCGGCFTSIANV----------FSMVGTVGVPMTTI-EARLESVPEMGYDALSDV--PRGEICLRG 472 (660)
T ss_pred HcCCCeeEecchhhhhhceeeccccc----------CCCCCCccCccCce-EEEEEEccccCcccCCCC--CceeEEEcC
Confidence 45 47999999999976544321110 11245899999999 9999973 234 222333 569999999
Q ss_pred CCcchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEE-cceeeCHHHHHHHHhcCCCcceEEEEeccC
Q 046870 81 NTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIIS-GGENISTIEVESVLFSHPSVLEAAVVGRPD 159 (236)
Q Consensus 81 ~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 159 (236)
++++.|||++|+.|.+.|.+|||+|||+|++|++|+|+|+||++|+||. +|++|+|.+||+.|.++|.|.+++|++.+.
T Consensus 473 p~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~ 552 (660)
T PLN02861 473 NTLFSGYHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSF 552 (660)
T ss_pred CcccccccCCHHHHHhhhhccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999995 799999999999999999999999999762
Q ss_pred CCCCceeEEEEEeCCCC----------CCCH----------HHHHHHHHh-----cCCCCCCccEEEEcc--c-----CC
Q 046870 160 DHWGETPCAFVKLKDGC----------VANG----------EEIINYCRD-----RLPHYMAPRTVVFED--L-----PK 207 (236)
Q Consensus 160 ~~~~~~~~~~v~~~~~~----------~~~~----------~~l~~~l~~-----~l~~~~~p~~i~~~~--l-----P~ 207 (236)
++.++++|++.... ..+. ..+.+.+++ .+..+..++.+++.+ | .+
T Consensus 553 ---~~~~~A~vv~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~l 629 (660)
T PLN02861 553 ---ESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLI 629 (660)
T ss_pred ---cceeEEEEEcCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcC
Confidence 34688888866320 0111 123344433 378899999988754 6 79
Q ss_pred CCCCcccHHHHHHHHHhcC
Q 046870 208 TSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 208 t~~GKi~R~~l~~~~~~~~ 226 (236)
|+++|+.|+.+.+.|++.-
T Consensus 630 T~t~K~~R~~i~~~y~~~I 648 (660)
T PLN02861 630 TPTFKLKRPQLLKYYKDCI 648 (660)
T ss_pred CHHHhhhHHHHHHHHHHHH
Confidence 9999999999999987754
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=241.40 Aligned_cols=208 Identities=27% Similarity=0.321 Sum_probs=173.3
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
+.++++.||+||++..++........ .......++|.+.+++ .++|+|+ ++.+++.+ +.|||+++++.++
T Consensus 286 ~~~~~~~yG~tE~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~~~~ 355 (503)
T PRK04813 286 SATIYNTYGPTEATVAVTSIEITDEM------LDQYKRLPIGYAKPDS-PLLIIDE-EGTKLPDG--EQGEIVISGPSVS 355 (503)
T ss_pred CceEEeCcccchheeEEEEEEecccc------cccCCCCcccccCCCC-EEEEECC-CCCCCCCC--CceEEEEeccccc
Confidence 68899999999997654443222110 0112234789999999 9999997 88888877 7899999999999
Q ss_pred hhhcCCchhhhcccC--C--CeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 85 NGYLKNLKATQDAFD--G--GWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 85 ~~y~~~~~~~~~~~~--~--g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
.||+++++.+...|. + +||+|||++++ .+|.+++.||.+|+|+++|+++++.+||+.+..+|.|.++++++.+++
T Consensus 356 ~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 434 (503)
T PRK04813 356 KGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKD 434 (503)
T ss_pred cccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCC
Confidence 999999998887762 3 49999999999 899999999999999999999999999999999999999999997766
Q ss_pred CCCceeEEEEEeCCCCCC----CHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHH
Q 046870 161 HWGETPCAFVKLKDGCVA----NGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAK 223 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~----~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~ 223 (236)
..++.+++++++.+.... ..+++.+++.++++.+++|..+.+++ ||+|++||++|++|++++.
T Consensus 435 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~ 502 (503)
T PRK04813 435 HKVQYLIAYVVPKEEDFEREFELTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEVN 502 (503)
T ss_pred CCccEEEEEEEeccccccccchhHHHHHHHHHhhCccccCCeEEEEeccCCCCCCCCCcHHHHHHHhc
Confidence 666788888887653111 12568899999999999999998777 9999999999999998875
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=289.86 Aligned_cols=209 Identities=29% Similarity=0.361 Sum_probs=178.5
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
+++++|.||+||++..++....... ........++|+|++++ .+.|+|. +++++|.| ++|||+|+|+.++
T Consensus 3377 ~~~l~n~YG~TE~~~~~~~~~~~~~------~~~~~~~~~iG~p~~~~-~~~v~d~-~~~~vp~G--~~GEL~i~G~~v~ 3446 (3956)
T PRK12467 3377 PRGLTNGYGPTEAVVTVTLWKCGGD------AVCEAPYAPIGRPVAGR-SIYVLDG-QLNPVPVG--VAGELYIGGVGLA 3446 (3956)
T ss_pred CCEEEeCcccchhEeeeEEEecccc------cccCCCCCCCccccCCC-EEEEECC-CCCCCCCC--CCceEEEcchhhh
Confidence 4789999999999865544332111 00112335899999999 9999997 89999988 8999999999999
Q ss_pred hhhcCCchhhhcccC--------CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEe
Q 046870 85 NGYLKNLKATQDAFD--------GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVG 156 (236)
Q Consensus 85 ~~y~~~~~~~~~~~~--------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 156 (236)
+||+++|+.|.+.|. ++||+|||+|++++||.|+++||+|++||++|++|++.+||+.|.++|+|.+++|+.
T Consensus 3447 ~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~ 3526 (3956)
T PRK12467 3447 RGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLA 3526 (3956)
T ss_pred hhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEE
Confidence 999999999998873 347999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHh
Q 046870 157 RPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKA 224 (236)
Q Consensus 157 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~ 224 (236)
... ..++.++++++.........+++.+.++++|+.|++|..+++.+ ||+|++||++|++|.+...+
T Consensus 3527 ~~~-~~~~~lva~v~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~~~ 3594 (3956)
T PRK12467 3527 RDG-AGGKQLVAYVVPADPQGDWRETLRDHLAASLPDYMVPAQLLVLAAMPLGPNGKVDRKALPDPDAK 3594 (3956)
T ss_pred ecC-CCCcEEEEEEeCCCCCcccHHHHHHHHhccCChhhCCCeeeeeccCCCCCCCccchhhcCCCCcc
Confidence 753 35678999998876555677899999999999999999998777 99999999999999876543
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=289.79 Aligned_cols=202 Identities=28% Similarity=0.343 Sum_probs=176.4
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
+.+++|.||+||++..+........ .....++|+|++++ .++|+|+ +++++|.| +.|||+|+|+.++
T Consensus 796 ~~~l~n~YG~TE~~~~~~~~~~~~~---------~~~~~~iG~p~~~~-~~~i~d~-~~~~~p~G--~~GEl~i~G~~v~ 862 (5163)
T PRK12316 796 QAGLYNLYGPTEAAIDVTHWTCVEE---------GGDSVPIGRPIANL-ACYILDA-NLEPVPVG--VLGELYLAGRGLA 862 (5163)
T ss_pred CCeEEeCcCcChheeeeeEEecccc---------cCCCCCCccccCCC-EEEEECC-CCCCCCCC--CceEEEecccccC
Confidence 5889999999999754433322111 12235799999999 9999998 88999888 8999999999999
Q ss_pred hhhcCCchhhhcccC-------CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEec
Q 046870 85 NGYLKNLKATQDAFD-------GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGR 157 (236)
Q Consensus 85 ~~y~~~~~~~~~~~~-------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 157 (236)
+||+++|+.|.+.|. ++||+|||++++++||.|+|+||+||+||++|++|+|.+||..|.++|.|.+++|++.
T Consensus 863 ~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~ 942 (5163)
T PRK12316 863 RGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAV 942 (5163)
T ss_pred hhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEc
Confidence 999999999988772 3599999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHH
Q 046870 158 PDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAK 223 (236)
Q Consensus 158 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~ 223 (236)
+ ++.++++|+..+.......++.++++++|+.|++|..+++++ ||+|++||++|++|.+...
T Consensus 943 ~----~~~lva~vv~~~~~~~~~~~l~~~l~~~Lp~y~vP~~i~~v~~lP~t~~GKidr~~L~~~~~ 1005 (5163)
T PRK12316 943 D----GKQLVGYVVLESEGGDWREALKAHLAASLPEYMVPAQWLALERLPLTPNGKLDRKALPAPEA 1005 (5163)
T ss_pred C----CCeEEEEEEccCCCCCCHHHHHHHHHhhCCCccCCCeEEEHhhCCCCCCCChhHHhhcCccc
Confidence 6 567999999887656678899999999999999999998877 9999999999999986543
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=247.57 Aligned_cols=209 Identities=25% Similarity=0.270 Sum_probs=165.2
Q ss_pred CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC--c
Q 046870 6 FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT--V 83 (236)
Q Consensus 6 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~--~ 83 (236)
.++++.||+||++++++..... . ....+++|.|.+++ ++.|+|+ +|++++.+..+.|||++.++. .
T Consensus 498 ~~i~~~yG~TE~~~~~~~~~~~-----~-----~~~~g~~g~p~~g~-~v~v~d~-~g~~v~~g~~~~GEL~v~~~~~~~ 565 (728)
T PLN03052 498 KPIIEYCGGTELGGGFVTGSLL-----Q-----PQAFAAFSTPAMGC-KLFILDD-SGNPYPDDAPCTGELALFPLMFGA 565 (728)
T ss_pred CCeEeeccChhhCcccccCCCC-----C-----CCCCCccccCCCCc-eEEEECC-CCCCCCCCCCceEEEEEeCCCCCC
Confidence 5799999999998654432210 0 01235789999999 9999997 899998763236999998653 2
Q ss_pred chhhcCCchhhhccc-------CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHh-cCCCcceEEEE
Q 046870 84 MNGYLKNLKATQDAF-------DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLF-SHPSVLEAAVV 155 (236)
Q Consensus 84 ~~~y~~~~~~~~~~~-------~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~ 155 (236)
..+|+++.. ....| .+.||+|||+++++++|+++|+||.||+||++|++|.+.+||+++. .+|.|.+++|+
T Consensus 566 ~~~~~~~~~-~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVv 644 (728)
T PLN03052 566 SSTLLNADH-YKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAI 644 (728)
T ss_pred CccccCchh-hhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEE
Confidence 346666532 22222 1238999999999999999999999999999999999999999995 78999999999
Q ss_pred eccCCCCC-ceeEEEEEeC--CCCCCCHHHHHH----HHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCC
Q 046870 156 GRPDDHWG-ETPCAFVKLK--DGCVANGEEIIN----YCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGS 227 (236)
Q Consensus 156 ~~~~~~~~-~~~~~~v~~~--~~~~~~~~~l~~----~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~ 227 (236)
+.+++..+ +.++++|++. ++...+..+|.+ .+++++++++.|..|++++ ||+|.+||++|+.|++++.+..+
T Consensus 645 g~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~~~~~~ 724 (728)
T PLN03052 645 GVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVLRQQLAQELS 724 (728)
T ss_pred eeecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCchHHHHHHHHHHHHhhhh
Confidence 99887665 7899999987 444445455554 5667788999999998877 99999999999999999887765
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=239.09 Aligned_cols=206 Identities=34% Similarity=0.525 Sum_probs=174.6
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|.++++.||+||++.+....... ......++|.|.++ .++|+|+ ++.+++.+ +.|||+++++
T Consensus 298 ~~g~~v~~~YG~tE~~~~~~~~~~~----------~~~~~~~vG~~~~g--~~~i~d~-~~~~~~~g--~~Gel~~~g~- 361 (511)
T PRK13391 298 WWGPIIHEYYAATEGLGFTACDSEE----------WLAHPGTVGRAMFG--DLHILDD-DGAELPPG--EPGTIWFEGG- 361 (511)
T ss_pred HcCCceeeeeccccccceEEecCcc----------ccccCCCcCCcccc--eEEEECC-CCCCCCCC--CceEEEEecC-
Confidence 4688899999999998654322110 01223578999998 5889997 88888777 8899999999
Q ss_pred cchhhcCCchhhhcccC--CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 83 VMNGYLKNLKATQDAFD--GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~--~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
+..+|+++++.+...+. ++||+|||+++++++|.+++.||.+|+++++|.++++.+||+.+.+++.|.++++++.++.
T Consensus 362 ~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~ 441 (511)
T PRK13391 362 RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNE 441 (511)
T ss_pred cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCc
Confidence 78899999998887663 4899999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCceeEEEEEeCCCCCC---CHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHh
Q 046870 161 HWGETPCAFVKLKDGCVA---NGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKA 224 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~---~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~ 224 (236)
..++.+++++++.+.... ..+++.+++++.++.++.|..+.+++ +|+|++||++|+.|++.+..
T Consensus 442 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~ 509 (511)
T PRK13391 442 DLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDRYWG 509 (511)
T ss_pred ccCceeEEEEEECCCCCcccchHHHHHHHHHhhcccCcCCcEEEEeecCCCCCccceeHHHHHHHhhc
Confidence 778888888887654322 24789999999999999999998766 99999999999999998864
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=252.27 Aligned_cols=198 Identities=18% Similarity=0.212 Sum_probs=158.6
Q ss_pred ccc-CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEe-----------CCCCC--cccCC
Q 046870 3 ELG-FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIK-----------DPVTM--KSVPS 68 (236)
Q Consensus 3 ~~g-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~-----------d~~~~--~~~~~ 68 (236)
.++ +++++.||+||++...... . . ....++|+|++++.+++|. |. +| +.++.
T Consensus 741 ~~~~~~l~~~YG~TE~~~~~~~~--~-~----------~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~-~G~~~~~~~ 806 (994)
T PRK07868 741 AFAPAHVVEFFATTDGQAVLANV--S-G----------AKIGSKGRPLPGAGRVELAAYDPEHDLILEDD-RGFVRRAEV 806 (994)
T ss_pred HhCchheeeeeeccccccccccc--C-C----------CCCcccCCccCCCCceeEEEecCcCCceeecC-CceEEEcCC
Confidence 355 7899999999986533211 0 0 1235899999997444443 32 45 44555
Q ss_pred CCCceeEEEEecCCcchhhcCCchhhhc--cc--CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHh
Q 046870 69 DAKTIGEVMFRGNTVMNGYLKNLKATQD--AF--DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLF 144 (236)
Q Consensus 69 ~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~--~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~ 144 (236)
+ +.|||+++++.. + +|+.+.. .| .+|||+|||++++|+||+|+|+||.||+||++|.+|+|.+||+.|.
T Consensus 807 g--e~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~ 879 (994)
T PRK07868 807 N--EVGVLLARARGP----I-DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALG 879 (994)
T ss_pred C--CceEEEEecCCC----C-ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHh
Confidence 5 889999998753 2 3443322 23 3799999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEEeccCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHH
Q 046870 145 SHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAK 223 (236)
Q Consensus 145 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~ 223 (236)
+||.|.+++|++.+++. ++.++++|+++++...+..+|.+++++ ++.|++|..+++++ ||+|++||++|++|+++..
T Consensus 880 ~hp~V~~aaVvg~~d~~-~~~~~a~Vv~~~~~~~~~~~L~~~l~~-l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~~~l 957 (994)
T PRK07868 880 RIGGVDLAVTYGVEVGG-RQLAVAAVTLRPGAAITAADLTEALAS-LPVGLGPDIVHVVPEIPLSATYRPTVSALRAAGI 957 (994)
T ss_pred cCCCeeEEEEEeecCCC-CceEEEEEEeCCCCcCCHHHHHHHHHh-CCCCcCCeEEEEeCCCCCCccccEehHHHHhcCC
Confidence 99999999999998765 578889999887766788999999986 99999999998877 9999999999999987643
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.8e-32 Score=279.20 Aligned_cols=207 Identities=29% Similarity=0.398 Sum_probs=174.6
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
+++++|.||+||++..++......... .....++|+|++++ .++|+|+ +++++|.| +.|||+|+|+.++
T Consensus 797 ~~~l~n~YG~TE~~~~~~~~~~~~~~~-------~~~~~~iG~p~~~~-~~~i~d~-~~~~vp~G--~~GEL~i~G~~v~ 865 (3956)
T PRK12467 797 GARLINHYGPTETTVGVSTYELSDEER-------DFGNVPIGQPLANL-GLYILDH-YLNPVPVG--VVGELYIGGAGLA 865 (3956)
T ss_pred CCEEEeCcCCChhhhheeeEecccccc-------cCCCCcccCCcCCC-EEEEECC-CCCCCCCC--CceEEEecccccc
Confidence 589999999999987665543221110 01135799999999 9999998 88999888 8999999999999
Q ss_pred hhhcCCchhhhcccC--------CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEe
Q 046870 85 NGYLKNLKATQDAFD--------GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVG 156 (236)
Q Consensus 85 ~~y~~~~~~~~~~~~--------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 156 (236)
+||+++|+.|.+.|. ++||+|||+++++++|.++++||.||+||++|++|++.+||..|.++|.|.+++|+.
T Consensus 866 ~GYl~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~vki~G~rI~~~eIE~~L~~~p~V~~a~v~~ 945 (3956)
T PRK12467 866 RGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVREAVVLA 945 (3956)
T ss_pred hhhcCCccccHhhCcCCCCCCCCceeEecCceeEEcCCCcEEEeccccCeEEECCEecCHHHHHHHHHhCCCcceEEEEE
Confidence 999999999998872 349999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCceeEEEEEeCCC-----CCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHH
Q 046870 157 RPDDHWGETPCAFVKLKDG-----CVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAK 223 (236)
Q Consensus 157 ~~~~~~~~~~~~~v~~~~~-----~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~ 223 (236)
.+.. .++.++++++.... ......++.+++++.|+.|++|..+++++ ||+|++||++|++|.+...
T Consensus 946 ~~~~-~~~~lva~vv~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~~ 1017 (3956)
T PRK12467 946 QPGD-AGLQLVAYLVPAAVADGAEHQATRDELKAQLRQVLPDYMVPAHLLLLDSLPLTPNGKLDRKALPKPDA 1017 (3956)
T ss_pred EcCC-CCcEEEEEEEecccccccccccCHHHHHHHHHhhCchhcCCceEeeecccCCCCCCCcCHhhcCCccc
Confidence 6543 45678888875422 23456889999999999999999998776 9999999999999987543
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=232.31 Aligned_cols=195 Identities=34% Similarity=0.607 Sum_probs=164.2
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++........... ....++|.|++++ ++.|..+.. + +.|||+++++.
T Consensus 241 ~~~~~~~~~YG~tE~~~~~~~~~~~~~----------~~~~~~G~~~~~~-~~~i~~~~~------~--~~Gel~v~~~~ 301 (436)
T TIGR01923 241 QYGLPIYLSYGMTETCSQVTTATPEML----------HARPDVGRPLAGR-EIKIKVDNK------E--GHGEIMVKGAN 301 (436)
T ss_pred HhCCceeeEecCCccchhccCcCcccc----------ccccCCCccCCCc-EEEEEeCCC------C--CceEEEEECCc
Confidence 358899999999999865443321110 0112489999998 888843212 1 56999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.||+++++.+...+.++||+|||+++++.+|.+++.||.+|+|+++|.++++.+||+.+..++.|.++++++.++...
T Consensus 302 ~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 381 (436)
T TIGR01923 302 LMKGYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEW 381 (436)
T ss_pred cchhhCCChhhhhhhhcCCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhc
Confidence 99999998888877777899999999999999999999999999999999999999999999999999999999887766
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHH
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVL 218 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l 218 (236)
+..+.+++.+.+. .+.+++.+++++.++.+++|..+.+++ ||+|++||++|++|
T Consensus 382 ~~~~~~~v~~~~~--~~~~~l~~~l~~~l~~~~~p~~i~~~~~iP~t~~GK~~r~~L 436 (436)
T TIGR01923 382 GQVPVAYIVSESD--ISQAKLIAYLTEKLAKYKVPIAFEKLDELPYNASGKILRNQL 436 (436)
T ss_pred CCeeEEEEEECCC--CCHHHHHHHHHHhhhCCCCCeEEEEecCCCCCCCCceecccC
Confidence 7778888887764 678899999999999999999998776 99999999999864
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=241.38 Aligned_cols=209 Identities=24% Similarity=0.318 Sum_probs=159.6
Q ss_pred ccC-eeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccC----CcceE--------EEeCCCCCcccCCCC
Q 046870 4 LGF-TLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHL----GLDEI--------DIKDPVTMKSVPSDA 70 (236)
Q Consensus 4 ~g~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~----~~~~v--------~i~d~~~~~~~~~~~ 70 (236)
++. .+++.||+||++...... . ....++|.+.+ +...+ .+.+. ++...+.+.
T Consensus 336 ~~~~~l~~~YG~tE~~~~~~~~-~-------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~ 400 (600)
T PRK08279 336 FGIPRILEFYAASEGNVGFINV-F-------------NFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDA-DGRCIKVKP 400 (600)
T ss_pred hCcceeeeeecccccceeeccc-C-------------CCCcccccccccccccceeeeeccCcCceeeCC-CCccccCCC
Confidence 453 599999999997532211 0 01124565555 33111 22222 222222233
Q ss_pred CceeEEE--EecCCcchhhcCCchhhhccc-------CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHH
Q 046870 71 KTIGEVM--FRGNTVMNGYLKNLKATQDAF-------DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVES 141 (236)
Q Consensus 71 ~~~Gel~--v~~~~~~~~y~~~~~~~~~~~-------~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~ 141 (236)
|+.|||+ +.++.++.|| +++..+...+ .++||+|||+++++++|+|++.||.+|+||++|++++|.+||+
T Consensus 401 g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~ 479 (600)
T PRK08279 401 GEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVEN 479 (600)
T ss_pred CCceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHH
Confidence 3889998 6788999999 8888877654 3579999999999999999999999999999999999999999
Q ss_pred HHhcCCCcceEEEEeccCCC-CCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHH
Q 046870 142 VLFSHPSVLEAAVVGRPDDH-WGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLR 219 (236)
Q Consensus 142 ~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~ 219 (236)
.+.++|.|.+++|++++.+. .+...+++++..++...+..++.++++++|++|++|..+++++ ||+|.+||++|++|+
T Consensus 480 ~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~ 559 (600)
T PRK08279 480 ALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFDLAALAAHLYERLPAYAVPLFVRLVPELETTGTFKYRKVDLR 559 (600)
T ss_pred HHhcCCCcceEEEEEeecCCCCCccceeEEEecCCccCCHHHHHHHHHhhCccccCCeEEEeecCCCCCcchhhhHHHHh
Confidence 99999999999999887543 2344556666555555788999999999999999999998776 999999999999999
Q ss_pred HHHHhcCCc
Q 046870 220 EKAKAMGSI 228 (236)
Q Consensus 220 ~~~~~~~~~ 228 (236)
+++.+....
T Consensus 560 ~~~~~~~~~ 568 (600)
T PRK08279 560 KEGFDPSKV 568 (600)
T ss_pred hcCCCcccc
Confidence 988877433
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.5e-31 Score=233.10 Aligned_cols=204 Identities=30% Similarity=0.436 Sum_probs=171.9
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCC--CccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQG--VPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
+.++++.||+||++.++....... ....| .+.++. .+.|+++ ++.+++.+....|+++. ++.
T Consensus 322 ~~~~~~~YG~tE~~~~~~~~~~~~-------------~~~~g~~~~~~~~-~~~i~~~-~~~~~~~g~~~~g~l~~-~~~ 385 (533)
T PRK07798 322 NVVLTDSIGSSETGFGGSGTVAKG-------------AVHTGGPRFTIGP-RTVVLDE-DGNPVEPGSGEIGWIAR-RGH 385 (533)
T ss_pred CCeEEeeecccccccccccCCCCC-------------CccCCCCccCCCc-eEEEECC-CCCCCCCCCCCeeEEEe-ecC
Confidence 688999999999966544321100 01233 677777 9999998 78888877322377765 567
Q ss_pred cchhhcCCchhhhcccC----CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEecc
Q 046870 83 VMNGYLKNLKATQDAFD----GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRP 158 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~----~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 158 (236)
++.+|+++++.+.+.|. ++||+|||+++++++|+++++||.+|+|+.+|+++++.+||+.+.+++.|.++++++.+
T Consensus 386 ~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~ 465 (533)
T PRK07798 386 IPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVP 465 (533)
T ss_pred ccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEEEecc
Confidence 89999999999988773 35999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHh
Q 046870 159 DDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKA 224 (236)
Q Consensus 159 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~ 224 (236)
+...++.+.+++++.+....+.+++.+++++.++.+++|..+++.+ ||+|++||++|+.|++++.+
T Consensus 466 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~~~~~~~~~~~ 532 (533)
T PRK07798 466 DERWGQEVVAVVQLREGARPDLAELRAHCRSSLAGYKVPRAIWFVDEVQRSPAGKADYRWAKEQAAE 532 (533)
T ss_pred CcccCceEEEEEEECCCCCCCHHHHHHHHhhhcccCCCCeEEEEcccCCCCCcchhhHHHHhhhhcc
Confidence 7777788889988887666788999999999999999999998776 99999999999999999865
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-31 Score=242.99 Aligned_cols=209 Identities=29% Similarity=0.398 Sum_probs=160.8
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCc-ccCCCCCceeEEEEecC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMK-SVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~-~~~~~~~~~Gel~v~~~ 81 (236)
.+|+++++.||+||+++.++...... ...+++|.|++++ +++|+|.+++. .+....+..|||+|+|+
T Consensus 443 ~~g~~v~~~YG~TEt~~~~~~~~~~~-----------~~~gsvG~p~p~~-evkivd~~~~~~~~~~~~~p~GEi~vrGp 510 (696)
T PLN02387 443 CLGAPIGQGYGLTETCAGATFSEWDD-----------TSVGRVGPPLPCC-YVKLVSWEEGGYLISDKPMPRGEIVIGGP 510 (696)
T ss_pred HcCCCeeEeechhhcccceeecCccc-----------CCCCccCCCCCce-EEEEeeccccCcccCCCCCCCceEEeccC
Confidence 37899999999999986554432110 1235899999999 99999843443 22111224599999999
Q ss_pred CcchhhcCCchhhhcccC---CC--eEeccceEEEecCCeEEEEccCCCeEEE-cceeeCHHHHHHHHhcCCCcceEEEE
Q 046870 82 TVMNGYLKNLKATQDAFD---GG--WFRSGDLGVRHPDGYIELKDRSKDIIIS-GGENISTIEVESVLFSHPSVLEAAVV 155 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~~---~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~ 155 (236)
+++.|||++|+.|.+.|. +| ||+|||+|++|++|+|+|.||.+|+||. +|++|+|.+||+.|.++|.|.+++|+
T Consensus 511 ~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~ 590 (696)
T PLN02387 511 SVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVH 590 (696)
T ss_pred cccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEE
Confidence 999999999999998872 35 9999999999999999999999999996 69999999999999999999999999
Q ss_pred eccCCCCCceeEEEEEeCCCCC-----------CC----------HHHHHHHH-----HhcCCCCCCccEEEEcc--cC-
Q 046870 156 GRPDDHWGETPCAFVKLKDGCV-----------AN----------GEEIINYC-----RDRLPHYMAPRTVVFED--LP- 206 (236)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~~~~~-----------~~----------~~~l~~~l-----~~~l~~~~~p~~i~~~~--lP- 206 (236)
+.+.. ..++++|++.+... .+ .+++.+.+ +++|..+++|+.+++.. +-
T Consensus 591 g~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~ 667 (696)
T PLN02387 591 ADPFH---SYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTP 667 (696)
T ss_pred ecCCc---ceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCC
Confidence 87532 23677777654210 01 11222222 33689999999998765 32
Q ss_pred ----CCCCCcccHHHHHHHHHhcC
Q 046870 207 ----KTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 207 ----~t~~GKi~R~~l~~~~~~~~ 226 (236)
+|++.|+.|+.+++.|++..
T Consensus 668 ~~g~lT~t~K~~R~~i~~~y~~~i 691 (696)
T PLN02387 668 ESGLVTAALKLKREQIRKKFKDDL 691 (696)
T ss_pred CCCcCChhhhhhhHHHHHHHHHHH
Confidence 78999999999999998753
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-31 Score=252.69 Aligned_cols=204 Identities=23% Similarity=0.315 Sum_probs=167.9
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++......... . ....++|+|++++ ++++.+. .+ .++.|||+++|+.
T Consensus 930 ~~~~~~~~~YG~TE~~~~~~~~~~~-~----------~~~~~vG~p~~g~-~~~~~~~-~~------~~~~Gel~v~g~~ 990 (1140)
T PRK06814 930 KFGIRILEGYGVTETAPVIALNTPM-H----------NKAGTVGRLLPGI-EYRLEPV-PG------IDEGGRLFVRGPN 990 (1140)
T ss_pred HhCCcEEeccccccccceEEecCCC-C----------CCCCcCCccCCCC-eEEEeec-CC------CCCceEEEEeCCC
Confidence 4688999999999998654432211 0 1235799999999 8988765 32 1266999999999
Q ss_pred cchhhcCCchhhh-cccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCC
Q 046870 83 VMNGYLKNLKATQ-DAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161 (236)
Q Consensus 83 ~~~~y~~~~~~~~-~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 161 (236)
++.||++++.... ....+|||+|||++++|+||+++++||.||+||++|+++++.+||+.+.+++.+.++++++.+++.
T Consensus 991 ~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~ 1070 (1140)
T PRK06814 991 VMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDAR 1070 (1140)
T ss_pred cchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCC
Confidence 9999998765332 223589999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCceeEEEEEeCCCCCCCHHHHHHHHHhc-CCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCCc
Q 046870 162 WGETPCAFVKLKDGCVANGEEIINYCRDR-LPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSI 228 (236)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~~ 228 (236)
.++.+++++.. ...+.+++.+++++. ++++++|..+.+++ +|+|++||++|++|++++.+....
T Consensus 1071 ~g~~~~~~~~~---~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~ 1136 (1140)
T PRK06814 1071 KGERIILLTTA---SDATRAAFLAHAKAAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEEAAAK 1136 (1140)
T ss_pred CCceEEEEEcC---CCcCHHHHHHHHHHcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHhhcc
Confidence 78877766542 235678888888864 99999999998776 999999999999999998876543
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.1e-32 Score=280.35 Aligned_cols=205 Identities=26% Similarity=0.323 Sum_probs=173.0
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
+++++|.||+||++..++........ ......++|+|++++ .+.|+|. .++++|.| .+|||+|+|+.++
T Consensus 4009 ~~~l~n~YG~TE~t~~~~~~~~~~~~-------~~~~~~~iG~p~~~~-~~~v~d~-~~~~~p~g--~~GEL~i~G~~v~ 4077 (4334)
T PRK05691 4009 QIGLVNAYGPAECSDDVAFFRVDLAS-------TRGSYLPIGSPTDNN-RLYLLDE-ALELVPLG--AVGELCVAGTGVG 4077 (4334)
T ss_pred CCeEEeCccCccceeEEEEEEccccc-------ccCCcCCCCCccCCC-EEEEECC-CCCCCCCC--CceEEEEeccccc
Confidence 67899999999998765544322111 011234799999999 9999997 89999988 8999999999999
Q ss_pred hhhcCCchhhhccc--------CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEe
Q 046870 85 NGYLKNLKATQDAF--------DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVG 156 (236)
Q Consensus 85 ~~y~~~~~~~~~~~--------~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 156 (236)
+||+++|+.|.+.| .++||+|||++++++||.|+|+||.|++||++|++|.+.+||..|.++|+|.+++|+.
T Consensus 4078 ~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~~v~~a~v~~ 4157 (4334)
T PRK05691 4078 RGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVAV 4157 (4334)
T ss_pred ccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHHhCCCccEEEEEE
Confidence 99999999999887 2569999999999999999999999999999999999999999999999999988866
Q ss_pred ccCCCCCceeEEEEEeCCCCCC---CHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHH
Q 046870 157 RPDDHWGETPCAFVKLKDGCVA---NGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREK 221 (236)
Q Consensus 157 ~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~ 221 (236)
.. ...++.++++++....... ...++++.+++.||.|++|..++.++ ||+|++|||+|++|.+.
T Consensus 4158 ~~-~~~~~~l~a~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691 4158 QE-GVNGKHLVGYLVPHQTVLAQGALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred ec-CCCCcEEEEEEeCCcccccchHHHHHHHHHHHhhCChhhcCcceeecccCCCCCCCcccHhhcCCC
Confidence 54 3446678888887654322 23678899999999999999998776 99999999999999865
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-31 Score=276.65 Aligned_cols=203 Identities=25% Similarity=0.352 Sum_probs=174.9
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
+++++|.||+||++..++....... .....++|+|++++ .++|+|+ +++++|.| ++|||+|+|+.++
T Consensus 1414 ~~~l~n~YG~TE~~~~~~~~~~~~~---------~~~~~~iG~p~~~~-~~~i~d~-~~~~vp~G--~~GEL~i~G~~v~ 1480 (4334)
T PRK05691 1414 QVQLHNRYGPTETAINVTHWQCQAE---------DGERSPIGRPLGNV-LCRVLDA-ELNLLPPG--VAGELCIGGAGLA 1480 (4334)
T ss_pred CcEEEeCCCcChheeeeeeeecccc---------cCCCCcccceeCCC-EEEEECC-CCCCCCCC--CceEEEecCcccc
Confidence 5789999999999765543322111 01234799999999 9999998 88999888 8999999999999
Q ss_pred hhhcCCchhhhcccC--------CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEe
Q 046870 85 NGYLKNLKATQDAFD--------GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVG 156 (236)
Q Consensus 85 ~~y~~~~~~~~~~~~--------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 156 (236)
+||+++|+.|.+.|. .+||+|||+++++++|.++++||+|++||++|++|++.+||..|.++|.|.+++|+.
T Consensus 1481 ~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~ 1560 (4334)
T PRK05691 1481 RGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLV 1560 (4334)
T ss_pred hhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEE
Confidence 999999999998872 249999999999999999999999999999999999999999999999999999987
Q ss_pred ccCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHH
Q 046870 157 RPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREK 221 (236)
Q Consensus 157 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~ 221 (236)
.... .+..++++++..........++.+++.+.|+.|++|..+++++ ||+|++||++|++|.+.
T Consensus 1561 ~~~~-~~~~lva~~~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~~~~lP~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691 1561 REGA-AGAQLVGYYTGEAGQEAEAERLKAALAAELPEYMVPAQLIRLDQMPLGPSGKLDRRALPEP 1625 (4334)
T ss_pred eeCC-CCCEEEEEEEeCCCCCCCHHHHHHHHHHhCccccCCcEEEEccccCCCCCCCcChhhcCcc
Confidence 6544 4577888888776656677899999999999999999998776 99999999999999764
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=238.74 Aligned_cols=177 Identities=26% Similarity=0.472 Sum_probs=151.7
Q ss_pred ccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEc
Q 046870 43 ARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKD 121 (236)
Q Consensus 43 ~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~G 121 (236)
.++|.+++++ .++|+|+ ++..++.+ +.|||+++|+.++.||+++ ..+...+ .++||+|||++++ ++|+++++|
T Consensus 385 ~~vG~~~p~~-~v~i~d~-~~~~~~~g--~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~G 458 (579)
T PRK09192 385 VNCGKALPGH-EIEIRNE-AGMPLPER--VVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITG 458 (579)
T ss_pred eecCCcCCCc-EEEEECC-CCCCCCCC--CEEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEe
Confidence 4789999999 9999997 78888877 8999999999999999999 4555444 5899999999999 899999999
Q ss_pred cCCCeEEEcceeeCHHHHHHHHhcCCCcc--eEEEEeccCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCC-CCCCcc
Q 046870 122 RSKDIIISGGENISTIEVESVLFSHPSVL--EAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLP-HYMAPR 198 (236)
Q Consensus 122 R~~d~i~~~G~~v~~~~iE~~l~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~-~~~~p~ 198 (236)
|.+|+|+++|++|+|.+||+.|.++|.|. ++++++.+++. ++.++++++..+....+..++.+.+++.+. .+..|.
T Consensus 459 R~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 537 (579)
T PRK09192 459 RAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQCRISDEERRGQLIHALAALVRSEFGVEA 537 (579)
T ss_pred ccccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCC-CeeEEEEEEecCCChHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999998 88898888764 457788887766544566788888888764 577887
Q ss_pred EEEEc---ccCCCCCCcccHHHHHHHHHhcC
Q 046870 199 TVVFE---DLPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 199 ~i~~~---~lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
.+.+. .||+|++||++|++|++++.+-.
T Consensus 538 ~i~~~~~~~lP~t~~GKv~R~~l~~~~~~~~ 568 (579)
T PRK09192 538 AVELVPPHSLPRTSSGKLSRAKAKKRYLSGA 568 (579)
T ss_pred eEEEeCCCCcCCCCCcchhHHHHHHHHHcCC
Confidence 77654 39999999999999999987643
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=243.20 Aligned_cols=206 Identities=25% Similarity=0.375 Sum_probs=160.2
Q ss_pred cc-CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCC-CCC-cccCCCCCceeEEEEec
Q 046870 4 LG-FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP-VTM-KSVPSDAKTIGEVMFRG 80 (236)
Q Consensus 4 ~g-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~-~~~-~~~~~~~~~~Gel~v~~ 80 (236)
++ .+++++||+||++++++...... ....+++|.|.+++ ++++.|. +.+ .+++.+ ..|||+|+|
T Consensus 406 ~~~~~i~~~YG~TE~~~~~~~~~~~~----------~~~~gsvG~p~~~~-evki~d~~~~g~~~~~~~--~~GEi~vrg 472 (660)
T PLN02430 406 TSCAFVVQGYGLTETLGPTTLGFPDE----------MCMLGTVGAPAVYN-ELRLEEVPEMGYDPLGEP--PRGEICVRG 472 (660)
T ss_pred hcCCCeeeecchhhhhhceEeecccc----------CCCCCCccCCCCce-EEEEEEcCCcCcccCCCC--CcceEEecC
Confidence 44 67999999999987655432110 12246899999999 9999863 233 333333 679999999
Q ss_pred CCcchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEE-cceeeCHHHHHHHHhcCCCcceEEEEeccC
Q 046870 81 NTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIIS-GGENISTIEVESVLFSHPSVLEAAVVGRPD 159 (236)
Q Consensus 81 ~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 159 (236)
++++.|||++|+.|.+.+.+|||+|||+|+++++|+|++.||.+|+|+. +|++|+|.+||..+.++|.|.+++|++..
T Consensus 473 ~~v~~GY~~~~e~t~~~~~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~- 551 (660)
T PLN02430 473 KCLFSGYYKNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS- 551 (660)
T ss_pred CCccccccCChHHhhhhhhccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC-
Confidence 9999999999999999999999999999999999999999999999995 79999999999999999999999999843
Q ss_pred CCCCceeEEEEEeCCCCC----------CC------HHHHH----HH---H--HhcCCCCCCccEEEEcc--c-----CC
Q 046870 160 DHWGETPCAFVKLKDGCV----------AN------GEEII----NY---C--RDRLPHYMAPRTVVFED--L-----PK 207 (236)
Q Consensus 160 ~~~~~~~~~~v~~~~~~~----------~~------~~~l~----~~---l--~~~l~~~~~p~~i~~~~--l-----P~ 207 (236)
....++++|++.+... .+ ..++. +. + ++.|+.|..++.+++.+ | .+
T Consensus 552 --~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~l 629 (660)
T PLN02430 552 --FKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLV 629 (660)
T ss_pred --CcceEEEEEEcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcC
Confidence 2356888888764210 01 01122 22 2 23589999999998755 3 38
Q ss_pred CCCCcccHHHHHHHHHhc
Q 046870 208 TSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 208 t~~GKi~R~~l~~~~~~~ 225 (236)
|+++|+.|+.+.+.|++.
T Consensus 630 T~t~K~~R~~i~~~y~~~ 647 (660)
T PLN02430 630 TATLKKRRNNLLKYYQVE 647 (660)
T ss_pred ChhhhhhhHHHHHHHHHH
Confidence 999999999998888764
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=241.04 Aligned_cols=207 Identities=22% Similarity=0.283 Sum_probs=161.6
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCcc-CCcceEEEeCCCCCcccCCCCCceeEEEEecC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPH-LGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
.+|++++++||+||++++++...... ....++|.|+ |++ +++|+|.+++...+.+ ..|||+++|+
T Consensus 484 ~~g~~i~~gYGlTEt~~~~~~~~~~~-----------~~~gsvG~p~~pg~-e~ki~d~~~~~~~~~~--~~GEl~vrGp 549 (746)
T PTZ00342 484 LLNVNYYQGYGLTETTGPIFVQHADD-----------NNTESIGGPISPNT-KYKVRTWETYKATDTL--PKGELLIKSD 549 (746)
T ss_pred hcCCCEEEeeccCcccceeeeccCCC-----------CCcccccCcCCCcE-EEEEecccccccCCCC--CceEEEEecC
Confidence 47899999999999976554322110 2346899998 999 9999985444444433 4599999999
Q ss_pred CcchhhcCCchhhhcccC-CCeEeccceEEEecCCeEEEEccCCCeEE-EcceeeCHHHHHHHHhcCCCcceEEEEeccC
Q 046870 82 TVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSKDIII-SGGENISTIEVESVLFSHPSVLEAAVVGRPD 159 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 159 (236)
+++.|||++|+.|.+.|. ||||+|||+|++|++|+|+|+||.+|+|+ .+|++|+|.+||+.+.++|.|.+++|++...
T Consensus 550 ~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~ 629 (746)
T PTZ00342 550 SIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDS 629 (746)
T ss_pred cccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCC
Confidence 999999999999999985 99999999999999999999999999999 5799999999999999999999999998642
Q ss_pred CCCCceeEEEEEeCCCC--------------CC---CH-----------HH----HH---HHH--HhcCCCCCCccEEEE
Q 046870 160 DHWGETPCAFVKLKDGC--------------VA---NG-----------EE----II---NYC--RDRLPHYMAPRTVVF 202 (236)
Q Consensus 160 ~~~~~~~~~~v~~~~~~--------------~~---~~-----------~~----l~---~~l--~~~l~~~~~p~~i~~ 202 (236)
. ..++++|++.... .. +. .+ +. +.+ +..|..+..++.+++
T Consensus 630 ~---~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l 706 (746)
T PTZ00342 630 M---DGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYL 706 (746)
T ss_pred c---cccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEE
Confidence 2 2478888766310 00 11 01 11 112 225889999999886
Q ss_pred cc--cC----CCCCCcccHHHHHHHHHhcC
Q 046870 203 ED--LP----KTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 203 ~~--lP----~t~~GKi~R~~l~~~~~~~~ 226 (236)
.. |- +|++.|+.|..+.+.|+..-
T Consensus 707 ~~~~~t~~~~lTpt~KlkR~~v~~~y~~~i 736 (746)
T PTZ00342 707 TSKVWDTNNYLTPTFKVKRFYVFKDYAFFI 736 (746)
T ss_pred ecCCCCCCCccChhhhhhHHHHHHHHHHHH
Confidence 54 32 89999999999999888543
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=233.02 Aligned_cols=179 Identities=25% Similarity=0.412 Sum_probs=141.8
Q ss_pred cCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcchhhcCCchhhhcccC------------CCeEeccceEEE
Q 046870 44 RQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD------------GGWFRSGDLGVR 111 (236)
Q Consensus 44 ~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~------------~g~~~TGD~~~~ 111 (236)
++|.|. +. .++|+|++++.+++.+ +.|||+++|+.++.||+++|+.+.+.|. ++||+|||++++
T Consensus 372 ~~g~p~-~~-~~~ivd~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~ 447 (578)
T PRK05850 372 SYGSPR-SP-TVRIVDPDTCIECPAG--TVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFI 447 (578)
T ss_pred eccCCC-CC-EEEEEcCCCCcCCCCC--CEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeE
Confidence 345543 34 8899997678888877 8999999999999999999999988772 579999999999
Q ss_pred ecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCCceeEEEEEeCCCCCCC------HHHHHH
Q 046870 112 HPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN------GEEIIN 185 (236)
Q Consensus 112 ~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~~ 185 (236)
+ +|+|+++||.+|+|+++|++|+|.+||+.|.+++.+. +++++++++ .++.+++++++++....+ ..++.+
T Consensus 448 ~-~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~~-~~v~~v~~~-~~~~~~a~v~~~~~~~~~~~~~~~~~~l~~ 524 (578)
T PRK05850 448 S-EGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGGR-VAAISVPDD-GTEKLVAIIELKKRGDSDEEAMDRLRTVKR 524 (578)
T ss_pred E-CCEEEEEcccccEEEECCeecCHHHHHHHHHHhcCCc-EEEEEecCC-CceEEEEEEEeccccCcchhhhhhHHHHHH
Confidence 8 9999999999999999999999999999999999854 677777765 677889998887653322 234555
Q ss_pred HHHhcCCC--CCCccEEEEc---ccCCCCCCcccHHHHHHHHHhcCCcc
Q 046870 186 YCRDRLPH--YMAPRTVVFE---DLPKTSTGKTQKYVLREKAKAMGSIS 229 (236)
Q Consensus 186 ~l~~~l~~--~~~p~~i~~~---~lP~t~~GKi~R~~l~~~~~~~~~~~ 229 (236)
.+...+.. ...|..+.++ .||+|++||++|++|++++++..-.+
T Consensus 525 ~v~~~l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~~~~~~ 573 (578)
T PRK05850 525 EVTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYRQDEFTR 573 (578)
T ss_pred HHHHHHHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHHcCCccc
Confidence 55444432 2345555444 39999999999999999998765433
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=237.26 Aligned_cols=206 Identities=22% Similarity=0.321 Sum_probs=154.8
Q ss_pred ccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCc
Q 046870 4 LGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTV 83 (236)
Q Consensus 4 ~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~ 83 (236)
++ ++++.||+||+++..+..... .....++|+|++++ +++|+|. ++.......+..|||+|+|+++
T Consensus 452 ~~-~l~~~YG~TEt~~~~~~~~~~-----------~~~~~svG~p~~g~-evkI~d~-~~~~~~~~~~~~GEL~vrG~~v 517 (700)
T PTZ00216 452 FG-MVIQGWGLTETVCCGGIQRTG-----------DLEPNAVGQLLKGV-EMKLLDT-EEYKHTDTPEPRGEILLRGPFL 517 (700)
T ss_pred hh-hHhhccCcccccccccccCCC-----------CCCCCCcCCcCCCe-EEEEeec-hhhccCCCCCCCceEEEcCCcc
Confidence 45 899999999997654432211 01246899999999 9999997 3322211222569999999999
Q ss_pred chhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEE-EcceeeCHHHHHHHHhcCCCcce--EEEEeccC
Q 046870 84 MNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIII-SGGENISTIEVESVLFSHPSVLE--AAVVGRPD 159 (236)
Q Consensus 84 ~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~--~~v~~~~~ 159 (236)
+.|||++|+.|.+.| .+|||+|||+|+++++|.|+|+||.+|+|| .+|++|+|.+||..+.++|.|.+ ++++..+.
T Consensus 518 ~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~ 597 (700)
T PTZ00216 518 FKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPA 597 (700)
T ss_pred cchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecC
Confidence 999999999999988 489999999999999999999999999998 99999999999999999999996 34444332
Q ss_pred CCCCceeEEEEEeCCCC--------C--CCH----------HHHHHHH-----HhcCCCCCCccEEEEcc--c-C----C
Q 046870 160 DHWGETPCAFVKLKDGC--------V--ANG----------EEIINYC-----RDRLPHYMAPRTVVFED--L-P----K 207 (236)
Q Consensus 160 ~~~~~~~~~~v~~~~~~--------~--~~~----------~~l~~~l-----~~~l~~~~~p~~i~~~~--l-P----~ 207 (236)
. ..++++|++.... . .+. +.+.+.+ ++.+..+..++.+++.. | + +
T Consensus 598 ~---~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~l 674 (700)
T PTZ00216 598 R---SYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVL 674 (700)
T ss_pred C---ceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCC
Confidence 2 3577777764321 0 010 1222222 23577888999988754 2 2 6
Q ss_pred CCCCcccHHHHHHHHHhcC
Q 046870 208 TSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 208 t~~GKi~R~~l~~~~~~~~ 226 (236)
|+++|+.|+++.+.|++.-
T Consensus 675 T~t~K~~R~~i~~~y~~~i 693 (700)
T PTZ00216 675 TAAMKLKRRVIDERYADLI 693 (700)
T ss_pred ChhhccchHHHHHHHHHHH
Confidence 9999999999999987653
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=227.20 Aligned_cols=199 Identities=32% Similarity=0.480 Sum_probs=156.2
Q ss_pred ccccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecC
Q 046870 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 2 ~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
+..|++|+++||+|||++.++...... ....++|.|+|++ +++|.|. |||+|+||
T Consensus 374 ~~lGi~i~eGYGlTEts~~~~v~~~~~-----------~~~gtvG~p~p~~-evKI~d~-------------GEilVRG~ 428 (613)
T COG1022 374 RSLGIPILEGYGLTETSAVVSVNPPDR-----------FVLGTVGKPLPGI-EVKIADD-------------GEILVRGP 428 (613)
T ss_pred HHcCCCeEEEecccccccceEEccccC-----------cccCCcCCcCCCc-eEEEccC-------------ceEEEecc
Confidence 356899999999999988776654322 3456899999999 9999986 99999999
Q ss_pred CcchhhcCCchhhhcccC-CCeEeccceEEEecCCeEEEEccCCCeEE-EcceeeCHHHHHHHHhcCCCcceEEEEeccC
Q 046870 82 TVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSKDIII-SGGENISTIEVESVLFSHPSVLEAAVVGRPD 159 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 159 (236)
.++.|||++|+.|++.|. ||||+|||+|.+|++|+|++.||++|+|+ .+|++|.|..||..+..+|.|.+++|++...
T Consensus 429 ~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg~~k 508 (613)
T COG1022 429 NVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDK 508 (613)
T ss_pred hhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEecCC
Confidence 999999999999999997 99999999999999999999999999999 8999999999999999999999999999333
Q ss_pred CCCCceeEEEEEeCCCCCC------------CH------HHHH----HHHHh---cCCCCCCccEEEEcc--cC-----C
Q 046870 160 DHWGETPCAFVKLKDGCVA------------NG------EEII----NYCRD---RLPHYMAPRTVVFED--LP-----K 207 (236)
Q Consensus 160 ~~~~~~~~~~v~~~~~~~~------------~~------~~l~----~~l~~---~l~~~~~p~~i~~~~--lP-----~ 207 (236)
. .+.++|++..+.-. +. .++. ..+.. ....++.+..+.+.. +. .
T Consensus 509 ~----~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~ 584 (613)
T COG1022 509 K----FLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGEL 584 (613)
T ss_pred c----ceEEEEeCCHHHHHHHHHhccccccCCHHHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccCcc
Confidence 3 37788876643110 11 1111 11111 233445555554432 33 6
Q ss_pred CCCCcccHHHHHHHHHhcCCcc
Q 046870 208 TSTGKTQKYVLREKAKAMGSIS 229 (236)
Q Consensus 208 t~~GKi~R~~l~~~~~~~~~~~ 229 (236)
|++-|+.|..+.+.+.......
T Consensus 585 t~t~klkR~~i~~~~~~~i~~~ 606 (613)
T COG1022 585 TPTLKLKRHVILDRYKDEIEAV 606 (613)
T ss_pred ccchhhhHHHHHHhhhhHHHHH
Confidence 8999999999999887765433
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-30 Score=226.73 Aligned_cols=213 Identities=24% Similarity=0.302 Sum_probs=157.9
Q ss_pred eeeecccccccCCCcceeecCCCCCCCCh---------------hHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCC
Q 046870 7 TLTHAYGLTETYGPGTVCVWKPDWNSLPR---------------EEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAK 71 (236)
Q Consensus 7 ~i~~~YG~TE~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~ 71 (236)
.+++.||+||++..++............. ........++|+|++++ .++|+++ ++++++.+
T Consensus 309 ~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~-~~~i~~~-~~~~~~~g-- 384 (545)
T PRK07768 309 AILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGL-EVRVVDE-DGQVLPPR-- 384 (545)
T ss_pred cccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCC-EEEEECC-CCCCCCCC--
Confidence 49999999999765433222111000000 00012345899999999 9999996 88888877
Q ss_pred ceeEEEEecCCcchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcce
Q 046870 72 TIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLE 151 (236)
Q Consensus 72 ~~Gel~v~~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~ 151 (236)
+.|||+++++.++.||++++........+|||+|||+++++++|.++++||.+|+|+.+|.++++.+||..+.+++.|.+
T Consensus 385 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~ 464 (545)
T PRK07768 385 GVGVIELRGESVTPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRP 464 (545)
T ss_pred CEEEEEEccCcccccccCCCCCcccccCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCccccc
Confidence 88999999999999999876555544568899999999999999999999999999999999999999999999999998
Q ss_pred EEEEecc--CCCCCceeEEEEEeCCCCC-CCHHHHHHHHHhcCCCC--CCccEEEEc---ccCCCCCCcccHHHHHHHHH
Q 046870 152 AAVVGRP--DDHWGETPCAFVKLKDGCV-ANGEEIINYCRDRLPHY--MAPRTVVFE---DLPKTSTGKTQKYVLREKAK 223 (236)
Q Consensus 152 ~~v~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~l~~~l~~~l~~~--~~p~~i~~~---~lP~t~~GKi~R~~l~~~~~ 223 (236)
+++++.. +...++.++++++...... ....++.+.+.+.+... ..|..+.++ .||+|++||++|+.|++++.
T Consensus 465 ~~vv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 465 GNAVAVRLDAGHSREGFAVAVESNAFEDPAEVRRIRHQVAHEVVAEVGVRPRNVVVLGPGSIPKTPSGKLRRANAAELVT 544 (545)
T ss_pred ceEEEEEecCCCCceEEEEEEEecccccHHHHHHHHHHHHHHHHHHhCCCccEEEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence 7776654 3334445555555443211 12235666666655433 567777655 39999999999999999874
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=231.51 Aligned_cols=195 Identities=22% Similarity=0.284 Sum_probs=155.1
Q ss_pred CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcch
Q 046870 6 FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMN 85 (236)
Q Consensus 6 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~ 85 (236)
+++++.||+||++++++..... .....++|+|++++ +++|+|. + ..|||+++|++++.
T Consensus 366 ~~l~~~YG~TE~~~~~~~~~~~-----------~~~~~svG~p~pg~-~v~i~d~-~---------~~GEi~vrg~~v~~ 423 (614)
T PRK08180 366 IRMMTGLGMTETAPSATFTTGP-----------LSRAGNIGLPAPGC-EVKLVPV-G---------GKLEVRVKGPNVTP 423 (614)
T ss_pred ceeeeeecccccCCceEecccc-----------cCCCCcccCccCCc-EEEEecC-C---------CCcEEEEecCccch
Confidence 7899999999998655433211 01345899999999 9999875 1 35999999999999
Q ss_pred hhcCCchhhhcccC-CCeEeccceEEE----ecCCeEEEEccCCCeEE-EcceeeC--HHHHHHHHhcCCCcceEEEEec
Q 046870 86 GYLKNLKATQDAFD-GGWFRSGDLGVR----HPDGYIELKDRSKDIII-SGGENIS--TIEVESVLFSHPSVLEAAVVGR 157 (236)
Q Consensus 86 ~y~~~~~~~~~~~~-~g~~~TGD~~~~----~~~g~l~~~GR~~d~i~-~~G~~v~--~~~iE~~l~~~~~v~~~~v~~~ 157 (236)
|||++|+.+.+.|. +|||+|||++++ +++|+|+|+||.+|+|+ .+|++++ +.++|..+.++|.|.+++|++.
T Consensus 424 GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~ 503 (614)
T PRK08180 424 GYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGH 503 (614)
T ss_pred hhcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcC
Confidence 99999999998884 899999999999 46799999999998888 6798776 7788899999999999999998
Q ss_pred cCCCCCceeEEEEEeCCCC---------------CCCHHHHHHHHHhcCCCCC--------CccEEEEcc-cCCC-----
Q 046870 158 PDDHWGETPCAFVKLKDGC---------------VANGEEIINYCRDRLPHYM--------APRTVVFED-LPKT----- 208 (236)
Q Consensus 158 ~~~~~~~~~~~~v~~~~~~---------------~~~~~~l~~~l~~~l~~~~--------~p~~i~~~~-lP~t----- 208 (236)
+++. +.++|++.++. ..+..++.+++.+.+..++ .|+.+.+.+ +|++
T Consensus 504 ~~~~----~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~ 579 (614)
T PRK08180 504 DRDE----IGLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVARALLLDEPPSLDAGEI 579 (614)
T ss_pred CCCc----eEEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhheeEEEEecCCCCCccCcc
Confidence 7654 67888776431 1233567777777666555 898888766 7755
Q ss_pred -CCCcccHHHHHHHHHhcC
Q 046870 209 -STGKTQKYVLREKAKAMG 226 (236)
Q Consensus 209 -~~GKi~R~~l~~~~~~~~ 226 (236)
++||+.|+++.+.|++.-
T Consensus 580 t~~~~~~R~~~~~~y~~~i 598 (614)
T PRK08180 580 TDKGYINQRAVLARRAALV 598 (614)
T ss_pred CccccccHHHHHHHhHHHH
Confidence 677899999999887754
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-29 Score=218.12 Aligned_cols=207 Identities=25% Similarity=0.367 Sum_probs=162.2
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|++|+++||+|||++......... ...+++|.|.|+. +++++|..+.+....+ ..|||||+|+.
T Consensus 442 ~~g~~v~eGYGlTEts~g~~~~~~~d-----------~~lgsvG~p~p~~-~vKL~dvpe~ny~a~~--~~GEIcirG~~ 507 (691)
T KOG1256|consen 442 ALGCRVLEGYGLTETSAGTTLTLPGD-----------NVLGSVGPPVPGN-EVKLVDVPEMNYDADG--SKGEICVRGPN 507 (691)
T ss_pred hcCceeeecccccccCCceEeccCCC-----------CCCCCcCCcccCc-eEEEechHHhCcCcCC--CcceEEEecch
Confidence 35799999999999985444332211 1346899999999 9999887555544444 46999999999
Q ss_pred cchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEE-EcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 83 VMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIII-SGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
++.||+++|+.|.+.+ .|||++|||+|+++.+|.|.+.||++++|| ..|+.|.|..||++..+.+.|.+.+|++.+..
T Consensus 508 Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~ 587 (691)
T KOG1256|consen 508 VFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLR 587 (691)
T ss_pred hceeccCChHHHhhhhccccccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcch
Confidence 9999999999999999 599999999999999999999999999999 89999999999999999999999999987644
Q ss_pred CCCceeEEEEEeCCCCCCCH------------------------HHHHHHHH-hcCCCCCCccEEEEcc----cC---CC
Q 046870 161 HWGETPCAFVKLKDGCVANG------------------------EEIINYCR-DRLPHYMAPRTVVFED----LP---KT 208 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~------------------------~~l~~~l~-~~l~~~~~p~~i~~~~----lP---~t 208 (236)
. .++++|+++++...+. .++.+..+ +.+..+.....+++.+ +. +|
T Consensus 588 ~---~LvaiVvpd~e~~~~~a~~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~Fsiengllt 664 (691)
T KOG1256|consen 588 S---FLVAIVVPDPEVLKSWAAKDGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLT 664 (691)
T ss_pred h---cEEEEEecChhhchhhHHHccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccc
Confidence 3 4888888865421100 11222222 1355667777777654 33 68
Q ss_pred CCCcccHHHHHHHHHhcC
Q 046870 209 STGKTQKYVLREKAKAMG 226 (236)
Q Consensus 209 ~~GKi~R~~l~~~~~~~~ 226 (236)
++-|+.|..+.+.|+...
T Consensus 665 PTlK~KR~~l~~~yk~~I 682 (691)
T KOG1256|consen 665 PTLKIKRPQLLKYYKKQI 682 (691)
T ss_pred hhhhhhhHHHHHHHHHHH
Confidence 899999999999998754
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=210.95 Aligned_cols=172 Identities=23% Similarity=0.308 Sum_probs=145.1
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
+.++++.||+||++.+...... ....++|+|++++ .+++.+. .++.|||++++.
T Consensus 236 ~~~~~~~YG~tE~~~~~~~~~~-------------~~~~~~G~p~~~~-~~~~~~~---------~~~~gel~v~~~--- 289 (414)
T PRK08308 236 TTYMMQQYGCSEAGCVSICPDM-------------KSHLDLGNPLPHV-SVSAGSD---------ENAPEEIVVKMG--- 289 (414)
T ss_pred CChhhhccCccccCCeeecCCC-------------CCCCccCccCCCe-EEEEecC---------CCCCceEEEEcC---
Confidence 4679999999999753322110 1124689999999 8888753 125699999752
Q ss_pred hhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCCc
Q 046870 85 NGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGE 164 (236)
Q Consensus 85 ~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~ 164 (236)
++||+|||+++++++|+++++||.+|+||++|++++|.+||..+.++++|.+++|++.+++..++
T Consensus 290 ---------------~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~ 354 (414)
T PRK08308 290 ---------------DKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGE 354 (414)
T ss_pred ---------------CceEECCceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999998887788
Q ss_pred eeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHH
Q 046870 165 TPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLR 219 (236)
Q Consensus 165 ~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~ 219 (236)
.+.++++... ..+.+++.++++++++++++|..+.+++ ||+|++||++|+.|+
T Consensus 355 ~~~~~v~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~~~ 408 (414)
T PRK08308 355 RVKAKVISHE--EIDPVQLREWCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLLE 408 (414)
T ss_pred eEEEEEEeCC--CCCHHHHHHHHHHhCccccCCcEEEEeccCCCCCCcCeehhhhh
Confidence 8888887664 4678899999999999999999998777 999999999999543
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=221.64 Aligned_cols=195 Identities=22% Similarity=0.285 Sum_probs=147.2
Q ss_pred CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcch
Q 046870 6 FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMN 85 (236)
Q Consensus 6 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~ 85 (236)
+++++.||+||++.++...... .....++|+|++++ +++|++. | +.|||+|+|++++.
T Consensus 378 ~~l~~~YG~TE~~~~~~~~~~~-----------~~~~~svG~p~pg~-~v~i~~~--------G--~~GEl~vrg~~v~~ 435 (624)
T PRK12582 378 IPFYTGYGATETAPTTTGTHWD-----------TERVGLIGLPLPGV-ELKLAPV--------G--DKYEVRVKGPNVTP 435 (624)
T ss_pred ceEEeccccccccceeecccCC-----------CCCCCCCCcCCCCc-EEEEccC--------C--CceEEEEECCcccc
Confidence 6899999999997654422111 02245899999999 9988642 3 67999999999999
Q ss_pred hhcCCchhhhccc-CCCeEeccceEEE-e---cCCeEEEEccCCCeEE-EcceeeCHHHHH--HHHhcCCCcceEEEEec
Q 046870 86 GYLKNLKATQDAF-DGGWFRSGDLGVR-H---PDGYIELKDRSKDIII-SGGENISTIEVE--SVLFSHPSVLEAAVVGR 157 (236)
Q Consensus 86 ~y~~~~~~~~~~~-~~g~~~TGD~~~~-~---~~g~l~~~GR~~d~i~-~~G~~v~~~~iE--~~l~~~~~v~~~~v~~~ 157 (236)
|||++|+.+.+.| .+|||+|||++++ + ++|+|+|+||.+|+|+ .+|++|++.+|| ..+.+||.|.+++|++.
T Consensus 436 GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~ 515 (624)
T PRK12582 436 GYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQ 515 (624)
T ss_pred cccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcC
Confidence 9999999998888 5899999999998 4 4689999999999999 589999998885 67889999999999998
Q ss_pred cCCCCCceeEEEEEeCC----------CC----CCCHHHHHHHHHhc-------CCCCC-CccEEEEcc-cC------CC
Q 046870 158 PDDHWGETPCAFVKLKD----------GC----VANGEEIINYCRDR-------LPHYM-APRTVVFED-LP------KT 208 (236)
Q Consensus 158 ~~~~~~~~~~~~v~~~~----------~~----~~~~~~l~~~l~~~-------l~~~~-~p~~i~~~~-lP------~t 208 (236)
+++.. .++|++.. +. ..+..++.+++.+. ++.+. .|+.+.+.+ +| +|
T Consensus 516 ~~~~~----g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t 591 (624)
T PRK12582 516 DRAFI----GLLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARALLMTEPPSIDAGEIT 591 (624)
T ss_pred CCCcE----EEEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHHHhhcCCChhheEEEEEeCCCCCccCCcCC
Confidence 76653 34433221 10 01223444444444 44555 999887765 55 67
Q ss_pred CCCcccHHHHHHHHHhcC
Q 046870 209 STGKTQKYVLREKAKAMG 226 (236)
Q Consensus 209 ~~GKi~R~~l~~~~~~~~ 226 (236)
++||+.|+++.++|++.-
T Consensus 592 ~~~~~~R~~~~~~y~~~i 609 (624)
T PRK12582 592 DKGYINQRAVLERRAALV 609 (624)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 889999999988887653
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-27 Score=198.97 Aligned_cols=208 Identities=30% Similarity=0.438 Sum_probs=165.3
Q ss_pred ccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCc
Q 046870 4 LGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTV 83 (236)
Q Consensus 4 ~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~ 83 (236)
+.+|+.++||.||+|+.+...... +. ..+.+|.|++.. ++.++|-+++.-.+.+..-.|||+++|+++
T Consensus 426 ~C~Pv~qGYGLTEtca~~tv~e~~---------d~--~~g~vG~pl~c~-eiKLvdw~EgGY~~~~~PPrGEI~i~G~~v 493 (678)
T KOG1180|consen 426 FCCPVLQGYGLTETCAAATVLEPE---------DF--STGRVGAPLPCC-EIKLVDWEEGGYFAKNKPPRGEILIGGPNV 493 (678)
T ss_pred ccccccccccccchhcccEecChh---------hc--ccccccCCccce-EEEEEEhhhcCccCCCCCCCceEEecCCcc
Confidence 467999999999998766554321 11 123799999999 999999766654443322359999999999
Q ss_pred chhhcCCchhhhcccC--CC--eEeccceEEEecCCeEEEEccCCCeEE-EcceeeCHHHHHHHHhcCCCcceEEEEecc
Q 046870 84 MNGYLKNLKATQDAFD--GG--WFRSGDLGVRHPDGYIELKDRSKDIII-SGGENISTIEVESVLFSHPSVLEAAVVGRP 158 (236)
Q Consensus 84 ~~~y~~~~~~~~~~~~--~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 158 (236)
..||+++++.|.+.|. +| ||+|||+|++.+||+|.+.+|++|.+| .+|+.|++.-+|..+...|.|...||++.+
T Consensus 494 t~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~ 573 (678)
T KOG1180|consen 494 TMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADS 573 (678)
T ss_pred ChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEeccc
Confidence 9999999999999883 78 999999999999999999999999999 899999999999999999999999999865
Q ss_pred CCCCCceeEEEEEeCCCCC--------CCH-----------------HHHHHHH-HhcCCCCCCccEEEEcccC------
Q 046870 159 DDHWGETPCAFVKLKDGCV--------ANG-----------------EEIINYC-RDRLPHYMAPRTVVFEDLP------ 206 (236)
Q Consensus 159 ~~~~~~~~~~~v~~~~~~~--------~~~-----------------~~l~~~l-~~~l~~~~~p~~i~~~~lP------ 206 (236)
... .++++|++.+..- .+. ++|.+.- .++|..+.+|..|++.+.|
T Consensus 574 ~~s---~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenG 650 (678)
T KOG1180|consen 574 NKS---KPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPWTPENG 650 (678)
T ss_pred ccc---eeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCCCcCCCcc
Confidence 443 5889998775410 111 2333333 3458889999999987755
Q ss_pred -CCCCCcccHHHHHHHHHhcC
Q 046870 207 -KTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 207 -~t~~GKi~R~~l~~~~~~~~ 226 (236)
.|+.-|+.|+.++..+++..
T Consensus 651 lvT~A~KLKRk~I~~~~k~ei 671 (678)
T KOG1180|consen 651 LVTAALKLKRKEILAAYKKEI 671 (678)
T ss_pred ccHHHHHhhHHHHHHHHHHHH
Confidence 46778999999999887643
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.5e-24 Score=177.45 Aligned_cols=123 Identities=20% Similarity=0.201 Sum_probs=111.2
Q ss_pred cCCCeEeccceEEE-ecCCeEEEEccCCCeEEEcc---eeeCHHHHHHHHhcCCCcceEEEEeccCCCCCceeEEEEEeC
Q 046870 98 FDGGWFRSGDLGVR-HPDGYIELKDRSKDIIISGG---ENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLK 173 (236)
Q Consensus 98 ~~~g~~~TGD~~~~-~~~g~l~~~GR~~d~i~~~G---~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 173 (236)
+.+|||+|||+|++ |++|+|+|+||.+ +| ++|+|. ||+.|.+||+|.+++|++++++.+++.++++|++.
T Consensus 206 ~~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~ 279 (365)
T PRK09188 206 PSRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAE 279 (365)
T ss_pred ccCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEEC
Confidence 36999999999998 6999999999997 77 799999 99999999999999999999999999999999977
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCCcc
Q 046870 174 DGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSIS 229 (236)
Q Consensus 174 ~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~~~ 229 (236)
. ..+..++.++++++|+. ++|..+.+++ ||+|++||++|++|+.++.+....-
T Consensus 280 ~--~~~~~el~~~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~~~~~~l 333 (365)
T PRK09188 280 L--PADEKSLRARLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAMNQIDEL 333 (365)
T ss_pred C--CCCHHHHHHHHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhhcccccc
Confidence 4 36788999999999999 9999998777 9999999999999999875555443
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-24 Score=181.69 Aligned_cols=216 Identities=25% Similarity=0.271 Sum_probs=164.4
Q ss_pred ccccC-eeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCC--------CCcccCCCCCc
Q 046870 2 EELGF-TLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPV--------TMKSVPSDAKT 72 (236)
Q Consensus 2 ~~~g~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~--------~~~~~~~~~~~ 72 (236)
++||. +|.+.||+||......+...+.+.-...+. ..+-+-.+ ++-=+|++ +|-+.+.+.|+
T Consensus 377 ~RFg~~~IgE~YgaTEgn~~~~N~d~~vGA~G~~~~--------~~~~l~p~-~LIk~D~~t~E~iRd~~G~Ci~~~~GE 447 (649)
T KOG1179|consen 377 KRFGIIKIGEFYGATEGNSNLVNYDGRVGACGFMSR--------LLKLLYPF-RLIKVDPETGEPIRDSQGLCIPCPPGE 447 (649)
T ss_pred HHcCCCeEEEEeccccCcceeeeecCccccccchhh--------hhhhccce-EEEEecCCCCceeecCCceEEECCCCC
Confidence 57884 499999999997655554332221110000 11111111 12112222 55566666669
Q ss_pred eeEEE--EecCC---cchhhcCCchhhhccc-------CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHH
Q 046870 73 IGEVM--FRGNT---VMNGYLKNLKATQDAF-------DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVE 140 (236)
Q Consensus 73 ~Gel~--v~~~~---~~~~y~~~~~~~~~~~-------~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE 140 (236)
+|.++ |.... .+.||.+..+.+.++. .|-||.|||+-..|+.|+|||++|..|++..+|++|+..++|
T Consensus 448 pGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe 527 (649)
T KOG1179|consen 448 PGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVE 527 (649)
T ss_pred CceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHH
Confidence 99775 22333 4899999888887764 466999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcceEEEEeccC-CCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHH
Q 046870 141 SVLFSHPSVLEAAVVGRPD-DHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVL 218 (236)
Q Consensus 141 ~~l~~~~~v~~~~v~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l 218 (236)
++|.....++++.|+++.- ...|..-+|.|++.+....+...+.+.+++.||+|..|.++.+.+ +++|.+.|..+..|
T Consensus 528 ~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~~d~~~l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K~~L 607 (649)
T KOG1179|consen 528 DVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTEKDLEKLYQHLRENLPSYARPRFLRLQDEIEKTGTFKLQKTEL 607 (649)
T ss_pred HHHhhhccccceeEEEEecCCccCccceEEEEecCcccchHHHHHHHHHhhCccccchHHHHHHhhhhcccchhhHHHHH
Confidence 9999999999999999974 344566778888888888999999999999999999999998877 99999999999999
Q ss_pred HHHHHhcC
Q 046870 219 REKAKAMG 226 (236)
Q Consensus 219 ~~~~~~~~ 226 (236)
++...+..
T Consensus 608 ~~egf~p~ 615 (649)
T KOG1179|consen 608 QKEGFNPA 615 (649)
T ss_pred HHccCCcc
Confidence 98766444
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-23 Score=179.43 Aligned_cols=142 Identities=31% Similarity=0.418 Sum_probs=118.7
Q ss_pred ccc-CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecC
Q 046870 3 ELG-FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 3 ~~g-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
.++ +++++.||+||+++++........... . . ...++|.|++++ .+.|+++ ++.+++.+ +.|||+++++
T Consensus 257 ~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~----~-~-~~~~~G~~~~~~-~~~i~~~-~~~~~~~g--~~Gel~v~~~ 326 (408)
T TIGR01733 257 RGPGARLINLYGPTETTVWSTATLVDADDAP----R-E-SPVPIGRPLANT-RLYVLDD-DLRPVPVG--VVGELYIGGP 326 (408)
T ss_pred hCCCcEEEecccCCceEEEEEEEEcCccccC----C-c-cccccCcccCCc-eEEEECC-CCCCCCCC--CceEEEecCc
Confidence 455 899999999999876653322211100 0 0 256899999999 9999998 58888877 8899999999
Q ss_pred CcchhhcCCchhhhcccC-------CC--eEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceE
Q 046870 82 TVMNGYLKNLKATQDAFD-------GG--WFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEA 152 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~~-------~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~ 152 (236)
+++.||+++++.+...|. +| ||+|||+++++++|++++.||.+|+|+.+|++++|.+||+.+..++.|.++
T Consensus 327 ~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~ 406 (408)
T TIGR01733 327 GVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREA 406 (408)
T ss_pred cccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhh
Confidence 999999999998887763 23 999999999999999999999999999999999999999999999999887
Q ss_pred EE
Q 046870 153 AV 154 (236)
Q Consensus 153 ~v 154 (236)
+|
T Consensus 407 ~v 408 (408)
T TIGR01733 407 VV 408 (408)
T ss_pred cC
Confidence 64
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.9e-23 Score=176.48 Aligned_cols=181 Identities=24% Similarity=0.349 Sum_probs=125.9
Q ss_pred ccccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccC--CcceEEEeCCCCCcccCCCCCceeEEEEe
Q 046870 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHL--GLDEIDIKDPVTMKSVPSDAKTIGEVMFR 79 (236)
Q Consensus 2 ~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~--~~~~v~i~d~~~~~~~~~~~~~~Gel~v~ 79 (236)
+.||+++++.||+||+++..+.+.+... ..|.+++ .. .++|+|++++.++++| +.|||+++
T Consensus 217 ~~~g~~v~~~YG~tE~~~~~~~~~~~~~--------------~~g~~~~~~~~-~~eivd~~~g~~v~~G--e~Gelvvt 279 (422)
T TIGR02155 217 ARLGMKATDIYGLSEVIGPGVAMECVET--------------QDGLHIWEDHF-YPEIIDPHTGEVLPDG--EEGELVFT 279 (422)
T ss_pred HHhCCceEecccchhhcCCceeeccccc--------------CCCceEecCee-EEEEECCCCCCCCCCC--CeeEEEEe
Confidence 3579999999999998532222111000 0122322 33 7789997689999877 88999998
Q ss_pred cCCcchhhcCCchhhhcccCCCeEeccceEEEecC-C-----eEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcc-eE
Q 046870 80 GNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPD-G-----YIELKDRSKDIIISGGENISTIEVESVLFSHPSVL-EA 152 (236)
Q Consensus 80 ~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~-g-----~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~-~~ 152 (236)
+. +...++.+||+|||+++++++ | .+++.||.+|+|+++|.+|+|.+||..|..++.|. .+
T Consensus 280 ~~------------~~~~~p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~ 347 (422)
T TIGR02155 280 TL------------TKEALPVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHY 347 (422)
T ss_pred cC------------CccccceeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCE
Confidence 73 334456789999999999875 3 46899999999999999999999999999999997 44
Q ss_pred EEEeccCCCCCceeEEEEEeCCCCCC-C--------HHHHHHHHHhcCCCCCCccEEEEc---ccCCCCCCcccHH
Q 046870 153 AVVGRPDDHWGETPCAFVKLKDGCVA-N--------GEEIINYCRDRLPHYMAPRTVVFE---DLPKTSTGKTQKY 216 (236)
Q Consensus 153 ~v~~~~~~~~~~~~~~~v~~~~~~~~-~--------~~~l~~~l~~~l~~~~~p~~i~~~---~lP~t~~GKi~R~ 216 (236)
++. .......+.+.+.|+..++... . .++|.+.+++.+..+. .+.+. .||+|+ ||++|.
T Consensus 348 q~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~v~~~~~~~lp~~~-GK~~~~ 418 (422)
T TIGR02155 348 QLE-LTRNGHMDELTLKVELKPESYTLRLHEQASLLAGEIQHTIKQEVGVSM---DVHLVEPGSLPRSE-GKARRV 418 (422)
T ss_pred EEE-EEcCCCccEEEEEEEEecCcccccchHHHHHHHHHHHHHHHhccCcEE---EEEEECCCCccCCC-CCceEE
Confidence 444 3333334567776666543211 1 3566677777665552 24433 499988 999874
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-22 Score=171.15 Aligned_cols=108 Identities=27% Similarity=0.313 Sum_probs=95.1
Q ss_pred eEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCCceeEEEEEeCCCCCCC--
Q 046870 102 WFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN-- 179 (236)
Q Consensus 102 ~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-- 179 (236)
|++|||+++++++|.|+|+||+||+|+++|++|+|.+||+.|.++|.|.++++.. .++.+.++|++.++....
T Consensus 276 ~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~~~~~~~ 350 (386)
T TIGR02372 276 RLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAEDADEAEL 350 (386)
T ss_pred eeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCCCChHHH
Confidence 6899999999999999999999999999999999999999999999999998863 245688888887643322
Q ss_pred HHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCccc
Q 046870 180 GEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQ 214 (236)
Q Consensus 180 ~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~ 214 (236)
.+++.+++.+++++|+.|..+.+.+ ||+|++||++
T Consensus 351 ~~~l~~~~~~~L~~~~~P~~i~~~~~lP~t~~GKi~ 386 (386)
T TIGR02372 351 EIELRATAARHLPAPARPDRFRFGTELPRTGAGKLA 386 (386)
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence 4688899999999999999998877 9999999984
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-22 Score=171.34 Aligned_cols=116 Identities=35% Similarity=0.604 Sum_probs=98.8
Q ss_pred cccC-eeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecC
Q 046870 3 ELGF-TLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 3 ~~g~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
.++. +|++.||+||++.+++.... ........++|.|++++ +++|+|++++++++.+ +.|||+++|+
T Consensus 300 ~~~~~~i~~~YG~tE~~~~~~~~~~---------~~~~~~~~~~G~~~~~~-~~~ivd~~~~~~~~~g--~~Gei~i~~~ 367 (417)
T PF00501_consen 300 AFGNAPIINLYGSTETGSIATIRPP---------EDDIEKPGSVGKPLPGV-EVKIVDPNTGEPLPPG--EPGEIVIRGP 367 (417)
T ss_dssp HHTTSEEEEEEEEGGGSSEEEEEET---------TTHHSSTTSEBEESTTE-EEEEECTTTSSBESTT--SEEEEEEEST
T ss_pred ccccccceecccccccceeeecccc---------ccccccccccccccccc-cccccccccccccccc--ccccccccCC
Confidence 3454 89999999999887754421 11112345789999999 9999999669999887 8899999999
Q ss_pred CcchhhcCCchhhhcccCC-CeEeccceEEEecCCeEEEEccCCCeEEEc
Q 046870 82 TVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIELKDRSKDIIISG 130 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~~~-g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~ 130 (236)
.++.||+++|+.+.+.|.+ |||+|||+|++|++|+++++||.+|+||++
T Consensus 368 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 368 NVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp TSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred ccceeeeccccccccccccccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 9999999999999998875 899999999999999999999999999974
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-16 Score=137.00 Aligned_cols=186 Identities=18% Similarity=0.153 Sum_probs=112.7
Q ss_pred ccccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCcc--CCcceEEEeCCCCCcccCCCCCceeEEEEe
Q 046870 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPH--LGLDEIDIKDPVTMKSVPSDAKTIGEVMFR 79 (236)
Q Consensus 2 ~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~--~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~ 79 (236)
+.||+++++.||+||++ ++..|... .|..+ +.+ .++|+|++++.+++.| +.|||+++
T Consensus 226 ~~~g~~v~~~YG~TE~~-~~~~c~~~-----------------~g~h~~~d~~-~vEIvDp~~~~~vp~G--e~GELvvT 284 (445)
T TIGR03335 226 ELWGCEVYNTYGSTEGT-MCGECQAV-----------------AGLHVPEDLV-HLDVYDPRHQRFLPDG--ECGRIVLT 284 (445)
T ss_pred HHhCCcEEecCChhhhh-heEEecCC-----------------CCccccCCce-EEEEEcCCCCCCCcCC--CceEEEEE
Confidence 35799999999999985 33333211 12222 234 7999999777888877 89999998
Q ss_pred cCCcchhhcCCchhhhcccCCCeEeccceEEEec-CC--------eEEEEccCCCeEEEcceeeCHHHHHHHHhcC---C
Q 046870 80 GNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHP-DG--------YIELKDRSKDIIISGGENISTIEVESVLFSH---P 147 (236)
Q Consensus 80 ~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~-~g--------~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~---~ 147 (236)
+-... .+...++--.|+|||++++.. +. .+...||.||+++++|.+++|.+||++|.++ +
T Consensus 285 ~L~~~--------~~r~~~PliRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~ 356 (445)
T TIGR03335 285 TLLKP--------GERCGSLLINYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMD 356 (445)
T ss_pred ecCCC--------CccCCceEEEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCC
Confidence 74210 000011112499999999732 22 2455799999999999999999999999995 5
Q ss_pred Ccc-eEEEEeccCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhc----CC-------CCCCccEEEEcc---cCCC-CCC
Q 046870 148 SVL-EAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDR----LP-------HYMAPRTVVFED---LPKT-STG 211 (236)
Q Consensus 148 ~v~-~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~----l~-------~~~~p~~i~~~~---lP~t-~~G 211 (236)
.+. +..++..........+.+.|+..+....+..++.+.+.+. ++ ...+...+.+++ ||++ ..|
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (445)
T TIGR03335 357 SLTGEYEAFLYGEEEGEITLRVSLECEDKDNCSIHDIQENFTGTFLKYKPELIGSYDEGIFQILVNFTGPGELELHKIKG 436 (445)
T ss_pred CCCccEEEEEecCCCCCceEEEEEEecCcccchHHHHHHHHHHHHhhhhhhhhhhhhcceEEEEEEEeCCCCccccccCC
Confidence 554 3334332222223356666676554333333333333332 21 112222333333 9998 368
Q ss_pred cccHH
Q 046870 212 KTQKY 216 (236)
Q Consensus 212 Ki~R~ 216 (236)
|..|-
T Consensus 437 k~~r~ 441 (445)
T TIGR03335 437 RPKRL 441 (445)
T ss_pred Cceee
Confidence 87763
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.9e-16 Score=131.93 Aligned_cols=182 Identities=23% Similarity=0.345 Sum_probs=124.4
Q ss_pred ccccCeeeecccccccCCCc-ceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEec
Q 046870 2 EELGFTLTHAYGLTETYGPG-TVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRG 80 (236)
Q Consensus 2 ~~~g~~i~~~YG~TE~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~ 80 (236)
++||+.+++.||+||..+++ ..|......+ .+.+...++|+|+++|..++.| +.|||++++
T Consensus 232 ~~~g~~~~diYGltE~~g~g~~eC~~~~glh----------------i~eD~~~~Ei~dP~t~e~l~dg--e~GelV~T~ 293 (438)
T COG1541 232 NRFGCKAFDIYGLTEGFGPGAGECTERNGLH----------------IWEDHFIFEIVDPETGEQLPDG--ERGELVITT 293 (438)
T ss_pred HHhCCceeeccccccccCCcccccccccCCC----------------cchhhceeeeecCCcCccCCCC--CeeEEEEEe
Confidence 57899999999999997764 4444333222 2222338999999999999998 889999987
Q ss_pred CCcchhhcCCchhhhcccCCCeEeccceEEEecCCe---------EEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcc-
Q 046870 81 NTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGY---------IELKDRSKDIIISGGENISTIEVESVLFSHPSVL- 150 (236)
Q Consensus 81 ~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~---------l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~- 150 (236)
-. ...++-=.|+|||+..+.++.+ ..+.||.||++.+.|.+|+|..||..|.+.+.+.
T Consensus 294 L~------------~~~~PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~ 361 (438)
T COG1541 294 LT------------KEGMPLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTP 361 (438)
T ss_pred cc------------ccCcceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCc
Confidence 22 2222223599999999987432 5699999999999999999999999999999998
Q ss_pred eEEEEeccCCCCCceeEEEEEeCCCCCC--CHHHHHHHHHhcCCC-CCCccEEEEc---ccCCCCCCcccH
Q 046870 151 EAAVVGRPDDHWGETPCAFVKLKDGCVA--NGEEIINYCRDRLPH-YMAPRTVVFE---DLPKTSTGKTQK 215 (236)
Q Consensus 151 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~l~~~l~~-~~~p~~i~~~---~lP~t~~GKi~R 215 (236)
+..++... ....+.+.+-|++.++... +..++...+.+.+.. ......+.++ .+|+|. ||..|
T Consensus 362 ~yqi~~~~-~~~~d~L~V~vE~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~v~~g~l~r~~-~K~kr 430 (438)
T COG1541 362 HYQIILTR-NGGLDELTVRVELENEAEELEDERRLAKKLIKNIKSELGVRVEVELVEPGELPRTE-GKAKR 430 (438)
T ss_pred eEEEEEec-CCCCceEEEEEEecCcccchHHHHHHHHHHHHHHHhhcCCceEEEEEeccceeccc-CceeE
Confidence 66666655 4455678888888764111 122222333333221 2222333333 399995 46554
|
|
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.8e-16 Score=143.08 Aligned_cols=130 Identities=30% Similarity=0.418 Sum_probs=114.4
Q ss_pred CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCCceeEEEEEeCCCCCC-
Q 046870 100 GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVA- 178 (236)
Q Consensus 100 ~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~- 178 (236)
+..|+|||+++...+|.+.+.||.|++||.+|.++.+.+|+..+..+|.|.++......+...++.+++|++.......
T Consensus 453 ~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~ 532 (1032)
T KOG1178|consen 453 ARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSV 532 (1032)
T ss_pred hhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCch
Confidence 5589999999998899999999999999999999999999999999999999999999888778899999998865433
Q ss_pred CHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCCcc
Q 046870 179 NGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSIS 229 (236)
Q Consensus 179 ~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~~~ 229 (236)
....|++++..+|+.|++|..++..+ +|+|++|||++++|......+.+.-
T Consensus 533 ~~~~i~~~l~~~La~y~vPs~~V~l~~vPl~~~GKvDkkaL~~~~s~~~~~~ 584 (1032)
T KOG1178|consen 533 LIRDIRNYLKKELASYMLPSLVVPLAKVPLNPNGKVDKKALLEYNSKLTNVQ 584 (1032)
T ss_pred hHHHHHHhhcccccceecceEEEEhhhCCcCCCCCcChhhhhhhhhhhcccc
Confidence 34779999999999999999888666 9999999999999999444444433
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=139.73 Aligned_cols=179 Identities=16% Similarity=0.142 Sum_probs=127.6
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCC-CCCcccCCCCCceeEEEEecCCc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP-VTMKSVPSDAKTIGEVMFRGNTV 83 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~-~~~~~~~~~~~~~Gel~v~~~~~ 83 (236)
++++..+||+||+. +..... .. ...|.|+|++ +++|.+. +.+. .. ..|||++++
T Consensus 778 ~i~i~~g~glTE~~---~~~~~~---------~~----~~~G~Plpgv-EvKI~~~~E~~~--~~---~~GEIlvr~--- 832 (1452)
T PTZ00297 778 HISVCYVPCLREVF---FLPSEG---------VF----CVDGTPAPSL-QVDLEPFDEPSD--GA---GIGQLVLAK--- 832 (1452)
T ss_pred CceEEEecceEEee---eecCCC---------Cc----ccCCeecCce-EEEEcccccccC--CC---CCCeEEEEE---
Confidence 57788999999953 111111 00 1239999999 9999874 2222 11 349999953
Q ss_pred chhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEE-EcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 84 MNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIII-SGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 84 ~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
+++|+.|.+. .+||+ .+|.|+|.||++|+|| .+|++|.|..||+.+.++|.|.+++|++.+...
T Consensus 833 ----~kdpe~T~e~-~~gW~---------~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k~- 897 (1452)
T PTZ00297 833 ----KGEPRRTLPI-AAQWK---------RDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRP- 897 (1452)
T ss_pred ----CCChHHHHHh-hCcCc---------cCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCCc-
Confidence 5889988874 35664 5899999999999999 899999999999999999999999999876543
Q ss_pred CceeEEEEEeCCCCC-------------------CCHHH--------HHHHH---Hh--cCCCCCCccEEEEcc--c---
Q 046870 163 GETPCAFVKLKDGCV-------------------ANGEE--------IINYC---RD--RLPHYMAPRTVVFED--L--- 205 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~-------------------~~~~~--------l~~~l---~~--~l~~~~~p~~i~~~~--l--- 205 (236)
++++|++..... .+..+ +.+.+ .+ .+..+.+++.+++.+ |
T Consensus 898 ---lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~e 974 (1452)
T PTZ00297 898 ---IIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDH 974 (1452)
T ss_pred ---eEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHHHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCC
Confidence 788887663211 02222 22222 11 255678888776643 4
Q ss_pred --CCCCCCcccHHHHHHHHHhcC
Q 046870 206 --PKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 206 --P~t~~GKi~R~~l~~~~~~~~ 226 (236)
-+|++.|+.|..+.+.|++.-
T Consensus 975 nGlLTPTlKlKR~~I~~kY~~~I 997 (1452)
T PTZ00297 975 STFLTPYGKIRRDAVHSYFSSVI 997 (1452)
T ss_pred CCcCChhhhhhHHHHHHHHHHHH
Confidence 279999999999999887654
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=131.99 Aligned_cols=130 Identities=25% Similarity=0.340 Sum_probs=110.6
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
...+.+.||.||+...+........... ..++|.|.++. .+.|.|. .++++|.+ ..||+++.|..+.
T Consensus 512 ~~~l~~~ygpTe~~~~~~~~~~~~~~~~---------~~piG~p~~n~-~~~ild~-~~~~~p~g--v~gel~i~g~~~a 578 (642)
T COG1020 512 ARRLLNLYGPTEATLDAPSFPISAELES---------RVPIGRPVANT-QLYILDQ-GLRPLPLG--VPGELYIAGLGLA 578 (642)
T ss_pred cceEeeccCccHHhhheeeEEcccccCC---------CCCcceeeCCC-eEEEECC-CCCcCCCC--CCeeeEECCcchh
Confidence 3579999999996544443332221110 35799999998 9999995 89999998 7899999999999
Q ss_pred hhhcCCchhhhcccCCC-eEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCC
Q 046870 85 NGYLKNLKATQDAFDGG-WFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHP 147 (236)
Q Consensus 85 ~~y~~~~~~~~~~~~~g-~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 147 (236)
+||+++|+.|...|... +|+|||+++...+|.+.++||.|+.+|++|.++.+.+||..+.+++
T Consensus 579 ~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 579 LGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP 642 (642)
T ss_pred hhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence 99999999999998664 9999999999999999999999999999999999999999998764
|
|
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.8e-12 Score=82.37 Aligned_cols=69 Identities=58% Similarity=0.979 Sum_probs=59.3
Q ss_pred HHHHHHhcCCCcceEEEEeccCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEE---cc-cCCCCCCc
Q 046870 138 EVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVF---ED-LPKTSTGK 212 (236)
Q Consensus 138 ~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~---~~-lP~t~~GK 212 (236)
+||+.+.++|+|.+++|++.+++.+++.+++++++ +..+|.++++++|++|+.|+.+.+ .+ ||+|++||
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~------~~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~~GK 73 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL------DEEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTPSGK 73 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE------HHHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBETTSS
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe------eecccccchhhhCCCcceeeEEEEccccCcCCCCCCCC
Confidence 68999999999999999999988888999999998 448999999999999999954433 36 99999998
|
... |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-10 Score=104.56 Aligned_cols=170 Identities=17% Similarity=0.213 Sum_probs=123.6
Q ss_pred CCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcchhhcCCc-hhhhccc----------CCCeEeccceEEEec
Q 046870 45 QGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNL-KATQDAF----------DGGWFRSGDLGVRHP 113 (236)
Q Consensus 45 ~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~~y~~~~-~~~~~~~----------~~g~~~TGD~~~~~~ 113 (236)
.|...+++ ++.|+.+++-.++..+ +.||||+.+..-+.+|+.-. +.....| ..+|-||||+|++..
T Consensus 1155 SG~~~~~~-~i~IvnPEtk~pc~dg--e~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~ 1231 (1363)
T KOG3628|consen 1155 SGKLPVYT-DIAIVNPETKGPCRDG--ELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRR 1231 (1363)
T ss_pred CCcccccc-eeEEeCCccccccccC--CcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeee
Confidence 47777777 9999999888888777 89999999987666665421 1111111 245999999999943
Q ss_pred ------C----CeEEEEccCCCeEEEcceeeCHHHHHHHHh-cCCCcceEEEEeccCCCCCceeEEEEEeCCCCCCCHHH
Q 046870 114 ------D----GYIELKDRSKDIIISGGENISTIEVESVLF-SHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEE 182 (236)
Q Consensus 114 ------~----g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 182 (236)
+ ..||++|-.++.+..+|.+.+|.+||.-+. .|+.|.+++++.... .+++++++... .....
T Consensus 1232 t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~g-----lvVvviE~~gq--~~~~~ 1304 (1363)
T KOG3628|consen 1232 TSLTDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQATG-----LVVVVIECHGQ--QELAD 1304 (1363)
T ss_pred eecccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEeeCC-----eEEEEEEecCc--hhHhh
Confidence 2 249999999999999999999999998776 459999999987543 36666666652 33344
Q ss_pred HHHHHH-hcCCCCCCccEE-EEcc---cCCCCCCcccHHHHHHHHHh
Q 046870 183 IINYCR-DRLPHYMAPRTV-VFED---LPKTSTGKTQKYVLREKAKA 224 (236)
Q Consensus 183 l~~~l~-~~l~~~~~p~~i-~~~~---lP~t~~GKi~R~~l~~~~~~ 224 (236)
|.-.+. ..|..+.+...+ .|++ ||+++.|-.+|..+++.+..
T Consensus 1305 LvPlIv~~vL~eH~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~ 1351 (1363)
T KOG3628|consen 1305 LVPLIVNVVLEEHYIILDVVAFVDKGVFPRNSRGEKQRAHILDSWLA 1351 (1363)
T ss_pred hhHHHHHHHHhhcceEEEEEEEecCCccccCCchhhHHHHHHHHHHh
Confidence 433333 345556555544 4666 99999999999999876654
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-08 Score=88.30 Aligned_cols=127 Identities=17% Similarity=0.165 Sum_probs=78.1
Q ss_pred ccccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEE--EeCCCCCcccCCCCCceeEEEEe
Q 046870 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEID--IKDPVTMKSVPSDAKTIGEVMFR 79 (236)
Q Consensus 2 ~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~--i~d~~~~~~~~~~~~~~Gel~v~ 79 (236)
+.||+++++.||+|| |.++..|. +...+. ......++ ++|+ ++. ++.+|+
T Consensus 234 ~~fg~~V~~~YG~tE-g~la~eC~-~g~lHl----------------~ed~~~vE~~ivD~-~~~---------~~~ViT 285 (430)
T TIGR02304 234 NVFKNTVHQIYQATE-GFLASTCR-CGTLHL----------------NEDLVHIEKQYLDE-HKR---------FVPIIT 285 (430)
T ss_pred HHhCCCeeEccCCch-hheEEecC-CCCEEE----------------ccccEEEEeeEECC-CCc---------eEEEEe
Confidence 468999999999999 55554442 212221 12211444 7786 332 344666
Q ss_pred cCC-cchhhcCCchhhhcccCCCeEeccceEEEecCCe--------E-EEEccCCCeEEE---cc--eeeCHHHHHHHHh
Q 046870 80 GNT-VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGY--------I-ELKDRSKDIIIS---GG--ENISTIEVESVLF 144 (236)
Q Consensus 80 ~~~-~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~--------l-~~~GR~~d~i~~---~G--~~v~~~~iE~~l~ 144 (236)
+-. -....+ .|+|||++....+.| + .+.||.+|+++. +| ..++|..++..+.
T Consensus 286 ~L~n~~~PlI-------------RYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~ 352 (430)
T TIGR02304 286 DFTRTTQPIV-------------RYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVIL 352 (430)
T ss_pred cCCCccceEE-------------eeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHH
Confidence 521 222222 499999988855422 3 388999999984 34 4558999988744
Q ss_pred -cCCCcceEEEEeccCCCCCceeEEEEEeC
Q 046870 145 -SHPSVLEAAVVGRPDDHWGETPCAFVKLK 173 (236)
Q Consensus 145 -~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 173 (236)
..+.|.+..++..... .+.+.++..
T Consensus 353 ~~~~~i~~yQi~Q~~~~----~l~v~~~~~ 378 (430)
T TIGR02304 353 FTLPLIVEYRVLQTGSA----QLELIADCE 378 (430)
T ss_pred hcCCCCceEEEEEccCC----eEEEEEEeC
Confidence 5688999888864322 345555443
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.2e-06 Score=76.87 Aligned_cols=171 Identities=16% Similarity=0.195 Sum_probs=111.8
Q ss_pred cCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcchhhcCCchhhhccc------------C-CCeEeccceEE
Q 046870 44 RQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF------------D-GGWFRSGDLGV 110 (236)
Q Consensus 44 ~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~------------~-~g~~~TGD~~~ 110 (236)
.+|...++-..+.|+++++.+.+..+ ++|||||.+++....||.-+..|...| . .-+.+||=+|+
T Consensus 503 d~~~i~~g~~t~~vv~~~t~~LC~~~--eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGF 580 (1363)
T KOG3628|consen 503 DVLCIMPGDATLAVVNPDTNQLCKTD--EVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGF 580 (1363)
T ss_pred ccceecccceEEEEeCCCcccccccC--cceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceee
Confidence 35555555547788888788888888 999999999999999998877666655 1 12789999999
Q ss_pred EecCCeEEEEccCCCeEE-EcceeeCHHHHH----------HHHhcCCCcceEEEEeccCCCCCceeEEEEEeCCCCCC-
Q 046870 111 RHPDGYIELKDRSKDIII-SGGENISTIEVE----------SVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVA- 178 (236)
Q Consensus 111 ~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE----------~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~- 178 (236)
+. +|.++|+|-++|.+. ..|-..+..+|- -+.+....|-++.++- .++++++++.++....
T Consensus 581 v~-~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~------~E~~~Vv~~esP~a~e~ 653 (1363)
T KOG3628|consen 581 VH-NGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE------DEHIVVVVLESPDATEE 653 (1363)
T ss_pred ee-CCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee------cceEEEEEEeCcchhhh
Confidence 99 777777776666665 677666544442 2333445566666664 3456666666665311
Q ss_pred CH----HHHHHHHHhcCCCCCCc-cEEEEcc---cCCCCCCcccHHHHHHHHHhcC
Q 046870 179 NG----EEIINYCRDRLPHYMAP-RTVVFED---LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 179 ~~----~~l~~~l~~~l~~~~~p-~~i~~~~---lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
+. .++.+.+.. -+.+- --+.+++ ||||+.|-|.-.+.+++|.+-+
T Consensus 654 ~~~q~~~~v~q~l~~---iHqv~vyCilivP~~tLPrt~~~Gi~~~~~k~~F~~G~ 706 (1363)
T KOG3628|consen 654 NSFQWMSRVFQALDS---IHQVGVYCILIVPANTLPRTPLGGIHNNECKQAFLEGS 706 (1363)
T ss_pred hhhhHHHHHHHHHHH---HhcccceEEEEeccccCCCccccccccHHHHHHHHcCC
Confidence 11 122233322 12222 2223333 9999988899999999887643
|
|
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=97.82 E-value=6.3e-05 Score=51.37 Aligned_cols=81 Identities=25% Similarity=0.324 Sum_probs=48.5
Q ss_pred ceeeCHHHHHHHHhcCCCcceEEEEeccCCCCCceeEEEEEeCCCCCC---CH----HHHHHHHHhcCCCCCCccEEEEc
Q 046870 131 GENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVA---NG----EEIINYCRDRLPHYMAPRTVVFE 203 (236)
Q Consensus 131 G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~----~~l~~~l~~~l~~~~~p~~i~~~ 203 (236)
|.+++|.+||+++.++|++.....+........+.+.+.|++.++... +. +++.+.+++.+.- .| .+.++
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv--~~-~V~lv 77 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGV--RP-EVELV 77 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS---E-EEEEE
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCc--eE-EEEEE
Confidence 789999999999999999984443344444456788888888886432 12 3444555554432 23 44444
Q ss_pred c---cCCCCCCcccH
Q 046870 204 D---LPKTSTGKTQK 215 (236)
Q Consensus 204 ~---lP~t~~GKi~R 215 (236)
+ ||++ .||..|
T Consensus 78 ~~gtLpr~-~~K~~R 91 (96)
T PF14535_consen 78 PPGTLPRS-EGKAKR 91 (96)
T ss_dssp -TT-S----SSSS-S
T ss_pred CCCCccCC-CCcceE
Confidence 3 9998 578766
|
|
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00022 Score=63.74 Aligned_cols=104 Identities=19% Similarity=0.218 Sum_probs=69.0
Q ss_pred CceeEEEEecCCcchhhcCCchhhhcccCCCeEeccceEEEec--CC--eEEEEccCCCeEEEcceeeCHHHHHHHHhcC
Q 046870 71 KTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHP--DG--YIELKDRSKDIIISGGENISTIEVESVLFSH 146 (236)
Q Consensus 71 ~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~--~g--~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 146 (236)
|+.-||+|++. .|+|+ |+.||+++... ++ .+.|+||.+.++.+.|+++.-..+++.+.+.
T Consensus 355 G~~YelviTt~---~GLyR-------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~ 418 (528)
T PF03321_consen 355 GEEYELVITTN---SGLYR-------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARA 418 (528)
T ss_dssp T-EEEEEEEST---TS-SS-------------EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHH
T ss_pred CCeEEEEEecc---cceee-------------eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHH
Confidence 36778989774 34555 99999999965 45 7999999999999999999999999888876
Q ss_pred -----CCcceEEEEeccCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcC
Q 046870 147 -----PSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRL 191 (236)
Q Consensus 147 -----~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l 191 (236)
-.+.+..+............+.++++... ..+.+++.+.|.+.|
T Consensus 419 ~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~-~~~~~~~~~~lD~~L 467 (528)
T PF03321_consen 419 LQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE-PDDLEELAKALDESL 467 (528)
T ss_dssp HHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS--HHHHHHHHHHHHHCS
T ss_pred HHhcCCceeeEEEEeecccCCCCceEEEEEeCCC-chHHHHHHHHHHHHh
Confidence 22566666655322233356677777764 223456666666666
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00017 Score=61.32 Aligned_cols=95 Identities=25% Similarity=0.379 Sum_probs=63.4
Q ss_pred cccC----eeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEE
Q 046870 3 ELGF----TLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMF 78 (236)
Q Consensus 3 ~~g~----~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v 78 (236)
.||+ .+++.||+||.......+... -...|. .|.|.|+++..+++.| +.|-|.+
T Consensus 251 ~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~------------------~~~~p~--wV~iRDp~tl~~~~~G--e~Gli~v 308 (365)
T PF04443_consen 251 VFGVIPIENIYDMYGMTELNSQAYECGHG------------------HFHVPP--WVIIRDPETLEPLPPG--ETGLIQV 308 (365)
T ss_pred HHCCCCHHHeeeeeeccccchhheeCCCC------------------cccCCC--eEEEECCCCCcCCCCC--CeeEEEE
Confidence 4777 699999999987655444211 112233 3677799888999887 8899988
Q ss_pred ecCCcchhhcCCchhhhcccCCCeEeccceEEEecC--------CeEEEEccCCCeEEEccee
Q 046870 79 RGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPD--------GYIELKDRSKDIIISGGEN 133 (236)
Q Consensus 79 ~~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~--------g~l~~~GR~~d~i~~~G~~ 133 (236)
-.+... .| -+.+-|.|+|.+..+ .++.++||.+.. .++|..
T Consensus 309 idl~~~-s~------------p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~a-e~RGCs 357 (365)
T PF04443_consen 309 IDLANT-SY------------PGFILTEDLGVLHGDDDCGCRKGKYFEVLGRADGA-EIRGCS 357 (365)
T ss_pred Eccccc-CC------------CcEEEEcceeeecCCCCCCCccCCEEEEEeCCCCC-ccCCcH
Confidence 664321 11 233779999988654 279999998732 345543
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.015 Score=52.40 Aligned_cols=59 Identities=10% Similarity=0.188 Sum_probs=46.7
Q ss_pred ceeEEEEecCCcchhhcCCchhhhcccCCCeEeccceEEEec----CCeEEEEccCCCeEEEcceeeCHHHHHHHHhcC
Q 046870 72 TIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHP----DGYIELKDRSKDIIISGGENISTIEVESVLFSH 146 (236)
Q Consensus 72 ~~Gel~v~~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 146 (236)
+.=||+|+. +.|+|+ |+.||+.+... --.|.|++|.+.+..+.|++..-.++...+.+.
T Consensus 402 ~~YelVvTt---~~GLYR-------------YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a 464 (606)
T PLN02247 402 HYYELVVTT---FTGLYR-------------YRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQA 464 (606)
T ss_pred CeEEEEEEe---cCceEE-------------EecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHHH
Confidence 666888866 233443 99999998853 346999999999999999999999998777764
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.056 Score=48.88 Aligned_cols=59 Identities=12% Similarity=0.175 Sum_probs=46.4
Q ss_pred ceeEEEEecCCcchhhcCCchhhhcccCCCeEeccceEEEec----CCeEEEEccCCCeEEEcceeeCHHHHHHHHhcC
Q 046870 72 TIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHP----DGYIELKDRSKDIIISGGENISTIEVESVLFSH 146 (236)
Q Consensus 72 ~~Gel~v~~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 146 (236)
+.=||+|+.. .|+|+ |+.||+.+... .-.|.|++|.+.+..+.|++..-.++...+.+.
T Consensus 408 ~~YelvvTt~---~GLyR-------------YrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a 470 (612)
T PLN02620 408 QEYELVVTTY---AGLYR-------------YRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNA 470 (612)
T ss_pred CeEEEEEEec---CceEE-------------EecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHH
Confidence 6678888662 33443 99999999853 346999999999999999999999987766654
|
|
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.83 Score=41.65 Aligned_cols=58 Identities=10% Similarity=0.184 Sum_probs=47.6
Q ss_pred ceeEEEEecCCcchhhcCCchhhhcccCCCeEeccceEEEec----CCeEEEEccCCCeEEEcceeeCHHHHHHHHhc
Q 046870 72 TIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHP----DGYIELKDRSKDIIISGGENISTIEVESVLFS 145 (236)
Q Consensus 72 ~~Gel~v~~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 145 (236)
+.=+|+|++ ..|+|+ |+.||+++... .-.|.|+||.+.++.+.|+++.-.+++..+.+
T Consensus 395 ~~Y~lVvTT---~~GLyR-------------Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 395 KEYELVITT---YAGLYR-------------YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN 456 (597)
T ss_pred CeEEEEEEc---ccceeE-------------eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence 566888866 334554 99999999965 23699999999999999999999999987776
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 236 | ||||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 4e-33 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 1e-31 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 8e-23 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 9e-23 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 1e-22 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 4e-22 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 1e-21 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 1e-20 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 2e-20 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 7e-20 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 7e-20 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 8e-20 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 1e-19 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 1e-19 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 1e-19 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 4e-19 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 4e-19 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 9e-19 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 1e-18 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 2e-18 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 2e-18 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 2e-18 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 2e-18 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 4e-18 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 4e-18 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 4e-18 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 4e-18 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 5e-18 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 8e-18 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 3e-17 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 3e-17 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 1e-16 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 7e-15 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 4e-14 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 7e-13 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 7e-13 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 7e-13 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 7e-13 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 8e-13 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 3e-12 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 4e-12 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 5e-12 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 2e-11 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 3e-10 | ||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 4e-07 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 5e-07 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 1e-06 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 2e-06 | ||
| 3pbk_A | 583 | Structural And Functional Studies Of Fatty Acyl-Ade | 1e-05 | ||
| 3l8c_A | 521 | Structure Of Probable D-Alanine--Poly(Phosphoribito | 2e-05 |
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 | Back alignment and structure |
|
| >pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 384 bits (988), Expect = e-133
Identities = 84/227 (37%), Positives = 119/227 (52%), Gaps = 4/227 (1%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
E +G + YGLTET K SL EE+ +KA+ G+P + + + D
Sbjct: 313 FERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADE 371
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIEL 119
+ VP D K +GEV +G + GY N +AT+ A G+FR+GD+ V +GY+E+
Sbjct: 372 -EGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEI 430
Query: 120 KDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN 179
KDR KD+I SGGE IS++++E+ L HP V EAAVV P W E P A V +
Sbjct: 431 KDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTP 490
Query: 180 GEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKAM 225
E + + + P VF E++P+TS GK K LRE+ K
Sbjct: 491 EELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY 537
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 262 bits (673), Expect = 7e-86
Identities = 78/222 (35%), Positives = 115/222 (51%), Gaps = 16/222 (7%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
+ Y LTE+ G GT+ L E+ + G + ++ ++
Sbjct: 304 YAAKNIEVVQGYALTESCGGGTL---------LLSEDALRKAGSAGRATMFT-DVAVRGD 353
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
GEV+ + + ++ Y +AT+DAFD GWFR+GD+G +GY+ +K
Sbjct: 354 -DGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIK 409
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DR KD+IISGGEN+ E+ESV+ P V E AV+G PD+ WGE A V V+
Sbjct: 410 DRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEVS-E 468
Query: 181 EEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREK 221
++I+ YC RL Y P+ V+F E +P+ TGK K VLRE+
Sbjct: 469 QQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQ 510
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 262 bits (672), Expect = 7e-86
Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 22/225 (9%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
+ + +++G+TET P A+ G+P + ++ IK+P
Sbjct: 294 ALQYNLPIYNSFGMTETCSQFLTA--------TPEMLHARPDT-VGMPSANV-DVKIKNP 343
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
+ + GE+M +G VMNGYL T F+ G+F +GD+ +GY+ +
Sbjct: 344 --------NKEGHGELMIKGANVMNGYLYPTDLTG-TFENGYFNTGDIAEIDHEGYVMIY 394
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
DR KD+IISGGENI ++E+V P + +A VG PDD WG+ P + + +
Sbjct: 395 DRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD--ISK 452
Query: 181 EEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKA 224
++I Y L Y P+ + LP TSTGK Q+ L +
Sbjct: 453 AQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH 497
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 254 bits (651), Expect = 1e-82
Identities = 57/227 (25%), Positives = 93/227 (40%), Gaps = 18/227 (7%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
+ L + YG TE + K + P E+ I
Sbjct: 293 HQHLPGEKVNIYGTTEAMNSLYMRQPKTGT--------------EMAPGFFS-EVRIVRI 337
Query: 61 VTMKSVPSDAKTIGEVMFRG-NTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIEL 119
GE++ ++ GYL +AT + GW+R+ D+ V P+G + +
Sbjct: 338 GGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRI 397
Query: 120 KDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN 179
R D+IISGGENI E+E VL + P V E V+G D WG++ A V + G +
Sbjct: 398 LGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLS 457
Query: 180 GEEIINYCR-DRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKA 224
+ + +CR L + P+ + LPK + K + L ++ +
Sbjct: 458 ADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVSS 504
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 252 bits (647), Expect = 5e-82
Identities = 66/221 (29%), Positives = 99/221 (44%), Gaps = 21/221 (9%)
Query: 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKAR-QGVPHLGLDEIDIKDPVTM 63
T +G +ET G T P + + + G P + + D
Sbjct: 295 NATFWATFGQSETSGLSTF---------APYRD----RPKSAGRPLFWR-TVAVVDA-ED 339
Query: 64 KSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRS 123
+ +P +GE++ RG TV GY N ATQ AF GW +GD+G DGY+ R+
Sbjct: 340 RPLPPG--EVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRA 397
Query: 124 --KDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGE 181
K++I +GGEN+ EVE L HP++ +A V+G PD W E A K G +
Sbjct: 398 PEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAAD 457
Query: 182 EIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREK 221
+ + + Y P+ VVF E LPK + G + ++
Sbjct: 458 ALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTA 498
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 239 bits (611), Expect = 9e-77
Identities = 71/226 (31%), Positives = 111/226 (49%), Gaps = 16/226 (7%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPV 61
+ G + YG+TET T S P + A G G+ + DP
Sbjct: 290 AKTGHAVLERYGMTET-NMNT---------SNPYDGDRVPGA-VGPALPGV-SARVTDPE 337
Query: 62 TMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELK 120
T K +P IG + +G V GY + + T+ F G+F +GDLG GY+ +
Sbjct: 338 TGKELPRG--DIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHIL 395
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
R KD++I+GG N+ E+ES + + P V+E+AV+G P +GE A V G +
Sbjct: 396 GRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDE 455
Query: 181 EEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKAM 225
++++ +L + P+ V+F +DLP+ + GK QK VLRE K +
Sbjct: 456 AQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 236 bits (604), Expect = 1e-74
Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 18/227 (7%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
E+G L +G+ E G V + D E KI QG P DE+ + D
Sbjct: 323 PAEIGCQLQQVFGMAE----GLVNYTRLD---DSAE---KIIHTQGYPMCPDDEVWVADA 372
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIEL 119
+P +G +M RG GY K+ + AFD G++ SGDL P+GYI +
Sbjct: 373 -EGNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITV 429
Query: 120 KDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN 179
+ R KD I GGE I+ E+E++L HP+V+ AA+V D+ GE CA++ +K+
Sbjct: 430 QGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEP--LR 487
Query: 180 GEEIINYCRDR-LPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKA 224
++ + R++ + + P V + LP T+ GK K LR+ +
Sbjct: 488 AVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 534
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 234 bits (599), Expect = 2e-74
Identities = 69/226 (30%), Positives = 99/226 (43%), Gaps = 15/226 (6%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
E L L +G+ E G V + D E +I QG P DEI I D
Sbjct: 328 PEVLNCKLQQVFGMAE----GLVNYTRLDD---SDE---QIFTTQGRPISSDDEIKIVDE 377
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIEL 119
+ VP IG + RG GY ++ + FD ++ SGDL R PDG + +
Sbjct: 378 -QYREVPEG--EIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRV 434
Query: 120 KDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN 179
R KD I GGE I++ E+E ++ HP V+ AA+V D+ +GE CAF+ ++ +
Sbjct: 435 VGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKA 494
Query: 180 GEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKA 224
+ + Y P + E LP T+ GK K LR
Sbjct: 495 VVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNT 540
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 233 bits (596), Expect = 4e-74
Identities = 74/227 (32%), Positives = 104/227 (45%), Gaps = 17/227 (7%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
G TL +G+ E G V + D P E I QG P DE + D
Sbjct: 319 KAVFGCTLQQVFGMAE----GLVNYTRLDD---PEE---IIVNTQGKPMSPYDESRVWDD 368
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIEL 119
+ V G ++ RG + GY K + +F G++R+GD+ DGYI +
Sbjct: 369 -HDRDVKPG--ETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425
Query: 120 KDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN 179
+ R+KD I GGE ++ EVE+ L +HP+V +AA+V PD GE C F+ +D
Sbjct: 426 EGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-APK 484
Query: 180 GEEIINYCRDR-LPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKA 224
E+ + R+R L Y P V F E P+T GK K LRE
Sbjct: 485 AAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 226 bits (578), Expect = 9e-72
Identities = 69/223 (30%), Positives = 103/223 (46%), Gaps = 16/223 (7%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPV 61
G + YG+TET T S+ + + + GVP G+ E+ + +
Sbjct: 294 AATGRRVIERYGMTET-LMNT---------SVRADGEPRAGT-VGVPLPGV-ELRLVEED 341
Query: 62 TMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELK 120
D +++GE+ RG + YL AT AF G+FR+GD+ VR PDGY+ +
Sbjct: 342 GTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIV 401
Query: 121 DR-SKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKD-GCVA 178
R + D+I SGG I E+E+ L HP V EAAV G PD GE A++ D
Sbjct: 402 GRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPP 461
Query: 179 NGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLRE 220
+ ++ RL + PR V + + +P+ GK K L
Sbjct: 462 ALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 211 bits (539), Expect = 1e-65
Identities = 68/222 (30%), Positives = 110/222 (49%), Gaps = 21/222 (9%)
Query: 11 AYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDA 70
+G+TE P P K QGVP + E+ + + +
Sbjct: 334 IWGMTEA-CPMVTTN--------PPLRLDKSTT-QGVPMSDI-ELKVISLEDGRELGVG- 381
Query: 71 KTIGEVMFRGNTVMNGYLKNLKATQDAFD-----GGWFRSGDLGVRHPDGYIELKDRSKD 125
GE++ RG + GY K K Q+ + +FR+GD+G +G++ +DR K+
Sbjct: 382 -ESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKE 440
Query: 126 IIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN--GEEI 183
+I G I+ E+E++L H +V++ AV+G+PD+ GE P AF+ LK E+I
Sbjct: 441 VIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDI 500
Query: 184 INYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKA 224
I + R+R+ Y R V F E+LP+T++GK + +LREK
Sbjct: 501 IEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAE 542
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 6e-65
Identities = 73/236 (30%), Positives = 104/236 (44%), Gaps = 42/236 (17%)
Query: 1 MEELGFTLTHAYGLTETYG-----------PGTVCVWKPDWNSLPREEQAKIKARQGVPH 49
G + G TE GT G P
Sbjct: 321 TAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTT----------------------GRPV 358
Query: 50 LGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLG 109
G EI+++D +VP +G++ +G + Y N + ++ F G W RSGD
Sbjct: 359 PGY-EIELRDE-AGHAVPDG--EVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKY 414
Query: 110 VRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAF 169
R P+G RS D++ G+ +S +EVE VL H +VLEAAVVG AF
Sbjct: 415 CRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGG-LVKTRAF 473
Query: 170 VKLKDGCVAN---GEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREK 221
V LK + EE+ + +DRL + PR +VF +DLPKT+TGK Q++ LRE+
Sbjct: 474 VVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 203 bits (518), Expect = 1e-62
Identities = 69/222 (31%), Positives = 104/222 (46%), Gaps = 21/222 (9%)
Query: 11 AYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQG-----VPHLGLDEIDIKDPVTMKS 65
YG+TE GP + G V + E+ I DP T S
Sbjct: 329 GYGMTEA-GPVLAMCLAFAKEPFDI--------KPGACGTVVRNA---EMKIVDPETGAS 376
Query: 66 VPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSK 124
+P GE+ RG+ +M GYL + +AT D GW +GD+G D + + DR K
Sbjct: 377 LP--RNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLK 434
Query: 125 DIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEII 184
++I G ++ E+E++L +HP + +AAVVG D+ GE P AFV + A +EI
Sbjct: 435 ELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIK 494
Query: 185 NYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKAM 225
Y ++ Y + V F E +PK +GK + L+EK +
Sbjct: 495 QYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAGI 536
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 198 bits (507), Expect = 6e-61
Identities = 73/229 (31%), Positives = 107/229 (46%), Gaps = 20/229 (8%)
Query: 11 AYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDA 70
YGLTET + + P+ + P G E + D T K++ +
Sbjct: 339 GYGLTET---TSAILITPEGDDKP--------GAVGKVVPFF-EAKVVDLDTGKTLGVN- 385
Query: 71 KTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIELKDRSKDIIIS 129
GE+ RG +M+GY+ N +AT D GW SGD+ D + + DR K +I
Sbjct: 386 -QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY 444
Query: 130 GGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRD 189
G ++ E+ES+L HP++ +A V G PDD GE P A V L+ G +EI++Y
Sbjct: 445 KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVAS 504
Query: 190 RLPHYMAPRT-VVF-EDLPKTSTGKTQKYVLREKAKAMGSISKKGTSKL 236
++ R VVF +++PK TGK +RE K G SKL
Sbjct: 505 QVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKA---KKGGKSKL 550
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 2e-59
Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 24/229 (10%)
Query: 11 AYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDA 70
YGLTET + + P+ + P G + + D T KS+ +
Sbjct: 341 GYGLTET---TSAIIITPEGDDKP--------GASGKVVPLF-KAKVIDLDTKKSLGPN- 387
Query: 71 KTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSKDIIIS 129
GEV +G +M GY+ N +AT++ D GW +GD+G + + + DR K +I
Sbjct: 388 -RRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKY 446
Query: 130 GGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRD 189
G + E+ESVL HPS+ +A V G PD GE P A V L+ G +E+++Y
Sbjct: 447 KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVAS 506
Query: 190 RLPHYMAPRT-VVF-EDLPKTSTGKTQKYVLREKAKAMGSISKKGTSKL 236
++ + R V F +++PK TGK +RE KK +K+
Sbjct: 507 QVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREIL-------KKPVAKM 548
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 3e-52
Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 25/216 (11%)
Query: 11 AYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQG-----VPHLGLDEIDIKDPVTMKS 65
YG+TE GP P + G V + E+ I DP T S
Sbjct: 376 GYGMTEA-GPVLAMSLGFAKEPFPV--------KSGACGTVVRNA---EMKIVDPDTGDS 423
Query: 66 VPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSK 124
+ GE+ RG+ +M GYL N AT + D GW +GD+G+ D + + DR K
Sbjct: 424 LS--RNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLK 481
Query: 125 DIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEII 184
++I G ++ E+E++L HP + + AVV ++ GE P AFV + +++
Sbjct: 482 ELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVK 541
Query: 185 NYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLR 219
+ ++ Y V F E +PK +GK +LR
Sbjct: 542 QFVSKQVVFYKRINKVFFTESIPKAPSGK----ILR 573
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 1e-47
Identities = 72/237 (30%), Positives = 104/237 (43%), Gaps = 28/237 (11%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKA-RQGVPHLGLDEIDIKD 59
+ G + +YG TET G C+ KIK G D + I D
Sbjct: 343 RAQTGLDIRESYGQTET---GLTCMVSKTM---------KIKPGYMGTAASCYD-VQIID 389
Query: 60 PVTMKSVPSDAKTIGEVMFRGNTV-----MNGYLKNLKATQDAFDGGWFRSGDLGVRHPD 114
+P T G++ R + +GY+ N T G ++ GD G++ D
Sbjct: 390 D-KGNVLPPG--TEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDED 446
Query: 115 GYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKD 174
GY + R+ DII S G I EVE+ L HP+V+E AV+ PD GE AFV L
Sbjct: 447 GYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLAS 506
Query: 175 GCVANG-----EEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKAM 225
+++ +E+ + + Y PR + F +LPKT TGK Q+ LR+K M
Sbjct: 507 QFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKM 563
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 1e-43
Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 4/145 (2%)
Query: 84 MNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVL 143
Y K+ + T++ + G++ +GD+ DGY+ R+ DII + G + EVES L
Sbjct: 435 FVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESAL 494
Query: 144 FSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGE---EIINYCRDRLPHYMAPRTV 200
HP+VLE A+ G PD G+ A + L + E+ ++ ++ Y PR +
Sbjct: 495 IQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRII 554
Query: 201 VF-EDLPKTSTGKTQKYVLREKAKA 224
F +LPKT +GK ++ +R+K ++
Sbjct: 555 EFVPELPKTISGKIRRVEIRDKDQS 579
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 8e-26
Identities = 50/245 (20%), Positives = 95/245 (38%), Gaps = 42/245 (17%)
Query: 11 AYGLTET----------YGPGTVCVWKPDWNSLP--REEQAKIKARQGVPHLG----LDE 54
YGL E T+ + R A + + + E
Sbjct: 326 CYGLAEATLLVTGGTPGSSYKTLTL---AKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE 382
Query: 55 IDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF---------DGGWFRS 105
+ I DP T+ D +GE+ + N+V GY + T+ AF + R+
Sbjct: 383 VKIIDPDTLIPCDFD--QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRT 440
Query: 106 GDLGVRHPDGYIELKDRSKDIIISGGENISTIEVE-SVLFSHPSVL--EAAVVGRPDDHW 162
GDLG H + + + R KD+II G+N ++E S++ S + + A ++H
Sbjct: 441 GDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH- 498
Query: 163 GETPCAFVKLKDGCV--ANGEEIINYCRDRLP--HYMAPRTVVF---EDLPKTSTGKTQK 215
++K+ + + + N + + H + T+V + +P T++GK ++
Sbjct: 499 EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRR 558
Query: 216 YVLRE 220
R+
Sbjct: 559 NFCRK 563
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 6e-23
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 4/127 (3%)
Query: 101 GWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160
+ SGD R DGY + R D++ G + T E+ES L +HP + EAAVVG P
Sbjct: 494 NMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHA 553
Query: 161 HWGETPCAFVKLKDGCVANGE---EIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKY 216
G+ A+V L G + E E+ N+ R + P + + + LPKT +GK +
Sbjct: 554 IKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRR 613
Query: 217 VLREKAK 223
+LR+ A
Sbjct: 614 ILRKIAA 620
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 2e-22
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 12/138 (8%)
Query: 97 AFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVG 156
+ G +F +GD + DGYI + R D++ G +ST E+E+ + P V E AVVG
Sbjct: 500 PYPGYYF-TGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVG 558
Query: 157 RPDDHWGETPCAFVKLKDGCVANG----------EEIINYCRDRLPHYMAPRTVVF-EDL 205
DD G+ AFV LK+ + + ++ R + + AP+ ++ +DL
Sbjct: 559 FNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDL 618
Query: 206 PKTSTGKTQKYVLREKAK 223
PKT +GK + +LR+
Sbjct: 619 PKTRSGKIMRRILRKILA 636
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 3e-13
Identities = 36/150 (24%), Positives = 55/150 (36%), Gaps = 33/150 (22%)
Query: 86 GYLKNLKATQDAF--DGG--WFRSGDLGVRHPDGYIELKDRS----KDIIISG-----GE 132
GYL N + T +AF G + +GD+G D + R K +G +
Sbjct: 361 GYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIK---YAGYRIELED 417
Query: 133 NISTIEVESVLFSHPSVLEAAVVGRPDDHWGETP--CAFVKLKDGCVANG-------EEI 183
V L P V A V R + + A++ +KDG + I
Sbjct: 418 ------VSQQLNQSPMVASAVAVPRYNKE-HKVQNLLAYIVVKDGVKERFDRELELTKAI 470
Query: 184 INYCRDRLPHYMAPRTVVF-EDLPKTSTGK 212
+D + YM P ++ + LP T GK
Sbjct: 471 KASVKDHMMSYMMPSKFLYRDSLPLTPNGK 500
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 2e-12
Identities = 30/134 (22%), Positives = 42/134 (31%), Gaps = 33/134 (24%)
Query: 11 AYGLTET----------YGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGL-----DEI 55
+Y L E P TV D SL + +
Sbjct: 348 SYWLAEATVYVATSKPGQPPETVDF---DTESLSAGHAKPCAGGGATSLISYMLPRSPIV 404
Query: 56 DIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF------------DGGWF 103
I D T P T+GE+ G+ V NGY + ++ F +G W
Sbjct: 405 RIVDSDTCIECPDG--TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWL 462
Query: 104 RSGDLGVRHPDGYI 117
R+GD G DG +
Sbjct: 463 RTGDSGFVT-DGKM 475
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 5e-12
Identities = 33/119 (27%), Positives = 46/119 (38%), Gaps = 21/119 (17%)
Query: 104 RSGDLGVRHPDGYIELKDRS----KDIIISG-----GENISTIEVESVLFSHPSVLEAAV 154
++GD DG IE R K I G E VES+L H + E AV
Sbjct: 410 KTGDQARWLSDGNIEYLGRIDNQVK---IRGHRVELEE------VESILLKHMYISETAV 460
Query: 155 VGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGK 212
D CA+ + E++ + + LP YM P + + +P TS GK
Sbjct: 461 SVHKDHQEQPYLCAYFVSEKH--IPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGK 517
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 5e-12
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 29/123 (23%)
Query: 104 RSGDLGVRHPDGYIELKDRS----KDIIISG-----GENISTIEVESVLFSHPSVLEAAV 154
R+GDL PDG IE R K I G E +E L +P V +A V
Sbjct: 841 RTGDLARWLPDGTIEYAGRIDDQVK---IRGHRIELEE------IEKQLQEYPGVKDAVV 891
Query: 155 VGRPDDHWGETPCAFVKLKDGCVANGE----EIINYCRDRLPHYMAPRTVVF-EDLPKTS 209
V + + A++ V + ++ + + +LP YM P+T F ++LP T+
Sbjct: 892 VADRHESGDASINAYL------VNRTQLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTT 945
Query: 210 TGK 212
GK
Sbjct: 946 NGK 948
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 1e-11
Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 24/123 (19%)
Query: 104 RSGDLGVRHPDGYIELKDRS----KDIIISG-----GENISTIEVESVLFSHPSVLEAAV 154
R+GD G DG I + R K + G E +E + V A V
Sbjct: 379 RTGDAGFI-QDGQIFCQGRLDFQIK---LHGYRMELEE------IEFHVRQSQYVRSAVV 428
Query: 155 VGRPDDHWGETPCAFVKLKDGCVANG----EEIINYCRDRLPHYMAPRTVVF-EDLPKTS 209
+ + E A + ++ I LP YM PR ++ + + T+
Sbjct: 429 IPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTA 488
Query: 210 TGK 212
GK
Sbjct: 489 NGK 491
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 1e-11
Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 30/146 (20%)
Query: 86 GYLKNLKATQDAF---DGG-WFRSGDLGVRH-PDGYIELKDRS----KDIIISG-----G 131
GYL + + T+ AF DG +++GD + +G + R K + G
Sbjct: 358 GYLGSPELTEKAFTMIDGERAYKTGD--AGYVENGLLFYNGRLDFQIK---LHGYRMELE 412
Query: 132 ENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG----EEIINYC 187
E +E L + V A +V + A V + I
Sbjct: 413 E------IEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKEL 466
Query: 188 RDRLPHYMAPRTVVF-EDLPKTSTGK 212
+RLP+YM PR ++ +P T GK
Sbjct: 467 NERLPNYMIPRKFMYQSSIPMTPNGK 492
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 3e-11
Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 26/119 (21%)
Query: 104 RSGDLGVRHPDGYIELKDRS----KDIIISG-----GENISTIEVESVLFSHPSVLEAAV 154
R+GD G + R K ++G +E P +L+ A+
Sbjct: 399 RTGDRARYDEQGRLRFIGRGDGQVK---LNGYRLDLPA------LEQRFRRQPGILDCAL 449
Query: 155 VGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGK 212
+ R + + + +LP + P V E LP T+ GK
Sbjct: 450 LVRERNG-VKQLLCAW------TGKADASPQALLRQLPTWQRPHACVRVEALPLTAHGK 501
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 2e-10
Identities = 43/244 (17%), Positives = 69/244 (28%), Gaps = 67/244 (27%)
Query: 5 GFTLTHAYGLTETYGPGTVCV--WKPDWNSLPREEQAKIKARQGVPHLGLDEID-----I 57
L + YG TE T+ + P + I G P + +
Sbjct: 319 RVALVNVYGPTEV----TIGCSAGRIL----PDSDTRCI----GHP------LGDSVAHV 360
Query: 58 KDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWF----RSGDLGVRHP 113
P + + V GE++ G+ V NGYL + F R+GD+
Sbjct: 361 LAPGSNEHVK--KGMAGELVIEGSLVANGYLN--RPDAKGFCDINGRKMYRTGDIVRMDA 416
Query: 114 DGYIELKDRS----KDIIISG-----GENISTIEVESVLFSHPSVLEAAVVGRPDD---- 160
D I R K + G GE V V+ S V +
Sbjct: 417 DSSILFLGRKDEQVK---VRGQRLELGE------VSEVIRSLSPTDIDVVTLLLNHPGTS 467
Query: 161 ----------HWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVF-EDLP-KT 208
+ + + C LP YM P ++ +P +
Sbjct: 468 KQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRD 527
Query: 209 STGK 212
++ K
Sbjct: 528 TSAK 531
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 236 | |||
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 99.97 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.97 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.96 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 99.81 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.59 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.59 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.17 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 98.28 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 98.2 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 98.19 |
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-44 Score=312.40 Aligned_cols=209 Identities=32% Similarity=0.562 Sum_probs=188.8
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|.++++.||+||++...+... .. .....++|+|++++ +++|+|++++++++.| +.|||+|+|++
T Consensus 291 ~~~~~~~~~YG~TE~~~~~~~~~-~~----------~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~ 356 (503)
T 4fuq_A 291 KTGHAVLERYGMTETNMNTSNPY-DG----------DRVPGAVGPALPGV-SARVTDPETGKELPRG--DIGMIEVKGPN 356 (503)
T ss_dssp HHSCCEEECCEETTTEECBCCCS-SS----------CCCTTEEEEBCTTC-EEEEECTTTCCBCCTT--CCEEEEEESTT
T ss_pred HhCCCccceEcccccCcccccCC-CC----------CCcCCccccCCCCe-EEEEEECCCCCCCcCC--CceEEEEECCc
Confidence 46889999999999976543221 10 12235799999999 9999997699999988 89999999999
Q ss_pred cchhhcCCchhhhcccC-CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCC
Q 046870 83 VMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 161 (236)
++.|||++|+.|.+.|. +|||+|||+++++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++.
T Consensus 357 v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~ 436 (503)
T 4fuq_A 357 VFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHAD 436 (503)
T ss_dssp SCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETT
T ss_pred hhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchh
Confidence 99999999999999986 89999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 162 WGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
.++.++++|+..++...+..++.++++++|+.|++|..+++++ ||+|++||++|++|+++++++
T Consensus 437 ~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 437 FGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp TEEEEEEEEEECTTCCCCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred cCceeEEEEEeCCCCCCCHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 8889999999988877889999999999999999999998777 999999999999999998764
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=313.41 Aligned_cols=211 Identities=31% Similarity=0.498 Sum_probs=186.8
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
++++++.||+||++++++.+....... ......++|.|++++ +++|+|++++++++.| +.|||+|+|+.++
T Consensus 323 ~~~l~~~YG~TE~~~~~~~~~~~~~~~------~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~ 393 (536)
T 3ni2_A 323 QARLGQGYGMTEAGPVLAMCLAFAKEP------FDIKPGACGTVVRNA-EMKIVDPETGASLPRN--QPGEICIRGDQIM 393 (536)
T ss_dssp TSEEEEEEECGGGSSEEEECGGGSSSC------CCCCTTCCCEECSSC-EEEEECTTTCCBCCTT--CCEEEEEESTTSC
T ss_pred CCCccccccccccchhhhcccccCCcc------ccCCCCCeeEeCCCc-EEEEEeCCCCcCCCCC--CccEEEEeCcccc
Confidence 789999999999987655442211100 012345899999999 9999997789999988 8899999999999
Q ss_pred hhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCC
Q 046870 85 NGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWG 163 (236)
Q Consensus 85 ~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 163 (236)
.|||++|+.|.+.| .+|||+|||+++++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++..+
T Consensus 394 ~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g 473 (536)
T 3ni2_A 394 KGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAG 473 (536)
T ss_dssp SEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTE
T ss_pred hhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCC
Confidence 99999999999988 58999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHh
Q 046870 164 ETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKA 224 (236)
Q Consensus 164 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~ 224 (236)
+.++++|+..+....+.+++.++++++|+.|++|..+++++ ||+|++||++|++|++++.+
T Consensus 474 ~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 474 EVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp EEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred ceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 99999999988777888999999999999999999998877 99999999999999998764
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-43 Score=310.84 Aligned_cols=211 Identities=31% Similarity=0.562 Sum_probs=147.4
Q ss_pred CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcch
Q 046870 6 FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMN 85 (236)
Q Consensus 6 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~ 85 (236)
+++++.||+||++.+++..... ......++|.|++++ +++|+|++++++++.| +.|||+|+|++++.
T Consensus 329 ~~~~~~YG~TE~~~~~~~~~~~----------~~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~ 395 (549)
T 3g7s_A 329 LRHNQIWGMTEACPMVTTNPPL----------RLDKSTTQGVPMSDI-ELKVISLEDGRELGVG--ESGEIVIRGPNIFK 395 (549)
T ss_dssp CEEEEEEECGGGSSEEEECCGG----------GGGGTTSCCEECTTC-EEEEECSSSCCEECTT--CCEEEEEESTTSCS
T ss_pred ccccceEeccccchhhhcCCcc----------ccCcCCCccccCCCC-EEEEEeCCCCcCCCCC--CceEEEEECcchhh
Confidence 8999999999998765543321 113456899999999 9999996699999988 88999999999999
Q ss_pred hhcCCchhhhccc---CCC--eEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 86 GYLKNLKATQDAF---DGG--WFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 86 ~y~~~~~~~~~~~---~~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
|||++|+.+.+.| .+| ||+|||+++++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++
T Consensus 396 GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~ 475 (549)
T 3g7s_A 396 GYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDE 475 (549)
T ss_dssp EETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC-
T ss_pred hhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEcc
Confidence 9999999999988 677 99999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceeEEEEEeCCC--CCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCCcc
Q 046870 161 HWGETPCAFVKLKDG--CVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSIS 229 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~--~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~~~ 229 (236)
..++.++++|++.++ ...+.+++.++++++|+.|++|..+.+++ ||+|++||++|++|+++..+..+.+
T Consensus 476 ~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~~~ 547 (549)
T 3g7s_A 476 EAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGHHHH 547 (549)
T ss_dssp -----CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC-----------------------
T ss_pred ccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhcccccc
Confidence 888899999998876 45788999999999999999999887776 9999999999999999998776544
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=310.31 Aligned_cols=207 Identities=28% Similarity=0.470 Sum_probs=166.9
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEec--
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRG-- 80 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~-- 80 (236)
.+|+++++.||+||++..++...... ....++|+|++++ +++|+|+ +|++++.| +.|||+|++
T Consensus 364 ~~g~~i~~~YG~TE~~~~~~~~~~~~-----------~~~~~~G~p~~~~-~v~ivd~-~g~~~~~g--~~GEl~v~~~~ 428 (580)
T 3etc_A 364 FTGIKLMEGFGQTETVVTIATFPWME-----------PKPGSIGKPTPGY-KIELMDR-DGRLCEVG--EEGEIVINTME 428 (580)
T ss_dssp HHSCCCEEEECCTTSSCCEECCTTSC-----------CCTTCCBEECTTC-EEEEECT-TSCBCCTT--CCEEEEEECTT
T ss_pred HhCCeEecccccccccceeecCCCCC-----------CCCCccccCCCCC-EEEEECC-CCCCCCCC--CceEEEEecCC
Confidence 46899999999999976554432211 2345899999999 9999998 89999988 889999997
Q ss_pred ---CCcchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEec
Q 046870 81 ---NTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGR 157 (236)
Q Consensus 81 ---~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 157 (236)
+.++.||+++|+.|.+.|.+|||+|||+++++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.
T Consensus 429 g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~ 508 (580)
T 3etc_A 429 GKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGV 508 (580)
T ss_dssp CCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEE
T ss_pred CCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEeCCCCCCC---HHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHh
Q 046870 158 PDDHWGETPCAFVKLKDGCVAN---GEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKA 224 (236)
Q Consensus 158 ~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~ 224 (236)
+++..++.+.++|++.++...+ .++|.+++++.+++|++|+.+.+++ ||+|++|||+|++|++++++
T Consensus 509 ~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 509 PDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp EETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC--------------------
T ss_pred eccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhc
Confidence 9888889999999998765444 3689999999999999999998776 99999999999999998865
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=311.63 Aligned_cols=220 Identities=38% Similarity=0.618 Sum_probs=153.2
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++++++.+.........+.........++|+|++++ +++|+|+ ++++++.+.++.|||+|+|+.
T Consensus 315 ~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~-~g~~~~~~~~~~GEl~v~g~~ 392 (541)
T 1v25_A 315 RMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADE-EGRPVPKDGKALGEVQLKGPW 392 (541)
T ss_dssp HTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC-EEEEECT-TSCBCCSSSCCCEEEEEESTT
T ss_pred HhCCceeecccccccccceecccccccccccCccccccccCCCCCcCCCc-EEEEECC-CCCCCCCCCCcceEEEEeCcc
Confidence 46899999999999987655443221111222222234567899999999 9999997 889998644468999999999
Q ss_pred cchhhcCCchhhhcccC-CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCC
Q 046870 83 VMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 161 (236)
++.|||++|+.|.+.|. +|||+|||+++++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++.
T Consensus 393 v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~ 472 (541)
T 1v25_A 393 ITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPK 472 (541)
T ss_dssp SBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSS
T ss_pred hhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCC
Confidence 99999999999999986 99999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCceeEEEEEeCCCCCCCHHHHHHHHHh-cCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 162 WGETPCAFVKLKDGCVANGEEIINYCRD-RLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
.++.++++|++. +...+..++.+++.+ .|+.|++|+.+++++ ||+|++||++|++|++++.+.
T Consensus 473 ~~~~~~a~vv~~-~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 473 WQERPLAVVVPR-GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp SSEEEEECC--------------------CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred cCceEEEEEEEC-CCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHh
Confidence 888899988876 334566789999998 899999999998776 999999999999999987654
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=298.85 Aligned_cols=216 Identities=23% Similarity=0.265 Sum_probs=186.5
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
++++++.||+||++..++.+.... .........++|+|++++ +++|+|+ +|++++.| +.|||+|+|++++
T Consensus 286 ~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v~ 355 (511)
T 3e7w_A 286 KAKIFNTYGPTEATVAVTSVEITN------DVISRSESLPVGFAKPDM-NIFIMDE-EGQPLPEG--EKGEIVIAGPSVS 355 (511)
T ss_dssp TCEEEECCCCGGGSSCSEEEEECH------HHHTTCSSCCCBEECTTC-EEEEECT-TSCBCCTT--CCEEEEEESTTSC
T ss_pred CcEEEeCcccchheeeeeEEeccc------cccccCCcCCCcceeCCC-EEEEECC-CCCCCCCC--CceEEEEecCccC
Confidence 789999999999987766543211 011112345799999999 9999998 89999988 8899999999999
Q ss_pred hhhcCCchhhhccc--CCC--eEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 85 NGYLKNLKATQDAF--DGG--WFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 85 ~~y~~~~~~~~~~~--~~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
.|||++|+.|.+.| .+| ||+|||+++++ +|+|+++||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++
T Consensus 356 ~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~-dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 434 (511)
T 3e7w_A 356 RGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPN 434 (511)
T ss_dssp CCBTTCHHHHHHHEEESSSSEEEEEEEEEEEE-TTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSS
T ss_pred hhhCCCcccchhhhcCCCCCEEEeCCCeEEcc-CCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCC
Confidence 99999999999887 344 79999999995 99999999999999999999999999999999999999999999888
Q ss_pred CCCceeEEEEEeCCCCCCCH----HHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCCcccc
Q 046870 161 HWGETPCAFVKLKDGCVANG----EEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSISKK 231 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~----~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~~~~~ 231 (236)
..++.+++++++.+...... +++.++++++|+.|++|..+++++ ||+|++|||+|++|++++++.....++
T Consensus 435 ~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~~~~~ 510 (511)
T 3e7w_A 435 GTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSHHHHH 510 (511)
T ss_dssp SSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHTCC--
T ss_pred CCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhcccccC
Confidence 78889999999887644443 678899999999999999998877 999999999999999999998877664
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-42 Score=302.87 Aligned_cols=210 Identities=31% Similarity=0.441 Sum_probs=187.3
Q ss_pred cc-cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecC
Q 046870 3 EL-GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 3 ~~-g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
.| ++++++.||+||++.+++..... .....++|+|++++ +++|+|++++++++.| +.|||+++|+
T Consensus 332 ~~~~~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~ 397 (548)
T 2d1s_A 332 RFNLPGVRQGYGLTETTSAIIITPEG-----------DDKPGASGKVVPLF-KAKVIDLDTKKSLGPN--RRGEVCVKGP 397 (548)
T ss_dssp HTTCSCCEEEEECGGGSSEEEECCTT-----------CCCTTCCBEECTTC-EEEEECTTTCCBCCTT--CCEEEEEEST
T ss_pred HcCCCceeeccccccccceeeecCcc-----------cCCCCCCCccCCCc-eEEEEeCCcCccCCCC--CCeEEEECCH
Confidence 35 57899999999998655442111 02345899999999 9999996689999887 8899999999
Q ss_pred CcchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 82 TVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
.++.|||++|+.|.+.| .+|||+|||+++++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++
T Consensus 398 ~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~ 477 (548)
T 2d1s_A 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDP 477 (548)
T ss_dssp TSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEET
T ss_pred HHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcC
Confidence 99999999999999988 58999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcc-EEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 161 HWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPR-TVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
..++.++++|++.++...+.+++.++++++|+.|++|. .+.+++ ||+|++||++|++|++++.+..
T Consensus 478 ~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i 545 (548)
T 2d1s_A 478 VAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPV 545 (548)
T ss_dssp TTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC
T ss_pred CCCeeeEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhh
Confidence 88888999999887766788999999999999999999 888777 9999999999999999987643
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=301.52 Aligned_cols=210 Identities=32% Similarity=0.551 Sum_probs=183.1
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++. .+.. .. ........++|+|+++..+++|+|+ ++++++.| +.|||+|+|+.
T Consensus 321 ~~~~~~~~~YG~TE~~~-~~~~-~~--------~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~~~g--~~GEl~v~g~~ 387 (539)
T 1mdb_A 321 VFGCTLQQVFGMAEGLV-NYTR-LD--------DPEEIIVNTQGKPMSPYDESRVWDD-HDRDVKPG--ETGHLLTRGPY 387 (539)
T ss_dssp HTCSEEEEEEECTTSCE-EECC-TT--------SCHHHHHHCCCEESSTTCEEEEECT-TSCBCCTT--CCEEEEEECTT
T ss_pred HhCCcEEEEEcCCCCcc-cccC-CC--------CcHHhcCCCCCcccCCCceEEEECC-CCCCCcCC--CcceEEeeCcc
Confidence 47899999999999642 2211 10 0011234689999987647999997 89999988 89999999999
Q ss_pred cchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCC
Q 046870 83 VMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 161 (236)
++.|||++|+.|.+.| .+|||+|||+|+++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++.
T Consensus 388 v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~ 467 (539)
T 1mdb_A 388 TIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQF 467 (539)
T ss_dssp SCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETT
T ss_pred cchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccc
Confidence 9999999999999988 599999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCceeEEEEEeCCCCCCCHHHHHHHHHhc-CCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 162 WGETPCAFVKLKDGCVANGEEIINYCRDR-LPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
.++.++++|++.. ...+.+++.++++++ |+.|++|..+++++ ||+|++||++|++|++++.+..
T Consensus 468 ~g~~~~a~vv~~~-~~~~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i 533 (539)
T 1mdb_A 468 LGERSCVFIIPRD-EAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533 (539)
T ss_dssp TEEEEEEEEEESS-SCCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHH
T ss_pred cCceEEEEEEECC-CCCCHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHH
Confidence 8888999998873 346789999999997 99999999998877 9999999999999999987643
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=298.56 Aligned_cols=203 Identities=29% Similarity=0.496 Sum_probs=181.8
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCC---cccCCCCCceeEEEEe
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTM---KSVPSDAKTIGEVMFR 79 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~---~~~~~~~~~~Gel~v~ 79 (236)
.++.++++.||+||++. .+. ... ....++|.|.+++ +++|+|. ++ ++++.| +.|||+++
T Consensus 295 ~~~~~~~~~YG~TE~~~-~~~-~~~------------~~~~~~g~p~~~~-~~~i~~~-~~~~~~~~~~g--~~GEl~v~ 356 (504)
T 1t5h_X 295 HLPGEKVNIYGTTEAMN-SLY-MRQ------------PKTGTEMAPGFFS-EVRIVRI-GGGVDEIVANG--EEGELIVA 356 (504)
T ss_dssp HCCSEEEEEEEETTTEE-EEE-EES------------CSSSSEEBCCTTC-CEEEECT-TSCTTCBCCTT--CCEEEEEE
T ss_pred hcCcceeeeeccccccc-ccc-ccC------------CCCCccccCCCCC-ceeEEec-cCCCCCcCCCC--CcceEEEe
Confidence 46889999999999932 222 111 1224789999999 9999997 55 788877 88999999
Q ss_pred -cCCcchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEecc
Q 046870 80 -GNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRP 158 (236)
Q Consensus 80 -~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 158 (236)
++.++.||+++|+.|.+.|.+|||+|||+++++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+
T Consensus 357 gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~ 436 (504)
T 1t5h_X 357 ASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLA 436 (504)
T ss_dssp CCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEE
T ss_pred CCceeeceecCCchhhhhhhcCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEee
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEeCCCCCCCHHHHHHHHHh-cCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHH
Q 046870 159 DDHWGETPCAFVKLKDGCVANGEEIINYCRD-RLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAK 223 (236)
Q Consensus 159 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~ 223 (236)
++..++.++++|++.++...+.+++.+++++ +|+.|++|+.+++++ ||+|++||++|++|++++.
T Consensus 437 ~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 437 DQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp CSSSSEEEEEEEEECTTCCCCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred cCCCCcEEEEEEEecCCcCcCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 8888899999999987766788999999998 899999999998877 9999999999999999874
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=297.98 Aligned_cols=207 Identities=37% Similarity=0.678 Sum_probs=184.4
Q ss_pred ccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCc
Q 046870 4 LGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTV 83 (236)
Q Consensus 4 ~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~ 83 (236)
.|+++++.||+||+++.++...... ......++|+|.+++ ++.|+|+ ++.+++.+ .|||+|+|+.+
T Consensus 307 ~~~~~~~~YG~TE~~~~~~~~~~~~---------~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g---~GEl~v~g~~v 372 (517)
T 3r44_A 307 KNIEVVQGYALTESCGGGTLLLSED---------ALRKAGSAGRATMFT-DVAVRGD-DGVIREHG---EGEVVIKSDIL 372 (517)
T ss_dssp TTCEEEEEEECGGGTTCEEEECGGG---------TTTTTTCCBEECTTE-EEEEECT-TSCEESSE---EEEEEEEETTS
T ss_pred cCCcEEEeecccccccceeecCCcc---------ccccCCCCCcCCCCe-EEEEECC-CCCCCCCC---CeEEEEeCcch
Confidence 3789999999999987665543221 123346899999999 9999997 88888775 59999999999
Q ss_pred chhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCC
Q 046870 84 MNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWG 163 (236)
Q Consensus 84 ~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 163 (236)
+.|||++|+.|.+.|.+|||+|||+++++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++..+
T Consensus 373 ~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g 452 (517)
T 3r44_A 373 LKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWG 452 (517)
T ss_dssp CSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTE
T ss_pred hhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988878
Q ss_pred ceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 164 ETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 164 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
+.+++++ ..+....+.+++.++++++|+.|++|..+++++ ||+|++||++|++|++++.+.
T Consensus 453 ~~~~a~v-~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 514 (517)
T 3r44_A 453 EIAAAIV-VADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSAT 514 (517)
T ss_dssp EEEEEEE-EECTTTCCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGG
T ss_pred ceEEEEE-ECCCCCCCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhh
Confidence 8888887 555556788999999999999999999998877 999999999999999998764
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=297.96 Aligned_cols=205 Identities=34% Similarity=0.557 Sum_probs=164.1
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCC-CCCceeEEEEecC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPS-DAKTIGEVMFRGN 81 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~-~~~~~Gel~v~~~ 81 (236)
.+|+++++.||+||++..++..... .....++|+|++++ +++|+|+ +|++++. +.|++|||+|+|+
T Consensus 295 ~~~~~~~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~~~i~d~-~g~~~~~~~~g~~GEl~v~g~ 361 (505)
T 3nyq_A 295 ATGRRVIERYGMTETLMNTSVRADG-----------EPRAGTVGVPLPGV-ELRLVEE-DGTPIAALDGESVGEIQVRGP 361 (505)
T ss_dssp HHSCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-EEEEC------CCCCCCSCCCEEEEEEST
T ss_pred hcCCeeecccchhhcccccccCCCC-----------CCCCCCcccCCCCC-EEEEECC-CCCCcccCCCCceEEEEEecC
Confidence 4688999999999997544332111 11235799999999 9999998 8888876 3348899999999
Q ss_pred CcchhhcCCchhhhcccC-CCeEeccceEEEecCCeEEEEccC-CCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccC
Q 046870 82 TVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRS-KDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPD 159 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 159 (236)
+++.|||++|+.|.+.|. +|||+|||+++++++|+|+|+||+ ||+||++|++|+|.+||+.|.++|.|.+++|++.++
T Consensus 362 ~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~ 441 (505)
T 3nyq_A 362 NLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPD 441 (505)
T ss_dssp TSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEE
T ss_pred chhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeEC
Confidence 999999999999999984 899999999999999999999997 699999999999999999999999999999999998
Q ss_pred CCCCceeEEEEEeCC-CCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHH
Q 046870 160 DHWGETPCAFVKLKD-GCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLRE 220 (236)
Q Consensus 160 ~~~~~~~~~~v~~~~-~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~ 220 (236)
+..++.++++|++.+ ....+.+++.++++++|+.|++|+.+.+++ ||+|++||++|++|++
T Consensus 442 ~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 442 PDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp TTTEEEEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred CCCCcEEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 888899999999875 345678999999999999999999998877 9999999999999985
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-43 Score=306.05 Aligned_cols=209 Identities=31% Similarity=0.577 Sum_probs=91.9
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
|+++++.||+||++++++.+.... ...++|+|++++ +++|+|+ ++++++.| +.|||+|+|++++
T Consensus 295 ~~~~~~~YG~TE~~~~~~~~~~~~------------~~~~~G~p~~~~-~~~i~d~-~~~~~~~g--~~GEl~v~g~~~~ 358 (509)
T 3ivr_A 295 NATFWATFGQSETSGLSTFAPYRD------------RPKSAGRPLFWR-TVAVVDA-EDRPLPPG--EVGEIVLRGPTVF 358 (509)
T ss_dssp TCEEEEEEEEGGGTEEEEEEEGGG------------STTSCCEECTTC-EEEEECT-TSCBCCTT--CCEEEEEESTTSC
T ss_pred CCeEEcccCccccccccccCcccc------------CCCcccccCCCc-EEEEECC-CCCCCCCC--CceEEEEecCCcc
Confidence 889999999999987655543221 123489999999 9999998 79999988 8999999999999
Q ss_pred hhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccC--CCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 85 NGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRS--KDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 85 ~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~--~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
.|||++|+.+.+.|.+|||+|||+++++++|+++++||. +|+||++|++|+|.+||+.|.++|.|.+++|++.+++..
T Consensus 359 ~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~ 438 (509)
T 3ivr_A 359 KGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQW 438 (509)
T ss_dssp CEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC-----------------------------------------
T ss_pred ccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEecccccc
Confidence 999999999999999999999999999999999999999 999999999999999999999999999999999998888
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCCcc
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSIS 229 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~~~ 229 (236)
++.+++++++.++...+..++.+++++.|+.|++|..+++++ ||+|++||++|++|++++++.....
T Consensus 439 ~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~~~ 506 (509)
T 3ivr_A 439 SEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGHHH 506 (509)
T ss_dssp --------------------------------------------------------------------
T ss_pred CcEEEEEEEeCCCCCCCHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhccccc
Confidence 889999999887766778899999999999999999998777 9999999999999999998776443
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-41 Score=296.35 Aligned_cols=216 Identities=22% Similarity=0.244 Sum_probs=182.8
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
++++++.||+||+++.++..... ..........++|.|.+++ ++.|+|+ +|++++.| +.|||+|+|++++
T Consensus 287 ~~~i~~~YG~TE~~~~~~~~~~~------~~~~~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v~ 356 (512)
T 3fce_A 287 KATIMNTYGPTEATVAVTGIHVT------EEVLDQYKSLPVGYCKSDC-RLLIMKE-DGTIAPDG--EKGEIVIVGPSVS 356 (512)
T ss_dssp TCEEEEEECCGGGSSCSEEEECC------HHHHHHCSSCCCEEECTTC-EEEEECS-SSCBCCTT--SCEEEEEESTTSC
T ss_pred CCEEEeCcccChhhhheeeEEec------cccccccCCCccccccCCc-EEEEECC-CCCCCCCC--CeEEEEEeccccC
Confidence 78999999999998776554321 1111223456799999999 9999997 89999988 8899999999999
Q ss_pred hhhcCCchhhhcccC----CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 85 NGYLKNLKATQDAFD----GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 85 ~~y~~~~~~~~~~~~----~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
.|||++|+.+.+.|. ++||+|||++++ ++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++
T Consensus 357 ~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 435 (512)
T 3fce_A 357 VGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKG 435 (512)
T ss_dssp SCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEET
T ss_pred hhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecC
Confidence 999999999999873 569999999999 699999999999999999999999999999999999999999999887
Q ss_pred CCCceeEEEEEeCCCCCCCH----HHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCCcccc
Q 046870 161 HWGETPCAFVKLKDGCVANG----EEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSISKK 231 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~----~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~~~~~ 231 (236)
..++.+++++++.+....+. +++.++++++|+.|++|..+++++ ||+|++||++|++|++++++.++..++
T Consensus 436 ~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~~~~ 511 (512)
T 3fce_A 436 EKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHHHHH 511 (512)
T ss_dssp TEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC-------
T ss_pred CCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhccccccC
Confidence 77788999998876543332 578899999999999999998877 999999999999999999998876554
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=299.62 Aligned_cols=214 Identities=25% Similarity=0.317 Sum_probs=174.0
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
|+++++.||+||++++++.+.... .........++|+|++++ +++|+|+ +|++++.+ +.|||+|+|++++
T Consensus 290 ~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~vG~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v~ 359 (521)
T 3l8c_A 290 SAKIINAYGPTEATVALSAIEITR------EMVDNYTRLPIGYPKPDS-PTYIIDE-DGKELSSG--EQGEIIVTGPAVS 359 (521)
T ss_dssp TCEEEEEECCGGGSSCSEEEEECH------HHHHHCSSCEEEEECTTS-CEEEECT-TSCBCCTT--CCEEEEEESTTSC
T ss_pred CceEEeCcCccHHhhhhceeeccc------ccccCCCccccccccCCC-EEEEECC-CcCCCCCC--CceEEEecccccC
Confidence 789999999999987766543211 111122345799999999 9999997 89999988 8899999999999
Q ss_pred hhhcCCchhhhccc----CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 85 NGYLKNLKATQDAF----DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 85 ~~y~~~~~~~~~~~----~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
.|||++|+.+.+.| .++||+|||+|+++++|+|+++||.||+||++|++|+|.+||+.|.++|.|.++++++.++.
T Consensus 360 ~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 439 (521)
T 3l8c_A 360 KGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNK 439 (521)
T ss_dssp SCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSS
T ss_pred hhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecC
Confidence 99999999999887 36799999999999999999999999999999999999999999999999999999988754
Q ss_pred -CCCceeEEEEEeCCCCCCC-------HHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCCc
Q 046870 161 -HWGETPCAFVKLKDGCVAN-------GEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSI 228 (236)
Q Consensus 161 -~~~~~~~~~v~~~~~~~~~-------~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~~ 228 (236)
..++.++++|++.++.... .+++.++++++|+.|++|..+.+++ ||+|++||++|++|++++++....
T Consensus 440 ~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~~ 516 (521)
T 3l8c_A 440 EHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREGH 516 (521)
T ss_dssp SCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC-----
T ss_pred CCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCcc
Confidence 3457889999988763321 4678999999999999999998877 999999999999999998776543
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-41 Score=301.24 Aligned_cols=210 Identities=25% Similarity=0.358 Sum_probs=184.7
Q ss_pred ccc---CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEe
Q 046870 3 ELG---FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFR 79 (236)
Q Consensus 3 ~~g---~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~ 79 (236)
.+| +++++.||+||++++++...... ......++|+|++++ +++|+|+ +|++++.+ +.|||+|+
T Consensus 401 ~~g~~~~~i~~~YG~TE~~~~~~~~~~~~---------~~~~~~s~G~p~~g~-~v~i~d~-~g~~v~~g--~~GEl~i~ 467 (652)
T 1pg4_A 401 KIGKEKCPVVDTWWQTETGGFMITPLPGA---------IELKAGSATRPFFGV-QPALVDN-EGHPQEGA--TEGNLVIT 467 (652)
T ss_dssp HTTTTCSCEEEEBCCGGGSSCSBCCCTTT---------CCBCTTCCBSBCTTC-CEEEECT-TCCBCCSS--EEEEEEEC
T ss_pred HhCCCCCcEEccccCcccccceecCCCCC---------cCccCCccccCcCCC-eEEEECC-CCCCcCCC--ceEEEEEc
Confidence 356 89999999999987655432111 012346899999999 9999998 89999887 89999999
Q ss_pred c--CCcchhhcCCchhhhccc---CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEE
Q 046870 80 G--NTVMNGYLKNLKATQDAF---DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAV 154 (236)
Q Consensus 80 ~--~~~~~~y~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 154 (236)
+ |++++|||++|+.+...+ .+|||+|||+++++++|+|+|+||.||+||++|++|++.+||+.|.+||.|.+++|
T Consensus 468 g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~V 547 (652)
T 1pg4_A 468 DSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAV 547 (652)
T ss_dssp SCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEE
T ss_pred cCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence 9 789999999999887764 38899999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCceeEEEEEeCCCCCCC---HHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 155 VGRPDDHWGETPCAFVKLKDGCVAN---GEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
++.+++..++.++++|++.++...+ .++|+++++++|++|++|..+++++ ||+|++|||+|++|++++.+.
T Consensus 548 vg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 548 VGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp EEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred EEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCC
Confidence 9998887888999999998765444 4789999999999999999998877 999999999999999999875
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=300.96 Aligned_cols=208 Identities=32% Similarity=0.466 Sum_probs=181.9
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEe---
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFR--- 79 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~--- 79 (236)
.+|+++++.||+||++..++..... .....++|+|++++ +++|+|+ +|++++.| +.|||+|+
T Consensus 345 ~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~v~i~d~-~g~~~~~G--~~GEl~v~~~~ 409 (570)
T 3c5e_A 345 QTGLDIRESYGQTETGLTCMVSKTM-----------KIKPGYMGTAASCY-DVQIIDD-KGNVLPPG--TEGDIGIRVKP 409 (570)
T ss_dssp HHSCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-CEEEECT-TSCBCCTT--CCEEEEEECSS
T ss_pred HhCCchhhccchhhcccceecCccc-----------ccCCCcccccCCCc-eEEEECC-CCCCCCCC--CCCeeEEeccC
Confidence 4689999999999997543322110 01235799999999 9999997 89999988 88999999
Q ss_pred --cCCcchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEec
Q 046870 80 --GNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGR 157 (236)
Q Consensus 80 --~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 157 (236)
|++++.|||++|+.|.+.|.++||+|||+++++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.
T Consensus 410 ~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~ 489 (570)
T 3c5e_A 410 IRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISS 489 (570)
T ss_dssp BCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEE
T ss_pred CCCchhhccccCChhHhhhhhcCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEee
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEeCCCCC--C---CHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 158 PDDHWGETPCAFVKLKDGCV--A---NGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 158 ~~~~~~~~~~~~v~~~~~~~--~---~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
+++..++.++++|++.++.. . ..++|.+++++.|+.|++|..+.+++ ||+|++||++|++|++++...
T Consensus 490 ~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 563 (570)
T 3c5e_A 490 PDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKM 563 (570)
T ss_dssp EETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC-
T ss_pred eCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHhh
Confidence 88877888999998876431 1 24678899999999999999998777 999999999999999988654
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-42 Score=304.86 Aligned_cols=213 Identities=31% Similarity=0.449 Sum_probs=89.5
Q ss_pred cccCe-eeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecC
Q 046870 3 ELGFT-LTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 3 ~~g~~-i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
.++.. +++.||+||+++.++...... ....++|+|++++ +++|+|++++++++.| +.|||+|+|+
T Consensus 330 ~~~~~~v~~~YG~TE~~~~~~~~~~~~-----------~~~~~vG~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~ 395 (550)
T 3rix_A 330 RFHLPGIRQGYGLTETTSAILITPEGD-----------DKPGAVGKVVPFF-EAKVVDLDTGKTLGVN--QRGELCVRGP 395 (550)
T ss_dssp HTTCSCCEEEEECGGGSSEEEECCTTC-----------CCTTEEEEECTTC-EEEEECTTTCCBCCTT--CCEEEEEEST
T ss_pred HcCCCccccccCcCccccceecCCCCC-----------CCCCCcccccCCc-EEEEEeCCCCcCCCCC--CCeEEEEeCC
Confidence 46654 899999999987655433211 1335799999999 9999997789999888 8899999999
Q ss_pred CcchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 82 TVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
+++.|||++|+.|...| .+|||+|||+++++++|+|+++||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++
T Consensus 396 ~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 475 (550)
T 3rix_A 396 MIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDD 475 (550)
T ss_dssp TSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----------------------------------------
T ss_pred CcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecC
Confidence 99999999999999988 68999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcc-EEEEcc-cCCCCCCcccHHHHHHHHHhcCCcc
Q 046870 161 HWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPR-TVVFED-LPKTSTGKTQKYVLREKAKAMGSIS 229 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~~~ 229 (236)
..++.++++|++.++...+.+++.+++++++++++.|. .+++++ ||+|++||++|++|++++.+.....
T Consensus 476 ~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~ 546 (550)
T 3rix_A 476 DAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKGG 546 (550)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CCCceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhcccc
Confidence 88889999999888766778899999999999886654 576666 9999999999999999998765543
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=294.52 Aligned_cols=203 Identities=28% Similarity=0.356 Sum_probs=179.4
Q ss_pred CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcch
Q 046870 6 FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMN 85 (236)
Q Consensus 6 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~ 85 (236)
+++++.||+||++.+++.+...... .....++|+|++++ +++|+|+ ++++++.| +.|||+|+|++++.
T Consensus 317 ~~~~~~YG~TE~~~~~~~~~~~~~~--------~~~~~~vG~p~~~~-~v~i~d~-~~~~~~~g--~~GEl~v~g~~v~~ 384 (563)
T 1amu_A 317 VTYINAYGPTETTICATTWVATKET--------IGHSVPIGAPIQNT-QIYIVDE-NLQLKSVG--EAGELCIGGEGLAR 384 (563)
T ss_dssp SEEEEEECCGGGSSCSEEEECCSSC--------CCSSCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETTCCC
T ss_pred CeEEEEECcCHHhHhheeeeccccc--------CCCCCcccceeCCC-EEEEECC-CcCCCCCC--CcEEEEEechhhCh
Confidence 6899999999998766554322111 01235799999999 9999997 89999887 89999999999999
Q ss_pred hhcCCchhhhcccC-------CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEecc
Q 046870 86 GYLKNLKATQDAFD-------GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRP 158 (236)
Q Consensus 86 ~y~~~~~~~~~~~~-------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 158 (236)
|||++|+.|.+.|. ++||+|||+|+++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+
T Consensus 385 GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~ 464 (563)
T 1amu_A 385 GYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHK 464 (563)
T ss_dssp EETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEE
T ss_pred hhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEee
Confidence 99999999988873 35999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHH
Q 046870 159 DDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKA 222 (236)
Q Consensus 159 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~ 222 (236)
++..++.++++++.... .+..+|.++++++|+.|++|..+++++ ||+|++||++|++|+++.
T Consensus 465 ~~~~~~~~~a~vv~~~~--~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 465 DHQEQPYLCAYFVSEKH--IPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp CTTSCEEEEEEEEESSC--CCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred cCCCCeEEEEEEEeCCC--CCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 88788889999987643 678899999999999999999998877 999999999999998754
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-40 Score=294.78 Aligned_cols=208 Identities=32% Similarity=0.537 Sum_probs=182.5
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCcc-CCcceEEEeCCCCCcccCCCCCceeEEEEecC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPH-LGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
.+|++++|.||+||++....... ........++|.|+ ++. .++|+|+ +++++|.| ++|||+|+|+
T Consensus 325 ~~~~~~~~~YG~tE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~-~~~i~d~-~~~~~p~G--~~GEl~i~G~ 390 (617)
T 3rg2_A 325 EIGCQLQQVFGMAEGLVNYTRLD----------DSAEKIIHTQGYPMCPDD-EVWVADA-EGNPLPQG--EVGRLMTRGP 390 (617)
T ss_dssp HTCSEEEEEEEETTEEEEECCTT----------SCHHHHHHCCCEESCTTC-EEEEECT-TSCBCCTT--CCEEEEEECS
T ss_pred HhCCcEEEEeccCcceeecccCC----------CcccccccCCCccCCCCc-eEEEECC-CCCCCCCC--CceEEEecCc
Confidence 46899999999999964322211 11122345789998 555 9999997 89999988 8999999999
Q ss_pred CcchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 82 TVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
.+++||+++|+.|.+.| .++||+|||+++++++|.|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++
T Consensus 391 ~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~ 470 (617)
T 3rg2_A 391 YTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDE 470 (617)
T ss_dssp SSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEET
T ss_pred cccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCc
Confidence 99999999999999998 58999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCceeEEEEEeCCCCCCCHHHHHHHHHh-cCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 161 HWGETPCAFVKLKDGCVANGEEIINYCRD-RLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
..++.++++++..+. .+..++.+++++ .++.|++|..+++++ ||+|++||++|++|++++.+..
T Consensus 471 ~~~~~~~a~vv~~~~--~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~ 536 (617)
T 3rg2_A 471 LMGEKSCAYLVVKEP--LRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 536 (617)
T ss_dssp TTEEEEEEEEEESSC--CCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHH
T ss_pred ccCeeEEEEEEeCCC--CCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhccc
Confidence 778889999988763 678899999998 699999999998877 9999999999999999887653
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=301.64 Aligned_cols=209 Identities=30% Similarity=0.479 Sum_probs=91.6
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCcc-CCcceEEEeCCCCCcccCCCCCceeEEEEecC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPH-LGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
.+|+++++.||+||++....... ........++|+|+ +++ +++|+|+ ++++++.| ++|||+|+|+
T Consensus 330 ~~~~~~~~~YG~TE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~-~~~i~d~-~~~~~~~g--~~GEl~v~g~ 395 (544)
T 3o83_A 330 VLNCKLQQVFGMAEGLVNYTRLD----------DSDEQIFTTQGRPISSDD-EIKIVDE-QYREVPEG--EIGMLATRGP 395 (544)
T ss_dssp HHCSEEEEEEECTTSCEEECCTT----------SCHHHHHHCCCEESCTTC-EEEEECT-TSCBCCTT--CCEEEEEECT
T ss_pred HhCCcEEeeeccccccceeecCC----------CchhhccCCCceecCCCc-EEEEECC-CCCCCCCC--CeeEEEEecC
Confidence 46899999999999863322111 11123456899997 677 9999997 99999988 8999999999
Q ss_pred CcchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 82 TVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
+++.|||++|+.|.+.| .+|||+|||+++++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++
T Consensus 396 ~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 475 (544)
T 3o83_A 396 YTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDE 475 (544)
T ss_dssp TSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC------------------------------------
T ss_pred CcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCC
Confidence 99999999999999998 58999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceeEEEEEeCCCCCCCHHHHHHHHHh-cCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 161 HWGETPCAFVKLKDGCVANGEEIINYCRD-RLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
..++.++++++..+ ...+..++.+++.+ .|+.|++|..+.+++ ||+|++||++|++|++++.+..
T Consensus 476 ~~g~~~~a~vv~~~-~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 542 (544)
T 3o83_A 476 QFGEKSCAFIVSRN-PELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTST 542 (544)
T ss_dssp --------------------------------------------------------------------
T ss_pred CCCceEEEEEEeCC-CCCCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhcc
Confidence 88888999988775 34566788888888 799999999998777 9999999999999999987643
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-40 Score=290.07 Aligned_cols=203 Identities=35% Similarity=0.514 Sum_probs=173.5
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++.+.+...... ....++|+|++++ +++|+|+ +|++++.| +.|||+|+|++
T Consensus 323 ~~g~~i~~~YG~TE~~~~~~~~~~~~-----------~~~~~~G~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~ 387 (529)
T 2v7b_A 323 HFGCEILDGIGSTEMLHIFLSNRAGA-----------VEYGTTGRPVPGY-EIELRDE-AGHAVPDG--EVGDLYIKGPS 387 (529)
T ss_dssp HHSCCEEEEEECTTTSSEEEECCTTC-----------CCTTSCCEECTTC-EEEEECT-TSCBCCTT--SCEEEEEECTT
T ss_pred HhCCceeeeEchhhcCceeeccccCC-----------CccCCcccCCCCC-EEEEECC-CCCCCCCC--CccEEEEecCC
Confidence 46899999999999976544332111 1235799999999 9999997 89999987 89999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.|||++|+.+...|.++||+|||+++++++|+|+++||.||+||++|++|+|.+||+.|.++|.|.+++|++. +...
T Consensus 388 ~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~ 466 (529)
T 2v7b_A 388 AAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGG 466 (529)
T ss_dssp CCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETT
T ss_pred cccccCCChHHHHHhhhcCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 5556
Q ss_pred CceeEEEEEeCCCCCC---CHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHH
Q 046870 163 GETPCAFVKLKDGCVA---NGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREK 221 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~---~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~ 221 (236)
++.+++++++.++... ..+++.++++++|+.|++|..+++++ ||+|++||++|++|+++
T Consensus 467 ~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 529 (529)
T 2v7b_A 467 LVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529 (529)
T ss_dssp EEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC-
T ss_pred ceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhhC
Confidence 6788899988765321 23679999999999999999998777 99999999999999863
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-41 Score=299.24 Aligned_cols=207 Identities=27% Similarity=0.411 Sum_probs=90.3
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
++++++.||+||++++++...... ........++|+|++++ +++|+|+ ++++++.| ++|||+|+|++++
T Consensus 352 ~~~l~~~YG~TE~~~~~~~~~~~~-------~~~~~~~~~iG~p~~~~-~v~i~d~-~~~~~~~G--~~GEl~v~g~~v~ 420 (570)
T 4gr5_A 352 ALRLGNGYGPAESMGFTTHHAVVA-------GDLSGTALPIGVPLAGK-RAYVLDD-DLKPAANG--ALGELYVAGAGLA 420 (570)
T ss_dssp TCEEEEEECCGGGCSCSEEEECCG-------GGTTSSSCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETTCC
T ss_pred CcEEEEeechhhheeeeeeeeecc-------cccCCCccccceeeCCC-EEEEECC-CCCCCCCC--CcEEEEEeecccc
Confidence 789999999999987665543211 11112335799999999 9999997 89999988 9999999999999
Q ss_pred hhhcCCchhhhcccC---------CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEE
Q 046870 85 NGYLKNLKATQDAFD---------GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVV 155 (236)
Q Consensus 85 ~~y~~~~~~~~~~~~---------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 155 (236)
.|||++|+.|.+.|. ++||+|||+++++++|+|+|+||+||+||++|++|+|.+||+.|.++|.|.+++|+
T Consensus 421 ~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv 500 (570)
T 4gr5_A 421 HGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVL 500 (570)
T ss_dssp CEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC---------------------------------
T ss_pred hhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEE
Confidence 999999999998873 37999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCceeEEEEEeCCC-CCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHH
Q 046870 156 GRPDDHWGETPCAFVKLKDG-CVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKA 222 (236)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~ 222 (236)
+.+++..++.++++|+.... ...+.++|.++++++|+.|++|..+++++ ||+|++|||+|++|++..
T Consensus 501 ~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~g 569 (570)
T 4gr5_A 501 AQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGSG 569 (570)
T ss_dssp ---------------------------------------------------------------------
T ss_pred EeeCCCCCeEEEEEEEecCCCCCcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhccC
Confidence 99888778888998887643 34567899999999999999999998776 999999999999998753
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=294.39 Aligned_cols=212 Identities=26% Similarity=0.404 Sum_probs=179.5
Q ss_pred ccc---CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCC-CCCceeEEEE
Q 046870 3 ELG---FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPS-DAKTIGEVMF 78 (236)
Q Consensus 3 ~~g---~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~-~~~~~Gel~v 78 (236)
.+| ++|++.||+||++++++........ .....++|.|++++ +++|+|+++|++++. + +.|||++
T Consensus 407 ~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~--------~~~~gs~G~p~~g~-~v~i~d~~~g~~v~~~g--~~Gel~i 475 (663)
T 1ry2_A 407 KIGKNEIPIVDTYWQTESGSHLVTPLAGGVT--------PMKPGSASFPFFGI-DAVVLDPNTGEELNTSH--AEGVLAV 475 (663)
T ss_dssp TTSCSSSCEEECBCCTTTCSCSEECCTTTCC--------CCCTTCCCEECTTC-CEEEECSSSTTCEECSS--CEEEEEE
T ss_pred HhCCCCceEEEeECCccccCeeeccCCCCCc--------ccCCCccccCcCCC-eEEEEcCCCCCcCCCCC--cceEEEE
Confidence 456 8999999999998765543220000 12346899999999 999999768898877 5 7899999
Q ss_pred ec--CCcchhhcCCchhhhccc---CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEE
Q 046870 79 RG--NTVMNGYLKNLKATQDAF---DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAA 153 (236)
Q Consensus 79 ~~--~~~~~~y~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 153 (236)
++ |+++.|||++|+.+.+.+ .+|||+|||+++++++|+|+|+||.||+||++|++|++.+||+.|.++|.|.+++
T Consensus 476 ~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~ 555 (663)
T 1ry2_A 476 KAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECA 555 (663)
T ss_dssp SSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEE
T ss_pred ecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEE
Confidence 99 589999999999887765 3789999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCceeEEEEEeCCCCC---C-C------HHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHH
Q 046870 154 VVGRPDDHWGETPCAFVKLKDGCV---A-N------GEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKA 222 (236)
Q Consensus 154 v~~~~~~~~~~~~~~~v~~~~~~~---~-~------~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~ 222 (236)
|++.+++..++.++++|++.++.. . + .++|.+++++.+++|++|..+++++ ||+|++||++|++|++++
T Consensus 556 Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~ 635 (663)
T 1ry2_A 556 VVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKIL 635 (663)
T ss_dssp EECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSC
T ss_pred EEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHH
Confidence 999998878889999999886543 1 1 4789999999999999999998887 999999999999999987
Q ss_pred Hhc
Q 046870 223 KAM 225 (236)
Q Consensus 223 ~~~ 225 (236)
...
T Consensus 636 ~~~ 638 (663)
T 1ry2_A 636 AGE 638 (663)
T ss_dssp C--
T ss_pred cCC
Confidence 664
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=286.13 Aligned_cols=202 Identities=33% Similarity=0.594 Sum_probs=160.8
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||+++.+.... .........++|.|++++ +++|+|+ + . ++.|||+|+|+.
T Consensus 296 ~~~~~~~~~YG~TE~~~~~~~~~---------~~~~~~~~~~~G~p~~~~-~~~i~d~-~-----~--~~~GEl~v~g~~ 357 (501)
T 3ipl_A 296 QYNLPIYNSFGMTETCSQFLTAT---------PEMLHARPDTVGMPSANV-DVKIKNP-N-----K--EGHGELMIKGAN 357 (501)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEC---------HHHHHHCTTCCBEECTTC-EEEEESC-C-----S--SCCEEEEEESTT
T ss_pred HhCCCEeccccccccccceeecC---------ccccccCCCCCCCCCCCc-EEEEecC-C-----C--CCccEEEEeccc
Confidence 35899999999999976544432 122234556899999999 9999997 3 2 267999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.||+++|+.+.. +.+|||+|||+++++++|+++++||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++..
T Consensus 358 ~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~ 436 (501)
T 3ipl_A 358 VMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTW 436 (501)
T ss_dssp SCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTT
T ss_pred hhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccC
Confidence 99999999999887 78999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
++.++++++... ..+..++.++++++|+.|++|..+.+++ ||+|++||++|++|++.....
T Consensus 437 g~~~~a~v~~~~--~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 437 GQVPKLYFVSES--DISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp EEEEEEEEEESS--CCCHHHHHHHHHHHSCGGGSCSEEEECSSCC-------------------
T ss_pred CceEEEEEEeCC--CCCHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence 888888888654 3688999999999999999999998877 999999999999999877654
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=312.52 Aligned_cols=213 Identities=27% Similarity=0.433 Sum_probs=95.0
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
++++++.||+||++.+++.+...... .......++|+|++++ +++|+|++++++++.+ +.|||+|+|+.++
T Consensus 370 ~~~l~~~YG~TE~~~~~~~~~~~~~~------~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i~g~~v~ 440 (979)
T 3tsy_A 370 NAKLGQGYGMTEAGPVLAMSLGFAKE------PFPVKSGACGTVVRNA-EMKIVDPDTGDSLSRN--QPGEICIRGHQIM 440 (979)
T ss_dssp TCEEEECEECGGGCSEEEECGGGSSS------CCCCCTTCCCEECSSC-EEEEECTTSCCBCCTT--CCEEEEEESTTSC
T ss_pred CCeEEeeechhhhhHHHHhCCCCCCC------ccccCCCCcCcccCCc-EEEEEeCCCCCCCCCC--CccEEEEECCCcc
Confidence 78999999999998765543211110 0112345799999999 9999998789999988 8899999999999
Q ss_pred hhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCC
Q 046870 85 NGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWG 163 (236)
Q Consensus 85 ~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 163 (236)
.|||++|+.|.+.| .+|||+|||+++++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++..+
T Consensus 441 ~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g 520 (979)
T 3tsy_A 441 KGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAG 520 (979)
T ss_dssp SEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC--------------------------------------
T ss_pred ccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCC
Confidence 99999999999988 58999999999999999999999999999999999999999999999999999999999888888
Q ss_pred ceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 164 ETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 164 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
+.++++|+..++...+..++.++++++|+.|++|..+++++ ||+|++||++|++|++++.+..
T Consensus 521 ~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 584 (979)
T 3tsy_A 521 EVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGL 584 (979)
T ss_dssp ----------------------------------------------------------------
T ss_pred cEEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhc
Confidence 89999999887766778899999999999999999988776 9999999999999999987644
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-40 Score=292.04 Aligned_cols=212 Identities=21% Similarity=0.251 Sum_probs=92.8
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++..++....... ....++|+|++++ .++|+|++++.+++.| +.|||+|+|+.
T Consensus 317 ~~~~~~~~~YG~TE~~~~~~~~~~~~~----------~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~ 383 (562)
T 3ite_A 317 SDRVALVNVYGPTEVTIGCSAGRILPD----------SDTRCIGHPLGDS-VAHVLAPGSNEHVKKG--MAGELVIEGSL 383 (562)
T ss_dssp CSSCEEEEEECCGGGCSCSEEEECCTT----------SCTTEEEEECTTC-EEEEECTTSSCBCCTT--SCEEEEEESTT
T ss_pred CCCcEEEEeeccchheeeeeeeeecCC----------CCCccccccCCCC-eEEEEeCCCCCCCCCC--CceEEEEeccc
Confidence 468999999999999876655443221 1234789999999 9999998788889888 88999999999
Q ss_pred cchhhcCCchhhhcccCCC--eEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcC-CCcceEEEEeccC
Q 046870 83 VMNGYLKNLKATQDAFDGG--WFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSH-PSVLEAAVVGRPD 159 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~-~~v~~~~v~~~~~ 159 (236)
++.|||++|+.+...+.+| ||+|||++++|++|+|+|+||.||+||++|++|+|.+||+.|.++ +.+.+++++..++
T Consensus 384 v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~ 463 (562)
T 3ite_A 384 VANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNH 463 (562)
T ss_dssp SCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC-------------------------------------
T ss_pred cchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecC
Confidence 9999999999988777676 999999999999999999999999999999999999999999998 7778888888877
Q ss_pred CCCCceeEEEEEeCCCCCC-------------CHHHHHHHHHhcCCCCCCccEEEEcc-cCCC-CCCcccHHHHHHHHHh
Q 046870 160 DHWGETPCAFVKLKDGCVA-------------NGEEIINYCRDRLPHYMAPRTVVFED-LPKT-STGKTQKYVLREKAKA 224 (236)
Q Consensus 160 ~~~~~~~~~~v~~~~~~~~-------------~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t-~~GKi~R~~l~~~~~~ 224 (236)
+..++..++.++....... ..++|+++++++|+.|++|+.+++++ ||+| ++||++|++|++++++
T Consensus 464 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~ 543 (562)
T 3ite_A 464 PGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHT 543 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhc
Confidence 7666655555544432221 12479999999999999999998777 9998 8999999999999987
Q ss_pred cCC
Q 046870 225 MGS 227 (236)
Q Consensus 225 ~~~ 227 (236)
+..
T Consensus 544 ~~~ 546 (562)
T 3ite_A 544 LSL 546 (562)
T ss_dssp ---
T ss_pred cCH
Confidence 653
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-39 Score=288.29 Aligned_cols=204 Identities=19% Similarity=0.247 Sum_probs=164.4
Q ss_pred ccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcc-cCCCCCceeEEEEecCC
Q 046870 4 LGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKS-VPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 4 ~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~-~~~~~~~~Gel~v~~~~ 82 (236)
.+++++|.||+||++.++....... ........++|+|++++ +++|+|+ ++++ ++.| ++|||+|+|+.
T Consensus 301 ~~~~l~n~YG~TE~~~~~~~~~~~~-------~~~~~~~~~iG~p~~~~-~~~i~d~-~~~~~~~~g--~~GEl~i~G~~ 369 (620)
T 4dg8_A 301 PRLHLVNGYGPTENTTFTCCHVVTD-------DDLEEDDIPIGKAIAGT-AVLLLDE-HGQEIAEPD--RAGEIVAFGAG 369 (620)
T ss_dssp TTCEEEEEECCGGGCSCSEEEECCT-------GGGGSSSCCCBEECTTE-EEEEECT-TSCBCCSSS--CCEEEEEEETT
T ss_pred CCeEEEeeEchhhhhhheEEEeccc-------cccCCCCCCceecccCc-EEEEECc-cCCCCCCCC--CceEEEEeccc
Confidence 3789999999999987655443211 11223446899999999 9999998 6666 6666 88999999999
Q ss_pred cchhhcCCchhhhcccCC--------CeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEE
Q 046870 83 VMNGYLKNLKATQDAFDG--------GWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAV 154 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~--------g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 154 (236)
+++||+++|+.|.+.|.+ +||+|||++++++||+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|
T Consensus 370 v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~V 449 (620)
T 4dg8_A 370 LAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCAL 449 (620)
T ss_dssp CCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEE
T ss_pred cccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEE
Confidence 999999999999998843 799999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 155 VGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
++.++...+. ++++++... ..+.+.+.++|+.|++|..+++++ ||+|++||++|++|++++.+.
T Consensus 450 v~~~~~~~~~-lv~~~~~~~------~~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 514 (620)
T 4dg8_A 450 LVRERNGVKQ-LLCAWTGKA------DASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEP 514 (620)
T ss_dssp EEEEETTEEE-EEEEEEECT------TCCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSC
T ss_pred EEEeCCCceE-EEEEEecCh------HHHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccc
Confidence 9887664333 333333322 123455677899999999998877 999999999999999887544
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=297.36 Aligned_cols=204 Identities=28% Similarity=0.368 Sum_probs=178.9
Q ss_pred CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcch
Q 046870 6 FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMN 85 (236)
Q Consensus 6 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~ 85 (236)
.+++|.||+||++..++........ ......++|+|++++ .++|+|+ +++++|.| ++|||+|+|+.+++
T Consensus 747 ~~l~n~YG~TE~~~~~~~~~~~~~~-------~~~~~~~iG~p~~~~-~~~i~d~-~~~~~p~G--~~GEl~i~G~~v~~ 815 (1304)
T 2vsq_A 747 GKLINCYGPTEGTVFATAHVVHDLP-------DSISSLPIGKPISNA-SVYILNE-QSQLQPFG--AVGELCISGMGVSK 815 (1304)
T ss_dssp TCEEEEECCGGGSSCSEEEECCCCC-------SSCSSCCCBEECTTE-EEEEECT-TSCBCCTT--CCEEEEEEETTCCC
T ss_pred CEEEEeEChhHHhHHheeeeccCcc-------ccCCCCCCceeeCCC-EEEEECC-CcCCCCCC--CceEEEEeccccCc
Confidence 6899999999998766554332110 011235799999999 9999998 89999988 89999999999999
Q ss_pred hhcCCchhhhcccC-------CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEecc
Q 046870 86 GYLKNLKATQDAFD-------GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRP 158 (236)
Q Consensus 86 ~y~~~~~~~~~~~~-------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 158 (236)
||+++|+.|.+.|. ++||+|||+|++++||.|+|+||.||+||++|++|++.+||..|.++|+|.+++|++.+
T Consensus 816 GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~ 895 (1304)
T 2vsq_A 816 GYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADR 895 (1304)
T ss_dssp CBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEEC
T ss_pred cccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEe
Confidence 99999999998872 45999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHH
Q 046870 159 DDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKA 222 (236)
Q Consensus 159 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~ 222 (236)
+...+..++++++... ..+..++++++++.|+.|++|..+++++ ||+|++||++|++|.+..
T Consensus 896 ~~~~~~~l~a~vv~~~--~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~ 958 (1304)
T 2vsq_A 896 HESGDASINAYLVNRT--QLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPD 958 (1304)
T ss_dssp CSSSCCEEEEEEECSS--SSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCC
T ss_pred cCCCCEEEEEEEeCCC--CCCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcc
Confidence 7777788999998765 3678999999999999999999998776 999999999999987644
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-37 Score=272.90 Aligned_cols=214 Identities=23% Similarity=0.302 Sum_probs=170.1
Q ss_pred CeeeecccccccCCCcceeecCCCCCC----------------CChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCC
Q 046870 6 FTLTHAYGLTETYGPGTVCVWKPDWNS----------------LPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSD 69 (236)
Q Consensus 6 ~~i~~~YG~TE~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~ 69 (236)
.++++.||+||++.+++.......+.. .+.........++|.|+++ ++|+|++++.+++.|
T Consensus 321 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~---v~i~d~~~~~~~~~g 397 (590)
T 3kxw_A 321 EAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE---VKIIDPDTLIPCDFD 397 (590)
T ss_dssp GGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE---EEEECTTTCCBCCTT
T ss_pred cccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC---eEEEcCCCCcCCCCC
Confidence 479999999999876554322111000 0001112345688999986 788998668999888
Q ss_pred CCceeEEEEecCCcchhhcCCchhhhcccCC-------C--eEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHH
Q 046870 70 AKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-------G--WFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVE 140 (236)
Q Consensus 70 ~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~-------g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE 140 (236)
++|||+|+|++++.|||++|+.|.+.|.+ | ||+|||+|+++ +|.|+|+||.||+||++|++|+|.+||
T Consensus 398 --~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE 474 (590)
T 3kxw_A 398 --QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIE 474 (590)
T ss_dssp --BCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHH
T ss_pred --CEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHH
Confidence 89999999999999999999999988842 5 99999999999 999999999999999999999999999
Q ss_pred HHH-hcCCCcc--eEEEEeccCCCCCceeEEEEEeCCCC--CCCHHHHHHHHHhcCCC-CCCcc-EEEEc---ccCCCCC
Q 046870 141 SVL-FSHPSVL--EAAVVGRPDDHWGETPCAFVKLKDGC--VANGEEIINYCRDRLPH-YMAPR-TVVFE---DLPKTST 210 (236)
Q Consensus 141 ~~l-~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~l~~~l~~-~~~p~-~i~~~---~lP~t~~ 210 (236)
+.| ..++.|. +++|++++++. ++.+++++++.+.. ..+..++.+++++.+.. +++|. .+.++ .||+|++
T Consensus 475 ~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~s 553 (590)
T 3kxw_A 475 FSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTS 553 (590)
T ss_dssp HHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSC
T ss_pred HHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCC
Confidence 999 7789998 78888887665 67788888887653 33567888888888874 77775 45444 3999999
Q ss_pred CcccHHHHHHHHHhcC
Q 046870 211 GKTQKYVLREKAKAMG 226 (236)
Q Consensus 211 GKi~R~~l~~~~~~~~ 226 (236)
|||+|++|++++.+..
T Consensus 554 GKi~R~~L~~~~~~~~ 569 (590)
T 3kxw_A 554 GKIRRNFCRKHLLDKT 569 (590)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHcCC
Confidence 9999999999998754
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=238.12 Aligned_cols=183 Identities=21% Similarity=0.285 Sum_probs=145.4
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||+++.+....... .....+|.+.|++ .+.+.+. |||+++++.
T Consensus 170 ~~~~~~~~~YG~TEt~~~~~~~~~~~-----------~~~g~~~~~~pgv-~~~~~~~-------------Gel~~~g~~ 224 (358)
T 4gs5_A 170 DLAMPVYQSYGMTETVSHVALKALNG-----------PEASELYVFLPGI-QYGVDER-------------GCLHISGAV 224 (358)
T ss_dssp TCSSCEEEEEECGGGSSEEEEEECSS-----------TTCCSCEEECTTC-EEEECTT-------------SEEEEESGG
T ss_pred ccCceEEeccccccccceeecccccc-----------cccceeeccCCCe-EEEecCc-------------CceEEeccc
Confidence 46899999999999987655443221 1234678888888 7766543 999998853
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHh---cCCCcceEEEE-ecc
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLF---SHPSVLEAAVV-GRP 158 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~---~~~~v~~~~v~-~~~ 158 (236)
. .+|||+|||+++++++| ++++||.||+||++|++|+|.+||+.|. .||.|.+++|+ ..+
T Consensus 225 ~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~ 288 (358)
T 4gs5_A 225 T---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEP 288 (358)
T ss_dssp G---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEE
T ss_pred c---------------cCcceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecC
Confidence 2 37899999999999887 6678999999999999999999998774 57899988776 566
Q ss_pred CCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCC
Q 046870 159 DDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGS 227 (236)
Q Consensus 159 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~ 227 (236)
++..++.++++|+.... ....++|.++++++|+.|++|+.+++++ ||+|++|||+|++|++++.+..+
T Consensus 289 d~~~ge~~~a~v~~~~~-~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~~ 357 (358)
T 4gs5_A 289 DAKLGQKLVLVIENAMP-EALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSSN 357 (358)
T ss_dssp ETTTEEEEEEEEESCCC-HHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC----
T ss_pred CccCCEEEEEEEECCCC-CcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhcC
Confidence 77778888888875543 3445789999999999999999998777 99999999999999998876543
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-31 Score=230.04 Aligned_cols=184 Identities=23% Similarity=0.283 Sum_probs=144.9
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.||+++++.||+||+++.++....... ...+.+.+++ .++|+|++++++++.| +.|||+|++.
T Consensus 229 ~~g~~v~~~YG~TE~~~~~~~~~~~~~-------------~g~~~~~~~~-~v~i~d~~~g~~~~~g--~~Gel~v~~~- 291 (436)
T 3qov_A 229 MLNVKAYNSFGMTEMNGPGVAFECQEQ-------------NGMHFWEDCY-LVEIIDPETGEPVPEG--EIGELVLTTL- 291 (436)
T ss_dssp HHTSEEEEEEEEGGGTEEEEEEECTTC-------------SSEEECTTTE-EEEEECTTTCSBCSTT--CCEEEEEEES-
T ss_pred HhCccEEecCcchhhcCCeeEEecCCC-------------CeeEEccCce-EEEEEECCCCCCCCCC--CceEEEEecc-
Confidence 468999999999999654333322110 1245666788 9999997699999988 8899999983
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCC------e---EEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEE
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDG------Y---IELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAA 153 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g------~---l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 153 (236)
+...+.++||+|||+++++++| + ++++||.||+||++|++|+|.+||+.|.++|.|.+++
T Consensus 292 -----------~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~ 360 (436)
T 3qov_A 292 -----------DREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNY 360 (436)
T ss_dssp -----------SCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEE
T ss_pred -----------CcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcE
Confidence 3345568999999999999998 4 6999999999999999999999999999999999999
Q ss_pred EEeccCCCCCceeEEEEEeCCCCCCC----HHHHHHHHHhcCCCC-CCccEEEEcc---cCCCCCCcccHH
Q 046870 154 VVGRPDDHWGETPCAFVKLKDGCVAN----GEEIINYCRDRLPHY-MAPRTVVFED---LPKTSTGKTQKY 216 (236)
Q Consensus 154 v~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~l~~~l~~~-~~p~~i~~~~---lP~t~~GKi~R~ 216 (236)
+++.+++..++.++++|++. +...+ ..++.+.+++.++.+ ++|..+.+++ ||+|+ ||++|.
T Consensus 361 vv~~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 361 LITLETVNNQDEMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp EEEEEEETTEEEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred EEEEEcCCCCcEEEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 99988777778899999988 54444 578888898888888 8898887654 99999 999885
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-31 Score=228.06 Aligned_cols=188 Identities=23% Similarity=0.344 Sum_probs=148.4
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.||+++++.||+||+++.++....... ....+.+.+++ .++|+|+++|++++.| +.|||+|++.
T Consensus 235 ~~g~~v~~~YG~TE~~g~~~~~~~~~~------------~~g~~~~~~~~-~~~i~d~~~g~~~~~G--~~Gel~v~~~- 298 (443)
T 2y4o_A 235 RVGIDALDIYGLSEVMGPGVACECVET------------KDGPVIWEDHF-YPEIIDPVTGEVLPDG--SQGELVFTSL- 298 (443)
T ss_dssp HHTCEEEEEEEETTTTEEEEEEECTTT------------CCSEEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES-
T ss_pred HhCcCEEeccCchhhcCCeEEeccCCC------------CCceEEccCCe-EEEEEcCCCCCCCCCC--CceEEEEeCC-
Confidence 468999999999998443222221110 00134455677 9999997689999987 8899999972
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecC-CeE-----EEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEe
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPD-GYI-----ELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVG 156 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~-g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 156 (236)
+...+.++||+|||+++++++ |++ +++||.+|+|+++|++|+|.+||+.|.++|.|.+++++.
T Consensus 299 -----------t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~ 367 (443)
T 2y4o_A 299 -----------TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQIT 367 (443)
T ss_dssp -----------SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEE
T ss_pred -----------CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEE
Confidence 334456889999999999999 986 899999999999999999999999999999999999888
Q ss_pred ccCCCCCceeEEEEEeCC--C---CCCCHHHHHHHHHhcCCCC-CCccEEEEc---ccCCCCCCcccHHH
Q 046870 157 RPDDHWGETPCAFVKLKD--G---CVANGEEIINYCRDRLPHY-MAPRTVVFE---DLPKTSTGKTQKYV 217 (236)
Q Consensus 157 ~~~~~~~~~~~~~v~~~~--~---~~~~~~~l~~~l~~~l~~~-~~p~~i~~~---~lP~t~~GKi~R~~ 217 (236)
.+++..++.+.++|++.+ + ...+..++.+++++.|+.+ .+|..+.++ .||+|++||++|+.
T Consensus 368 ~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~ 437 (443)
T 2y4o_A 368 LSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVI 437 (443)
T ss_dssp EEEETTEEEEEEEEEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEE
T ss_pred EecCCCCceEEEEEEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEE
Confidence 776656678888888875 2 1234578889999988876 588877665 49999999999964
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-31 Score=226.68 Aligned_cols=187 Identities=19% Similarity=0.238 Sum_probs=148.5
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.||+++++.||+||+++.++....... ....+.+.+++ .++|+|+++|++++.| +.|||++++.
T Consensus 233 ~~g~~v~~~YG~TE~~g~~~~~~~~~~------------~~g~~~~~~~~-~~~i~d~~~g~~~~~g--~~Gel~v~~~- 296 (437)
T 2y27_A 233 RMGIDAVDIYGLSEVMGPGVASECVET------------KDGPTIWEDHF-YPEIIDPETGEVLPDG--ELGELVFTSL- 296 (437)
T ss_dssp HHTSEEEEEEEETTTTEEEEEECCTTT------------CSSCEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES-
T ss_pred HHCcCEEecCCchhhcCCeeEEecCCC------------CCceeEccCce-EEEEEcCCCCCCCCCC--CccEEEEecC-
Confidence 469999999999998432222211110 01244566777 9999997689999987 8899999982
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEec-CCeE-----EEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEe
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHP-DGYI-----ELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVG 156 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~-~g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 156 (236)
+...+.++||+|||++++++ +|++ ++.||.+|+|+++|++|+|.+||+.|.++|.|.++++++
T Consensus 297 -----------t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~ 365 (437)
T 2y27_A 297 -----------TKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIV 365 (437)
T ss_dssp -----------SCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEE
T ss_pred -----------CcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEE
Confidence 33445689999999999998 6985 899999999999999999999999999999999888888
Q ss_pred ccCCCCCceeEEEEEeCCCCC---CCHHHHHHHHHhcCCCC-CCccEEEEc---ccCCCCCCcccHHH
Q 046870 157 RPDDHWGETPCAFVKLKDGCV---ANGEEIINYCRDRLPHY-MAPRTVVFE---DLPKTSTGKTQKYV 217 (236)
Q Consensus 157 ~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~l~~~l~~~-~~p~~i~~~---~lP~t~~GKi~R~~ 217 (236)
.+++..++.++++|++.++.. .+..++.+++++.++.+ .+|..+.++ .||+|+ ||++|+.
T Consensus 366 ~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 366 LTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EEEETTEEEEEEEECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EeecCCCceEEEEEEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 776666778999998876533 23477889999999887 588888766 399999 9999863
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.5e-21 Score=165.77 Aligned_cols=112 Identities=25% Similarity=0.359 Sum_probs=87.0
Q ss_pred CeeeecccccccCCCcceeecCCCCCC--CChhH------------HhhhhccCCCccCCcceEEEeCCCCCcccCCCCC
Q 046870 6 FTLTHAYGLTETYGPGTVCVWKPDWNS--LPREE------------QAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAK 71 (236)
Q Consensus 6 ~~i~~~YG~TE~~~~~~~~~~~~~~~~--~~~~~------------~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~ 71 (236)
+++++.||+||++.+++.......... ..... ......++|+|++ + +++|+|++++++++.|
T Consensus 343 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~-~~~ivd~~~g~~~~~g-- 418 (480)
T 3t5a_A 343 RVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-P-IVRIVDSDTCIECPDG-- 418 (480)
T ss_dssp GGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-S-EEEEEETTTTEECCTT--
T ss_pred hhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-C-EEEEEcCCCCcCCCCC--
Confidence 479999999999876554432211000 00000 0123458999999 7 9999998678999988
Q ss_pred ceeEEEEecCCcchhhcCCchhhhccc------------CCCeEeccceEEEecCCeEEEEcc
Q 046870 72 TIGEVMFRGNTVMNGYLKNLKATQDAF------------DGGWFRSGDLGVRHPDGYIELKDR 122 (236)
Q Consensus 72 ~~Gel~v~~~~~~~~y~~~~~~~~~~~------------~~g~~~TGD~~~~~~~g~l~~~GR 122 (236)
++|||+|+|++++.|||++|+.|.+.| .+|||+|||+|+++ ||+|+|+||
T Consensus 419 ~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 419 TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp BCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred CEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 899999999999999999999999888 46799999999997 999999998
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-15 Score=104.93 Aligned_cols=94 Identities=19% Similarity=0.263 Sum_probs=70.1
Q ss_pred ccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcCCC-CCC
Q 046870 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG---EEIINYCRDRLPH-YMA 196 (236)
Q Consensus 121 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~-~~~ 196 (236)
.|.||+|+++|.+++|.+||+.|.++|+|.++++++.+++.+++.+.++++..+....+. .++.+.+.+.+.. +.+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 489999999999999999999999999999999999998888889999998887654443 3344444444332 234
Q ss_pred ccEEEEcc---cCCCCCCcccH
Q 046870 197 PRTVVFED---LPKTSTGKTQK 215 (236)
Q Consensus 197 p~~i~~~~---lP~t~~GKi~R 215 (236)
+..+.++. ||+| +||++|
T Consensus 81 ~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 81 TPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp CCEEEEECTTCSCCC----CCC
T ss_pred ccceEEEcCCeecCC-CCCcch
Confidence 44555543 9999 699988
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.3e-11 Score=101.19 Aligned_cols=99 Identities=22% Similarity=0.243 Sum_probs=64.1
Q ss_pred ccc-cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCc------cCCcceEEEeCCCCCcccCCCCCcee
Q 046870 2 EEL-GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVP------HLGLDEIDIKDPVTMKSVPSDAKTIG 74 (236)
Q Consensus 2 ~~~-g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~------~~~~~~v~i~d~~~~~~~~~~~~~~G 74 (236)
+.| |+++++.||+||+++++..+.. .++|.+ ++++ .++|+|++++++++.| +.|
T Consensus 254 ~~~p~~~v~~~YG~TE~~~~~~~~~~----------------~~~G~~~~~~~~~~~~-~v~ivD~~~g~~vp~G--~~G 314 (369)
T 3hgu_A 254 EILPDCEFSASYGSTSALGVSRSLLI----------------TSESQQVIYDSFSPFI-TYDVVDSITAQTVEYG--ERG 314 (369)
T ss_dssp HTCTTSEEEEEEEEGGGTEEEEECCB----------------CTTCSSCEEECCTTTE-EEEEECTTTCSBCCTT--CEE
T ss_pred HhCCCcEEEcccCchhhhcceecccc----------------ccCCCcccccCCCCCe-EEEEECCCCCcCCCCC--Cce
Confidence 356 8999999999999765433221 047889 8998 9999998789999988 899
Q ss_pred EEEEecCCcchhhcCCchhhhcccCCCeEeccceEEEecC--C-------eEEEEccCCCeEEEcce
Q 046870 75 EVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPD--G-------YIELKDRSKDIIISGGE 132 (236)
Q Consensus 75 el~v~~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~--g-------~l~~~GR~~d~i~~~G~ 132 (236)
||+|++.. ...+ --+|+|||++..... | .+..++|.++..++.|.
T Consensus 315 El~vt~l~------------~~~~-l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 315 NVIVTHLS------------PWAF-YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEEEE------------TTEE-EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEEEEcC------------cccc-cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 99998732 1111 224889999888653 2 25567777777777664
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.7e-06 Score=75.21 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=51.1
Q ss_pred CceeEEEEecCCcchhhcCCchhhhcccCCCeEeccceEEEec----CCeEEEEccCCCeEEEcceeeCHHHHHHHHhc
Q 046870 71 KTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHP----DGYIELKDRSKDIIISGGENISTIEVESVLFS 145 (236)
Q Consensus 71 ~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 145 (236)
|+.+||+++.. .|+|+ |++||+++++. ..++.|.||.+++|++.|+++...+||+.+..
T Consensus 396 G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 396 GKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp TCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred CCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence 38899999774 35665 99999999984 45799999999999999999999999998874
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.7e-05 Score=69.85 Aligned_cols=87 Identities=13% Similarity=0.063 Sum_probs=63.5
Q ss_pred CceeEEEEecCCcchhhcCCchhhhcccCCCeEeccceEEEecC----CeEEEEccCCCeEEEcceeeCHHHHHHHHhcC
Q 046870 71 KTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPD----GYIELKDRSKDIIISGGENISTIEVESVLFSH 146 (236)
Q Consensus 71 ~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~----g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 146 (236)
|+.+||++++.+ |.|+ |++||++++..- .++.|.||.++++++.|+++...+||+.+...
T Consensus 391 G~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a 454 (581)
T 4epl_A 391 GEEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESA 454 (581)
T ss_dssp TCEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHH
T ss_pred CCeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHH
Confidence 388999998853 4555 999999999752 47999999999999999999999999988742
Q ss_pred --------CCcceEEEEeccCCCCCceeEEEEEeCC
Q 046870 147 --------PSVLEAAVVGRPDDHWGETPCAFVKLKD 174 (236)
Q Consensus 147 --------~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 174 (236)
-.+.+..++...... ...-+++.++..
T Consensus 455 ~~~l~~~~~~l~eft~~~d~~~~-p~hyv~~wE~~~ 489 (581)
T 4epl_A 455 AKRLSEEKIEVIDFSSYIDVSTD-PGHYAIFWEISG 489 (581)
T ss_dssp HHHHHTTTCCEEEEEEEEECSSS-SCEEEEEEEESS
T ss_pred HHhhcccCCeEEEEEEecCCCCC-CCcEEEEEeecC
Confidence 236677666532221 123444556653
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=2.7e-06 Score=74.96 Aligned_cols=62 Identities=10% Similarity=0.115 Sum_probs=52.4
Q ss_pred CCceeEEEEecCCcchhhcCCchhhhcccCCCeEeccceEEEec----CCeEEEEccCCCeEEEcceeeCHHHHHHHHhc
Q 046870 70 AKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHP----DGYIELKDRSKDIIISGGENISTIEVESVLFS 145 (236)
Q Consensus 70 ~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 145 (236)
.|+.+||++++.+ |.|+ |++||++++.. ..++.|.||.++++++.|+++...+||+.+..
T Consensus 383 ~G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~ 446 (581)
T 4eql_A 383 LGCTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQ 446 (581)
T ss_dssp TTCEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHH
T ss_pred CCceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHH
Confidence 3488999998853 4555 99999999986 35799999999999999999999999999885
Q ss_pred CC
Q 046870 146 HP 147 (236)
Q Consensus 146 ~~ 147 (236)
..
T Consensus 447 a~ 448 (581)
T 4eql_A 447 AK 448 (581)
T ss_dssp C-
T ss_pred HH
Confidence 53
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 236 | ||||
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 5e-71 | |
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 2e-59 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 2e-59 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 6e-54 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 7e-52 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 2e-51 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 6e-49 |
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 223 bits (570), Expect = 5e-71
Identities = 84/225 (37%), Positives = 119/225 (52%), Gaps = 4/225 (1%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
E +G + YGLTET K SL EE+ +KA+ G+P + + + D
Sbjct: 306 FERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADE 364
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIEL 119
+ VP D K +GEV +G + GY N +AT+ A G+FR+GD+ V +GY+E+
Sbjct: 365 -EGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEI 423
Query: 120 KDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN 179
KDR KD+I SGGE IS++++E+ L HP V EAAVV P W E P A V +
Sbjct: 424 KDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTP 483
Query: 180 GEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAK 223
E + + + P VF E++P+TS GK K LRE+ K
Sbjct: 484 EELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYK 528
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 196 bits (498), Expect = 2e-59
Identities = 56/227 (24%), Positives = 92/227 (40%), Gaps = 22/227 (9%)
Query: 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMK 64
+ + TET G LP + K P G+ + + D +
Sbjct: 402 KCPVVDTWWQTETGGFMITP--------LPGAIELKA-GSATRPFFGV-QPALVDN---E 448
Query: 65 SVPSDAKTIGEVMFRGN--TVMNGYLKNLKATQDAF---DGGWFRSGDLGVRHPDGYIEL 119
P + T G ++ + + + + + + SGD R DGY +
Sbjct: 449 GHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWI 508
Query: 120 KDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN 179
R D++ G + T E+ES L +HP + EAAVVG P G+ A+V L G +
Sbjct: 509 TGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPS 568
Query: 180 GE---EIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKA 222
E E+ N+ R + P + + + LPKT +GK + +LR+ A
Sbjct: 569 PELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 615
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 193 bits (492), Expect = 2e-59
Identities = 67/216 (31%), Positives = 102/216 (47%), Gaps = 17/216 (7%)
Query: 8 LTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVP 67
+ YGLTET + + P+ + P G E + D T K++
Sbjct: 333 IRQGYGLTET---TSAILITPEGDDKP--------GAVGKVVPFF-EAKVVDLDTGKTLG 380
Query: 68 SDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIELKDRSKDI 126
+ GE+ RG +M+GY+ N +AT D GW SGD+ D + + DR K +
Sbjct: 381 VN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSL 438
Query: 127 IISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINY 186
I G ++ E+ES+L HP++ +A V G PDD GE P A V L+ G +EI++Y
Sbjct: 439 IKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDY 498
Query: 187 CRDRL-PHYMAPRTVVF-EDLPKTSTGKTQKYVLRE 220
++ VVF +++PK TGK +RE
Sbjct: 499 VASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIRE 534
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 181 bits (459), Expect = 6e-54
Identities = 55/238 (23%), Positives = 94/238 (39%), Gaps = 19/238 (7%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
E++G G+ V P + P G+D + +
Sbjct: 382 SEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMK-----PGSASFPFFGIDAVVLDPN 436
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF---DGGWFRSGDLGVRHPDGYI 117
+ S A+ + V + KN D + G++ +GD + DGYI
Sbjct: 437 TGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYI 496
Query: 118 ELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCV 177
+ R D++ G +ST E+E+ + P V E AVVG DD G+ AFV LK+
Sbjct: 497 WILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSS 556
Query: 178 ANG----------EEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAKA 224
+ + ++ R + + AP+ ++ +DLPKT +GK + +LR+
Sbjct: 557 WSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAG 614
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 173 bits (439), Expect = 7e-52
Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 10/157 (6%)
Query: 72 TIGEVMFRGNTVMNGYLKNLKATQDAF-------DGGWFRSGDLGVRHPDGYIELKDRSK 124
GE+ G + GY K + T F +++GD DG IE R
Sbjct: 355 EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRID 414
Query: 125 DIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEII 184
+ + G + EVES+L H + E AV D CA+ + E++
Sbjct: 415 NQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH--IPLEQLR 472
Query: 185 NYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLRE 220
+ + LP YM P + + +P TS GK + L E
Sbjct: 473 QFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 509
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 172 bits (435), Expect = 2e-51
Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 16/223 (7%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
+ L + YG TE + K + P + ++
Sbjct: 293 HQHLPGEKVNIYGTTEAMNSLYMRQPKTGT--------------EMAPGFFSEVRIVRIG 338
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELK 120
+ + ++ + ++ ++ GYL +AT + GW+R+ D+ V P+G + +
Sbjct: 339 GGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRIL 398
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
R D+IISGGENI E+E VL + P V E V+G D WG++ A V + G +
Sbjct: 399 GRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458
Query: 181 EEIINYCR-DRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREK 221
+ + +CR L + P+ + LPK + K + L ++
Sbjct: 459 DALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQ 501
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 165 bits (419), Expect = 6e-49
Identities = 70/226 (30%), Positives = 99/226 (43%), Gaps = 9/226 (3%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
E + +G T G EE I QG P DE + D
Sbjct: 311 SAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI--IVNTQGKPMSPYDESRVWDD 368
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIEL 119
+ V G ++ RG + GY K + +F G++R+GD+ DGYI +
Sbjct: 369 -HDRDVKPG--ETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425
Query: 120 KDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN 179
+ R+KD I GGE ++ EVE+ L +HP+V +AA+V PD GE C F+ +D
Sbjct: 426 EGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-APK 484
Query: 180 GEEIINYCRDR-LPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAK 223
E+ + R+R L Y P V F E P+T GK K LRE
Sbjct: 485 AAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAIS 530
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 236 | |||
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 |
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.6e-43 Score=306.35 Aligned_cols=223 Identities=37% Similarity=0.590 Sum_probs=160.9
Q ss_pred ccccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecC
Q 046870 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 2 ~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
+.+|.++++.||+||++++++.....................++|.|++++ +++|+|+ ++++++.+.++.|||+|+|+
T Consensus 307 ~~~~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~-~~~i~d~-~~~~~~~~~~~~Gel~v~g~ 384 (534)
T d1v25a_ 307 ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADE-EGRPVPKDGKALGEVQLKGP 384 (534)
T ss_dssp HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC-EEEEECT-TSCBCCSSSCCCEEEEEEST
T ss_pred HHhCCeeeeeccccccccceeecccCccccccCccccccccccceeccCCc-EEEEECC-CCCCCCCCCCeeEEEEEcCC
Confidence 356889999999999998777654444444445555566778999999999 9999998 89999987778999999999
Q ss_pred CcchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 82 TVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
+++.||+++++.+...+ .+|||+|||+++++++|.|+++||.+|+||++|++|+|.+||+.|.++|.|.+++|++.+++
T Consensus 385 ~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~ 464 (534)
T d1v25a_ 385 WITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHP 464 (534)
T ss_dssp TSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECS
T ss_pred cccceecCChhhhhhhcccCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECC
Confidence 99999999999998877 58999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 161 HWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
..++.++++|+++.......+.+...+++.|++|++|..+++++ ||+|++|||+|++|+++++++-
T Consensus 465 ~~~~~l~a~vv~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~~~~lP~t~~GKi~R~~lr~~~~~~~ 531 (534)
T d1v25a_ 465 KWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYY 531 (534)
T ss_dssp SSSEEEEECC-------------------CCCTTTSCSBC--------------CCTTHHHHSTTSS
T ss_pred CCCeEEEEEEEeCCCCCCHHHHHHHHHHhcCCcCCCccEEEEECCCCCCCCccccHHHHHHHHHhhh
Confidence 88889999988876533333333445777899999999998777 9999999999999999997753
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=1.9e-41 Score=296.33 Aligned_cols=210 Identities=31% Similarity=0.443 Sum_probs=175.9
Q ss_pred ccc-CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecC
Q 046870 3 ELG-FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 3 ~~g-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
.++ ..+++.||+||+++.++...... ....++|+|++++ +++|+|++++++++.+ ++|||+|+|+
T Consensus 327 ~~~~~~~~~~YG~TE~~~~~~~~~~~~-----------~~~~svG~p~~~~-~~~i~d~d~~~~~~~g--~~Gel~v~g~ 392 (541)
T d1lcia_ 327 RFHLPGIRQGYGLTETTSAILITPEGD-----------DKPGAVGKVVPFF-EAKVVDLDTGKTLGVN--QRGELCVRGP 392 (541)
T ss_dssp HTTCSCCBCEECCGGGSSCSEECCCC--------------CCCCBEECTTC-EEEEECTTTCCBCCTT--CCEEEEEEST
T ss_pred ccCCceeeecCCccccCceEEecCccc-----------CCCCccccccCCC-EEEEEECCCCcCCCCC--CeEEEEEccC
Confidence 345 46899999999988766543221 2345899999999 9999998899999988 8899999999
Q ss_pred CcchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 82 TVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
+++.||++++..+...+ .++||+|||+++++++|+++++||.+|+|+++|++|+|.+||+.|.++|.|.+++|++.+++
T Consensus 393 ~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~ 472 (541)
T d1lcia_ 393 MIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDD 472 (541)
T ss_dssp TSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEET
T ss_pred ccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECC
Confidence 99999999998887766 48899999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCC-CccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 161 HWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYM-APRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~-~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
..++.++++|+++++...+.+++.+++++++.++. +|..+++++ ||+|++|||+|++|++++.+..
T Consensus 473 ~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l~~~~~~~~ 540 (541)
T d1lcia_ 473 DAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK 540 (541)
T ss_dssp TTEEEEEEEEEECTTCCCCHHHHHHHHHHHSCGGGSCTTEEEEESSCCC-----CCHHHHHHHHHHHT
T ss_pred CCCEEEEEEEEECCCCCCCHHHHHHHHHHhCCccccCCcEEEEeCCCCcCCCcCccHHHHHHHHHHhC
Confidence 88889999999998888889999999999998774 788888777 9999999999999999987643
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=9.5e-41 Score=298.76 Aligned_cols=208 Identities=25% Similarity=0.347 Sum_probs=183.2
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEec--CC
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRG--NT 82 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~--~~ 82 (236)
++++++.||+||+|+.+....... .....+++|+|++++ +++|+|+ +|++++.+ +.|||+|++ ++
T Consensus 402 ~~~i~~~yG~TE~g~~~~~~~~~~---------~~~~~gs~G~p~~g~-~v~ivd~-~g~~~~~g--~~Gel~v~~~~p~ 468 (643)
T d1pg4a_ 402 KCPVVDTWWQTETGGFMITPLPGA---------IELKAGSATRPFFGV-QPALVDN-EGHPQEGA--TEGNLVITDSWPG 468 (643)
T ss_dssp CSCEEEEBCCGGGSSCSBCCCTTT---------CCBCTTCCBSBCTTC-CEEEECT-TCCBCCSS--EEEEEEECSCCTT
T ss_pred CceEEEeechhhccceEEecCCCc---------cCCCCCccccccCCC-EEEEECC-CCCCCCCC--ceEEEEEecCCCc
Confidence 478999999999987655432211 112346899999999 9999998 89999887 899999999 57
Q ss_pred cchhhcCCchhhhccc---CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccC
Q 046870 83 VMNGYLKNLKATQDAF---DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPD 159 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 159 (236)
++.+||++++.+.+.+ .+|||+|||++++|++|+|+|+||.||+||++|++|+|.+||+.|.+||.|.+++|++.++
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d 548 (643)
T d1pg4a_ 469 QARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPH 548 (643)
T ss_dssp CCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEE
T ss_pred ccccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEC
Confidence 8899999998776643 5899999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 160 DHWGETPCAFVKLKDGCVANG---EEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 160 ~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
+..++.++++|+++++...+. ++|+++++++|++|++|..+++++ ||+|++|||+|++|++++...
T Consensus 549 ~~~ge~~~a~Vv~~~~~~~~~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~ 618 (643)
T d1pg4a_ 549 AIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 618 (643)
T ss_dssp TTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred CCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCccHHHHHHHhcCC
Confidence 888899999999998766664 479999999999999999998877 999999999999999999764
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.7e-39 Score=285.80 Aligned_cols=210 Identities=25% Similarity=0.386 Sum_probs=174.6
Q ss_pred CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEec--CCc
Q 046870 6 FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRG--NTV 83 (236)
Q Consensus 6 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~--~~~ 83 (236)
.++++.||+||++........... .....+++|.|++++ ++.|+|++++..++.. +..|||++++ |++
T Consensus 390 ~~i~~~yg~te~~~~~~~~~~~~~--------~~~~~gs~G~p~~g~-~~~i~d~~~~~~~~~~-~~~Gel~i~~~~p~~ 459 (640)
T d1ry2a_ 390 IPIVDTYWQTESGSHLVTPLAGGV--------TPMKPGSASFPFFGI-DAVVLDPNTGEELNTS-HAEGVLAVKAAWPSF 459 (640)
T ss_dssp SCEEECBCCTTTCSCSEECCTTTC--------CCCCTTCCCEECTTC-CEEEECSSSTTCEECS-SCEEEEEESSCCTTS
T ss_pred ceEEeeecccccccccccccCCCc--------CCCCCcccccccCCc-eEEEEeCCCCcccCCC-CceEEEEEEecCCCc
Confidence 579999999999876544332211 112346899999999 9999998555555443 3679999998 589
Q ss_pred chhhcCCchhhhccc---CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 84 MNGYLKNLKATQDAF---DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 84 ~~~y~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
+.+||++++.+.+.+ .+|||+|||+|++|++|+|+|+||.||+||++|++|+|.+||+.|.+||.|.+++|++.+++
T Consensus 460 ~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~ 539 (640)
T d1ry2a_ 460 ARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDD 539 (640)
T ss_dssp CCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCC
T ss_pred ccccccCHHHHHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECC
Confidence 999999999988765 36899999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceeEEEEEeCCCCCCC----------HHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 161 HWGETPCAFVKLKDGCVAN----------GEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~----------~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
..++.++++|+++++...+ .+++.++++++|++|++|+.+++++ ||+|++|||+|++|++++.+.
T Consensus 540 ~~ge~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~ 615 (640)
T d1ry2a_ 540 LTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 615 (640)
T ss_dssp TTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred CCCeEEEEEEEEcCCCCccccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCcCccHHHHHHHHhCC
Confidence 8899999999988764322 2568888999999999999998887 999999999999999998654
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=2.8e-38 Score=274.91 Aligned_cols=202 Identities=28% Similarity=0.359 Sum_probs=179.8
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
++++++.||+||++.+++......... ....+.|.+.+.. .+.+.|+ ++++++.+ +.|||+|++++++
T Consensus 300 ~~~~~~~yG~tE~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~v~~~d~-~~~~~~~g--~~GEl~v~~~~~~ 367 (514)
T d1amua_ 300 KVTYINAYGPTETTICATTWVATKETI--------GHSVPIGAPIQNT-QIYIVDE-NLQLKSVG--EAGELCIGGEGLA 367 (514)
T ss_dssp TSEEEEEECCGGGSSCSEEEECCSSCC--------CSSCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETTCC
T ss_pred ceeEEEeeccccCceeeeecccccccc--------Ccccccccceeee-eEeeecc-cceecCCC--CeeEEEEccCccc
Confidence 578999999999998776655432211 1234678888888 9999997 89999988 8999999999999
Q ss_pred hhhcCCchhhhccc-------CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEec
Q 046870 85 NGYLKNLKATQDAF-------DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGR 157 (236)
Q Consensus 85 ~~y~~~~~~~~~~~-------~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 157 (236)
.||++++..+...| .+|||+|||++++|++|+|+++||.+|+|+.+|++|+|.+||++|.++++|.+++|++.
T Consensus 368 ~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~ 447 (514)
T d1amua_ 368 RGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVH 447 (514)
T ss_dssp CEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEE
T ss_pred ccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEEE
Confidence 99999999887765 37899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHH
Q 046870 158 PDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLRE 220 (236)
Q Consensus 158 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~ 220 (236)
++...++.+++++++.++ .+.++|.++++++|++|++|..+++++ ||+|++|||+|++|++
T Consensus 448 ~~~~~g~~~~a~v~~~~~--~~~~~l~~~~~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~ 509 (514)
T d1amua_ 448 KDHQEQPYLCAYFVSEKH--IPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 509 (514)
T ss_dssp ECTTSCEEEEEEEEESSC--CCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCC
T ss_pred ECCCCCEEEEEEEEcCCC--CCHHHHHHHHHhhCCcccCceEEEEeCCCCCCCCcChhHHhcCC
Confidence 988888899999988776 678999999999999999999998877 9999999999998876
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=3.1e-35 Score=256.26 Aligned_cols=208 Identities=33% Similarity=0.561 Sum_probs=178.8
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|..+...|+.+|.+....... ........++|.|.++...+.|.++ +|++++.+ +.|||+++|+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~g~p~~~~~~~~v~~~-~g~~~~~~--~~Gel~v~g~~ 387 (536)
T d1mdba_ 321 VFGCTLQQVFGMAEGLVNYTRLD----------DPEEIIVNTQGKPMSPYDESRVWDD-HDRDVKPG--ETGHLLTRGPY 387 (536)
T ss_dssp HTCSEEEEEEECTTSCEEECCTT----------SCHHHHHHCCCEESSTTCEEEEECT-TSCBCCTT--CCEEEEEECTT
T ss_pred ccCceeeeccccccccccccccc----------cccccccCCcccCCCCcceEEEEcC-CCCeeccc--ccceeecCCCc
Confidence 46888999999999864433221 1122345689999987746666665 89999887 88999999999
Q ss_pred cchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCC
Q 046870 83 VMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 161 (236)
++.||++++..+...+ .++||+|||++++++||+|+++||.+|+||++|++|+|.+||+.|.++|+|.+++|++.+++.
T Consensus 388 ~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~ 467 (536)
T d1mdba_ 388 TIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQF 467 (536)
T ss_dssp SCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETT
T ss_pred cccccccccccccccccccCccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCC
Confidence 9999999998887766 478999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCceeEEEEEeCCCCCCCHHHHHHHHHhc-CCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHh
Q 046870 162 WGETPCAFVKLKDGCVANGEEIINYCRDR-LPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKA 224 (236)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~ 224 (236)
.++.++++|+++++ ..+..+++++++++ +++|++|..+++++ ||+|++|||+|++|++++.+
T Consensus 468 ~g~~~~a~v~~~~~-~~~~~~l~~~l~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 531 (536)
T d1mdba_ 468 LGERSCVFIIPRDE-APKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531 (536)
T ss_dssp TEEEEEEEEEESSS-CCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHH
T ss_pred CCeEEEEEEEECCC-CCCHHHHHHHHHhcCCCcCcCccEEEEECCCCcCCCcCccHHHHHHHHHH
Confidence 88889999988754 45778999999875 99999999998777 99999999999999999865
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=3e-34 Score=247.24 Aligned_cols=205 Identities=28% Similarity=0.465 Sum_probs=170.1
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecC-
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN- 81 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~- 81 (236)
.++..+.+.||+||++........... ...+.+.+.+.. .+.+.+. .+..++.| +.|++.+.+.
T Consensus 295 ~~~~~~~~~yg~~e~~~~~~~~~~~~~-----------~~~~~~~~~~~~-~~~~~~~-~~~~~~~g--~~g~~~~~~~~ 359 (503)
T d3cw9a1 295 HLPGEKVNIYGTTEAMNSLYMRQPKTG-----------TEMAPGFFSEVR-IVRIGGG-VDEIVANG--EEGELIVAASD 359 (503)
T ss_dssp HCCSEEEEEEEETTTEEEEEEESCSSS-----------SEEBCCTTCCEE-EECTTSC-TTCBCCTT--CCEEEEEECCT
T ss_pred cccccccccccccccceeeeecccccc-----------ccccccccccce-eeeeecc-cCcccCCC--ccccccccccc
Confidence 457789999999999765444332211 112333343333 3344443 77777777 7798877764
Q ss_pred CcchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCC
Q 046870 82 TVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 161 (236)
....+|++++..+.+.+.+|||+|||+|+++++|.|+++||.+|+||++|++|+|.+||+.|.++|.|.+++|++.+++.
T Consensus 360 ~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~ 439 (503)
T d3cw9a1 360 SAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQR 439 (503)
T ss_dssp TSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETT
T ss_pred cccccccCChhhhHHHhcCCceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCC
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCceeEEEEEeCCCCCCCHHHHHHHHH-hcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHH
Q 046870 162 WGETPCAFVKLKDGCVANGEEIINYCR-DRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKA 222 (236)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~~~l~~~l~-~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~ 222 (236)
.++.++++|+++.+...+.+++.++++ ++|++|++|..+++++ ||+|++|||+|++|++++
T Consensus 440 ~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~~P~t~~GKi~R~~L~~~~ 502 (503)
T d3cw9a1 440 WGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502 (503)
T ss_dssp TEEEEEEEEEECTTCCCCHHHHHHHHHHSSSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred CCeEEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCCccEEEEECCCCcCCCcCccHHHHHHhc
Confidence 888999999998887888999999995 6799999999998877 999999999999999875
|